BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (461 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] gi|254040250|gb|ACT57046.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/461 (100%), Positives = 461/461 (100%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY Sbjct: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT Sbjct: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP Sbjct: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL Sbjct: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR Sbjct: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN Sbjct: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL Sbjct: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP Sbjct: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 >gi|315121767|ref|YP_004062256.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495169|gb|ADR51768.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 461 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/460 (81%), Positives = 418/460 (90%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+K IK+YNTL+R+ EFQAIDPSN+RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR++ Sbjct: 1 MQKNIKLYNTLKRETIEFQAIDPSNVRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRHH 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE+CVTYVRNITDIDDKIIERAR++HPSI I++AI +IT KN +QF+ DTT+L CL PT Sbjct: 61 YGEQCVTYVRNITDIDDKIIERARRDHPSIAIDNAICMITEKNIKQFILDTTKLGCLIPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 HQPRAT +IPQMI LI+ II HGHAYE+NNEI+FDT+S PNYGS S+RKIDEQK G RVP Sbjct: 121 HQPRATEYIPQMINLIEKIISHGHAYESNNEILFDTNSAPNYGSLSQRKIDEQKTGARVP 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 EKYHKKNPADF+LWK S+ EPGWESPWG GRPGWHIECSAMSS++LGK+FDIHGGGLDL Sbjct: 181 EKYHKKNPADFVLWKTSSEEEPGWESPWGIGRPGWHIECSAMSSYHLGKLFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQSCCA R +K AN+WIHNGFLNLEG KMSKSNGNFITINELLETKKFGG+ Sbjct: 241 IFPHHENEIAQSCCAYRTDKIANVWIHNGFLNLEGHKMSKSNGNFITINELLETKKFGGQ 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 +WPAPVIRLAMLMT YREPIDFTVQRL EAEILLSKWP T+ S+G DPAVLSAL+NDLN Sbjct: 301 AWPAPVIRLAMLMTSYREPIDFTVQRLQEAEILLSKWPPTTESRGKPDPAVLSALFNDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TVSAIQALHKLARES KN DLLP FNASA+ILGIEV +E L+KN+SIAIEKLVQERL+LL Sbjct: 361 TVSAIQALHKLARESIKNPDLLPTFNASANILGIEVREEPLSKNLSIAIEKLVQERLLLL 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K+K FS+AD IR+QLE KGF+LEDYK+P + QRMTRWKQK Sbjct: 421 KIKNFSAADSIREQLECKGFVLEDYKDPKSKQRMTRWKQK 460 >gi|150395937|ref|YP_001326404.1| cysteinyl-tRNA synthetase [Sinorhizobium medicae WSM419] gi|187631642|sp|A6U7D9|SYC_SINMW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150027452|gb|ABR59569.1| cysteinyl-tRNA synthetase [Sinorhizobium medicae WSM419] Length = 466 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 276/456 (60%), Positives = 349/456 (76%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ T+F+ IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 LKLYNTLTREKTDFRPIDPKNVRMYVCGPTVYDFAHIGNARPIIVFDVLFRLLRHVYGTD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T + +F++D L CL PT QPR Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTERTETRFLEDAALLGCLDPTVQPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IP MI +I+ +I GHAYEA E++FDT S+ YG S+R +DEQ+ G RV + H Sbjct: 127 ATENIPGMIEIIETLIAKGHAYEAEGEVLFDTRSMAEYGQLSKRNLDEQQAGARVAVEAH 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S EPGWESPWGRGRPGWHIECSAMS YLG+VFDIHGGG+DLIFPH Sbjct: 187 KRNPGDFVLWKLSAGHEPGWESPWGRGRPGWHIECSAMSGRYLGEVFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN+W+HNGFL +EGRKMSKS GNFITI +LL T+KFGGR WP Sbjct: 247 HENEIAQSRCAHGTAVMANVWMHNGFLQVEGRKMSKSEGNFITIYDLLHTEKFGGRKWPG 306 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLSKWP ++ G DPAV++AL +DLNTV+A Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVHGSASGEADPAVVAALTDDLNTVAA 366 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA+++T + L F ASA +LG+E + L++ + I+ V+ERL LLK K Sbjct: 367 IQALHALAQKATADARHLGAFAASAALLGVEPKEIELDEAVVQEIDGRVRERLELLKSKN 426 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462 >gi|15964864|ref|NP_385217.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti 1021] gi|307321838|ref|ZP_07601224.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti AK83] gi|21264014|sp|Q92R20|SYC_RHIME RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15074043|emb|CAC45690.1| Probable cysteinyl-tRNA synthetase [Sinorhizobium meliloti 1021] gi|306892507|gb|EFN23307.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti AK83] Length = 466 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 276/456 (60%), Positives = 347/456 (76%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 LKLYNTLTREKADFRPIDPQNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGAD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T K QF++D T L CL PT QPR Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTEKTETQFLEDATVLGCLDPTVQPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI +I+ +I GHAYEA E++FDT S+ +YG S+R +DEQ+ G RV + H Sbjct: 127 ATENIAGMIEIIEKLIAKGHAYEAEGEVLFDTRSMDDYGQLSKRNLDEQQAGARVAVEAH 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGG+DLIFPH Sbjct: 187 KKNPGDFVLWKLSAEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNFITI ELL T+KFGGR WP Sbjct: 247 HENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFITIYELLHTEKFGGRKWPG 306 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLSKWP + G DPAV++AL +DLNTV+A Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVYGDAAGEADPAVVTALADDLNTVAA 366 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA++++ + L F ASA +LG+ + L++ + I+ V+ERL LLK K Sbjct: 367 IQALHALAQKASADSRHLGTFAASAALLGVVPKEVELDEAVVHEIDGRVRERLELLKAKN 426 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462 >gi|307300935|ref|ZP_07580704.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti BL225C] gi|306903890|gb|EFN34476.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti BL225C] Length = 466 Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust. Identities = 276/456 (60%), Positives = 347/456 (76%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 LKLYNTLTREKADFRPIDPQNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGAD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T K QF++D T L CL PT QPR Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTEKTETQFLEDATVLGCLDPTVQPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI +I+ +I GHAYEA E++FDT S+ +YG S+R +DEQ+ G RV + H Sbjct: 127 ATENIAGMIEIIEKLIAKGHAYEAEGEVLFDTRSMDDYGQLSKRNLDEQQAGARVAVEAH 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGG+DLIFPH Sbjct: 187 KKNPGDFVLWKLSAEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNFITI ELL T+KFGGR WP Sbjct: 247 HENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFITIYELLHTEKFGGRKWPG 306 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLSKWP + G DPAV++AL +DLNTV+A Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVYGDAAGEADPAVVTALADDLNTVAA 366 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA++++ + L F ASA +LG+ + L++ + I+ V+ERL LLK K Sbjct: 367 IQALHALAQKASADSRHLGTFAASAALLGLVPKEVELDEAVVHEIDGRVRERLELLKAKN 426 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462 >gi|307946682|ref|ZP_07662017.1| cysteinyl-tRNA synthetase [Roseibium sp. TrichSKD4] gi|307770346|gb|EFO29572.1| cysteinyl-tRNA synthetase [Roseibium sp. TrichSKD4] Length = 477 Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 267/458 (58%), Positives = 346/458 (75%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++ NTL R +F I +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLL + YG Sbjct: 19 KGLRVTNTLTRTKEDFVPISDANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLNHLYG 78 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA ++HP +P+N+AI+ +T + QF D RL CL PTH+ Sbjct: 79 GENVTYARNITDVDDKINARALRDHPDLPLNEAIAKVTERTANQFHVDIARLGCLEPTHE 138 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI MI +I +I G+AY A+ E++FDT+S+P YG S+R +DEQK G R+ + Sbjct: 139 PRATGHIGGMIAMIDTLIAKGNAYVASGEVLFDTTSMPAYGGLSKRNLDEQKAGARIAVE 198 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HKKNPADF+LWK S+ EPGW+SPWGRGRPGWHIECS MS H+LGKVFDIHGGGLDLIF Sbjct: 199 AHKKNPADFVLWKLSSDEEPGWDSPWGRGRPGWHIECSVMSEHHLGKVFDIHGGGLDLIF 258 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA+ +K +N W+HNGFL +EGRKMSKS GNF TI+ELL+ + FGGR W Sbjct: 259 PHHENEIAQSCCANGTKKMSNYWMHNGFLQVEGRKMSKSEGNFFTIHELLDDETFGGRKW 318 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 P V+RLAMLMTHYREPIDF+ +RL EAE LLSKWP + A+L AL +DLNTV Sbjct: 319 PGEVLRLAMLMTHYREPIDFSKKRLEEAERLLSKWPAPIETDAAPSEAILEALTDDLNTV 378 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422 +AIQ LH+LA E+ +N ++L +++ASA +LG++ K ++ + +I+ V ERL LK Sbjct: 379 AAIQVLHQLAAEAAQNPEMLGVYSASAALLGVQPVKADTSELDTSSIDARVSERLEQLKA 438 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ AD IR +L ++G +L+D K+ + G+R+T W+ K Sbjct: 439 KNWAEADRIRDELAAEGILLKDGKDAETGERVTTWEVK 476 >gi|15888416|ref|NP_354097.1| cysteinyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] gi|24418698|sp|Q8UGG4|SYC_AGRT5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15156102|gb|AAK86882.1| cysteinyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] Length = 461 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/460 (60%), Positives = 342/460 (74%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++K++NTL R+ +EF ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Sbjct: 1 MSLRLKLHNTLTREKSEFAPIDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE VTY RNITD+DDKI RA +++P +P+NDAI +T K QF D L CL PT Sbjct: 61 YGEDHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKKTADQFHDDVAALGCLQPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT++I +MIYLI+ +I GHAY+A E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 121 VEPRATDYIAEMIYLIERLIERGHAYKAGGEVLFDTRSMADYGQLSKRPLDEQQAGARVA 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + HKKNP DF+LWK S+ EPGWESPWG GRPGWHIECSAM+ YLG+VFDIHGGGLDL Sbjct: 181 VEAHKKNPGDFVLWKLSSESEPGWESPWGLGRPGWHIECSAMAGRYLGEVFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA AN+W+HNGF+ +EGRKMSKS GNF+TI ELL T KFGGR Sbjct: 241 IFPHHENEIAQSRCAHGTHVMANVWMHNGFVQVEGRKMSKSEGNFVTIYELLHTDKFGGR 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 WP V+RLAMLMTHYREPIDF+V+RL EAE LLSKWP TS D VL AL +DLN Sbjct: 301 QWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLLSKWPAAETSDAAADETVLEALADDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TV+A+QALH LA + + LP F ASA +LG+ K +++ I A++ LV+ RL +L Sbjct: 361 TVAAVQALHALAHAANTDPSRLPAFAASAALLGVLPKKTEMDEAIVSAVDALVELRLEML 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K K F+ AD +R +L KG L+D K+ + G+R T W+ K Sbjct: 421 KAKNFAEADRLRDELSEKGIQLKDGKDKETGERTTTWELK 460 >gi|325292453|ref|YP_004278317.1| Cysteinyl-tRNA synthetase [Agrobacterium sp. H13-3] gi|325060306|gb|ADY63997.1| Cysteinyl-tRNA synthetase [Agrobacterium sp. H13-3] Length = 461 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 275/460 (59%), Positives = 342/460 (74%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++K++NTL R+ TEF ID N+RMYVCGPTVYDFAHIGNARP+IVFDVLYRLLR+ Sbjct: 1 MSLRLKLHNTLTREKTEFAPIDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLYRLLRHV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE VTY RNITD+DDKI RA +++P +P+NDAI +T K QF +D L CL PT Sbjct: 61 YGESHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKKTADQFHEDVAALGCLQPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT++I +MI +I+ +I GHAY A E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 121 VEPRATDYIAEMIDIIEKLIARGHAYAAGGEVLFDTRSMADYGQLSKRPLDEQQAGARVA 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + HKK P DF+LWK S+ EPGWESPWGRGRPGWHIECSAM+ YLG+VFDIHGGGLDL Sbjct: 181 VEAHKKTPGDFVLWKLSSDNEPGWESPWGRGRPGWHIECSAMAGRYLGEVFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA + AN+W+HNGF+ +EGRKMSKS GNF+TI ELL T+KFGGR Sbjct: 241 IFPHHENEIAQSRCAHGTQVMANVWMHNGFVQVEGRKMSKSEGNFVTIYELLHTEKFGGR 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 WP V+RLAMLMTHYREPIDF+V+RL EAE LL+KWP S D VL AL +DLN Sbjct: 301 QWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLLAKWPAAEASDAAPDETVLDALADDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TV+A+QALH LA + + LP F ASA +LG+ K +++ I A++ LVQ RL +L Sbjct: 361 TVAAVQALHALAHAANTDPARLPAFAASAALLGVLPKKAEVDEAIVSAVDALVQLRLEML 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K K F+ AD +R +L KG L+D K+ + G+R T W+ K Sbjct: 421 KAKNFAEADRLRDELSEKGIQLKDGKDKETGERTTTWELK 460 >gi|86357063|ref|YP_468955.1| cysteinyl-tRNA synthetase [Rhizobium etli CFN 42] gi|109894928|sp|Q2KAA8|SYC_RHIEC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86281165|gb|ABC90228.1| cysteinyl-tRNA synthetase protein [Rhizobium etli CFN 42] Length = 458 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 267/457 (58%), Positives = 340/457 (74%), Gaps = 5/457 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ + F+ ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 6 ELKLYNTLTREKSAFKPIDAENVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P+ +P Sbjct: 66 DHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPSVEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +MI +I+ +I +GHAY A E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 126 RATDNIAEMIQIIEKLIGNGHAYVAAGEVLFDTKSMADYGELSKRPLDEQQAGARVAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKKNP DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLIFP Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR WP Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRKWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+++RL EAE LL+KWP D +VL+AL +DLNTV+ Sbjct: 306 GEVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPTAEAGDAAPDESVLNALADDLNTVA 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 A+QALH LA+ +F ASA +LG+ K +++ + A++ LV RL +LK K Sbjct: 366 AVQALHALAQPGND-----AVFAASAVLLGVLPKKVEIDEAFAAAVDALVAMRLEVLKAK 420 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F AD IR +L +KG L+D K+P+ G+R+T W+ K Sbjct: 421 NFVEADRIRDELGAKGIQLKDGKDPETGERVTTWEVK 457 >gi|254504528|ref|ZP_05116679.1| cysteinyl-tRNA synthetase [Labrenzia alexandrii DFL-11] gi|222440599|gb|EEE47278.1| cysteinyl-tRNA synthetase [Labrenzia alexandrii DFL-11] Length = 475 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/462 (58%), Positives = 335/462 (72%), Gaps = 4/462 (0%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+ NTL R+ +F AID SN+R+YVCGPTVYDFAHIGNARP IVFDVLYRLLR+ YG Sbjct: 13 KGLKLTNTLTRQKEDFCAIDDSNVRLYVCGPTVYDFAHIGNARPAIVFDVLYRLLRHLYG 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA +++P +P+N+AI+++T K Q+ KD L CL PT Q Sbjct: 73 AEHVTYARNITDVDDKINARALRDYPDMPLNEAIALVTKKTADQYQKDVAALGCLEPTVQ 132 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA----NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PRAT HI M+ +I+ +I GHAY A E++FDT S+PNYG S+RK+DEQ G R Sbjct: 133 PRATEHIDGMVKMIEQLIEKGHAYVAETPEGGEVLFDTVSMPNYGGLSKRKLDEQIAGAR 192 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + HKKNP DF+LWK S+P EPGW+SPWGRGRPGWHIECS MS H+LGKVFDIHGGGL Sbjct: 193 IAVDSHKKNPGDFVLWKLSSPEEPGWDSPWGRGRPGWHIECSVMSEHHLGKVFDIHGGGL 252 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQSCCA+ + +N W+HNGF+ +EGRKMSKS GNF TI+ELLET+ FG Sbjct: 253 DLIFPHHENEIAQSCCANGTKTMSNYWVHNGFVQVEGRKMSKSEGNFFTIHELLETENFG 312 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYND 358 GR WP V+RLAMLMTHY+EPIDF+V++L EAE LL KWP + VL A+ +D Sbjct: 313 GRKWPGEVLRLAMLMTHYKEPIDFSVRKLEEAENLLGKWPDLVETDAAPAADVLDAMNDD 372 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLI 418 LNT +AIQALH LA E+ K+ L F+ASA +LG++ ++ AI + RL Sbjct: 373 LNTAAAIQALHGLAGEANKDPHKLAEFSASAALLGLKPVAADMSGIDETAIATAITARLE 432 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 L K ++ AD IR +L S+G L+D K+ + G R+T W K Sbjct: 433 ALNGKNWAEADRIRDELASQGIALKDSKDSETGARVTTWDLK 474 >gi|116251309|ref|YP_767147.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] gi|123384854|sp|Q1MJ22|SYC_RHIL3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115255957|emb|CAK07038.1| putative cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] Length = 463 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 270/457 (59%), Positives = 344/457 (75%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLRY YGE Sbjct: 6 ELKLYNTLTREKSVFSPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRYVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+NDAI +T K QF D L CL P +P Sbjct: 66 DHVTYARNITDVDDKINARALRDHPGLPLNDAIRAVTEKTETQFHADVAELGCLEPNFEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +M +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 126 RATDNIVEMTEIIEKLIGNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARIAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKKNP DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIFP Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGDVFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNF+TI+ELL+T+ FGGR WP Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFVTIHELLQTETFGGRKWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+++RL EAE LL+KWP S D +VL+AL +DLNTV+ Sbjct: 306 GQVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPAAEASDAAPDESVLNALSDDLNTVA 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 A+QALH LA+ + + +F A+A +LG+ K +++ ++ A++ LV RL +LK K Sbjct: 366 AVQALHALAQAAHGDPTARAVFAATADLLGLLPKKMEIDEAVASAVDALVAMRLEMLKAK 425 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 426 NFTEADKIRDELTAKGIQLKDGKDAVTGERVTTWEVK 462 >gi|241203922|ref|YP_002975018.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857812|gb|ACS55479.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 463 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/457 (58%), Positives = 343/457 (75%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 6 ELKLYNTLTREKSVFSPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+NDAI +T K QF D L CL P+ +P Sbjct: 66 DHVTYARNITDVDDKINARALRDHPGLPLNDAIRAVTEKTETQFHTDVAELGCLEPSFEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +M +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 126 RATDNIVEMTEIIEKLIGNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARIAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKK+P DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIFP Sbjct: 186 HKKHPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGNVFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNF+TI+ELL T+ FGGR WP Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFVTIHELLHTETFGGRKWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+++RL EAE LL+KWP D +VL+AL +DLNTV+ Sbjct: 306 GQVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPAAEVGDAAPDESVLNALSDDLNTVA 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 A+QALH LA+ + + +F A+A +LG+ K +++ ++ A++ LV RL +LK K Sbjct: 366 AVQALHALAQAAHTDPTASAVFAATADLLGLLPKKMEIDEAVASAVDALVAMRLEMLKAK 425 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 426 NFTEADKIRDELTAKGIQLKDGKDAVTGERVTTWEVK 462 >gi|227821436|ref|YP_002825406.1| cysteinyl-tRNA synthetase [Sinorhizobium fredii NGR234] gi|227340435|gb|ACP24653.1| cysteinyl-tRNA synthetase [Sinorhizobium fredii NGR234] Length = 463 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/456 (59%), Positives = 344/456 (75%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 4 LKLYNTLTREKADFRPIDPLNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGES 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T K QF+ D T L CL PT QPR Sbjct: 64 RVTYARNITDVDDKINARALRDYPGLPLNEAIRRVTEKTETQFLDDATVLGCLEPTVQPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I +M+ +I+ ++ GHAY+A E++FDT S+ +YG SRR +DEQ+ G RV + H Sbjct: 124 ATESIAEMVEIIEKLLAKGHAYQAEGEVLFDTKSMRDYGQLSRRNLDEQQAGARVAVEAH 183 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIFPH Sbjct: 184 KKNPGDFVLWKLSQEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGLDLIFPH 243 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA + AN+W+HNGFL +EGRKMSKS GNF+TI ELL T+KFGGR WP Sbjct: 244 HENEIAQSRCAHGTDVMANVWMHNGFLQVEGRKMSKSEGNFVTIYELLHTEKFGGRQWPG 303 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLS+WP + G D A+++AL +DLNTV+A Sbjct: 304 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSRWPVPGEAAGEADAAIVAALADDLNTVAA 363 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA++++ + L F ASA +LG+ + L+ + I+ V+ RL LLK K Sbjct: 364 IQALHALAQKASVDAQYLGAFAASAALLGVLPKEIELDVAVVEEIDGRVRARLELLKAKN 423 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 424 YAEADAIRADLLARGIQLKDGKDPETGERVTTWEVK 459 >gi|222085422|ref|YP_002543952.1| cysteinyl-tRNA synthetase protein [Agrobacterium radiobacter K84] gi|254765171|sp|B9JCA5|SYC_AGRRK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221722870|gb|ACM26026.1| cysteinyl-tRNA synthetase protein [Agrobacterium radiobacter K84] Length = 463 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 274/457 (59%), Positives = 342/457 (74%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ +FQ ID N+R+YVCGPTVYDFAHIGNARP IVFDVL+RLLR YGE Sbjct: 6 QLKLYNTLTREKVDFQPIDRENVRLYVCGPTVYDFAHIGNARPAIVFDVLFRLLRQVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+N+AI ++T K Q+ +DTT L CL PT QP Sbjct: 66 NHVTYARNITDVDDKINARALRDHPGLPLNEAIRLVTEKTETQYYQDTTALGCLEPTVQP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I QMI +I+ +I GHAY+A E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 126 RATDNIAQMIEIIEKLIARGHAYQAAGEVLFDTKSMADYGQLSKRNLDEQQAGARIAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKK+P DF+LWK S EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIFP Sbjct: 186 HKKSPGDFVLWKLSAENEPGWESPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + AN+W+HNGFL +EGRKMSKS GNF+TI ELL+T+K GGR+WP Sbjct: 246 HHENEIAQSRCAHGTDVMANVWMHNGFLQVEGRKMSKSEGNFVTIYELLQTEKLGGRTWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+V+RL EAE LL+KWP D VL AL +DLNTV Sbjct: 306 GAVLRLAMLMTHYREPIDFSVKRLEEAERLLAKWPAADIGNAKPDATVLVALADDLNTVV 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 AIQALH LA+ + + +LP+F ASA +LG+ K ++ ++ I+ V+ RL LLK K Sbjct: 366 AIQALHALAQAANADASILPVFAASAALLGLLPEKVEMDDAVASEIDARVRARLELLKAK 425 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F+ AD IR L ++G L+D K+P G+R+T W+ K Sbjct: 426 NFAEADKIRDTLLAEGIQLKDGKDPATGERITTWEVK 462 >gi|118588096|ref|ZP_01545506.1| cysteinyl-tRNA synthetase [Stappia aggregata IAM 12614] gi|118439718|gb|EAV46349.1| cysteinyl-tRNA synthetase [Stappia aggregata IAM 12614] Length = 471 Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust. Identities = 261/458 (56%), Positives = 332/458 (72%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+ NTL R+ +F+AID N+R+YVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 13 KGLKLTNTLTRQKEDFRAIDDGNVRLYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY RNITD+DDKI RA ++ P +P+N+AI+ +T K QF KD L L P+ + Sbjct: 73 ADHVTYARNITDVDDKINARALRDFPDLPLNEAIARVTQKTADQFHKDIRSLGVLEPSIE 132 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI M+ +I +I GHAY+A E++FDT S+P+YG S+RK+DEQ G R+ Sbjct: 133 PRATQHIGGMVEMIAALIEKGHAYQAGGEVLFDTQSMPDYGGLSKRKLDEQLAGARIAVD 192 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECS MS+ +LG+VFDIHGGGLDLIF Sbjct: 193 AHKKNPGDFVLWKLSSDEEPGWDSPWGRGRPGWHIECSVMSAQHLGEVFDIHGGGLDLIF 252 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + AN W+HNGFL +EGRKMSKS GNF TI ELLET FGGR W Sbjct: 253 PHHENEIAQSRCAHGTKVMANYWMHNGFLQVEGRKMSKSEGNFFTIQELLETDSFGGRKW 312 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 P V+RLAMLMT+YREPIDF+ ++L EAE LL++WP + VL AL +DLNT Sbjct: 313 PGEVLRLAMLMTNYREPIDFSKRKLEEAENLLARWPDPVETDAAPAAEVLDALLDDLNTA 372 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422 AIQALH LA E++K+ L +++ASA +LG+ K L+ AI+ +++RL L Sbjct: 373 GAIQALHALAVEASKDPAKLTVYSASAALLGVHPVKADLSGVDEAAIQAAIEKRLEALNA 432 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ AD IR L S+G +L+D K+ + G R+T W+ K Sbjct: 433 KNWAEADAIRDDLTSQGILLKDSKDSETGARVTTWEVK 470 >gi|327187990|gb|EGE55220.1| cysteinyl-tRNA synthetase protein [Rhizobium etli CNPAF512] Length = 463 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 267/457 (58%), Positives = 343/457 (75%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ + F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 6 ELKLYNTLTREKSVFAPIDPKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P +P Sbjct: 66 SHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPNVEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +MI +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 126 RATDNIEEMIEIIEKLISNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARVAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLIFP Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWDSPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR WP Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRKWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+++RL EAE LL+KWP T D AV++AL +DLNTV+ Sbjct: 306 GAVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPATEPGDASPDEAVMNALADDLNTVA 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 A+QALH LA+ + + + F A+A +LG+ K +++ ++ A++ LV RL +LK K Sbjct: 366 AVQALHALAQAAHTDAAIGATFAATAFLLGVLPKKAEIDEAVAAAVDALVAMRLEMLKAK 425 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F+ AD IR QL +KG L+D K+ G+R+T W+ K Sbjct: 426 NFAEADKIRDQLTTKGIQLKDGKDAATGERVTTWEVK 462 >gi|190891109|ref|YP_001977651.1| cysteinyl-tRNA synthetase [Rhizobium etli CIAT 652] gi|229558782|sp|B3PUS4|SYC_RHIE6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|190696388|gb|ACE90473.1| cysteinyl-tRNA synthetase protein [Rhizobium etli CIAT 652] Length = 463 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/457 (58%), Positives = 344/457 (75%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 6 ELKLYNTLTREKSVFAPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P +P Sbjct: 66 SHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPNVEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +MI +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 126 RATDNIEEMIEIIEKLISNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARVAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLIFP Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWDSPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR WP Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRKWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+++RL EAE LL+KWP T D AV++AL +DLNTV+ Sbjct: 306 GAVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPATEPGDAKPDEAVMNALADDLNTVA 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 A+QALH LA+ + + + F A+A +LG+ K +++ ++ A++ LV RL +LK K Sbjct: 366 AVQALHALAQAAHTDAAVGATFAATAFLLGVLPKKAEIDEAVAAAVDALVAIRLEMLKAK 425 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 426 NFAEADKIRDELTAKGIQLKDGKDAATGERVTTWEVK 462 >gi|319784480|ref|YP_004143956.1| cysteinyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170368|gb|ADV13906.1| cysteinyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 478 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 258/475 (54%), Positives = 329/475 (69%), Gaps = 20/475 (4%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++YNTL R +F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 QGLRLYNTLTRTKEDFVPIDPLNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQE------HPSIPINDAISIITSKNTQQFVKDTTRLAC 116 + VTYVRNITD+DDKI RA ++ ++ +N+AI +T K QF D L C Sbjct: 66 QTHVTYVRNITDVDDKINARALRDFGGEIASGTLSLNEAIRRVTEKTADQFHSDVAVLGC 125 Query: 117 LAPTHQPRATNHIP-------QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 L PT +PRAT + MI LIQ++I GHAY A E++FDT+S+P+YG S+R Sbjct: 126 LEPTVEPRATEFVEPRADGKVDMITLIQSLIERGHAYVAAGEVLFDTASMPDYGQLSKRN 185 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +DEQ+ G RV HKKNP DF+LWK S+P EPGW SPWGRGRPGWHIECSAMS+ YLG+ Sbjct: 186 LDEQQAGARVAVDAHKKNPGDFVLWKLSSPEEPGWNSPWGRGRPGWHIECSAMSAAYLGE 245 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 VFDIHGGGLDLIFPHHENEIAQS CA E ANIW+HNGFL +EG+KMSKS GNF +IN Sbjct: 246 VFDIHGGGLDLIFPHHENEIAQSRCAHGTEMMANIWMHNGFLQVEGQKMSKSLGNFYSIN 305 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----TSKG 345 ELLET+ FGGR WP V+RLAMLMTHYREPIDF+V++L EAE L KW + + T+ G Sbjct: 306 ELLETETFGGRKWPGEVLRLAMLMTHYREPIDFSVRKLEEAENTLRKWKRGADLAPTAAG 365 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNI 405 + ++ AL +DL T +A Q L +LA E+ +D AS LG +V +++ Sbjct: 366 QVPVEIIDALSDDLATYAAFQVLTQLAGEAMDGNDAAASLKASLLFLGFDVASAKVDEG- 424 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + K + +RL + K ++ AD IR L ++G L+D K+P G+R+T W+ K Sbjct: 425 --HVGKAIAKRLAFIAAKSWAEADRIRDDLLAQGIQLKDGKDPVTGERITTWEVK 477 >gi|209548641|ref|YP_002280558.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226710847|sp|B5ZWB3|SYC_RHILW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|209534397|gb|ACI54332.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 463 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/457 (58%), Positives = 338/457 (73%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ T F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 6 ELKLYNTLTREETVFAPIDPDNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+N AI +T + QF D L CL P+ +P Sbjct: 66 DHVTYARNITDVDDKINARALRDHPGLPLNQAIRAVTERTETQFHADVAELGCLEPSVEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +M +I+ +I +GHAY A E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 126 RATDNIVEMTEIIEKLIGNGHAYVAAGEVLFDTKSMADYGQLSKRPLDEQQAGARIAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKKN DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIFP Sbjct: 186 HKKNSGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGDVFDIHGGGLDLIFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E ANIW+HNGFL +EGRKMSKS GNF+TI++LL T+ FGGR WP Sbjct: 246 HHENEIAQSRCAHGTEVMANIWMHNGFLQVEGRKMSKSEGNFVTIHDLLHTQIFGGRKWP 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAMLMTHYREPIDF+++RL EAE LL+KWP T D VL+AL ++LNTV+ Sbjct: 306 GEVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPATEPGDAEPDETVLNALADNLNTVA 365 Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 A+QALH LA+ + + F A+A +LG+ K +++ ++ A++ LV RL +LK K Sbjct: 366 AVQALHALAQAAHTDPAAGARFAATAALLGLLPKKAEIDEAVAAAVDALVAMRLEMLKAK 425 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 426 NFAEADKIRDELTAKGIQLKDGKDAATGERVTTWEVK 462 >gi|13476470|ref|NP_108040.1| cysteinyl-tRNA synthetase [Mesorhizobium loti MAFF303099] gi|21264021|sp|Q984X8|SYC_RHILO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|14027231|dbj|BAB54185.1| cysteine-tRNA ligase [Mesorhizobium loti MAFF303099] Length = 477 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/474 (54%), Positives = 332/474 (70%), Gaps = 19/474 (4%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++YNTL R T+F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 QGLRLYNTLTRAKTDFVPIDALNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPS------IPINDAISIITSKNTQQFVKDTTRLAC 116 + VTYVRNITD+DDKI RA ++ S + +N+AI +T K QF +D L C Sbjct: 66 QAHVTYVRNITDVDDKINARALRDFGSEISAGKLSLNEAIRRVTEKTADQFHRDVATLGC 125 Query: 117 LAPTHQPRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 L PT +PRAT + MI LIQ++I GHAY A E++FDT+S+P+YG S+R Sbjct: 126 LEPTVEPRATEFVEPRADGKADMITLIQSLIKRGHAYAAAGEVLFDTASMPDYGQLSKRN 185 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +DEQ+ G RV HKKNP DF+LWK S+P EPGW+SPWGRGRPGWHIECSAMS+ YLG+ Sbjct: 186 LDEQQAGARVAVDAHKKNPGDFVLWKLSSPEEPGWQSPWGRGRPGWHIECSAMSAAYLGE 245 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 VFDIHGGGLDLIFPHHENEIAQS CA AN+W+HNGFL +EG+KMSKS GNF +I+ Sbjct: 246 VFDIHGGGLDLIFPHHENEIAQSRCAHGTSVMANVWMHNGFLQVEGQKMSKSLGNFYSIH 305 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKGI 346 ELLET+ FGGRSWP V+RLAMLMTHYREPIDF+V++L EAE L KW + + + G Sbjct: 306 ELLETETFGGRSWPGEVLRLAMLMTHYREPIDFSVRKLEEAENTLRKWKRAADLAPAAGQ 365 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS 406 + V+ AL +DL T +A Q L +LA E+ ++ AS LG +V ++++ Sbjct: 366 LPVEVIDALSDDLATYAAFQVLTQLAGEAADGNEAAAALKASLLFLGFDVASADIDED-- 423 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + K + RL L+ K ++ AD IR +L ++G L+D K+P G+R+T W+ K Sbjct: 424 -GVAKAIANRLALIAAKNWTEADRIRDELLAQGVQLKDGKDPVTGERITTWEVK 476 >gi|260462295|ref|ZP_05810503.1| cysteinyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] gi|259031789|gb|EEW33057.1| cysteinyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 251/479 (52%), Positives = 329/479 (68%), Gaps = 24/479 (5%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++YNTL R +F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 KGLRLYNTLTRTKADFTPIDALNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPS------IPINDAISIITSKNTQQFVKDTTRLAC 116 E VTYVRNITD+DDKI RA ++ + +N+AI +T K QF +D L C Sbjct: 66 ETHVTYVRNITDVDDKINARALRDFGDEISAGKLSLNEAIRRVTEKTADQFHRDVATLGC 125 Query: 117 LAPTHQPRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 L PT +PRAT + MI LIQ++I GHAY A E++FDT+S+P+YG S+R Sbjct: 126 LEPTVEPRATEFVEPRADGKADMISLIQSLIERGHAYVAAGEVLFDTASMPDYGQLSKRN 185 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +DEQ+ G R+ HKKNP DF+LWK S+P EPGW SPWGRGRPGWHIECSAMS+ YLG+ Sbjct: 186 LDEQQAGARIAVDAHKKNPGDFVLWKLSSPEEPGWRSPWGRGRPGWHIECSAMSAAYLGE 245 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 VFDIHGGGLDLIFPHHENEIAQS CA + AN+W+HNGFL +EG+KMSKS GNF +I+ Sbjct: 246 VFDIHGGGLDLIFPHHENEIAQSRCAHGTDVMANVWMHNGFLQVEGQKMSKSLGNFYSIH 305 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKGI 346 ELLET+ FGGR+WP V+RLAMLMTHYREPIDF++++L EAE L KW + + + G Sbjct: 306 ELLETETFGGRNWPGEVLRLAMLMTHYREPIDFSMRKLEEAENTLRKWKRAADLAPTAGQ 365 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNASAHILGIEVCKEHL 401 + V+ AL +DL T +A Q L +LA E+++ + A+ LG ++ + Sbjct: 366 LPAKVVEALSDDLATYAAFQQLTQLAGEASEVEGHGENAAAASLKAALLFLGFDIGAARV 425 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ + + + RL L+ K ++ AD IR L ++G L+D K+P G+R+T W+ K Sbjct: 426 DE---AEVARSIARRLELIAAKNWAEADRIRDDLLAQGVQLKDGKDPVTGERVTTWEVK 481 >gi|328544357|ref|YP_004304466.1| Cysteine tRNA synthetase (Cysteine--tRNA ligase) [polymorphum gilvum SL003B-26A1] gi|326414099|gb|ADZ71162.1| Cysteine tRNA synthetase (Cysteine--tRNA ligase) [Polymorphum gilvum SL003B-26A1] Length = 514 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 257/508 (50%), Positives = 323/508 (63%), Gaps = 53/508 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++YNTL R +F IDP+N+RMYVCGPTVYDFAHIGNARP IVFDVLYRLLR+ YG Sbjct: 9 KGLRLYNTLTRAKQDFVPIDPANVRMYVCGPTVYDFAHIGNARPAIVFDVLYRLLRHLYG 68 Query: 63 EKCVTYVRNITDIDDKIIERARQ------EHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 VTYVRNITD+DDKI RA + E + +NDAI+ +T K Q+ D + L C Sbjct: 69 ADRVTYVRNITDVDDKINARALRDFGPEIEAGRMSLNDAIARVTEKTADQYHSDVSALGC 128 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L PTH+PRAT HI MI +I +I GHAYEA E++FD +S+P YG S+R +DEQ G Sbjct: 129 LPPTHEPRATEHIEGMIVMIGTLIERGHAYEAAGEVLFDVASMPAYGGLSKRNLDEQIAG 188 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 RV HKKNP DF+LWK+S+ EPGW SPWGRGRPGWHIECS MS H+LGKVFDIHGG Sbjct: 189 ARVAVDSHKKNPGDFVLWKQSSAEEPGWGSPWGRGRPGWHIECSVMSEHHLGKVFDIHGG 248 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 GLDLIFPHHENEIAQSCCA +K AN W+HNGF+ +EGRKMSKS GNF+TI++LL T Sbjct: 249 GLDLIFPHHENEIAQSCCAHGTDKMANYWLHNGFVQVEGRKMSKSEGNFVTIHDLLHTDT 308 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKG 345 FGGR WP V+RLAMLMTHYREPIDF+V+RL EA L+ W + + Sbjct: 309 FGGRKWPGEVLRLAMLMTHYREPIDFSVKRLEEANANLTNWLRQIDEHVLSRNSPTAYSA 368 Query: 346 IIDPA-----------VLSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFN 386 I+D A + L +DL + I LH ++ + + D++ I Sbjct: 369 ILDAAQNNDQNDNLAISVEVLSDDLAMPNVIAQLHGMSTDISLGVRSPRSLAWDMMGILG 428 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLIL--------------LKMKKFSSADYIR 432 I+ EV + K + + + ERL + L +KF+ AD IR Sbjct: 429 FLG-IIDAEVLRRQ--KVEPEGLSQRIAERLAIQDAADAAKAAGDKDLMKQKFAEADRIR 485 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQK 460 L ++G +L+D K+P GQR+T W+ K Sbjct: 486 ADLAAEGILLKDGKDPQTGQRVTTWEVK 513 >gi|92117041|ref|YP_576770.1| cysteinyl-tRNA synthetase [Nitrobacter hamburgensis X14] gi|123083715|sp|Q1QN87|SYC_NITHX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91799935|gb|ABE62310.1| cysteinyl-tRNA synthetase [Nitrobacter hamburgensis X14] Length = 482 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/479 (51%), Positives = 320/479 (66%), Gaps = 25/479 (5%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL ++ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLL++ YG Sbjct: 2 ELRLYDTLTKEKRAFIPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLQHIYGT 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI +RA ++ P +P+N+AI +T K +QF D L CL PTHQP Sbjct: 62 DHVTYVRNITDVDDKINDRAARDFPGLPLNEAIRKVTEKTAEQFQADVAALGCLPPTHQP 121 Query: 124 RATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 RAT + M+ LI+ +I GHAYEA E++FD S+P+YG+ S R+++EQK G Sbjct: 122 RATEFVLPRDDGRADMVTLIKQLIARGHAYEAGGEVLFDVQSMPDYGALSGRRLEEQKAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 RV HK+NPADF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHGG Sbjct: 182 ARVAVDAHKRNPADFVLWKLSSENEPGWDSPWGRGRPGWHIECSAMSAAYLGDVFDIHGG 241 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 GLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF TINELL T+K Sbjct: 242 GLDLIFPHHENEIAQSRCAHGTHTMANYWMHNGFLQVEGEKMSKSLGNFFTINELLTTEK 301 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVL 352 FGGR WP V+RLAML THYR PID+TV L E++ +L W + + G +D V Sbjct: 302 FGGRKWPGEVLRLAMLKTHYRSPIDWTVDALEESKRILDSWYDIVGDDTEAIGEVDREVS 361 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPI-----FNASAHILGI--EVCKEHLNKNI 405 + L +DLNT +A+ LH +A L I SA +LG+ +E+L + Sbjct: 362 AFLGDDLNTSAAVTRLHAIAASRIGKSGQLQIDAKRKLKVSAVMLGLLGRTKREYLETDP 421 Query: 406 SI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + L+ +R K F +D IR +L + G +L+D K+ D G+ T W+ Sbjct: 422 QVILVDSNLVAHLLSDRAAARARKDFKESDRIRDELAAMGVVLKDGKDAD-GKPETTWE 479 >gi|75675421|ref|YP_317842.1| cysteinyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] gi|109894914|sp|Q3STA1|SYC_NITWN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|74420291|gb|ABA04490.1| cysteinyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] Length = 477 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 247/476 (51%), Positives = 317/476 (66%), Gaps = 26/476 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL R+ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG+ Sbjct: 3 LRLYDTLTRRKRAFTPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGDD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI +RA ++ P +P+N+AI +T K QF D L CL PTHQPR Sbjct: 63 HVTYARNITDVDDKINDRAARDFPDLPLNEAIRKVTEKTAAQFQADVAALGCLPPTHQPR 122 Query: 125 ATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT + M+ I+ +I GHAYEA E++FD S+P+YG+ S R++DEQK G Sbjct: 123 ATEFVLPRTDGKTDMVTFIKQLIARGHAYEAGGEVLFDVRSMPDYGALSGRRLDEQKAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 RV HK+NPADF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHGGG Sbjct: 183 RVAVDAHKRNPADFVLWKLSSENEPGWDSPWGRGRPGWHIECSAMSTAYLGDVFDIHGGG 242 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL T+KF Sbjct: 243 LDLIFPHHENEIAQSRCAHGTHAMANYWMHNGFLQVEGEKMSKSLGNFVTINELLTTEKF 302 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTS 343 GGR WP V+RL ML THYR+PID+T++ L E+E +L + P S Sbjct: 303 GGRKWPGEVLRLNMLRTHYRQPIDWTIKALEESETILRRVCGRIKQFEYARRGMPTKERS 362 Query: 344 KGI-IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 + + P +L AL +DLNT + + +L+ + +H LL I +L Sbjct: 363 VQLNLPPEILEALVDDLNTPLMLSRIGELSYDDAFDHALLSI---GIDVLSYARWLRSQE 419 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + S +++LV RL K F +D IR +L + G +L+D K+ D G+ +T W+ Sbjct: 420 QYASSNVDELVVARLEARMRKDFKESDRIRDELAAMGVVLKDGKDAD-GKPVTTWE 474 >gi|90420879|ref|ZP_01228784.1| cysteine--tRNA ligase [Aurantimonas manganoxydans SI85-9A1] gi|90334854|gb|EAS48626.1| cysteine--tRNA ligase [Aurantimonas manganoxydans SI85-9A1] Length = 494 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/495 (49%), Positives = 322/495 (65%), Gaps = 44/495 (8%) Query: 3 KKIKIYNTLERKITEFQAID---------PSNIRMYVCGPTVYDFAHIGNARPMIVFDVL 53 + + ++NT++R EF+ +D ++RMYVCGPTVYD+AHIGNARP+IVFDVL Sbjct: 6 RGLTLWNTMKRAKEEFRPLDWQDPGKAEAGRHVRMYVCGPTVYDYAHIGNARPVIVFDVL 65 Query: 54 YRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 YRLLR+ YG VTYVRNITD+DDKI RA +++P +P+N AI+ +T QF D Sbjct: 66 YRLLRHLYGADHVTYVRNITDVDDKINRRAARDYPDLPLNAAIAKVTQATADQFHADVAA 125 Query: 114 LACLAPTHQPRATNHIP------QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 L CL P H+PRAT+ + M+ +I +I GHAYEA E++FD +S+ +YG S Sbjct: 126 LGCLPPDHEPRATDFVTGRSDGHDMVSMIATLIEKGHAYEAGGEVLFDVTSMADYGQLSN 185 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR-------------GRPG 214 RK+DEQ+ G R+ + HK+NP DF+LWK S+ EPGWE+PWGR GRPG Sbjct: 186 RKLDEQRAGARIAVEGHKRNPGDFVLWKLSSEGEPGWEAPWGREAWEASGRTGMPKGRPG 245 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECSAMS YLG+ FDIHGGGLDLIFPHHENEIAQS CA A +W+HNG+L LE Sbjct: 246 WHIECSAMSEAYLGQTFDIHGGGLDLIFPHHENEIAQSRCAHGTAAMAQVWMHNGYLQLE 305 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 GRKMSKS+GNF+TI++LL T +FG RSW V+RLAMLMT YREPIDF+V+RL EAE L Sbjct: 306 GRKMSKSDGNFVTIHDLLHTDRFGRRSWAGAVLRLAMLMTQYREPIDFSVKRLEEAEEAL 365 Query: 335 SKWPQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL 392 + W + P+ L+AL +DL + +AI LH L + AS ++ Sbjct: 366 AGWARAVADVAPSAPSERFLAALSDDLASAAAIAELHALRKGDPA------ALRASLDLI 419 Query: 393 GIEVCKEHLNKNISI-------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 GI+V +L + AI + ERL LL+ K F+ AD IR +L ++G L+D Sbjct: 420 GIDVAG-YLAATSDLAAPVPADAIAARIAERLDLLRGKNFAEADRIRDELLAEGIQLKDG 478 Query: 446 KNPDNGQRMTRWKQK 460 K+PD G+R+T W+ K Sbjct: 479 KDPDTGERITTWEMK 493 >gi|110633319|ref|YP_673527.1| cysteinyl-tRNA synthetase [Mesorhizobium sp. BNC1] gi|110284303|gb|ABG62362.1| cysteinyl-tRNA synthetase [Chelativorans sp. BNC1] Length = 506 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/491 (50%), Positives = 325/491 (66%), Gaps = 33/491 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+YNTL R+ EF +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 15 KALKLYNTLTRRDEEFVPLDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRQLYG 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPS------IPINDAISIITSKNTQQFVKDTTRLAC 116 + VTYVRNITD+DDKI RA ++ + +N+AI +T + QF D L C Sbjct: 75 