Query gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 461 No_of_seqs 202 out of 2774 Neff 6.4 Searched_HMMs 23785 Date Tue May 31 20:55:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780573.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1li5_A Cysrs, cysteinyl-tRNA s 100.0 0 0 1151.3 33.6 435 4-460 1-461 (461) 2 3c8z_A Cysteinyl-tRNA syntheta 100.0 0 0 982.3 33.0 379 2-396 18-414 (414) 3 2csx_A Methionyl-tRNA syntheta 100.0 0 0 402.0 17.0 336 26-378 5-415 (497) 4 2d5b_A Methionyl-tRNA syntheta 100.0 0 0 386.1 15.0 335 27-379 4-418 (500) 5 2x1l_A Methionyl-tRNA syntheta 100.0 2.8E-45 0 343.1 16.0 339 22-378 8-435 (524) 6 3kfl_A Methionyl-tRNA syntheta 100.0 4.6E-43 0 326.6 15.9 349 8-379 9-464 (564) 7 3h99_A Methionyl-tRNA syntheta 100.0 8.5E-39 3.6E-43 296.1 18.1 333 23-377 17-466 (560) 8 1irx_A Lysyl-tRNA synthetase; 100.0 4.2E-37 1.8E-41 284.0 12.4 289 23-326 16-321 (523) 9 1rqg_A Methionyl-tRNA syntheta 99.9 2.9E-26 1.2E-30 206.5 18.0 334 27-377 3-468 (722) 10 1gax_A Valrs, valyl-tRNA synth 99.9 1.2E-24 4.9E-29 195.0 19.7 341 22-373 30-642 (862) 11 1wz2_A Leucyl-tRNA synthetase; 99.9 1.4E-22 5.8E-27 180.2 20.7 105 230-341 603-708 (967) 12 3fnr_A Arginyl-tRNA synthetase 99.9 1.5E-21 6.1E-26 172.9 23.8 282 22-328 28-329 (464) 13 1ffy_A Isoleucyl-tRNA syntheta 99.9 3.2E-22 1.3E-26 177.6 17.5 336 28-373 52-713 (917) 14 1wkb_A Leucyl-tRNA synthetase; 99.9 8.3E-23 3.5E-27 181.8 12.8 106 230-342 603-709 (810) 15 1ile_A Ilers, isoleucyl-tRNA s 99.8 2.2E-19 9.1E-24 157.4 17.8 134 230-372 544-711 (821) 16 2v0c_A Aminoacyl-tRNA syntheta 99.8 1.2E-17 5.1E-22 144.9 19.4 127 22-156 31-160 (878) 17 1iq0_A Arginyl-tRNA synthetase 99.7 1.8E-15 7.6E-20 129.4 19.9 300 21-329 100-464 (592) 18 1nzj_A Hypothetical protein YA 99.6 1.7E-13 7.3E-18 115.2 16.1 240 31-332 10-276 (298) 19 2o5r_A Glutamyl-tRNA synthetas 99.5 1.4E-11 5.9E-16 101.6 20.3 248 32-321 19-299 (481) 20 1f7u_A Arginyl-tRNA synthetase 99.5 4.3E-11 1.8E-15 98.1 22.5 259 22-329 141-480 (607) 21 2cfo_A Glutamyl-tRNA synthetas 99.5 1E-11 4.4E-16 102.5 17.8 253 32-320 7-283 (492) 22 3aii_A Glutamyl-tRNA synthetas 99.5 6.1E-12 2.6E-16 104.1 16.3 274 16-332 85-394 (553) 23 2ja2_A Glutamyl-tRNA synthetas 99.5 8.4E-12 3.5E-16 103.2 17.0 250 31-319 11-292 (498) 24 2zue_A Arginyl-tRNA synthetase 99.4 7.8E-10 3.3E-14 89.1 21.8 286 22-329 117-498 (629) 25 2hz7_A Glutaminyl-tRNA synthet 99.3 1.9E-11 8E-16 100.6 11.2 266 25-330 66-370 (851) 26 1j09_A Glutamyl-tRNA synthetas 99.3 6.2E-09 2.6E-13 82.6 22.2 235 32-319 7-278 (468) 27 3al0_C Glutamyl-tRNA(Gln) amid 99.2 8E-10 3.4E-14 89.0 14.9 225 31-319 134-394 (592) 28 3afh_A Glutamyl-tRNA synthetas 99.2 2E-09 8.3E-14 86.2 14.7 251 5-319 6-290 (488) 29 1qtq_A GLNRS, protein (glutami 99.1 4E-10 1.7E-14 91.2 9.5 256 32-333 32-333 (553) 30 2dlc_X Tyrosyl-tRNA synthetase 97.7 0.00028 1.2E-08 49.4 9.7 214 23-319 37-257 (394) 31 2cyb_A Tyrosyl-tRNA synthetase 97.3 0.0021 8.7E-08 43.2 9.2 79 221-316 161-241 (323) 32 3i05_A Tryptophanyl-tRNA synth 97.2 0.0033 1.4E-07 41.7 9.9 186 24-289 77-282 (395) 33 2cyc_A Tyrosyl-tRNA synthetase 96.8 0.0076 3.2E-07 39.2 8.6 87 220-321 170-283 (375) 34 1yi8_B Tryptophanyl-tRNA synth 96.6 0.0017 7.2E-08 43.8 4.4 83 220-316 152-242 (351) 35 2cya_A Tyrosyl-tRNA synthetase 96.6 0.0028 1.2E-07 42.2 5.5 215 23-319 33-268 (364) 36 2g36_A Tryptophanyl-tRNA synth 96.6 0.0033 1.4E-07 41.7 5.3 85 220-317 143-233 (340) 37 1h3f_A Tyrosyl-tRNA synthetase 96.4 0.0082 3.5E-07 38.9 6.8 56 230-289 187-244 (432) 38 3m5w_A Tryptophanyl-tRNA synth 96.4 0.00081 3.4E-08 46.1 1.3 203 26-314 4-217 (322) 39 2zp1_A Tyrosyl-tRNA synthetase 96.1 0.0039 1.6E-07 41.3 3.4 201 22-314 25-229 (314) 40 1n3l_A Tyrosyl-tRNA synthetase 96.0 0.013 5.3E-07 37.6 5.8 85 220-323 168-256 (372) 41 3n9i_A Tryptophanyl-tRNA synth 95.1 0.091 3.8E-06 31.5 7.7 205 27-314 17-235 (346) 42 2pid_A Tyrosyl-tRNA synthetase 94.6 0.012 4.9E-07 37.9 1.9 70 230-313 210-281 (356) 43 2yxn_A Tyrosyl-tRNA synthetase 93.3 0.034 1.4E-06 34.5 2.3 70 230-313 191-262 (322) 44 2yy5_A Tryptophanyl-tRNA synth 93.3 0.068 2.9E-06 32.3 3.8 208 30-315 8-231 (348) 45 3jxe_A Tryptophanyl-tRNA synth 91.7 0.74 3.1E-05 24.9 9.4 76 24-119 72-148 (392) 46 3hv0_A Tryptophanyl-tRNA synth 91.2 0.83 3.5E-05 24.6 7.5 91 25-134 74-166 (393) 47 1y42_X Tyrosyl-tRNA synthetase 90.6 0.053 2.2E-06 33.1 0.7 63 230-292 232-308 (392) 48 1r6t_A Tryptophanyl-tRNA synth 89.4 1.2 4.9E-05 23.5 9.1 75 24-118 154-229 (477) 49 1r6u_A Tryptophanyl-tRNA synth 89.2 1.2 5.1E-05 23.4 8.6 75 24-118 107-182 (437) 50 1jil_A Tyrrs, tyrosyl-tRNA syn 87.0 0.17 7.4E-06 29.4 1.3 68 217-290 166-244 (420) 51 2jan_A Tyrosyl-tRNA synthetase 80.4 1.3 5.3E-05 23.3 3.4 54 231-289 188-244 (432) 52 3hzr_A Tryptophanyl-tRNA synth 77.6 3.6 0.00015 20.0 9.6 197 25-313 82-294 (386) 53 2ts1_A Tyrosyl-tRNA synthetase 77.5 0.63 2.6E-05 25.4 1.1 68 217-290 165-243 (419) 54 2ip1_A Tryptophanyl-tRNA synth 76.6 3.8 0.00016 19.9 8.0 77 24-119 101-178 (432) 55 3foc_A Tryptophanyl-tRNA synth 69.4 5.5 0.00023 18.7 6.9 77 24-119 90-167 (451) 56 2el7_A Tryptophanyl-tRNA synth 63.4 1.2 4.9E-05 23.5 -0.1 82 220-314 131-220 (337) 57 1e52_A Excinuclease ABC subuni 62.8 6.2 0.00026 18.3 3.5 36 403-438 20-55 (63) 58 3io1_A Aminobenzoyl-glutamate 62.6 7.4 0.00031 17.8 4.3 15 49-63 36-50 (445) 59 1kam_A Deamido-NAD(+), nicotin 60.8 7.9 0.00033 17.6 3.8 35 20-63 3-37 (194) 60 2x1l_A Methionyl-tRNA syntheta 59.4 0.33 1.4E-05 27.4 -3.4 45 209-253 218-263 (524) 61 2j5b_A Tyrosyl-tRNA synthetase 57.3 9 0.00038 17.2 6.3 85 25-128 40-126 (348) 62 3elb_A Ethanolamine-phosphate 54.4 4.7 0.0002 19.2 1.8 46 24-84 6-51 (341) 63 3hl4_A Choline-phosphate cytid 53.1 5.3 0.00022 18.8 1.9 49 23-84 74-122 (236) 64 1ysj_A Protein YXEP; M20 famil 49.6 12 0.0005 16.3 6.6 13 50-62 55-67 (404) 65 2h29_A Probable nicotinate-nuc 46.2 13 0.00056 16.0 3.9 38 25-72 3-40 (189) 66 3a1f_A Cytochrome B-245 heavy 45.0 9.3 0.00039 17.1 2.0 21 211-231 128-148 (186) 67 2qdx_A Ferredoxin reductase; o 42.1 8.6 0.00036 17.3 1.5 14 430-443 226-239 (257) 68 1wj5_A Hypothetical protein (r 36.6 14 0.00057 15.9 1.8 34 128-161 75-112 (120) 69 1coz_A Protein (glycerol-3-pho 36.2 10 0.00044 16.7 1.2 40 27-81 3-42 (129) 70 2bmw_A Ferredoxin--NADP reduct 33.8 13 0.00056 16.0 1.4 19 427-445 285-303 (304) 71 1fnb_A Ferredoxin-NADP+ reduct 31.9 16 0.00067 15.4 1.6 20 426-445 294-313 (314) 72 1i6k_A TRPRS, tryptophanyl-tRN 31.2 22 0.00093 14.4 7.7 188 27-285 3-200 (328) 73 1cqx_A Flavohemoprotein; globi 30.8 23 0.00095 14.3 3.2 14 112-126 86-99 (403) 74 1l1s_A Hypothetical protein MT 30.6 16 0.00066 15.4 1.3 39 109-148 74-112 (113) 75 2r6h_A NADH:ubiquinone oxidore 30.1 23 0.00097 14.3 3.8 14 143-156 36-49 (290) 76 1h8l_A Carboxypeptidase GP180 29.6 19 0.00081 14.8 1.7 45 203-247 143-191 (380) 77 1wh7_A ZF-HD homeobox family p 29.3 17 0.0007 15.3 1.3 27 244-270 46-73 (80) 78 2pd2_A Hypothetical protein ST 28.4 18 0.00074 15.1 1.3 39 109-148 69-107 (108) 79 1yum_A 'probable nicotinate-nu 27.4 26 0.0011 13.9 4.0 57 7-73 6-62 (242) 80 1taf_A TFIID TBP associated fa 27.1 26 0.0011 13.9 3.5 33 70-115 14-46 (68) 81 1gvh_A Flavohemoprotein; oxido 26.1 27 0.0011 13.8 5.0 22 107-129 81-102 (396) 82 2qvw_A GLP_546_48378_50642; di 25.4 20 0.00083 14.7 1.1 58 123-210 268-325 (756) 83 2b5o_A FNR, ferredoxin--NADP r 23.8 23 0.00096 14.3 1.2 19 427-445 383-401 (402) 84 3glv_A Lipopolysaccharide core 23.2 24 0.001 14.2 1.2 27 24-58 1-27 (143) 85 1z5r_A Procarboxypeptidase B; 22.9 31 0.0013 13.4 1.9 39 206-244 156-204 (306) 86 2rc5_A Ferredoxin-NADP reducta 21.8 29 0.0012 13.6 1.3 15 430-444 298-312 (314) 87 3h05_A Uncharacterized protein 21.3 25 0.001 14.0 0.9 18 25-45 3-20 (177) 88 2g5c_A Prephenate dehydrogenas 21.2 33 0.0014 13.1 1.8 85 53-161 16-100 (281) 89 2phn_A F420-0:gamma-glutamyl l 20.6 34 0.0014 13.1 1.8 51 203-254 154-206 (254) 90 1qfj_A Protein (flavin reducta 20.5 31 0.0013 13.3 1.3 21 11-31 3-23 (232) 91 3bz1_H PSII-H, photosystem II 20.4 26 0.0011 13.9 0.9 15 204-218 14-28 (66) 92 2qtr_A Nicotinate (nicotinamid 20.2 23 0.00095 14.3 0.5 30 25-63 3-32 (189) 93 3lo8_A Ferredoxin--NADP reduct 20.1 29 0.0012 13.6 1.1 20 426-445 291-310 (311) No 1 >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Probab=100.00 E-value=0 Score=1151.29 Aligned_cols=435 Identities=41% Similarity=0.736 Sum_probs=405.1 Q ss_pred CCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH Q ss_conf 74189888982622330479847999616788884441112799999999999997079984579960552338889999 Q gi|254780573|r 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 (461) Q Consensus 4 ~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a 83 (461) .|+|||||||++|+|+|+++++|+||+|||||||++||||||+||+||+|+|||++.||+ |+||+||||||||||++| T Consensus 1 ml~lyntlt~~~e~f~p~~~~~v~~Y~CGpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~--V~~v~nitDiddKi~~~A 78 (461) T 1li5_A 1 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK--LKYVRNITDIDDKIIKRA 78 (461) T ss_dssp CCEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCE--EEEEECBBCCSHHHHHHH T ss_pred CCEEEECCCCCCCCEECCCCCEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHHHHH T ss_conf 964772798873200338999589994688578984410140299999999999975995--189974161238999999 Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCC Q ss_conf 87089864488489999999999999877626854100012356777789999987411432012-89287522002454 Q gi|254780573|r 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNY 162 (461) Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~Y 162 (461) +++|++ +.++|++|++.|++||++|||.+|+++||||+||++||++|++|+++|+||.. +|+|||||++|++| T Consensus 79 ~~~g~~------~~e~~~~~~~~f~~~~~~L~i~~~~~~~r~t~~i~~~i~~i~~L~~~g~aY~~~~g~vyf~~~~~~~y 152 (461) T 1li5_A 79 NENGES------FVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTY 152 (461) T ss_dssp HHTTCC------HHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTT T ss_pred HHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCC T ss_conf 984959------99999999999999999957999987411148999999999999867988972688673356553011 Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 32246754666643210222210123512666337766631414677667643320477778752984148741356666 Q gi|254780573|r 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 (461) Q Consensus 163 G~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F 242 (461) |+||++++++++.|+|++.+..||||.||||||++++|||.|+||||+||||||||||||+.++||++||||+||+||+| T Consensus 153 g~l~~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~e~~w~spWG~grPgWhiecs~m~~~~lg~~~Dih~gG~Dl~f 232 (461) T 1li5_A 153 GVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMF 232 (461) T ss_dssp TTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCCCHHHCC T ss_conf 55110020001246765656567883646653878899876678877558972667589999882705322657541068 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 87513668888640875301210034325764202233233214089985025334557779999999842566432114 Q gi|254780573|r 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 (461) Q Consensus 243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdf 322 (461) ||||||+|||+|+++ .+||+||||+|||+++|+||||||||+++++|++ ++|+|+++|||||++|||+||+| T Consensus 233 pHhene~aq~~a~~g-~~~~~~w~h~g~~~~~g~KMSKSlgn~~~~~~~~-------~~~~~~~~R~~lLs~hYR~pl~f 304 (461) T 1li5_A 233 PHHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNY 304 (461) T ss_dssp THHHHHHHHHHHHSS-SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHH-------TTSCHHHHHHHHHSSCTTSCEEE T ss_pred CCCCCHHHHHHHHHC-CCCCHHHHHCCCCCCCCCCCCCCCCCEEEHHHHH-------CCCCHHHHHHHHHHCCCCCCCCC T ss_conf 864359999998755-8850077635822258764464468874488864-------12776999999985367886445 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHH Q ss_conf 50346877764321000013510---------0596776302110127999999999999751306--------799999 Q gi|254780573|r 323 TVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIF 385 (461) Q Consensus 323 S~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~ 385 (461) |++.|++|++.++|++.+..... .+.+.|.+||+||||||.|+++|+++++.+|+.. .....+ T Consensus 305 s~e~L~~A~~~l~rl~~~l~~~~~~~~~~~~~~~~~~f~~aL~DDlNTp~Ala~l~~lvk~in~~~~~~~~~~~~~~~~L 384 (461) T 1li5_A 305 SEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHL 384 (461) T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCTTSCCCSCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 70469999999999999998555214752112589999999876226799999999999998752233589999999999 Q ss_pred HHHHHHCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE Q ss_conf 999987176743200--------014678999999999999988179899999999999889799986998877860488 Q gi|254780573|r 386 NASAHILGIEVCKEH--------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 (461) Q Consensus 386 ~~~~~iLGl~~~~~~--------~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~W 457 (461) ..++.|||+...... .....+.+|+.||++|++||++|||++||+||++|.++||+|+|+++| |+| T Consensus 385 ~~~~~vLGll~~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~Kdf~~AD~IRdeL~~~GI~leD~~~G------t~W 458 (461) T 1li5_A 385 RKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG------TTW 458 (461) T ss_dssp HHHHTTTTCSCSCHHHHC-------------------------------------------------------------- T ss_pred HHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------EEE T ss_conf 99999637887587788633666664569999999999999997689889999999999779799974998------289 Q ss_pred EEC Q ss_conf 724 Q gi|254780573|r 458 KQK 460 (461) Q Consensus 458 k~k 460 (461) ++| T Consensus 459 ~~k 461 (461) T 1li5_A 459 RRK 461 (461) T ss_dssp --- T ss_pred EEC T ss_conf 769 No 2 >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Probab=100.00 E-value=0 Score=982.26 Aligned_cols=379 Identities=31% Similarity=0.563 Sum_probs=354.2 Q ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH Q ss_conf 88741898889826223304798479996167888844411127999999999999970799845799605523388899 Q gi|254780573|r 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 (461) Q Consensus 2 ~~~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~ 81 (461) .+.|+|||||||++|+|+| +++|+||+|||||||++||||+|+||+||+|+|+|++.||+ |+||+||||||||||+ T Consensus 18 ~~~l~lyntlt~~~~~~~p--~~~v~~Y~CGpTvy~~~HIGhaRt~v~~D~l~R~L~~~G~~--V~~v~nitDiddKIi~ 93 (414) T 3c8z_A 18 GPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHT--VQYVQNVTDVDDPLFE 93 (414) T ss_dssp CCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEECCSCHHHHH T ss_pred CCCEEEEECCCCCEEECCC--CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHH T ss_conf 9965999889897563678--89515985899778886400032699999999999985996--6998656853389999 Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CEEECCH Q ss_conf 998708986448848999999999999987762685410001235677778999998741143201289----2875220 Q gi|254780573|r 82 RARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTS 157 (461) Q Consensus 82 ~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g----~VyFdv~ 157 (461) +|+++|++ +.|+|++|++.|+++|++|||++|+.+|||||||++||.+|++|+++|+||+++| +|||+|+ T Consensus 94 ~A~~~g~~------~~e~a~~~~~~f~~~~~~L~i~~~~~~~rate~i~~ii~~i~~l~~kg~aY~~~~~~~~~vyf~~~ 167 (414) T 3c8z_A 94 RAERDGID------WRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRAD 167 (414) T ss_dssp HHHHHTCC------HHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTT T ss_pred HHHHCCCC------HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC T ss_conf 98754999------999999999999999987468999566314002999999999986423200126875542799830 Q ss_pred HCCCCCCCCCCCHHHHHHHHHC----CCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE Q ss_conf 0245432246754666643210----222210123512666337766631414677667643320477778752984148 Q gi|254780573|r 158 SIPNYGSFSRRKIDEQKMGTRV----PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 (461) Q Consensus 158 ~~~~YG~Ls~~~~~~~~~g~r~----~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DI 233 (461) ++++||+||+++.+++..+.+. ...+.|+||.||+|||++++++|.|+||||+||||||||||||+.++||.+||| T Consensus 168 ~~~~yg~l~~~~~~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~SpwG~GrPgWHiECsam~~~~lg~~~DI 247 (414) T 3c8z_A 168 ATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDI 247 (414) T ss_dssp SSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEE T ss_pred CHHHCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEE T ss_conf 33314742111156665554320243200002587776411026657876348877628846744248887406983357 Q ss_pred EEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC Q ss_conf 74135666687513668888640875301210034325764202233233214089985025334557779999999842 Q gi|254780573|r 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 (461) Q Consensus 234 H~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLs 313 (461) |+||+||+|||||||||||+|+++..+||+||||+|||+++|+|||||+|||++++|+++ ++|+|+++||+||+ T Consensus 248 H~GG~Dl~fPHHeneiAq~~a~~g~~~~~~~w~h~g~l~~~g~KMSKSlGN~~~~~d~l~------~~~~~~~~R~~ll~ 321 (414) T 3c8z_A 248 QGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRA------QGVDPSAIRLGLFS 321 (414) T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHH------TTCCHHHHHHHHHT T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEECCEEEECCCCCCCCCCCCCCHHHHHH------HCCCHHHHHHHHHH T ss_conf 405565566316769999999749974012122333798506467776887031999986------27988998999986 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC-----HHHHH Q ss_conf 56643211450346877764321000013510-----059677630211012799999999999975130-----67999 Q gi|254780573|r 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----HDLLP 383 (461) Q Consensus 314 shYRspLdfS~e~L~~A~~~l~kl~~~~~~~~-----~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~-----~~~~~ 383 (461) +|||+||+||++.|++|++.++||+.+..... ++.++|.+||+||||||.||++||++++.+|+. .+... T Consensus 322 ~hYr~~l~fs~e~l~~a~~~l~rl~~~~~~~~~~~~~~~~~~f~~al~DDlntp~Al~~l~~li~~~n~~~~~d~~~~~~ 401 (414) T 3c8z_A 322 GHYREDRFWSNEVLDEANARLARWRSATALPEAPDATDVIARVRQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRL 401 (414) T ss_dssp SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSSCBSCCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHHHCCSBSSHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 11575113899999999999999999861545675368999999998767885899999999999998645865666999 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999998717674 Q gi|254780573|r 384 IFNASAHILGIEV 396 (461) Q Consensus 384 ~~~~~~~iLGl~~ 396 (461) ++..+..||||++ T Consensus 402 ~~~~~~~vLGl~L 414 (414) T 3c8z_A 402 VATTVDALLGVDL 414 (414) T ss_dssp HHHHHHHHHCCCC T ss_pred HHHHHHHHCCCCC T ss_conf 9999998248779 No 3 >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Probab=100.00 E-value=0 Score=402.05 Aligned_cols=336 Identities=17% Similarity=0.151 Sum_probs=241.6 Q ss_pred EEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 79996167888--8444111279999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 26 IRMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 26 v~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) -+.|+|+|++| +.+||||||+||.+|+++||||.+||+ |.||+|+||+||||+.+|+++|++ +.+++++| T Consensus 5 ~~~~i~~~~py~nG~lHlGHa~~~i~~Di~~R~~r~~G~~--V~~v~g~Dd~g~~i~~~a~~~g~~------~~e~~~~~ 76 (497) T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYD--VFFLTGTDEHGLKIQKKAEELGIS------PKELVDRN 76 (497) T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEECCSHHHHTHHHHSSSC------HHHHHHHH T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHCCCC------HHHHHHHH T ss_conf 8879968998888971001048799999999999823998--756475341669999999985999------99999999 Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCC--CCCCCCCCHH--------- Q ss_conf 999999877626854100-0123567777899999874114320128928752200245--4322467546--------- Q gi|254780573|r 104 TQQFVKDTTRLACLAPTH-QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--YGSFSRRKID--------- 171 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~-~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~--YG~Ls~~~~~--------- 171 (461) ++.|.+++++|+|..+.. .+...+|+..+..++.+|.++|+.|+....|+++.+.... ++.+...... T Consensus 77 ~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~l~~~g~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (497) T 2csx_A 77 AERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY 156 (497) T ss_dssp HHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCC T ss_conf 99999999985988876762588787655889999987626600010252234243433560232035655544445213 Q ss_pred ---------------HHH----H-HHHCCCCC--------CCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHH Q ss_conf ---------------666----4-32102222--------1012351266633776663141467766764332047777 Q gi|254780573|r 172 ---------------EQK----M-GTRVPEKY--------HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 (461) Q Consensus 172 ---------------~~~----~-g~r~~~~~--------~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~ 223 (461) .+. . +..+.... .++...|+.++.......-+.+.|+..|.+.|+..|+.+. T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~wgi~~p~~~~~~~~~~~d~~~~ 236 (497) T 2csx_A 157 IKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFN 236 (497) T ss_dssp -CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC T ss_conf 67875032313208999999984997648588999999999703643577754224688867777899620201133322 Q ss_pred HHHC-------CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCC Q ss_conf 8752-------984148741356666875136688886408753012100343257642022332332140899850253 Q gi|254780573|r 224 SHYL-------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 (461) Q Consensus 224 ~~~l-------g~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~ 296 (461) .... +.+.|||+||.|++||||+|++||+.|+.. ++.++|+|+||++++|+|||||+||+|++.|++ T Consensus 237 ~~~~~~~~~~~~~p~di~~~G~D~~~~h~~~~~a~~~a~~~--~~p~~~~~~g~~~~~G~KmSKS~gn~i~~~~~l---- 310 (497) T 2csx_A 237 YISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGY--ELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVV---- 310 (497) T ss_dssp HHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTC--CCCSCEEEECCEESSSSBCCTTTTCCCCHHHHH---- T ss_pred CHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC--CCCCEEEECCCEEECCCCCCCCCCCCCCHHHHH---- T ss_conf 11120011244788722306765300579999999998499--999889855848636852335688657999998---- Q ss_pred CCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHH--HHHCCCCC-------CC-----C-CCC----------CHH Q ss_conf 3455777999999984-256643211450346877764--32100001-------35-----1-005----------967 Q gi|254780573|r 297 FGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAEIL--LSKWPQTS-------TS-----K-GII----------DPA 350 (461) Q Consensus 297 ~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~~~--l~kl~~~~-------~~-----~-~~~----------~~~ 350 (461) +.|+++++||+++ ++.+....+|+++.+.+..+. .+++.... .. . ... ... T Consensus 311 ---~~~g~D~lR~~l~~~~~~~~d~~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 387 (497) T 2csx_A 311 ---QEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIK 387 (497) T ss_dssp ---HHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHH T ss_pred ---HHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf ---73298588989986088777655479999999999999998888764443102333210012346789999998887 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7630211012799999999999975130 Q gi|254780573|r 351 VLSALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 351 f~~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) ...++.|+++++.|+..|++++...|.. T Consensus 388 ~~~~~~d~~~f~~Al~~i~~~~~~~N~y 415 (497) T 2csx_A 388 NYENYMEKVNFYKAIEEILKFTSYLNKY 415 (497) T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999887468999999999999999999 No 4 >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Probab=100.00 E-value=0 Score=386.08 Aligned_cols=335 Identities=17% Similarity=0.150 Sum_probs=246.1 Q ss_pred EEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 9996167888--84441112799999999999997079984579960552338889999870898644884899999999 Q gi|254780573|r 27 RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 (461) Q Consensus 27 ~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~ 104 (461) +.|+|+|++| +.+||||||+||.+|+++|||+..|++ |.||+|.+|+++||+.+|+++|.+ +.+++++|+ T Consensus 4 ~~~it~~~py~ng~lHiGHa~~~v~~Di~~R~~r~~G~~--V~~v~g~D~~g~~I~~~a~~~g~~------~~e~~~~~~ 75 (500) T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR--TFFLTGTDEHGETVYRAAQAAGED------PKAFVDRVS 75 (500) T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEECCSHHHHHHHHHHTSC------HHHHHHHHH T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEECCCCCCCHHHHHHHHHHCCCC------HHHHHHHHH T ss_conf 789807998889972334058789999999999935995--682086274069999999985999------999999999 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCC---------CCCCCCHH-- Q ss_conf 99999877626854100012356--777789999987411432012892875220024543---------22467546-- Q gi|254780573|r 105 QQFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG---------SFSRRKID-- 171 (461) Q Consensus 105 ~~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG---------~Ls~~~~~-- 171 (461) ++|.++|++|||. ++.++|+++ |+.....++++|+++|++|+....|||++..-.-+. .+++...+ T Consensus 76 ~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~l~~~G~~y~~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~ 154 (500) T 2d5b_A 76 GRFKRAWDLLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERR 154 (500) T ss_dssp HHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEE T ss_pred HHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEE T ss_conf 9999999995998-887853698788778999888898669831342674121254432248876420012356773773 Q ss_pred ----------HHHH--HHHCCC-------CC---CCCCCCCEEEEECCCCCCCEEECCCCCCCCCC--CCHHHHHHH--- Q ss_conf ----------6664--321022-------22---10123512666337766631414677667643--320477778--- Q gi|254780573|r 172 ----------EQKM--GTRVPE-------KY---HKKNPADFILWKRSTPMEPGWESPWGRGRPGW--HIECSAMSS--- 224 (461) Q Consensus 172 ----------~~~~--g~r~~~-------~~---~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGW--HiECsam~~--- 224 (461) +... ...... .. .........|+. .....+.|.+|||.++||| |+.|+.+.. T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-~~~~~~~~~~~wg~~~P~~~~~~~~vWfds~~~ 233 (500) T 2d5b_A 155 KEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGD-LSISRPKSRVPWGIPLPWDENHVTFVWFDALLN 233 (500) T ss_dssp EEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCC-EECEEETTTCCSSCEETTEEEEEECHHHHHHTH T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC T ss_conf 1541344466665678887651753246066688888666531500-277776666887666889988777753654333 Q ss_pred ------------HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHH Q ss_conf ------------75298414874135666687513668888640875301210034325764202233233214089985 Q gi|254780573|r 225 ------------HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 (461) Q Consensus 225 ------------~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL 292 (461) ...+...++|.+|.|++|+|+++++||+.++.. .++.++|+|+++|+.+|+|||||+||+|++.|++ T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-~~~~~~~~hg~~l~~~G~KMSKS~gN~i~~~ell 312 (500) T 2d5b_A 234 YVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGI-PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALL 312 (500) T ss_dssp HHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTC-CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHH T ss_pred HHHHHCCCCHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHCCC-CCCCCEECCCCEEEECCCEEECCCCCCCCHHHHH T ss_conf 155635760656650350121230234466500577678774388-7774111146445425645505488738899998 Q ss_pred CCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHH--HHHCCC-------CCC------CCC-----CCC--- Q ss_conf 02533455777999999984256-643211450346877764--321000-------013------510-----059--- Q gi|254780573|r 293 ETKKFGGRSWPAPVIRLAMLMTH-YREPIDFTVQRLTEAEIL--LSKWPQ-------TST------SKG-----IID--- 348 (461) Q Consensus 293 ~~~~~~~k~y~p~viR~~lLssh-YRspLdfS~e~L~~A~~~--l~kl~~-------~~~------~~~-----~~~--- 348 (461) +.