HHsearch alignment for GI: 254780573 and conserved domain: cd07963

>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.94  E-value=6.7e-26  Score=205.46  Aligned_cols=130  Identities=27%  Similarity=0.358  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC----------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHH
Q ss_conf             0346877764321000013510----------0596776302110127999999999999751306--------799999
Q gi|254780573|r  324 VQRLTEAEILLSKWPQTSTSKG----------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIF  385 (461)
Q Consensus       324 ~e~L~~A~~~l~kl~~~~~~~~----------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~  385 (461)
T Consensus         1 de~L~~Ak~~Ldrly~~l~~~~~~~~~~~~~~~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~~~~~~~~~~~~~~~l   80 (156)
T cd07963           1 DDNLEDARAALERLYTALRGVPPTTVDIDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKEDIEKAAALAALL   80 (156)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             93599999999999999857785545640016899999999876348799999999999999986046767899999999


Q ss_pred             HHHHHHCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE
Q ss_conf             9999871767432--------00014678999999999999988179899999999999889799986998877860488
Q gi|254780573|r  386 NASAHILGIEVCK--------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW  457 (461)
Q Consensus       386 ~~~~~iLGl~~~~--------~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~W  457 (461)
T Consensus        81 ~~~~~vLGll~~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~Gi~ieDt~~G------t~W  154 (156)
T cd07963          81 KALGGVLGLLQQDPEAFLQGGTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILEDSPEG------TTW  154 (156)
T ss_pred             HHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------CEE
T ss_conf             99998649877898999722555453579999999999999998399789999999999879278877999------701


Q ss_pred             EE
Q ss_conf             72
Q gi|254780573|r  458 KQ  459 (461)
Q Consensus       458 k~  459 (461)
T Consensus       155 rr  156 (156)
T cd07963         155 RR  156 (156)
T ss_pred             CC
T ss_conf             39