DDHVTYVRNITDVDDKINARALRDFGEDITAGRLTLNEAIRRVTERTAAQFHADVAALGC 134 Query: 117 LAPTHQPRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 LAPTH+PRAT + M LIQ +I GHAY A EI+FDT+S+P+YG S+R+ Sbjct: 135 LAPTHEPRATEFVLPRTDGKADMASLIQTLIDRGHAYAAKGEILFDTASMPDYGQLSKRR 194 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSA 221 +++Q+ G RV HK+NP+DF+LWK S+ EPGWE + RGRPGWHIECSA Sbjct: 195 LEDQQAGARVAVDPHKRNPSDFVLWKESSAEEPGWEGRFTFEGKPLVIRGRPGWHIECSA 254 Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS+ YLG+VFDIHGGGLDLIFPHHENEIAQS CA AN W+HNGF+ +EG+KM+KS Sbjct: 255 MSAAYLGEVFDIHGGGLDLIFPHHENEIAQSRCAHGTPVMANYWLHNGFVQVEGKKMAKS 314 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT- 340 GNF+TI++LL T+ FGGR WP V+RLA+LMTHYREP+DF++++L EAE +L W + Sbjct: 315 EGNFVTIHDLLATENFGGRKWPGEVLRLAILMTHYREPLDFSLRKLEEAEAVLDGWYRVV 374 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEV- 396 + + AV AL +DL T +AI LH L ++ + + A+A +LG+ Sbjct: 375 GDAKHQEGDSGAVRRALLDDLGTPAAITVLHDLRAQAARGSEAAKADLKANAVLLGLLTQ 434 Query: 397 -------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 K A+E+ V RL LL+ K F AD IR++L +G L DYK+P+ Sbjct: 435 SQDQWFSGKAADAAIDEAAVEERVAARLSLLRAKNFPEADRIREELSGRGIQLMDYKDPE 494 Query: 450 NGQRMTRWKQK 460 G+R T+W+ K Sbjct: 495 TGERRTKWEVK 505 >gi|187631655|sp|Q11JR3|SYC_MESSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 497 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/491 (50%), Positives = 325/491 (66%), Gaps = 33/491 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+YNTL R+ EF +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 6 KALKLYNTLTRRDEEFVPLDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRQLYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPS------IPINDAISIITSKNTQQFVKDTTRLAC 116 + VTYVRNITD+DDKI RA ++ + +N+AI +T + QF D L C Sbjct: 66 DDHVTYVRNITDVDDKINARALRDFGEDITAGRLTLNEAIRRVTERTAAQFHADVAALGC 125 Query: 117 LAPTHQPRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 LAPTH+PRAT + M LIQ +I GHAY A EI+FDT+S+P+YG S+R+ Sbjct: 126 LAPTHEPRATEFVLPRTDGKADMASLIQTLIDRGHAYAAKGEILFDTASMPDYGQLSKRR 185 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSA 221 +++Q+ G RV HK+NP+DF+LWK S+ EPGWE + RGRPGWHIECSA Sbjct: 186 LEDQQAGARVAVDPHKRNPSDFVLWKESSAEEPGWEGRFTFEGKPLVIRGRPGWHIECSA 245 Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS+ YLG+VFDIHGGGLDLIFPHHENEIAQS CA AN W+HNGF+ +EG+KM+KS Sbjct: 246 MSAAYLGEVFDIHGGGLDLIFPHHENEIAQSRCAHGTPVMANYWLHNGFVQVEGKKMAKS 305 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT- 340 GNF+TI++LL T+ FGGR WP V+RLA+LMTHYREP+DF++++L EAE +L W + Sbjct: 306 EGNFVTIHDLLATENFGGRKWPGEVLRLAILMTHYREPLDFSLRKLEEAEAVLDGWYRVV 365 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEV- 396 + + AV AL +DL T +AI LH L ++ + + A+A +LG+ Sbjct: 366 GDAKHQEGDSGAVRRALLDDLGTPAAITVLHDLRAQAARGSEAAKADLKANAVLLGLLTQ 425 Query: 397 -------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 K A+E+ V RL LL+ K F AD IR++L +G L DYK+P+ Sbjct: 426 SQDQWFSGKAADAAIDEAAVEERVAARLSLLRAKNFPEADRIREELSGRGIQLMDYKDPE 485 Query: 450 NGQRMTRWKQK 460 G+R T+W+ K Sbjct: 486 TGERRTKWEVK 496 >gi|163760568|ref|ZP_02167649.1| cysteinyl-tRNA synthetase [Hoeflea phototrophica DFL-43] gi|162282183|gb|EDQ32473.1| cysteinyl-tRNA synthetase [Hoeflea phototrophica DFL-43] Length = 505 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 249/502 (49%), Positives = 321/502 (63%), Gaps = 45/502 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K +NTL R EFQ ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 3 ELKFWNTLTRVKEEFQPIDKDNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI RA +++P +P+N+AI+ +T K +F KD L CL PTH+P Sbjct: 63 DHVTYVRNITDVDDKINARALRDYPDLPLNEAIAKVTEKTANRFHKDAAALGCLEPTHEP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 RAT HI M+ +IQ +I G+AY E++F SS+P+YG S RK ++Q+ G R+ Sbjct: 123 RATAHIDGMVKMIQTLIDKGNAYVTSGREGREVLFAVSSMPDYGKLSNRKPEDQQAGARI 182 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSAMSSHYLGKVF 231 + HK+NPADF+LWK S EPGW+ + GRPGWHIECS MS H+LG F Sbjct: 183 AVEDHKRNPADFVLWKESASDEPGWDGVFADGGQTISIHGRPGWHIECSVMSEHHLGATF 242 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGGLDLIFPHHENEIAQSCCA ++ AN+W+HNGFL +EG+KMSKS+GNF+TI EL Sbjct: 243 DIHGGGLDLIFPHHENEIAQSCCAHGNDRMANLWMHNGFLQVEGKKMSKSDGNFVTIAEL 302 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----- 346 LET KFGGR WP V+RLAMLMTHYREPIDF+V+RL EA I LS W +G+ Sbjct: 303 LETDKFGGRKWPGEVLRLAMLMTHYREPIDFSVKRLEEANISLSNWLGPHARRGVPEDGS 362 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL--------------------LPIFN 386 + V+ AL +DL+ +A + + ES K DL L + Sbjct: 363 VSKEVVRALSDDLDFSAAKLVIDFMLAESRKVTDLDQESIGKTKLRNDLAATLVWLGLAK 422 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKL--------VQERLILLKMKKFSSADYIRKQLESK 438 K+ L + A+ L V ERL + K ++ AD IR +L ++ Sbjct: 423 QDEDFAVARANKQGLRAVVEAALVGLKASDVDSRVNERLAFIAAKNWAEADRIRDELLAQ 482 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 G L+D K+P+ G+R+T W+ K Sbjct: 483 GIQLKDGKDPETGERVTTWEVK 504 >gi|85715405|ref|ZP_01046387.1| cysteinyl-tRNA synthetase [Nitrobacter sp. Nb-311A] gi|85697826|gb|EAQ35701.1| cysteinyl-tRNA synthetase [Nitrobacter sp. Nb-311A] Length = 477 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 244/482 (50%), Positives = 317/482 (65%), Gaps = 36/482 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL ++ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 2 ELRLYDTLTKQKRVFDPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRNLYGA 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI +RA ++ P + +N+AI +T K QF D L CL PTHQP Sbjct: 62 DHVTYVRNITDVDDKINDRAARDFPGLSLNEAIRKVTEKTAAQFQADVAALGCLPPTHQP 121 Query: 124 RATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 RAT + M+ I+ +I GHAY+A E++FD S+P+YG+ S R+++EQK G Sbjct: 122 RATEFVLPRADGKTDMVTFIKQLIARGHAYKAGGEVLFDVRSMPDYGALSGRRLEEQKAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 R+ HK+NPADF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG+VFDIHGG Sbjct: 182 ARIAVDEHKRNPADFVLWKLSSENEPGWDSPWGRGRPGWHIECSAMSAAYLGEVFDIHGG 241 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 GLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL T K Sbjct: 242 GLDLIFPHHENEIAQSRCAHGSHAMANYWMHNGFLQVEGEKMSKSLGNFVTINELLTTGK 301 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------WPQTS 341 FGGR WP V+RL ML THYR+PID+T + L E+E +L + + Sbjct: 302 FGGRKWPGEVLRLNMLRTHYRQPIDWTTKALEESETILRRICGRIKQFDDARRGMAMKER 361 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK--- 398 + + + P +L AL +DLNT I + +L NHD F+ + +GI+V Sbjct: 362 SGQPKLSPEILEALVDDLNTPLMISRVGEL------NHD--DAFDQALLSIGIDVFSYAR 413 Query: 399 --EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + +++LV RL K K F +D IR +L + G +L+D K+ D G+ +T Sbjct: 414 WLRSQEQQAGSNVDELVAARLEARKRKDFKESDRIRDELAAMGVVLKDSKDAD-GKPVTT 472 Query: 457 WK 458 W+ Sbjct: 473 WE 474 >gi|299133613|ref|ZP_07026807.1| cysteinyl-tRNA synthetase [Afipia sp. 1NLS2] gi|298591449|gb|EFI51650.1| cysteinyl-tRNA synthetase [Afipia sp. 1NLS2] Length = 464 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/461 (50%), Positives = 308/461 (66%), Gaps = 25/461 (5%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL + F+ IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 2 ELRLYDTLTKDKRAFKPIDPRNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHIYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRNITD+DDKI +RA +++P +P+N+AI +T K QF D L CL PT +P Sbjct: 62 QHVTYVRNITDVDDKINDRALRDYPGLPLNEAIRKVTEKTATQFHADVDALGCLKPTVEP 121 Query: 124 RATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 RAT+ + M+ LI+ +I GHAYEAN E++FDT+S+P+YG S R++DEQ+ G Sbjct: 122 RATDFVLPRADGKADMVSLIKTLIDRGHAYEANGEVLFDTASMPDYGKLSGRRLDEQQAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 R+ HKK+PADF+LWK+S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHGG Sbjct: 182 ARIAVDAHKKHPADFVLWKQSSADEPGWDSPWGRGRPGWHIECSAMSAAYLGDVFDIHGG 241 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 GLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL Sbjct: 242 GLDLIFPHHENEIAQSRCAHGTHAMANYWLHNGFLQVEGEKMSKSLGNFVTINELL---- 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--VLSA 354 + WP V+RL ML THYR PID+TV+ L E+ +L W T+ PA VL Sbjct: 298 ---KDWPGEVVRLNMLKTHYRSPIDWTVKGLEESAKVLDDWYATAGDIKGSAPAGTVLDT 354 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL-LPIFNASAHILGI--------EVCKEHLNKNI 405 L +DLNT + ALH L ++ + + F +S +LG + K+ + Sbjct: 355 LADDLNTAQTVAALHGLRHQAERGGEAERNEFASSLRLLGFLAETRADWDARKQEASGVD 414 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + L+ +R K + +D IR +L + G ++D K Sbjct: 415 AAQVSALIADRTAARARKDWKESDRIRDELAAMGVAIKDSK 455 >gi|114704768|ref|ZP_01437676.1| cysteinyl-tRNA synthetase [Fulvimarina pelagi HTCC2506] gi|114539553|gb|EAU42673.1| cysteinyl-tRNA synthetase [Fulvimarina pelagi HTCC2506] Length = 559 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 250/555 (45%), Positives = 330/555 (59%), Gaps = 99/555 (17%) Query: 3 KKIKIYNTLERKITEFQAID---------PSNIRMYVCGPTVYDFAHIGNARPMIVFDVL 53 + +++ NT+ R+ +F +D +RMYVCGPTVYD+AHIGNARPMIVFDVL Sbjct: 6 RGLRLSNTMTRQKEDFVPLDWRDAEIPEAEKRVRMYVCGPTVYDYAHIGNARPMIVFDVL 65 Query: 54 YRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 +RLLR+ YGE V Y RNITD+DDKI RA ++ P +P+NDAI +T++ T+QF D Sbjct: 66 FRLLRHLYGEDHVVYARNITDVDDKINARAARDFPDMPLNDAIRRVTTRTTEQFHTDIAA 125 Query: 114 LACLAPTHQPRATNHIP------QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 L CL PT +PRAT+++ M+ +I+ +I GHAYEA E++FD +S+P+YGS S+ Sbjct: 126 LCCLPPTVEPRATDYVSGHANGHDMVAMIETLIEKGHAYEAGGEVLFDVTSMPDYGSLSK 185 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 R++DEQ+ G RV HK+NP DF+LWK S EPGW SPWGRGRPGWHIECS MS +L Sbjct: 186 RRLDEQQAGARVAVDSHKRNPGDFVLWKLSDENEPGWGSPWGRGRPGWHIECSVMSEAHL 245 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 GK FDIHGGGLDLIFPHHENEIAQS CA A +W+HNG++ +EGRKMSKS GNFIT Sbjct: 246 GKTFDIHGGGLDLIFPHHENEIAQSRCAHGTASMAEVWMHNGYVQVEGRKMSKSEGNFIT 305 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I++LL T+KFGGR WP V+RLAMLMTHYREPIDF+V+RL EA LS+ Q + I+ Sbjct: 306 IHDLLHTEKFGGRKWPGEVLRLAMLMTHYREPIDFSVKRLEEAAEELSRLAQKFDYEEIL 365 Query: 348 D--------------PAVLSALYNDLN--------------------------------- 360 + P + AL +DLN Sbjct: 366 NNWSLRKELELRDFVPGFVEALEDDLNISLALRYVREAVSNVRKSEFGKVTQIIASLEFL 425 Query: 361 --------------TVSAIQALHKLARESTKNHDLLPI----------FNASAHILGIEV 396 T+S + H RE K +L I F AS+ L E Sbjct: 426 GIFRPEIIGVYSTGTLSIGMSPHSALREKNKLLNLRAIAANTSIRDAQFEASS--LSNEQ 483 Query: 397 CKEHLNKNISIAIEKLVQ------ERLILLKM-----KKFSSADYIRKQLESKGFILEDY 445 K +++ + +EK Q +RL+ ++ K ++ AD IR +L KG L+D Sbjct: 484 LKYFVSERGIVHVEKTEQISELEIQRLVEQRLAFIGDKNWAEADRIRDELAEKGIQLKDS 543 Query: 446 KNPDNGQRMTRWKQK 460 K+P+ G+R+T W+ K Sbjct: 544 KDPETGERLTTWELK 558 >gi|209885639|ref|YP_002289496.1| cysteinyl-tRNA synthetase [Oligotropha carboxidovorans OM5] gi|226710846|sp|B6JHT8|SYC_OLICO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|209873835|gb|ACI93631.1| cysteinyl-tRNA synthetase [Oligotropha carboxidovorans OM5] Length = 464 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/463 (50%), Positives = 301/463 (65%), Gaps = 31/463 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+TL + F +DP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG+ Sbjct: 3 LKLYDTLTKDKRAFVPLDPRNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHIYGDS 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI +RA +++P +P+N+AI +T K QF D L CL PT +PR Sbjct: 63 HVTYVRNITDVDDKINDRALRDYPGLPLNEAIRKVTEKTATQFRADVDALGCLQPTVEPR 122 Query: 125 ATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT+ + M+ LI+ +I GHAYEAN E++FDT+S+P+YG S RK++EQ+ G Sbjct: 123 ATDFVLPRPDGKTDMVSLIKTLIDRGHAYEANGEVLFDTASMPDYGQLSGRKLEEQQAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 R+ HKK+ ADF+LWK+S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG+ FDIHGGG Sbjct: 183 RIAVDAHKKHAADFVLWKQSSADEPGWDSPWGRGRPGWHIECSAMSAAYLGETFDIHGGG 242 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL+ Sbjct: 243 LDLIFPHHENEIAQSRCAHGTHAMANYWLHNGFLQVEGEKMSKSLGNFVTINELLQ---- 298 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--VLSAL 355 WP V+RL ML THYR PID+T++ L E+ L W T+ PA V+ L Sbjct: 299 ---DWPGEVVRLNMLKTHYRSPIDWTLKGLEESAKALDDWYATAGDAAGSAPADTVMETL 355 Query: 356 YNDLNTVSAIQALHKLARESTKN----HDLLPIFNASAHILGI--------EVCKEHLNK 403 +DLNT + ALH L ++ K D L AS LG + K + Sbjct: 356 CDDLNTAQTVAALHGLRHQAEKGDAAQRDQLA---ASLRFLGFFSETKDAWDARKREASG 412 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + L+ +R K + +D IR +L + G ++D K Sbjct: 413 VDAAQVTALIADRTAARARKDWKESDRIRDELAAMGVAIKDSK 455 >gi|222148112|ref|YP_002549069.1| cysteinyl-tRNA synthetase [Agrobacterium vitis S4] gi|221735100|gb|ACM36063.1| cysteinyl-tRNA synthetase [Agrobacterium vitis S4] Length = 588 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/393 (56%), Positives = 279/393 (70%), Gaps = 16/393 (4%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +K+YNTL R +F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVLYRLLR+ Sbjct: 43 MAEGLKLYNTLTRSKVDFTPIDPKNVRMYVCGPTVYDFAHIGNARPVIVFDVLYRLLRHI 102 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE VTY RNITD+DDKI RA ++ P +P+N+AI+ +T K QF D L L PT Sbjct: 103 YGENHVTYARNITDVDDKINARALRDFPDLPLNEAIAKVTQKTADQFHADVAALGNLPPT 162 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT++I QMI +I+ +I GHAY A E++FDT S+ YG S+R +DEQ+ G R+ Sbjct: 163 IEPRATDNIQQMIDIIKTLIAKGHAYVAEGEVLFDTRSMAAYGQLSKRNLDEQQAGARIA 222 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + HKK+P DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG+VFDIHGGGLDL Sbjct: 223 VEAHKKHPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGEVFDIHGGGLDL 282 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQSCCA+ AN+W+HNGF+ +EGRKMSKS+GNF+TI++LL + FGGR Sbjct: 283 IFPHHENEIAQSCCANDTSVMANVWMHNGFVQVEGRKMSKSDGNFLTIDQLLRSDSFGGR 342 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------- 347 W V R AML THYR+PID+T+ +L ++ + + + + II Sbjct: 343 PWHGGVFRFAMLKTHYRQPIDWTLDKLQQSRNEIFSFIASCNAGLIISQINAKRSLGKAT 402 Query: 348 --DPAVLSALYNDLNTVSAIQALHKLARESTKN 378 D + AL +DLNT A+ L L RE+ K+ Sbjct: 403 EQDADFIKALCDDLNTPLALSILFGL-RENAKS 434 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++S AI+ LV+ RL +LK K F+ AD IR L +KG L+D K+ D G+R+T W+ K Sbjct: 531 DLSAAIDALVEMRLEMLKTKNFAEADKIRDDLLAKGIQLKDGKDKDTGERVTTWEVK 587 >gi|304392050|ref|ZP_07373992.1| cysteinyl-tRNA synthetase [Ahrensia sp. R2A130] gi|303296279|gb|EFL90637.1| cysteinyl-tRNA synthetase [Ahrensia sp. R2A130] Length = 500 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 240/497 (48%), Positives = 320/497 (64%), Gaps = 44/497 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YNTL R F IDP+N+RMYVCGPTVYD AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 QLTLYNTLTRSKEPFTPIDPNNVRMYVCGPTVYDHAHIGNARPVIVFDVLFRLLRHIYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKII+RAR++ P + +N AI+ +T T QF D L CL PT +P Sbjct: 63 DAVKYVRNITDVDDKIIDRARRDFPDLDLNAAIAKVTESTTAQFQADMKALGCLEPTVEP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +AT HI M+ +I +I G+AY A+ E++FD +S +YG S RK+D+Q+ G RV Sbjct: 123 KATEHIGGMVEMISTLIAKGNAYVASGAKGREVLFDVTSDDDYGVLSNRKLDDQQAGARV 182 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSAMSSHYLGKVF 231 + HK+NP DF+LWK S EPGW+ + GRPGWHIECSAMS +LG+ F Sbjct: 183 AVESHKRNPGDFVLWKESAADEPGWDGGFTSSSGGETIHGRPGWHIECSAMSKAHLGETF 242 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGGLDLIFPHHENEIAQSCCA+ ++ AN+W+HNG+L +EG+KMSKS+GNFIT+++L Sbjct: 243 DIHGGGLDLIFPHHENEIAQSCCANSTDRMANVWMHNGYLQVEGKKMSKSDGNFITVHDL 302 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------TST-SK 344 L T+K GGR WP V+RLA+LMTHYREP+DFTV+RL EA+ +L K + TST +K Sbjct: 303 LHTEKVGGRKWPGEVVRLAILMTHYREPLDFTVRRLEEADDILIKLNRIFDSLMTSTFAK 362 Query: 345 GIIDPA--------------VLSALYNDLNTVSAIQAL--------HKLARESTKNHDLL 382 I P + +L DLN + + L H L+ E K D L Sbjct: 363 AISRPPERAGTNSAYRTANRTILSLVEDLNFKAVLDFLIRELRVSYHNLSEE--KQSDWL 420 Query: 383 PIFNASAHILGIEVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 +LGI+ + ++ + I V+ R + K + AD IR +L ++G Sbjct: 421 DALARIFLMLGIKPAPQQTRNDVRDSQIAYAVRSRAEAIASKNWPVADRIRDELLAQGIQ 480 Query: 442 LEDYKNPDNGQRMTRWK 458 L+D K+P+ G+R T W+ Sbjct: 481 LKDGKDPETGERTTTWE 497 >gi|146341598|ref|YP_001206646.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. ORS278] gi|146194404|emb|CAL78429.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Bradyrhizobium sp. ORS278] Length = 469 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/472 (49%), Positives = 303/472 (64%), Gaps = 26/472 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R+ F +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG + Sbjct: 3 LRLYDTASREKRPFVPLDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRRIYGAE 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA +++P +P+N+AI +T QF DT L L PT +PR Sbjct: 63 HVTYVRNITDVDDKINARAARDYPGLPLNEAIRKVTEVTANQFHSDTAALGSLPPTFEPR 122 Query: 125 ATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT+ + M+ LI+ +I GHAYEA E++FDT S+P+YG+ S RK+++Q G Sbjct: 123 ATDFVLPRPDGKADMVTLIEQLIARGHAYEAGGEVLFDTRSMPDYGALSGRKLEDQLAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 RV HKKNPADF+LWK+S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHGGG Sbjct: 183 RVAVDAHKKNPADFVLWKQSSADEPGWDSPWGRGRPGWHIECSAMSAAYLGDVFDIHGGG 242 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDLIFPHHENEIAQS CA AN W+HN F+ +EG KMSKS GNF+TI +LL Sbjct: 243 LDLIFPHHENEIAQSRCAHGTSVMANYWLHNEFVQVEGAKMSKSLGNFVTIRDLLA---- 298 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPAVLSAL 355 WP V+RL ML HYR P D+TV+ L E+ L W + + +PA+++AL Sbjct: 299 ---DWPGEVLRLNMLKMHYRSPADWTVKGLEESAKTLDDWYRVAADAPGEQPEPAIINAL 355 Query: 356 YNDLNTVSAIQALHKL-ARESTKNHDLLPIFNASAHILGI--------EVCKEHLNKNIS 406 +D+NT I LH L AR ++ + F S G E K+ + Sbjct: 356 LDDINTPLMIAELHALRARAASGSEVDRAAFAGSLRYFGFLSETATLWEARKQQAKGVDA 415 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +E L+ ER K F +D +R +L + G +L+D K D G+ +T W+ Sbjct: 416 AEVEGLIAERTAARARKDFKESDRLRDELAAMGVVLKDGKGAD-GKPVTTWE 466 >gi|323138201|ref|ZP_08073273.1| cysteinyl-tRNA synthetase [Methylocystis sp. ATCC 49242] gi|322396453|gb|EFX98982.1| cysteinyl-tRNA synthetase [Methylocystis sp. ATCC 49242] Length = 455 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/454 (50%), Positives = 300/454 (66%), Gaps = 15/454 (3%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + ++IYNTL R+ EF+ +D SN+RMYVCGPTVYD+AHIGNARP+IVFDVLYRLLR++ Sbjct: 1 MSQTLRIYNTLAREKQEFRPLDASNVRMYVCGPTVYDYAHIGNARPLIVFDVLYRLLRHH 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTYVRNITD+DDKI RA + SI +T + + F +D L CL PT Sbjct: 61 YGADHVTYVRNITDVDDKINARAAERGISI------RELTEETNRVFQEDVRALGCLEPT 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 QPRAT HI +MI +I+ +I HAY A+ ++FD S+ +YG SRR +DE G RV Sbjct: 115 VQPRATEHIAEMISIIERLIASRHAYAADGHVLFDVPSMKDYGRLSRRSLDEMLAGARVD 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K+ DF+LWK S EPGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGG+DL Sbjct: 175 VAPYKRGDMDFVLWKPSKENEPGWDSPWGRGRPGWHIECSAMSWKHLGETFDIHGGGIDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA + AN W+HNGFL +EG KMSKS GNF+TI+ELL T+KFGGR Sbjct: 235 VFPHHENEIAQSRCAFDHDVMANYWMHNGFLQVEGEKMSKSLGNFVTIHELLHTEKFGGR 294 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTSTSKGIIDPAVLSA 354 WP V+RLAML THYR+PID+TV+ L EAE L +W +T+ + A Sbjct: 295 KWPGEVLRLAMLRTHYRQPIDWTVKALEEAETSLRRWAEFIEAGETTGDSSDFFGQFVGA 354 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEVCKEHLNKNISIAIEKLV 413 L +DLNT A+ LH + + L+ + +A +++ IE +E + AI L+ Sbjct: 355 LKDDLNTPLAMSFLHSVFDPRLLDDALMLVGIDARSYVQWIE--RETRRGVDAAAIGALI 412 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 RL K ++ +D IR +L + G L+D K+ Sbjct: 413 NARLAARAAKNWAESDRIRDELAAMGIALKDNKD 446 >gi|192290599|ref|YP_001991204.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] gi|229558783|sp|B3QCS4|SYC_RHOPT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|192284348|gb|ACF00729.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] Length = 491 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 234/488 (47%), Positives = 310/488 (63%), Gaps = 34/488 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL R F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 2 ELRLYDTLTRDKRPFTPIDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT +P Sbjct: 62 AHVKYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------IPNYGSFSRRKIDEQKMG 176 RAT HI +M +I+ ++ G AY + ++F S+ +P YGS + R +DE G Sbjct: 122 RATEHIGEMRSIIEKLVAGGFAYVEQDHVLFSPSAMNAANGVLPRYGSLANRSLDEMIAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDI 233 RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FDI Sbjct: 182 ARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATPGRPGWHIECSAMSWKHLGETFDI 241 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL+FPHHENE+AQSCCA ++ A W+HNGFL +EG KMSKS GNFITI ELL Sbjct: 242 HGGGIDLVFPHHENEVAQSCCAFHTKRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELLA 301 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDP 349 T KFGGRSW +RLAML THYR+PID+TV L EA+ ++K+ +T K + P Sbjct: 302 TNKFGGRSWDGATLRLAMLKTHYRQPIDWTVDALEEAQKRVAKYRRTLERFRGGKNVEVP 361 Query: 350 -AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---------------FNASAHILG 393 V+SAL +DLNT +AI L L R + P AS +LG Sbjct: 362 HGVVSALSDDLNTHAAITELDALNRRANGVTHEGPTSEADALAANAIAADELRASLRLLG 421 Query: 394 IEVCKEH---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 I V E +N+ I++L+ R K + +D IR +L + G +L+D K+ D Sbjct: 422 ISVASERSGAVNQIFDQNIQRLIAVRTAARANKDWKESDRIRDELAAMGVVLKDGKDAD- 480 Query: 451 GQRMTRWK 458 G+ +T W+ Sbjct: 481 GKPVTTWE 488 >gi|39935066|ref|NP_947342.