|+++++||++++++ +....+|+++.+...... .+++.+ ... ... .+. T Consensus 313 -------~~~g~D~lR~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (500) T 2d5b_A 313 -------EKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGT 385 (500) T ss_dssp -------HHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGG T ss_pred -------HHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf -------7223598999876137877765557899999999999999989999999976640267788731078888899 Q ss_pred --HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH Q ss_conf --6776302110127999999999999751306 Q gi|254780573|r 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNH 379 (461) Q Consensus 349 --~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~ 379 (461) .....++.|+++++.|+..++++++.+|+-. T Consensus 386 ~~~~~~~~~~d~~~~~~a~~~i~~~v~~~N~yi 418 (500) T 2d5b_A 386 GLAGRLRPLVRELKFHVALEEAMAYVKALNRYI 418 (500) T ss_dssp GHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998899999999999999999999 No 5 >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Probab=100.00 E-value=2.8e-45 Score=343.05 Aligned_cols=339 Identities=17% Similarity=0.186 Sum_probs=242.1 Q ss_pred CCCEEEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf 798479996167888--844411127999999999999970799845799605523388899998708986448848999 Q gi|254780573|r 22 DPSNIRMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~ 99 (461) +.|+-.-|+|-|-+| +.+||||||+||.+|+++||++..|++ |.||+|.-+-.-||+.+|+++|++ +.|+ T Consensus 8 ~~~~~~~~i~~~~Py~nG~lHiGHa~~~~~~Dii~R~~r~~G~~--v~~v~G~D~hG~~i~~~A~k~g~~------~~e~ 79 (524) T 2x1l_A 8 HGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYD--VRYLTGTDVHGQKMAETAAKEGIP------AAEL 79 (524) T ss_dssp ---CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEECCCSHHHHHHHHHHTSC------HHHH T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CEECCCCCCHHHHHHHHHHHCCCC------HHHH T ss_conf 79999989958998888971004027799999999999823997--142581173479999999984999------9999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCC--CCCCCC---HHH Q ss_conf 9999999999877626854100012--356777789999987411432012892875220024543--224675---466 Q gi|254780573|r 100 TSKNTQQFVKDTTRLACLAPTHQPR--ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG--SFSRRK---IDE 172 (461) Q Consensus 100 a~~~~~~f~~d~~~L~v~~p~~~pr--~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG--~Ls~~~---~~~ 172 (461) +++|+++|.++|+.|||.. |.+.| ..+|+..+.+++++|.++|++|+....||+++..-.-+. .+.... ... T Consensus 80 ~~~~~~~~~~~~~~l~i~~-D~~~~T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (524) T 2x1l_A 80 ARRNSDVFQRLQEKLNISF-DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIA 158 (524) T ss_dssp HHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEE T ss_pred HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEC T ss_conf 9999999999999969947-888116988999999999988986494897054145532453352000114568851000 Q ss_pred HHHHHHCCCCCCC-----------------CCCCCEEEEECCC--------CC----CCEEEC-CCCCCCCCC-----CC Q ss_conf 6643210222210-----------------1235126663377--------66----631414-677667643-----32 Q gi|254780573|r 173 QKMGTRVPEKYHK-----------------KNPADFILWKRST--------PM----EPGWES-PWGRGRPGW-----HI 217 (461) Q Consensus 173 ~~~g~r~~~~~~K-----------------~~p~DFaLWK~~~--------~~----e~~w~s-pwG~GRPGW-----Hi 217 (461) ...|..++....+ ++-.||..++..+ .+ .++..+ +||.+.|+| ++ T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~v~~~ 238 (524) T 2x1l_A 159 TETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYV 238 (524) T ss_dssp TTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECH T ss_pred CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE T ss_conf 33698665640564201307779999999984865458566665468876554644455677788899999975633333 Q ss_pred HHHHHHHHHCCC--------------CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCC Q ss_conf 047777875298--------------414874135666687513668888640875301210034325764202233233 Q gi|254780573|r 218 ECSAMSSHYLGK--------------VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 (461) Q Consensus 218 ECsam~~~~lg~--------------~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlG 283 (461) .|+|++..+.+. +.|||.+|.|++||||.+++||+.++ + .++.++|+|+|||+++|+|||||+| T Consensus 239 Wfds~~~~~~~~~~~~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~-~-~~~~~~i~~~g~l~~~G~KMSKSlG 316 (524) T 2x1l_A 239 WVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSA-G-LPLPKRIFAHGWLLNRGEKMSKSIG 316 (524) T ss_dssp HHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHH-T-CCCCSCEEEECCEEECSCSEETTTE T ss_pred ECHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEHHHHHHHHHHHHHHC-C-CCCCCEEEECEEEECCCCEECCCCC T ss_conf 1010023113368886575767724885078831230079999999999847-9-9988589964189638857137799 Q ss_pred CCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH--HHHHCCCCCC---------------CCC Q ss_conf 2140899850253345577799999998425-664321145034687776--4321000013---------------510 Q gi|254780573|r 284 NFITINELLETKKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEAEI--LLSKWPQTST---------------SKG 345 (461) Q Consensus 284 N~iti~dlL~~~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A~~--~l~kl~~~~~---------------~~~ 345 (461) |+|++.|++ +.|+++++||+++++ .+.+..+|+++.+....+ ..+++.+... ... T Consensus 317 N~i~~~~~l-------~~ygaD~lR~~l~~~~~~~~d~~f~~~~~~~~~n~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 389 (524) T 2x1l_A 317 NVVDPVNLV-------DTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPG 389 (524) T ss_dssp ESSCHHHHH-------HHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCC T ss_pred CCCCHHHHH-------HHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 547869999-------8639439999998708767776566899999999999999999998888876521466556520 Q ss_pred CC---CHHH----------HHHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 05---9677----------630211012799999999999975130 Q gi|254780573|r 346 II---DPAV----------LSALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 346 ~~---~~~f----------~~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) .. +..+ .....|++++..|+..|+++++..|.- T Consensus 390 ~~~~~~~~ll~~~~~~~~~~~~~~d~~~~~~Al~~i~~~i~~~N~Y 435 (524) T 2x1l_A 390 EFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRY 435 (524) T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0134565665556777777666677678999999999999999999 No 6 >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Probab=100.00 E-value=4.6e-43 Score=326.57 Aligned_cols=349 Identities=18% Similarity=0.148 Sum_probs=246.2 Q ss_pred EECCCCCEEEEEECCCCEEEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH---HHHHHH Q ss_conf 9888982622330479847999616-788884441112799999999999997079984579960552338---889999 Q gi|254780573|r 8 YNTLERKITEFQAIDPSNIRMYVCG-PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERA 83 (461) Q Consensus 8 yntlt~~~~~f~p~~~~~v~~Y~CG-pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD---kii~~a 83 (461) -+|+..+.-...-+.+.+.=.-++. |.|-+.+||||+|+|+.+|+++||+|..||+ |.|| |+.|| ||+.+| T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~itt~~pY~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~--V~~v---~G~D~hG~~i~~~A 83 (564) T 3kfl_A 9 MGTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEE--VFVM---TGTDEHGQKVAEAA 83 (564) T ss_dssp ---------------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCC--EEEE---EEEECCSHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEEE---CCCCCCHHHHHHHH T ss_conf 132134568997767799889948998888852356668899999999999936997--0340---83687619999999 Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHC-- Q ss_conf 8708986448848999999999999987762685410001235--677778999998741143201289287522002-- Q gi|254780573|r 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT--NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-- 159 (461) Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t--~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~-- 159 (461) +++|++ +.+++++|.++|.++|++|||. .+.+.|.+ +|+....++..+|.++|+.|.....|+++...- T Consensus 84 ~~~g~~------~~e~~~~~~~~~~~~~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~l~~~g~i~~~~~~~~~~~~~~~~ 156 (564) T 3kfl_A 84 AKQGVS------PMDFTTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF 156 (564) T ss_dssp HHTTCC------HHHHHHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE T ss_pred HHCCCC------HHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCC T ss_conf 985999------9999999999999999993981-787821598899999999999712152079603310111134220 Q ss_pred ----------CCCCCCCCC------------------CH----HHHH---HHHHCC----------CCCCCCCCCCEEEE Q ss_conf ----------454322467------------------54----6666---432102----------22210123512666 Q gi|254780573|r 160 ----------PNYGSFSRR------------------KI----DEQK---MGTRVP----------EKYHKKNPADFILW 194 (461) Q Consensus 160 ----------~~YG~Ls~~------------------~~----~~~~---~g~r~~----------~~~~K~~p~DFaLW 194 (461) +.+|..... ++ +.+. ...... ...-++.+.|...+ T Consensus 157 l~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~ 236 (564) T 3kfl_A 157 LTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSIS 236 (564) T ss_dssp ECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECE T ss_pred CCHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 32777522121013333212356875434145750100245699999999848775473788888888763001202566 Q ss_pred ECCCCCCCEEECCC-CCCCCCCCCHHHHHHHHHCC----------------------CCEEEEEECCCCCCCCCHHHHHH Q ss_conf 33776663141467-76676433204777787529----------------------84148741356666875136688 Q gi|254780573|r 195 KRSTPMEPGWESPW-GRGRPGWHIECSAMSSHYLG----------------------KVFDIHGGGLDLIFPHHENEIAQ 251 (461) Q Consensus 195 K~~~~~e~~w~spw-G~GRPGWHiECsam~~~~lg----------------------~~~DIH~GG~DL~FPHHENEiAQ 251 (461) .. ....+.|..|+ |.++++||++|.||...+.+ .+.|||.+|.|++|.|...-.|+ T Consensus 237 ~~-~~~~~~WGipvP~~~~~~~~vw~da~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~p~~i~~~G~D~~~fh~~~~~~~ 315 (564) T 3kfl_A 237 RK-RESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAF 315 (564) T ss_dssp EE-GGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHH T ss_pred CC-CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 76-77889988757889985589961667677887653012356644440166625486402343666200114588888 Q ss_pred HHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHH Q ss_conf 88640875301210034325764202233233214089985025334557779999999842-56643211450346877 Q gi|254780573|r 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM-THYREPIDFTVQRLTEA 330 (461) Q Consensus 252 s~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLs-shYRspLdfS~e~L~~A 330 (461) +.+.. .++.++|+|+|+++++|+|||||+||+|.+.|++ +.|+++++||+|++ +.+....+|+++.+... T Consensus 316 ~~~~~--~~~P~~~~~~~~l~~dg~KMSKS~GN~i~~~d~i-------~~ygaD~lR~~l~~~~~~~~d~~f~~~~~~~~ 386 (564) T 3kfl_A 316 LMSAE--LPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKA-------KEFGIDALKYFLMRESNFQDDGDYSDKNMVAR 386 (564) T ss_dssp HHHTT--CCCCSCEEEECCEEETTEECCTTTTCCCCHHHHH-------HHHCHHHHHHHHHHHCCSSCCEECCHHHHHHH T ss_pred HHHHC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH-------HCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 77622--5899611000343120343200258878855654-------31898999999996298666642016899999 Q ss_pred H--HHHHHCCCCC-------CC-------CC---CCCH-----------HHHHHCCCHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 7--6432100001-------35-------10---0596-----------776302110127999999999999751306 Q gi|254780573|r 331 E--ILLSKWPQTS-------TS-------KG---IIDP-----------AVLSALYNDLNTVSAIQALHKLARESTKNH 379 (461) Q Consensus 331 ~--~~l~kl~~~~-------~~-------~~---~~~~-----------~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~ 379 (461) . ...+++.++. .. .. ..+. .+.++| |++++..|+.+|+++++..|+-. T Consensus 387 ~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~~~~~~~~v~~~~-e~~~f~~a~~~i~~~~~~~N~yi 464 (564) T 3kfl_A 387 LNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYV 464 (564) T ss_dssp HHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9888887788999999987652168888512211578877888998999999999-86799999999999999999999 No 7 >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Probab=100.00 E-value=8.5e-39 Score=296.08 Aligned_cols=333 Identities=15% Similarity=0.126 Sum_probs=229.3 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH---HHHHHHHHCCCCCCCCCCHHHH Q ss_conf 9847999616788884441112799999999999997079984579960552338---8899998708986448848999 Q gi|254780573|r 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPSIPINDAISII 99 (461) Q Consensus 23 ~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD---kii~~a~~~~~~~~~~~~~~~~ 99 (461) ..++-+.+-=|||-+.+||||+++||.+|+++||+|..|++ |.|| |+.|| ||+.+|+++|++ +.++ T Consensus 17 ~~~~~vt~~~P~~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~--v~~~---~G~D~~g~~i~~~a~~~g~~------p~e~ 85 (560) T 3h99_A 17 AKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHE--VNFI---CADDAHGTPIMLKAQQLGIT------PEQM 85 (560) T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCE--EEEE---EEEBCCSHHHHHHHHHHTSC------HHHH T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--EEEE---CEECCCHHHHHHHHHHCCCC------HHHH T ss_conf 78879976998888961132558799999999999946995--4550---70455739999999985999------9999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCC-----CCCCCCHHH Q ss_conf 999999999987762685410001235--6777789999987411432012892875220024543-----224675466 Q gi|254780573|r 100 TSKNTQQFVKDTTRLACLAPTHQPRAT--NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG-----SFSRRKIDE 172 (461) Q Consensus 100 a~~~~~~f~~d~~~L~v~~p~~~pr~t--~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG-----~Ls~~~~~~ 172 (461) +++|.+.|.+++++|||. ++.+.|.+ +|...+.+++.+|.++|+.|.....|+++...-.-|. ......... T Consensus 86 ~~~~~~~~~~~~~~l~i~-~d~~~~T~~~~~~~~v~~if~~L~~~G~iy~~~~~~~~~p~~~~~l~d~~v~g~~~~~~~~ 164 (560) T 3h99_A 86 IGEMSQEHQTDFAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSP 164 (560) T ss_dssp HHHHHHHHHHHHHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCS T ss_pred HHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCCCHHHEEEECCCCCCC T ss_conf 999999999999974982-7888617988999999999999997797202035788606777356225244135777761 Q ss_pred HHHHHHCCCCC--------------------C-CCCCCCEEEEECC-------------------------CCCCCEEEC Q ss_conf 66432102222--------------------1-0123512666337-------------------------766631414 Q gi|254780573|r 173 QKMGTRVPEKY--------------------H-KKNPADFILWKRS-------------------------TPMEPGWES 206 (461) Q Consensus 173 ~~~g~r~~~~~--------------------~-K~~p~DFaLWK~~-------------------------~~~e~~w~s 206 (461) ...|...+... . |..+.=|.-.... ..+..-|.. T Consensus 165 ~~~gd~~e~~g~~~~~~eli~~~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~i 244 (560) T 3h99_A 165 DQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDI 244 (560) T ss_dssp SEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEEC T ss_pred CCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 00688663258769857730775555557761046411122317899999997643742488999998766438887787 Q ss_pred CCCCCCCCCCCHH------------HHHHHHHC-------C-------------CCEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 6776676433204------------77778752-------9-------------84148741356666875136688886 Q gi|254780573|r 207 PWGRGRPGWHIEC------------SAMSSHYL-------G-------------KVFDIHGGGLDLIFPHHENEIAQSCC 254 (461) Q Consensus 207 pwG~GRPGWHiEC------------sam~~~~l-------g-------------~~~DIH~GG~DL~FPHHENEiAQs~a 254 (461) +|+..++||++.+ .++....+ | ..-.+|.+|.|.+|+|+....|+..+ T Consensus 245 sr~~~~~g~~~~~~~~~~~~vW~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Di~~fh~~~~~a~l~~ 324 (560) T 3h99_A 245 SRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEG 324 (560) T ss_dssp EEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 88767689878878986136503621113666531357666505576504566777415544773000399899999860 Q ss_pred HCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCCCCCCCCHHHHHHHHH Q ss_conf 408753012100343257642022332332140899850253345577799999998425--664321145034687776 Q gi|254780573|r 255 ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT--HYREPIDFTVQRLTEAEI 332 (461) Q Consensus 255 ~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss--hYRspLdfS~e~L~~A~~ 332 (461) . + .++.++++|+|+|+.+|+|||||+||+|.+.|+++ .|+++++||+||++ ++.++.+||++.+.+..+ T Consensus 325 ~-~-~~~~~~i~~~g~l~~~G~KMSKS~GN~i~p~~~i~-------~ygaD~lR~~ll~~~~~~~~d~~fs~~~~~~~~n 395 (560) T 3h99_A 325 S-N-FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-------HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560) T ss_dssp T-T-BCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHH-------HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH T ss_pred C-C-CCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHH-------HCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 5-5-68983675300450488860246886788999987-------4181899999998567777776668999999999 Q ss_pred H--HHHCCCCCCC--------------CCCCC-----------HHHHHHCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 4--3210000135--------------10059-----------67763021101279999999999997513 Q gi|254780573|r 333 L--LSKWPQTSTS--------------KGIID-----------PAVLSALYNDLNTVSAIQALHKLARESTK 377 (461) Q Consensus 333 ~--l~kl~~~~~~--------------~~~~~-----------~~f~~AL~DDLNTp~ALa~L~~lvk~~n~ 377 (461) . ++++.+.... ....+ +.+.++ .+++++..|+..++++++..|. T Consensus 396 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~e~~~~~~Al~~i~~~i~~~N~ 466 (560) T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEA-WESREFGKAVREIMALADLANR 466 (560) T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998515789998887776405885441012477899999999999999-9866999999999999999999 No 8 >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Probab=100.00 E-value=4.2e-37 Score=283.97 Aligned_cols=289 Identities=14% Similarity=0.093 Sum_probs=220.3 Q ss_pred CCEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--HHH----HHHHHH-CCCCCC-- Q ss_conf 984799961--678888444111279999999999999707998457996055233--888----999987-089864-- Q gi|254780573|r 23 PSNIRMYVC--GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID--DKI----IERARQ-EHPSIP-- 91 (461) Q Consensus 23 ~~~v~~Y~C--GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDid--Dki----i~~a~~-~~~~~~-- 91 (461) .++..+||| ||++.++.||||+|.+|++|.|.|||.+.|++ |+|+.+|+|.| +++ .+...+ -|.... T Consensus 16 ~~~~~~~v~~~g~SPTG~lHIG~~R~av~~daL~n~L~a~g~~--~~filrieDtD~~R~~~~~~~~~~~~~lg~~~~e~ 93 (523) T 1irx_A 16 RGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE--VRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEV 93 (523) T ss_dssp SCCCSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCE--EEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGS T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--EEEEEEEECCCCHHCCCHHHHHHHHHHCCCCHHHC T ss_conf 2898739994378899863024782628999999999976968--69999998985120130009999999769976655 Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCC Q ss_conf --488489999999999999877626854100012356777789999987411432012892875220024543224675 Q gi|254780573|r 92 --INDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 (461) Q Consensus 92 --~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~ 169 (461) ........++.+...+...+..++++.+...+....+.++.++.++...++...+......++++++...+....... T Consensus 94 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (523) T 1irx_A 94 PDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPA 173 (523) T ss_dssp CCTTSSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSE T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCC T ss_conf 89887754499999988899999838754444627887515899999999997402231144201023123233454455 Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH Q ss_conf 46666432102222101235126663377666314146776676433204777787529841487413566668751366 Q gi|254780573|r 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEI 249 (461) Q Consensus 170 ~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEi 249 (461) ...... ...+......+...+..|.........|..+||.|+|+||++|+++ +++..+|+|.+|+||+++||+++. T Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~v~~~~~g~dh~~~~~~~~~ 249 (523) T 1irx_A 174 MVYCPE-HRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYDT 249 (523) T ss_dssp EEECTT-TCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTSHHHH T ss_pred CCHHCC-CCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCHH---HCCCCCEEECCCEEECCCCHHHHH T ss_conf 521114-5755414776278537998668873204640698735553262021---127873687571210378406788 Q ss_pred HHHHH--HCCCCCCHHHEECCCEEEEE--ECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 88886--40875301210034325764--202233233214089985025334557779999999842566432114503 Q gi|254780573|r 250 AQSCC--ADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 (461) Q Consensus 250 AQs~a--~~~~~~~a~yWlH~G~l~i~--geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e 325 (461) +|..+ +.+ ....+|+|.++|+++ |+|||||.||++++++++ +.|.|+++||++++..|.++++|... T Consensus 250 ~~~~~~~~~~--~~~p~~~h~~~l~~~~~~~KmSKr~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523) T 1irx_A 250 GKEIIKEVYG--KEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLY-------EVLEPGLVRFIYARHRPNKEIKIDLG 320 (523) T ss_dssp HHHHHHHHHC--CCCCBCCEECCEEESCC---------CCCCHHHHH-------TTSCHHHHHHHHHSSCTTSCEEECCS T ss_pred HHHHHHHCCC--CCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHH-------HCCCHHHHHHHHHCCCCCCCCCCCCC T ss_conf 8999986068--88865789835761775545666666621499998-------70799998998737887656550210 Q ss_pred H Q ss_conf 4 Q gi|254780573|r 326 R 326 (461) Q Consensus 326 ~ 326 (461) . T Consensus 321 ~ 321 (523) T 1irx_A 321 L 321 (523) T ss_dssp T T ss_pred H T ss_conf 1 No 9 >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Probab=99.95 E-value=2.9e-26 Score=206.48 Aligned_cols=334 Identities=19% Similarity=0.140 Sum_probs=216.9 Q ss_pred EEEEE--CCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 99961--67888844411127-99999999999997079984579960552-3388899998708986448848999999 Q gi|254780573|r 27 RMYVC--GPTVYDFAHIGNAR-PMIVFDVLYRLLRYYYGEKCVTYVRNITD-IDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 27 ~~Y~C--GpTvy~~~HiG~~r-~~v~~D~l~R~L~~~~~~~~V~~v~niTD-idDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) +.|++ =|+|-+.+||||+. +++.+|++.||+|..|++ |.|+.+ || =--||..+|+++|++ +.+++++ T Consensus 3 k~~Ittp~Py~NG~lHiGH~~~~~l~aDi~~Ry~rm~G~~--v~~~~G-tDeHG~~i~~~a~~~g~~------p~e~~d~ 73 (722) T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED--VVFICG-TDEHGTPISFRALKEGRS------PREIVDE 73 (722) T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE-EBCCSHHHHHHHHHHTCC------HHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECE-ECCCHHHHHHHHHHCCCC------HHHHHHH T ss_conf 4999658989898856674333789999999999807995--586386-662079999999982999------9999999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC---C---------------C Q ss_conf 999999987762685410001235--6777789999987411432012892875220024---5---------------4 Q gi|254780573|r 103 NTQQFVKDTTRLACLAPTHQPRAT--NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---N---------------Y 162 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p~~~pr~t--~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~---~---------------Y 162 (461) |.+.|.+.++.|||.. |.+-|.| .|.....++..+|.++|+-|.....+++++..-. + | T Consensus 74 ~~~~~~~~~~~lgis~-D~f~rT~~~~~~~~v~~~f~~L~~~G~Iy~~~~~~~yc~~~~~~l~d~~v~g~cp~~~~~d~~ 152 (722) T 1rqg_A 74 FHEQIKITFQRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQK 152 (722) T ss_dssp HHHHHHHHHHHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCC T ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHEECCCCCCCCCCCC T ss_conf 9999999999839805-589757998999999999999997799831463545677635261562034524665654455 Q ss_pred CCC---CCC--CHHHHH------HHHHCCCCCCCC------CCCCE-------EEEECC---------CCCCCEE----E Q ss_conf 322---467--546666------432102222101------23512-------666337---------7666314----1 Q gi|254780573|r 163 GSF---SRR--KIDEQK------MGTRVPEKYHKK------NPADF-------ILWKRS---------TPMEPGW----E 205 (461) Q Consensus 163 G~L---s~~--~~~~~~------~g~r~~~~~~K~------~p~DF-------aLWK~~---------~~~e~~w----~ 205 (461) |.- .+. ..+++. .|..++....+. .-.|. .-|++. ..+-.-| + T Consensus 153 g~~c~~~~~~~~~~~~~~p~c~r~~~~ve~~~~~qwF~kl~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~l~Dw~ISRq 232 (722) T 1rqg_A 153 GDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRD 232 (722) T ss_dssp TTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEEC T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 54202457746720036885577797406985133443068888888652025799812323110443057633222344 Q ss_pred CCCCCCCCCCCCH-HH------------HHH-------------------HHHCCCCEEEEEECCCCCCCCCHHHHHHHH Q ss_conf 4677667643320-47------------777-------------------875298414874135666687513668888 Q gi|254780573|r 206 SPWGRGRPGWHIE-CS------------AMS-------------------SHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 (461) Q Consensus 206 spwG~GRPGWHiE-Cs------------am~-------------------~~~lg~~~DIH~GG~DL~FPHHENEiAQs~ 253 (461) -+||---|.|.-+ |. -++ ...-+.+.++|..|-|.+++|.---.|... T Consensus 233 ~~WGipiP~~~~~~~~~v~yvw~da~~~y~s~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~gkDi~~fh~~~~pa~l~ 312 (722) T 1rqg_A 233 LNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLM 312 (722) T ss_dssp CSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHH T ss_pred CCCCEEECCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCHHHHH T ss_conf 77753978335789985999843454210000134531149820566764213688423775257635442031369998 Q ss_pred HHCC--------CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCH Q ss_conf 6408--------7530121003432576420223323321408998502533455777999999984256-643211450 Q gi|254780573|r 254 CADR--------IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH-YREPIDFTV 324 (461) Q Consensus 254 a~~~--------~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLssh-YRspLdfS~ 324 (461) +... .-++-+..+++|+|+.+|+|||||+||+|.+.|++ ..|+++++||+|++.. ..+..+|++ T Consensus 313 ~~G~~~~~~~~~~~~~~~~v~~hg~l~~~G~KMSKS~GNvIdp~dli-------~~ygaD~lR~~l~~~~~~~~d~df~~ 385 (722) T 1rqg_A 313 AYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFL-------DVFPADYLRYYLTTIMPETRDSDFSF 385 (722) T ss_dssp TTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHT-------TTSCHHHHHHHHHHTCCSSSCEEECH T ss_pred HCCCCCCCCCCCCCCCCEEEEECCEEEECCCEEECCCCCCCCHHHHH-------HHCCHHHHHHHHHHHCCCCCCCCHHH T ss_conf 73743002223456785289864189616854110378737889987-------50582789999997088877753027 Q ss_pred HHHHHHHH--HHHHCCCCCC---------------CCCCC---CHHH----------HHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 34687776--4321000013---------------51005---9677----------63021101279999999999997 Q gi|254780573|r 325 QRLTEAEI--LLSKWPQTST---------------SKGII---DPAV----------LSALYNDLNTVSAIQALHKLARE 374 (461) Q Consensus 325 e~L~~A~~--~l~kl~~~~~---------------~~~~~---~~~f----------~~AL~DDLNTp~ALa~L~~lvk~ 374 (461) +.+....+ ..+++.++.. ..... +..+ .....+.++...|+.