HHsearch results for GI: 254780573 and protein with PDBid: 2csx_A
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=0 Score=402.05 Aligned_cols=336 Identities=17% Similarity=0.151 Sum_probs=241.6
Q ss_pred EEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 79996167888--8444111279999999999999707998457996055233888999987089864488489999999
Q gi|254780573|r 26 IRMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461)
Q Consensus 26 v~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461)
-+.|+|+|++| +.+||||||+||.+|+++||||.+||+ |.||+|+||+||||+.+|+++|++ +.+++++|
T Consensus 5 ~~~~i~~~~py~nG~lHlGHa~~~i~~Di~~R~~r~~G~~--V~~v~g~Dd~g~~i~~~a~~~g~~------~~e~~~~~ 76 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYD--VFFLTGTDEHGLKIQKKAEELGIS------PKELVDRN 76 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEECCSHHHHTHHHHSSSC------HHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHCCCC------HHHHHHHH
T ss_conf 8879968998888971001048799999999999823998--756475341669999999985999------99999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCC--CCCCCCCCHH---------
Q ss_conf 999999877626854100-0123567777899999874114320128928752200245--4322467546---------
Q gi|254780573|r 104 TQQFVKDTTRLACLAPTH-QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--YGSFSRRKID--------- 171 (461)
Q Consensus 104 ~~~f~~d~~~L~v~~p~~-~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~--YG~Ls~~~~~--------- 171 (461)
++.|.+++++|+|..+.. .+...+|+..+..++.+|.++|+.|+....|+++.+.... ++.+......
T Consensus 77 ~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~l~~~g~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (497)
T 2csx_A 77 AERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY 156 (497)
T ss_dssp HHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 99999999985988876762588787655889999987626600010252234243433560232035655544445213
Q ss_pred ---------------HHH----H-HHHCCCCC--------CCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHH
Q ss_conf ---------------666----4-32102222--------1012351266633776663141467766764332047777
Q gi|254780573|r 172 ---------------EQK----M-GTRVPEKY--------HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 (461)
Q Consensus 172 ---------------~~~----~-g~r~~~~~--------~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~ 223 (461)
.+. . +..+.... .++...|+.++.......-+.+.|+..|.+.|+..|+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~wgi~~p~~~~~~~~~~~d~~~~ 236 (497)
T 2csx_A 157 IKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFN 236 (497)
T ss_dssp -CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 67875032313208999999984997648588999999999703643577754224688867777899620201133322
Q ss_pred HHHC-------CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCC
Q ss_conf 8752-------984148741356666875136688886408753012100343257642022332332140899850253
Q gi|254780573|r 224 SHYL-------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 (461)
Q Consensus 224 ~~~l-------g~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~ 296 (461)
.... +.+.|||+||.|++||||+|++||+.|+.. ++.++|+|+||++++|+|||||+||+|++.|++
T Consensus 237 ~~~~~~~~~~~~~p~di~~~G~D~~~~h~~~~~a~~~a~~~--~~p~~~~~~g~~~~~G~KmSKS~gn~i~~~~~l---- 310 (497)
T 2csx_A 237 YISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGY--ELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVV---- 310 (497)
T ss_dssp HHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTC--CCCSCEEEECCEESSSSBCCTTTTCCCCHHHHH----
T ss_pred CHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC--CCCCEEEECCCEEECCCCCCCCCCCCCCHHHHH----
T ss_conf 11120011244788722306765300579999999998499--999889855848636852335688657999998----
Q ss_pred CCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHH--HHHCCCCC-------CC-----C-CCC----------CHH
Q ss_conf 3455777999999984-256643211450346877764--32100001-------35-----1-005----------967
Q gi|254780573|r 297 FGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAEIL--LSKWPQTS-------TS-----K-GII----------DPA 350 (461)
Q Consensus 297 ~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~~~--l~kl~~~~-------~~-----~-~~~----------~~~ 350 (461)
+.|+++++||+++ ++.+....+|+++.+.+..+. .+++.... .. . ... ...
T Consensus 311 ---~~~g~D~lR~~l~~~~~~~~d~~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 387 (497)
T 2csx_A 311 ---QEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIK 387 (497)
T ss_dssp ---HHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHH
T ss_pred ---HHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---73298588989986088777655479999999999999998888764443102333210012346789999998887
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7630211012799999999999975130
Q gi|254780573|r 351 VLSALYNDLNTVSAIQALHKLARESTKN 378 (461)
Q Consensus 351 f~~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461)
...++.|+++++.|+..|++++...|..
T Consensus 388 ~~~~~~d~~~f~~Al~~i~~~~~~~N~y 415 (497)
T 2csx_A 388 NYENYMEKVNFYKAIEEILKFTSYLNKY 415 (497)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999887468999999999999999999