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] gi|61216212|sp|Q6N8A7|SYC_RHOPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|39648917|emb|CAE27438.1| cysteine-tRNA ligase [Rhodopseudomonas palustris CGA009] Length = 463 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/467 (48%), Positives = 301/467 (64%), Gaps = 20/467 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL R F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 2 ELRLYDTLTRDKRPFTPIDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT +P Sbjct: 62 AHVKYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------IPNYGSFSRRKIDEQKMG 176 RAT HI +M +I+ ++ G AY + ++F S+ +P YGS + R +DE G Sbjct: 122 RATEHIGEMRSIIEKLVAGGFAYVEQDHVLFSPSAMNAANGVLPRYGSLANRSLDEMIAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDI 233 RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FDI Sbjct: 182 ARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATPGRPGWHIECSAMSWKHLGETFDI 241 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL+FPHHENE+AQSCCA E+ A W+HNGFL +EG KMSKS GNFITI ELL Sbjct: 242 HGGGIDLVFPHHENEVAQSCCAFHTERMAQTWMHNGFLQVEGEKMSKSLGNFITIRELLA 301 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-PAVL 352 T KFGGRSW +RLAML THYR+PID+TV L EAE + W + + V+ Sbjct: 302 TNKFGGRSWDGATLRLAMLKTHYRQPIDWTVDALHEAEKAILDWSDFAKDATPVRCDEVI 361 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE-VCKEHLNKNISIAIEK 411 +AL +DLNT I LH L R + + +LGI V + + ++ + Sbjct: 362 AALTDDLNTPKMIAELHALRRAGKADE-----LRGAMQLLGINPVVRAPV--DLDATAKS 414 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 L++ R K + +D IR +L + G +L+D K+ D G+ +T W+ Sbjct: 415 LIEARTAARANKDWKESDRIRDELAAMGVVLKDGKDAD-GKSVTTWE 460 >gi|115524011|ref|YP_780922.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] gi|122296629|sp|Q07Q42|SYC_RHOP5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115517958|gb|ABJ05942.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] Length = 463 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/467 (49%), Positives = 305/467 (65%), Gaps = 20/467 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL R+ F +DPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 2 ELRLYDTLSREKRTFTPLDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +RA ++ P +P+N+AI +T + +QF D L CL PT +P Sbjct: 62 AHVKYVRNITDVDDKINDRAARDFPGLPLNEAIRKVTEQTEKQFHDDVDALGCLRPTVEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------IPNYGSFSRRKIDEQKMG 176 RAT HI +M +I +I G AY A + ++F + +P YG+ + R +DE G Sbjct: 122 RATEHIGEMRDIIDRLIAGGFAYVAADHVLFSPQAMNAKDGVLPRYGALANRSLDEMIAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDI 233 RV +K++ DF+LWK S P EP W SP G +GRPGWHIECSAMS +LG+ FDI Sbjct: 182 ARVDVAPYKRDATDFVLWKPSKPGEPSWPSPGGIAVQGRPGWHIECSAMSWKHLGERFDI 241 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL+FPHHENE+AQSCCA E+ A W+HNGFL +EG KMSKS GNF+TI ELL Sbjct: 242 HGGGIDLVFPHHENEVAQSCCAFHTERMAETWMHNGFLQVEGEKMSKSLGNFVTIRELLA 301 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVL 352 T KFGG+ W V+RLAML THYR PID+TV+ L EAE + W + T + V+ Sbjct: 302 TDKFGGKRWDGAVLRLAMLKTHYRSPIDWTVEALHEAEKAIYDWSEFTKDATPAPCDEVI 361 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-EVCKEHLNKNISIAIEK 411 AL +DLNT I LH L R K +LL + +LGI V ++ + I + + Sbjct: 362 DALADDLNTPKMIAELHGL-RRVGKPAELL----GALQLLGIGRVFRQTI--EIDVNAQA 414 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 L++ R K F +D IR +L + G +L+D K+ D G+ +T W+ Sbjct: 415 LIEARTAARARKDFKESDRIRDELAAMGVVLKDGKDAD-GKPVTTWE 460 >gi|300023350|ref|YP_003755961.1| cysteinyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299525171|gb|ADJ23640.1| cysteinyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 469 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/470 (48%), Positives = 300/470 (63%), Gaps = 22/470 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF IDPSN+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG + Sbjct: 3 LKLYNTLTRQKAEFAPIDPSNVRMYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHVYGPE 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA ++ P +P+NDAI +T +QF +D L L PT +PR Sbjct: 63 HVTYVRNITDVDDKINARAARDFPDLPLNDAIRKVTEATEKQFHEDIAALGVLPPTFEPR 122 Query: 125 ATNHIPQ------MIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 AT +I + M+ LI+ ++ G+AY A + ++FD +S+P+YG S R +DE + G R Sbjct: 123 ATEYIRRDDGRETMVSLIEALVQRGNAYVAEDHVLFDVASMPDYGRLSNRSLDEMEAGAR 182 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHG 235 V +KK P DF+LWK S P EP W SP G GRPGWHIECSAM+ LG FDIHG Sbjct: 183 VEVAPYKKGPMDFVLWKPSKPGEPAWPSPCGIATPGRPGWHIECSAMAGALLGPEFDIHG 242 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHHENEIAQS CA AN+W+HNGFL +EG KMSKS GNF+TINELL Sbjct: 243 GGIDLTFPHHENEIAQSRCAHGTPFMANVWMHNGFLQVEGEKMSKSLGNFVTINELLSD- 301 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKGIIDPAV 351 WP V+R ML THYR+PID+T + L E++ +LS W ++ + + PA Sbjct: 302 -----GWPGEVLRFNMLRTHYRQPIDWTKKGLEESQKILSGWFSQNGLSTDDRTELSPAF 356 Query: 352 LSALYNDLNTVSAIQALHKL--ARESTKNHDLLPIFNASAHIL-GIEVCKEHLNKNISIA 408 L AL +DLNT AI LH A+++T+ L L + ++++ Sbjct: 357 LDALADDLNTPKAIAELHGFATAKDATRLGAALSFLGFDGATLKKADARAAETAQSVASK 416 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +E L+ RL K K F+ +D IR +L G L+D KN + G+ T W+ Sbjct: 417 VEPLIIARLDARKRKDFAESDRIRDELAKMGISLKDAKNKETGEIETTWE 466 >gi|316934832|ref|YP_004109814.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] gi|315602546|gb|ADU45081.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] Length = 463 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/467 (48%), Positives = 307/467 (65%), Gaps = 20/467 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL ++ F +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 2 ELRLYDTLTKEKRTFAPLDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT +P Sbjct: 62 GHVKYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------IPNYGSFSRRKIDEQKMG 176 RAT HI +M +I ++ G AY + ++F + +P YGS + R +DE G Sbjct: 122 RATEHIGEMRSIIDKLVAGGFAYVEQDHVLFSPGAMNAANGVLPRYGSLANRSLDEMIAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDI 233 RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FDI Sbjct: 182 ARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATPGRPGWHIECSAMSWKHLGETFDI 241 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL+FPHHENE+AQSCCA + A W+HNGFL +EG KMSKS GNFITI ELL Sbjct: 242 HGGGIDLVFPHHENEVAQSCCAFHTSRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELLA 301 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVL 352 T+KFGGRSW +RLAML THYR+PID+TV L EAE + W + T + V+ Sbjct: 302 TEKFGGRSWDGATLRLAMLKTHYRQPIDWTVDALHEAEKAILDWSEFTKDATPARCDEVI 361 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-EVCKEHLNKNISIAIEK 411 +AL +DLNT I LH L R + + +LL + +LGI V ++ + +I + Sbjct: 362 AALTDDLNTPKMIAELHAL-RRAGRAQELL----GALQLLGIGRVFRQSI--DIGVNARA 414 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 L++ R K + +D IR +L + G +L+D K+ +NG+ +T W+ Sbjct: 415 LIEARTAARANKDWKESDRIRDELAAMGVVLKDGKD-ENGKPVTTWE 460 >gi|254473467|ref|ZP_05086864.1| cysteinyl-tRNA synthetase [Pseudovibrio sp. JE062] gi|211957583|gb|EEA92786.1| cysteinyl-tRNA synthetase [Pseudovibrio sp. JE062] Length = 483 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/462 (49%), Positives = 289/462 (62%), Gaps = 28/462 (6%) Query: 18 FQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77 F +D SN+RMYVCGPTVYD+AHIGNARP++VFDVL RLLR YG+ VTYVRNITD+DD Sbjct: 25 FVPMDASNVRMYVCGPTVYDYAHIGNARPVVVFDVLARLLRQLYGKDHVTYVRNITDVDD 84 Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KI ERA +E SI +T K Q+ D L AP +PRAT HI +M +I+ Sbjct: 85 KINERAAREGISI------RELTEKTAGQYHADMEALGAQAPDIEPRATEHIEEMKVMIE 138 Query: 138 NIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS 197 ++ GHAY A+ ++F S+P YG S R +DE G RV +KK+P DF+LWK S Sbjct: 139 TLVDKGHAYVADEHVLFHVPSMPEYGKLSNRTLDEMVAGARVEVASYKKDPTDFVLWKPS 198 Query: 198 TPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC 254 EPGWESP G GRPGWHIECSAMS +LGKVFDIHGGG+DL FPHHENEIAQS C Sbjct: 199 KADEPGWESPCGIETPGRPGWHIECSAMSEKHLGKVFDIHGGGVDLTFPHHENEIAQSRC 258 Query: 255 ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 A AN+W+HNGFL +EG KMSKS GNF T+++LL+T++ GGR W IR A+L T Sbjct: 259 AHDTHAMANVWLHNGFLQVEGEKMSKSLGNFFTVHQLLDTEEGGGRKWSGQAIRYALLQT 318 Query: 315 HYREPIDFTVQRLTEAEILLSKWPQ-------TSTSKGIIDPAVLSALYNDLNTVSAIQA 367 YR+PIDFT + L E E L++W T+ G D AVL L +DLNT A A Sbjct: 319 QYRQPIDFTFKSLAEGEKQLTRWADLLKKHDVTAQENGTPDEAVLEGLKDDLNTPRAFAA 378 Query: 368 LHKLARES-TKNHDLLPIFNASAHILGI-----------EVCKEHLNKNISIAIEKLVQE 415 LHKLAR++ + D S LG E + ++ + +E+L+ + Sbjct: 379 LHKLARDARGGDADAAQKLANSIKFLGFDLESFSKAQSEEKAEADVSPELKAKVEELIAK 438 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 RL K+K F+ +D IR +L + G +L+D KN + G+ T W Sbjct: 439 RLEARKVKDFAESDRIRDELAADGIVLKDMKNKETGEIETTW 480 >gi|296447282|ref|ZP_06889211.1| cysteinyl-tRNA synthetase [Methylosinus trichosporium OB3b] gi|296255244|gb|EFH02342.1| cysteinyl-tRNA synthetase [Methylosinus trichosporium OB3b] Length = 485 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 231/475 (48%), Positives = 295/475 (62%), Gaps = 38/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF+ IDP+N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR YG + Sbjct: 8 LKLYNTLTRVKEEFRPIDPANVRMYVCGPTVYDYAHIGNARPLIVFDVLFRLLRQLYGAE 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA + SI +T F D L CL P+ QPR Sbjct: 68 HVTYVRNITDVDDKINARAAERGISI------RELTEGTNAIFQADVAALGCLPPSVQPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QMI L++ +I GHAY A+ ++FD S+ +YG SRR +DE G RV + Sbjct: 122 ATEHIAQMIALVEKLIASGHAYAADGHVLFDVPSMADYGRLSRRPLDEMIAGARVDVAPY 181 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ DF+LWK S EPGW+SPWGRGRPGWH+ECSAMS +LG+ FDIHGGG+DL+FPH Sbjct: 182 KRGDMDFVLWKPSKDSEPGWDSPWGRGRPGWHLECSAMSWKHLGETFDIHGGGIDLVFPH 241 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA E AN W+HNGFL +EG KMSKS GNF+TI+ELL T+ FGGR WP Sbjct: 242 HENEIAQTRCAFGHEVMANYWMHNGFLQVEGEKMSKSLGNFVTIHELLHTENFGGRKWPG 301 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLSA 354 V+RLAML THYR+PIDFTV+ L EAE L +W + G + A + Sbjct: 302 EVLRLAMLRTHYRQPIDFTVKALEEAERTLLRWRRFVELALSLDDDISDFGPLPSAFMEY 361 Query: 355 LYNDLNTVSAIQALHKLAR-----------ESTKNHDL-----------LPIFNASAHIL 392 L +DLNT +A+ +H+LAR EST + IL Sbjct: 362 LADDLNTPAALSRIHELARVGPTAALEWGEESTAASPVEQQIAAARLRAALSLLGLQTIL 421 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + +++ S I++L++ R K ++ +D IR L + G L+D K+ Sbjct: 422 DPAWQRSSVDEAESDKIKELIERRRTARATKNWAESDRIRDALAAMGVALKDNKD 476 >gi|91976542|ref|YP_569201.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] gi|123721921|sp|Q139D9|SYC_RHOPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91682998|gb|ABE39300.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] Length = 463 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/466 (47%), Positives = 297/466 (63%), Gaps = 20/466 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL ++ +F +DPS +RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 LRLYDTLTKEKRDFAPLDPSRVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGEN 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI +RA +++P +P+N++I +T + +QF D L CL PT +PR Sbjct: 63 HVKYVRNITDVDDKINDRAARDYPGLPLNESIRKVTEQTERQFHDDVDALGCLRPTVEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFD-------TSSIPNYGSFSRRKIDEQKMGT 177 AT HI +M +I ++ G AY A++ ++F S +P YG+ + R +DE G Sbjct: 123 ATEHIGEMRTIIDRLVEGGFAYVADDHVLFSPGAMNAADSVLPRYGALANRSLDEMIAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIH 234 RV +K++ DF+LWK S P EP W SP G +GRPGWHIECSAMS +LG+ FDIH Sbjct: 183 RVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATQGRPGWHIECSAMSWKHLGETFDIH 242 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL+FPHHENE+AQSCCA + A W+HNGFL +EG KMSKS GNF+TI ELL T Sbjct: 243 GGGIDLVFPHHENEVAQSCCAFHTSRMAQTWMHNGFLQVEGEKMSKSLGNFVTIRELLAT 302 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--TSKGIIDPAVL 352 +KFGGR W +RLAML THYR+PID+T L EAE + W + + G D V+ Sbjct: 303 EKFGGRKWDGATLRLAMLKTHYRQPIDWTADALHEAEKAIFDWSDFTKDATPGSCDD-VI 361 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKL 412 +AL +DLNT I LH L R + + +LGI ++ + L Sbjct: 362 AALTDDLNTPKMIAELHALRRAGKADE-----LCGAMELLGISPVVRG-TVDLDATAKSL 415 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + R K F +D IR +L + G ++D K+ D G+ +T W+ Sbjct: 416 IDARTAARARKDFKESDRIRDELAAMGIAIKDGKDSD-GKPVTTWE 460 >gi|86750485|ref|YP_486981.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] gi|109894930|sp|Q2IUP0|SYC_RHOP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86573513|gb|ABD08070.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] Length = 493 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/496 (46%), Positives = 307/496 (61%), Gaps = 50/496 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL ++ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 LRLYDTLTKEKRAFAPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGEN 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT +PR Sbjct: 63 HVTYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFD-------TSSIPNYGSFSRRKIDEQKMGT 177 AT HI +M +I ++ G AY A + ++F S +P YG+ + R +DE G Sbjct: 123 ATEHIGEMRTIIDRLVAGGFAYVAADHVLFSPAAMNAANSVLPRYGALANRSLDEMIAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIH 234 RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FDIH Sbjct: 183 RVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGITMEGRPGWHIECSAMSWKHLGETFDIH 242 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL+FPHHENE+AQSCCA + ++ A W+HNGFL +EG KMSKS GNFITI ELL T Sbjct: 243 GGGIDLVFPHHENEVAQSCCAFQTDRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELLAT 302 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---- 350 +KFGG SW ++R AM+ THYR PID+TV+ L E +L W + G + PA Sbjct: 303 EKFGGDSWVGEILRFAMIKTHYRSPIDWTVKALDEGHKVLWDWYR---DIGDVGPAQQLP 359 Query: 351 --VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN---------------------- 386 + L +DLN SAI +H L R+ K +LL N Sbjct: 360 GEFIDCLADDLNISSAIAFMHSL-RKDKKFAELLATMNFLGFSNAESVLARRPVGVRINL 418 Query: 387 ----ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 A A + +EV + L+K+ IE+ + R K F +D IR +L + G + Sbjct: 419 PPAHAEAAVGTVEVLAKPLSKS---EIEERIDARTAARARKDFKESDRIRDELAAMGIAI 475 Query: 443 EDYKNPDNGQRMTRWK 458 +D K+ D G+ +T W+ Sbjct: 476 KDGKDAD-GKPVTTWE 490 >gi|240850206|ref|YP_002971599.1| cysteinyl-tRNA synthetase [Bartonella grahamii as4aup] gi|240267329|gb|ACS50917.1| cysteinyl-tRNA synthetase [Bartonella grahamii as4aup] Length = 502 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/504 (46%), Positives = 318/504 (63%), Gaps = 51/504 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K+++ YNTL RK F IDP+ +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ YG Sbjct: 2 KELRFYNTLTRKKENFTPIDPTRVRLYVCGPTVYDYAHIGNARPVIVFDILFRLLRHVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI RA E+P++ +NDAI +T + QF +DT L CL PT Q Sbjct: 62 NEHVLYARNITDVDDKINARAVFEYPNLSLNDAIRQLTERTYCQFQQDTIALGCLLPTSQ 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRV 179 PRAT H+ +M LI+ ++ GHAY+A N I+F SSI P+YG+F+ R +DE + G R+ Sbjct: 122 PRATEHLEEMRSLIERLLEKGHAYKAENHILFSVSSIKNPPHYGAFANRSLDEMRAGARI 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL--------- 227 +K+ DF+LWK S EPGWESP G GRPGWHIECSAMS L Sbjct: 182 DVAAYKREEMDFVLWKPSVEGEPGWESPAGIPVLGRPGWHIECSAMSMAKLLAPYGGGLT 241 Query: 228 -----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 VFDIHGGGLDLIFPHHENEIAQSC A E+ AN W+HNGFL +EG+KMSKS Sbjct: 242 CDDPTANVFDIHGGGLDLIFPHHENEIAQSCSAFGTERMANFWMHNGFLQVEGKKMSKSF 301 Query: 283 GNFITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 GNFITI +LE +F G ++W R +ML THYREP+++T QRL ++ Sbjct: 302 GNFITIRSVLENNFLEFNGILIDEMKKNWAGLSARFSMLQTHYREPLNWTAQRLIQSSGE 361 Query: 334 LSKWPQTSTSKG-------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN 386 L +W + SK I+ ++ AL +DLNT A+ L K +E + L + N Sbjct: 362 LYRWYELLRSKKSEMENNEAINDTLIDALSDDLNTPKALTLLRKFYKEG----NALALSN 417 Query: 387 ASAHILGI-------EV-CKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 ++LG+ E+ C + K S I++ + ERL L+ K++ +AD IR +L Sbjct: 418 G-MNLLGLLRQEWIKEIDCPLFIKKTFLDSKFIDQRIAERLRLIHNKEWEAADTIRDELA 476 Query: 437 SKGFILEDYKNPDNGQRMTRWKQK 460 ++G +L+D K+P +G+R+T W+ K Sbjct: 477 AEGVLLKDSKDPQSGERITVWEIK 500 >gi|163868002|ref|YP_001609206.1| cysteinyl-tRNA synthetase [Bartonella tribocorum CIP 105476] gi|187629795|sp|A9IRQ9|SYC_BART1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|161017653|emb|CAK01211.1| Cysteinyl-tRNA synthetase [Bartonella tribocorum CIP 105476] Length = 503 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 236/506 (46%), Positives = 316/506 (62%), Gaps = 51/506 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K+++ YNTL RK F IDP+ +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MMKELRFYNTLTRKKENFIPIDPTKVRLYVCGPTVYDYAHIGNARPLIVFDILFRLLRHV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG V Y RNITD+DDKI RA E+P++P+N+AI +T + QF +DT L CL PT Sbjct: 61 YGSDHVLYARNITDVDDKINARAACEYPNLPLNEAIRQLTERTYFQFQQDTIALGCLLPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGT 177 QPRAT H+ +M LI+ ++ GHAY+A N I+F SSI P+YG+F+ R +DE + G Sbjct: 121 SQPRATEHLEEMRALIERLLEKGHAYKAENHILFSISSIKNPPHYGAFANRSLDEMRAGA 180 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------- 227 R+ +K+ DF+LWK S EPGW+SP G GRPGWHIECSAMS L Sbjct: 181 RIDVAAYKREEMDFVLWKPSAEGEPGWKSPGGIPVLGRPGWHIECSAMSMAKLLAPYGGG 240 Query: 228 -------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 +FDIHGGGLDLIFPHHENEIAQSC A E+ AN W+HNGFL +EG+KMSK Sbjct: 241 LTCDDPIANIFDIHGGGLDLIFPHHENEIAQSCSAFGTERMANFWMHNGFLQVEGKKMSK 300 Query: 281 SNGNFITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 S GNFITI +LE +F G ++W R +ML THYREP+++T QRL ++ Sbjct: 301 SFGNFITIRSVLENNFLEFNGALAYEIKQNWAGLSARFSMLQTHYREPLNWTAQRLMQSS 360 Query: 332 ILLSKWPQTSTSKG-------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +W + K I+ ++ AL +DLNT A L K K D L + Sbjct: 361 SELYRWYELLRDKKSMMENNEAIEDTLIDALSDDLNTPKAFTLLRKF----YKAGDALAL 416 Query: 385 FNASAHILGI-------EV-CKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQ 434 N ++LG+ E+ C + K S IE+ + ERL L+ K++ +AD IR + Sbjct: 417 ANG-MNLLGLLRQEWIKEIDCPLFIKKTSLDSKFIEQCIAERLRLIHNKEWGAADKIRNE 475 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L ++G +L+D K+P +G+R+T W+ K Sbjct: 476 LAAEGILLKDGKDPQSGKRITVWEIK 501 >gi|49474075|ref|YP_032117.1| cysteinyl-tRNA synthetase [Bartonella quintana str. Toulouse] gi|61216196|sp|Q6G073|SYC_BARQU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49239579|emb|CAF25936.1| Cysteinyl-tRNA synthetase [Bartonella quintana str. Toulouse] Length = 502 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 230/499 (46%), Positives = 309/499 (61%), Gaps = 41/499 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++ YNTL RK F ID + +R+YVCGPT+YD+AHIGNAR +IVFDVL+RLLRY YG Sbjct: 2 RKLRFYNTLTRKKENFTPIDATKVRLYVCGPTIYDYAHIGNARSVIVFDVLFRLLRYVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRNITD+DDKI RA EHP + +NDAI +T + QF +DT L CL PT Q Sbjct: 62 NEHVIYVRNITDVDDKINARAACEHPELALNDAIRQLTERTYSQFQQDTMALGCLLPTSQ 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRV 179 PRAT+H+ M LI+ ++ GHAY+ N ++F SI P+YG+F++R +DE + G RV Sbjct: 122 PRATDHLEDMRSLIERLLEKGHAYKVQNHVLFSVRSIRNHPHYGAFAKRSLDEMRAGARV 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL--------- 227 +K+ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 182 DVAAYKREEMDFVLWKPSAVGEPGWASPAGIPVLGRPGWHIECSAMSMAKLLAPYGGGLT 241 Query: 228 -----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 VFDIHGGG+DLIFPHHENEIAQSC A E+ AN+W+HNGFL +EG+KMSKS Sbjct: 242 CDDPTANVFDIHGGGIDLIFPHHENEIAQSCSAFGTERMANLWMHNGFLQVEGKKMSKSL 301 Query: 283 GNFITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 GNFITI +LE+ +F G ++W R +ML THYREP+++T QRL ++ Sbjct: 302 GNFITIRSILESDFFEFNGVLTDEMKQNWAGLSARFSMLQTHYREPLNWTAQRLVQSSSE 361 Query: 334 LSKW-------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL--ARESTKNHDLLPI 384 L +W + +D +V+ AL +DLNT A+ L K A + + + + Sbjct: 362 LYRWYELLCFEREEMEKNEALDDSVIDALSDDLNTPKALTLLRKFYKAGNAIALANGMNL 421 Query: 385 FNASAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 F EV + IS+ I++ + ERL L+ K++++AD IR +L +KG I Sbjct: 422 FGLLRQEWVQEVECPLFMRKISLNSKFIDQRIAERLRLIHNKEWAAADTIRDELAAKGVI 481 Query: 442 LEDYKNPDNGQRMTRWKQK 460 L+D K+P G+R T W+ + Sbjct: 482 LKDGKDPQTGERTTMWEMR 500 >gi|217976332|ref|YP_002360479.1| cysteinyl-tRNA synthetase [Methylocella silvestris BL2] gi|254781685|sp|B8EMY2|SYC_METSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|217501708|gb|ACK49117.1| cysteinyl-tRNA synthetase [Methylocella silvestris BL2] Length = 449 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/460 (48%), Positives = 293/460 (63%), Gaps = 16/460 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL R+ F IDP+++R+Y CGPTVYD HIGN R +IVFD+L+RLLR+ YG+ Sbjct: 3 LRFYNTLTRQKEAFTPIDPADVRVYACGPTVYDHLHIGNGRMLIVFDLLFRLLRHVYGKD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI RA + I ++T + T F +D L CL PT +PR Sbjct: 63 HVRYVRNITDVDDKINARAAERGVDI------RVLTDEMTAIFHEDAAGLGCLPPTVEPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ +MI +IQ +I G AY A ++FD ++P+YG+ S+R +D+ G RV + Sbjct: 117 ATEHMAEMIAIIQKLIDKGAAYIAEGHVLFDVPAMPDYGALSKRPLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF+LWK + P EPGWESPWGRGRPGWHIECSAMS +LG+VFDIHGGG+DL+FPH Sbjct: 177 KRGPMDFVLWKPAAPSEPGWESPWGRGRPGWHIECSAMSWRHLGEVFDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA A++W+HNG L +EG KMSKS GNF+TI+ELL + FGGR WP Sbjct: 237 HENEIAQTRCAFGHSVMAHVWMHNGHLQVEGEKMSKSLGNFVTIHELLNSDSFGGRKWPG 296 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPAVLSALYNDLNTV 362 V+RLAML THYR+PIDFTV+ L EAE LS+W + D + AL +DLNT Sbjct: 297 AVLRLAMLRTHYRQPIDFTVKALEEAERTLSEWRHAAEGAEPEAPDANFIDALSDDLNTP 356 Query: 363 SAIQALHKL-ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 AI LH L A+ L + LG E + L ++ I L+ ER + Sbjct: 357 RAISELHALKAKRPGALLGGLALLGVDLADLGEE--ERALPRSAFEQIMALIAEREAARQ 414 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 K ++ +D +R +L + G +L+D K T W+ KP Sbjct: 415 HKNWAESDRLRDKLAAMGVVLKDNKG-----GATSWELKP 449 >gi|319404030|emb|CBI77618.1| Cysteinyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498] Length = 502 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 230/501 (45%), Positives = 310/501 (61%), Gaps = 47/501 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ YNTL R+ +F ID + +R+YVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 ELRFYNTLTRRKEDFIPIDATKVRLYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHIYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +A ++P + +NDAI +T + QF +DT L CL PT QP Sbjct: 63 NHVIYVRNITDVDDKINAKAALQYPDLELNDAIHQLTEHTSYQFQQDTLALGCLPPTSQP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 RAT+H+ ++ +LI+ ++ GHAY A+N I+F SS+ P YG F++R +DE + G R+ Sbjct: 123 RATDHLEEIRFLIERLLEKGHAYIADNHILFSVSSMGDNPRYGMFAKRSLDEMRAGARID 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS-----SHYLG---- 228 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS S Y G Sbjct: 183 VASYKKGEMDFVLWKPSAQGEPGWTSPAGISVLGRPGWHIECSAMSMAKLLSPYGGGFVC 242 Query: 229 -----KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +FDIHGGG+DLIFPHHENEIAQSC E+ AN W+HNGFL +EG+KMSKS G Sbjct: 243 EDPTANIFDIHGGGIDLIFPHHENEIAQSCSVFGTERMANFWMHNGFLQVEGKKMSKSLG 302 Query: 284 NFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 NFITI LLE F + W IR +ML THYREP+++T+QRL ++ L Sbjct: 303 NFITIRSLLEDDFFEFADILSAEVKQIWAGLSIRFSMLQTHYREPLNWTMQRLIQSSSEL 362 Query: 335 SKWPQTSTSKG-------IIDPAVLSALYNDLNTVSAIQALHKLARES-----TKNHDLL 382 +W + S+ +D +++ L NDLNT + I L K +E T D L Sbjct: 363 YRWYELLRSEKYCLEDNQTVDSSLIKTLSNDLNTSNTITILRKFYKEHNVIALTHGMDFL 422 Query: 383 PIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + + K HLN I++ + ERL L+ K++++AD IR +L +G Sbjct: 423 GLLRQELVKEKECPLFIGKTHLNLQF---IDQRIAERLALIHNKEWAAADKIRDELAVEG 479 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 L+D K+P G+R+T W+ K Sbjct: 480 IFLKDSKDPQTGERITTWEMK 500 >gi|319407042|emb|CBI80679.1| Cysteinyl-tRNA synthetase [Bartonella sp. 1-1C] Length = 502 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 232/506 (45%), Positives = 315/506 (62%), Gaps = 57/506 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ YNTL R+ +F ID + +R+YVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 ELRFYNTLTRRKEDFIPIDATKVRLYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +A ++P + +NDAI +T + QF +DT L CL PT QP Sbjct: 63 NHVIYVRNITDVDDKINAKAALQYPDLELNDAIHQLTEHTSYQFQQDTLALGCLPPTSQP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 RAT+H+ ++ +LI+ ++ GHAY A+N I+F S+ P YG F++R +DE + G R+ Sbjct: 123 RATDHLEEIRFLIERLLEKGHAYIADNHILFSVGSMGDNPRYGMFAKRSLDEMRAGARID 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS-----SHYLG---- 228 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS S Y G Sbjct: 183 VASYKKGEMDFVLWKPSAQGEPGWISPAGISVLGRPGWHIECSAMSMAKLLSPYGGGFIC 242 Query: 229 -----KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +FDIHGGG+DLIFPHHENEIAQSC E+ AN W+HNGFL +EG+KMSKS G Sbjct: 243 EDPTANIFDIHGGGIDLIFPHHENEIAQSCSVFGTERMANFWMHNGFLQVEGKKMSKSLG 302 Query: 284 NFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 NFITI LLE F R W IR +ML THYREP+++T+QRL ++ L Sbjct: 303 NFITIRSLLENDFFEFADILSAEVKRIWAGLSIRFSMLQTHYREPLNWTMQRLVQSSSEL 362 Query: 335 SKWPQTSTSK-------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA 387 +W + S+ +D +++ L NDLNT + I L K +E H+++ + + Sbjct: 363 YRWYELLRSERCCLDDNQTVDSSLIKTLSNDLNTSNTITILRKFYKE----HNIIALAHG 418 Query: 388 SAHILGI---EVCKE----------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 LG+ E+ KE HLN I++ + ERL L+ K++ +AD IR + Sbjct: 419 -MDFLGLLRQELVKEKECPLFVGKTHLNLQF---IDQRIAERLALIHNKEWEAADKIRGE 474 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L ++G L+D K+P G+R+T W+ K Sbjct: 475 LAAEGIFLKDSKDPQTGERITTWEMK 500 >gi|121602424|ref|YP_988796.1| cysteinyl-tRNA synthetase [Bartonella bacilliformis KC583] gi|187629794|sp|A1US43|SYC_BARBK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120614601|gb|ABM45202.1| cysteinyl-tRNA synthetase [Bartonella bacilliformis KC583] Length = 500 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 229/507 (45%), Positives = 317/507 (62%), Gaps = 61/507 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL RK +F ID S +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ YG+ Sbjct: 4 LRFYNTLTRKKEDFIPIDSSKVRLYVCGPTVYDYAHIGNARPVIVFDILFRLLRHVYGKD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI RA +E+P + +NDAI +T + QF +DT L CL PT+QPR Sbjct: 64 HVIYARNVTDVDDKINARAIREYPKLTLNDAIHQLTERTYDQFQQDTEALGCLLPTYQPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKIDEQKMGTRVPE 181 AT+H+ +M LI+ ++ GHAY A N ++F +SI N YG F++R ++E K G RV Sbjct: 124 ATDHLEEMRSLIERLLEKGHAYIAENHVLFSVNSIKNNPLYGVFAKRSLNEMKAGARVDV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS-----SHYLG----- 228 +K++ DF+LWK ST EPGW+SP G GRPGWHIECSAMS + Y G Sbjct: 184 APYKRDDMDFVLWKPSTQQEPGWKSPAGISVLGRPGWHIECSAMSMAKLLTPYGGGLACD 243 Query: 229 ----KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 VFDIHGGG+DLIFPHHENEIAQSC E+ AN W+HNGFL +EGRKMSKS GN Sbjct: 244 DLSVNVFDIHGGGIDLIFPHHENEIAQSCSVFGTERMANFWMHNGFLQVEGRKMSKSFGN 303 Query: 285 FITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 FITI +LE+ +F +SW R +ML THYREP+++T QRL ++ L Sbjct: 304 FITIRSILESNFVEFSNAMTDDLKQSWAGLSARFSMLQTHYREPLNWTAQRLAQSSSELY 363 Query: 336 KWPQ-------TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS 388 +W + + G+ID +++S L +DLNT ++ L K +E NA Sbjct: 364 RWYELLRCERSCLDNGGVIDASLISTLSDDLNTPNSFTLLRKFYKEE----------NAV 413 Query: 389 AHILGIE---VCKEHLNKNI------------SIAIEKLVQERLILLKMKKFSSADYIRK 433 A + G++ + ++ + I S I++ + ERL+ ++ K++++AD IR Sbjct: 414 ALVQGMDLFGLLRQEWVREIECPLFVKGIDLDSKFIDQRIAERLLFIQNKEWAAADEIRN 473 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 +L KG L+D K+ G+R+T W+ K Sbjct: 474 ELAKKGIALKDEKDSQTGERITTWEVK 500 >gi|319405467|emb|CBI79086.1| Cysteinyl-tRNA synthetase [Bartonella sp. AR 15-3] Length = 502 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 227/501 (45%), Positives = 310/501 (61%), Gaps = 47/501 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ YNTL RK +F ID + +R+YVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 ELRFYNTLTRKKEDFIPIDATKVRLYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITD+DDKI +A ++P++ +NDAI +T + QF +DT L CL PT QP Sbjct: 63 NHVIYARNITDVDDKINAKAAFQYPNLELNDAIHQLTEHTSYQFQQDTLALGCLPPTSQP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 RAT+H+ ++ +LI+ ++ G+AY A+N I+F S+ P YG F++R +DE + G R+ Sbjct: 123 RATDHLEEIRFLIERLLEKGYAYIADNHILFSVGSMGDNPRYGMFAKRSLDEMRAGARIE 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS-----SHYLG---- 228 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS S Y G Sbjct: 183 VASYKKGEMDFVLWKPSAQGEPGWTSPAGIPVLGRPGWHIECSAMSMAKLLSPYGGGFVC 242 Query: 229 -----KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +FDIHGGG+DLIFPHHENEIAQSC A E+ AN W+HNGFL +EG+KMSKS G Sbjct: 243 EDPTANIFDIHGGGIDLIFPHHENEIAQSCSAFGTERMANFWMHNGFLQVEGKKMSKSLG 302 Query: 284 NFITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 NF+TI LLE +F G R W IR +ML THYREP+++T+QRL ++ L Sbjct: 303 NFVTIRSLLENDFFEFAGILSDEIKRIWAGLSIRFSMLQTHYREPLNWTMQRLVQSSNEL 362 Query: 335 SKWPQTSTS-------KGIIDPAVLSALYNDLNTVSAIQALHKLARES-----TKNHDLL 382 W + S K +D +++ L NDLNT + I L K ++ + D L Sbjct: 363 YHWYELLRSEKWCLDDKQSVDSSLIKTLSNDLNTWNTITILRKFYKKHNVVALARGMDFL 422 Query: 383 PIFNAS---AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + + K H + I++ + ERL L+ K++++AD IR +L + G Sbjct: 423 GLLRQEFIKEKECPLFISKMHFDLQF---IDQRIAERLCLIHNKEWAAADKIRDELAAGG 479 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 L+D K+P G+R+T W+ K Sbjct: 480 IFLKDSKDPQTGERITTWETK 500 >gi|49475313|ref|YP_033354.1| cysteinyl-tRNA synthetase [Bartonella henselae str. Houston-1] gi|61216197|sp|Q6G5G9|SYC_BARHE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49238119|emb|CAF27326.1| Cysteinyl-tRNA synthetase [Bartonella henselae str. Houston-1] Length = 503 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/513 (44%), Positives = 313/513 (61%), Gaps = 68/513 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++ YNTL RK F ID + +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ YG Sbjct: 2 RELRFYNTLTRKKENFIPIDATRVRLYVCGPTVYDYAHIGNARPVIVFDILFRLLRHVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI RA E+P + +NDAI +T QF +DT L CL PT + Sbjct: 62 NEHVIYARNITDVDDKINARAAYEYPELALNDAIRQLTQLTYTQFQQDTMALGCLPPTIE 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRV 179 PRAT+H+ +M LI+ ++ GHAY+A N ++F SSI P+YGSF++R +DE + G RV Sbjct: 122 PRATDHLEEMRSLIERLLEKGHAYKAENHVLFSVSSIRNDPHYGSFAKRSLDEMRAGARV 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS-----SHYLG--- 228 +K+ DF+LWK S EPGW SP G GRPGWHIECSAMS + Y G Sbjct: 182 DVASYKREEMDFVLWKPSAEGEPGWTSPAGIPVLGRPGWHIECSAMSMAKLLAPYGGGLT 241 Query: 229 ------KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 VFDIHGGGLDLIFPHHENEIAQSC A E+ AN+W+HNGFL +EG+KMSKS Sbjct: 242 CDDPTENVFDIHGGGLDLIFPHHENEIAQSCSAFGTERMANLWMHNGFLQVEGKKMSKSL 301 Query: 283 GNFITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 NFITI +LE+ +F G ++W R +ML THYREP+++T QRL ++ Sbjct: 302 SNFITIRSILESDFFEFNGVLTNEMKQNWAGLSARFSMLQTHYREPLNWTAQRLMQSSSE 361 Query: 334 LSKW--------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHK--------------- 370 L +W + +ID ++++AL +DLNT A+ L K Sbjct: 362 LYRWYELLRCEKTEMEKKNEVIDDSLINALSDDLNTPKALTLLRKFYKRGNAVSLASGMN 421 Query: 371 ---LARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSS 427 L R+ P+F + K L++ I++ + ERL L+ K++++ Sbjct: 422 FFGLLRQEWVRDGKCPLF----------MRKTSLDEKF---IDQRIAERLRLIHNKEWTA 468 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 AD IR +L ++G +L+D K+P G+R T W+ K Sbjct: 469 ADTIRDKLAAEGIVLKDIKDPQTGERTTMWEIK 501 >gi|148254912|ref|YP_001239497.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] gi|166200130|sp|A5EHE7|SYC_BRASB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146407085|gb|ABQ35591.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 472 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/476 (45%), Positives = 297/476 (62%), Gaps = 29/476 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+T R+ F + +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 2 ELRLYDTATREKRPFVPLHRNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGA 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRNITD+DDKI RA ++ P +P+N+AI +T +QF +D L CL PT +P Sbjct: 62 EHVTYVRNITDVDDKINARAARDFPGLPLNEAIRNVTELTERQFHEDVDALGCLRPTIEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------IPNYGSFSRRKIDEQKMG 176 RAT HI +M +I+ ++ G AY A + ++F ++ +P YG+ + R +DE G Sbjct: 122 RATEHIAEMRDIIERLVAGGFAYVAEDHVLFSPAAMNAANKVLPRYGALANRSLDEMIAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDI 233 RV +KK+ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FDI Sbjct: 182 ARVDVAPYKKDATDFVLWKPSKPGEPSWPSPAGIAAEGRPGWHIECSAMSWKHLGETFDI 241 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL+FPHHENE+AQSCCA + AN+W+HNGFL +EG KMSKS GNF+TI E+L Sbjct: 242 HGGGIDLVFPHHENEVAQSCCAFHTARMANVWMHNGFLQVEGEKMSKSLGNFVTIREVLA 301 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAV 351 WP V+RL ML THYR PID+T++ L E+ + W +T+ +G AV Sbjct: 302 -------DWPGEVVRLNMLKTHYRSPIDWTLRGLEESAKAVDDWYRTAGDLREGRPADAV 354 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH-DLLPIFNASAHILGI--------EVCKEHLN 402 + AL +D+NT + LH L E+ D + F S +LG K+ + Sbjct: 355 IEALRDDINTPLMVAVLHGLRNEAASGGVDDVARFVGSLRLLGFLAEDAAQWRARKQQAS 414 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+ ER K F +D +R +L + G +L+D K D G+ +T W+ Sbjct: 415 GVDAAKVEGLIAERTAARARKDFKESDRLRDELAAMGVVLKDGKGAD-GKPVTTWE 469 >gi|319898705|ref|YP_004158798.1| Cysteinyl-tRNA synthetase [Bartonella clarridgeiae 73] gi|319402669|emb|CBI76215.1| Cysteinyl-tRNA synthetase [Bartonella clarridgeiae 73] Length = 502 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/501 (44%), Positives = 305/501 (60%), Gaps = 47/501 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K++ YNTL RK +F+ ID + +R+YVCGPTVYD+AHIGNAR +I+FDVL+RLLR+ YGE Sbjct: 3 KLRFYNTLTRKKEDFKPIDATKVRLYVCGPTVYDYAHIGNARSVIIFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITD+DDKI +A ++P + +N+AI +T + QF +DT L CL PT QP Sbjct: 63 NHVIYARNITDVDDKINAKAALQYPDLELNNAIHQLTEYTSYQFQQDTLALGCLQPTSQP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 RAT+H+ ++ LI+ ++ G+AY A++ I+F SS+ P YG F++R +DE + G R+ Sbjct: 123 RATDHLEEIRSLIERLLEKGYAYIADDHILFSVSSMGDNPRYGMFAKRSLDEMRAGARID 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS-----SHYLG---- 228 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS S Y G Sbjct: 183 VASYKKGEMDFVLWKPSAQGEPGWTSPAGISVLGRPGWHIECSAMSMAKLLSPYGGGLVC 242 Query: 229 -----KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +FDIHGGG DLIFPHHENEIAQSC E+ AN WIHNGFL +EG+KMSKS G Sbjct: 243 EDPTANIFDIHGGGSDLIFPHHENEIAQSCSVFGTERMANFWIHNGFLQVEGKKMSKSLG 302 Query: 284 NFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 NFITI LLE F R W IR +ML THYREP+++T+QRL ++ L Sbjct: 303 NFITIRSLLENDFFEFANVLSKEVKRIWAGLSIRFSMLQTHYREPLNWTMQRLVKSSSEL 362 Query: 335 SKWPQT-------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHDLL 382 +W + S + +D +++ L ND+NT + I L K +E D L Sbjct: 363 YRWYELLRREKYYSDNNQSVDSSLIETLSNDINTSNTITILRKFYKEQNAVALAHGMDFL 422 Query: 383 PIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + + K H + I++ + ERL L+ K++++AD IR +L + G Sbjct: 423 GLLRQELVKKKECPLFISKMHFDLQF---IDQRIAERLCLIHNKEWAAADKIRDELAAGG 479 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 L+D K+P G+R+T W+ K Sbjct: 480 IFLKDSKDPQTGERITTWEMK 500 >gi|312114423|ref|YP_004012019.1| cysteinyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311219552|gb|ADP70920.1| cysteinyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 449 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 220/465 (47%), Positives = 282/465 (60%), Gaps = 30/465 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+K+YNT R+ F+ IDP +RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 2 KLKLYNTRTRRKELFRPIDPKAVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHIYGA 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V Y RNITD+DDKI RA E SI +T + QF D + L PT +P Sbjct: 62 EHVIYARNITDVDDKINARAAAEGVSI------RELTERTAAQFHADAAAIGALPPTIEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +MI L++ ++ GHAY A ++F+ S +YG SRR +D+ + G RV Sbjct: 116 RATEHIAEMIALVERLVERGHAYAAEGHVLFNVPSDDDYGGLSRRSVDDMRAGARVEVAP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S EPGWESPWG GRPGWH+ECSAM+ +LG VFDIHGGG+DL+FP Sbjct: 176 YKRDPMDFVLWKPSEGAEPGWESPWGFGRPGWHLECSAMAEKHLGTVFDIHGGGIDLLFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA E AN W+HNG L +EG+KMSKS GNFITI +LL + WP Sbjct: 236 HHENELAQSTCAHDTEVMANYWVHNGHLQVEGQKMSKSLGNFITIRDLL-------KDWP 288 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDPAVLSA------ 354 VIRL ML THYR+P+D+T + L E++ +L +W S+ +D + Sbjct: 289 GDVIRLNMLRTHYRQPMDWTAKGLAESDQMLRRWRTNLSHEASEDDLDSKDFAELEFFRR 348 Query: 355 -LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLV 413 L +DLNT AI +HK+ K F LG L IE + Sbjct: 349 DLADDLNTPMAIAEIHKMGPSGRK-------FALDLLGLGEPAEDPRLMAVDETGIEARI 401 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 RL K K ++ AD IR +L + G L D KNP G+ T W+ Sbjct: 402 TARLAARKSKNWAEADRIRDELAAMGVALMDAKNPATGEIETTWE 446 >gi|27378901|ref|NP_770430.1| cysteinyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] gi|61216344|sp|Q89NP8|SYC_BRAJA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|27352051|dbj|BAC49055.1| cysteinyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/466 (46%), Positives = 292/466 (62%), Gaps = 39/466 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+TL ++ F +D +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 2 ELRLYDTLTKEKRTFVPLDANNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +RA ++ P +P+N+AI +T + +QF D L L P+ +P Sbjct: 62 AHVKYVRNITDVDDKINDRAARDFPGLPLNEAIREVTEQTGKQFHADVDALGALRPSVEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFD-------TSSIPNYGSFSRRKIDEQKMG 176 RAT HI +M +I+ ++ G AY A + ++F S++P YG+ S R +DE G Sbjct: 122 RATEHIGEMREIIERLVAGGFAYVAEDHVLFSPQAMNAANSTLPRYGALSNRSLDEMVAG 181 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDI 233 RV +KK DF+LWK S P EP W SP G +GRPGWHIECSAM+ +LG+ FDI Sbjct: 182 ARVDVAPYKKGSTDFVLWKPSKPGEPSWPSPAGIAAQGRPGWHIECSAMAWKHLGEYFDI 241 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL+FPHHENE+AQ+CCA E+ AN W+HNGFL +E KMSKS GNFITI+ELL Sbjct: 242 HGGGIDLVFPHHENEVAQTCCAFHRERMANYWMHNGFLQVESEKMSKSLGNFITIHELLA 301 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---- 349 WP V+RL ML THYR PID+T++ L E+ L W + + +DP Sbjct: 302 -------DWPGEVLRLNMLKTHYRSPIDWTMKSLEESAKTLDDWYRVAAD---VDPGRPA 351 Query: 350 -AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI--------EVCKEH 400 +V+ L +DLNT AI ALH L +N D + S +LG E K+ Sbjct: 352 ASVVEPLLDDLNTSLAIAALHGL-----RNSD-VSALAGSLRLLGFLSESAAQWEDRKQK 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + +E+L+ ER K F +D IR QL + G ++D K Sbjct: 406 ASGVDAGEVERLISERTAARGRKDFKESDRIRDQLAAMGVAIKDSK 451 >gi|306845278|ref|ZP_07477854.1| cysteinyl-tRNA synthetase [Brucella sp. BO1] gi|306274437|gb|EFM56244.1| cysteinyl-tRNA synthetase [Brucella sp. BO1] Length = 506 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 229/501 (45%), Positives = 302/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELLETK--KFGGRS-------WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + G S W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWSDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K+ D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHAGAVAAALCDDLNSWAAITAL----RQAFKSRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLFDPYFVTASDVPIFAKADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|256254697|ref|ZP_05460233.1| cysteinyl-tRNA synthetase [Brucella ceti B1/94] gi|261221878|ref|ZP_05936159.1| cysteinyl-tRNA synthetase [Brucella ceti B1/94] gi|260920462|gb|EEX87115.1| cysteinyl-tRNA synthetase [Brucella ceti B1/94] Length = 506 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 228/501 (45%), Positives = 303/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGTPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|23501564|ref|NP_697691.1| cysteinyl-tRNA synthetase [Brucella suis 1330] gi|161618646|ref|YP_001592533.1| cysteinyl-tRNA synthetase [Brucella canis ATCC 23365] gi|225627175|ref|ZP_03785213.1| Cysteinyl-tRNA synthetase [Brucella ceti str. Cudo] gi|254701461|ref|ZP_05163289.1| cysteinyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|254704007|ref|ZP_05165835.1| cysteinyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|254709799|ref|ZP_05171610.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|254713802|ref|ZP_05175613.1| cysteinyl-tRNA synthetase [Brucella ceti M644/93/1] gi|254717140|ref|ZP_05178951.1| cysteinyl-tRNA synthetase [Brucella ceti M13/05/1] gi|256031289|ref|ZP_05444903.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|256060801|ref|ZP_05450963.1| cysteinyl-tRNA synthetase [Brucella neotomae 5K33] gi|256159399|ref|ZP_05457181.1| cysteinyl-tRNA synthetase [Brucella ceti M490/95/1] gi|256369113|ref|YP_003106621.1| cysteinyl-tRNA synthetase [Brucella microti CCM 4915] gi|260168427|ref|ZP_05755238.1| cysteinyl-tRNA synthetase [Brucella sp. F5/99] gi|260566743|ref|ZP_05837213.1| cysteinyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|261218954|ref|ZP_05933235.1| cysteinyl-tRNA synthetase [Brucella ceti M13/05/1] gi|261317337|ref|ZP_05956534.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261321547|ref|ZP_05960744.1| cysteinyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261324795|ref|ZP_05963992.1| cysteinyl-tRNA synthetase [Brucella neotomae 5K33] gi|261752004|ref|ZP_05995713.1| cysteinyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261754663|ref|ZP_05998372.1| cysteinyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|261757891|ref|ZP_06001600.1| cysteinyl-tRNA synthetase [Brucella sp. F5/99] gi|265988375|ref|ZP_06100932.