HHsearch alignment for GI: 254780573 and conserved domain: cd07955
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.56 E-value=0.00016 Score=52.72 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-C---H-HHHHHHHHHHHHCC
Q ss_conf 0346877764321000013510-----05967763021101279999999999997513-0---6-79999999998717
Q gi|254780573|r 324 VQRLTEAEILLSKWPQTSTSKG-----IIDPAVLSALYNDLNTVSAIQALHKLARESTK-N---H-DLLPIFNASAHILG 393 (461)
Q Consensus 324 ~e~L~~A~~~l~kl~~~~~~~~-----~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~-~---~-~~~~~~~~~~~iLG 393 (461)
T Consensus 1 d~~L~~A~~rL~rwR~A~a~~~~~~a~~~v~~~r~aLadDLdTP~ALaalD~Wa~~~l~~~g~~~~ap~~v~~avDALLG 80 (81)
T cd07955 1 DEVLADAEARLARWRSAVALPDGPDAEALVARLREALADDLDTPKALAALDAWAREALSRGGTDPDAPALVRTAVDALLG 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
T ss_conf 95899999999999998748679987999999999987337968999999999998762479987663899999998818
Q ss_pred C
Q ss_conf 6
Q gi|254780573|r 394 I 394 (461)
Q Consensus 394 l 394 (461)
T Consensus 81 v 81 (81)
T cd07955 81 V 81 (81)
T ss_pred C
T ss_conf 8