HHsearch results for GI: 254780573 and protein with PDBid: 1gax_A
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.94 E-value=1.2e-24 Score=195.04 Aligned_cols=341 Identities=19% Similarity=0.227 Sum_probs=210.5
Q ss_pred CCCEEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHH----CCCCCC-CC
Q ss_conf 79847999616--7888844411127999999999999970799845799605523-3888999987----089864-48
Q gi|254780573|r 22 DPSNIRMYVCG--PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQ----EHPSIP-IN 93 (461)
Q Consensus 22 ~~~~v~~Y~CG--pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~----~~~~~~-~~ 93 (461)
+.++-..|+-- |.+-+.+||||+++++..|++.||.|..|++ |.|.++. |. -=.|...+++ +|.+.. ++
T Consensus 30 ~~~k~~f~i~~ppPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~--vl~~~G~-D~~Glpie~~~ek~~~~~~~~~~~~~ 106 (862)
T 1gax_A 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFE--AVWLPGT-DHAGIATQVVVERLLLKEGKTRHDLG 106 (862)
T ss_dssp TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSE--EEEECEE-BCCTHHHHHHHHTTTTTTTSCCSCCC
T ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCC-CCCCHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 79999589972898988861231788899999999999807998--8999823-67777999999998876399937669
Q ss_pred C-----CHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH-------
Q ss_conf 8-----48999999999999987762685410---00123567777899999874114320128928752200-------
Q gi|254780573|r 94 D-----AISIITSKNTQQFVKDTTRLACLAPT---HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 (461)
Q Consensus 94 ~-----~~~~~a~~~~~~f~~d~~~L~v~~p~---~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~------- 158 (461)
+ ..++.+.++...+.+++.+||+.-.= +..--.+|..-+.....+|.++|+.|....-|+++...
T Consensus 107 ~~~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~Gliy~~~~~v~wcp~~~t~l~~~ 186 (862)
T 1gax_A 107 REKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDL 186 (862)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECEEECCCCCHHHHH
T ss_conf 99999999999999999999999983961516898176898999999999999998799787300040137877577640
Q ss_pred ---------------------------------------------CCCCCCCCCCCHHH----------------HHHHH
Q ss_conf ---------------------------------------------24543224675466----------------66432
Q gi|254780573|r 159 ---------------------------------------------IPNYGSFSRRKIDE----------------QKMGT 177 (461)
Q Consensus 159 ---------------------------------------------~~~YG~Ls~~~~~~----------------~~~g~ 177 (461)
.+.|..|.|....- +..|+
T Consensus 187 ev~~~~~~~~~~~~~~~~~~~~~l~~~TtrPetl~g~~~~~v~p~~~~~~~l~g~~~~~~~~~~~~~~~~~~~v~~~~GT 266 (862)
T 1gax_A 187 EVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGT 266 (862)
T ss_dssp GEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSS
T ss_pred CCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCEEECCCCCCEEEECCCCCCCCCCCC
T ss_conf 34458887548999997459977999955865122043899997502898870587763567731121123244676786
Q ss_pred HCC-CCCCCCCCCCEEEEEC------------------------------------------------------------
Q ss_conf 102-2221012351266633------------------------------------------------------------
Q gi|254780573|r 178 RVP-EKYHKKNPADFILWKR------------------------------------------------------------ 196 (461)
Q Consensus 178 r~~-~~~~K~~p~DFaLWK~------------------------------------------------------------ 196 (461)
.+- ..+ -..|.||.++++
T Consensus 267 G~V~~~P-~h~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 345 (862)
T 1gax_A 267 GALKVTP-AHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCS 345 (862)
T ss_dssp SEEECCG-GGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEET
T ss_pred CEEEECC-CCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 5178527-888779999986045630010233343323453320796087746999999996698645433000245324
Q ss_pred --C--------------------------CCCCC-------------------EE----ECCCCCCCCCCCCHH-HH---
Q ss_conf --7--------------------------76663-------------------14----146776676433204-77---
Q gi|254780573|r 197 --S--------------------------TPMEP-------------------GW----ESPWGRGRPGWHIEC-SA--- 221 (461)
Q Consensus 197 --~--------------------------~~~e~-------------------~w----~spwG~GRPGWHiEC-sa--- 221 (461)
. ..++. -| .-.||---|-||.+. ..
T Consensus 346 r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~wG~piPi~~~~~~~~~~v 425 (862)
T 1gax_A 346 RCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV 425 (862)
T ss_dssp TTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEEC
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 68981255303356765335666433455238637887676224055541576566567656798776698448885457
Q ss_pred ------------------------------------HHHHHCCC-----------CEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf ------------------------------------77875298-----------4148741356666875136688886
Q gi|254780573|r 222 ------------------------------------MSSHYLGK-----------VFDIHGGGLDLIFPHHENEIAQSCC 254 (461)
Q Consensus 222 ------------------------------------m~~~~lg~-----------~~DIH~GG~DL~FPHHENEiAQs~a 254 (461)
+-..++|. +.|+|.+|.|++|-|----++.+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~wfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Dii~~w~~~~~~~~~~ 505 (862)
T 1gax_A 426 PRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYH 505 (862)
T ss_dssp CCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 84787641222124679612116754453212034406454288424498983089718986256777799999997576
Q ss_pred HCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHH
Q ss_conf 40875301210034325764202233233214089985025334557779999999842566-43211450346877764
Q gi|254780573|r 255 ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY-REPIDFTVQRLTEAEIL 333 (461)
Q Consensus 255 ~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshY-RspLdfS~e~L~~A~~~ 333 (461)
..+..||-+..+|+-.+..+|+|||||+||+|.+.|++ +.|+++++||+|+++.. -+.++|+++.++.+.+.
T Consensus 506 ~~~~~p~k~v~~hG~vl~~~G~KMSKS~GNvi~p~~~i-------~kyGaDalR~~l~~~~~~~~D~~~~~~~~~~~~n~ 578 (862)
T 1gax_A 506 FMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMV-------ERYGADALRFALIYLATGGQDIRLDLRWLEMARNF 578 (862)
T ss_dssp HSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHH-------HHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHH
T ss_pred HCCCCCCCEEEEECEEECCCCCCCCCCCCCCCCHHHHH-------HHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 44988866688714199889866778899979989999-------88197198888887506776422556999999999
Q ss_pred HHHCCCCCCC-----------CCC---CCHHH----------HHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 3210000135-----------100---59677----------6302110127999999999999
Q gi|254780573|r 334 LSKWPQTSTS-----------KGI---IDPAV----------LSALYNDLNTVSAIQALHKLAR 373 (461)
Q Consensus 334 l~kl~~~~~~-----------~~~---~~~~f----------~~AL~DDLNTp~ALa~L~~lvk 373 (461)
++++.+.... ... .+..+ .....+.++...|+..+++++-
T Consensus 579 ~~kl~n~~~~~~~~~~~~~~~~~~~~~~d~wils~l~~~~~~v~~~~~~~~~~~a~~~i~~f~~ 642 (862)
T 1gax_A 579 ANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVW 642 (862)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999996213466666775177899998889999999987774689999999999889