+++++++. T Consensus 386 ~~~~~~~n~~l~~~l~N~~~r~~~~~~k~~~~~~p~~~~~~~~d~~il~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~ 465 (722) T 1rqg_A 386 SDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASF 465 (722) T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999988887765547999999745521478778731000246999999999999999998635899999999999999 Q ss_pred HCC Q ss_conf 513 Q gi|254780573|r 375 STK 377 (461) Q Consensus 375 ~n~ 377 (461) .|. T Consensus 466 ~n~ 468 (722) T 1rqg_A 466 GNR 468 (722) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 10 >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Probab=99.94 E-value=1.2e-24 Score=195.04 Aligned_cols=341 Identities=19% Similarity=0.227 Sum_probs=210.5 Q ss_pred CCCEEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHH----CCCCCC-CC Q ss_conf 79847999616--7888844411127999999999999970799845799605523-3888999987----089864-48 Q gi|254780573|r 22 DPSNIRMYVCG--PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQ----EHPSIP-IN 93 (461) Q Consensus 22 ~~~~v~~Y~CG--pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~----~~~~~~-~~ 93 (461) +.++-..|+-- |.+-+.+||||+++++..|++.||.|..|++ |.|.++. |. -=.|...+++ +|.+.. ++ T Consensus 30 ~~~k~~f~i~~ppPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~--vl~~~G~-D~~Glpie~~~ek~~~~~~~~~~~~~ 106 (862) T 1gax_A 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFE--AVWLPGT-DHAGIATQVVVERLLLKEGKTRHDLG 106 (862) T ss_dssp TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSE--EEEECEE-BCCTHHHHHHHHTTTTTTTSCCSCCC T ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCC-CCCCHHHHHHHHHHHHHCCCCHHHCC T ss_conf 79999589972898988861231788899999999999807998--8999823-67777999999998876399937669 Q ss_pred C-----CHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH------- Q ss_conf 8-----48999999999999987762685410---00123567777899999874114320128928752200------- Q gi|254780573|r 94 D-----AISIITSKNTQQFVKDTTRLACLAPT---HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 (461) Q Consensus 94 ~-----~~~~~a~~~~~~f~~d~~~L~v~~p~---~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~------- 158 (461) + ..++.+.++...+.+++.+||+.-.= +..--.+|..-+.....+|.++|+.|....-|+++... T Consensus 107 ~~~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~Gliy~~~~~v~wcp~~~t~l~~~ 186 (862) T 1gax_A 107 REKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDL 186 (862) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECEEECCCCCHHHHH T ss_conf 99999999999999999999999983961516898176898999999999999998799787300040137877577640 Q ss_pred ---------------------------------------------CCCCCCCCCCCHHH----------------HHHHH Q ss_conf ---------------------------------------------24543224675466----------------66432 Q gi|254780573|r 159 ---------------------------------------------IPNYGSFSRRKIDE----------------QKMGT 177 (461) Q Consensus 159 ---------------------------------------------~~~YG~Ls~~~~~~----------------~~~g~ 177 (461) .+.|..|.|....- +..|+ T Consensus 187 ev~~~~~~~~~~~~~~~~~~~~~l~~~TtrPetl~g~~~~~v~p~~~~~~~l~g~~~~~~~~~~~~~~~~~~~v~~~~GT 266 (862) T 1gax_A 187 EVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGT 266 (862) T ss_dssp GEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSS T ss_pred CCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCEEECCCCCCEEEECCCCCCCCCCCC T ss_conf 34458887548999997459977999955865122043899997502898870587763567731121123244676786 Q ss_pred HCC-CCCCCCCCCCEEEEEC------------------------------------------------------------ Q ss_conf 102-2221012351266633------------------------------------------------------------ Q gi|254780573|r 178 RVP-EKYHKKNPADFILWKR------------------------------------------------------------ 196 (461) Q Consensus 178 r~~-~~~~K~~p~DFaLWK~------------------------------------------------------------ 196 (461) .+- ..+ -..|.||.++++ T Consensus 267 G~V~~~P-~h~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 345 (862) T 1gax_A 267 GALKVTP-AHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCS 345 (862) T ss_dssp SEEECCG-GGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEET T ss_pred CEEEECC-CCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 5178527-888779999986045630010233343323453320796087746999999996698645433000245324 Q ss_pred --C--------------------------CCCCC-------------------EE----ECCCCCCCCCCCCHH-HH--- Q ss_conf --7--------------------------76663-------------------14----146776676433204-77--- Q gi|254780573|r 197 --S--------------------------TPMEP-------------------GW----ESPWGRGRPGWHIEC-SA--- 221 (461) Q Consensus 197 --~--------------------------~~~e~-------------------~w----~spwG~GRPGWHiEC-sa--- 221 (461) . ..++. -| .-.||---|-||.+. .. T Consensus 346 r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~wG~piPi~~~~~~~~~~v 425 (862) T 1gax_A 346 RCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV 425 (862) T ss_dssp TTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEEC T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC T ss_conf 68981255303356765335666433455238637887676224055541576566567656798776698448885457 Q ss_pred ------------------------------------HHHHHCCC-----------CEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf ------------------------------------77875298-----------4148741356666875136688886 Q gi|254780573|r 222 ------------------------------------MSSHYLGK-----------VFDIHGGGLDLIFPHHENEIAQSCC 254 (461) Q Consensus 222 ------------------------------------m~~~~lg~-----------~~DIH~GG~DL~FPHHENEiAQs~a 254 (461) +-..++|. +.|+|.+|.|++|-|----++.+.. T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~dv~D~wfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Dii~~w~~~~~~~~~~ 505 (862) T 1gax_A 426 PRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYH 505 (862) T ss_dssp CCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHH T ss_pred CCHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH T ss_conf 84787641222124679612116754453212034406454288424498983089718986256777799999997576 Q ss_pred HCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHH Q ss_conf 40875301210034325764202233233214089985025334557779999999842566-43211450346877764 Q gi|254780573|r 255 ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY-REPIDFTVQRLTEAEIL 333 (461) Q Consensus 255 ~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshY-RspLdfS~e~L~~A~~~ 333 (461) ..+..||-+..+|+-.+..+|+|||||+||+|.+.|++ +.|+++++||+|+++.. -+.++|+++.++.+.+. T Consensus 506 ~~~~~p~k~v~~hG~vl~~~G~KMSKS~GNvi~p~~~i-------~kyGaDalR~~l~~~~~~~~D~~~~~~~~~~~~n~ 578 (862) T 1gax_A 506 FMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMV-------ERYGADALRFALIYLATGGQDIRLDLRWLEMARNF 578 (862) T ss_dssp HSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHH-------HHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHH T ss_pred HCCCCCCCEEEEECEEECCCCCCCCCCCCCCCCHHHHH-------HHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 44988866688714199889866778899979989999-------88197198888887506776422556999999999 Q ss_pred HHHCCCCCCC-----------CCC---CCHHH----------HHHCCCHHHHHHHHHHHHHHHH Q ss_conf 3210000135-----------100---59677----------6302110127999999999999 Q gi|254780573|r 334 LSKWPQTSTS-----------KGI---IDPAV----------LSALYNDLNTVSAIQALHKLAR 373 (461) Q Consensus 334 l~kl~~~~~~-----------~~~---~~~~f----------~~AL~DDLNTp~ALa~L~~lvk 373 (461) ++++.+.... ... .+..+ .....+.++...|+..+++++- T Consensus 579 ~~kl~n~~~~~~~~~~~~~~~~~~~~~~d~wils~l~~~~~~v~~~~~~~~~~~a~~~i~~f~~ 642 (862) T 1gax_A 579 ANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVW 642 (862) T ss_dssp HHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999996213466666775177899998889999999987774689999999999889 No 11 >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3} Probab=99.91 E-value=1.4e-22 Score=180.23 Aligned_cols=105 Identities=26% Similarity=0.282 Sum_probs=96.3 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 41487413566668751366888864087530121003432576420223323321408998502533455777999999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461) +.|++.+|.|+++.|.-.-+..+.+.++..++-+.-+|+|++..+|+|||||+||+|.+.+++ +.|+++++|| T Consensus 603 P~d~~~~G~D~~~~w~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~G~KMSKSkGNvvdP~~ii-------~~yGAD~lRl 675 (967) T 1wz2_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAI-------EENGADVVRL 675 (967) T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHH-------HTTCHHHHHH T ss_pred CCCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-------HHCCCCHHHH T ss_conf 664443463113453100002222235766531000123334556733366688865477898-------7419987789 Q ss_pred HHHC-CCCCCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9842-5664321145034687776432100001 Q gi|254780573|r 310 AMLM-THYREPIDFTVQRLTEAEILLSKWPQTS 341 (461) Q Consensus 310 ~lLs-shYRspLdfS~e~L~~A~~~l~kl~~~~ 341 (461) ++++ +.+.+.++|+++.+....+.++|+.+.. T Consensus 676 ~l~~~~~~~~d~~~~~~~i~~~~~~l~~~~~~~ 708 (967) T 1wz2_A 676 YIMSLAEHDSDFDWRRKEVGKLRKQIERFYELI 708 (967) T ss_dssp HHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 985369977514666578888899999999999 No 12 >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Probab=99.91 E-value=1.5e-21 Score=172.91 Aligned_cols=282 Identities=16% Similarity=0.114 Sum_probs=167.6 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCH-------HHHHHHHHCC----CC Q ss_conf 798479996167888844411127999999999999970799845799605-52338-------8899998708----98 Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNI-TDIDD-------KIIERARQEH----PS 89 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~ni-TDidD-------kii~~a~~~~----~~ 89 (461) .+.+|-+=.-.|.+-.+.||||+|+.+..|.|+|+|++.|++ |. ..|. -|.-- .+......+- .. T Consensus 28 ~~~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~--V~-r~nylgD~G~Q~g~l~~~~~~~~~~~~~~~~~~ 104 (464) T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYK--FN-TEYYVNDAGNQIYLLGLSILLSVKESILHENVE 104 (464) T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCE--EE-EEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCC T ss_pred CCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCE--EE-EEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 898799975599989875252004169999999999986992--78-999878859999999999999855553045521 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC-CCCCCCCC Q ss_conf 64488489999999999999877626854100012356777789999987411432012892875220024-54322467 Q gi|254780573|r 90 IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRR 168 (461) Q Consensus 90 ~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~-~YG~Ls~~ 168 (461) .+......+-.....++.++.........+.....+.-..+.+++.+++..++ -+|.||.-..+ .|-..... T Consensus 105 ~~~~~y~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------l~v~fD~~~~ES~~~~~~~~ 177 (464) T 3fnr_A 105 YPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQ-------AKIKIDSYVSERSYYDALNA 177 (464) T ss_dssp CCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHH-------TTCCCSCEEEGGGGSTTHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCEEEEEHHHHHHHHHHHH T ss_conf 04554246666689999999877753115569999999999999999987997-------08510000115788877999 Q ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEEECCCC-CC-CEEECCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEECCCCCCCC Q ss_conf 5466664321022221012351266633776-66-3141467766764332047777875298--414874135666687 Q gi|254780573|r 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTP-ME-PGWESPWGRGRPGWHIECSAMSSHYLGK--VFDIHGGGLDLIFPH 244 (461) Q Consensus 169 ~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~-~e-~~w~spwG~GRPGWHiECsam~~~~lg~--~~DIH~GG~DL~FPH 244 (461) -++++.....+.. .|.++|....+ ++ +..---.+.|.+.|...+-|+....++. ...|+..|.|..++| T Consensus 178 ~~~~l~~~~~~~e-------~~ga~~~~~~~~~d~~~~~l~ksdG~~~Y~t~Dia~~~~k~~~~~d~~I~v~g~dq~~~~ 250 (464) T 3fnr_A 178 TLESLKEHKGIYE-------QEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYI 250 (464) T ss_dssp HHHHHHHTTCEEE-------ETTEEEECGGGGTCSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGH T ss_pred HHHHHHHCCCEEE-------ECCCEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHH T ss_conf 9998864598685-------379877501103788785279607974101458999999872289728999866046677 Q ss_pred CHHHHHHHHHHCCCCCCHHHEECCCEEEEEE---CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 5136688886408753012100343257642---0223323321408998502533455777999999984256643211 Q gi|254780573|r 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEG---RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 (461) Q Consensus 245 HENEiAQs~a~~~~~~~a~yWlH~G~l~i~g---eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd 321 (461) +....++..+..+ .....+|+|.++..+.+ .|||++.||+++++|+++ .....++||++|+.++++++. T Consensus 251 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~dll~-------evg~~airy~~L~~~~~~~~~ 322 (464) T 3fnr_A 251 PRMKAAMEFLGFD-SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD-------EIGSDALRYIFLSKKCDTHLE 322 (464) T ss_dssp HHHHHHHHTTTCC-GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH-------HHCHHHHHHHTTSSCTTSCEE T ss_pred HHHHHHHHHCCCC-CCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHH-------HHHHHHHHHHHHCCCCCCCCC T ss_conf 6799999975677-55640589888899769802344147888355999999-------974778766653146555553 Q ss_pred CCHHHHH Q ss_conf 4503468 Q gi|254780573|r 322 FTVQRLT 328 (461) Q Consensus 322 fS~e~L~ 328 (461) |+++.+. T Consensus 323 Fd~~~~~ 329 (464) T 3fnr_A 323 FDISDLQ 329 (464) T ss_dssp EEGGGGG T ss_pred CCHHHHH T ss_conf 4668775 No 13 >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Probab=99.90 E-value=3.2e-22 Score=177.62 Aligned_cols=336 Identities=18% Similarity=0.196 Sum_probs=219.1 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC------CCCHHHHHH Q ss_conf 99616788884441112799999999999997079984579960552338889999870898644------884899999 Q gi|254780573|r 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPI------NDAISIITS 101 (461) Q Consensus 28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~------~~~~~~~a~ 101 (461) +...=|.+-+.+||||+++++.-|++.||.+..|+. |.|+++.=---=+|-..|.++|.+... ....++.+. T Consensus 52 ~~~~pPY~nG~LHiGHa~~~t~~DiiaRykrm~G~~--Vl~~~GwD~~GlPiE~~a~k~~~~~~~~~~~~~~~~~~~~~~ 129 (917) T 1ffy_A 52 LHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFY--APYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFAL 129 (917) T ss_dssp EECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCB--CCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHH T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHH T ss_conf 964898988860242668789999999998748998--899883140179999999985998001899999999999999 Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC------------------ Q ss_conf 9999999987762685410---0012356777789999987411432012892875220024------------------ Q gi|254780573|r 102 KNTQQFVKDTTRLACLAPT---HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP------------------ 160 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p~---~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~------------------ 160 (461) ++++.+.+++.+||+.-.= +..---+|...+...-.+|.++|++|....-|+++...-. T Consensus 130 ~~i~~~~~~~k~lG~~~DW~r~~~T~dp~y~~~~~~~F~~l~~~Gliyr~~~pv~wcp~~~T~La~~Ev~~~~~~~~~~~ 209 (917) T 1ffy_A 130 EQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIY 209 (917) T ss_dssp HHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEE T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCHHHHEECCCEECCCEE T ss_conf 99999999999836605289982648988999999999999986996962568755899998164675133757545500 Q ss_pred ----------------------------------------CCCCCC--CCC-------HHHHH----------------H Q ss_conf ----------------------------------------543224--675-------46666----------------4 Q gi|254780573|r 161 ----------------------------------------NYGSFS--RRK-------IDEQK----------------M 175 (461) Q Consensus 161 ----------------------------------------~YG~Ls--~~~-------~~~~~----------------~ 175 (461) .|+... +.. .+.+. . T Consensus 210 ~~~~~~~~~~~~~~~~~~~i~Tt~P~Tl~~~~~~~v~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (917) T 1ffy_A 210 VAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYT 289 (917) T ss_dssp CCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCC T ss_pred ECCEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHCCHHHEEECEEE T ss_conf 01000223234567740678506751235562365357740578860675110133346777765400101100000000 Q ss_pred HH-----H-----------------CCCCCC--------CCCCCCEEEEECCCC---------C---------------- Q ss_conf 32-----1-----------------022221--------012351266633776---------6---------------- Q gi|254780573|r 176 GT-----R-----------------VPEKYH--------KKNPADFILWKRSTP---------M---------------- 200 (461) Q Consensus 176 g~-----r-----------------~~~~~~--------K~~p~DFaLWK~~~~---------~---------------- 200 (461) |. . |..+.+ =..|.||..+|...- | T Consensus 290 g~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~ 369 (917) T 1ffy_A 290 GKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDK 369 (917) T ss_dssp TTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSH T ss_pred CCCCCCCEEECCCCCCCCEEEECCEECCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHH T ss_conf 22003623106778873228866813577884729978879878999999759974888615562113454325753144 Q ss_pred --------------------------------CC---------------------------------------------- Q ss_conf --------------------------------63---------------------------------------------- Q gi|254780573|r 201 --------------------------------EP---------------------------------------------- 202 (461) Q Consensus 201 --------------------------------e~---------------------------------------------- 202 (461) .| T Consensus 370 ~~~~~~~~l~~~g~l~~~~~~~~~~p~~~R~~~~vi~~~~~qwfi~~~~~~~~~~~~~~~~~~~p~~~~~r~~~~l~~~~ 449 (917) T 1ffy_A 370 ANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRG 449 (917) T ss_dssp HHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEEEECCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHH T ss_conf 55677776512786210322345677444467741786635652022200245677654114456524331557642345 Q ss_pred EE----ECCCCCCCCCCCCHHH---------------------------------------------------------- Q ss_conf 14----1467766764332047---------------------------------------------------------- Q gi|254780573|r 203 GW----ESPWGRGRPGWHIECS---------------------------------------------------------- 220 (461) Q Consensus 203 ~w----~spwG~GRPGWHiECs---------------------------------------------------------- 220 (461) -| .-.||---|=||-++. T Consensus 450 DW~iSRQR~WG~pIPv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~D~lD~wf 529 (917) T 1ffy_A 450 EWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWF 529 (917) T ss_dssp CEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHH T ss_pred HHCCCCCCCCCCCCCEEECCCCCEECCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHCC T ss_conf 52145455789844418817986312532078888766541765101110011054213467889875011374211002 Q ss_pred --HHH-HHH------CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHH Q ss_conf --777-875------29841487413566668751366888864087530121003432576420223323321408998 Q gi|254780573|r 221 --AMS-SHY------LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 (461) Q Consensus 221 --am~-~~~------lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dl 291 (461) ..+ ... +..+.|+..||.|+++-|--.-+..+.+..+..||-+.+.|+=.+.-+|+|||||+||+|.+.++ T Consensus 530 dSg~~~~~~~~~~~~~~~P~Dl~i~G~D~~r~wf~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~P~~i 609 (917) T 1ffy_A 530 DSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQV 609 (917) T ss_dssp HHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHH T ss_conf 57887654200320127877403336079750789998776641798851078741329999988776678897795675 Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC----CC---------------CCCH--- Q ss_conf 5025334557779999999842566432114503468777643210000135----10---------------0596--- Q gi|254780573|r 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----KG---------------IIDP--- 349 (461) Q Consensus 292 L~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~~A~~~l~kl~~~~~~----~~---------------~~~~--- 349 (461) + ++|+++++||+++++.+.+.++|+++.++.+...++|+.+...- .. .++. T Consensus 610 i-------~~yGaD~lRl~~~~~~~~~d~~~~~~~~~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~l~~lD~~il 682 (917) T 1ffy_A 610 V-------KQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLL 682 (917) T ss_dssp H-------HHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHH T ss_pred H-------HHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 3-------430816999999709854674117888999999999999999999850123474224554344338889999 Q ss_pred --------HHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf --------776302110127999999999999 Q gi|254780573|r 350 --------AVLSALYNDLNTVSAIQALHKLAR 373 (461) Q Consensus 350 --------~f~~AL~DDLNTp~ALa~L~~lvk 373 (461) .+.++ .++++...|+..+..++. T Consensus 683 ~~l~~~i~~v~~~-~e~~~f~~~~~~l~~F~~ 713 (917) T 1ffy_A 683 NRLREFTASTINN-YENFDYLNIYQEVQNFIN 713 (917) T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH T ss_conf 9999999999999-971228999999999999 No 14 >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Probab=99.89 E-value=8.3e-23 Score=181.79 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=97.1 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 41487413566668751366888864087530121003432576420223323321408998502533455777999999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461) +.|++.+|.|+++.|.-.-++++.+..+..++.+..+|+|++..+|+|||||+||+|.+.+++ +.|+++++|| T Consensus 603 p~d~~~~G~D~~~~~~~~~~~~~~~l~~~~~~~~~v~~~g~~~~~G~KMSKS~GNvidp~~ii-------~~yGaD~lRl 675 (810) T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAI-------EENGADVVRL 675 (810) T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHH-------HHHCHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCHHHHH-------HHHCHHHHHH T ss_conf 765431353003452110012101001234676411344430567614899888879979999-------8719099999 Q ss_pred HHHC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 9842-56643211450346877764321000013 Q gi|254780573|r 310 AMLM-THYREPIDFTVQRLTEAEILLSKWPQTST 342 (461) Q Consensus 310 ~lLs-shYRspLdfS~e~L~~A~~~l~kl~~~~~ 342 (461) ++++ +.+.+.++|+++.+....+.++|+.+... T Consensus 676 ~l~~~~~~~~d~~~~~~~i~~~~~~l~~~~~~~~ 709 (810) T 1wkb_A 676 YIMSLAEHDSDFDWRRKEVGKLRKQIERFYELIS 709 (810) T ss_dssp HHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9981498668877789999999999999999999 No 15 >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Probab=99.84 E-value=2.2e-19 Score=157.38 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=101.0 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH Q ss_conf 4148741356666875136688886408753012100343257-642022332332140899850253345577799999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461) +.|+-.||.|+++-|+---+..+.+.++..||-+...| |||. .+|+|||||+||+|++.|++ ++|+++++| T Consensus 544 PvD~~~~G~D~~r~w~~~~~~~~~~~~~~~pfk~l~~~-G~Vld~~G~KMSKSkGNvi~p~~ii-------~~yGaD~lR 615 (821) T 1ile_A 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDII-------RKFGADALR 615 (821) T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHH-------TTTCHHHHH T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-CEEECCCCCCCCCCCCCCCCHHHHH-------HHCCHHHHH T ss_conf 97089731077766899999855554289755043667-6599999987877899989989998-------654988999 Q ss_pred HHHH-CCCCCCCCCCCHHHHHHHH-HHHHHCCCCCCC--------------------CCCCC-----------HHHHHHC Q ss_conf 9984-2566432114503468777-643210000135--------------------10059-----------6776302 Q gi|254780573|r 309 LAML-MTHYREPIDFTVQRLTEAE-ILLSKWPQTSTS--------------------KGIID-----------PAVLSAL 355 (461) Q Consensus 309 ~~lL-sshYRspLdfS~e~L~~A~-~~l~kl~~~~~~--------------------~~~~~-----------~~f~~AL 355 (461) |+++ ++.-.+.++|+++.+..+. +.++++.+...- ...++ +.+.++| T Consensus 616 l~l~~~~~~~~d~~~~~~~v~~~~~~~~~kl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~ 695 (821) T 1ile_A 616 WYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL 695 (821) T ss_dssp HHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 97620578777754546788899999999888999999874023444323577701145989999999999999999999 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 11012799999999999 Q gi|254780573|r 356 YNDLNTVSAIQALHKLA 372 (461) Q Consensus 356 ~DDLNTp~ALa~L~~lv 372 (461) +.++...|+..+++++ T Consensus 696 -e~~~f~~a~~~l~~f~ 711 (821) T 1ile_A 696 -EAYDPTTSARALRDFV 711 (821) T ss_dssp -HTTCHHHHHHHHHHHH T ss_pred -HCCCHHHHHHHHHHHH T ss_conf -8379999999999999 No 16 >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Probab=99.80 E-value=1.2e-17 Score=144.91 Aligned_cols=127 Identities=17% Similarity=0.024 Sum_probs=100.5 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 79847999616788884441112799999999999997079984579960552338889999870898644884899999 Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITS 101 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~ 101 (461) ...+--++.--|++-+.+||||+++++.-|++.||.+..|+. |.|+++.=---=.|...+.+. +...++.+. T Consensus 31 ~~~kf~~~~~pPy~nG~lHiGHal~~tikDii~Rykrm~G~~--V~~~~GwD~~GlPiE~~v~k~------~~~~~~~~~ 102 (878) T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE--VLHPMGWDAFGLPAENAALKF------GVHPKDWTY 102 (878) T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCE--EECCCCBCCSSHHHHHHHHHT------TCCHHHHHH T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCHHHHHHHHHH------CCCHHHHHH T ss_conf 899838961899988860021568889999999998738997--899884366749999999994------985799999 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 9999999987762685410001235---677778999998741143201289287522 Q gi|254780573|r 102 KNTQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv 156 (461) ++.+.+.+.+.+||+.-.=..+..| ++...+.....+|.++|+.|....-|+++. T Consensus 103 ~~i~~~k~~~~~lG~~~DW~~~y~T~d~~y~~~v~~~F~~L~~kGliyrg~~pV~w~p 160 (878) T 2v0c_A 103 ANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCP 160 (878) T ss_dssp HHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET T ss_pred HHHHHHHHHHHHHCEEECCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCC T ss_conf 9999999999983974426898165898799999999999998799774775444578 No 17 >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Probab=99.73 E-value=1.8e-15 Score=129.35 Aligned_cols=300 Identities=16% Similarity=0.147 Sum_probs=156.2 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH---HHHHHHCCCCCCCCCCHH Q ss_conf 47984799961678888444111279999999999999707998457996055233888---999987089864488489 Q gi|254780573|r 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI---IERARQEHPSIPINDAIS 97 (461) Q Consensus 21 ~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDki---i~~a~~~~~~~~~~~~~~ 97 (461) ..+++|-+=.|.|.+-.+.||||+|+.+..|.|.|.|++.|++ |...--|-|.--.+ +..-+..+.+........ T Consensus 100 ~~~~~v~VEf~SpNp~k~lHvGHlRstiiGd~laril~~~G~~--V~r~nyigD~G~Qi~~~~~~~~~~~~~~~~~~~~~ 177 (592) T 1iq0_A 100 RRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGRE--VLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYD 177 (592) T ss_dssp CEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEE--EEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHH T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 7787799984589899986401278789889999999707998--76887528873353799999998564323322456 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC----CCCCCCCCCHHH Q ss_conf 999999999999877626854100-012356777789999987411432012892875220024----543224675466 Q gi|254780573|r 98 IITSKNTQQFVKDTTRLACLAPTH-QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRRKIDE 172 (461) Q Consensus 98 ~~a~~~~~~f~~d~~~L~v~~p~~-~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~----~YG~Ls~~~~~~ 172 (461) .....