HHsearch results for GI: 254780573 and protein with PDBid: 1irx_A
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=4.2e-37 Score=283.97 Aligned_cols=289 Identities=14% Similarity=0.093 Sum_probs=220.3
Q ss_pred CCEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--HHH----HHHHHH-CCCCCC--
Q ss_conf 984799961--678888444111279999999999999707998457996055233--888----999987-089864--
Q gi|254780573|r 23 PSNIRMYVC--GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID--DKI----IERARQ-EHPSIP-- 91 (461)
Q Consensus 23 ~~~v~~Y~C--GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDid--Dki----i~~a~~-~~~~~~-- 91 (461)
.++..+||| ||++.++.||||+|.+|++|.|.|||.+.|++ |+|+.+|+|.| +++ .+...+ -|....
T Consensus 16 ~~~~~~~v~~~g~SPTG~lHIG~~R~av~~daL~n~L~a~g~~--~~filrieDtD~~R~~~~~~~~~~~~~lg~~~~e~ 93 (523)
T 1irx_A 16 RGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE--VRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEV 93 (523)
T ss_dssp SCCCSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCE--EEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGS
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--EEEEEEEECCCCHHCCCHHHHHHHHHHCCCCHHHC
T ss_conf 2898739994378899863024782628999999999976968--69999998985120130009999999769976655
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCC
Q ss_conf --488489999999999999877626854100012356777789999987411432012892875220024543224675
Q gi|254780573|r 92 --INDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 (461)
Q Consensus 92 --~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~ 169 (461)
........++.+...+...+..++++.+...+....+.++.++.++...++...+......++++++...+.......
T Consensus 94 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (523)
T 1irx_A 94 PDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPA 173 (523)
T ss_dssp CCTTSSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCC
T ss_conf 89887754499999988899999838754444627887515899999999997402231144201023123233454455
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
Q ss_conf 46666432102222101235126663377666314146776676433204777787529841487413566668751366
Q gi|254780573|r 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEI 249 (461)
Q Consensus 170 ~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEi 249 (461)
...... ...+......+...+..|.........|..+||.|+|+||++|+++ +++..+|+|.+|+||+++||+++.
T Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~v~~~~~g~dh~~~~~~~~~ 249 (523)
T 1irx_A 174 MVYCPE-HRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYDT 249 (523)
T ss_dssp EEECTT-TCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTSHHHH
T ss_pred CCHHCC-CCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCHH---HCCCCCEEECCCEEECCCCHHHHH
T ss_conf 521114-5755414776278537998668873204640698735553262021---127873687571210378406788
Q ss_pred HHHHH--HCCCCCCHHHEECCCEEEEE--ECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 88886--40875301210034325764--202233233214089985025334557779999999842566432114503
Q gi|254780573|r 250 AQSCC--ADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 (461)
Q Consensus 250 AQs~a--~~~~~~~a~yWlH~G~l~i~--geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e 325 (461)
+|..+ +.+ ....+|+|.++|+++ |+|||||.||++++++++ +.|.|+++||++++..|.++++|...
T Consensus 250 ~~~~~~~~~~--~~~p~~~h~~~l~~~~~~~KmSKr~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
T 1irx_A 250 GKEIIKEVYG--KEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLY-------EVLEPGLVRFIYARHRPNKEIKIDLG 320 (523)
T ss_dssp HHHHHHHHHC--CCCCBCCEECCEEESCC---------CCCCHHHHH-------TTSCHHHHHHHHHSSCTTSCEEECCS
T ss_pred HHHHHHHCCC--CCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHH-------HCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999986068--88865789835761775545666666621499998-------70799998998737887656550210
Q ss_pred H
Q ss_conf 4
Q gi|254780573|r 326 R 326 (461)
Q Consensus 326 ~ 326 (461)
.
T Consensus 321 ~ 321 (523)
T 1irx_A 321 L 321 (523)
T ss_dssp T
T ss_pred H
T ss_conf 1