HHsearch results for GI: 254780573 and protein with PDBid: 1li5_A
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=0 Score=1151.29 Aligned_cols=435 Identities=41% Similarity=0.736 Sum_probs=405.1
Q ss_pred CCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 74189888982622330479847999616788884441112799999999999997079984579960552338889999
Q gi|254780573|r 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 (461)
Q Consensus 4 ~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a 83 (461)
.|+|||||||++|+|+|+++++|+||+|||||||++||||||+||+||+|+|||++.||+ |+||+||||||||||++|
T Consensus 1 ml~lyntlt~~~e~f~p~~~~~v~~Y~CGpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~--V~~v~nitDiddKi~~~A 78 (461)
T 1li5_A 1 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK--LKYVRNITDIDDKIIKRA 78 (461)
T ss_dssp CCEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCE--EEEEECBBCCSHHHHHHH
T ss_pred CCEEEECCCCCCCCEECCCCCEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHHHHH
T ss_conf 964772798873200338999589994688578984410140299999999999975995--189974161238999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCC
Q ss_conf 87089864488489999999999999877626854100012356777789999987411432012-89287522002454
Q gi|254780573|r 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNY 162 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~Y 162 (461)
+++|++ +.++|++|++.|++||++|||.+|+++||||+||++||++|++|+++|+||.. +|+|||||++|++|
T Consensus 79 ~~~g~~------~~e~~~~~~~~f~~~~~~L~i~~~~~~~r~t~~i~~~i~~i~~L~~~g~aY~~~~g~vyf~~~~~~~y 152 (461)
T 1li5_A 79 NENGES------FVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTY 152 (461)
T ss_dssp HHTTCC------HHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTT
T ss_pred HHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCC
T ss_conf 984959------99999999999999999957999987411148999999999999867988972688673356553011
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 32246754666643210222210123512666337766631414677667643320477778752984148741356666
Q gi|254780573|r 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 (461)
Q Consensus 163 G~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F 242 (461)
|+||++++++++.|+|++.+..||||.||||||++++|||.|+||||+||||||||||||+.++||++||||+||+||+|
T Consensus 153 g~l~~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~e~~w~spWG~grPgWhiecs~m~~~~lg~~~Dih~gG~Dl~f 232 (461)
T 1li5_A 153 GVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMF 232 (461)
T ss_dssp TTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCCCHHHCC
T ss_conf 55110020001246765656567883646653878899876678877558972667589999882705322657541068
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 87513668888640875301210034325764202233233214089985025334557779999999842566432114
Q gi|254780573|r 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 (461)
Q Consensus 243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdf 322 (461)
||||||+|||+|+++ .+||+||||+|||+++|+||||||||+++++|++ ++|+|+++|||||++|||+||+|
T Consensus 233 pHhene~aq~~a~~g-~~~~~~w~h~g~~~~~g~KMSKSlgn~~~~~~~~-------~~~~~~~~R~~lLs~hYR~pl~f 304 (461)
T 1li5_A 233 PHHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNY 304 (461)
T ss_dssp THHHHHHHHHHHHSS-SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHH-------TTSCHHHHHHHHHSSCTTSCEEE
T ss_pred CCCCCHHHHHHHHHC-CCCCHHHHHCCCCCCCCCCCCCCCCCEEEHHHHH-------CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 864359999998755-8850077635822258764464468874488864-------12776999999985367886445
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHH
Q ss_conf 50346877764321000013510---------0596776302110127999999999999751306--------799999
Q gi|254780573|r 323 TVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIF 385 (461)
Q Consensus 323 S~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~ 385 (461)
|++.|++|++.++|++.+..... .+.+.|.+||+||||||.|+++|+++++.+|+.. .....+
T Consensus 305 s~e~L~~A~~~l~rl~~~l~~~~~~~~~~~~~~~~~~f~~aL~DDlNTp~Ala~l~~lvk~in~~~~~~~~~~~~~~~~L 384 (461)
T 1li5_A 305 SEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHL 384 (461)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCTTSCCCSCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 70469999999999999998555214752112589999999876226799999999999998752233589999999999
Q ss_pred HHHHHHCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE
Q ss_conf 999987176743200--------014678999999999999988179899999999999889799986998877860488
Q gi|254780573|r 386 NASAHILGIEVCKEH--------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 (461)
Q Consensus 386 ~~~~~iLGl~~~~~~--------~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~W 457 (461)
..++.|||+...... .....+.+|+.||++|++||++|||++||+||++|.++||+|+|+++| |+|
T Consensus 385 ~~~~~vLGll~~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~Kdf~~AD~IRdeL~~~GI~leD~~~G------t~W 458 (461)
T 1li5_A 385 RKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG------TTW 458 (461)
T ss_dssp HHHHTTTTCSCSCHHHHC--------------------------------------------------------------
T ss_pred HHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------EEE
T ss_conf 99999637887587788633666664569999999999999997689889999999999779799974998------289
Q ss_pred EEC
Q ss_conf 724
Q gi|254780573|r 458 KQK 460 (461)
Q Consensus 458 k~k 460 (461)
++|
T Consensus 459 ~~k 461 (461)
T 1li5_A 459 RRK 461 (461)
T ss_dssp ---
T ss_pred EEC
T ss_conf 769