HHsearch alignment for GI: 254780573 and conserved domain: cd02156
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=96.58 E-value=0.0016 Score=45.48 Aligned_cols=146 Identities=19% Similarity=0.163 Sum_probs=79.3
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 61678888444111279999999999999707998457996055233888999987089864488489999999999999
Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 (461)
Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~ 109 (461)
T Consensus 1 ~~~~g~fd~~H~GH~~l~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~r~~~~~~ 62 (147)
T cd02156 1 VLAPGPFDPLHLGHLRLIERADELAR----YG----GDELIVIDDTDPPIKKLKGK----------PLESLEERLEMLRE 62 (147)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHH----HC----CCCEEEEECCCCCHHHCCCC----------CCCCHHHHHHHHHH
T ss_conf 98986048767899999999999999----76----99289997899914533787----------67689999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 87762685410001235677778999998741143201289287522002454322467546666432102222101235
Q gi|254780573|r 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 (461)
Q Consensus 110 d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~ 189 (461)
T Consensus 63 ~~~~~~~~~~~~-------------------------------------------------------------------- 74 (147)
T cd02156 63 ALKDLGVVLDFD-------------------------------------------------------------------- 74 (147)
T ss_pred HCCCEEEEEECC--------------------------------------------------------------------
T ss_conf 288814998577--------------------------------------------------------------------
Q ss_pred CEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH-HHHHHHHCCCCCCHHHEECC
Q ss_conf 12666337766631414677667643320477778752984148741356666875136-68888640875301210034
Q gi|254780573|r 190 DFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE-IAQSCCADRIEKTANIWIHN 268 (461)
Q Consensus 190 DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENE-iAQs~a~~~~~~~a~yWlH~ 268 (461)
T Consensus 75 ----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~G~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 134 (147)
T cd02156 75 ----------------LEREDGVPDYTFDFVKDLLALL-LPVDVVVVGKDQLFGFEREGALLLLELLKG---PEVVVVPR 134 (147)
T ss_pred ----------------HHHHHCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCCCCCCCCHHHHHHHCC---CCEEEECC
T ss_conf ----------------8886337666799999999844-699889988698789999869999997359---98899571
Q ss_pred CEEEEEECCCCCC
Q ss_conf 3257642022332
Q gi|254780573|r 269 GFLNLEGRKMSKS 281 (461)
Q Consensus 269 G~l~i~geKMSKS 281 (461)
T Consensus 135 ~~~~~~~~~sSt~ 147 (147)
T cd02156 135 GLLDEGGGKSSTS 147 (147)
T ss_pred HHCCCCCEECCCC
T ss_conf 1026787761789