+...+.++.......+.-. .-.+-+. .+..+.+++.+....+.-..-+|.||.-.++ ..|.+. ..++. T Consensus 178 ~~~~~~y~~~~~~~~~~~~~~~~~e~~~~~e~-~~~~e~~~~~l~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~-~~~~~ 255 (592) T 1iq0_A 178 HFAGRAYVRLHQDPEYERLQPAIEEVLHALER-GELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQ-KALAL 255 (592) T ss_dssp HHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHT-TTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHH-HHHHH T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCEECCCCEECCCCCCCCHH-HHHHH T ss_conf 65020366652346777888779999999877-67999999999988878987454412032013322376338-88899 Q ss_pred HHH-HHHCCCCCCCCCCCCEEEEECCCCC-----CCEEECCCCCCCCCCCCHHHHHHHHHCCCC---------------E Q ss_conf 664-3210222210123512666337766-----631414677667643320477778752984---------------1 Q gi|254780573|r 173 QKM-GTRVPEKYHKKNPADFILWKRSTPM-----EPGWESPWGRGRPGWHIECSAMSSHYLGKV---------------F 231 (461) Q Consensus 173 ~~~-g~r~~~~~~K~~p~DFaLWK~~~~~-----e~~w~spwG~GRPGWHiECsam~~~~lg~~---------------~ 231 (461) +.. |..... +....+-++|-..++. ++..--...+|.|.+..-.-|....-++.. + T Consensus 256 l~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~vl~rsdG~~tY~~~DiA~~~~k~~~~~~~~~~~~~~~~~~~~ 332 (592) T 1iq0_A 256 LEQSPHVFRP---REGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGL 332 (592) T ss_dssp HTTSTTEECC---SSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTC T ss_pred HHHCCCEEEC---CCCCCCEEEEEECCCEECCCCCCEEEEECCCCCEEEECHHHHHHHHHHCCCCCCCEECCCCCCHHHH T ss_conf 9862302312---4556542799832302115777605898268955775203788888504421100002233423777 Q ss_pred E----------------EEEECCCCCCCCCHHHHHHHHHHCCCCCCHH--HEECCCEEEEEECCCCCCCCCCCCHHHHHC Q ss_conf 4----------------8741356666875136688886408753012--100343257642022332332140899850 Q gi|254780573|r 232 D----------------IHGGGLDLIFPHHENEIAQSCCADRIEKTAN--IWIHNGFLNLEGRKMSKSNGNFITINELLE 293 (461) Q Consensus 232 D----------------IH~GG~DL~FPHHENEiAQs~a~~~~~~~a~--yWlH~G~l~i~geKMSKSlGN~iti~dlL~ 293 (461) | |+.=|.+ --||...+.++....|..+++. ..+..|+|+.+|.|||+..||+++++|+|+ T Consensus 333 d~~~~~~~~~~~~~d~~I~vvd~~--Q~~h~~~v~~~l~~~g~~~~~~~~~hi~~g~v~~~g~kMStR~G~~i~l~dll~ 410 (592) T 1iq0_A 333 RTSAPEGEAYTPKAEETINVVDVR--QSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 410 (592) T ss_dssp EEEEEEEEECCCCCSEEEEEEESS--SCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHH T ss_pred HHHHHHCCCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCEEEECCCCCEEEHHHHHH T ss_conf 776542020012200345444024--203899999999985787133110246678997276344314775468999999 Q ss_pred CCCCC------------------CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 25334------------------5577799999998425664321145034687 Q gi|254780573|r 294 TKKFG------------------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 (461) Q Consensus 294 ~~~~~------------------~k~y~p~viR~~lLsshYRspLdfS~e~L~~ 329 (461) +.... .+...-.++||++|+....++++|+++.+.+ T Consensus 411 e~~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~l~ 464 (592) T 1iq0_A 411 EATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALS 464 (592) T ss_dssp HHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHC T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHH T ss_conf 999999998764023203456799885320368763215765566769999965 No 18 >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* Probab=99.58 E-value=1.7e-13 Score=115.21 Aligned_cols=240 Identities=20% Similarity=0.194 Sum_probs=145.9 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) .-|++-++.||||+|+++.--++.|- .|+ +++..|.|+|-+ |++. .|++..++| T Consensus 10 fAPsPtG~lHlG~artal~n~l~Ar~---~~G----~~iLRieDtD~~---R~~~----------------~~~~~I~~d 63 (298) T 1nzj_A 10 FAPSPSGELHFGSLIAALGSYLQARA---RQG----RWLVRIEDIDPP---REVP----------------GAAETILRQ 63 (298) T ss_dssp ECCCTTSCCCHHHHHHHHHHHHHHHH---TTC----EEEEEECCSCGG---GSCT----------------THHHHHHHH T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHH---CCC----EEEEEECCCCCC---CCCH----------------HHHHHHHHH T ss_conf 79598985208999999999999998---099----899986879977---5876----------------899999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-EEECCHHCCC-C-CCCCCCCHHHHHHHHHC--C----- Q ss_conf 77626854100012356777789999987411432012892-8752200245-4-32246754666643210--2----- Q gi|254780573|r 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPN-Y-GSFSRRKIDEQKMGTRV--P----- 180 (461) Q Consensus 111 ~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~-VyFdv~~~~~-Y-G~Ls~~~~~~~~~g~r~--~----- 180 (461) +..|++..+....+.|++++.+.+++++|+++|+||.-.-+ -. +.+... | |.-.......-....|. . T Consensus 64 L~wLgl~~d~~~~~QS~r~~~y~~~~~~L~~~G~aY~C~csr~~--l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 141 (298) T 1nzj_A 64 LEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRAR--IQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQ 141 (298) T ss_dssp HHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHH--HHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCE T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHH--HHHHCCCCCCCCCCCCCCCCCHHHEEECCCCCEE T ss_conf 87446667764332676899999999999977982250255888--8763023333332233455322210205786216 Q ss_pred ---------CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH Q ss_conf ---------22210123512666337766631414677667643320477778752984148741356666875136688 Q gi|254780573|r 181 ---------EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 (461) Q Consensus 181 ---------~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQ 251 (461) ....+..+.||+++ +..|.|.+|+ |+++-....|-+.-|. |.| |.+|.-.| T Consensus 142 ~~~~~~~~~~~~~~~~~~d~vi~-------------r~Dg~ptY~l-A~vVDD~~~gIThViR--G~D----l~~st~~Q 201 (298) T 1nzj_A 142 FTDQLRGIIHADEKLAREDFIIH-------------RRDGLFAYNL-AVVVDDHFQGVTEIVR--GAD----LIEPTVRQ 201 (298) T ss_dssp EEETTTEEEECCHHHHHSCCEEE-------------CTTSCBCHHH-HHHHHHHHTTCCEEEE--EGG----GHHHHHHH T ss_pred EEECCCCCEEECCCCCCCCEEEE-------------CCCCCCCEEE-CHHCCCCCCCCCEEEE--CCC----CCCCCHHH T ss_conf 74422163663133344641246-------------5778631122-2011543269978964--886----66576889 Q ss_pred ---HHHHCCCCCCHHHEECCC-EEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH---CCCCCCCCCCCH Q ss_conf ---886408753012100343-2576420223323321408998502533455777999999984---256643211450 Q gi|254780573|r 252 ---SCCADRIEKTANIWIHNG-FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML---MTHYREPIDFTV 324 (461) Q Consensus 252 ---s~a~~~~~~~a~yWlH~G-~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lL---sshYRspLdfS~ 324 (461) .+++.-..| + |.|.. .++.+|+||||+.|-. .++ +++.+.++--+|- .+..-..-+||. T Consensus 202 ~~L~~aLg~~~P--~-y~H~pli~~~~G~KLSKr~~a~-----~i~------~~~~~~~~~~~L~~lG~~~~~~~~~~s~ 267 (298) T 1nzj_A 202 ISLYQLFGWKVP--D-YIHLPLALNPQGAKLSKQNHAP-----ALP------KGDPRPVLIAALQFLGQQAEAHWQDFSV 267 (298) T ss_dssp HHHHHHHTCCCC--E-EEEECBCCC------------------CCC------SSCCHHHHHHHHHHTTCCCCSCGGGSCH T ss_pred HHHHHHHCCCCC--C-EEEEEEEECCCCCCCCCCCCHH-----HHH------CCCCCHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 999997389998--5-4986725778998567768711-----333------5893199999999808998622344899 Q ss_pred -HHHHHHHH Q ss_conf -34687776 Q gi|254780573|r 325 -QRLTEAEI 332 (461) Q Consensus 325 -e~L~~A~~ 332 (461) +.|+++.. T Consensus 268 ~e~l~~~i~ 276 (298) T 1nzj_A 268 EQILQSAVK 276 (298) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999985 No 19 >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima} Probab=99.50 E-value=1.4e-11 Score=101.56 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=146.9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) -|++-++.||||+||+++-.++.|- .|+ +++.-|-|.|- .|. ...|++..+++| T Consensus 19 APsPtG~lHiG~~rtal~n~~~Ak~---~~G----~~iLRieDTD~---~R~----------------~~~~~~~I~~~L 72 (481) T 2o5r_A 19 APSPTGFLHVGGARTALFNFLFARK---EKG----KFILRIEDTDL---ERS----------------EREYEEKLMESL 72 (481) T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHHH---HTC----EEEECBCCSSC---CSG----------------GGHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---CCC----EEEEEECCCCC---CCC----------------CHHHHHHHHHHH T ss_conf 8798974208999999999999998---499----89998687898---758----------------879999999999 Q ss_pred HHHCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------CEEECC---HHCCCCCCC--CCCCHH- Q ss_conf 762685410--------001235677778999998741143201289------287522---002454322--467546- Q gi|254780573|r 112 TRLACLAPT--------HQPRATNHIPQMIYLIQNIILHGHAYEANN------EIIFDT---SSIPNYGSF--SRRKID- 171 (461) Q Consensus 112 ~~L~v~~p~--------~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g------~VyFdv---~~~~~YG~L--s~~~~~- 171 (461) ..|++.... -.-+.|++++..-+++++|+++|+||.--- ..--.. .+-+.|..- -..+.. T Consensus 73 ~wlGl~~De~p~~~~~~~~~~QS~r~~~y~~~~~~Li~~G~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~~~~~~~~~~ 152 (481) T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPE 152 (481) T ss_dssp HHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHH T ss_pred HHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHH T ss_conf 97699877687778898874098689999999999987699661233177775666554203568776603442244423 Q ss_pred HHH-HHH-HCCCCCCCCCCCCEEEEECCCCCCCEEECC-C-------CCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 666-432-102222101235126663377666314146-7-------766764332047777875298414874135666 Q gi|254780573|r 172 EQK-MGT-RVPEKYHKKNPADFILWKRSTPMEPGWESP-W-------GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 (461) Q Consensus 172 ~~~-~g~-r~~~~~~K~~p~DFaLWK~~~~~e~~w~sp-w-------G~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~ 241 (461) ... ... .....-..+.|..-.-|.-.-.|++.++.+ . ..|-|-.|+- ++.-....| +.-..-|.| T Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~Dg~PtY~fa-~vvDD~~~~--ithvirg~d-- 227 (481) T 2o5r_A 153 RRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFA-CVVDDMLME--ITHVIRGDD-- 227 (481) T ss_dssp HHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHH-HHHHHHHTT--CSEEEEEGG-- T ss_pred HHHHHHHCCCCCEEEECCCCCCCEEECCCCCEEECCCCCCCCEEEEECCCCCCEEEE-EEECCCCCC--CCEEECCCC-- T ss_conf 321223316660366316766731110214424226656799789914787102220-030675568--564315630-- Q ss_pred CCCCHHHHHH---HHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC Q ss_conf 6875136688---8864087530121003432576420223323321408998502533455777999999984256643 Q gi|254780573|r 242 FPHHENEIAQ---SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 (461) Q Consensus 242 FPHHENEiAQ---s~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRs 318 (461) |..|--.| .+|+.- +...||-|.-.++.+|+||||-.|. ++|+++.+ +||-|++++-||..--|+. T Consensus 228 --~~~~t~~~~~~~~~l~~--~~p~~~h~~~i~~~dg~KLSKR~g~-~si~~~r~------~G~~p~Al~NyL~~LGws~ 296 (481) T 2o5r_A 228 --HLSNTLRQLALYEAFEK--APPVFAHVSTILGPDGKKLSKRHGA-TSVEAFRD------MGYLPEALVNYLALLGWSH 296 (481) T ss_dssp --GHHHHHHHHHHHHHTTC--CCCEEEEECCEECTTSSBCCGGGSC-CBHHHHHH------HTCCHHHHHHHHHTSSBCC T ss_pred --HHHHHHHHHHHHHHHCC--CCCEEEECHHHCCCCCCCCCCCCCC-CCHHHHHH------CCCCHHHHHHHHHHHCCCC T ss_conf --45635999999998475--9983895054408998975664797-58999998------7998899999999947999 Q ss_pred CCC Q ss_conf 211 Q gi|254780573|r 319 PID 321 (461) Q Consensus 319 pLd 321 (461) +-+ T Consensus 297 ~~~ 299 (481) T 2o5r_A 297 PEG 299 (481) T ss_dssp TTC T ss_pred CCC T ss_conf 976 No 20 >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Probab=99.49 E-value=4.3e-11 Score=98.11 Aligned_cols=259 Identities=15% Similarity=0.136 Sum_probs=164.3 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH---------------------- Q ss_conf 7984799961678888444111279999999999999707998457996055233888---------------------- Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI---------------------- 79 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDki---------------------- 79 (461) .+.+|-+=.+.|.+-.+.|+||+|+.+.-|.|.|.|++.||+ |.-.--|-|.--.| T Consensus 141 ~~kkViVEf~SaNptkplHvGHlR~aiiGd~Lanll~~~G~~--V~re~YinD~G~Qi~~l~~s~~~~~~~~~~~~~~~~ 218 (607) T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWE--VIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 218 (607) T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCE--EEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHH T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCH T ss_conf 998799985179899886331356279999999999987991--888542475541889999999984454555555412 Q ss_pred ---------HHHHHHCCCCCC----------------------CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf ---------999987089864----------------------4884899999999999998776268541000123567 Q gi|254780573|r 80 ---------IERARQEHPSIP----------------------INDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 (461) Q Consensus 80 ---------i~~a~~~~~~~~----------------------~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~ 128 (461) -+...+.+-... .-.-|..+.......|.+.+..|||.....+.-.+-+ T Consensus 219 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~s~~~~~~~~~~l~V~fD~~~~Es~~~ 298 (607) T 1f7u_A 219 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVS 298 (607) T ss_dssp HHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCC T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCC T ss_conf 47889998777530121010033456899999999775157999999876666679999999862570212222122110 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCC Q ss_conf 77789999987411432012892875220024543224675466664321022221012351266633776663141467 Q gi|254780573|r 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 (461) Q Consensus 129 i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spw 208 (461) -+.+...++.|.++|++|+.+|.++|+.+++.+ . .-+.+|-| +.|.+.+-++ T Consensus 299 ~~~~~~~~~~l~~~g~~~e~~ga~~~~~~~~~~--~-----------------------~~~~vl~k--sDGt~tY~t~- 350 (607) T 1f7u_A 299 KESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNK--K-----------------------LGKAIVQK--SDGTTLYLTR- 350 (607) T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCT--T-----------------------TCEEEEEC--TTSCCCHHHH- T ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHC--C-----------------------CCCEEEEE--CCCCEEECHH- T ss_conf 000688999998659822003440001154413--5-----------------------66425881--6996100200- Q ss_pred CCCCCCCCCHHHHHH---HHH--CC--CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCC Q ss_conf 766764332047777---875--29--84148741356666875136688886408753012100343257642022332 Q gi|254780573|r 209 GRGRPGWHIECSAMS---SHY--LG--KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 (461) Q Consensus 209 G~GRPGWHiECsam~---~~~--lg--~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKS 281 (461) -++ .++ .+ .-|+|-|...++-|+.. .+-.++ .| .+++.--.|..+-.+ .|||+- T Consensus 351 ------------DIAyh~~K~~r~~fD~~I~V~gadq~~h~~~l---~~~l~~-lg-~~~~~~~~hv~~g~~--~~mstR 411 (607) T 1f7u_A 351 ------------DVGAAMDRYEKYHFDKMIYVIASQQDLHAAQF---FEILKQ-MG-FEWAKDLQHVNFGMV--QGMSTR 411 (607) T ss_dssp ------------HHHHHHHHHHHHCCSEEEEECCGGGHHHHHHH---HHHHHH-TT-CGGGGGEEEECCCCE--ESCCGG T ss_pred ------------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH---HHHHHH-CC-CCHHHCCCEEEECCC--CCCCCC T ss_conf ------------88999998871077756651460365799999---999998-28-972103413431122--245530 Q ss_pred CCCCCCHHHHHCCCCCC---------------------CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 33214089985025334---------------------5577799999998425664321145034687 Q gi|254780573|r 282 NGNFITINELLETKKFG---------------------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 (461) Q Consensus 282 lGN~iti~dlL~~~~~~---------------------~k~y~p~viR~~lLsshYRspLdfS~e~L~~ 329 (461) .|+++++.|+++..+.. .....-.++||++|+..-.++++|.++.+.+ T Consensus 412 ~G~~v~L~dll~e~~~~~~~~~~~~~~~~~~~~~~~~~a~~vg~~avr~~~l~~~~~~~~~Fd~d~~~~ 480 (607) T 1f7u_A 412 KGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS 480 (607) T ss_dssp GTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH T ss_conf 002433899999999999999985023310357888999997255889999860445554457999864 No 21 >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus} Probab=99.47 E-value=1e-11 Score=102.51 Aligned_cols=253 Identities=19% Similarity=0.172 Sum_probs=152.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) -|++-++.||||+||+++-=++.| ..|+ .++.=|-|.|- .|+ ...|++..++++ T Consensus 7 aPsPtG~lHiG~~rtal~n~~~a~---~~~G----~~iLRieDtD~---~R~----------------~~~~~~~I~~~L 60 (492) T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR---HRGG----KFILRIEDTDR---ERS----------------RPEYTENILEGL 60 (492) T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH---HTTC----EEEEEECCCSS---SSC----------------CHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCC---CCC----------------CHHHHHHHHHHH T ss_conf 889898541899999999999999---8099----89999687997---747----------------879999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CEE------ECCHHCCCC-CCCCCCCHHHHHH----HH Q ss_conf 762685410001235677778999998741143201289---287------522002454-3224675466664----32 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN---EII------FDTSSIPNY-GSFSRRKIDEQKM----GT 177 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g---~Vy------Fdv~~~~~Y-G~Ls~~~~~~~~~----g~ 177 (461) +.|++....-.-+.|++.+--.+++++|+++|.||.-.- .+= -.-.+.+.| |.-.+...+++.. |. T Consensus 61 ~wlGl~~d~~~~~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~~~~~~~~e~~~~~~~g~ 140 (492) T 2cfo_A 61 QWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGR 140 (492) T ss_dssp HHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTC T ss_pred HHCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 97899999977617217999999999999869957727999999999987633799998746664100666765665599 Q ss_pred ----HCCCCCC-CCCCCCEEEEECCCC-----CCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH Q ss_conf ----1022221-012351266633776-----663141467766764332047777875298414874135666687513 Q gi|254780573|r 178 ----RVPEKYH-KKNPADFILWKRSTP-----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 (461) Q Consensus 178 ----r~~~~~~-K~~p~DFaLWK~~~~-----~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN 247 (461) |...... .-.-.|.+..+-..+ +.+.--.+...++.||.+-+-|.+-.-.-..+.....|.|++...+-. T Consensus 141 ~~~~R~k~~~~~~~~~~D~v~g~~~~~~~~~~~d~ii~~~~~~~~dg~ptY~~a~~vDD~~~~ithviRg~d~~~~t~~~ 220 (492) T 2cfo_A 141 TPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQ 220 (492) T ss_dssp CCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHH T ss_pred CEEEEEECCCCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCHH T ss_conf 80699973788853565330005764100257973464045767777532775444067556767787352012553499 Q ss_pred HHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 6688886408753012100343257642022332332140899850253345577799999998425664321 Q gi|254780573|r 248 EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 (461) Q Consensus 248 EiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspL 320 (461) ...+ ++..- ++ -.|+-|.-.++.+|+||||.-| ..+|.++.+ +||.|+++.-||..--|+.|- T Consensus 221 ~~~~-~~l~~-~~-p~~~h~pll~~~~g~klSKr~~-~~~v~~~r~------~G~~peAl~NyLa~LGws~~~ 283 (492) T 2cfo_A 221 ILLY-EALGA-TP-PNFAHTPLILNSTGQKLSKRDG-VTSISDFRA------MGYLAPALANYMTLLGWSPPE 283 (492) T ss_dssp HHHH-HHTTC-CC-CEEEEECCEECSSSSBCCTTSS-CCBHHHHHH------TTCCHHHHHHHHHHTTBCCCT T ss_pred HHHH-HHHCC-CC-CCEEEHHHHCCCCCCCCCCCCC-CCCHHHHHH------CCCCCHHHHHHHHHHCCCCCC T ss_conf 9998-75257-99-8365374631667873232389-754777876------799808999999994899988 No 22 >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Probab=99.46 E-value=6.1e-12 Score=104.14 Aligned_cols=274 Identities=18% Similarity=0.184 Sum_probs=170.2 Q ss_pred EEEEE--CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 22330--4798479996167888844411127999999999999970799845799605523388899998708986448 Q gi|254780573|r 16 TEFQA--IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPIN 93 (461) Q Consensus 16 ~~f~p--~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~ 93 (461) +.+.| ..+|+|.+--+ |++-++.||||+|++++-.++.|- .|+ .++.=|-|.|- .|... T Consensus 85 ~~l~~l~~~~g~VvtRFA-PsPtG~LHiG~artal~n~~~Ak~---~~G----~fiLRieDTD~---~R~~~-------- 145 (553) T 3aii_A 85 KGLRELAGVKGEVVLRFA-PNPSGPLHIGHARAAILNHEYARK---YDG----RLILRIEDTDP---RRVDP-------- 145 (553) T ss_dssp --CCCCSSCCSCCEEEEC-CCSSSSCBHHHHHHHHHHHHHHHH---TTC----EEEEEECCCCG---GGCCT-------- T ss_pred CCCCCCCCCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCCCH-------- T ss_conf 269988888981899979-599986448999999999999997---199----89998057766---61778-------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCC---CC-- Q ss_conf 8489999999999999877626854100012356777789999987411432012892875220024543224---67-- Q gi|254780573|r 94 DAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS---RR-- 168 (461) Q Consensus 94 ~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls---~~-- 168 (461) .|++..++|++.||+.. +...+.|++++...+++++|+++|.||.-.-+-- +.++...-++-+ .+ T Consensus 146 --------e~~~~I~edL~WLGl~w-De~~~QS~r~~~Y~~~a~~Li~~G~AY~C~Cs~e-el~~~r~~~~~~~~r~~~~ 215 (553) T 3aii_A 146 --------EAYDMIPADLEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYVCTCRPE-EFRELKNRGEACHCRSLGF 215 (553) T ss_dssp --------THHHHHHHHHHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHH-HHHHHHHTTCCCGGGGCCH T ss_pred --------HHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHH-HHHHHHHCCCCCCCCCCCC T ss_conf --------99999999999808998-9873231009999999999998799544069999-9999874456567777640 Q ss_pred --CH---HHHH---HHH---HCCC--CCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf --54---6666---432---1022--221012351266633776663141467766764332047777875298414874 Q gi|254780573|r 169 --KI---DEQK---MGT---RVPE--KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 (461) Q Consensus 169 --~~---~~~~---~g~---r~~~--~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~ 235 (461) ++ +++. .|. |+.. ......-+|++.+.-.....+. ..-...|.|..|. |+++.....|-+--| T Consensus 216 ~~~l~~~~~~~~~~~g~~vlR~k~~~~~~~~~~rd~v~~ri~~~~~d~-v~~r~d~~PtY~f-A~vVDD~~~gITHVI-- 291 (553) T 3aii_A 216 RENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR-TGTRYRVYPMMNF-SVAVDDHLLGVTHVL-- 291 (553) T ss_dssp HHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT-TBTSCCEEECHHH-HHHHHHHHTTCCEEE-- T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCEEEEEECCCCCC-CCCCCCCCEEEEE-EEEECCCCCCCCEEE-- T ss_conf 001578888653447874999956655787614324344540124764-0333046435655-126435554246698-- Q ss_pred ECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCC---------------CCHHHHHCCCCCCCC Q ss_conf 13566668751366888864087530121003432576420223323321---------------408998502533455 Q gi|254780573|r 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF---------------ITINELLETKKFGGR 300 (461) Q Consensus 236 GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~---------------iti~dlL~~~~~~~k 300 (461) -|.||. ++-.--+...+++.-..| .+.|.++|++++.|||||.+.. -|++.+- .+ T Consensus 292 RG~D~l-~sT~~Q~~L~~aLg~~~P---~~~H~~~L~~~~~~lSkr~~~~~v~~g~~~gwddprl~tl~~lr------rr 361 (553) T 3aii_A 292 RGKDHL-ANREKQEYLYRHLGWEPP---EFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIA------RR 361 (553) T ss_dssp C------CHHHHHHHHHHHHTCCCC---EEECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHH------HT T ss_pred ECCHHH-CCCHHHHHHHHHCCCCCC---CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH------HC T ss_conf 553210-275899999997599987---51122133377754452332113515775555564422046787------77 Q ss_pred CCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHH Q ss_conf 77799999998425664-321145034687776 Q gi|254780573|r 301 SWPAPVIRLAMLMTHYR-EPIDFTVQRLTEAEI 332 (461) Q Consensus 301 ~y~p~viR~~lLsshYR-spLdfS~e~L~~A~~ 332 (461) +|.|++++-||..-.+. ++-.|+++.|...-+ T Consensus 362 G~~peAi~nf~~~lG~s~~d~~~~~~~L~~~nr 394 (553) T 3aii_A 362 GIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNR 394 (553) T ss_dssp TCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 999999999999729677631135878999889 No 23 >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} Probab=99.46 E-value=8.4e-12 Score=103.15 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=153.0 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) +-|++-++.||||+||+++--++.| ..|+ +++.-|-|.|-+ |. ...|++..++| T Consensus 11 fAPsPtG~lHiG~~rtal~n~~~Ak---~~~g----~fiLRieDtD~~---R~----------------~~~~~~~I~~~ 64 (498) T 2ja2_A 11 FCPSPTGTPHVGLVRTALFNWAYAR---HTGG----TFVFRIEDTDAQ---RD----------------SEESYLALLDA 64 (498) T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHH---HHTC----EEEECBCCCCTT---TC----------------CHHHHHHHHHH T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCCC---CC----------------CHHHHHHHHHH T ss_conf 1879897312899999999999999---8299----899987889987---48----------------88999999999 Q ss_pred HHHHCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---EEE-CC----HHCCCCC-CCCCCCHHHH Q ss_conf 7762685410--------0012356777789999987411432012892---875-22----0024543-2246754666 Q gi|254780573|r 111 TTRLACLAPT--------HQPRATNHIPQMIYLIQNIILHGHAYEANNE---IIF-DT----SSIPNYG-SFSRRKIDEQ 173 (461) Q Consensus 111 ~~~L~v~~p~--------~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~---VyF-dv----~~~~~YG-~Ls~~~~~~~ 173 (461) +.-||+.... ---+-|++++--.+++++|+++|.||.---+ +-- .. .+-+.|. .-.+...++. T Consensus 65 l~wlgl~~De~~~~~g~~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~e~l~~~~~~~~~~~~~~y~~~~~~~~~~~~ 144 (498) T 2ja2_A 65 LRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQR 144 (498) T ss_dssp HHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHH T ss_pred HHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHH T ss_conf 99869987768676888877309759999999999998779973436877888875421046887777401013444667 Q ss_pred ----HHHHHCCCCCCCCCCCCEEEEECCCCCCCEEE--------CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf ----64321022221012351266633776663141--------467766764332047777875298414874135666 Q gi|254780573|r 174 ----KMGTRVPEKYHKKNPADFILWKRSTPMEPGWE--------SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 (461) Q Consensus 174 ----~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~--------spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~ 241 (461) ..|.. ..-.-+.|.+-.-|+-.-.|++.++ -.+..|.|.||..|++ -....|-+--| -|.|++ T Consensus 145 ~~~~~~g~~--~viR~k~~~~~~~~~D~v~g~~~~~~~~~~D~vi~r~dg~PtY~~a~vv-DD~~~~ithvi--Rg~d~~ 219 (498) T 2ja2_A 145 AAYLAEGRQ--PVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPC-DDALMKITHVL--RGEDLL 219 (498) T ss_dssp HHHHHTTCC--CEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHH-HHHHTTCCEEE--EEGGGG T ss_pred HHHHHCCCC--EEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCEEECEEC-CCCCCCCCEEC--CCCCCC T ss_conf 877646998--0699845998851134304207970466898444020585331415451-34467875550--787657 Q ss_pred ---CCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC Q ss_conf ---68751366888864087530121003432576420223323321408998502533455777999999984256643 Q gi|254780573|r 242 ---FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 (461) Q Consensus 242 ---FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRs 318 (461) +.|..=-.|......+ .+.-.|+-|.-+++.+|.||||.-|. .++.++.+ +||-|+++.-||+.--+.. T Consensus 220 ~~t~~q~~l~~~l~~~~~~-~~~p~~~h~~l~~~~~g~klskr~~~-~~~~~~r~------~GylPeAl~NyLa~LGws~ 291 (498) T 2ja2_A 220 PSTPRQLALHQALIRIGVA-ERIPKFAHLPTVLGEGTKKLSKRDPQ-SNLFAHRD------RGFIPEGLLNYLALLGWSI 291 (498) T ss_dssp GGHHHHHHHHHHHHHTTSC-CCCCEEEEECCEECSSSSBCCTTSGG-GBHHHHHH------HTCCHHHHHHHHHTSSCCS T ss_pred CCCHHHHHHHHHHHHHCCC-CCCCEEEECHHHHCCCCCCCCCCCCC-HHHHHHHH------CCCCHHHHHHHHHHHCCCC T ss_conf 7416899999999851668-88844875323305456625456985-13999998------6998899999999967988 Q ss_pred C Q ss_conf 2 Q gi|254780573|r 319 P 319 (461) Q Consensus 319 p 319 (461) + T Consensus 292 ~ 292 (498) T 2ja2_A 292 A 292 (498) T ss_dssp C T ss_pred C T ss_conf 8 No 24 >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Probab=99.36 E-value=7.8e-10 Score=89.10 Aligned_cols=286 Identities=15% Similarity=0.152 Sum_probs=148.3 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH----------------------- Q ss_conf 798479996167888844411127999999999999970799845799605523388----------------------- Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDK----------------------- 78 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDk----------------------- 78 (461) .