HHsearch alignment for GI: 254780573 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=0 Score=771.39 Aligned_cols=300 Identities=48% Similarity=0.864 Sum_probs=290.9
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCH
Q ss_conf 23304798479996167888844411127999999999999970799845799605523388899998708986448848
Q gi|254780573|r 17 EFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI 96 (461)
Q Consensus 17 ~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~ 96 (461)
T Consensus 1 ~f~p~~~~~v~~YicgPt~Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~--V~fv~g~ddhgdKI~~~A~~~g~~------p 72 (301)
T pfam01406 1 FFVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYD--VQFVQNFTDIDDKIIKRAQQQGES------F 72 (301)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHCCC------H
T ss_conf 95588799378997899068997522336899999999999974994--699967786317999999980986------5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCCCCCCCCCHHHHHH
Q ss_conf 9999999999999877626854100012356777789999987411432012-892875220024543224675466664
Q gi|254780573|r 97 SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKM 175 (461)
Q Consensus 97 ~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~YG~Ls~~~~~~~~~ 175 (461)
T Consensus 73 ~e~~d~~~~~F~~~~~~L~I~~~d~~~rtTehi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~~~~yg~l~~~~~~~~~~ 152 (301)
T pfam01406 73 RELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPDYGKLSGQNLEQLEA 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHHHC
T ss_conf 37999999999988998498289868775435799999999999779768726998899666746544046435777752
Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 32102222101235126663377666314146776676433204777787529841487413566668751366888864
Q gi|254780573|r 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 (461)
Q Consensus 176 g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~ 255 (461)
T Consensus 153 ~~~~~~~~~k~~~~df~Lwk~~~~~~~~~~~pwg~~~PgWhie~~~~~~~~~g~~~DiH~~G~Di~~pH~~~~~A~~~a~ 232 (301)
T pfam01406 153 GARGEVGEGKRDPLDFALWKASKEGEPSWDSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAA 232 (301)
T ss_pred CCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCEECCCEEECCCCCHHHHHHHHHH
T ss_conf 57766443325803533211456678775577778989754665067787418987330276510135524199999985
Q ss_pred CCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 08753012100343257642022332332140899850253345577799999998425664321145034687776
Q gi|254780573|r 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 (461)
Q Consensus 256 ~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~~A~~ 332 (461)
T Consensus 233 ~~-~~~~~~~~h~G~l~~~G~KMSKSlGNvv~~~dl~~-------~~g~d~~Ryfll~~~y~~~~~fs~~~l~~a~n 301 (301)
T pfam01406 233 FD-QQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLK-------RYDPRILRYFLLSVHYRSPLDFSEELLEQAKN 301 (301)
T ss_pred HC-CCCCEEEEEEEEEEECCEECCCCCCCCCCHHHHHH-------HCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
T ss_conf 19-99514999852798788386664787377999987-------68999999999846589987879999997239