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|265997841|ref|ZP_06110398.1| cysteinyl-tRNA synthetase [Brucella ceti M490/95/1] gi|294852039|ref|ZP_06792712.1| cysteinyl-tRNA synthetase [Brucella sp. NVSL 07-0026] gi|38258390|sp|Q8G1N5|SYC_BRUSU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082060|sp|A9MA50|SYC_BRUC2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|23347476|gb|AAN29606.1| cysteinyl-tRNA synthetase [Brucella suis 1330] gi|161335457|gb|ABX61762.1| cysteinyl-tRNA synthetase [Brucella canis ATCC 23365] gi|225618010|gb|EEH15054.1| Cysteinyl-tRNA synthetase [Brucella ceti str. Cudo] gi|255999273|gb|ACU47672.1| cysteinyl-tRNA synthetase [Brucella microti CCM 4915] gi|260156261|gb|EEW91341.1| cysteinyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|260924043|gb|EEX90611.1| cysteinyl-tRNA synthetase [Brucella ceti M13/05/1] gi|261294237|gb|EEX97733.1| cysteinyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261296560|gb|EEY00057.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261300775|gb|EEY04272.1| cysteinyl-tRNA synthetase [Brucella neotomae 5K33] gi|261737875|gb|EEY25871.1| cysteinyl-tRNA synthetase [Brucella sp. F5/99] gi|261741757|gb|EEY29683.1| cysteinyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261744416|gb|EEY32342.1| cysteinyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|262552309|gb|EEZ08299.1| cysteinyl-tRNA synthetase [Brucella ceti M490/95/1] gi|264660572|gb|EEZ30833.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|294820628|gb|EFG37627.1| cysteinyl-tRNA synthetase [Brucella sp. NVSL 07-0026] Length = 506 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 228/501 (45%), Positives = 303/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|17987555|ref|NP_540189.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|225852198|ref|YP_002732431.1| cysteinyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|256044370|ref|ZP_05447274.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|256113213|ref|ZP_05454081.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|256264294|ref|ZP_05466826.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|260563723|ref|ZP_05834209.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|265990788|ref|ZP_06103345.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|265994624|ref|ZP_06107181.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|38258395|sp|Q8YG89|SYC_BRUME RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765182|sp|C0RI19|SYC_BRUMB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|17983259|gb|AAL52453.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|225640563|gb|ACO00477.1| cysteinyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|260153739|gb|EEW88831.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|262765737|gb|EEZ11526.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|263001572|gb|EEZ14147.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|263094565|gb|EEZ18363.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|326408697|gb|ADZ65762.1| cysteinyl-tRNA synthetase [Brucella melitensis M28] gi|326538421|gb|ADZ86636.1| cysteinyl-tRNA synthetase [Brucella melitensis M5-90] Length = 506 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 228/501 (45%), Positives = 303/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|62289637|ref|YP_221430.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82699565|ref|YP_414139.1| cysteinyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308] gi|189023890|ref|YP_001934658.1| cysteinyl-tRNA synthetase [Brucella abortus S19] gi|237815131|ref|ZP_04594129.1| cysteinyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|254693431|ref|ZP_05155259.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya] gi|254697084|ref|ZP_05158912.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59] gi|254729980|ref|ZP_05188558.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 4 str. 292] gi|256257197|ref|ZP_05462733.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|260545608|ref|ZP_05821349.1| cysteinyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260757658|ref|ZP_05870006.1| cysteine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260761485|ref|ZP_05873828.1| cysteine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260883467|ref|ZP_05895081.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|261213685|ref|ZP_05927966.1| cysteine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|297248048|ref|ZP_06931766.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] gi|81309440|sp|Q57E65|SYC_BRUAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894886|sp|Q2YN22|SYC_BRUA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558619|sp|B2S4T7|SYC_BRUA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|62195769|gb|AAX74069.1| CysS, cysteinyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82615666|emb|CAJ10653.1| Cysteinyl-tRNA synthetase, class Ia [Brucella melitensis biovar Abortus 2308] gi|189019462|gb|ACD72184.1| Cysteinyl-tRNA synthetase, class Ia [Brucella abortus S19] gi|237789968|gb|EEP64178.1| cysteinyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|260097015|gb|EEW80890.1| cysteinyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260667976|gb|EEX54916.1| cysteine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260671917|gb|EEX58738.1| cysteine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260872995|gb|EEX80064.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|260915292|gb|EEX82153.1| cysteine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|297175217|gb|EFH34564.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] Length = 506 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 228/501 (45%), Positives = 303/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDHWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|254688949|ref|ZP_05152203.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 6 str. 870] gi|260754439|ref|ZP_05866787.1| cysteine-tRNA ligase [Brucella abortus bv. 6 str. 870] gi|260674547|gb|EEX61368.1| cysteine-tRNA ligase [Brucella abortus bv. 6 str. 870] Length = 506 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 228/501 (45%), Positives = 303/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDHWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILG------IEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G + V + + AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTVSDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|254718815|ref|ZP_05180626.1| cysteinyl-tRNA synthetase [Brucella sp. 83/13] gi|265983799|ref|ZP_06096534.1| cysteinyl-tRNA synthetase [Brucella sp. 83/13] gi|306837536|ref|ZP_07470411.1| cysteinyl-tRNA synthetase [Brucella sp. NF 2653] gi|264662391|gb|EEZ32652.1| cysteinyl-tRNA synthetase [Brucella sp. 83/13] gi|306407428|gb|EFM63632.1| cysteinyl-tRNA synthetase [Brucella sp. NF 2653] Length = 506 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 227/501 (45%), Positives = 302/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVAALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHAGAVAAALCDDLNSWAAITAL----RQAFKARDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLFDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 REGVQLKDSKDPATGERITTW 502 >gi|163842948|ref|YP_001627352.1| cysteinyl-tRNA synthetase [Brucella suis ATCC 23445] gi|187629797|sp|B0CL02|SYC_BRUSI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|163673671|gb|ABY37782.1| cysteinyl-tRNA synthetase [Brucella suis ATCC 23445] Length = 506 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 227/501 (45%), Positives = 302/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN L R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNMLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 482 QEGVQLKDSKDPATGERITTW 502 >gi|148560736|ref|YP_001258660.1| cysteinyl-tRNA synthetase [Brucella ovis ATCC 25840] gi|187629796|sp|A5VPL3|SYC_BRUO2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148371993|gb|ABQ61972.1| cysteinyl-tRNA synthetase [Brucella ovis ATCC 25840] Length = 506 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 227/501 (45%), Positives = 302/501 (60%), Gaps = 52/501 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 QLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT QP Sbjct: 67 QHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 127 RATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMDARKGPRYGALARRSLDEMLAGAR 186 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV 230 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L G + Sbjct: 187 VDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGL 246 Query: 231 ---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 247 KCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKS 306 Query: 282 NGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L + ++G + W RL+ML THYREPI++T QRL E+ Sbjct: 307 LGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESAD 366 Query: 333 LLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 367 ELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALG 422 Query: 386 NASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 423 EGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDELL 481 Query: 437 SKGFILEDYKNPDNGQRMTRW 457 +G L+D K+ G+R+T W Sbjct: 482 QEGVQLKDSKDSATGERITTW 502 >gi|153009938|ref|YP_001371153.1| cysteinyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] gi|187629834|sp|A6X270|SYC_OCHA4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151561826|gb|ABS15324.1| cysteinyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] Length = 505 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 228/505 (45%), Positives = 301/505 (59%), Gaps = 60/505 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R EF +D N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 QLRLYNTLTRMKEEFSPLDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGA 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTY RNITD+DDKI RA +++P + N+AI +T QF D T L L P+ QP Sbjct: 66 EHVTYARNITDVDDKINARAARDYPDLAFNEAIRRVTESTNAQFQADVTALGNLQPSVQP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ +M +I ++ G AY A + ++F S++ P YG+ +RR +DE G R Sbjct: 126 RATEHMDEMRAMIDRLVKLGVAYVAEDHVLFSPSAMNERKGPRYGALARRSLDEMLAGAR 185 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS------------ 223 V +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS Sbjct: 186 VDVASYKRDEMDFVLWKPSKEGEPGWSSPAGIAVLGRPGWHIECSAMSMAKLLEPFGGGL 245 Query: 224 --SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 L FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS Sbjct: 246 KCDDPLKNQFDIHGGGIDLVFPHHENEIAQSCCAFGTERMANIWMHNGFLQVEGQKMSKS 305 Query: 282 NGNFITINELLET--------KKFGGRS-WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 GNFITI ++L R W RL+ML THYREPI++T QRL E+ Sbjct: 306 LGNFITIRDVLNEGLPQLGVWDDVDARDRWIGLAARLSMLQTHYREPINWTAQRLAESAD 365 Query: 333 LLSKW-----------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 L +W P+T T+ G V+ AL +DLN+ +AI AL R++ K D+ Sbjct: 366 ELHRWYGLLRDRKFTVPETLTAVG----EVVEALSDDLNSWTAITAL----RKAFKARDI 417 Query: 382 LPIFNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIR 432 + A +LG+ + ++I + AIE + ERL + K ++ AD IR Sbjct: 418 TGLGEGMA-LLGLLDPHFVMAEDIPVFAKAEVDHQAIEARIAERLRFINEKNWAEADRIR 476 Query: 433 KQLESKGFILEDYKNPDNGQRMTRW 457 +L +G L+D K+P G+R T W Sbjct: 477 DELLQEGVQLKDGKDPATGERTTSW 501 >gi|144897394|emb|CAM74258.1| Cysteinyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1] Length = 459 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/476 (47%), Positives = 280/476 (58%), Gaps = 45/476 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ FQ + P ++ MYVCGPTVYD AHIGNARP+IVFDVLYRLL Y V Sbjct: 5 LYNTLTRRKEAFQPLSPDHVGMYVCGPTVYDRAHIGNARPVIVFDVLYRLLSRLY--PSV 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITD+DDKI +R++ + I++IT++ TQ F D L L PT +PRAT Sbjct: 63 TYVRNITDVDDKINQRSKDS------GEPIAVITARTTQMFHDDIAELNALPPTIEPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI QMI +IQ +I GHAY A ++F+ S+ +YG SRR +DE G RV +KK Sbjct: 117 AHIQQMIDMIQVLIAKGHAYAAEGHVLFEVGSMADYGQLSRRSMDEMIAGARVEVAPYKK 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 N DF+LWK STP PGW+SPWGRGRPGWHIECSAMS YLG+ FDIHGGG DL+FPHHE Sbjct: 177 NAGDFVLWKPSTPDLPGWDSPWGRGRPGWHIECSAMSGQYLGQTFDIHGGGQDLVFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS CA+ A W+HNG+L +EG KMSKS GNF T+ ELLE P Sbjct: 237 NEIAQSQCANGA-PFARYWLHNGYLMVEGEKMSKSLGNFFTVRELLEAA-------PGEA 288 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALYNDL 359 IRL ML THY +P D+T + L +A L + T + AV +AL +DL Sbjct: 289 IRLCMLSTHYHQPFDWTAEGLKQARATLDRLYNALRGTADAGTEAVDLPLAVQAALEDDL 348 Query: 360 NTVSAIQALHKL------ARESTKNHDLLPIFNASAHILGIEVCKEHL----------NK 403 NT AI LH+L A + A+ LG+ + + + Sbjct: 349 NTPLAISHLHELAGALNKAESAADKARARGALLAAGQALGVLLQDPEVWFRWQSAGADSG 408 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+Q RL K K F+ AD IRK+L G +LED G + T WK+ Sbjct: 409 PDEAGIESLIQARLEARKAKNFAEADRIRKELADSGVVLED------GPQGTTWKR 458 >gi|90423589|ref|YP_531959.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] gi|109894931|sp|Q216P6|SYC_RHOPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|90105603|gb|ABD87640.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] Length = 488 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 220/496 (44%), Positives = 299/496 (60%), Gaps = 55/496 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL ++ +F +DPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 3 LRLYDTLTKEKRDFAPLDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGPD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI +RA ++ P +P+N+AI +T + +QF D L CL PT +PR Sbjct: 63 HVKYVRNITDVDDKINDRATRDFPGLPLNEAIRKVTEQTEKQFHDDVDALGCLRPTIEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------IPNYGSFSRRKIDEQKMGT 177 AT HI +M +I ++ G AY A + ++F + +P YGS + R +DE G Sbjct: 123 ATEHIGEMRSIIDRLVEGGFAYVAEDHVLFSPQAMNAADGILPRYGSLANRSLDEMIAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIH 234 RV +K++ DF+LWK S P EP W SP G +GRPGWHIECSAM+ +LG+ FDIH Sbjct: 183 RVDVAPYKRDVTDFVLWKPSKPGEPSWPSPAGIATQGRPGWHIECSAMAWKHLGEKFDIH 242 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL+FPHHENE+AQSCCA ++ A W+HNGFL +EG KMSKS GNF+TI++ + Sbjct: 243 GGGIDLVFPHHENEVAQSCCAFHTDRMATTWMHNGFLQVEGEKMSKSLGNFLTISDQRD- 301 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----A 350 W V+RL ML THYR+PID+T L+E L +W + S DP Sbjct: 302 ------QWGPAVLRLNMLKTHYRQPIDWTQHNLSETGRELDRWFEFLESASGGDPNDAND 355 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHL--------- 401 V+SAL +DLNT +AI AL R KN + + + +LGI + +E + Sbjct: 356 VMSALADDLNTSAAITAL----RVQFKNKNSAAL-RSGLDLLGIPIGREFIQGRKHVRLY 410 Query: 402 -----------NKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 S A I++L+ R K F +D IR QL + G +L Sbjct: 411 AEGAFVAAGGGTATFSTASSSVERSDIQQLIDARAAARARKDFKESDRIRDQLAAMGVVL 470 Query: 443 EDYKNPDNGQRMTRWK 458 +D K+ D G+ T W+ Sbjct: 471 KDGKDAD-GKPTTTWE 485 >gi|154248635|ref|YP_001419593.1| cysteinyl-tRNA synthetase [Xanthobacter autotrophicus Py2] gi|229558802|sp|A7IPJ0|SYC_XANP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154162720|gb|ABS69936.1| cysteinyl-tRNA synthetase [Xanthobacter autotrophicus Py2] Length = 462 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/474 (47%), Positives = 292/474 (61%), Gaps = 34/474 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R + +DP+N+RMYVCGPTVYD AHIGNARP+IVFDVL+RLLR YGE Sbjct: 2 ELRLYNTLTRSKDTLRPLDPANVRMYVCGPTVYDHAHIGNARPVIVFDVLFRLLRRLYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI RA + I I D +T + + F +DT L CL PT +P Sbjct: 62 GHVKYVRNITDVDDKINARAAER--GITIRD----LTEETYRWFREDTAALNCLRPTVEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M LI++++ GHAY A ++F S+P+YG SRR +DE G RV Sbjct: 116 RATEHIAEMRTLIESLVASGHAYVAEEHVLFHVPSMPDYGRLSRRPLDEMVAGARVDVAP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S PGW SP G GRPGWHIECSAMS +LG+ FDIHGGG+DL Sbjct: 176 YKRDPMDFVLWKPSEAGIPGWPSPCGIATPGRPGWHIECSAMSWRHLGETFDIHGGGIDL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA A +W+HNGFL LEG KMSKS GNF+TI ELL Sbjct: 236 VFPHHENEIAQSRCAFHTGVMAQMWMHNGFLMLEGEKMSKSLGNFVTIRELLA------- 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKG-IIDPAVLS 353 WP V+RLAML THYR+PI++T Q L A L KW + T +G + + Sbjct: 289 EWPGEVLRLAMLSTHYRQPINWTRQGLGFAAKTLDKWYRIIGEAEAETGEGNPFETEIAD 348 Query: 354 ALYNDLNTVSAIQALHKL---ARESTKNHDLLPIFNASAHILGIEVCKE---HLNKNISI 407 L +DLNT S I LH L A + L F +A++LG+ E + +I Sbjct: 349 RLADDLNTPSVITHLHHLAEVAEHEEASSALRRRFKGAANLLGLLGDTETGWRARQKEAI 408 Query: 408 AIEK-----LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 A+++ L+ +RL K K F AD IR++L ++G +L D K+ ++R Sbjct: 409 ALDEGVIAGLIADRLAARKAKDFKRADQIREELAAQGVVLMDNKDGTTSWEVSR 462 >gi|319408293|emb|CBI81946.1| Cysteinyl-tRNA synthetase [Bartonella schoenbuchensis R1] Length = 502 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 224/501 (44%), Positives = 302/501 (60%), Gaps = 49/501 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL RK F ID + +R+YVCGPTVYD+AHIGNAR +IVFD+L+R LR+ YGE Sbjct: 4 LRFYNTLTRKKENFTPIDAAKVRLYVCGPTVYDYAHIGNARSVIVFDILFRFLRHVYGED 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITD+DDKI RA ++P + +NDAI +T QF KDT L CL PT QPR Sbjct: 64 HVIYARNITDVDDKINARAIHKYPELALNDAIRQLTECTYDQFQKDTEALGCLLPTSQPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVPE 181 AT+H+ ++ LI+ ++ GHAY A N I+F SS+ P YG F++R +DE + +R+ Sbjct: 124 ATDHLEEIRSLIERLLEKGHAYIAGNHILFSISSMGEYPRYGEFAKRSLDEMRADSRIDI 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPW---GRGRPGWHIECSAMSSHYL----------- 227 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 184 AIYKKEKMDFVLWKPSQEWEPGWPSPAGIPGLGRPGWHIECSAMSMAKLLAPYGGGLNCD 243 Query: 228 ---GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 VFDIHGGG+DL+FPHHENEIAQSC A ++ AN W+HNGFL +EG+KMSKS GN Sbjct: 244 DLAANVFDIHGGGIDLLFPHHENEIAQSCSAFGTKRMANFWMHNGFLQVEGKKMSKSLGN 303 Query: 285 FITINELLETK--KFGG-------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 FITI LLE+ +F ++W IR +ML THYREP+++T RL ++ L Sbjct: 304 FITIRSLLESDFLEFNDALTDEIRQNWAGLSIRFSMLQTHYREPLNWTTHRLAQSSSELY 363 Query: 336 KWPQTSTSKGI-------IDPAVLSALYNDLNTVSAIQALHKLARES-----TKNHDLLP 383 +W + + ID ++++ L +DLNT +A L K +E + DL Sbjct: 364 RWYEFLRCEKCCLDDDKSIDESLINTLSDDLNTSNAFTILRKFYKEGNAIALARGMDLFG 423 Query: 384 IFNASAHILGIE----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + IE V K +L+ I++ + ERL L+ K++ +AD IR +L G Sbjct: 424 LLRQE-WVQEIECPLFVRKTYLDLKF---IDQRIAERLQLIHNKEWEAADKIRDELAVGG 479 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 L+D K+P G+R+T W+ K Sbjct: 480 ISLKDEKDPQTGERITTWEIK 500 >gi|84686990|ref|ZP_01014873.1| cysteinyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654] gi|84664964|gb|EAQ11445.1| cysteinyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654] Length = 457 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/441 (48%), Positives = 270/441 (61%), Gaps = 17/441 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK +NT R F IDP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR YG Sbjct: 3 EIKFHNTATRSKEVFTPIDPDNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLREVYGP 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN TD+DDKIIERA ++ I ITS+ TQ ++ D L L PT P Sbjct: 63 NHVTYVRNFTDVDDKIIERANRD------GKEIDQITSETTQWYLDDMAALGALEPTAMP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI M+ +I+ +I GHAY A ++F S +YG S R +D+ G RV Sbjct: 117 RATQHIDDMVTMIEGLIDSGHAYAAEGHVLFAVDSYDDYGKLSGRSVDDMIAGARVEVAP 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK + EPGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 177 YKRNPMDFVLWKPARDGEPGWDSPWGRGRPGWHIECSAMSYGLLGESFDIHGGGNDLMFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA AN+W+HN L +EG+KMSKS GNF T+++LLE + P Sbjct: 237 HHENEIAQSKCAHAGAGFANVWLHNEMLQVEGKKMSKSLGNFFTVHDLLE------QGVP 290 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDPAVLSALYNDLNT 361 VIR L THYR+P+D+T ++ EAE L KW + S G + A++ A+ NDLNT Sbjct: 291 GEVIRFVFLGTHYRKPMDWTEKKREEAEATLGKWHRMRGSNKPGAVPKAIVDAVANDLNT 350 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC---KEHLNKNISIAIEKLVQERLI 418 AI LHKLA L + + E+ +E + +S KL Q R+ Sbjct: 351 PEAISVLHKLANIGDIEGLLGGLDFLGLKTIDTEMLDLIREGEQERLSELEAKLTQLRIG 410 Query: 419 LLKMKKFSSADYIRKQLESKG 439 + K +S D ++ L + G Sbjct: 411 AMNTKDYSQVDAMKSALIAAG 431 >gi|288959132|ref|YP_003449473.1| cysteinyl-tRNA synthetase [Azospirillum sp. B510] gi|288911440|dbj|BAI72929.1| cysteinyl-tRNA synthetase [Azospirillum sp. B510] Length = 458 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/476 (45%), Positives = 292/476 (61%), Gaps = 42/476 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ + P ++ MYVCGPTVYD AHIGNARP++VFD+L+RLL Y Sbjct: 3 LDLYNTLTRRKERFEPLRPDHVGMYVCGPTVYDTAHIGNARPVVVFDLLFRLLSRLY--P 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII+RAR + I +T++ T