+.+|-+=.|.|.+-.+.|+||+|+.+.-|.|.|.|++.|++ |+-.-=|-|.--- T Consensus 117 ~~kkV~VEf~SpNptkplHVGHlRsaiiGd~larlle~~G~~--V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~e~~ 194 (629) T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYE--VEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELR 194 (629) T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 997799985289899986500047478889999999976996--879885588755678989989987777641010101 Q ss_pred ---------------HHHHHH--------------------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf ---------------899998--------------------708986448848999999999999987762685410001 Q gi|254780573|r 79 ---------------IIERAR--------------------QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 (461) Q Consensus 79 ---------------ii~~a~--------------------~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~p 123 (461) +...+. +.| + .-...+.+...+...+++..|+|..-..+- T Consensus 195 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~-~----~~~~~~~~~~~~~~~~~~~~l~i~fd~~~~ 269 (629) T 2zue_A 195 ERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESG-E----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVW 269 (629) T ss_dssp HHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHS-S----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEE T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHEEECCCCHH T ss_conf 22102320467766677778998640165899999999986510-0----788888999999999865440440455312 Q ss_pred HHHHHHHHHHHHHH-HHHHCCCCCC-----CCCCEEECCHHC-CCC--CC--CCCCCHHHHHHHHHCCCC--CCCCCCCC Q ss_conf 23567777899999-8741143201-----289287522002-454--32--246754666643210222--21012351 Q gi|254780573|r 124 RATNHIPQMIYLIQ-NIILHGHAYE-----ANNEIIFDTSSI-PNY--GS--FSRRKIDEQKMGTRVPEK--YHKKNPAD 190 (461) Q Consensus 124 r~t~~i~~~i~~i~-~L~~~g~aY~-----~~g~VyFdv~~~-~~Y--G~--Ls~~~~~~~~~g~r~~~~--~~K~~p~D 190 (461) ...-+-..+++.+. .|.+++..|. ..|.+.++.++. ++= .. |-+.+=.-+-....+.-. -.+|...| T Consensus 270 Es~~~~~~~~e~~~~~L~~~~~~~~~~~~~~~ga~~~~~~~~~~d~~~~~~vl~ksDGt~tY~t~DIA~~~~K~~r~~~D 349 (629) T 2zue_A 270 ESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVD 349 (629) T ss_dssp HHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCC T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHCCCCC T ss_conf 65530256157889999860451145334643320122111056556540037814995456316788777665013420 Q ss_pred EEEEECCCCCCCEEE-CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCC Q ss_conf 266633776663141-4677667643320477778752984148741356666875136688886408753012100343 Q gi|254780573|r 191 FILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 (461) Q Consensus 191 FaLWK~~~~~e~~w~-spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G 269 (461) +.+=... ...|- .|=|.+-| .++.+...=|-.-|.|.. ||---+.+..-+-|-.+.+--..|.+ T Consensus 350 ~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~d~iI~V~g~~q~--~~~~~l~~~l~~lg~~~~~~~l~h~~ 414 (629) T 2zue_A 350 LLYKEWD---STTWTTAPDGKSMP----------NKFGNANIVINVIGAEQK--HPQLAIKYALQLLGFEDAAANLYHLA 414 (629) T ss_dssp CEEEECS---SSCEEEEEEEEECT----------TSSCCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCHHHHHTEEEEE T ss_pred HHHCCCC---CCCEEECCCHHHHH----------HHHCCCCEEEEECCCCHH--HHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 1200245---54304535304555----------430463579885476303--37999999999827996003537888 Q ss_pred EEEE--EECCCCCCCCCCC--CHHHHHCCCCC--------------------CCCCCCHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 2576--4202233233214--08998502533--------------------4557779999999842566432114503 Q gi|254780573|r 270 FLNL--EGRKMSKSNGNFI--TINELLETKKF--------------------GGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 (461) Q Consensus 270 ~l~i--~geKMSKSlGN~i--ti~dlL~~~~~--------------------~~k~y~p~viR~~lLsshYRspLdfS~e 325 (461) +.++ .+.|||++.|+++ ++.|+|+.... ..+.....++||++|+..-.++++|+++ T Consensus 415 ~g~v~~~~~kms~r~g~~v~~~l~dll~e~~~r~~~~i~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~FD~d 494 (629) T 2zue_A 415 YEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWE 494 (629) T ss_dssp ECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHH T ss_pred EEEEECCCCCCCEEECCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEEHCCCCCCCCCCCHH T ss_conf 76786277762000112001137779999999999999850653228899999987350023511000265534355799 Q ss_pred HHHH Q ss_conf 4687 Q gi|254780573|r 326 RLTE 329 (461) Q Consensus 326 ~L~~ 329 (461) .+.+ T Consensus 495 ~~l~ 498 (629) T 2zue_A 495 DVLN 498 (629) T ss_dssp HHSC T ss_pred HHHH T ss_conf 9963 No 25 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Probab=99.32 E-value=1.9e-11 Score=100.63 Aligned_cols=266 Identities=14% Similarity=0.101 Sum_probs=161.3 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 47999616788884441112799999999999997079984579960552338889999870898644884899999999 Q gi|254780573|r 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 (461) Q Consensus 25 ~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~ 104 (461) +|.. =--|.+-.+.||||+|+.++--.+.|- .|+ .++.-|-|.|= .| -...|+ T Consensus 66 kVvT-RFaPsPtG~LHIGhartal~N~~~Ak~---~~G----~f~LRiDDTDp---~R----------------~~~e~~ 118 (851) T 2hz7_A 66 RVVT-RFPPDPSGYAHLGHVFASLLDFNTARQ---YGG----QFNLRMDDTNP---EL----------------ARQEYV 118 (851) T ss_dssp SCEE-EECCCSSSCCBHHHHHHHHHHHHHHHH---TTC----EEEEEECCCCT---TT----------------CCHHHH T ss_pred EEEE-EECCCCCCCHHHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CC----------------CCHHHH T ss_conf 0899-508898862138999999999999998---599----99999787986---64----------------888999 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-EEEC----CHHCCCC-CCCCCCCH-------H Q ss_conf 99999877626854100012356777789999987411432012892-8752----2002454-32246754-------6 Q gi|254780573|r 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE-IIFD----TSSIPNY-GSFSRRKI-------D 171 (461) Q Consensus 105 ~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~-VyFd----v~~~~~Y-G~Ls~~~~-------~ 171 (461) +..++|++.||+.......+.|++++.+.+++++||++|+||.-.-+ =-+. ...-+.+ +.-.++.. + T Consensus 119 ~~I~edL~WLGl~wDe~~~~QSdr~~~y~e~a~~LI~~G~AY~C~cs~eei~~~R~~~~~~G~~~~yr~r~~eenl~l~~ 198 (851) T 2hz7_A 119 DSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLR 198 (851) T ss_dssp HHHHHHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCEEHHCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCHHHHH T ss_conf 99999999839989999571526899999999999986998978999999999998998479897989989245530789 Q ss_pred HHHHHH--------H--CCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 666432--------1--022221012351266633776663141467766764332047777875298414874135666 Q gi|254780573|r 172 EQKMGT--------R--VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 (461) Q Consensus 172 ~~~~g~--------r--~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~ 241 (461) +|..|. | ++....--+-+|++++.......+.-...| .|.|-.|. |+++.....|-+ --.-|.|+. T Consensus 199 ~m~~g~~~~g~~vlR~Kid~~~~n~~~rD~v~~ri~~~~h~~~gdk~-~i~PtYdf-A~vVDD~l~gIT--HVIRg~E~~ 274 (851) T 2hz7_A 199 RMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDF-EHPLQDAIEGVT--HSMCSLEFV 274 (851) T ss_dssp HHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHH-HHHHHHHHHTCS--EEEEEGGGT T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCEEECCEEEEEECCCCCCCCCCC-CCEECCCC-CEEECHHHCCCC--EEEECCCCC T ss_conf 97546545798689996566678622551404567414520247654-53052113-514136555997--798414122 Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCC---------------CCCCHHHHHCCCCCCCCCCCHHH Q ss_conf 687513668888640875301210034325764202233233---------------21408998502533455777999 Q gi|254780573|r 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG---------------NFITINELLETKKFGGRSWPAPV 306 (461) Q Consensus 242 FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlG---------------N~iti~dlL~~~~~~~k~y~p~v 306 (461) +|-.--+...+++.- .+ -.|.-|-+.|++++.+|||+.+ ...|+..+.. +||.|++ T Consensus 275 -~~tp~q~~L~~aLg~-~~-pp~~h~f~rLn~~~t~lSKRkl~~lv~~~~v~gWDDpR~~Tl~glRr------rGy~PeA 345 (851) T 2hz7_A 275 -DNRAIYDWLMEKLNF-DP-RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRR------LGVTPEA 345 (851) T ss_dssp -TTHHHHHHHHHHTTC-SS-CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHH------HTCCHHH T ss_pred -CCHHHHHHHHHCCCC-CC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH------CCCCHHH T ss_conf -248888767632468-99-97367520431466655776531235567546766764100999998------6998999 Q ss_pred HHHHHHCCCCCCCCC-CCHHHHHHH Q ss_conf 999984256643211-450346877 Q gi|254780573|r 307 IRLAMLMTHYREPID-FTVQRLTEA 330 (461) Q Consensus 307 iR~~lLsshYRspLd-fS~e~L~~A 330 (461) ||-||+.--+...-+ .....|++. T Consensus 346 i~nfl~~lG~S~~d~~~~~~~le~~ 370 (851) T 2hz7_A 346 VRAFAAQIGVSRTNRTVDIAVYENA 370 (851) T ss_dssp HHHHHHHSCCCSSCEEECHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 9999999688888754205539999 No 26 >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Probab=99.27 E-value=6.2e-09 Score=82.65 Aligned_cols=235 Identities=16% Similarity=0.215 Sum_probs=141.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) -|.+-++.||||+||+++-=++.| ..|+ +++.-|-|.|- .|.. ..|++..++|+ T Consensus 7 aPsPtG~lHiG~~rtal~n~~~ak---~~~G----~f~LRieDtD~---~R~~----------------~~~~~~I~~~l 60 (468) T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR---RNGG----RFIVRIEDTDR---ARYV----------------PGAEERILAAL 60 (468) T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH---HTTC----EEEECBCCCCT---TSCC----------------TTHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH T ss_conf 889897410799999999999999---8399----89998687997---7478----------------79999999999 Q ss_pred HHHCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---EEECCHHCCCCCCCCCC-CHHHH----HH Q ss_conf 762685410--------0012356777789999987411432012892---87522002454322467-54666----64 Q gi|254780573|r 112 TRLACLAPT--------HQPRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSRR-KIDEQ----KM 175 (461) Q Consensus 112 ~~L~v~~p~--------~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~---VyFdv~~~~~YG~Ls~~-~~~~~----~~ 175 (461) .-||+.... -.-+.|++++...+++++|+++|+||.---+ +=-.-..-+.|..-.+. ..++. .. T Consensus 61 ~wlGl~wDegp~~~~~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~cs~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 140 (468) T 1j09_A 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARR 140 (468) T ss_dssp HHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHT T ss_pred HHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC T ss_conf 98699766586778898864386279999999999997499664268789999887523788743444688888888857 Q ss_pred HH----HCCC-CC---------------CCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 32----1022-22---------------1012351266633776663141467766764332047777875298414874 Q gi|254780573|r 176 GT----RVPE-KY---------------HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 (461) Q Consensus 176 g~----r~~~-~~---------------~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~ 235 (461) |. |... .. ...+-.||++|| ..|.|-.|.- ++.-....| +.--. T Consensus 141 g~~~~iR~k~~~~~~~~~~D~i~g~~~~~~~~~~D~vi~r-------------~dg~p~y~~a-~~vdD~~~~--ithvi 204 (468) T 1j09_A 141 GEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLK-------------SDGYPTYHLA-NVVDDHLMG--VTDVI 204 (468) T ss_dssp TCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEEC-------------TTSCBCHHHH-HHHHHHHTT--CCEEE T ss_pred CCCCEEEEECCCCCCCCCCCHHCCEEEECCCCCCCEEEEC-------------CCCCCCEEEC-CCCCCCCCC--CCHHH T ss_conf 9973899864766676456200332663455589969983-------------3787131203-203641037--65454 Q ss_pred ECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCE-EEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 13566668751366888864087530121003432-57642022332332140899850253345577799999998425 Q gi|254780573|r 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 236 GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) -|.|++- +-.-.+...+|+.-..| . +.|..+ ++.+|.||||..|.+ .+.++.+ ++|.|+++.-||..- T Consensus 205 rg~d~~~-~~~~~~~l~~~l~~~~p--~-~~h~pl~~~~~g~klsKr~~~~-~~~~~~~------~G~~p~a~~NyLa~L 273 (468) T 1j09_A 205 RAEEWLV-STPIHVLLYRAFGWEAP--R-FYHMPLLRNPDKTKISKRKSHT-SLDWYKA------EGFLPEALRNYLCLM 273 (468) T ss_dssp EEGGGGG-GHHHHHHHHHHHTCCCC--E-EEEECCCBCTTSCBCCTTTSCC-BHHHHHH------TTCCHHHHHHHHHHH T ss_pred HCCCCCC-CCHHHHHHHHHCCCCCC--C-CEECCCEECCCCCCCCCCCCCC-CCHHHHH------CCCCHHHHHHHHHHH T ss_conf 1134200-67899999996268998--3-1013752357997046768973-3112754------599879999999993 Q ss_pred CCCCC Q ss_conf 66432 Q gi|254780573|r 315 HYREP 319 (461) Q Consensus 315 hYRsp 319 (461) -+..+ T Consensus 274 Gws~~ 278 (468) T 1j09_A 274 GFSMP 278 (468) T ss_dssp SCCCT T ss_pred CCCCC T ss_conf 69987 No 27 >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Probab=99.21 E-value=8e-10 Score=89.02 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=146.2 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) -.|++-++.||||+||+++--++.|- .|+ +++.-|-|.|- .|. ...|++..+++ T Consensus 134 FaPsPTG~lHiG~~rtAl~n~l~Ak~---~~G----~filRieDTD~---~R~----------------~~~~~~~I~~~ 187 (592) T 3al0_C 134 FAPSPTGHLHVGGARTALFNWMFARK---EGG----KFILRIEDTDT---ERS----------------SREYEQQILES 187 (592) T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHHH---HTC----EEEECBCCCCS---SSC----------------CHHHHHHHHHH T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHH---CCC----EEEEEECCCCC---CCC----------------CHHHHHHHHHH T ss_conf 18898974207999999999999997---599----89998677998---758----------------77999999999 Q ss_pred HHHHCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHC-CCCCCCCCCC------------ Q ss_conf 7762685410--------001235677778999998741143201289287522002-4543224675------------ Q gi|254780573|r 111 TTRLACLAPT--------HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRK------------ 169 (461) Q Consensus 111 ~~~L~v~~p~--------~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~-~~YG~Ls~~~------------ 169 (461) +..||+.... ---+-|+..+...+++++|+++|.||.- |....- ......+... T Consensus 188 L~wlGl~~Degp~~~g~~~py~QS~r~~~y~~~a~~L~~~g~AY~C-----~ct~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (592) T 3al0_C 188 LRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYV-----VYDKEDPSKELFTTYEYPHEYKEKGHPVT 262 (592) T ss_dssp HHHTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEE-----EEETTEEEEECCCCSSCCHHHHHTTCCEE T ss_pred HHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCC-----CCCHHHHHHHHHHCCCCCHHHHCCCCCCC T ss_conf 9986998676877788987842640799999999999976997530-----17889999876320027622320488620 Q ss_pred -----------HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC Q ss_conf -----------466664321022221012351266633776663141467766764332047777875298414874135 Q gi|254780573|r 170 -----------IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 (461) Q Consensus 170 -----------~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~ 238 (461) .+++..| +....-..-.||+|+| ..|.|..|+ |++.-....|-+--|- |. T Consensus 263 ~r~k~~~~~~~~~D~i~G---~i~~~~~~l~D~Vi~R-------------~Dg~ptY~~-a~vvdD~~~~ithviR--g~ 323 (592) T 3al0_C 263 IKFKVLPGKTSFEDLLKG---YMEFDNSTLEDFIIMK-------------SNGFPTYNF-AVVVDDHLMRISHVFR--GE 323 (592) T ss_dssp EEECCCSSCCEECCTTTC---SEECCSSSSCCEEEEC-------------TTSCCCHHH-HHHHHHHHTTCSBCCE--EG T ss_pred CCCCCCCCCEEEEECCCC---EEEECCCCCCCEEEEE-------------CCCCCCEEE-EEEECCCCCCCCEEEC--CC T ss_conf 011378983578764411---1553644479818995-------------289811001-1245066578874406--52 Q ss_pred CCCCCCCHHHHHH---HHHHCCCCCCHHHEECCCE-EEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 6666875136688---8864087530121003432-57642022332332140899850253345577799999998425 Q gi|254780573|r 239 DLIFPHHENEIAQ---SCCADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 239 DL~FPHHENEiAQ---s~a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) | |..|---| .+|+.-..| . +.|..+ ++.+|.||||.-|. ..|.++.+ +||-|+++.-||..- T Consensus 324 d----~~~~t~~~~~l~~alg~~~P--~-faHlPLIl~~dg~KLSKR~ga-~sV~~yre------~GylPeAllNYLalL 389 (592) T 3al0_C 324 D----HLSNTPKQLMIYEAFGWEAP--V-FMHIPLILGSDRTPLSKRHGA-TSVEHFRR------EGILSRALMNYLALL 389 (592) T ss_dssp G----GGGGHHHHHHHHTTTTCCCC--B-CCEECCCBCTTSSBCCTTTCS-SBHHHHHH------TTCCHHHHHHHHTTT T ss_pred C----CCCCHHHHHHHHHHHCCCCC--C-EEEECCEECCCCCCCCCCCCC-CCHHHHHH------CCCCCHHHHHHHHHH T ss_conf 0----21470999999998277997--1-166110236898755556797-52789987------799948999999983 Q ss_pred CCCCC Q ss_conf 66432 Q gi|254780573|r 315 HYREP 319 (461) Q Consensus 315 hYRsp 319 (461) -|+.+ T Consensus 390 GWS~~ 394 (592) T 3al0_C 390 GWRVE 394 (592) T ss_dssp TBCCC T ss_pred CCCCC T ss_conf 68986 No 28 >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} Probab=99.16 E-value=2e-09 Score=86.22 Aligned_cols=251 Identities=16% Similarity=0.214 Sum_probs=153.9 Q ss_pred CEEEECCCCCEEEEE-ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH Q ss_conf 418988898262233-0479847999616788884441112799999999999997079984579960552338889999 Q gi|254780573|r 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 (461) Q Consensus 5 l~lyntlt~~~~~f~-p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a 83 (461) .++||-|+-.-+.+. .... |+. =--|++-++.||||+||+++-=+..|- .|+ +|+.-|-|.|-+ |+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~--vr~-RfaPsPtG~lHiG~~rtal~n~~~a~~---~~g----~f~lRieDtD~~---R~ 72 (488) T 3afh_A 6 GAFFDILEVGPKKIRRCFEL--VRV-RFAPSPTGHLHVGGARTALFNWMFARK---EGG----KFILRIEDTDTE---RS 72 (488) T ss_dssp -------------------C--CEE-EECCCCSSSCBHHHHHHHHHHHHHHHH---HTC----EEEECBCCCCTT---TC T ss_pred HHHHHHHHHCHHHHHCCCCE--EEE-EECCCCCCCCCHHHHHHHHHHHHHHHH---CCC----EEEEEECCCCCC---CC T ss_conf 88999986385975105885--578-738798985418999999999999998---299----899986889987---58 Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE Q ss_conf 8708986448848999999999999987762685410001---------2356777789999987411432012892875 Q gi|254780573|r 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP---------RATNHIPQMIYLIQNIILHGHAYEANNEIIF 154 (461) Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~p---------r~t~~i~~~i~~i~~L~~~g~aY~~~g~VyF 154 (461) ...+++..+++++-||+... .-| +-|+..+-..+++++|+++|.||.- |. T Consensus 73 ----------------~~~~~~~i~~~L~wlgl~~D-e~~~~~g~~~py~QS~r~~~y~~~~~~L~~~g~ay~c----~~ 131 (488) T 3afh_A 73 ----------------SREYEQQILESLRWCGLDWD-EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYV----VY 131 (488) T ss_dssp ----------------CHHHHHHHHHHHHHTTCCCS-BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE----EE T ss_pred ----------------CHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCC----CC T ss_conf ----------------87999999999997699877-6867788887741854899999999999865996545----57 Q ss_pred CCHHCCCCCCCCCCCHHHH-HHH------------HH-------CCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCC Q ss_conf 2200245432246754666-643------------21-------022221012351266633776663141467766764 Q gi|254780573|r 155 DTSSIPNYGSFSRRKIDEQ-KMG------------TR-------VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 (461) Q Consensus 155 dv~~~~~YG~Ls~~~~~~~-~~g------------~r-------~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 214 (461) .-.....+...+....... ..| .. .+....-..-.||+|+| ..|-|. T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~D~i~G~~~~~~~~l~D~vi~r-------------~dg~pt 198 (488) T 3afh_A 132 DKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMK-------------SNGFPT 198 (488) T ss_dssp CSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEEC-------------TTSCBC T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEE-------------CCCCCE T ss_conf 9999998852011078543346886202201688886435340346653776678838994-------------389800 Q ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH---HHHHCCCCCCHHHEECCCE-EEEEECCCCCCCCCCCCHHH Q ss_conf 3320477778752984148741356666875136688---8864087530121003432-57642022332332140899 Q gi|254780573|r 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ---SCCADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINE 290 (461) Q Consensus 215 WHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQ---s~a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~iti~d 290 (461) .|+ |++.-....|-+-- .-|.|+ -.|--.| .+|+.-..| -|.|..+ ++.+|.|+||-.|. +.+.+ T Consensus 199 y~~-a~vvdD~~~~ithv--iRg~d~----~~~t~~~~~l~~~lg~~~P---~~~H~pli~~~~~~klSKR~g~-~si~~ 267 (488) T 3afh_A 199 YNF-AVVVDDHLMRISHV--FRGEDH----LSNTPKQLMIYEAFGWEAP---VFMHIPLILGSDRTPLSKRHGA-TSVEH 267 (488) T ss_dssp HHH-HHHHHHHHTTCSEE--EEEGGG----GGGHHHHHHHHHHHTCCCC---EEEEECCEECTTSSBCCTTTSC-CBHHH T ss_pred EEE-EEEECCCCCCCCEE--ECCCCC----CCCCHHHHHHHHHHCCCCC---CEEEECCEECCCCCCCCCCCCC-CCHHH T ss_conf 212-24864644788678--447545----4680999999998267898---2377223007998754532488-60124 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 85025334557779999999842566432 Q gi|254780573|r 291 LLETKKFGGRSWPAPVIRLAMLMTHYREP 319 (461) Q Consensus 291 lL~~~~~~~k~y~p~viR~~lLsshYRsp 319 (461) +.+ ++|-|+++.-||..--++.+ T Consensus 268 yr~------~GylPeAl~NyLa~LGws~~ 290 (488) T 3afh_A 268 FRR------EGILSRALMNYLALLGWRVE 290 (488) T ss_dssp HHH------HTCCHHHHHHHHHHTTCCCS T ss_pred HHH------CCCCCHHHHHHHHHHCCCCC T ss_conf 865------69995799999998379986 No 29 >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Probab=99.11 E-value=4e-10 Score=91.20 Aligned_cols=256 Identities=16% Similarity=0.068 Sum_probs=156.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) -|++-++.||||||++++--++.|- .|+ +++.=|=|+|- .|. ...|++..++|+ T Consensus 32 APsPtG~LHiG~artAl~n~~~Ak~---~~G----~fiLRiEDTD~---~R~----------------~~e~~~~I~edL 85 (553) T 1qtq_A 32 PPEPNGYLHIGHAKSICLNFGIAQD---YKG----QCNLRFDDTNP---VKE----------------DIEYVESIKNDV 85 (553) T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHH---TTC----EEEEEECCCCG---GGC----------------CHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCC----------------CHHHHHHHHHHH T ss_conf 9798975308999999999999998---199----89999788997---647----------------879999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH-HCC-------------CCCCCC-CCCH---HHH Q ss_conf 7626854100012356777789999987411432012892875220-024-------------543224-6754---666 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS-SIP-------------NYGSFS-RRKI---DEQ 173 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~-~~~-------------~YG~Ls-~~~~---~~~ 173 (461) +.||+..+.-.-+.|++.+...+++++|+++|.||.- |... .+. .|-..+ ..++ +.+ T Consensus 86 ~WLGl~wDe~~~~QSer~~~Y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~~ 160 (553) T 1qtq_A 86 EWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVD-----ELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKM 160 (553) T ss_dssp HHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEE-----CCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHH T ss_pred HHCCCCCCCCCEEHHHCHHHHHHHHHHHHHCCCEEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH T ss_conf 9779989988502211599999999999986995755-----78999999988778727999997764313677777887 Q ss_pred HHHHH--------CC--CCCCCCCCCCEEEEECCCCCCC--EEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 64321--------02--2221012351266633776663--141467766764332047777875298414874135666 Q gi|254780573|r 174 KMGTR--------VP--EKYHKKNPADFILWKRSTPMEP--GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 (461) Q Consensus 174 ~~g~r--------~~--~~~~K~~p~DFaLWK~~~~~e~--~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~ 241 (461) ..|.. .. .......-+|++++.......+ .+. ..|.|--|+-|+ +-....| +.-..-|.||. T Consensus 161 ~~~~~~~~~~~~r~~~d~~~~~~~~~d~~~~~~~~~~~d~v~~k---~dg~PtY~fA~v-VDD~l~g--ITHViRG~D~l 234 (553) T 1qtq_A 161 RAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNK---WCIYPMYDFTHC-ISDALEG--ITHSLCTLEFQ 234 (553) T ss_dssp HTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTS---CSEEECHHHHHH-HHHHHTT--CSEEEEEGGGT T ss_pred HHCCCCCCEEEEECCCCCCCCCEEEECCEEEEECCCCCCCEEEC---CCCCCCCCHHCH-HHHHHCC--CCEEEEEEECC T ss_conf 63577753267512446654641788888988504456525433---545400000021-5577647--97898510033 Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCC---------------CCCCHHHHHCCCCCCCCCCCHHH Q ss_conf 687513668888640875301210034325764202233233---------------21408998502533455777999 Q gi|254780573|r 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG---------------NFITINELLETKKFGGRSWPAPV 306 (461) Q Consensus 242 FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlG---------------N~iti~dlL~~~~~~~k~y~p~v 306 (461) - .-.-.+...+++.- +...|+.|-+.|+++|.+|||+-. +..+++.+.. +||.|++ T Consensus 235 ~-st~~q~~l~~aLg~--~~p~~~h~~l~l~~~~~~lskrhl~~~v~~~~~~~~d~~~~~ti~~~r~------~G~~peA 305 (553) T 1qtq_A 235 D-NRRLYDWVLDNITI--PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRR------RGYTAAS 305 (553) T ss_dssp T-THHHHHHHHHTSCC--SCCCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHH------HTCCHHH T ss_pred C-CCHHHHHHHHHCCC--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH------CCCCHHH T ss_conf 4-66799999972478--8885377665753555432002242013577777666887502889988------6998699 Q ss_pred HHHHHHCCCCCCCC-CCCHHHHHHHHHH Q ss_conf 99998425664321-1450346877764 Q gi|254780573|r 307 IRLAMLMTHYREPI-DFTVQRLTEAEIL 333 (461) Q Consensus 307 iR~~lLsshYRspL-dfS~e~L~~A~~~ 333 (461) |+-||+.--+..+- ......|++.... T Consensus 306 i~nfl~~lG~s~~~~~~e~~~l~~~~~~ 333 (553) T 1qtq_A 306 IREFCKRIGVTKQDNTIEMASLESCIRE 333 (553) T ss_dssp HHHHHHHHCCCSSCCCBCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 9999998387888773046759999986 No 30 >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Probab=97.73 E-value=0.00028 Score=49.41 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=100.7 Q ss_pred CCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 98479996-16788884441112799999999999997079984579960552338889999870898644884899999 Q gi|254780573|r 23 PSNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITS 101 (461) Q Consensus 23 ~~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~ 101 (461) ....++|+ ++|| ..+||||.-++ -.++.+++ .|++ |.+. |+|..- ++.. .+.+. ......++ T Consensus 37 ~~~~~iytG~~PT--G~lHlGh~v~~---ik~~~~~~-~g~~--~~i~--IaD~~a-~~~~---~~~~~---e~i~~~~~ 99 (394) T 2dlc_X 37 KRHLKLYWGTAPT--GRPHCGYFVPM---TKLADFLK-AGCE--VTVL--LADLHA-FLDN---MKAPL---EVVNYRAK 99 (394) T ss_dssp CSCCEEEEEECCC--SCCBGGGHHHH---HHHHHHHH-TTCE--EEEE--ECHHHH-HHTT---TSSCT---THHHHHHH T ss_pred CCCCEEEEEECCC--CCCHHHHHHHH---HHHHHHHH-CCCC--EEEE--ECCHHH-HCCC---CCCCH---HHHHHHHH T ss_conf 9997799826988--62479999999---99999997-8990--8999--716153-1179---99988---99999999 Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 9999999987762685410-001235677778999998741143201289287522002454322467546666432102 Q gi|254780573|r 102 KNTQQFVKDTTRLACLAPT-HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p~-~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~ 180 (461) .|...+..-+.++++.+-. .+-.-|+. +..-++...+. ++.....+ ..