HHsearch alignment for GI: 254780573 and conserved domain: cd07963
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.94 E-value=6.7e-26 Score=205.46 Aligned_cols=130 Identities=27% Similarity=0.358 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC----------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHH
Q ss_conf 0346877764321000013510----------0596776302110127999999999999751306--------799999
Q gi|254780573|r 324 VQRLTEAEILLSKWPQTSTSKG----------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIF 385 (461)
Q Consensus 324 ~e~L~~A~~~l~kl~~~~~~~~----------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~ 385 (461)
T Consensus 1 de~L~~Ak~~Ldrly~~l~~~~~~~~~~~~~~~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~~~~~~~~~~~~~~~l 80 (156)
T cd07963 1 DDNLEDARAALERLYTALRGVPPTTVDIDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKEDIEKAAALAALL 80 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 93599999999999999857785545640016899999999876348799999999999999986046767899999999
Q ss_pred HHHHHHCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE
Q ss_conf 9999871767432--------00014678999999999999988179899999999999889799986998877860488
Q gi|254780573|r 386 NASAHILGIEVCK--------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 (461)
Q Consensus 386 ~~~~~iLGl~~~~--------~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~W 457 (461)
T Consensus 81 ~~~~~vLGll~~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~Gi~ieDt~~G------t~W 154 (156)
T cd07963 81 KALGGVLGLLQQDPEAFLQGGTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILEDSPEG------TTW 154 (156)
T ss_pred HHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------CEE
T ss_conf 99998649877898999722555453579999999999999998399789999999999879278877999------701
Q ss_pred EE
Q ss_conf 72
Q gi|254780573|r 458 KQ 459 (461)
Q Consensus 458 k~ 459 (461)
T Consensus 155 rr 156 (156)
T cd07963 155 RR 156 (156)
T ss_pred CC
T ss_conf 39