F D L L PT +PR Sbjct: 61 AVTYVRNITDVDDKIIDRARDS------GEPIDALTARTTDLFHADMDALNALRPTIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QMI LI +I G+AY A ++F S+P+YG SRR +++ G RV + Sbjct: 115 ATQHIGQMIALIATLIERGNAYAAEGHVLFSVPSMPSYGQLSRRSLEDMIAGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ +DF+LWK S+P +PGW+SPWGRGRPGWHIECSAM+ +LG FDIHGGGLDLIFPH Sbjct: 175 KRDASDFVLWKPSSPDQPGWDSPWGRGRPGWHIECSAMAKEHLGVTFDIHGGGLDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSCCA+ ++ A W+HNGF+ +EG KMSKS GNF T+++LL+ +P Sbjct: 235 HENEIAQSCCANGTDRLARTWVHNGFVTVEGEKMSKSLGNFFTVHDLLD-------EFPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVLSALYNDL 359 IRL +L HYR+P+DFT + + +A+ L +W Q + + + VL+AL +DL Sbjct: 288 EAIRLTLLSAHYRQPLDFTREGIRQAKGALDRWYQALRGDPAPAAAAVPFDVLAALEDDL 347 Query: 360 NTVSAIQALHKL------ARESTKNHDLLPIFNASAHILGI---------EVCKEHLNKN 404 N+ AI LH+L AR + A+ LG+ + Sbjct: 348 NSPLAIAHLHELATAVNKARSDAEKAAAKGALLAAGQQLGLLRQDPEAWFRWAPTGGVEG 407 Query: 405 ISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +S A +E+L+ +R K F+ AD IRK+L KG +LED G + T WK+ Sbjct: 408 LSDAEVERLIIDRKTARAAKNFAEADRIRKELADKGIVLED------GPQGTSWKR 457 >gi|56696997|ref|YP_167359.1| cysteinyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] gi|61216118|sp|Q5LRJ6|SYC_SILPO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56678734|gb|AAV95400.1| cysteinyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] Length = 465 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/443 (48%), Positives = 275/443 (62%), Gaps = 30/443 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R EF IDP N+RMYVCGPTVYD AH+GN RP++VFDVLYRLLR+ YG Sbjct: 4 IKLHNTRTRTKEEFVPIDPDNVRMYVCGPTVYDRAHLGNGRPVVVFDVLYRLLRHVYGAD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA + PI D IT++ TQ F+ D L L P H PR Sbjct: 64 HVTYVRNFTDVDDKINARAAER--GRPIGD----ITAETTQWFLDDMGALGALEPDHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I+ ++ GHAYEA ++F S +YG S R +D+ G RV Sbjct: 118 ATQYIPQMVAMIEELVAKGHAYEAEGHVLFAVDSWKEHYGKLSGRSVDDMIAGARVEVAP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF+LWK STP PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 178 YKKNPMDFVLWKPSTPDLPGWDSPWGRGRPGWHIECSAMSYELLGESFDIHGGGNDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA AN W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 238 HHENEIAQSCCAHPEGHFANFWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGIP 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----PAVLSALYNDL 359 VIR L THYR+P+D+T ++ EAE L KW + + ++ P + AL +DL Sbjct: 292 GEVIRFVFLSTHYRKPMDWTEKKAKEAEATLRKWWRLTAPLDEMEIKPSPQFIDALTDDL 351 Query: 360 NTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE------VCKEHLNKNISI--AIEK 411 NT AI LH+LA+E K++ L A +LG++ V + ++ + A Sbjct: 352 NTPGAIAELHRLAKE--KDYAAL---EAGLEMLGLQETVNFGVASFGFSTSVEVLEAAND 406 Query: 412 LVQERLILLKMKKFSSADYIRKQ 434 L + + K F AD ++K Sbjct: 407 LARRWMAYRDAKNFEEADRLKKS 429 >gi|149914707|ref|ZP_01903237.1| pyrroloquinoline quinone biosynthesis protein PqqB [Roseobacter sp. AzwK-3b] gi|149811500|gb|EDM71335.1| pyrroloquinoline quinone biosynthesis protein PqqB [Roseobacter sp. AzwK-3b] Length = 462 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/444 (47%), Positives = 275/444 (61%), Gaps = 20/444 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT R + ++P N+RMYVCGPTVYD AH+GNARP+IVFDVLYRLLR+ YG Sbjct: 3 IRLYNTKARAKQVLEPLNPDNVRMYVCGPTVYDRAHLGNARPVIVFDVLYRLLRHVYGPD 62 Query: 65 CVTYVRNITDIDDKIIERARQE-HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN TD+DDKI RA + +N I+ IT++ T F+ D L L P P Sbjct: 63 HVTYVRNFTDVDDKINARAIENVGKGGDVNAEIARITAQTTHWFLDDMGALGALEPDAMP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT +IPQMI +I+++I GHAYEA ++F S +YG S R +D+ G+RV Sbjct: 123 RATQYIPQMIAMIEDLIGRGHAYEAEGHVLFAVDSYADYGRLSGRSVDDMIAGSRVEVAP 182 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 183 YKRNPMDFVLWKPSSADLPGWDSPWGRGRPGWHIECSAMSHELLGESFDIHGGGNDLMFP 242 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA A IW+HN L +EG+KMSKS GNF T+++LLE P Sbjct: 243 HHENEIAQSCCAHPGSGFARIWMHNEMLQVEGKKMSKSLGNFFTVHDLLE------EGVP 296 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP--AVLSALYNDLN 360 VIR L THYR+P+D+T ++ EA+ L KW Q +G +P AV+ A+ +DLN Sbjct: 297 GEVIRFVFLSTHYRKPMDWTAEKAREAQATLRKWYRQAEQGEGNAEPYVAVVEAVSDDLN 356 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV-----CKEHLNKNISIAIEKLVQE 415 T AI LH+L++ ++ A+ LG+ ++S +L Q Sbjct: 357 TPKAITELHRLSQADDRS-----TLRATLRFLGLMADGVPDWAARPVADLSALETRLAQA 411 Query: 416 RLILLKMKKFSSADYIRKQLESKG 439 R ++ K FS D ++ L + G Sbjct: 412 RAAAMQSKDFSEVDRLKAALVAVG 435 >gi|182678882|ref|YP_001833028.1| cysteinyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|229558617|sp|B2IEE1|SYC_BEII9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|182634765|gb|ACB95539.1| cysteinyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 458 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/478 (43%), Positives = 293/478 (61%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F+ IDP+N+R+Y CGPTVYDF HIGN R +IVFD+L+R+LR YG Sbjct: 3 LQLYNTLTRQKDIFEPIDPANVRLYACGPTVYDFLHIGNGRMLIVFDLLFRVLRDLYGAD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI RA + I ++T + T F +D L CL PT +PR Sbjct: 63 HVRYVRNITDVDDKINARAAERGIDI------RVLTDEMTAIFHEDAKALNCLPPTVEPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ +MI +I+ ++ +GHAY A ++FD S+P+YG S+R +D+ G RV + Sbjct: 117 ATEHMAEMIAIIEKLVANGHAYIAEGHVLFDVPSMPDYGKLSKRPLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EPGWESPWGRGRPGWH+ECSAMS +LG+VFDIHGGG+DL+FPH Sbjct: 177 KRSPTDFVLWKPAKPEEPGWESPWGRGRPGWHLECSAMSWKHLGEVFDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQ+C A + AN+W+HNG L +EG+KMSKS GNF+TI ++L + WP Sbjct: 237 HENEVAQTCSAFGHDVMANVWMHNGHLQVEGQKMSKSLGNFLTIRDVL-------KDWPG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------AVLSALY 356 +R ML THYR+PID+T+ L E++ L +W + + I+P + AL Sbjct: 290 ETVRFTMLKTHYRQPIDWTLSSLRESQRELDRWYPVARAFDQINPDNIPGIPSSFRDALQ 349 Query: 357 NDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNI----------- 405 +DLNT AI L +L +++ + D A H+L ++++ Sbjct: 350 DDLNTPEAITILRRLYKDALETTDY-----AGVHLLLCGKLLGLFDQSLEKWKNWKPASF 404 Query: 406 ---SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ E L++ER K + +D++R L S G +L+ DN T W+ K Sbjct: 405 TVENVTFEDLIKEREEARAAKNWPKSDHLRDVLASYGIVLK-----DNKDGTTSWEAK 457 >gi|297717798|gb|ADI50042.1| cysteinyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13] Length = 452 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/455 (45%), Positives = 282/455 (61%), Gaps = 30/455 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R+ +F +DP++I+MYVCGPTVYDFAHIGNARP++VFD+L RLLR Y + Sbjct: 3 LKVYNTYSRQKEDFVPLDPTHIKMYVCGPTVYDFAHIGNARPVVVFDILSRLLRQLYPK- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI A+ I IT + Q + +D LA AP PR Sbjct: 62 -VTYVRNITDVDDKINAAAKAS------GQTIRTITERTIQAYNEDMAALAAFAPDVTPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI++I+++I +GHAY A ++F + YG SRR DE G RV + Sbjct: 115 ATDHIPEMIHMIEDLIANGHAYAAEGHVLFAVKTFGAYGKLSRRNHDELLAGARVEIAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS YLGK FDIHGGG+DL FPH Sbjct: 175 KRDPGDFVLWKPSDAETPGWDSPWGRGRPGWHIECSAMSEKYLGKTFDIHGGGIDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQSCCA++ + A W+HNG L + G KMSKS GNF T+ ELL +F G S Sbjct: 235 HENELAQSCCANKTDYFAKYWMHNGHLTVNGEKMSKSLGNFYTVRELL--SEFTGES--- 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVLSALYNDLN 360 +R ++ HYR+P+D + + + + + L + +G ID ++SAL +DLN Sbjct: 290 --LRYMLMSAHYRQPLDLSKELIHQCQASLDRLYGALRGIKVYEGGIDDQMMSALLDDLN 347 Query: 361 TVSAIQALHKLARESTKNHD------LLPIFNASAHILGI-EVCKEHLNKNISIA----I 409 A+ LH+LA + K D L AS ++LGI + E K ++A + Sbjct: 348 VPLALARLHELATATNKAEDPQQKSQLASTLKASGYLLGILQQDPEAWFKGATLANADEV 407 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ +R + F+ AD +R+QL G +LED Sbjct: 408 EALIAQRNQARSARDFAKADSLRQQLTDMGIVLED 442 >gi|119713265|gb|ABL97331.1| cysteinyl-tRNA synthetase [uncultured marine bacterium HF10_12C08] Length = 454 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 215/473 (45%), Positives = 288/473 (60%), Gaps = 38/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T +F+ IDP+N+RMYVCGPTVYD+AH+GNARP+IVFD+L+RLL+ YG Sbjct: 3 LMLYDTFTNSKKKFEPIDPNNVRMYVCGPTVYDYAHVGNARPVIVFDILFRLLQKIYGSG 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII A + N+ I ++T K F D + L PT +PR Sbjct: 63 NVTYVRNITDVDDKIILAANDQ------NEDIGMLTEKTINYFHDDAKYVGALKPTFEPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+MI LI+ +I AY A+ ++F ++ YG S + +DE G+RV + + Sbjct: 117 ATEHIPEMIELIEKLISKEFAYVADGNVLFSSNKFKEYGKLSGKNLDEMVAGSRVGVESY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK +DF+LWK S EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGG DLIFPH Sbjct: 177 KKEESDFVLWKPSKEDEPSWKSPWGDGRPGWHIECSAMSEKLLGENFDIHGGGQDLIFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA+ K AN W+HNGF+ +EG KMSKS+GNF+T+NEL + S+ Sbjct: 237 HENEIAQSECANN-NKFANYWVHNGFVTVEGNKMSKSDGNFVTVNELKD-------SFQG 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALYN 357 VIRL M+ THYR+P+++T L E++ L KW D ++ L + Sbjct: 289 EVIRLTMISTHYRQPLNWTKDNLNESKKTLDKWYTFLSNFNGDELKDANNDNEIMETLLD 348 Query: 358 DLNTVSAIQALHKLARE-STKNHDLLPIFNASAHILG---------IEVCKEHLNKNISI 407 D+NT AI LH+ +E + + L+ F SA++LG + KE+LN N + Sbjct: 349 DMNTPKAISVLHQKFKECQSGDKGLVSNFLYSANMLGLLNEKPSEWLSWKKENLNINTA- 407 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +E L+ +R K F AD IR +L+ G ILED + T WK K Sbjct: 408 QVELLIAQRNEARSNKNFDDADRIRNELDKMGVILEDQGDE------TTWKVK 454 >gi|158423408|ref|YP_001524700.1| cysteinyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] gi|172047950|sp|A8I4X6|SYC_AZOC5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|158330297|dbj|BAF87782.1| cysteinyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] Length = 462 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 223/474 (47%), Positives = 292/474 (61%), Gaps = 34/474 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F+ +DP+ +R+YVCGPTVYD AHIGNARP+IVFDVL+RLLR YG Sbjct: 2 ELRLYNTLTRSKDAFRPLDPNLVRLYVCGPTVYDHAHIGNARPVIVFDVLFRLLRRLYGA 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI RA + SI I + +T + F DT L CL P +P Sbjct: 62 DHVRYVRNITDVDDKINARAAER--SISIRE----LTEETYAWFRDDTAALGCLRPDVEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M LI+ ++ GHAY A ++F S+P YG SRR +DE G RV Sbjct: 116 RATEHILEMQALIERLVASGHAYVAEEHVLFHVPSMPEYGKLSRRPLDEMLNGARVDVAP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK ST +PGW SP G GRPGWHIECSAMS +LG+ FDIHGGG+DL Sbjct: 176 FKRDPMDFVLWKPSTEGQPGWPSPCGIATPGRPGWHIECSAMSWRHLGETFDIHGGGIDL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA A +W+HNGFL +EG KMSKS GNF+TI ELL Sbjct: 236 VFPHHENEIAQSRCAFDSGSMAQVWMHNGFLLVEGEKMSKSLGNFVTIRELLT------- 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKG-IIDPAVLS 353 WP V+RLAML THYR+PI++T Q + A L KW + T +G + + Sbjct: 289 DWPGEVLRLAMLSTHYRQPINWTRQGIGFAAKTLDKWYRVIGDVEAETGEGNPFESEIAD 348 Query: 354 ALYNDLNTVSAIQALHKL---ARESTKNHDLLPIFNASAHILGI--EVCKEHLNKN---I 405 L +DLN+ SAI LH L A + L F ++A+++G+ E E + + Sbjct: 349 RLGDDLNSPSAITHLHHLADVAEHEDASSALKRRFKSAANLMGLLHETETEWRARQRAAV 408 Query: 406 SI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 S+ AI L+ +R K + F++AD+IR+QL S+G +L D K+ +TR Sbjct: 409 SVDPDAIAALIADRNAARKARDFATADHIREQLASQGIVLMDNKDGTTSWELTR 462 >gi|254464102|ref|ZP_05077513.1| cysteinyl-tRNA synthetase [Rhodobacterales bacterium Y4I] gi|206685010|gb|EDZ45492.1| cysteinyl-tRNA synthetase [Rhodobacterales bacterium Y4I] Length = 460 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 219/450 (48%), Positives = 276/450 (61%), Gaps = 36/450 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK F+ ID SN+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR YGE Sbjct: 8 IKLHNTKTRKKEVFEPIDASNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLREIYGED 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RN TD+DDKI RA + I IT++ TQ F+ D L L P+H PR Sbjct: 68 QVTYARNFTDVDDKINARAAES------GRLIGEITAETTQWFLDDMGELGALEPSHMPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I+++I GHAY A ++F S + YG S R +D+ G RV Sbjct: 122 ATEYIPQMVAMIEDLISKGHAYAAEGHVLFAVDSWKDRYGRLSGRSVDDMIAGARVEVAP 181 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF+LWK ST PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 182 YKKNPMDFVLWKPSTDDLPGWDSPWGRGRPGWHIECSAMSYELLGETFDIHGGGNDLMFP 241 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA A W+HN L +EG+KMSKS GNF T+ +LL+ + +P Sbjct: 242 HHENEIAQSCCAHPEGDFARFWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGYP 295 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLSALYN 357 VIRL L THYR+P+D+T ++ EAE L KW + I+P AVL AL + Sbjct: 296 GEVIRLVFLQTHYRKPMDWTDKKAKEAEATLRKWRALTAG---IEPASSAAAAVLEALAD 352 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK-------NISIAIE 410 DLN+ AI LHKLA + L ASA +LG+ E + ++S E Sbjct: 353 DLNSAGAIAELHKLAADGDAAGLL-----ASAQMLGL--LTEEMGAWASAPSIDLSAFAE 405 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGF 440 KL + R ++ K FS D ++ G Sbjct: 406 KLFKTRQKAMESKDFSEVDKLKAAYVEAGL 435 >gi|114765791|ref|ZP_01444886.1| cysteinyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601] gi|114541898|gb|EAU44934.1| cysteinyl-tRNA synthetase [Roseovarius sp. HTCC2601] Length = 461 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/447 (47%), Positives = 270/447 (60%), Gaps = 20/447 (4%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I + N+ RK F+ IDP N+R+YVCGPTVYD AH+GNARP IVFDVL+RL+R Sbjct: 1 MDVPIWLTNSRTRKKELFEPIDPDNVRIYVCGPTVYDRAHLGNARPAIVFDVLFRLMRQV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + VTYVRN TD+DDKI RA+ SI IT++ TQ ++ D + + PT Sbjct: 61 YGPEHVTYVRNFTDVDDKINARAQASGRSI------GEITAETTQWYLDDMAAVGVMEPT 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H PRAT I QMI +I ++I GHAYEA ++F S YG S R +D+ G RV Sbjct: 115 HMPRATEFIDQMIAMIADLIEKGHAYEAEGHVLFAVESYKAYGGLSGRSVDDMIAGARVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K+NP DF+LWK S P PGWESPWGRGRPGWHIECSAMS LG FDIHGGG DL Sbjct: 175 VAPYKRNPMDFVLWKPSEPELPGWESPWGRGRPGWHIECSAMSYELLGASFDIHGGGNDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA A +W+HN L +EG+KMSKS GNF T+++LLE + G Sbjct: 235 MFPHHENEIAQSCCAHPEGGFAKVWLHNEMLQVEGKKMSKSLGNFFTVHDLLEGRD-GQA 293 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKGIIDPAVLSALYN 357 P VIR ML THYR+P+D+T ++ ++AE L KW T + V++AL + Sbjct: 294 GVPGEVIRFVMLSTHYRKPMDWTAEKASQAEATLKKWYAQITEALDNEVPYVGVVNALAD 353 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL-----GIEVCKEHLNKNISIAIEKL 412 DLNT AI +H+L+ P AS +L GI + ++S +KL Sbjct: 354 DLNTAKAIAEMHQLSLAGDT-----PSLRASLKLLGFLDHGIPDWARGPDFDLSELADKL 408 Query: 413 VQERLILLKMKKFSSADYIRKQLESKG 439 R ++ K FS D ++ L G Sbjct: 409 AAVRGAAMESKDFSEVDRMKAALLEAG 435 >gi|149204784|ref|ZP_01881747.1| cysteinyl-tRNA synthetase [Roseovarius sp. TM1035] gi|149141753|gb|EDM29806.1| cysteinyl-tRNA synthetase [Roseovarius sp. TM1035] Length = 467 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/452 (46%), Positives = 278/452 (61%), Gaps = 32/452 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R+ EF +D N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG + Sbjct: 4 IKLHNTRTRRKEEFTPLDKDNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGAE 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA + SI IT++ TQ F+ D L L P H PR Sbjct: 64 HVTYVRNFTDVDDKINARAAESGRSI------GEITAETTQWFLDDMAALGALEPDHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I+ +I GHAYEA ++F S YG S R +D+ G RV Sbjct: 118 ATQYIPQMVAMIEGLIAKGHAYEAEGHVLFAVDSWREGYGKLSGRSVDDMIAGARVEVAP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S+ PGW+SPWGRGRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 178 YKRNPMDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAHELLGESFDIHGGGNDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + A +W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 238 HHENEIAQSCCAHPEGEFAKVWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGIP 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGIIDPAVLSALYNDLNT 361 VIR L THYR+P+D+T ++ EAE L KW G + L+ LY+DLNT Sbjct: 292 GEVIRFVFLSTHYRKPMDWTAEKAEEAEKTLRKWRGLVQGAETGQVQEIELAPLYDDLNT 351 Query: 362 VSAIQALHKLARE-----STKNHDLLP-IFNASAHILGI------EVCKEHLN--KNISI 407 IQ L +AR T + P F A+A +LG+ + +H + ++S+ Sbjct: 352 HGVIQRLRAMARAIELGIDTPEGTVTPGDFLATARMLGLLEDGMGDWIAQHADDLSDLSL 411 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 ++K ER+ + K F+ D ++ L G Sbjct: 412 TLDK---ERMKAKQTKDFTIVDALKSALTDAG 440 >gi|163793631|ref|ZP_02187606.1| cysteinyl-tRNA synthetase [alpha proteobacterium BAL199] gi|159181433|gb|EDP65948.1| cysteinyl-tRNA synthetase [alpha proteobacterium BAL199] Length = 463 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/479 (45%), Positives = 288/479 (60%), Gaps = 42/479 (8%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++KI NTL R F+ IDPS++RMYVCGPTVYDFAH+GNARP++VFDVL RLLR Y Sbjct: 4 QPELKITNTLTRAKEAFRPIDPSHVRMYVCGPTVYDFAHVGNARPVVVFDVLVRLLRRLY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRNITD++DKI RA++ + I +T++ Q+ D L P Sbjct: 64 PR--VTYVRNITDVEDKINARAKEN------GEPIEALTARTAAQYQADMDALGAERPDV 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPRAT+HI QMI LI+ +I GHAY A+ ++F S+P+YG SRR D+ G RV Sbjct: 116 QPRATHHIAQMITLIERLIAKGHAYAADGHVLFAVPSMPDYGGLSRRDRDDMIAGARVEV 175 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K++PADF+LWK S+ PGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGGLDLI Sbjct: 176 APYKQDPADFVLWKPSSDDIPGWDSPWGRGRPGWHIECSAMSWEHLGETFDIHGGGLDLI 235 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA AN W+HNGF+ +EG KMSKS GNF T++++L + Sbjct: 236 FPHHENEIAQSRCAFGTHTMANYWMHNGFVTVEGEKMSKSLGNFYTVHDVL-------KE 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDP------AVLS 353 WP IRL +L +HYR P+DFT L EA+ L + Q + + ++P +++ Sbjct: 289 WPGEAIRLLLLSSHYRAPLDFTSAGLKEAKAQLDRLYQALRNAADVAVEPEAPAGDELMA 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS------- 406 AL +DLN A+ LH+ K D A + +LG L + Sbjct: 349 ALLDDLNVPLAVARLHEAVGRLNKATDPAERSAAKSALLGGGALLGLLQADPEAWFQGGG 408 Query: 407 ------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+Q R+ K + F+ AD IR L++ G LED G + T WK+ Sbjct: 409 DDDLDPAEIERLIQARVDARKGRDFAEADRIRDALKANGVELED------GPQGTTWKR 461 >gi|209964298|ref|YP_002297213.1| cysteinyl-tRNA synthetase CysS [Rhodospirillum centenum SW] gi|226710848|sp|B6ISG4|SYC_RHOCS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|209957764|gb|ACI98400.1| cysteinyl-tRNA synthetase CysS [Rhodospirillum centenum SW] Length = 456 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/474 (45%), Positives = 285/474 (60%), Gaps = 40/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R F IDPSN+R+YVCGPTVYD+AH+GNAR FD+L RLL++ Y Sbjct: 3 LTLYNTLTRSEEAFTPIDPSNVRLYVCGPTVYDYAHVGNARTFSAFDLLARLLKHLYPR- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKII+R+++ + I +T++ T QF D L L P +PR Sbjct: 62 -VTYARNITDVDDKIIDRSQRS------GEPIDGVTARTTAQFHADMDALGLLRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIPQMI +I ++ G AY A ++F ++P+YG SRR DE G RV + Sbjct: 115 ATTHIPQMIAMIGRLVEQGFAYAAEGHVLFHVPAMPDYGRLSRRSQDELIAGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK + P EPGW+SPWG GRPGWHIECSAM++ +LG VFDIHGGGLDLIFPH Sbjct: 175 KRSPADFVLWKPAKPGEPGWDSPWGTGRPGWHIECSAMTAAHLGAVFDIHGGGLDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN+W+H+GFL + G KMSKS GNF T+ ELL+ +P Sbjct: 235 HENEIAQSRCAHGTAVMANVWMHSGFLTIAGDKMSKSLGNFYTVRELLD-------EFPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-----VLSALYNDL 359 IRLA+L HYR+P+DFT +++ +A+ L +W + A VL+AL +DL Sbjct: 288 EAIRLALLSAHYRQPLDFTKEKIAQAKQALDRWYGVLRGLEEVRAAEVPFDVLAALEDDL 347 Query: 360 NTVSAIQALHKLA-----RESTKNHDLLPIFNASAHILG-IEVCKEHLNKNISIAIEKL- 412 NT AI LH+LA ++ L A+A +LG + + + + L Sbjct: 348 NTPLAISHLHELATAFHKADAAARPGLAGRLKAAAGLLGFLRQDPDAWFRGTPKGTDGLD 407 Query: 413 -------VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +Q R K K F+ AD IR L +G +LED G + T WK+ Sbjct: 408 EAAIEAAIQARKEARKAKDFAEADRIRAALLEQGIVLED------GPQGTSWKR 455 >gi|83953795|ref|ZP_00962516.1| cysteinyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1] gi|83841740|gb|EAP80909.1| cysteinyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1] Length = 486 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/469 (44%), Positives = 282/469 (60%), Gaps = 45/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK +F ID N+RMYVCGPTVYD AH+GNARP+IVFDVL RLLR+ YG+ Sbjct: 4 IKLHNTKTRKREDFTPIDDKNVRMYVCGPTVYDRAHLGNARPVIVFDVLNRLLRHVYGDA 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA + SI IT++ TQ F+ D + L P H PR Sbjct: 64 HVTYVRNFTDVDDKINARAAESGRSI------GEITAETTQWFLDDMAEVGALEPDHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IPQM+ +I+++I GHAY A ++F S YG+ S R ID+ G RV + Sbjct: 118 ATAYIPQMVAMIEDLIAKGHAYAAEGHVLFSVESYKAYGALSGRSIDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK--------------- 229 K+NP DF+LWK S PGW+SPWGRGRPGWHIECSAM+ L K Sbjct: 178 KRNPMDFVLWKPSDDATPGWDSPWGRGRPGWHIECSAMADELLWKEPLRQDRLSDEAKSA 237 Query: 230 --VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 VFDIHGGGLDL FPHHE+EIAQSCCA+ ++ A W+HN L +EG+KMSKS GNF T Sbjct: 238 PHVFDIHGGGLDLQFPHHEDEIAQSCCANGTDEMARYWLHNEMLQVEGKKMSKSLGNFFT 297 