HHsearch results for GI: 254780573 and protein with PDBid: 1rqg_A
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.95 E-value=2.9e-26 Score=206.48 Aligned_cols=334 Identities=19% Similarity=0.140 Sum_probs=216.9
Q ss_pred EEEEE--CCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99961--67888844411127-99999999999997079984579960552-3388899998708986448848999999
Q gi|254780573|r 27 RMYVC--GPTVYDFAHIGNAR-PMIVFDVLYRLLRYYYGEKCVTYVRNITD-IDDKIIERARQEHPSIPINDAISIITSK 102 (461)
Q Consensus 27 ~~Y~C--GpTvy~~~HiG~~r-~~v~~D~l~R~L~~~~~~~~V~~v~niTD-idDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461)
+.|++ =|+|-+.+||||+. +++.+|++.||+|..|++ |.|+.+ || =--||..+|+++|++ +.+++++
T Consensus 3 k~~Ittp~Py~NG~lHiGH~~~~~l~aDi~~Ry~rm~G~~--v~~~~G-tDeHG~~i~~~a~~~g~~------p~e~~d~ 73 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED--VVFICG-TDEHGTPISFRALKEGRS------PREIVDE 73 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE-EBCCSHHHHHHHHHHTCC------HHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECE-ECCCHHHHHHHHHHCCCC------HHHHHHH
T ss_conf 4999658989898856674333789999999999807995--586386-662079999999982999------9999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC---C---------------C
Q ss_conf 999999987762685410001235--6777789999987411432012892875220024---5---------------4
Q gi|254780573|r 103 NTQQFVKDTTRLACLAPTHQPRAT--NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---N---------------Y 162 (461)
Q Consensus 103 ~~~~f~~d~~~L~v~~p~~~pr~t--~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~---~---------------Y 162 (461)
|.+.|.+.++.|||.. |.+-|.| .|.....++..+|.++|+-|.....+++++..-. + |
T Consensus 74 ~~~~~~~~~~~lgis~-D~f~rT~~~~~~~~v~~~f~~L~~~G~Iy~~~~~~~yc~~~~~~l~d~~v~g~cp~~~~~d~~ 152 (722)
T 1rqg_A 74 FHEQIKITFQRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQK 152 (722)
T ss_dssp HHHHHHHHHHHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCC
T ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHEECCCCCCCCCCCC
T ss_conf 9999999999839805-589757998999999999999997799831463545677635261562034524665654455
Q ss_pred CCC---CCC--CHHHHH------HHHHCCCCCCCC------CCCCE-------EEEECC---------CCCCCEE----E
Q ss_conf 322---467--546666------432102222101------23512-------666337---------7666314----1
Q gi|254780573|r 163 GSF---SRR--KIDEQK------MGTRVPEKYHKK------NPADF-------ILWKRS---------TPMEPGW----E 205 (461)
Q Consensus 163 G~L---s~~--~~~~~~------~g~r~~~~~~K~------~p~DF-------aLWK~~---------~~~e~~w----~ 205 (461)
|.- .+. ..+++. .|..++....+. .-.|. .-|++. ..+-.-| +
T Consensus 153 g~~c~~~~~~~~~~~~~~p~c~r~~~~ve~~~~~qwF~kl~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~l~Dw~ISRq 232 (722)
T 1rqg_A 153 GDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRD 232 (722)
T ss_dssp TTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEEC
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 54202457746720036885577797406985133443068888888652025799812323110443057633222344
Q ss_pred CCCCCCCCCCCCH-HH------------HHH-------------------HHHCCCCEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 4677667643320-47------------777-------------------875298414874135666687513668888
Q gi|254780573|r 206 SPWGRGRPGWHIE-CS------------AMS-------------------SHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 (461)
Q Consensus 206 spwG~GRPGWHiE-Cs------------am~-------------------~~~lg~~~DIH~GG~DL~FPHHENEiAQs~ 253 (461)
-+||---|.|.-+ |. -++ ...-+.+.++|..|-|.+++|.---.|...
T Consensus 233 ~~WGipiP~~~~~~~~~v~yvw~da~~~y~s~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~gkDi~~fh~~~~pa~l~ 312 (722)
T 1rqg_A 233 LNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLM 312 (722)
T ss_dssp CSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHH
T ss_pred CCCCEEECCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCHHHHH
T ss_conf 77753978335789985999843454210000134531149820566764213688423775257635442031369998
Q ss_pred HHCC--------CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCH
Q ss_conf 6408--------7530121003432576420223323321408998502533455777999999984256-643211450
Q gi|254780573|r 254 CADR--------IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH-YREPIDFTV 324 (461)
Q Consensus 254 a~~~--------~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLssh-YRspLdfS~ 324 (461)
+... .-++-+..+++|+|+.+|+|||||+||+|.+.|++ ..|+++++||+|++.. ..+..+|++
T Consensus 313 ~~G~~~~~~~~~~~~~~~~v~~hg~l~~~G~KMSKS~GNvIdp~dli-------~~ygaD~lR~~l~~~~~~~~d~df~~ 385 (722)
T 1rqg_A 313 AYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFL-------DVFPADYLRYYLTTIMPETRDSDFSF 385 (722)
T ss_dssp TTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHT-------TTSCHHHHHHHHHHTCCSSSCEEECH
T ss_pred HCCCCCCCCCCCCCCCCEEEEECCEEEECCCEEECCCCCCCCHHHHH-------HHCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 73743002223456785289864189616854110378737889987-------50582789999997088877753027
Q ss_pred HHHHHHHH--HHHHCCCCCC---------------CCCCC---CHHH----------HHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 34687776--4321000013---------------51005---9677----------63021101279999999999997
Q gi|254780573|r 325 QRLTEAEI--LLSKWPQTST---------------SKGII---DPAV----------LSALYNDLNTVSAIQALHKLARE 374 (461)
Q Consensus 325 e~L~~A~~--~l~kl~~~~~---------------~~~~~---~~~f----------~~AL~DDLNTp~ALa~L~~lvk~ 374 (461)
+.+....+ ..+++.++.. ..... +..+ .....+.++...|+.+++++++.
T Consensus 386 ~~~~~~~n~~l~~~l~N~~~r~~~~~~k~~~~~~p~~~~~~~~d~~il~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~ 465 (722)
T 1rqg_A 386 SDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASF 465 (722)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999988887765547999999745521478778731000246999999999999999998635899999999999999
Q ss_pred HCC
Q ss_conf 513
Q gi|254780573|r 375 STK 377 (461)
Q Consensus 375 ~n~ 377 (461)
.|.
T Consensus 466 ~n~ 468 (722)
T 1rqg_A 466 GNR 468 (722)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999