HHsearch alignment for GI: 254780573 and conserved domain: pfam01921
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=99.82 E-value=1.4e-19 Score=160.33 Aligned_cols=276 Identities=18% Similarity=0.177 Sum_probs=180.4
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH--HHHH----H-HHHCCC-------CCCC
Q ss_conf 999616788884441112799999999999997079984579960552338--8899----9-987089-------8644
Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD--KIIE----R-ARQEHP-------SIPI 92 (461)
Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD--kii~----~-a~~~~~-------~~~~ 92 (461)
T Consensus 21 ~v~~tG~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~--~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IPdP~ 98 (355)
T pfam01921 21 ILVETGIGPSGLPHIGNFREVLRTDAVRRALRKRGFE--TRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIPDPF 98 (355)
T ss_pred EEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECCCCC
T ss_conf 8995266899886421560179999999999974987--69999821565101378899998999873697521347988
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH
Q ss_conf 8848999999999999987762685410001--------------23567777899999874114320128928752200
Q gi|254780573|r 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQP--------------RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 (461)
Q Consensus 93 ~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~p--------------r~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~ 158 (461)
T Consensus 99 g~-~~Sya~h~~~~~~~~L~~~gi~~ef~s~te~Y~sG~~~~~i~~~l~~~~~I~~Il~~~~g~e~~----~-~y~Pf~p 172 (355)
T pfam01921 99 GC-HESYAEHFNAPFLEFLDRFGIEYEFISATELYKSGLYDEAILIALENRDEIMEILLPYRGEERQ----E-TYSPFLP 172 (355)
T ss_pred CC-CCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----C-CEEEEEE
T ss_conf 87-4559999999999999983982899867885524655999999998589999999985286668----8-7368988
Q ss_pred C-CCCCCCCCCCHHHHH-HHHHCC--CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 2-454322467546666-432102--222101235126663377666314146776676433204777787529841487
Q gi|254780573|r 159 I-PNYGSFSRRKIDEQK-MGTRVP--EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 (461)
Q Consensus 159 ~-~~YG~Ls~~~~~~~~-~g~r~~--~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH 234 (461)
T Consensus 173 iC~~cGrv~~t~v~~~d~~~~~v~Y~c~cG~~~~~~~------~~g--~~KL~W---kvDW-----~mRW~~lg--VdfE 234 (355)
T pfam01921 173 ICPKCGRVLTTPVVEYDAEGGTITYRCECGHEGEVDI------TGG--NGKLQW---KVDW-----AMRWAALG--VDFE 234 (355)
T ss_pred ECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE------CCC--CCCCCC---CCCC-----HHEEEEEC--CEEE
T ss_conf 8588893725689999678987999869998899841------157--666787---5663-----33057856--3486
Q ss_pred EECCCCCCCCCHHHHHHHHH---HCCCCCC-HHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 41356666875136688886---4087530-121003432576-420223323321408998502533455777999999
Q gi|254780573|r 235 GGGLDLIFPHHENEIAQSCC---ADRIEKT-ANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461)
Q Consensus 235 ~GG~DL~FPHHENEiAQs~a---~~~~~~~-a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461)
T Consensus 235 p~GKDh~~~GGS~~~~~~I~~~i~g~~pP~~~~Y----E~~~~kgg~KmSsSkGn~is~~e~L-------~~~~pE~Lr~ 303 (355)
T pfam01921 235 PFGKDHAAPGGSYDTSSRIAREILGGEPPEPFPY----ELILLKGGGKMSSSKGNGITIEEWL-------EYAPPESLRF 303 (355)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCE----EEEEECCCCCCCCCCCCCCCHHHHH-------HHCCHHHHHH
T ss_conf 2574324678762228999999709999998865----7899669971046889876999999-------8669999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 984256643211450346877764321000
Q gi|254780573|r 310 AMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 (461)
Q Consensus 310 ~lLsshYRspLdfS~e~L~~A~~~l~kl~~ 339 (461)
T Consensus 304 l~~~~~P~~a~~l~fd~ip~~~Deyd~~~~ 333 (355)
T pfam01921 304 LMFRVKPKKAKRLDFDVIPKLVDEYDRLER 333 (355)
T ss_pred HHCCCCCCCCEEECCCHHHHHHHHHHHHHH
T ss_conf 980428884512073044668999999999