+. +.. T Consensus 100 ~~~~~i~~il~a~g~d~~k~~~~~~S~~-~~~~~~~~~l~-----------------~l~~~~~~-----~~~~---~~~ 153 (394) T 2dlc_X 100 YYELTIKAILRSINVPIEKLKFVVGSSY-QLTPDYTMDIF-----------------RLSNIVSQ-----NDAK---RAG 153 (394) T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEETHHH-HTSHHHHHHHH-----------------HHHTTSCH-----HHHH---HHT T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCH-HHHHHHHHHHH-----------------HHHHHHHH-----HHHH---HHH T ss_conf 9999999999862899552599988834-54145899999-----------------99779799-----9999---888 Q ss_pred CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCC Q ss_conf 2221012351266633776663141467766764332047777875298414874135666687513--66888864087 Q gi|254780573|r 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRI 258 (461) Q Consensus 181 ~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~ 258 (461) ....|.. .+ ..-++.. .| .-|+..+|--..|+--||+|=.+ |++- ++|+. .... T Consensus 154 ~~~~~~~-~~------~~~~~~~--------YP------~lQaaDil~~~ad~v~~G~DQ~~-~~~l~Rd~a~~--~~~~ 209 (394) T 2dlc_X 154 ADVVKQV-AN------PLLSGLI--------YP------LMQALDEQFLDVDCQFGGVDQRK-IFVLAEENLPS--LGYK 209 (394) T ss_dssp TTTSCCC-SS------CCTHHHH--------HH------HHHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGG--GTCC T ss_pred HHHHCCC-CC------CCHHHHH--------HH------HHHHHHHHHCCCCEEEEECCHHH-HHHHHHHHHHH--HCCC T ss_conf 8874245-79------7278886--------45------77641234336878724211588-99999999997--2789 Q ss_pred CCCHHHEECCCEEE-E-EECCCCCCCCC-CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 53012100343257-6-42022332332-14089985025334557779999999842566432 Q gi|254780573|r 259 EKTANIWIHNGFLN-L-EGRKMSKSNGN-FITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 (461) Q Consensus 259 ~~~a~yWlH~G~l~-i-~geKMSKSlGN-~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRsp 319 (461) .+. =+|.-+|. + +|.|||||.+| .|.+. -+|+.++-=+.++ |-.| T Consensus 210 ~~~---~l~~p~l~gL~g~~KMSkS~~ns~I~l~------------D~p~~i~kKI~ka-~td~ 257 (394) T 2dlc_X 210 KRA---HLMNPMVPGLAQGGKMSASDPNSKIDLL------------EEPKQVKKKINSA-FCSP 257 (394) T ss_dssp CCE---EEEECCCCCCC----------CCSCBTT------------CCHHHHHHHHHHS-CCCT T ss_pred CCE---EEECCCEECCCCCCCCCCCCCCCEEEEE------------CCHHHHHHHHHHC-CCCC T ss_conf 965---9961640379988777888999879752------------6999999999812-4799 No 31 >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Probab=97.27 E-value=0.0021 Score=43.20 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=49.3 Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCC Q ss_conf 777875298414874135666687513--668888640875301210034325764202233233214089985025334 Q gi|254780573|r 221 AMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 (461) Q Consensus 221 am~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~ 298 (461) -|+..++-...|+.-||+|=.. |++- ++|.. ....++++ -.+.=+...+|+|||||.||.|.+.| T Consensus 161 lQa~D~~~~~~~~~~~G~DQ~~-~~~l~r~~~~r--~~~~~~~~--l~~p~l~~ldG~KmskS~~n~I~L~D-------- 227 (323) T 2cyb_A 161 MQALDIAHLGVDLAVGGIDQRK-IHMLARENLPR--LGYSSPVC--LHTPILVGLDGQKMSSSKGNYISVRD-------- 227 (323) T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGG--GTCCCCEE--EEECCCBCTTSSBCCTTTTCSCBTTC-------- T ss_pred HHHHHHHHCCCCEEEECCHHHH-HHHHHHHHHHH--HCCCCEEE--EECCCCCCCCCCCCCCCCCCEEECCC-------- T ss_conf 2245676325544650320567-88999999997--07875047--61685237788635789988644237-------- Q ss_pred CCCCCHHHHHHHHHCCCC Q ss_conf 557779999999842566 Q gi|254780573|r 299 GRSWPAPVIRLAMLMTHY 316 (461) Q Consensus 299 ~k~y~p~viR~~lLsshY 316 (461) +|+.++--+.++-. T Consensus 228 ----~pe~i~kKI~~a~t 241 (323) T 2cyb_A 228 ----PPEEVERKIRKAYC 241 (323) T ss_dssp ----CHHHHHHHHHTSCC T ss_pred ----CHHHHHHHHEEEEC T ss_conf ----85899886615226 No 32 >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Probab=97.23 E-value=0.0033 Score=41.71 Aligned_cols=186 Identities=18% Similarity=0.194 Sum_probs=93.2 Q ss_pred CEEEEEE-ECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 8479996-16788884-441112799999999999997079984579960552338889999870898644884899999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDF-AHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITS 101 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~-~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~ 101 (461) ..+.+|+ .+|| .. .||||.-+++. + |+|...|.. ..+.-|+|.. ++..+ ..+ + +..+ T Consensus 77 k~~~vytG~~PS--g~~lHLGh~v~~~~---~-~~lQ~~~~~---~~~I~iaD~~-~~~~~----~~~------~-~~~~ 135 (395) T 3i05_A 77 QPFYLYTGRGPS--SESMHMGHLIPFMF---T-KWLQDSFRV---PLVIQMTDDE-KFYFR----NIP------M-EQVE 135 (395) T ss_dssp CCEEEEEEECCC--SSCCBGGGSHHHHH---H-HHHHHHHTC---CEEEEECHHH-HHHHS----CCC------H-HHHH T ss_pred CCEEEEECCCCC--CCCCHHHHHHHHHH---H-HHHHHCCCC---CEEEEECCHH-HCCCC----CCC------H-HHHH T ss_conf 983899584789--86420999999999---9-999863786---0599815453-31377----999------9-9999 Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 9999999987762685410-001235677778999998741143201289287522002454322467546666432102 Q gi|254780573|r 102 KNTQQFVKDTTRLACLAPT-HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p~-~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~ 180 (461) ++..++.+++-++++.|.. ..-.-|+++..+...+-+|- +.. .+.++..-. T Consensus 136 ~~~~~~~~~~lA~G~Dp~kt~i~~~s~~~~~~~~~~~~l~-----------------~~~--------t~~~~~~~~--- 187 (395) T 3i05_A 136 AMTTENIKDIIAMGFDPELTFIFRDFDYMGCMYRTVAKIE-----------------RAF--------TASQVRGCF--- 187 (395) T ss_dssp HHHHHHHHHHHTTTCCTTSEEEEEHHHHTTTSHHHHHHHH-----------------HHS--------BHHHHHHHH--- T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH-----------------CCC--------CCCHHHHHH--- T ss_conf 9999999999982899314499955487887899999996-----------------666--------402698874--- Q ss_pred CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCC------------CCEEEEEECCCCCCCCCHH- Q ss_conf 222101235126663377666314146776676433204777787529------------8414874135666687513- Q gi|254780573|r 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG------------KVFDIHGGGLDLIFPHHEN- 247 (461) Q Consensus 181 ~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg------------~~~DIH~GG~DL~FPHHEN- 247 (461) ..+.+ .+-|+..++ ..|+...|- ..-||--||+|= -||++- T Consensus 188 --gf~~~---------~~~g~~~YP--------------~lQaaDil~~~~~~~~~~~~~~~~~lvpvG~DQ-~~~~~lt 241 (395) T 3i05_A 188 --GFAME---------DNCGRWMFP--------------AIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQ-DPYFRLT 241 (395) T ss_dssp --CCCTT---------SBHHHHHHH--------------HHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGG-HHHHHHH T ss_pred --CCCCC---------CCCCCCCCC--------------HHHHCCHHHHCCHHHHCCCCCCCCCCCCCCHHH-HHHHHHH T ss_conf --56777---------655300331--------------454200675335143033224567612156678-9999999 Q ss_pred -HHHHHHHHCCCCCCHHHEECCCEEE-EEE--CCCCCCCCCCCCHH Q ss_conf -6688886408753012100343257-642--02233233214089 Q gi|254780573|r 248 -EIAQSCCADRIEKTANIWIHNGFLN-LEG--RKMSKSNGNFITIN 289 (461) Q Consensus 248 -EiAQs~a~~~~~~~a~yWlH~G~l~-i~g--eKMSKSlGN~iti~ 289 (461) ++|+.- ...+|. =+|+-+|. ++| .|||||.+|.|.+. T Consensus 242 Rdia~k~--~~~~p~---~~~~~~l~gL~G~~kkmSss~~~~I~L~ 282 (395) T 3i05_A 242 RDIAPRL--GYLKPA---VIHSKFFPGLSGPKGKMSSSSGTAVLLT 282 (395) T ss_dssp HHTHHHH--TCCCCE---EEEECCCCCC-------------CCBTT T ss_pred HHHHHHH--CCCCCE---EECCCCCCCCCCCCCCCCCCCCCEEECC T ss_conf 9999982--678760---1136665557799877788998741457 No 33 >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3} Probab=96.80 E-value=0.0076 Score=39.17 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=47.2 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHH-------HEECCCEEE-------------------E Q ss_conf 77778752984148741356666875136688886408753012-------100343257-------------------6 Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN-------IWIHNGFLN-------------------L 273 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~-------yWlH~G~l~-------------------i 273 (461) .-|+..+|-...|+--||+|-. ||+|--+-...-.+.. .-+. .=+|+.+|. . T Consensus 170 ~lQaaDil~~~~~~vpvG~DQ~-~~~~l~rdia~k~n~~-~~~~~~~~~~~~~~~~~~l~gL~~~~~~~~~~~~~~~~~~ 247 (375) T 2cyc_A 170 MMQVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKLRYH-PIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIK 247 (375) T ss_dssp HHHHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGCSSS-CEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 2656679886302255552025-8999999999983887-6655566553122114455576664323332222345666 Q ss_pred EECCCCCCCC-CCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 4202233233-21408998502533455777999999984256643211 Q gi|254780573|r 274 EGRKMSKSNG-NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 (461) Q Consensus 274 ~geKMSKSlG-N~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd 321 (461) .|.|||||.+ |.|.+.| +|+.++==+.. +|..|-+ T Consensus 248 ~~~KMSkS~~~s~I~L~D------------tpe~I~kKI~k-a~td~~~ 283 (375) T 2cyc_A 248 AQMKMSKSKPYSAVFIHD------------SPEEIRQKLRK-AFCPARE 283 (375) T ss_dssp HHHBGGGSCGGGSCBTTC------------CHHHHHHHHHH-SCCCTTC T ss_pred CCCCCCCCCCCCEEEECC------------CHHHHHHHHHH-CCCCCCC T ss_conf 777676689888676118------------99999999875-2079876 No 34 >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A* Probab=96.65 E-value=0.0017 Score=43.78 Aligned_cols=83 Identities=23% Similarity=0.147 Sum_probs=50.9 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHH-CCC---CCCHHHEECC-CEEEEEEC-CCCCCCCCCCCHHHH Q ss_conf 7777875298414874135666687513--66888864-087---5301210034-32576420-223323321408998 Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCA-DRI---EKTANIWIHN-GFLNLEGR-KMSKSNGNFITINEL 291 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~-~~~---~~~a~yWlH~-G~l~i~ge-KMSKSlGN~iti~dl 291 (461) ..|+..+|...-||--||+|=+. |||= ++|...-. ++. .|-. .-.|. .+-.++|. |||||.+|.|.+.| T Consensus 152 ~lQaaDi~~~~~divpvG~DQ~~-h~~LaRdia~~~n~~~~~~~~~P~~-~~~~~~~l~gL~g~~KmSkS~~~~I~l~D- 228 (351) T 1yi8_B 152 VSQAADIAAFGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQA-QLSRVPRLPGLDGQAKMSKSLGNAIALGD- 228 (351) T ss_dssp HHHHHHHHHHTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEE-EECSSCSCCCTTSSSCCCTTTTCCCBTTC- T ss_pred HHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCCCCCHH-HHHHCCCCCCCCCCHHCCCCCCCCCCCCC- T ss_conf 87651465405544677623799-9999999999954004776678667-76413456577750110368533467789- Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 5025334557779999999842566 Q gi|254780573|r 292 LETKKFGGRSWPAPVIRLAMLMTHY 316 (461) Q Consensus 292 L~~~~~~~k~y~p~viR~~lLsshY 316 (461) +|+.++-=+..+.. T Consensus 229 -----------~~~~I~kKI~ka~t 242 (351) T 1yi8_B 229 -----------SADEVARKVMGMYT 242 (351) T ss_dssp -----------CHHHHHHHHHTCCC T ss_pred -----------CHHHHHHHHHHCCC T ss_conf -----------99999999871245 No 35 >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Probab=96.64 E-value=0.0028 Score=42.23 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=97.8 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 98479996167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 23 ~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) +.+.++|+ |..+-..+|||| ++.+-.+++.++ .|+. |.++ |.|..-.+-.. ...++ +..+. T Consensus 33 ~~~~~vyt-Gi~PTG~lHLGh---~~~~~~~~~lq~-~g~~--~~~~--iaD~~a~~~~~---------~~~~~-~~~~~ 93 (364) T 2cya_A 33 GARIKGYI-GYEPSGVAHIGW---LVWMYKVKDLVE-AGVD--FSVL--EATWHAYINDK---------LGGDM-DLIRA 93 (364) T ss_dssp CSCCEEEE-EECCCSSCBTHH---HHHHHHHHHHHH-TTCE--EEEE--ECHHHHHHTTG---------GGGCH-HHHHH T ss_pred CCCCEEEE-CCCCCCCCHHHH---HHHHHHHHHHHH-CCCC--EEEE--EEEHHHHHCCC---------CCCCH-HHHHH T ss_conf 99977997-648897243899---999999999987-8995--3999--84487775587---------77618-89987 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 99999998776268541000123567777899999874114320128928752200245432246754666643210222 Q gi|254780573|r 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~ 182 (461) ....+...+.++++.+-...-.-+..+..--++...+ .++...+.+ ..+.. .... T Consensus 94 ~~~~~~~~~~a~g~~~~~~~~~~~s~~~~~~~~~~~~-----------------~~l~~~~~l-----~~~~~---~~~~ 148 (364) T 2cya_A 94 AARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLV-----------------IRVAKRASL-----ARVRR---ALTI 148 (364) T ss_dssp HHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHH-----------------HHHHHTSCH-----HHHHT---TC-- T ss_pred HHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHH-----------------HHHHHCCCC-----CCCHH---HHHH T ss_conf 5999998898608971314530331765237899999-----------------998532343-----32004---6778 Q ss_pred CCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCC Q ss_conf 21012351266633776663141467766764332047777875298414874135666687513--6688886408753 Q gi|254780573|r 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEK 260 (461) Q Consensus 183 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~ 260 (461) ..|.... ...+.|+..++ .-|+...|-...|+--||.|= -||+|- ++|+. .+...+ T Consensus 149 ~~r~~~~-----~~~~~g~~~YP--------------~LQaaDil~~~ad~vpvG~DQ-~~hl~l~Rdia~k--~n~~~~ 206 (364) T 2cya_A 149 MGRRAEE-----AEVDASKLIYP--------------LMQVSDIFYMDLDIALGGMDQ-RKAHMLARDVAEK--LGRKKP 206 (364) T ss_dssp ----CCG-----GGSCTHHHHHH--------------HHHHHHHHHTTCSEEEEEGGG-HHHHHHHHHHHTT--TTCCCC T ss_pred HHHHHCC-----CCCCCCEEECC--------------CCHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHH--HCCCCC T ss_conf 7665127-----88666422024--------------311566776643023566678-8999999999998--379887 Q ss_pred CHHHEECCCEEE-EE-----------------ECCCCCCCCC-CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 012100343257-64-----------------2022332332-14089985025334557779999999842566432 Q gi|254780573|r 261 TANIWIHNGFLN-LE-----------------GRKMSKSNGN-FITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 (461) Q Consensus 261 ~a~yWlH~G~l~-i~-----------------geKMSKSlGN-~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRsp 319 (461) +=+|+-++. .+ +.|||||.+| .|.+.| +|+.++-=+.. +|..| T Consensus 207 ---~~l~~p~~~~l~g~~~~~~s~~~~~~~~~~~KMSkS~~~s~I~l~D------------~~e~I~kKI~k-a~td~ 268 (364) T 2cya_A 207 ---VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD------------SDDDIRRKIRK-AYCPA 268 (364) T ss_dssp ---EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC------------CHHHHHHHHHT-SCCCT T ss_pred ---EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC------------CHHHHHHHHHH-HCCCC T ss_conf ---0221576556776430233434555677776666789766235238------------98999999876-11798 No 36 >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima} Probab=96.55 E-value=0.0033 Score=41.73 Aligned_cols=85 Identities=25% Similarity=0.171 Sum_probs=53.6 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCC---HHHEECC-CEEEEEECCCCCCCCCCCCHHHHHC Q ss_conf 7777875298414874135666687513--66888864087530---1210034-3257642022332332140899850 Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKT---ANIWIHN-GFLNLEGRKMSKSNGNFITINELLE 293 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~---a~yWlH~-G~l~i~geKMSKSlGN~iti~dlL~ 293 (461) ..|+...|-...|+--+|.|-+. |||- ++|+..-..-..-| .-+-.+. .+...+|.|||||-+|.|.+. T Consensus 143 ~lqaaDil~~~~~~v~~G~DQ~~-~~~l~R~ia~k~n~~~~~~~~~p~~~~~~~~~l~~~~g~KmSkS~~~~I~l~---- 217 (340) T 2g36_A 143 VLQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLE---- 217 (340) T ss_dssp HHHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTT---- T ss_pred HHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC---- T ss_conf 55310234225777766377899-9999999999876520334678631012356789999997888745555202---- Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 253345577799999998425664 Q gi|254780573|r 294 TKKFGGRSWPAPVIRLAMLMTHYR 317 (461) Q Consensus 294 ~~~~~~k~y~p~viR~~lLsshYR 317 (461) -+|+.+|--+..+... T Consensus 218 --------D~~~~i~kKI~ka~td 233 (340) T 2g36_A 218 --------ISEKELEQTILRMMTD 233 (340) T ss_dssp --------CCHHHHHHHHHTCCCC T ss_pred --------CCHHHHHHHHHEECCC T ss_conf --------7657887765510469 No 37 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Probab=96.44 E-value=0.0082 Score=38.90 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=37.1 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEE--EECCCCCCCCCCCCHH Q ss_conf 41487413566668751366888864087530121003432576--4202233233214089 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITIN 289 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i--~geKMSKSlGN~iti~ 289 (461) ..|+.-||+|=.. |++.-+=...-..... .+.+|+-+|.- +|+|||||.||.|.+. T Consensus 187 ~~~~~~gG~DQ~~-~i~~~rd~~~r~~~~~---~~~~~~p~l~~~~g~~KmskS~~~~i~l~ 244 (432) T 1h3f_A 187 RADVEMGGTDQRF-NLLVGREVQRAYGQSP---QVCFLMPLLVGLDGREKMSKSLDNYIGLT 244 (432) T ss_dssp TCSEEEEEGGGHH-HHHHHHHHHHHTTCCC---CEEEEECCCBCTTSSSBCCGGGTCCCBTT T ss_pred CCCCCCCCHHHHH-HHHHHHHHHHHCCCCC---CEEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 0677667373799-9998889888618877---36997375403787676668999971326 No 38 >3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni} Probab=96.38 E-value=0.00081 Score=46.11 Aligned_cols=203 Identities=18% Similarity=0.123 Sum_probs=103.8 Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--HHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 7999616788884441112799999999999--99707998457996055233888999987089864488489999999 Q gi|254780573|r 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRL--LRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 26 v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~--L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) +|+|+ |.-+-+.+||||+-+.+ +.+ |+ .+++ |.+. |+|.. .++.. .++.++ +++ T Consensus 4 ~rv~t-G~~PSG~~HlG~~lg~i-----~~~~~lQ-~~~~--~~~~--iaD~h-a~~~~-----------~~~~~l-~~~ 59 (322) T 3m5w_A 4 MRVLT-GLQPSGDLHIGNYFGAI-----KQMVDAQ-EKSQ--MFMF--IANYH-AMTSS-----------QDGEKL-KQN 59 (322) T ss_dssp CCBEE-EECCSSCCBHHHHHHTH-----HHHHHTT-TTSC--CEEE--ECTTT-HHHHC-----------CCHHHH-HHH T ss_pred CEEEE-CCCCCCCCHHHHHHHHH-----HHHHHHH-CCCC--EEEE--EEEHH-HHCCC-----------CCHHHH-HHH T ss_conf 62676-50789705478789999-----9999987-1698--8999--93141-61169-----------799999-999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 99999987762685410001235677778999998741143201289287522002454322467546666432102222 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~ 183 (461) ..++..++.++++.|..........+++.-++.-.| ++....|.|.+.. +..... T Consensus 60 ~~~~~~~~~a~G~dp~k~~i~~qs~~~~~~~l~~~l-----------------~~~~~~~~l~~~~--------~~~~~~ 114 (322) T 3m5w_A 60 SLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWIL-----------------SQFTPMGLLERAH--------SYKDKV 114 (322) T ss_dssp HHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHH-----------------HHTCBHHHHHTCH--------HHHC-- T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH-----------------HHHHHHHHHHHHH--------HHHHHH T ss_conf 999999999828999857999888505678999999-----------------8861148987633--------311110 Q ss_pred CCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHC-CC-- Q ss_conf 1012351266633776663141467766764332047777875298414874135666687513--668888640-87-- Q gi|254780573|r 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCAD-RI-- 258 (461) Q Consensus 184 ~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~-~~-- 258 (461) .+.. ....|...++ ..|+...|-...|+--||.|=+. |+|= ++|+..-.. +. T Consensus 115 ~~~~--------~~~~~~~~YP--------------~lqaaDil~~~~~~vpvG~DQ~~-h~~ltRdia~k~n~~~~~~~ 171 (322) T 3m5w_A 115 AKGL--------SASHGLFSYP--------------VLMAADILLFDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIF 171 (322) T ss_dssp -------------CBHHHHHHH--------------HHHHHHHHHTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHSSCS T ss_pred CCCC--------CCCCCCCCCC--------------HHHHHHHHHHCCCEEECCCCHHH-HHHHHHHHHHHHHHHCCCCC T ss_conf 3446--------7650401777--------------77744567627862222655189-99999999999875537654 Q ss_pred -CCCHHHEECC---CEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf -5301210034---3257642022332332140899850253345577799999998425 Q gi|254780573|r 259 -EKTANIWIHN---GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 259 -~~~a~yWlH~---G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) .|-+ -+|. -.+..+|.|||||.+|.|.+.| +|+.+|==+.++ T Consensus 172 ~~p~~--~~~~~~~~~~~~~~~KMSkS~~n~I~l~D------------~~~~I~kKI~ka 217 (322) T 3m5w_A 172 TLPEA--RVNEEVAVVVGTDGAKMSKSYQNTIDIFS------------SEKTLKKQISSI 217 (322) T ss_dssp CCCEE--EC----CCCBCTTSSBCCGGGTCCCBSSS------------CHHHHHHHHHTC T ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CHHHHHHHHHCC T ss_conf 43200--13432000368999867778887553556------------888998866504 No 39 >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A* Probab=96.05 E-value=0.0039 Score=41.26 Aligned_cols=201 Identities=17% Similarity=0.140 Sum_probs=94.5 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 79847999616788884441112799999999999997079984579960552338889999870898644884899999 Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITS 101 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~ 101 (461) .+++-++| ||..+-..+||||+- .+-.+++.. ..|++ |.+ =|.|..-.|-.. +-.+-.+ T Consensus 25 ~~~~~~vy-~G~~PTG~lHLGh~~---~i~~~~~lq-~~g~~--~~~--~iaD~~a~i~~~------------~~~~~~r 83 (314) T 2zp1_A 25 KKDEKSAY-IGFEPSGKIHLGHYL---QIKKMIDLQ-NAGFD--III--LLADLAAYLNQK------------GELDEIR 83 (314) T ss_dssp TSSSEEEE-EEECCCSSCBHHHHH---HHHHHHHHH-HTTEE--EEE--EECHHHHHHTTC------------CCHHHHH T ss_pred HCCCCEEE-EEECCCCCCHHHHHH---HHHHHHHHH-HCCCC--EEE--ECCCHHHHHHCC------------CCHHHHH T ss_conf 36999699-946899704489999---999999999-77996--899--816546665215------------8999988 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCC-CCHHHHHHHHHC Q ss_conf 99999999877626854100012356-7777899999874114320128928752200245432246-754666643210 Q gi|254780573|r 102 KNTQQFVKDTTRLACLAPTHQPRATN-HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR-RKIDEQKMGTRV 179 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p~~~pr~t~-~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~-~~~~~~~~g~r~ 179 (461) .....+..++.++++.+ ... .-++ ..+. ++...+ ..|+. ..+..+..-... T Consensus 84 ~~~~~~~~~~~a~g~~~-~~~-~~~~~~~~~--~~~~~l-----------------------~~l~~~~~~~~~~~~~~~ 136 (314) T 2zp1_A 84 KIGDYNKKVFEAMGLKA-KYV-YGSEFQLDK--DYTLNV-----------------------YRLALKTTLKRARRSMEL 136 (314) T ss_dssp HHHHHHHHHHHHTTCCC-EEE-EGGGTTTSH--HHHHHH-----------------------HHHHHHSCHHHHHHHTTT T ss_pred HHHHHHHHHHHHCCCCC-CEE-ECCHHHHHH--HHHHHH-----------------------HHHHHHHHHHHHHHHHHH T ss_conf 88888999998347654-301-211544105--789999-----------------------998545454102222222 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 22221012351266633776663141467766764332047777875298414874135666687513668888640875 Q gi|254780573|r 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 (461) Q Consensus 180 ~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~ 259 (461) .+|... ..+-|+.. .| .-|+..+|-...|+--||.|=. ||++- + -+.+ . T Consensus 137 ----~~r~~~------~~~~g~f~--------YP------~lQaaD~l~~~~~~~~~G~DQ~-~~~~l--~-rdl~-~-- 185 (314) T 2zp1_A 137 ----IAREDE------NPKVAEVI--------YP------IMQVNTSHYLGVDVAVGGMEQR-KIHML--A-RELL-P-- 185 (314) T ss_dssp ----TSCCCS------SCCTHHHH--------HH------HHHHHHHHHHTCSEEEEEGGGH-HHHHH--H-HHHS-S-- T ss_pred ----HHCCCC------CCCCCEEE--------CC------CCHHHHHHHCCCCEEEECHHHH-HHHHH--H-HHHH-H-- T ss_conf ----220256------88764244--------36------4010024404784776518888-99998--6-7765-3-- Q ss_pred CCHHHEECCCEE-EEEEC-CCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 301210034325-76420-22332332140899850253345577799999998425 Q gi|254780573|r 260 KTANIWIHNGFL-NLEGR-KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 260 ~~a~yWlH~G~l-~i~ge-KMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) .+ ++=+|.-+| ..+|+ |||||.||.|.+.| +|+.+|--+.++ T Consensus 186 ~~-~~~~~~p~l~g~dG~~kmsks~~n~I~L~D------------~pe~i~~Ki~~a 229 (314) T 2zp1_A 186 KK-VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD------------SPEEIRAKIKKA 229 (314) T ss_dssp SC-CEEEEECCCBCTTSSSBCCTTTTCSCBTTC------------CHHHHHHHHHHS T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEC------------CHHHHHHHHHEE T ss_conf 02-321257776798874566678888777407------------878998865431 No 40 >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Probab=95.98 E-value=0.013 Score=37.58 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=50.7 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCC-CCCCCCHHHHHCCC Q ss_conf 7777875298414874135666687513--668888640875301210034325-7642022332-33214089985025 Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKS-NGNFITINELLETK 295 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKS-lGN~iti~dlL~~~ 295 (461) .-|+..+|-...||.-||.|-.. |+|- ++|. -.....+ +-+|.-++ ..+|.||||| .+|.|.+.| T Consensus 168 ~LQaaDil~~~a~iv~~G~DQ~~-~i~l~rdla~--k~~~~~~---~~l~~pll~~l~G~k~s~s~~~s~I~l~D----- 236 (372) T 1n3l_A 168 GLQALDEEYLKVDAQFGGIDQRK-IFTFAEKYLP--ALGYSKR---VHLMNPMVPGLTGSKMSSSEEESKIDLLD----- 236 (372) T ss_dssp HHHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGG--GGTCCCC---EEEEECCCCCSSCC-------CCSCBTTC----- T ss_pred HHHHHHHHHCCCCEEEECHHHHH-HHHHHHHHHH--HHCCCCC---EEEECCCCCCHHHHCCCCCCCCCEEECCC----- T ss_conf 78765665326777884247889-9999999999--8189987---48822765531222013699888765238----- Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 3345577799999998425664321145 Q gi|254780573|r 296 KFGGRSWPAPVIRLAMLMTHYREPIDFT 323 (461) Q Consensus 296 ~~~~k~y~p~viR~~lLsshYRspLdfS 323 (461) +|+.++-=+..+ |-.|-+-+ T Consensus 237 -------~~~~i~~KI~~a-~td~~~~~ 256 (372) T 1n3l_A 237 -------RKEDVKKKLKKA-FCEPGNVE 256 (372) T ss_dssp -------CHHHHHHHHHTC-CCCTTCCS T ss_pred -------CHHHHHHHHHHC-CCCCCCCC T ss_conf -------999999999970-08988888 No 41 >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Probab=95.14 E-value=0.091 Score=31.46 Aligned_cols=205 Identities=18% Similarity=0.115 Sum_probs=101.9 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 9996167888844411127999999999999970-799845799605523388899998708986448848999999999 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQ 105 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~-~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~ 105 (461) ++|+ |-.+-+.+||||.-.. |+.|++.. ++ .|.+ =|+|..= + + .+.++.++ ++++. T Consensus 17 ~v~t-G~~PSG~~HlG~~~g~-----i~~~~~lq~~~--~~~~--~iAD~ha-l---------t--~~~~~~~~-~~~~~ 73 (346) T 3n9i_A 17 IVFS-GAQPSGELTIGNYMGA-----LRQWVQMQDDY--DCIY--CIVDLHA-I---------T--ARQDPALL-RKRTL 73 (346) T ss_dssp EEEE-EECSCSCCBHHHHHHT-----HHHHHTTTTTS--EEEE--EECHHHH-T---------T--SCCCHHHH-HHHHH T ss_pred EEEE-CCCCCCCCHHHHHHHH-----HHHHHHHHCCC--CEEE--EEECHHH-H---------C--CCCCHHHH-HHHHH T ss_conf 8896-6588872558887999-----99999986789--8799--9977888-5---------5--79999999-99999 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 99998776268541000123567777899999874114320128928752200245432246754666643210222210 Q gi|254780573|r 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 (461) Q Consensus 106 ~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K 185 (461) ++..|+-++++.|-....-.-..+++.-++.-. ++.+...|.|.+..--+... . ... T Consensus 74 e~~~~~lA~G~dp~k~~i~~qS~~~~~~el~~~-----------------l~~~~~~~~l~r~~~~k~~~----~--~~~ 130 (346) T 3n9i_A 74 DTLALYLACGIDPKKSTIFVQSHVPEHSQLSWA-----------------LNCYTYFGELSRMTQFKDKS----A--RYA 130 (346) T ss_dssp HHHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHH-----------------HHTTSBHHHHHTCHHHHHHH----H--HSG T ss_pred HHHHHHHHCCCCHHHCEEEECCCCHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH----C--CCC T ss_conf 999999986888445189977654569999999-----------------95013777887543332010----0--123 Q ss_pred CCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHHHHH-CCCCCCH Q ss_conf 1235126663377666314146776676433204777787529841487413566668751--366888864-0875301 Q gi|254780573|r 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE--NEIAQSCCA-DRIEKTA 262 (461) Q Consensus 186 ~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHE--NEiAQs~a~-~~~~~~a 262 (461) .+ ..-|... .| .-|+..+|-...|+--+|+|=. |||| .|||...-. ++ +.