HHsearch results for GI: 254780573 and protein with PDBid: 1li5_A

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00  E-value=0  Score=1151.29  Aligned_cols=435  Identities=41%  Similarity=0.736  Sum_probs=405.1

Q ss_pred             CCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             74189888982622330479847999616788884441112799999999999997079984579960552338889999
Q gi|254780573|r    4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA   83 (461)
Q Consensus         4 ~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a   83 (461)
                      .|+|||||||++|+|+|+++++|+||+|||||||++||||||+||+||+|+|||++.||+  |+||+||||||||||++|
T Consensus         1 ml~lyntlt~~~e~f~p~~~~~v~~Y~CGpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~--V~~v~nitDiddKi~~~A   78 (461)
T 1li5_A            1 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK--LKYVRNITDIDDKIIKRA   78 (461)
T ss_dssp             CCEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCE--EEEEECBBCCSHHHHHHH
T ss_pred             CCEEEECCCCCCCCEECCCCCEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHHHHH
T ss_conf             964772798873200338999589994688578984410140299999999999975995--189974161238999999


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCC
Q ss_conf             87089864488489999999999999877626854100012356777789999987411432012-89287522002454
Q gi|254780573|r   84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNY  162 (461)
Q Consensus        84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~Y  162 (461)
                      +++|++      +.++|++|++.|++||++|||.+|+++||||+||++||++|++|+++|+||.. +|+|||||++|++|
T Consensus        79 ~~~g~~------~~e~~~~~~~~f~~~~~~L~i~~~~~~~r~t~~i~~~i~~i~~L~~~g~aY~~~~g~vyf~~~~~~~y  152 (461)
T 1li5_A           79 NENGES------FVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTY  152 (461)
T ss_dssp             HHTTCC------HHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTT
T ss_pred             HHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCC
T ss_conf             984959------99999999999999999957999987411148999999999999867988972688673356553011


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             32246754666643210222210123512666337766631414677667643320477778752984148741356666
Q gi|254780573|r  163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF  242 (461)
Q Consensus       163 G~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F  242 (461)
                      |+||++++++++.|+|++.+..||||.||||||++++|||.|+||||+||||||||||||+.++||++||||+||+||+|
T Consensus       153 g~l~~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~e~~w~spWG~grPgWhiecs~m~~~~lg~~~Dih~gG~Dl~f  232 (461)
T 1li5_A          153 GVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMF  232 (461)
T ss_dssp             TTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCCCHHHCC
T ss_conf             55110020001246765656567883646653878899876678877558972667589999882705322657541068


Q ss_pred             CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             87513668888640875301210034325764202233233214089985025334557779999999842566432114
Q gi|254780573|r  243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF  322 (461)
Q Consensus       243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdf  322 (461)
                      ||||||+|||+|+++ .+||+||||+|||+++|+||||||||+++++|++       ++|+|+++|||||++|||+||+|
T Consensus       233 pHhene~aq~~a~~g-~~~~~~w~h~g~~~~~g~KMSKSlgn~~~~~~~~-------~~~~~~~~R~~lLs~hYR~pl~f  304 (461)
T 1li5_A          233 PHHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNY  304 (461)
T ss_dssp             THHHHHHHHHHHHSS-SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHH-------TTSCHHHHHHHHHSSCTTSCEEE
T ss_pred             CCCCCHHHHHHHHHC-CCCCHHHHHCCCCCCCCCCCCCCCCCEEEHHHHH-------CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             864359999998755-8850077635822258764464468874488864-------12776999999985367886445


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHH
Q ss_conf             50346877764321000013510---------0596776302110127999999999999751306--------799999
Q gi|254780573|r  323 TVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIF  385 (461)
Q Consensus       323 S~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~  385 (461)
                      |++.|++|++.++|++.+.....         .+.+.|.+||+||||||.|+++|+++++.+|+..        .....+
T Consensus       305 s~e~L~~A~~~l~rl~~~l~~~~~~~~~~~~~~~~~~f~~aL~DDlNTp~Ala~l~~lvk~in~~~~~~~~~~~~~~~~L  384 (461)
T 1li5_A          305 SEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHL  384 (461)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCTTSCCCSCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             70469999999999999998555214752112589999999876226799999999999998752233589999999999


Q ss_pred             HHHHHHCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE
Q ss_conf             999987176743200--------014678999999999999988179899999999999889799986998877860488
Q gi|254780573|r  386 NASAHILGIEVCKEH--------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW  457 (461)
Q Consensus       386 ~~~~~iLGl~~~~~~--------~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~W  457 (461)
                      ..++.|||+......        .....+.+|+.||++|++||++|||++||+||++|.++||+|+|+++|      |+|
T Consensus       385 ~~~~~vLGll~~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~Kdf~~AD~IRdeL~~~GI~leD~~~G------t~W  458 (461)
T 1li5_A          385 RKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG------TTW  458 (461)
T ss_dssp             HHHHTTTTCSCSCHHHHC--------------------------------------------------------------
T ss_pred             HHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------EEE
T ss_conf             99999637887587788633666664569999999999999997689889999999999779799974998------289


Q ss_pred             EEC
Q ss_conf             724
Q gi|254780573|r  458 KQK  460 (461)
Q Consensus       458 k~k  460 (461)
                      ++|
T Consensus       459 ~~k  461 (461)
T 1li5_A          459 RRK  461 (461)
T ss_dssp             ---
T ss_pred             EEC
T ss_conf             769