HHsearch results for GI: 254780573 and protein with PDBid: 2d5b_A
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=0 Score=386.08 Aligned_cols=335 Identities=17% Similarity=0.150 Sum_probs=246.1
Q ss_pred EEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9996167888--84441112799999999999997079984579960552338889999870898644884899999999
Q gi|254780573|r 27 RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 (461)
Q Consensus 27 ~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~ 104 (461)
+.|+|+|++| +.+||||||+||.+|+++|||+..|++ |.||+|.+|+++||+.+|+++|.+ +.+++++|+
T Consensus 4 ~~~it~~~py~ng~lHiGHa~~~v~~Di~~R~~r~~G~~--V~~v~g~D~~g~~I~~~a~~~g~~------~~e~~~~~~ 75 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR--TFFLTGTDEHGETVYRAAQAAGED------PKAFVDRVS 75 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEECCSHHHHHHHHHHTSC------HHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEECCCCCCCHHHHHHHHHHCCCC------HHHHHHHHH
T ss_conf 789807998889972334058789999999999935995--682086274069999999985999------999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCC---------CCCCCCHH--
Q ss_conf 99999877626854100012356--777789999987411432012892875220024543---------22467546--
Q gi|254780573|r 105 QQFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG---------SFSRRKID-- 171 (461)
Q Consensus 105 ~~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG---------~Ls~~~~~-- 171 (461)
++|.++|++|||. ++.++|+++ |+.....++++|+++|++|+....|||++..-.-+. .+++...+
T Consensus 76 ~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~l~~~G~~y~~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~ 154 (500)
T 2d5b_A 76 GRFKRAWDLLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERR 154 (500)
T ss_dssp HHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEE
T ss_pred HHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf 9999999995998-887853698788778999888898669831342674121254432248876420012356773773
Q ss_pred ----------HHHH--HHHCCC-------CC---CCCCCCCEEEEECCCCCCCEEECCCCCCCCCC--CCHHHHHHH---
Q ss_conf ----------6664--321022-------22---10123512666337766631414677667643--320477778---
Q gi|254780573|r 172 ----------EQKM--GTRVPE-------KY---HKKNPADFILWKRSTPMEPGWESPWGRGRPGW--HIECSAMSS--- 224 (461)
Q Consensus 172 ----------~~~~--g~r~~~-------~~---~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGW--HiECsam~~--- 224 (461)
+... ...... .. .........|+. .....+.|.+|||.++||| |+.|+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-~~~~~~~~~~~wg~~~P~~~~~~~~vWfds~~~ 233 (500)
T 2d5b_A 155 KEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGD-LSISRPKSRVPWGIPLPWDENHVTFVWFDALLN 233 (500)
T ss_dssp EEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCC-EECEEETTTCCSSCEETTEEEEEECHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 1541344466665678887651753246066688888666531500-277776666887666889988777753654333
Q ss_pred ------------HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf ------------75298414874135666687513668888640875301210034325764202233233214089985
Q gi|254780573|r 225 ------------HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 (461)
Q Consensus 225 ------------~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL 292 (461)
...+...++|.+|.|++|+|+++++||+.++.. .++.++|+|+++|+.+|+|||||+||+|++.|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-~~~~~~~~hg~~l~~~G~KMSKS~gN~i~~~ell 312 (500)
T 2d5b_A 234 YVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGI-PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALL 312 (500)
T ss_dssp HHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTC-CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHH
T ss_pred HHHHHCCCCHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHCCC-CCCCCEECCCCEEEECCCEEECCCCCCCCHHHHH
T ss_conf 155635760656650350121230234466500577678774388-7774111146445425645505488738899998
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHH--HHHCCC-------CCC------CCC-----CCC---
Q ss_conf 02533455777999999984256-643211450346877764--321000-------013------510-----059---
Q gi|254780573|r 293 ETKKFGGRSWPAPVIRLAMLMTH-YREPIDFTVQRLTEAEIL--LSKWPQ-------TST------SKG-----IID--- 348 (461)
Q Consensus 293 ~~~~~~~k~y~p~viR~~lLssh-YRspLdfS~e~L~~A~~~--l~kl~~-------~~~------~~~-----~~~--- 348 (461)
+.|+++++||++++++ +....+|+++.+...... .+++.+ ... ... .+.
T Consensus 313 -------~~~g~D~lR~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (500)
T 2d5b_A 313 -------EKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGT 385 (500)
T ss_dssp -------HHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGG
T ss_pred -------HHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf -------7223598999876137877765557899999999999999989999999976640267788731078888899
Q ss_pred --HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf --6776302110127999999999999751306
Q gi|254780573|r 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNH 379 (461)
Q Consensus 349 --~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~ 379 (461)
.....++.|+++++.|+..++++++.+|+-.
T Consensus 386 ~~~~~~~~~~d~~~~~~a~~~i~~~v~~~N~yi 418 (500)
T 2d5b_A 386 GLAGRLRPLVRELKFHVALEEAMAYVKALNRYI 418 (500)
T ss_dssp GHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998899999999999999999999