|. T Consensus 131 ~~---------~~~g~~~--------YP------~lqaaDIl~~~~~~vpvG~DQ~-~h~eltRdia~kfn~~y~-~~~~ 185 (346) T 3n9i_A 131 EN---------INAGLFD--------YP------VLMAADILLYQTNQVPVGEDQK-QHLELSRDIASRFNNLYG-DIFK 185 (346) T ss_dssp GG---------CBHHHHH--------HH------HHHHHHHHTTTCSEECCCGGGH-HHHHHHHHHHHHHHHHHS-SCSC T ss_pred CC---------CCCCCCC--------CC------HHHCCCCHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHCC-CCCC T ss_conf 46---------7720256--------85------6651331310887345637569-999999999999886558-8325 Q ss_pred --HHEECC--CE-E--EEEECCCCCC---CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf --210034--32-5--7642022332---332140899850253345577799999998425 Q gi|254780573|r 263 --NIWIHN--GF-L--NLEGRKMSKS---NGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 263 --~yWlH~--G~-l--~i~geKMSKS---lGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) ..-++. +. . .-.+.||||| .||.|.+.| +|+.++=-+..+ T Consensus 186 ~P~~~~~~~~~~~~~l~~~~~kmskSs~s~~n~I~l~d------------~~~~I~kKI~ka 235 (346) T 3n9i_A 186 IPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE------------DPKSVVKKIKRA 235 (346) T ss_dssp CCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS------------CHHHHHHHHHTC T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECC------------CHHHHHHHHHEE T ss_conf 67656575544401578865556655456642788367------------877888876520 No 42 >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} Probab=94.57 E-value=0.012 Score=37.85 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=45.0 Q ss_pred CEEEEEECCCCCCCCCHH-HHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHH Q ss_conf 414874135666687513-668888640875301210034325-764202233233214089985025334557779999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHEN-EIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVI 307 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHEN-EiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~vi 307 (461) ..||..||+|=.|-|--- |.++. ..+.++ +=+|+-+| ..+|+|||||.||-|.+.+- .-+|..+ T Consensus 210 ~~diqiGG~DQ~~ni~~grdl~~~--~~~~~~---~~lt~pLL~~~~G~KmgKS~~nai~L~~~---------~tSp~e~ 275 (356) T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINK--LTGEDV---FGITVPLITSTTGAKLGKSAGNAVWLNRD---------KTSPFEL 275 (356) T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHH--HSSCCC---EEEEECCCC-------------CCBSSTT---------TSCHHHH T ss_pred CCCEEEECCCCHHHHHHHHHHHHH--HCCCCC---CEEEECCCCCCCCCCCCCCCCCCCCCCCC---------CCCHHHH T ss_conf 985154034608899989999998--269876---07860575678897032245786521345---------5886999 Q ss_pred HHHHHC Q ss_conf 999842 Q gi|254780573|r 308 RLAMLM 313 (461) Q Consensus 308 R~~lLs 313 (461) .=++++ T Consensus 276 yqk~~~ 281 (356) T 2pid_A 276 YQFFVR 281 (356) T ss_dssp HHHHHT T ss_pred HHHHHC T ss_conf 999946 No 43 >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Probab=93.30 E-value=0.034 Score=34.50 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=44.6 Q ss_pred CEEEEEECCCCCCCCCHH-HHHHHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHH Q ss_conf 414874135666687513-6688886408753012100343257-64202233233214089985025334557779999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHEN-EIAQSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVI 307 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHEN-EiAQs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~vi 307 (461) ..+|..||+|=.|=+--- |++.. ..+.+++ =||.-+|+ .+|+|||||.||.|.+.... -+|..+ T Consensus 191 ~~~iqiGGsDQ~~ni~~Grdl~~~--~~~~~~~---~it~pLl~~~~G~K~gKS~~n~i~l~~~~---------tsp~~~ 256 (322) T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRR--LHQNQVF---GLTVPLITKADGTKFGKTEGGAVWLDPKK---------TSPYKF 256 (322) T ss_dssp CEEEEEECTTCHHHHHHHHHHHHH--HHCCCCE---EEECCCCBCTTSCBTTEETTEECBSSTTT---------SCHHHH T ss_pred CCEEEECCCCHHHHHHHHHHHHHH--HCCCCCE---EEEECCCCCCCHHHHHHHHCCCCCCCCCC---------CCHHHH T ss_conf 831565365237788879999998--3699828---99821653010147888733765322234---------586999 Q ss_pred HHHHHC Q ss_conf 999842 Q gi|254780573|r 308 RLAMLM 313 (461) Q Consensus 308 R~~lLs 313 (461) .=++++ T Consensus 257 ~~k~~n 262 (322) T 2yxn_A 257 YQFWIN 262 (322) T ss_dssp HHHHHT T ss_pred HHHHHC T ss_conf 998817 No 44 >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129} Probab=93.25 E-value=0.068 Score=32.33 Aligned_cols=208 Identities=17% Similarity=0.115 Sum_probs=95.5 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 61678888444111279999999999999707998457996055233888999987089864488489999999999999 Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 (461) Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~ 109 (461) +-|-.+-+.+||||.-+ +.-..++|.. +++ |.+ =|+|.. .++ ...++.++ +.++.+... T Consensus 8 ~tG~~PSG~~HLGh~i~---~i~~~~~lQ~-~~~--~~i--~IAD~h-a~~-----------~~~~~~~~-~~~~~~~~~ 66 (348) T 2yy5_A 8 LTGIQASGKQHLGNYLG---VMQSLIELQE-QCQ--LFV--FVADLH-SIT-----------VDFQPQAL-KQNNFDLVR 66 (348) T ss_dssp EEEECCCTTCBHHHHHH---TGGGHHHHHH-HSE--EEE--EECHHH-HTT-----------SCCCHHHH-HHHHHHHHH T ss_pred EECCCCCCCCHHHHHHH---HHHHHHHHHC-CCC--EEE--EEECHH-HHH-----------CCCCHHHH-HHHHHHHHH T ss_conf 66837897056776999---9999999966-698--899--973187-761-----------69989999-999999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 87762685410001235677778999998741143201289287522002454322467546666432102222101235 Q gi|254780573|r 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 (461) Q Consensus 110 d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~ 189 (461) ++.++++.+....--.-..+++.-++.--+. .+...+.|++..--....+. ....+. T Consensus 67 ~~la~g~dp~~~~~~~qs~~~~~~el~~~~~-----------------~~~~~~~l~~~~~~~~~~~~------~~~~~~ 123 (348) T 2yy5_A 67 TLLAVGLDPQKACLFLQSDLLEHSMMGYLMM-----------------VQSNLGELQRMTQFKAKKAE------QTRNPN 123 (348) T ss_dssp HHHHTTCCTTTEEEEEGGGCHHHHHHHHHHH-----------------HHSBHHHHHHCHHHHTTC-------------- T ss_pred HHHHHCCCCCCCEEEECCCCCCHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHH------HCCCCC T ss_conf 9998178855527973033500688999983-----------------32788999998876666643------002445 Q ss_pred CEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHH-HHCCCCCCHHHEE Q ss_conf 1266633776663141467766764332047777875298414874135666687513--668888-6408753012100 Q gi|254780573|r 190 DFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSC-CADRIEKTANIWI 266 (461) Q Consensus 190 DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~-a~~~~~~~a~yWl 266 (461) +. ...+.|...++ .-|+...|-...|+--||+|-+ ||||- |+|+-. -.++. . ..+ T Consensus 124 -~~--~~~~~g~~~YP--------------~lQaaDil~~~~~~vp~G~DQ~-~~~~ltRdia~kfn~~~~~-~---~~~ 181 (348) T 2yy5_A 124 -GT--LNIPTGLLTYP--------------ALMAGDILLYQPDIVPVGNDQK-QHLELTRDLAQRIQKKFKL-K---LRL 181 (348) T ss_dssp ------CCBTHHHHHH--------------HHHHHHHHTTCCSEEECCGGGH-HHHHHHHHHHHHHHHHHCC-C---CCC T ss_pred -CC--CCCCHHHCCCH--------------HHHHCCHHHHCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCC-C---CCC T ss_conf -55--56432410481--------------6752022641788787872189-9999999998750234454-4---567 Q ss_pred CCCE----------EEEEECCCCCCCCC---CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC Q ss_conf 3432----------57642022332332---1408998502533455777999999984256 Q gi|254780573|r 267 HNGF----------LNLEGRKMSKSNGN---FITINELLETKKFGGRSWPAPVIRLAMLMTH 315 (461) Q Consensus 267 H~G~----------l~i~geKMSKSlGN---~iti~dlL~~~~~~~k~y~p~viR~~lLssh 315 (461) +.-+ +...+.|||||.+| .|.+.| +|+.+|==+..+. T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~kS~~~~~s~I~l~D------------~~~~I~kKI~ka~ 231 (348) T 2yy5_A 182 PQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD------------PKEVVVKKIRQAT 231 (348) T ss_dssp CEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC------------CHHHHHHHHHTCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC------------CHHHHHHHHHHCC T ss_conf 7321233200135676887677766789886688438------------7888999887356 No 45 >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Probab=91.75 E-value=0.74 Score=24.94 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=43.6 Q ss_pred CEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 8479996-167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) ....+|+ .+|| ..+||||. |.+..++..+...|.. | +.=|+|.. +.+.+ .+.+ + +-.+. T Consensus 72 ~~~~vytG~~PS--G~lHLGh~---i~~~~~~~~q~~~~~~--~--~i~iaD~~-~~~~~---~~~~------~-~~~~~ 131 (392) T 3jxe_A 72 RGFFLYTGRGPS--GPMHIGHI---IPFFATKWLQEKFGVN--L--YIQITDDE-KFLFK---ENLT------F-DDTKR 131 (392) T ss_dssp CCCEEEEEECCS--SCCBHHHH---HHHHHHHHHHHHHCCE--E--EEEECHHH-HHHHC---SSCC------H-HHHHH T ss_pred CCCEEEECCCCC--CHHHHHHH---HHHHHHHHHHHCCCCC--E--EEEEEEHH-HHHCC---CCCC------H-HHHHH T ss_conf 980899686898--37489989---9999999999716986--6--99996127-76525---7999------9-99999 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999998776268541 Q gi|254780573|r 103 NTQQFVKDTTRLACLAP 119 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p 119 (461) +..++..++-++++.|- T Consensus 132 ~~~e~~~~~lA~GlDp~ 148 (392) T 3jxe_A 132 WAYDNILDIIAVGFDPD 148 (392) T ss_dssp HHHHHHHHHHTTCCCTT T ss_pred HHHHHHHHHHHCCCCCC T ss_conf 99999999998089920 No 46 >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Probab=91.24 E-value=0.83 Score=24.58 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=49.9 Q ss_pred EEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 479996-1678888444111279999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 25 NIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 25 ~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) .+.+|+ .+|| -++.||||+-+++ .+++..+..+.. | +.-|+|.. +...+ .+. ++. -.+.+ T Consensus 74 ~~~vytG~~PS-g~~lHlGh~v~~~---~~~~~q~~~~~~--v--~i~iaD~~-~~~~~---~~~------~~~-e~~~~ 134 (393) T 3hv0_A 74 LFYLYTGRGPS-SESLHVGHLVPFL---FTKYLQDTFKVP--L--VIQLTDDE-KFIFK---SNL------TLE-ETHNY 134 (393) T ss_dssp CCEEEEEECCS-SSSCBSTTHHHHH---HHHHHHHHHCCC--E--EEEECHHH-HHHHC---TTC------CHH-HHHHH T ss_pred CEEEEECCCCC-CCCCHHHHHHHHH---HHHHHHHCCCCC--E--EEEEECHH-HHCCC---CCC------CHH-HHHHH T ss_conf 83899570689-8433499999999---999998766987--7--99984566-52056---789------999-99999 Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHH Q ss_conf 99999987762685410-00123567777899 Q gi|254780573|r 104 TQQFVKDTTRLACLAPT-HQPRATNHIPQMIY 134 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~-~~pr~t~~i~~~i~ 134 (461) ..++..++-++++.|-. ..-.-++++.++-. T Consensus 135 ~~~~~~~~iA~G~dp~kt~i~~~s~~~~~~~~ 166 (393) T 3hv0_A 135 AYENMKDIIACGFDPELTFIFTNLEYIAELYP 166 (393) T ss_dssp HHHHHHHHHTTCCCTTTEEEEEHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH T ss_conf 99999999971889764399978489888999 No 47 >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Probab=90.63 E-value=0.053 Score=33.11 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=35.7 Q ss_pred CEEEEEECCCCCCCCCH-HHHHHHHHHCCCCC------------CHHHEECCCEEE-EEECCCCCCCCCCCCHHHHH Q ss_conf 41487413566668751-36688886408753------------012100343257-64202233233214089985 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHE-NEIAQSCCADRIEK------------TANIWIHNGFLN-LEGRKMSKSNGNFITINELL 292 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHE-NEiAQs~a~~~~~~------------~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL 292 (461) ..||..||.|=.|..-- -|.+.........+ -.-|=|++-.|+ -+|+|||||.||.|.+.+-. T Consensus 232 ~~~lqiGGsDQ~gNi~~G~dlir~~~~~~~~~~~~~~~~~~~~~~~~~glT~PLLt~~dG~KmgKS~gnaIwLd~~~ 308 (392) T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQ 308 (392) T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTTT T ss_pred CCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCEEEEECCCEECCCCCHHHHHCCCCCCCCCCC T ss_conf 88705742430476776888999843346320010123332256640575215544798304665058975046776 No 48 >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Probab=89.43 E-value=1.2 Score=23.54 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=45.2 Q ss_pred CEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 8479996-167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) ..+.+|+ ++|| -++.||||.-+++. + |||...|... | +.-|+|. .+.+.+ ..+ +. -+++ T Consensus 154 kpf~vytG~~PS-g~sLHLGHli~~~~---~-k~lQ~~g~~~-v--~I~IaD~-ea~~~~----~~~------~e-e~~~ 213 (477) T 1r6t_A 154 KPFYLYTGRGPS-SEAMHVGHLIPFIF---T-KWLQDVFNVP-L--VIQMTDD-EKYLWK----DLT------LD-QAYG 213 (477) T ss_dssp CCEEEEEEECCC-TTCCBGGGHHHHHH---H-HHHHHHHTCC-E--EEEECHH-HHHHHS----SCC------HH-HHHH T ss_pred CCEEEEECCCCC-CCCCHHHHHHHHHH---H-HHHHHCCCCC-E--EEEECCH-HHHCCC----CCC------HH-HHHH T ss_conf 983899585799-85436999999999---9-9999806985-3--6884153-541378----999------99-9999 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 9999999877626854 Q gi|254780573|r 103 NTQQFVKDTTRLACLA 118 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~ 118 (461) +..++.+++-++++.+ T Consensus 214 ~~~e~i~~~iA~GfDp 229 (477) T 1r6t_A 214 DAVENAKDIIACGFDI 229 (477) T ss_dssp HHHHHHHHHHTTCCCT T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999818891 No 49 >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Probab=89.19 E-value=1.2 Score=23.42 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=46.2 Q ss_pred CEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 8479996-167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) ..+.+|+ .+|| -++.||||+-+++. + |||...|... | +.-|+|.. +.+.+ ..+ +. -+++ T Consensus 107 kpf~vytG~~PS-g~~lHLGH~i~~~~---~-k~lQ~~g~~~-v--~I~iaD~e-a~~~~----~~~------~e-e~~~ 166 (437) T 1r6u_A 107 KPFYLYTGRGPS-SEAMHVGHLIPFIF---T-KWLQDVFNVP-L--VIQMTDDE-KYLWK----DLT------LD-QAYG 166 (437) T ss_dssp CCEEEEEEECCC-SSCCBHHHHHHHHH---H-HHHHHHHTCC-E--EEEECHHH-HHHHS----SCC------HH-HHHH T ss_pred CCEEEEEEECCC-CCCCCHHHHHHHHH---H-HHHHHCCCCC-E--EEEEECHH-HHCCC----CCC------HH-HHHH T ss_conf 985899533789-87530999999999---9-9999706985-4--78861348-65158----999------99-9999 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 9999999877626854 Q gi|254780573|r 103 NTQQFVKDTTRLACLA 118 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~ 118 (461) +..++.+++-++++.+ T Consensus 167 ~~~e~~~~~iA~G~Dp 182 (437) T 1r6u_A 167 DAVENAKDIIACGFDI 182 (437) T ss_dssp HHHHHHHHHHTTTCCG T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999808895 No 50 >1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Probab=86.99 E-value=0.17 Score=29.41 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=39.5 Q ss_pred CHHHHHHHHHCC-------CCEEEEEECCCCCCCCCHHHHHHHH---HHCCCCCCHHHEECCCE-EEEEECCCCCCCCCC Q ss_conf 204777787529-------8414874135666687513668888---64087530121003432-576420223323321 Q gi|254780573|r 217 IECSAMSSHYLG-------KVFDIHGGGLDLIFPHHENEIAQSC---CADRIEKTANIWIHNGF-LNLEGRKMSKSNGNF 285 (461) Q Consensus 217 iECsam~~~~lg-------~~~DIH~GG~DL~FPHHENEiAQs~---a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~ 285 (461) .|.+-+.++-.. -..||..||.|=.| |-.+=-+ -.++..+. |=|-.-. .+-+|+|||||.||. T Consensus 166 ~EF~YpllQayDf~~L~~~~~~~iqiGGsDQ~g----Ni~~G~~Li~~~~~~~~~--~glt~pLl~~~~G~KmgKS~~n~ 239 (420) T 1jil_A 166 TEFTYTILQAIDFGHLNRELNCKIQVGGSDQWG----NITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGA 239 (420) T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHH----HHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSB T ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCEE----HHHHHHHHHHHHCCCCCE--EEEEEECCCCCCCCCHHHCCCCC T ss_conf 014115566767999887609228995030001----266658888754377753--99984003776665702237984 Q ss_pred CCHHH Q ss_conf 40899 Q gi|254780573|r 286 ITINE 290 (461) Q Consensus 286 iti~d 290 (461) |.+.. T Consensus 240 iwL~~ 244 (420) T 1jil_A 240 VWLDA 244 (420) T ss_dssp CBSST T ss_pred EEECC T ss_conf 35025 No 51 >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Probab=80.42 E-value=1.3 Score=23.27 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=33.2 Q ss_pred EEEEEECCCCCCCCCHH-HHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCC-CCCHH Q ss_conf 14874135666687513-668888640875301210034325-7642022332332-14089 Q gi|254780573|r 231 FDIHGGGLDLIFPHHEN-EIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGN-FITIN 289 (461) Q Consensus 231 ~DIH~GG~DL~FPHHEN-EiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN-~iti~ 289 (461) .||..||.|=.|=.--- |..+ . ..+.+++ =|..-.| ..+|+|||||.|| .+.+. T Consensus 188 ~dvqiGGsDQ~gNi~~G~~l~~-~-~~~~~~~---~lT~PLL~~~dG~K~gks~~~~~iwld 244 (432) T 2jan_A 188 CTLQIGGADQWGNIIAGVRLVR-Q-KLGATVH---ALTVPLVTAADGTKFGKSTGGGSLWLD 244 (432) T ss_dssp CCEEEECSTTHHHHHHHHHHHH-H-HHCCCCE---EEECCCCBCTTSCBTTBCSSSCBCBSS T ss_pred CEEEEEEHHHHHHHHHHHHHHH-H-HCCCCCE---EEEECCCCCCCCCCCCCCCCCCCEEEC T ss_conf 6279974778999997688998-7-4787526---886325227987832341368742423 No 52 >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica} Probab=77.64 E-value=3.6 Score=20.04 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=95.3 Q ss_pred EEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 479996-1678888444111279999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 25 NIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 25 ~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) .+.+|+ ++|| ..+||||.-++. .++++....+. .| +.-|+| +.+.+.+ ..+ . +-++++ T Consensus 82 ~~~vytG~~PS--G~lHLGh~i~~~---~~k~lQ~~~~~--~v--~I~iaD-~~a~~~~----~~~------~-ee~~~~ 140 (386) T 3hzr_A 82 PTFIFIQKYPQ--KEVALEEYITLE---FARYLQDAFNI--QV--IIQILD-DIKVLNR----EAT------I-NEASKM 140 (386) T ss_dssp CEEEEEEECCC--SSCBGGGHHHHH---HHHHHHHHHCC--EE--EEEECH-HHHHHTT----SCC------H-HHHHHH T ss_pred CEEEEECCCCC--CHHHHHHHHHHH---HHHHHHHCCCC--EE--EEEECC-HHHHCCC----CCC------H-HHHHHH T ss_conf 84899486887--370898999999---99999976797--59--999744-7872478----899------9-999999 Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 9999998776268541-000123567777899999874114320128928752200245432246754666643210222 Q gi|254780573|r 104 TQQFVKDTTRLACLAP-THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p-~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~ 182 (461) ..++.+++-++++.|- +..-.-|+++.++-..+-. +.+-.. |..+.+ +. T Consensus 141 ~~e~~~~~lA~G~DpeKt~i~~qs~~~~~~~~~~~~-l~k~~t----------------~~~~k~----------~~--- 190 (386) T 3hzr_A 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISL-VEKATA----------------YNVVQP----------FF--- 190 (386) T ss_dssp HHHHHHHHHHTCCCGGGEEEEEHHHHHHHHHHHHHH-HHHHCB----------------HHHHTT----------TS--- T ss_pred HHHHHHHHHHHCCCCCCEEEEEECHHCHHHHHHHHH-HHCCCC----------------CCHHHH----------HH--- T ss_conf 999999999958894722899825200065899999-958735----------------052546----------51--- Q ss_pred CCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEE---------EEEECCCCCCCCCHH--HHHH Q ss_conf 21012351266633776663141467766764332047777875298414---------874135666687513--6688 Q gi|254780573|r 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD---------IHGGGLDLIFPHHEN--EIAQ 251 (461) Q Consensus 183 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~D---------IH~GG~DL~FPHHEN--EiAQ 251 (461) ..+.+ ...|+..++ +.|+...|-.++| +--+|+|-.. |++- ++|+ T Consensus 191 ~~~~~---------~n~g~~~YP--------------~lQaaDil~~~~~~~~g~~~~~lVPvG~DQ~~-~~~ltRdia~ 246 (386) T 3hzr_A 191 NFEYS---------DNIGKLASP--------------SIMTASMFSQSYSHFFSSPARCLVLDSIKNVQ-FHSIIDQIAT 246 (386) T ss_dssp CCCSS---------SBHHHHHHH--------------HHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHH-HHHHHHHHHH T ss_pred CCCCC---------CCCCCCCCC--------------HHHHHHHHHCCCHHHHCCCCCEEECCCCCHHH-HHHHHHHHHH T ss_conf 67666---------777520460--------------98888887606805417875303057734599-9999999998 Q ss_pred HHHHCCCCCCHHHEECCCEEE-EEE-CCCCCCC-CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC Q ss_conf 886408753012100343257-642-0223323-3214089985025334557779999999842 Q gi|254780573|r 252 SCCADRIEKTANIWIHNGFLN-LEG-RKMSKSN-GNFITINELLETKKFGGRSWPAPVIRLAMLM 313 (461) Q Consensus 252 s~a~~~~~~~a~yWlH~G~l~-i~g-eKMSKSl-GN~iti~dlL~~~~~~~k~y~p~viR~~lLs 313 (461) - ....+|. =+|+.++. ++| .|||||. +|.|.+.| +|+.++--+.+ T Consensus 247 r--~~~~~p~---~i~~~~lpgL~G~~KMSsS~~~s~I~L~D------------~p~~I~kKI~k 294 (386) T 3hzr_A 247 T--LNFIQPT---VLFHKMVPLLSGVTKFDIPSDHNSILLSD------------NAKQVERKINK 294 (386) T ss_dssp H--HTCCCCE---EEEECCCCCTTCTTCCCCCCTTTSCBTTC------------CHHHHHHHHHH T ss_pred H--CCCCCCE---EECCCCCCCCCCCCCCCCCCCCCEEEEEC------------CHHHHHHHHHE T ss_conf 6--3568870---21255445678876545689986257507------------98999887452 No 53 >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Probab=77.48 E-value=0.63 Score=25.44 Aligned_cols=68 Identities=21% Similarity=0.142 Sum_probs=39.5 Q ss_pred CHHHHHHHHH-----C--CCCEEEEEECCCCCCCCCHHHHHHHH---HHCCCCCCHHHEECCCEE-EEEECCCCCCCCCC Q ss_conf 2047777875-----2--98414874135666687513668888---640875301210034325-76420223323321 Q gi|254780573|r 217 IECSAMSSHY-----L--GKVFDIHGGGLDLIFPHHENEIAQSC---CADRIEKTANIWIHNGFL-NLEGRKMSKSNGNF 285 (461) Q Consensus 217 iECsam~~~~-----l--g~~~DIH~GG~DL~FPHHENEiAQs~---a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~ 285 (461) .|++-|.++- | ....||..||.|=.| |-.+=-+ -..+..+ + |=|..-.| .-+|+|||||.||. T Consensus 165 ~Ef~Y~llQayD~~~L~~~~~~~iqiGGsDQ~g----Ni~~G~dLir~~~g~~~-~-~glT~PLL~~~dG~K~gKS~~n~ 238 (419) T 2ts1_A 165 TEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWG----NITAGLELIRKTKGEAR-A-FGLTIPLVTKADGTKFGKTESGT 238 (419) T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHH----HHHHHHHHHHHHHC--C-C-EEEEECCCCCTTSCCTTCCSSCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH----HHHHHHHHHHHHCCCCC-C-EEEEECCCCCCCCCCCCCCCCCC T ss_conf 551102120001567776358406883305678----99888999986359876-2-48841310388877503117998 Q ss_pred CCHHH Q ss_conf 40899 Q gi|254780573|r 286 ITINE 290 (461) Q Consensus 286 iti~d 290 (461) |.+.+ T Consensus 239 iwl~~ 243 (419) T 2ts1_A 239 IWLDK 243 (419) T ss_dssp CBSST T ss_pred CCCCC T ss_conf 73445 No 54 >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Probab=76.65 E-value=3.8 Score=19.86 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=44.0 Q ss_pred CEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 8479996-167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) ..+.+|+ .+|| -+..||||.-+++. ++. +...+.. .| +.-|+|. .+.+. ..+.+ + +-.+. T Consensus 101 ~~f~iytG~~PS-g~~lHLGh~l~~~~---~k~-~Q~~~~~-~v--~i~iaD~-~a~~~---~~~~s------~-e~i~~ 161 (432) T 2ip1_A 101 KPFFLYTGRGPS-SDSMHLGHMIPFVF---TKW-LQEVFDV-PL--VIELTDD-EKFLF---KHKLT------I-NDVKN 161 (432) T ss_dssp CCCEEEEEECCC-SSCCBGGGHHHHHH---HHH-HHHHHTC-CE--EEEECHH-HHHHH---CTTCC------H-HHHHH T ss_pred CCEEEEECCCCC-CCCCHHHHHHHHHH---HHH-HHHCCCC-CE--EEEECCH-HHHCC---CCCCC------H-HHHHH T ss_conf 985999472799-96214999999999---999-9976798-50--5897234-76364---77899------9-99999 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999998776268541 Q gi|254780573|r 103 NTQQFVKDTTRLACLAP 119 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p 119 (461) +..++..++-++++.|- T Consensus 162 ~~~e~~~~ilA~G~Dp~ 178 (432) T 2ip1_A 162 FARENAKDIIAVGFDPK 178 (432) T ss_dssp HHHHHHHHHHTTTCCGG T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 99999999998085934 No 55 >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Probab=69.42 E-value=5.5 Score=18.69 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=45.2 Q ss_pred CEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 8479996-167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) ....+|+ .+|| -+.+||||.-+++ . .+||...+. +..+.-|+| |-+.+. ..+. ++. -.+. T Consensus 90 ~pf~v~tG~~Ps-SG~~HLGh~~~~~---~-~~~lQd~~~---~~~~i~iaD-~ea~~~---~~~~------~~e-~~~~ 150 (451) T 3foc_A 90 HPIYIYTGRGPS-SGALHLGHLLPFI---F-TKYLQDAFK---CYVVIQITD-DEKFLR---NRSL------SYA-EVDS 150 (451) T ss_dssp CCEEEEEEECCC-SSCCBHHHHHHHH---H-HHHHHHHHT---CEEEEEECH-HHHHHH---CTTC------CHH-HHHH T ss_pred CCEEEEECCCCC-CCCCCHHHHHHHH---H-HHHHHHCCC---CCEEEEECC-HHHHCC---CCCC------CHH-HHHH T ss_conf 984999798899-8975399999999---9-999987579---978999724-788404---8899------999-9999 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999998776268541 Q gi|254780573|r 103 NTQQFVKDTTRLACLAP 119 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p 119 (461) +..++..++-++++.|- T Consensus 151 ~~~e~~~~~iA~G~Dp~ 167 (451) T 3foc_A 151 YTRENIKDIIACGFDPD 167 (451) T ss_dssp HHHHHHHHHHTTTCCGG T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 99999999999577902 No 56 >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8} Probab=63.37 E-value=1.2 Score=23.55 Aligned_cols=82 Identities=28% Similarity=0.175 Sum_probs=48.1 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHH-CCC---CCCHHHEECCCEE-EEEE-CCCCCCCCCCCCHHHH Q ss_conf 7777875298414874135666687513--66888864-087---5301210034325-7642-0223323321408998 Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCA-DRI---EKTANIWIHNGFL-NLEG-RKMSKSNGNFITINEL 291 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~-~~~---~~~a~yWlH~G~l-~i~g-eKMSKSlGN~iti~dl 291 (461) .-|+...|-...|+--||.|=+ ||||- ++|+..-. ++. .+-.-.=.+...| ..+| .|||||.+|.|.+.| T Consensus 131 ~lQaaDil~~~~d~vpvG~DQ~-~~~~l~Rdia~k~n~~~~~~~~~~~~~~~~~~~~l~gl~g~~kmSks~~~~I~l~D- 208 (337) T 2el7_A 131 VLQAADILIYKADTVPVGEDQV-QHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE- 208 (337) T ss_dssp HHHHHHHHHTTCCEEECCGGGC-HHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS- T ss_pred HHHCCCHHHHCCCEEECCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC- T ss_conf 8762470542498623371168-99997389999999872425687620002222203277875422577777530137- Q ss_pred HCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 50253345577799999998425 Q gi|254780573|r 292 LETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 292 L~~~~~~~k~y~p~viR~~lLss 314 (461) +|+.++=-+.++ T Consensus 209 -----------~~~~i~kKI~ka 220 (337) T 2el7_A 209 -----------PEESIWQKIQHL 220 (337) T ss_dssp -----------CHHHHHHHHHTC T ss_pred -----------CCHHHHHHHHCC T ss_conf -----------805664243107 No 57 >1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A Probab=62.77 E-value=6.2 Score=18.34 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=28.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 467899999999999998817989999999999988 Q gi|254780573|r 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 (461) Q Consensus 403 ~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~ 438 (461) +.+...|..|-.+=..|-++-||++|=++||++.++ T Consensus 20 ~el~k~I~~Le~~M~~aA~~ldFE~AA~~RD~I~~L 55 (63) T 1e52_A 20 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 55 (63) T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 999999999999999999968899999999999999 No 58 >3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Probab=62.62 E-value=7.4 Score=17.80 Aligned_cols=15 Identities=7% Similarity=-0.175 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999970799 Q gi|254780573|r 49 VFDVLYRLLRYYYGE 63 (461) Q Consensus 49 ~~D~l~R~L~~~~~~ 63 (461) +.+.|...|+.+|++ T Consensus 36 T~~~i~~~L~~~G~~ 50 (445) T 3io1_A 36 TASKVADILDGLGYQ 50 (445) T ss_dssp HHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHCCCE T ss_conf 999999999977996 No 59 >1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Probab=60.78 E-value=7.9 Score=17.58 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=25.9 Q ss_pred ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 04798479996167888844411127999999999999970799 Q gi|254780573|r 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 (461) Q Consensus 20 p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~ 63 (461) |-.+.+|.+| + .-.|++|+||.. ++.+.++..+.. T Consensus 3 ~~~~kkIaif-g--GSFdP~H~GH~~------ii~~a~~~~~~~ 37 (194) T 1kam_A 3 PGGSKKIGIF-G--GTFDPPHNGHLL------MANEVLYQAGLD 37 (194) T ss_dssp ---CCEEEEE-E--ECCSSCCHHHHH------HHHHHHHHTTCS T ss_pred CCCCCEEEEE-C--CCCCCCCHHHHH------HHHHHHHHCCCC T ss_conf 8999779995-6--475848799999------999999985997 No 60 >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Probab=59.43 E-value=0.33 Score=27.41 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=37.2 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEEEECCC-CCCCCCHHHHHHHH Q ss_conf 7667643320477778752984148741356-66687513668888 Q gi|254780573|r 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLD-LIFPHHENEIAQSC 253 (461) Q Consensus 209 G~GRPGWHiECsam~~~~lg~~~DIH~GG~D-L~FPHHENEiAQs~ 253 (461) ++++|+|+++|..