HHsearch results for GI: 254780573 and protein with PDBid: 1rqg_A

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.95  E-value=2.9e-26  Score=206.48  Aligned_cols=334  Identities=19%  Similarity=0.140  Sum_probs=216.9

Q ss_pred             EEEEE--CCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             99961--67888844411127-99999999999997079984579960552-3388899998708986448848999999
Q gi|254780573|r   27 RMYVC--GPTVYDFAHIGNAR-PMIVFDVLYRLLRYYYGEKCVTYVRNITD-IDDKIIERARQEHPSIPINDAISIITSK  102 (461)
Q Consensus        27 ~~Y~C--GpTvy~~~HiG~~r-~~v~~D~l~R~L~~~~~~~~V~~v~niTD-idDkii~~a~~~~~~~~~~~~~~~~a~~  102 (461)
                      +.|++  =|+|-+.+||||+. +++.+|++.||+|..|++  |.|+.+ || =--||..+|+++|++      +.+++++
T Consensus         3 k~~Ittp~Py~NG~lHiGH~~~~~l~aDi~~Ry~rm~G~~--v~~~~G-tDeHG~~i~~~a~~~g~~------p~e~~d~   73 (722)
T 1rqg_A            3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED--VVFICG-TDEHGTPISFRALKEGRS------PREIVDE   73 (722)
T ss_dssp             EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE-EBCCSHHHHHHHHHHTCC------HHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECE-ECCCHHHHHHHHHHCCCC------HHHHHHH
T ss_conf             4999658989898856674333789999999999807995--586386-662079999999982999------9999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC---C---------------C
Q ss_conf             999999987762685410001235--6777789999987411432012892875220024---5---------------4
Q gi|254780573|r  103 NTQQFVKDTTRLACLAPTHQPRAT--NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---N---------------Y  162 (461)
Q Consensus       103 ~~~~f~~d~~~L~v~~p~~~pr~t--~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~---~---------------Y  162 (461)
                      |.+.|.+.++.|||.. |.+-|.|  .|.....++..+|.++|+-|.....+++++..-.   +               |
T Consensus        74 ~~~~~~~~~~~lgis~-D~f~rT~~~~~~~~v~~~f~~L~~~G~Iy~~~~~~~yc~~~~~~l~d~~v~g~cp~~~~~d~~  152 (722)
T 1rqg_A           74 FHEQIKITFQRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQK  152 (722)
T ss_dssp             HHHHHHHHHHHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCC
T ss_pred             HHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHEECCCCCCCCCCCC
T ss_conf             9999999999839805-589757998999999999999997799831463545677635261562034524665654455


Q ss_pred             CCC---CCC--CHHHHH------HHHHCCCCCCCC------CCCCE-------EEEECC---------CCCCCEE----E
Q ss_conf             322---467--546666------432102222101------23512-------666337---------7666314----1
Q gi|254780573|r  163 GSF---SRR--KIDEQK------MGTRVPEKYHKK------NPADF-------ILWKRS---------TPMEPGW----E  205 (461)
Q Consensus       163 G~L---s~~--~~~~~~------~g~r~~~~~~K~------~p~DF-------aLWK~~---------~~~e~~w----~  205 (461)
                      |.-   .+.  ..+++.      .|..++....+.      .-.|.       .-|++.         ..+-.-|    +
T Consensus       153 g~~c~~~~~~~~~~~~~~p~c~r~~~~ve~~~~~qwF~kl~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~l~Dw~ISRq  232 (722)
T 1rqg_A          153 GDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRD  232 (722)
T ss_dssp             TTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEEC
T ss_pred             CCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             54202457746720036885577797406985133443068888888652025799812323110443057633222344


Q ss_pred             CCCCCCCCCCCCH-HH------------HHH-------------------HHHCCCCEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             4677667643320-47------------777-------------------875298414874135666687513668888
Q gi|254780573|r  206 SPWGRGRPGWHIE-CS------------AMS-------------------SHYLGKVFDIHGGGLDLIFPHHENEIAQSC  253 (461)
Q Consensus       206 spwG~GRPGWHiE-Cs------------am~-------------------~~~lg~~~DIH~GG~DL~FPHHENEiAQs~  253 (461)
                      -+||---|.|.-+ |.            -++                   ...-+.+.++|..|-|.+++|.---.|...
T Consensus       233 ~~WGipiP~~~~~~~~~v~yvw~da~~~y~s~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~gkDi~~fh~~~~pa~l~  312 (722)
T 1rqg_A          233 LNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLM  312 (722)
T ss_dssp             CSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCHHHHH
T ss_conf             77753978335789985999843454210000134531149820566764213688423775257635442031369998


Q ss_pred             HHCC--------CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCH
Q ss_conf             6408--------7530121003432576420223323321408998502533455777999999984256-643211450
Q gi|254780573|r  254 CADR--------IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH-YREPIDFTV  324 (461)
Q Consensus       254 a~~~--------~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLssh-YRspLdfS~  324 (461)
                      +...        .-++-+..+++|+|+.+|+|||||+||+|.+.|++       ..|+++++||+|++.. ..+..+|++
T Consensus       313 ~~G~~~~~~~~~~~~~~~~v~~hg~l~~~G~KMSKS~GNvIdp~dli-------~~ygaD~lR~~l~~~~~~~~d~df~~  385 (722)
T 1rqg_A          313 AYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFL-------DVFPADYLRYYLTTIMPETRDSDFSF  385 (722)
T ss_dssp             TTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHT-------TTSCHHHHHHHHHHTCCSSSCEEECH
T ss_pred             HCCCCCCCCCCCCCCCCEEEEECCEEEECCCEEECCCCCCCCHHHHH-------HHCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             73743002223456785289864189616854110378737889987-------50582789999997088877753027


Q ss_pred             HHHHHHHH--HHHHCCCCCC---------------CCCCC---CHHH----------HHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             34687776--4321000013---------------51005---9677----------63021101279999999999997
Q gi|254780573|r  325 QRLTEAEI--LLSKWPQTST---------------SKGII---DPAV----------LSALYNDLNTVSAIQALHKLARE  374 (461)
Q Consensus       325 e~L~~A~~--~l~kl~~~~~---------------~~~~~---~~~f----------~~AL~DDLNTp~ALa~L~~lvk~  374 (461)
                      +.+....+  ..+++.++..               .....   +..+          .....+.++...|+.+++++++.
T Consensus       386 ~~~~~~~n~~l~~~l~N~~~r~~~~~~k~~~~~~p~~~~~~~~d~~il~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~  465 (722)
T 1rqg_A          386 SDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASF  465 (722)
T ss_dssp             HHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999988887765547999999745521478778731000246999999999999999998635899999999999999


Q ss_pred             HCC
Q ss_conf             513
Q gi|254780573|r  375 STK  377 (461)
Q Consensus       375 ~n~  377 (461)
                      .|.
T Consensus       466 ~n~  468 (722)
T 1rqg_A          466 GNR  468 (722)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999