+..+.+..-||-..|..- +-||+++++..+.. T Consensus 218 ~r~~~~~~~~~~~~~~~v~~~Wfds~~~~~~~~~~~~~~~~~~~~~ 263 (524) T 2x1l_A 218 SRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRY 263 (524) T ss_dssp EESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCHHHHHC T ss_conf 6777888999999756333331010023113368886575767724 No 61 >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYB; 2.2A {Acanthamoeba polyphaga mimivirus} Probab=57.34 E-value=9 Score=17.18 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=46.4 Q ss_pred EEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 479996-1678888444111279999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 25 NIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 25 ~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) .+++|+ +.|| ..+||||.-..+. .+ +.+...|+. |.+ =|.|+...+-.. ...++. -.+.+ T Consensus 40 ~~~vy~G~~PT--G~lHLG~~l~~i~--~~-~~~q~~g~~--~~i--liaD~~a~~~~~---------~~~~~~-~i~~~ 100 (348) T 2j5b_A 40 IFTAYNGFEPS--GRIHIAQALITVM--NT-NNMIECGGQ--MII--YIADWFAKMNLK---------MNGDIN-KIREL 100 (348) T ss_dssp CEEEEEEECCC--SSCBHHHHHHHHH--HH-HHHHHTTEE--EEE--EECHHHHHHTTG---------GGGCHH-HHHHH T ss_pred CCEEEEEECCC--CCCCHHHHHHHHH--HH-HHHHHCCCC--EEE--EEECHHHHHCCC---------CCCCHH-HHHHH T ss_conf 97799755888--7555176899999--99-999866997--699--985709986887---------576599-99999 Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHH Q ss_conf 999999877626854100-0123567 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTH-QPRATNH 128 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~-~pr~t~~ 128 (461) ...+..++.++++.+... .-.-|+. T Consensus 101 ~~~~~~~~~A~G~dp~k~~~~~qs~~ 126 (348) T 2j5b_A 101 GRYFIEVFKACGINLDGTRFIWASEF 126 (348) T ss_dssp HHHHHHHHHHTTCCGGGEEEEEHHHH T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHH T ss_conf 99999999980899553089964787 No 62 >3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Probab=54.44 E-value=4.7 Score=19.21 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=29.2 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 8479996167888844411127999999999999970799845799605523388899998 Q gi|254780573|r 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 (461) Q Consensus 24 ~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~ 84 (461) ..+++|++| ++|..|.||++-+ +.. +.+|-. + +..|+ .|+-+.+-+ T Consensus 6 ~~~rV~~~G--~FDl~H~GH~~~l------~~A-k~~gd~--L--iVgv~--sD~~i~~~K 51 (341) T 3elb_A 6 RAVRVWCDG--CYDMVHYGHSNQL------RQA-RAMGDY--L--IVGVH--TDEEIAKHK 51 (341) T ss_dssp CCCEEEEEE--CCCSCCHHHHHHH------HHH-HHTSSE--E--EEEEC--CHHHHHHHS T ss_pred CCEEEEEEE--EECCCCHHHHHHH------HHH-HHCCCE--E--EEEEC--CHHHHHHCC T ss_conf 866999931--3577898999999------999-973998--9--99983--569998559 No 63 >3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Probab=53.15 E-value=5.3 Score=18.83 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=29.4 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 98479996167888844411127999999999999970799845799605523388899998 Q gi|254780573|r 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 (461) Q Consensus 23 ~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~ 84 (461) +..|++|+=| ++|..|.||++ +|.+. +.++-+ +..+..|+. |+.+.+-+ T Consensus 74 ~~~~rVyv~G--~FDLfH~GHi~------lL~~A-K~l~~g--d~LIVGV~s--De~i~k~K 122 (236) T 3hl4_A 74 ERPVRVYADG--IFDLFHSGHAR------ALMQA-KNLFPN--TYLIVGVCS--DELTHNFK 122 (236) T ss_dssp TSCEEEEEEE--CCTTCCHHHHH------HHHHH-HTSSSS--EEEEEEECC--HHHHHHHT T ss_pred CCCEEEEEEC--EECCCCHHHHH------HHHHH-HHCCCC--CEEEEEECC--HHHHHHCC T ss_conf 8995999945--15888989999------99999-605998--989999777--89998569 No 64 >1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Probab=49.57 E-value=12 Score=16.34 Aligned_cols=13 Identities=15% Similarity=-0.141 Sum_probs=5.0 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999997079 Q gi|254780573|r 50 FDVLYRLLRYYYG 62 (461) Q Consensus 50 ~D~l~R~L~~~~~ 62 (461) .+.|.++|+..|+ T Consensus 55 a~~l~~~L~~~G~ 67 (404) T 1ysj_A 55 TKKIRRWLEEEQI 67 (404) T ss_dssp HHHHHHHHHHTTC T ss_pred HHHHHHHHHHCCC T ss_conf 9999999997899 No 65 >2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Probab=46.17 E-value=13 Score=15.98 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=25.2 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 479996167888844411127999999999999970799845799605 Q gi|254780573|r 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNI 72 (461) Q Consensus 25 ~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~ni 72 (461) +|.+| || -.|++|.||.. ++.+.+...+.+ .|.++.+. T Consensus 3 kI~lf-gG--sFdP~h~GH~~------i~~~a~~~~~~d-~v~~~~s~ 40 (189) T 2h29_A 3 KIVLY-GG--QFNPIHTAHMI------VASEVFHELQPD-EFYFLPSF 40 (189) T ss_dssp EEEEE-EE--CCTTCCHHHHH------HHHHHHHHHCCS-EEEEEECS T ss_pred EEEEE-CC--CCCCCCHHHHH------HHHHHHHHHCCC-EEEEEECC T ss_conf 69996-32--76837799999------999999980999-59999705 No 66 >3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Probab=45.00 E-value=9.3 Score=17.09 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=8.2 Q ss_pred CCCCCCCHHHHHHHHHCCCCE Q ss_conf 676433204777787529841 Q gi|254780573|r 211 GRPGWHIECSAMSSHYLGKVF 231 (461) Q Consensus 211 GRPGWHiECsam~~~~lg~~~ 231 (461) |||-|.-.=+.+..+.-+... T Consensus 128 ~r~~~~~~~~~~~~~~~~~~~ 148 (186) T 3a1f_A 128 GRPNWDNEFKTIASQHPNTRI 148 (186) T ss_dssp SCCCHHHHHHHHHHHSTTCEE T ss_pred CCCCHHHHHHHHHHHCCCCCE T ss_conf 643499999999973879984 No 67 >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Probab=42.06 E-value=8.6 Score=17.31 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=7.1 Q ss_pred HHHHHHHHCCCEEE Q ss_conf 99999998897999 Q gi|254780573|r 430 YIRKQLESKGFILE 443 (461) Q Consensus 430 ~IRdeL~~~GI~ie 443 (461) .+++.|.++||..+ T Consensus 226 ~v~~~L~~~Gv~~~ 239 (257) T 2qdx_A 226 ETSAVLDSFGLKIS 239 (257) T ss_dssp HHHHHHHHTTCCBC T ss_pred HHHHHHHHCCCCCC T ss_conf 99999998699855 No 68 >1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59 Probab=36.58 E-value=14 Score=15.91 Aligned_cols=34 Identities=9% Similarity=0.210 Sum_probs=25.4 Q ss_pred HHHHHH-HHHHHHHHCCCCCCCCC---CEEECCHHCCC Q ss_conf 777789-99998741143201289---28752200245 Q gi|254780573|r 128 HIPQMI-YLIQNIILHGHAYEANN---EIIFDTSSIPN 161 (461) Q Consensus 128 ~i~~~i-~~i~~L~~~g~aY~~~g---~VyFdv~~~~~ 161 (461) -|..+- +.|+.|.++|..|.+++ +||+=+..+++ T Consensus 75 qIhsiFKeAi~~Lqe~G~VFqk~~~~d~lY~VT~~DKd 112 (120) T 1wj5_A 75 VAQRVFKNALQLLQEKGLVFQRDSGSDKLYYVTTKDKD 112 (120) T ss_dssp HHHHHHHHHHHHHHHHTSEECSSCSSSCCBEECSSSCC T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCC T ss_conf 99999999999999778688417987533886135545 No 69 >1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Probab=36.18 E-value=10 Score=16.73 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=25.3 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH Q ss_conf 9996167888844411127999999999999970799845799605523388899 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~ 81 (461) +++++| +.|..|.||.+ +|++.- .+| + ..+..+++ |..+. T Consensus 3 ~V~~~G--~FD~lH~GH~~------~l~~Ak-~~g-d---~liV~v~~--D~~~~ 42 (129) T 1coz_A 3 KVITYG--TFDLLHWGHIK------LLERAK-QLG-D---YLVVAIST--DEFNL 42 (129) T ss_dssp EEEEEE--CCCSCCHHHHH------HHHHHH-TTS-S---EEEEEEEC--HHHHH T ss_pred EEEEEE--EECCCCHHHHH------HHHHHH-HHC-C---EEEEEEEC--CCHHH T ss_conf 999934--54879989999------999999-729-9---89999706--71020 No 70 >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Probab=33.82 E-value=13 Score=15.97 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHCCCEEEEC Q ss_conf 9999999999889799986 Q gi|254780573|r 427 SADYIRKQLESKGFILEDY 445 (461) Q Consensus 427 ~AD~IRdeL~~~GI~ieDt 445 (461) .+++...+|.+.|=...|+ T Consensus 285 ~~~~f~~~l~~~gr~~~e~ 303 (304) T 2bmw_A 285 TWSDYQKDLKKAGRWHVET 303 (304) T ss_dssp CHHHHHHHHHHTTCEEEEE T ss_pred CHHHHHHHHHHCCCEEEEC T ss_conf 4999999898889807855 No 71 >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 1sm4_A* Probab=31.87 E-value=16 Score=15.39 Aligned_cols=20 Identities=10% Similarity=-0.124 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHCCCEEEEC Q ss_conf 99999999999889799986 Q gi|254780573|r 426 SSADYIRKQLESKGFILEDY 445 (461) Q Consensus 426 ~~AD~IRdeL~~~GI~ieDt 445 (461) ..|.++..+|.+.|=.++|+ T Consensus 294 ~~a~~~~~~l~~~~ry~~e~ 313 (314) T 1fnb_A 294 IDWIEYKRQLKKAEQWNVEV 313 (314) T ss_dssp CCHHHHHHHHHHTTCEEEEE T ss_pred CCHHHHHHHHHHCCCEEEEC T ss_conf 11999999888679779954 No 72 >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A Probab=31.23 E-value=22 Score=14.39 Aligned_cols=188 Identities=17% Similarity=0.075 Sum_probs=84.6 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 999616788884441112799999999999997-0799845799605523388899998708986448848999999999 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY-YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQ 105 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~-~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~ 105 (461) ++|+ |-.+-+.+||||.-.. +..++.. .+++ | +.=|+|..= +. + .....++ +.++. T Consensus 3 rv~t-G~~PSG~~HlG~~~g~-----i~~~~~lq~~~~--~--~i~iAD~ha-~~--------~---~~~~~~l-~~~~~ 59 (328) T 1i6k_A 3 TIFS-GIQPSGVITIGNYIGA-----LRQFVELQHEYN--C--YFCIVDQHA-IT--------V---WQDPHEL-RQNIR 59 (328) T ss_dssp EEEE-EECCCSCCBHHHHHHT-----HHHHHHHTTTSE--E--EEEECHHHH-TT--------S---CCCHHHH-HHHHH T ss_pred EEEE-CCCCCCCCHHHHHHHH-----HHHHHHHHCCCC--E--EEEEEHHHH-HC--------C---CCCHHHH-HHHHH T ss_conf 4685-7288870378889999-----999999857998--8--999630866-40--------6---7899999-99999 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 99998776268541000123567777899999874114320128928752200245432246754666643210222210 Q gi|254780573|r 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 (461) Q Consensus 106 ~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K 185 (461) ++..++-++++.|....--....+++.-++.- ++ +..-..+.+.+..--+...+ .. T Consensus 60 ~~~~~~~A~G~dp~k~~i~~qs~~~~~~~l~~-~~----------------~~~~~~~~~~r~~~~k~~~~-------~~ 115 (328) T 1i6k_A 60 RLAALYLAVGIDPTQATLFIQSEVPAHAQAAW-ML----------------QCIVYIGELERMTQFKEKSA-------GK 115 (328) T ss_dssp HHHHHHHHTTCCTTTEEEEEGGGCTHHHHHHH-HH----------------HHHSCHHHHHTCHHHHHHHT-------TC T ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH-HH----------------HHHHHHHHHHHHHHHHHHHC-------CC T ss_conf 99999998379987307985042355789999-99----------------85324788887641232212-------46 Q ss_pred CCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCHH Q ss_conf 12351266633776663141467766764332047777875298414874135666687513--6688886408753012 Q gi|254780573|r 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKTAN 263 (461) Q Consensus 186 ~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~a~ 263 (461) .+ .+-|...++ .-|+...|-...||--||.|=+ ||||= |+|...-..-...+.. T Consensus 116 ~~---------~~~g~l~YP--------------~lQaADIl~~~~d~vpvG~DQ~-~h~~ltRdia~k~n~~~~~~~~~ 171 (328) T 1i6k_A 116 EA---------VSAGLLTYP--------------PLMAADILLYNTDIVPVGEDQK-QHIELTRDLAERFNKRYGELFTI 171 (328) T ss_dssp SS---------CCHHHHTHH--------------HHHHHHHHTTTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCSCCCC T ss_pred CC---------CCCCCCCCC--------------HHHHHCCHHHCCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCC T ss_conf 78---------872323756--------------8762030631899154880268-99999999998746524875677 Q ss_pred --HEECC---CEE--EEEECCCCCCCCCC Q ss_conf --10034---325--76420223323321 Q gi|254780573|r 264 --IWIHN---GFL--NLEGRKMSKSNGNF 285 (461) Q Consensus 264 --yWlH~---G~l--~i~geKMSKSlGN~ 285 (461) .-+.. .+. .-.+.|||||.+|- T Consensus 172 ~~~~~~~~~~~~~~~~~~~~kmskS~~~~ 200 (328) T 1i6k_A 172 PEARIPKVGARIMSLVDPTKKMSKSDPNP 200 (328) T ss_dssp CEEECCSSSSSCBCSSCTTSBCCTTCSCG T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCC T ss_conf 31135654345652489876677678985 No 73 >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Probab=30.76 E-value=23 Score=14.33 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=5.6 Q ss_pred HHHCCCCCCHHHHHH Q ss_conf 762685410001235 Q gi|254780573|r 112 TRLACLAPTHQPRAT 126 (461) Q Consensus 112 ~~L~v~~p~~~pr~t 126 (461) ..++|.+ .+|+-+- T Consensus 86 ~~~gv~~-~~f~~~~ 99 (403) T 1cqx_A 86 ASLGVKP-EQYPIVG 99 (403) T ss_dssp HHHTCCG-GGHHHHH T ss_pred HHCCCCH-HHHHHHH T ss_conf 8749988-9999999 No 74 >1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.114.1.1 Probab=30.56 E-value=16 Score=15.44 Aligned_cols=39 Identities=10% Similarity=-0.059 Sum_probs=28.4 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9877626854100012356777789999987411432012 Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 (461) Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~ 148 (461) ..|+.+++.+.+..|-++ .+|.-+.-+-+|.++|+||.+ T Consensus 74 ~sl~~~~i~~~~L~~~v~-~Vpsgv~~l~~lQ~~Gy~yIk 112 (113) T 1l1s_A 74 NTLRASGMDGDDLLEGVD-VVSSGVGHIVRRQTEGWAYIR 112 (113) T ss_dssp HHHHHTTCCGGGBCTTCE-EESCHHHHHHHHHHTTCEEEC T ss_pred HHHHHCCCCHHHCCCCCE-EECHHHHHHHHHHHCCCEEEC T ss_conf 899883999678588889-962289999999988986858 No 75 >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} Probab=30.07 E-value=23 Score=14.25 Aligned_cols=14 Identities=0% Similarity=0.038 Sum_probs=6.1 Q ss_pred CCCCCCCCCEEECC Q ss_conf 43201289287522 Q gi|254780573|r 143 GHAYEANNEIIFDT 156 (461) Q Consensus 143 g~aY~~~g~VyFdv 156 (461) .+.|....-|++.+ T Consensus 36 ~~~f~pGQyv~l~i 49 (290) T 2r6h_A 36 TMNFKSGSYAQIKI 49 (290) T ss_dssp CCCCCTTCEEEEEE T ss_pred CCCCCCCEEEEEEE T ss_conf 37848980799996 No 76 >1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Probab=29.58 E-value=19 Score=14.81 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=31.4 Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHC----CCCEEEEEECCCCCCCCCHH Q ss_conf 1414677667643320477778752----98414874135666687513 Q gi|254780573|r 203 GWESPWGRGRPGWHIECSAMSSHYL----GKVFDIHGGGLDLIFPHHEN 247 (461) Q Consensus 203 ~w~spwG~GRPGWHiECsam~~~~l----g~~~DIH~GG~DL~FPHHEN 247 (461) -|+.+|....|.--.|+-|+..-.- -.-+|+|+||..+.+|-..+ T Consensus 143 n~~~~~~g~~~~sepEt~al~~~~~~~~~~~~i~~Hs~~~~i~~p~~~~ 191 (380) T 1h8l_A 143 NFPDQFFQVTDPPQPETLAVMSWLKTYPFVLSANLHGGSLVVNYPFDDD 191 (380) T ss_dssp CSCCSSSCCCSCCCHHHHHHHHHHHHSCEEEEEEEECSEEEEEESCSCC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCC T ss_conf 7311368987641799999999998359708998537862898367678 No 77 >1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Probab=29.26 E-value=17 Score=15.28 Aligned_cols=27 Identities=26% Similarity=0.656 Sum_probs=16.6 Q ss_pred CCHHHHHHHHHHCCCC-CCHHHEECCCE Q ss_conf 7513668888640875-30121003432 Q gi|254780573|r 244 HHENEIAQSCCADRIE-KTANIWIHNGF 270 (461) Q Consensus 244 HHENEiAQs~a~~~~~-~~a~yWlH~G~ 270 (461) |-|-++.|-|.--|.. ..-++||||.- T Consensus 46 ~de~~V~~FC~eiGV~r~V~KvWMHNnK 73 (80) T 1wh7_A 46 HDDVAVEQFCAETGVRRQVLKIWMHNNK 73 (80) T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHTTS T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 6599999999984978553677343575 No 78 >2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.06A {Sulfolobus tokodaii str} Probab=28.43 E-value=18 Score=15.10 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=28.5 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9877626854100012356777789999987411432012 Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 (461) Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~ 148 (461) ..|+..++.+.+..|- .+.+|.-+.-+-+|..+||+|.+ T Consensus 69 ~sl~~~~i~~~~l~~~-v~~Vpsgi~~l~~lq~~Gy~yIk 107 (108) T 2pd2_A 69 NSIRSQNLSHDQLIPG-IKIVTSGVGEIVRKQSEGWIYLA 107 (108) T ss_dssp HHHHHTTCCGGGBCTT-CEEESCHHHHHHHHHHTTCEEEE T ss_pred HHHHHCCCCHHHCCCC-CEEECHHHHHHHHHHHCCCEEEE T ss_conf 9998849997893999-88954289999999988987997 No 79 >1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Probab=27.43 E-value=26 Score=13.94 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=36.0 Q ss_pred EEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 8988898262233047984799961678888444111279999999999999707998457996055 Q gi|254780573|r 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNIT 73 (461) Q Consensus 7 lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niT 73 (461) ++-|++....+.--.-..+|.+|. .-.|++|+||.. ++.+.++..+.+ .|.++-+.. T Consensus 6 ~~~~~~~~~~~~~~~m~kkIgifg---GSFdP~H~GHl~------i~~~a~~~~~~d-~V~~~p~~~ 62 (242) T 1yum_A 6 HHHHHSSGLVPRGSHMGKRIGLFG---GTFDPVHIGHMR------SAVEMAEQFALD-ELRLLPNAR 62 (242) T ss_dssp ----------------CCEEEEEE---ECCTTCCHHHHH------HHHHHHHHHTCS-EEEEEECCC T ss_pred CCCCCCCCCCCCCCCCCCEEEEEC---CCCCCCHHHHHH------HHHHHHHHHCCC-EEEEEEECC T ss_conf 333234688999878998699967---585715099999------999999981999-899998397 No 80 >1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Probab=27.08 E-value=26 Score=13.90 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=24.6 Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 6055233888999987089864488489999999999999877626 Q gi|254780573|r 70 RNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLA 115 (461) Q Consensus 70 ~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~ 115 (461) |+||+.++++++. ..|++.+|+...++|-..+. T Consensus 14 mGV~~yeprV~~q-------------lLef~yRYtt~VL~DA~~ys 46 (68) T 1taf_A 14 LNVQEYEPRVVNQ-------------LLEFTFRYVTSILDDAKVYA 46 (68) T ss_dssp TTCCCBCTHHHHH-------------HHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHH-------------HHHHHHHHHHHHHHHHHHHH T ss_conf 6986036899999-------------99999999999999999998 No 81 >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Probab=26.12 E-value=27 Score=13.78 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=11.6 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 99987762685410001235677 Q gi|254780573|r 107 FVKDTTRLACLAPTHQPRATNHI 129 (461) Q Consensus 107 f~~d~~~L~v~~p~~~pr~t~~i 129 (461) .-.+=.+++|. |.+|+-+-+.+ T Consensus 81 lg~~H~~~gv~-~~~y~~~g~aL 102 (396) T 1gvh_A 81 IAQKHTSFQIK-PEQYNIVGEHL 102 (396) T ss_dssp HHHHHHHTTCC-HHHHHHHHHHH T ss_pred HHHHHHHCCCC-HHHHHHHHHHH T ss_conf 99999876998-79999999999 No 82 >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Probab=25.38 E-value=20 Score=14.73 Aligned_cols=58 Identities=22% Similarity=0.418 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC Q ss_conf 12356777789999987411432012892875220024543224675466664321022221012351266633776663 Q gi|254780573|r 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEP 202 (461) Q Consensus 123 pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~ 202 (461) |-+..||-+|..-|..|- .+||+-|+..+...-.+-.|-|.+.. ...|-. T Consensus 268 p~i~khicdiq~ti~al~----------------~~~p~cgriggeryfait~glrldqg--------------rg~gla 317 (756) T 2qvw_A 268 PEIAKHICDIQNTICALD----------------KSFPDCGRIGGERYFAITAGLRLDQG--------------RGRGLA 317 (756) T ss_dssp HHHHHHHHHHHHHHHHHG----------------GGSCCCSCCHHHHHHHHHHHHBCSCC--------------BTTBSB T ss_pred HHHHHHHHHHHHHHHHHC----------------CCCCCCCCCCCEEEEEEEEEEEECCC--------------CCCCCC T ss_conf 899998741477899861----------------77987554276358999875443167--------------776645 Q ss_pred EEECCCCC Q ss_conf 14146776 Q gi|254780573|r 203 GWESPWGR 210 (461) Q Consensus 203 ~w~spwG~ 210 (461) +|.+|+|. T Consensus 318 gwrtpfgp 325 (756) T 2qvw_A 318 GWRTPFGP 325 (756) T ss_dssp TTEEECBG T ss_pred CCCCCCCC T ss_conf 45587878 No 83 >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Probab=23.83 E-value=23 Score=14.30 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHCCCEEEEC Q ss_conf 9999999999889799986 Q gi|254780573|r 427 SADYIRKQLESKGFILEDY 445 (461) Q Consensus 427 ~AD~IRdeL~~~GI~ieDt 445 (461) .+++++.+|.+.|=...|+ T Consensus 383 ~~e~~~~~Lk~~gRy~~ev 401 (402) T 2b5o_A 383 NWEEMRRSMKKEHRWHVEV 401 (402) T ss_dssp CHHHHHHHHHHTTCEEEEE T ss_pred CHHHHHHHHHHCCCEEEEC T ss_conf 7999999998779779971 No 84 >3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Probab=23.21 E-value=24 Score=14.16 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=19.4 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 84799961678888444111279999999999999 Q gi|254780573|r 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR 58 (461) Q Consensus 24 ~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~ 58 (461) |-.++|+.| ..|..|+||. ++|.+.-+ T Consensus 1 ~M~rV~~~G--~FD~~H~GH~------~ll~~Ak~ 27 (143) T 3glv_A 1 GMIRVMATG--VFDILHLGHI------HYLKESKK 27 (143) T ss_dssp CCCEEEEEE--CCSSCCHHHH------HHHHHHHT T ss_pred CCEEEEEEE--EECCCCHHHH------HHHHHHHH T ss_conf 978999985--7899989999------99999987 No 85 >1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa} SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A* 2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A* 2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A* 2pjc_A* 1zli_A ... Probab=22.89 E-value=31 Score=13.37 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=24.7 Q ss_pred CCCCCCCCCCC----CHHHHHHHHHC---C---CCEEEEEECCCCCCCC Q ss_conf 46776676433----20477778752---9---8414874135666687 Q gi|254780573|r 206 SPWGRGRPGWH----IECSAMSSHYL---G---KVFDIHGGGLDLIFPH 244 (461) Q Consensus 206 spwG~GRPGWH----iECsam~~~~l---g---~~~DIH~GG~DL~FPH 244 (461) .|+..-.||.+ .|..|+..-.. . .-+|+|++|.-+.+|- T Consensus 156 ~p~~~~y~G~~p~SepEt~al~~~~~~~~~~~~~~i~~Hs~g~~i~~P~ 204 (306) T 1z5r_A 156 DPCDETYCGSAAESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPY 204 (306) T ss_dssp CTTSTTBCCSSTTCSHHHHHHHHHHHHTTTTEEEEEEEEESSSEEEESC T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECC T ss_conf 9875567999844137899999999963778509998158997688377 No 86 >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Probab=21.79 E-value=29 Score=13.58 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=6.6 Q ss_pred HHHHHHHHCCCEEEE Q ss_conf 999999988979998 Q gi|254780573|r 430 YIRKQLESKGFILED 444 (461) Q Consensus 430 ~IRdeL~~~GI~ieD 444 (461) +.+.+|.+.|=...| T Consensus 298 ~~~~~l~~~gr~~~E 312 (314) T 2rc5_A 298 EFKHHLEGAHQLFVE 312 (314) T ss_dssp HHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCEEEE T ss_conf 989767437977997 No 87 >3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus} Probab=21.31 E-value=25 Score=14.04 Aligned_cols=18 Identities=11% Similarity=0.464 Sum_probs=13.7 Q ss_pred EEEEEEECCCCCCCCCCCCCH Q ss_conf 479996167888844411127 Q gi|254780573|r 25 NIRMYVCGPTVYDFAHIGNAR 45 (461) Q Consensus 25 ~v~~Y~CGpTvy~~~HiG~~r 45 (461) +|.+| + .-.|++|+||.. T Consensus 3 kI~if-g--GsFdP~h~GHl~ 20 (177) T 3h05_A 3 KIAIF-G--SAFNPPSLGHKS 20 (177) T ss_dssp EEEEE-E--ECCSSCCHHHHH T ss_pred EEEEE-C--CCCCHHHHHHHH T ss_conf 79996-6--545541299999 No 88 >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} SCOP: a.100.1.12 c.2.1.6 Probab=21.16 E-value=33 Score=13.13 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=47.0 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 99999970799845799605523388899998708986448848999999999999987762685410001235677778 Q gi|254780573|r 53 LYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQM 132 (461) Q Consensus 53 l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~ 132 (461) |.|.|+..|+...| + ..|.+++.+++|++.|.-.. +..+...+....++...-++ .+..+ T Consensus 16 la~~L~~~g~~~~V-~---~~d~~~~~~~~a~~~g~id~---------------~~~~~~~~~~~~~dlvila~-p~~~~ 75 (281) T 2g5c_A 16 FAKSLRRSGFKGKI-Y---GYDINPESISKAVDLGIIDE---------------GTTSIAKVEDFSPDFVMLSS-PVRTF 75 (281) T ss_dssp HHHHHHHTTCCSEE-E---EECSCHHHHHHHHHTTSCSE---------------EESCGGGGGGTCCSEEEECS-CHHHH T ss_pred HHHHHHHCCCCCEE-E---EEECCHHHHHHHHHCCCCCE---------------ECCCHHHHCCCCCCEEEECC-CCHHH T ss_conf 99999816998489-9---99899999999998699761---------------04635553145788899836-80443 Q ss_pred HHHHHHHHHCCCCCCCCCCEEECCHHCCC Q ss_conf 99999874114320128928752200245 Q gi|254780573|r 133 IYLIQNIILHGHAYEANNEIIFDTSSIPN 161 (461) Q Consensus 133 i~~i~~L~~~g~aY~~~g~VyFdv~~~~~ 161 (461) .+++++|.. +...+.+..||++.+. T Consensus 76 ~~~~~~l~~----~~~~~~ii~Dv~Svk~ 100 (281) T 2g5c_A 76 REIAKKLSY----ILSEDATVTDQGSVKG 100 (281) T ss_dssp HHHHHHHHH----HSCTTCEEEECCSCCT T ss_pred HHHHHHHHH----CCCCCCEEECCCCHHH T ss_conf 215655531----0246621323344079 No 89 >2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide bond forming enzyme, metal dependent, NEW fold, GDP binding MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A Probab=20.65 E-value=34 Score=13.06 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=28.9 Q ss_pred EEECCCCCCCCCCCCHHHHHH--HHHCCCCEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 141467766764332047777--8752984148741356666875136688886 Q gi|254780573|r 203 GWESPWGRGRPGWHIECSAMS--SHYLGKVFDIHGGGLDLIFPHHENEIAQSCC 254 (461) Q Consensus 203 ~w~spwG~GRPGWHiECsam~--~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a 254 (461) +.-.||=.|--|=-|-||-+. ..|-|. -|++|-=.-...+.--.|+|-+-. T Consensus 154 s~grp~R~G~t~vAIG~aGi~~l~d~~G~-~D~~G~~L~vT~~avaDelAaAA~ 206 (254) T 2phn_A 154 TNGRCFRRGVVGFAIGISGVKAMKDWIGR-KDLYGRELEVTVECVADEIAAFAN 206 (254) T ss_dssp EEEETTEEEEEEEEEEEESBCSCEECTTC-BCTTSCBCSCCEECHHHHHHHHHH T ss_pred CCCCCCCCCCEEEEEEECCCCHHHHCCCC-CCCCCCEEECCHHHHHHHHHHHHH T ss_conf 89874425751389873486246641688-688887631215999998987888 No 90 >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Probab=20.49 E-value=31 Score=13.31 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=8.3 Q ss_pred CCCCEEEEEECCCCEEEEEEE Q ss_conf 898262233047984799961 Q gi|254780573|r 11 LERKITEFQAIDPSNIRMYVC 31 (461) Q Consensus 11 lt~~~~~f~p~~~~~v~~Y~C 31 (461) |+-+++..+++.+.-.++..= T Consensus 3 l~~~V~~v~~lt~~v~~i~l~ 23 (232) T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIV 23 (232) T ss_dssp EEEEEEEEEESSSSCEEEEEE T ss_pred EEEEEEEEEEECCCEEEEEEE T ss_conf 879999999908991999998 No 91 >3bz1_H PSII-H, photosystem II reaction center protein H; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_H* 2axt_H* 3bz2_H* 3kzi_H* 3a0b_H* 3a0h_H* Probab=20.38 E-value=26 Score=13.92 Aligned_cols=15 Identities=33% Similarity=0.838 Sum_probs=12.5 Q ss_pred EECCCCCCCCCCCCH Q ss_conf 414677667643320 Q gi|254780573|r 204 WESPWGRGRPGWHIE 218 (461) Q Consensus 204 w~spwG~GRPGWHiE 218 (461) .+|..|+.-|||-.- T Consensus 14 lNSeyGKVaPGWGTT 28 (66) T 3bz1_H 14 LNSEYGKVAPGWGTT 28 (66) T ss_dssp TSCCTTCCBSTTTTH T ss_pred CCCCCCCCCCCCCCC T ss_conf 654357415886674 No 92 >2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Probab=20.25 E-value=23 Score=14.34 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=20.8 Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 479996167888844411127999999999999970799 Q gi|254780573|r 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 (461) Q Consensus 25 ~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~ 63 (461) +|.+| |.-.|++|.||.+ ++.+.++..... T Consensus 3 ki~if---~GsFdP~h~GHl~------i~~~a~~~~~~~ 32 (189) T 2qtr_A 3 KIGII---GGTFDPPHYGHLL------IANEVYHALNLE 32 (189) T ss_dssp EEEEE---EECCSSCCHHHHC-------CHHHHHHTTCS T ss_pred EEEEE---CCCCCCCCHHHHH------HHHHHHHHCCCC T ss_conf 69996---6476717499999------999999984999 No 93 >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Probab=20.10 E-value=29 Score=13.57 Aligned_cols=20 Identities=20% Similarity=-0.027 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHCCCEEEEC Q ss_conf 99999999999889799986 Q gi|254780573|r 426 SSADYIRKQLESKGFILEDY 445 (461) Q Consensus 426 ~~AD~IRdeL~~~GI~ieDt 445 (461) ..|++++.+|.+.|=.++|+ T Consensus 291 ~~~~~~~~~l~~~gRy~~d~ 310 (311) T 3lo8_A 291 ESWDQKLAQLKKNKQWHVEV 310 (311) T ss_dssp CCHHHHHHHHHHTTCEEEEE T ss_pred CCHHHHHHHHHHCCCEEEEC T ss_conf 55999999999879879961 Done!