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL----------SKW 337 + +LL+ + P VIR ML THYR+P+D+TV++ EAE L ++ Sbjct: 298 VRDLLD------QGVPGEVIRFVMLSTHYRKPMDWTVEKQVEAEATLFGYISTLESYEEF 351 Query: 338 PQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLA---RESTKNHDLLPIFNASAHIL 392 P + +DP+ ++SAL DL+T A+ L L + S DL+ + S L Sbjct: 352 PVSLEKARELDPSPEIISALARDLDTYGALGVLKTLRDRNKASQLARDLVFLGFYSWSGL 411 Query: 393 GIEVC-KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +V + + +++S KL + R + + K F+ D+++ QL+ GF Sbjct: 412 ETKVAERSDIKRDLSKLASKLEEVRTVAKETKDFTELDHLKTQLDLAGF 460 >gi|262277058|ref|ZP_06054851.1| cysteinyl-tRNA synthetase [alpha proteobacterium HIMB114] gi|262224161|gb|EEY74620.1| cysteinyl-tRNA synthetase [alpha proteobacterium HIMB114] Length = 448 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 218/450 (48%), Positives = 283/450 (62%), Gaps = 24/450 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL R +F ID NIRMYVCGPTVYD+ H+GNARP+IVFD+L+RLL Y Sbjct: 3 LKISNTLTRSKEKFIPIDEKNIRMYVCGPTVYDYPHVGNARPLIVFDLLFRLLSKIYSTS 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKIIE + + I I D +TSK T+ F D L CL PT +P+ Sbjct: 63 KVTYVRNITDIDDKIIEASNK--SKISIQD----LTSKVTKDFHDDCNYLGCLNPTIEPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ +MI LI+ +I + AYE+N + F + YG+ S +KI+E G+RV + Sbjct: 117 ATEHLNEMINLIKKLIQNDFAYESNGHVYFQVTKFKKYGNLSNKKIEELISGSRVEVSDN 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK S EP W+SP+G+GRPGWH+ECSAMS YLG FDIHGGGLDLIFPH Sbjct: 177 KKEPGDFVLWKPSKENEPSWDSPFGKGRPGWHLECSAMSEKYLGNHFDIHGGGLDLIFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA+ EK +N W+HNG++ +E +KMSKS GNFITINEL K + G+ Sbjct: 237 HENEIAQSTCANNNEKFSNYWLHNGYVTVEKQKMSKSLGNFITINEL--KKNYNGQ---- 290 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAML THY +P D+ + L ++ L KW + S K I L L +DLNT Sbjct: 291 -VVRLAMLSTHYTQPFDWNEKILDVSQKSLDKWYEFYSDEKEEISEENLKFLLDDLNTPL 349 Query: 364 AIQALHKLARESTKNHDL-LPIFNASAHILGIEVCKEH--------LNKNISIAIEKLVQ 414 I +H+L +++ L ++S ILG+ + H + K + IEKL+ Sbjct: 350 MISNIHELYKKAKTGDSLSAKQLSSSCKILGL-FNQTHDEWKNFKKIGKITAEEIEKLIS 408 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILED 444 ER K F ++D IR L SKG +++D Sbjct: 409 ERNKARSKKDFKTSDEIRDLLVSKGVLIKD 438 >gi|159044247|ref|YP_001533041.1| cysteinyl-tRNA synthetase [Dinoroseobacter shibae DFL 12] gi|187629812|sp|A8LLR2|SYC_DINSH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157912007|gb|ABV93440.1| cysteinyl-tRNA synthetase [Dinoroseobacter shibae DFL 12] Length = 458 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/444 (45%), Positives = 272/444 (61%), Gaps = 25/444 (5%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+ NT R+ F IDP N+RMYVCGPTVYD AH+GNARP +VFD+L+R+LR YG Sbjct: 5 ELKLTNTKTRRKEVFTPIDPDNVRMYVCGPTVYDRAHLGNARPAVVFDMLFRVLREVYGP 64 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRNITD+DDKI RA + +I IT + T +++D L L PTH P Sbjct: 65 EHVTYVRNITDVDDKINARAAE------TGRSIREITDETTGWYLEDMAALGTLPPTHVP 118 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT +IPQM+ +I+ +I GHAY A ++FD S YG+ S R +D+ G RV Sbjct: 119 RATEYIPQMVAMIETLIARGHAYVAEGHVLFDVRSYGAYGALSGRSVDDMIAGARVEVAP 178 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL FP Sbjct: 179 YKRDPMDFVLWKPSEAGLPGWDSPWGRGRPGWHIECSAMSHELLGESFDIHGGGNDLQFP 238 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA A +W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 239 HHENEIAQSCCAHPEGGFAKVWMHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGVP 292 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---KGIIDPAVLSALYNDLN 360 VIR L THY +P+D+T ++ EA +L KW P+V++AL +DLN Sbjct: 293 GEVIRFVFLGTHYSKPMDWTERKRDEAMAVLRKWRAAVAGTRPAPAAAPSVMAALVDDLN 352 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGI---EVCKEHLNKNISIA--IEKLVQE 415 T AI LH+L R+ LP ASA ++G+ E+ + + ++ +L + Sbjct: 353 TPGAIAELHQLYRDGN-----LPGLLASAQLMGLLSDEMGGWDSSPQVDLSELAARLAEV 407 Query: 416 RLILLKMKKFSSADYIRKQLESKG 439 R + K F+ D ++ L + G Sbjct: 408 REAAIGTKDFTQVDRMKAALIAAG 431 >gi|99080994|ref|YP_613148.1| cysteinyl-tRNA synthetase [Ruegeria sp. TM1040] gi|123378967|sp|Q1GHI0|SYC_SILST RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|99037274|gb|ABF63886.1| cysteinyl-tRNA synthetase [Ruegeria sp. TM1040] Length = 457 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/445 (46%), Positives = 273/445 (61%), Gaps = 26/445 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N+ RK F IDP N++MYVCGPTVYD AH+GNARP++VFDVL+RLLR+ YG+K Sbjct: 4 IKLHNSKTRKKEVFTPIDPDNVQMYVCGPTVYDRAHLGNARPVVVFDVLFRLLRHVYGDK 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RN TD+DDKI RA + AI ITS+ Q F++D L L PTH PR Sbjct: 64 KVTYARNFTDVDDKINTRAAES------GRAIGEITSETIQWFLEDMGALGALQPTHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQMI +I+ +I HAYEA ++F S YG S R +D+ G RV Sbjct: 118 ATEYIPQMIAMIEELIARDHAYEAEGHVLFAVDSWREGYGQLSGRSVDDMIAGARVEVAP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF+LWK S +PGWESPWGRGRPGWHIECSAMS LG+ FDIH GG DL+FP Sbjct: 178 YKKNPMDFVLWKPSDADQPGWESPWGRGRPGWHIECSAMSHDLLGESFDIHCGGNDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ + A W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 238 HHENEIAQSCCANPEGEFARYWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGIP 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLSALYN 357 V+R L THYR+P+D+T ++ EAE L KW + I+P AV+ AL + Sbjct: 292 GEVVRFVFLQTHYRKPMDWTEKKAAEAEATLRKWRALTAG---IEPAATAAAAVVDALSD 348 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE--KLVQE 415 DLNT AI +HKLA + + L +LG E+ + ++ ++ +L + Sbjct: 349 DLNTAGAIAEMHKLA--AAGDGAGLLAAGQLVGLLGDEMGEWAAAPSVDLSAHEARLFKA 406 Query: 416 RLILLKMKKFSSADYIRKQLESKGF 440 R ++ K FS D ++ G Sbjct: 407 RQAAMETKDFSEVDRLKAAYTEAGL 431 >gi|298290922|ref|YP_003692861.1| cysteinyl-tRNA synthetase [Starkeya novella DSM 506] gi|296927433|gb|ADH88242.1| cysteinyl-tRNA synthetase [Starkeya novella DSM 506] Length = 464 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 216/457 (47%), Positives = 283/457 (61%), Gaps = 25/457 (5%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R F ++PS +RMYVCGPTVYDFAHIGNARP+IVFD+LYRLLR+ YG Sbjct: 11 ELKLYNTLTRAKETFVPLEPSQVRMYVCGPTVYDFAHIGNARPVIVFDLLYRLLRHLYGA 70 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V YVRNITD+DDKI RA E P + +N+AI+ +T QF D L L P +P Sbjct: 71 EHVKYVRNITDVDDKINARAASEFPGLDLNEAIAKVTFTTEAQFHDDLEALGVLHPDVEP 130 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M LI+ ++ GHAY A + ++F S+P+YG S R +++ G RV Sbjct: 131 RATEHIAEMRVLIERLVASGHAYVAEDHVLFSVPSMPDYGQLSHRPLEDMIAGARVDVAP 190 Query: 184 HKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++ DF+LWK S P EPGW SP G GRPGWHIECSAMS +LG+ FDIHGGG+DL Sbjct: 191 YKQDAMDFVLWKPSKPGEPGWLSPAGIAVPGRPGWHIECSAMSWKHLGETFDIHGGGIDL 250 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENE+AQS CA A +W+HNGFL +EG KMSKS GNF+TI +LL Sbjct: 251 VFPHHENEVAQSRCAFHANIMAKVWMHNGFLQVEGEKMSKSLGNFVTIRDLLA------- 303 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--AVLSALYND 358 WP V+RL ML THYR+PID+TV+ L E+ L +W + P AVL AL +D Sbjct: 304 DWPGEVLRLNMLKTHYRQPIDWTVKGLEESAKTLEQWFDAAAPDAYPRPAAAVLEALADD 363 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE-------VCKEHLNKNISIA-IE 410 LNT AI +H L K+H + LG E + I A IE Sbjct: 364 LNTPKAIAEMHAL-----KDHAGKKALAGTLAFLGFEPGPFREWAAAQAPELTIPEAEIE 418 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + ER+ + + ++++D IR +L + G L+D K+ Sbjct: 419 ARIAERIEARRNRDWAASDRIRDELMALGVALKDNKD 455 >gi|294084247|ref|YP_003551005.1| cysteine--tRNA ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663820|gb|ADE38921.1| Cysteine--tRNA ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 465 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/467 (43%), Positives = 277/467 (59%), Gaps = 42/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF +DP++I +Y CGPTVYD H+GNARP++VFDVL RLLR YG Sbjct: 4 LKLYNTLTRQKDEFVPLDPAHIGIYACGPTVYDRIHVGNARPIVVFDVLVRLLRRQYG-- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII RA + N +I+ + + + F DT L AP +PR Sbjct: 62 TVTYVRNITDVDDKIIARADER------NMSIATLCADTIKSFHADTESLLTKAPDAEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI M+ +I+ +I +G AYEA ++F +P YG SRR +D+ G RV + Sbjct: 116 ATKHIDGMVAMIKTLIANGFAYEAEGHVLFHVKQMPTYGGLSRRSMDDMIAGARVEVAPY 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ +DFILWK S+ +PGW+SPWGRGRPGWHIECSAMS YLG+VFDIH GGLDLIFPH Sbjct: 176 KRDASDFILWKPSSQAQPGWDSPWGRGRPGWHIECSAMSKFYLGEVFDIHAGGLDLIFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSCCA +K AN W+HNGF+ +EG MSKS G+F+T+ + + + Sbjct: 236 HENEIAQSCCAHNTDKMANYWLHNGFVTVEGETMSKSTGHFVTVADAVAKHR-------G 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLSALYNDLN 360 V+R +L HYR P+DF+ +A L + + + +D A L L +DLN Sbjct: 289 EVVRYILLSAHYRAPLDFSDHAAFDARNSLDRLYRAVGDVAADETKVDAAFLDCLCDDLN 348 Query: 361 TVSAIQALHKLARESTKNHDLLPI-FNASAHILGI--------------EVCKEHLNKNI 405 T +A+ LH+LAR + K I +SA ++G+ ++ + Sbjct: 349 TPAAMARLHELARLANKGDAAAAIALKSSAEVMGLLGQTGDAWGKGEIKDLSSSMTREPT 408 Query: 406 SIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 S A I+ + R + + F+ AD IR +L + G LED Sbjct: 409 SSAQLEVDNSDIDAKIAARNVARNRRDFAEADRIRDELAADGIHLED 455 >gi|220921630|ref|YP_002496931.1| cysteinyl-tRNA synthetase [Methylobacterium nodulans ORS 2060] gi|219946236|gb|ACL56628.1| cysteinyl-tRNA synthetase [Methylobacterium nodulans ORS 2060] Length = 460 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/465 (44%), Positives = 279/465 (60%), Gaps = 32/465 (6%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R F ID N+RMY CGPTVYD AHIGN RP+IVFD+L+RLLR+ Sbjct: 1 MAPLLRLYNTLTRAKEPFAPIDAGNVRMYACGPTVYDAAHIGNGRPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE VTYVRN+TD+DDKI RA + SI +T + F D RL L P Sbjct: 61 YGEGAVTYVRNVTDVDDKINARAAERGISI------RALTDETLAAFHADLRRLGVLMPE 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT HI +M +I+ ++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGQRPVFIEPRATEHIREMAMMIERLVAAGHAYVAEEHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S P EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMEAGARVDVAPYKRSPLDFVLWKPSKPNEPAWPSPCGIAAPGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GG+DL+FPHHENE+AQS C AN+W+HNGFL +EG KMSKS GNF+ Sbjct: 235 LGETFDIHAGGIDLVFPHHENEVAQSRCCFGTPVMANVWLHNGFLQVEGDKMSKSLGNFV 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 T+ E+L WP V+RLAML THYR+PID+T++ L EA + +W +T G Sbjct: 295 TLREVLA-------DWPGEVVRLAMLRTHYRQPIDWTLRALEEASRTIDRWYETVGDTGP 347 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLAREST-KNHDLLPIFNASAHILGIEVCKEHLN 402 + A+ AL +DLNT SA+ LH+L + K +L F S + Sbjct: 348 AAEVPAALRDALLDDLNTPSALGELHRLDDPAALKAGAMLMGFLGSTRSARAQAAVAASG 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +++ +E+L+ ER + ++ +D +R L + G L+D K+ Sbjct: 408 VDVA-TVERLIAERKAARAARNWAESDRLRDALAAMGVTLKDNKD 451 >gi|170738802|ref|YP_001767457.1| cysteinyl-tRNA synthetase [Methylobacterium sp. 4-46] gi|168193076|gb|ACA15023.1| cysteinyl-tRNA synthetase [Methylobacterium sp. 4-46] Length = 460 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/472 (43%), Positives = 276/472 (58%), Gaps = 46/472 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R F IDPS +RMY CGPTVYD AHIGN RP+IVFD+L+RLLR+ Sbjct: 1 MAPLLRLYNTLTRAKEPFAPIDPSRVRMYACGPTVYDAAHIGNGRPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTYVRN+TD+DDKI RA + SI +T + F D RL L P Sbjct: 61 YGADAVTYVRNVTDVDDKINARAAERGVSI------RTLTDETLAGFHADLRRLGVLMPE 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M +I+ ++ GHAY A + ++FD S+P+YG+ SRR Sbjct: 115 DVNRPGARPAFIEPRATDHIAEMAQMIERLVAAGHAYLAEDHVLFDVPSMPDYGALSRRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S P EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMEAGARVDVAPYKRSPLDFVLWKPSKPGEPAWPSPCGIAAPGRPGWHIECSAMSWRH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GG+DL+FPHHENE+AQS C AN+W+HNGFL +EG KMSKS GNF+ Sbjct: 235 LGETFDIHAGGIDLVFPHHENEVAQSRCCFGTPVMANVWLHNGFLQVEGDKMSKSLGNFV 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG- 345 T+ E+L WP +RLAML THYR+PID+T++ L EA L +W ++ G Sbjct: 295 TLREVLA-------DWPGEAVRLAMLRTHYRQPIDWTLRALEEASRTLERWYESVGDLGP 347 Query: 346 --IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-------EV 396 + V AL +DLNT +A+ LH+L + A A ++G+ Sbjct: 348 APAVPEGVRDALLDDLNTPAALGELHRLEDPAA--------LKAGAGLMGLLGATRSARA 399 Query: 397 CKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I + A+E L+ R K ++ +D +R L G ++D K+ Sbjct: 400 EAAVAASGIDVAAVEGLIAARKAARAAKNWAESDRLRGALAGMGVTVKDNKD 451 >gi|330814242|ref|YP_004358481.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063] gi|327487337|gb|AEA81742.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063] Length = 430 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 209/447 (46%), Positives = 277/447 (61%), Gaps = 34/447 (7%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 +N+R+YVCGPTVYD+ H+GNARP+IVFD+L+RLL +G++ V YVRNITD+DDKI+E A Sbjct: 4 NNVRVYVCGPTVYDYPHVGNARPLIVFDLLFRLLNKIFGKEKVQYVRNITDVDDKILESA 63 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 + + N +I +T + + F D + L CL PT +P+AT+HI +MI L +I Sbjct: 64 KSK------NISIQDLTKEVIKDFQDDCSYLNCLTPTKEPKATDHIQEMIELTTKLIEKK 117 Query: 144 HAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 AY + F+ S +YGS S +KIDE G+RV KK+P DF+LWK S EPG Sbjct: 118 FAYIEKGHVYFEVSKYKDYGSLSNKKIDELISGSRVEISKSKKSPVDFVLWKPSLEDEPG 177 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W+SPWG+GRPGWH+ECSAMS YLGK FDIHGGGLDLIFPHHENEIAQS CA+ A Sbjct: 178 WDSPWGKGRPGWHLECSAMSEKYLGKEFDIHGGGLDLIFPHHENEIAQSTCANETNLLAK 237 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNG++ + KMSKS+GNFITINEL KF G+ VIRLAML THY +P D+ Sbjct: 238 FWMHNGYVTVNKEKMSKSDGNFITINEL--KGKFDGQ-----VIRLAMLSTHYTQPFDWN 290 Query: 324 VQRLTEAEILLSKWPQ-TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--- 379 Q L + L+KW S IDP++L +L +DLNT I LHKL +E+ + Sbjct: 291 NQILENSYKSLNKWYDFYSDENETIDPSLLDSLKDDLNTPLFISQLHKLHQEAMDGNTKS 350 Query: 380 --------DLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 + +FN +A + K+ L+++ + L+QER + K F +D I Sbjct: 351 GKKLSTACKFIGLFNVNAEGWKDQKSKKSLSED---EVNILIQERNLARDNKDFKRSDEI 407 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWK 458 R L KG ++ED +N T WK Sbjct: 408 RDLLNDKGILIEDKENS------TTWK 428 >gi|83310335|ref|YP_420599.1| cysteinyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] gi|109894907|sp|Q2W7Y5|SYC_MAGMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|82945176|dbj|BAE50040.1| Cysteinyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] Length = 459 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 220/476 (46%), Positives = 277/476 (58%), Gaps = 45/476 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R F+ + P ++ MYVCGPTVYD AHIGNARP+IVFDVLYRLL+ Y V Sbjct: 5 LYNTLTRTKDVFEPLVPGHVGMYVCGPTVYDRAHIGNARPVIVFDVLYRLLKTLY--PSV 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITD+DDKI RA++ + IS IT + T F +D L CL P +PRAT Sbjct: 63 RYVRNITDVDDKINARAKES------GEPISAITERTTAMFHEDIGALNCLLPDVEPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI QMI +I+ +I G AY A ++F ++ +YG+ SRR DE G RV +KK Sbjct: 117 AHITQMIAMIERLIAKGFAYAAEGHVLFAVGAMADYGALSRRSSDEMIAGARVEVAPYKK 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGG DL+FPHHE Sbjct: 177 DPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMSLQHLGETFDIHGGGQDLVFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS CA+ + A W+HNG+L +EG KMSKS GNF T+ +LL+ P Sbjct: 237 NEIAQSTCANG-KPFARFWLHNGWLMVEGEKMSKSLGNFFTVRDLLDQA-------PGEA 288 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLSALYN 357 IRLAML THY +P D+T L +A+ L + ID VL+AL + Sbjct: 289 IRLAMLTTHYHQPFDWTADGLKQAKATLDRLYTALRGVADIDANGYEGEAPLEVLAALKD 348 Query: 358 DLNTVSAIQALHKLARESTKNHDL------LPIFNASAHILGIEVCK-EHLNKNISIA-- 408 DLNT AI LH+LA K L AS H+LG+ E K A Sbjct: 349 DLNTPLAISHLHELAGALNKATGLEDKARRKGALLASGHLLGLLYQDPEAWFKGTGAADG 408 Query: 409 -----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE + R K + F+ AD IR+ L ++G +LED G T WK+ Sbjct: 409 PSDAEIEAAITARAEARKSRNFAEADRIRQDLAARGVVLED------GAGGTTWKR 458 >gi|240141599|ref|YP_002966079.1| cysteine tRNA synthetase [Methylobacterium extorquens AM1] gi|240011576|gb|ACS42802.1| cysteine tRNA synthetase [Methylobacterium extorquens AM1] Length = 462 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/472 (43%), Positives = 285/472 (60%), Gaps = 44/472 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFVPIDPTNVRMYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTY RN+TD+DDKI RA + I I + +T QF +D L L Sbjct: 61 YGAAHVTYARNVTDVDDKINARALER--GITIRE----LTDGTLAQFHRDIRDLGVLMAG 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M LI+ +++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGEPARFIEPRATDHIAEMHRLIEGLVVAGHAYVAEGHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMESGARVEVAPYKRSPLDFVLWKPSKAGEPSWPSPCGIDLPGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GGLDLIFPHHENE+AQS C + A++W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGETFDIHAGGLDLIFPHHENEVAQSRCCFGTDVMAHVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 TI ++L+ WP V+RL ML THYR+PID+T++ L E+ +L +W + + Sbjct: 295 TIRQVLD-------DWPGEVVRLNMLKTHYRQPIDWTLRGLEESSRMLDRWYEAAGEAAP 347 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK 403 + V+ AL +DLNT +A+ LH+LA S A A ++G + + Sbjct: 348 DAEVPEGVVEALCDDLNTPAALGELHRLAGTSPS------ALKAGAGLMGFLAVTQAQRE 401 Query: 404 -------NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +A +E L+ ER K ++++D +R L + G ++D K+ Sbjct: 402 AERVGAAGIDVARVEALIAERKAARVAKDWAASDRVRDALTALGVSVKDNKD 453 >gi|126737778|ref|ZP_01753508.1| cysteinyl-tRNA synthetase [Roseobacter sp. SK209-2-6] gi|126721171|gb|EBA17875.1| cysteinyl-tRNA synthetase [Roseobacter sp. SK209-2-6] Length = 466 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/448 (45%), Positives = 269/448 (60%), Gaps = 23/448 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK +EF ID N+RMYVCGPTVYD AH+GNARP++VFD LYRLLR+ YG Sbjct: 4 IKLHNTKTRKKSEFTPIDAKNVRMYVCGPTVYDRAHLGNARPVVVFDTLYRLLRHVYGAD 63 Query: 65 CVTYVRNITDIDDKIIERA---RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI A ++ + + + +++ ++KD L + P H Sbjct: 64 HVTYVRNFTDVDDKINATAVARKEAGAEGTLEELVHARSNETIDWYLKDMGALGAMQPDH 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY-GSFSRRKIDEQKMGTRVP 180 PRAT +I M+ +I ++I GHAY A ++F S Y G S R +D+ G RV Sbjct: 124 MPRATEYIAPMVDMISDLISKGHAYAAEGHVLFAVDSWKEYYGRLSGRSVDDMIAGARVE 183 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +KKNP DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG FDIHGGG DL Sbjct: 184 VAPYKKNPMDFVLWKPSGDDLPGWDSPWGRGRPGWHIECSAMSYELLGDTFDIHGGGNDL 243 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA+ + A W+HN L +EG+KMSKS GNF T+ +LLE + Sbjct: 244 MFPHHENEIAQSCCANGDDSFARYWLHNEMLQVEGKKMSKSLGNFFTVRDLLE------Q 297 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDPA--VLSALYN 357 +P VIRL L THYR+P+D+T ++ EAE L KW T + PA VL A+ + Sbjct: 298 GYPGEVIRLVFLQTHYRKPMDWTDKKAKEAEATLRKWRALTDGVEPSAAPASSVLDAIAD 357 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-----EHLNKNISIAIEKL 412 DLNT A+ LHKLAR L AS ++G+ + E ++S +KL Sbjct: 358 DLNTAGAVAELHKLARAGDAAGLL-----ASGQLMGLLTNERGEWAETPKVDLSEYEDKL 412 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGF 440 + R ++ K FS D ++ G Sbjct: 413 AKARETAMESKDFSEVDRLKTAYIDAGL 440 >gi|254486794|ref|ZP_05099999.1| cysteinyl-tRNA synthetase [Roseobacter sp. GAI101] gi|214043663|gb|EEB84301.1| cysteinyl-tRNA synthetase [Roseobacter sp. GAI101] Length = 481 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/468 (46%), Positives = 269/468 (57%), Gaps = 50/468 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK +F ID N+RMYVCGPTVYD AH+GNARP+IVFDVLYRLLR+ YG Sbjct: 4 IKLHNTKTRKREDFVPIDSDNVRMYVCGPTVYDRAHLGNARPVIVFDVLYRLLRHVYGPD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA + SI IT++ TQ F+ D + L P H PR Sbjct: 64 HVTYVRNFTDVDDKINARAAESGRSI------GEITAETTQWFLDDMAAVGALEPDHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IPQMI +I+ +I GHAY A ++F S YG+ S R ID+ G RV + Sbjct: 118 ATAYIPQMIEMIEGLIAKGHAYAAEGHVLFAVESYKEYGALSGRSIDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG FDIHGGG DL+FPH Sbjct: 178 KRNPMDFVLWKPSDGDTPGWDSPWGRGRPGWHIECSAMSYELLGAHFDIHGGGNDLMFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSCCA AN W+HN L +EG+KMSKS GNF T+ +LL+ P Sbjct: 238 HENEIAQSCCAHPGAGFANYWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------HGVPG 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALYN 357 VIR ML THYR+P+D+T ++ EA+ L W + S+ IID L Sbjct: 292 EVIRYVMLSTHYRKPMDWTEKKADEAKRKLKSWYDLVKGVEASKASRIIID-----NLAE 346 Query: 358 DLNTVSAIQALHKLARESTKN---------------------HDLLPIFNASAHILGI-- 394 DLNT ++ L +LA + N +L F AS +LG+ Sbjct: 347 DLNTAFTLRQLDQLAGDIVHNDKFDGQFEAGVPNAPQMARSSSELRSEFKASLQLLGLIG 406 Query: 395 -EV--CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 EV E ++S L R + ++ K FS D I+ L G Sbjct: 407 DEVPSWSEETAFDLSRFQRSLEAARSVAMQTKDFSGVDQIKNMLIGAG 454 >gi|260433631|ref|ZP_05787602.1| cysteinyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157] gi|260417459|gb|EEX10718.1| cysteinyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157] Length = 466 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/450 (46%), Positives = 270/450 (60%), Gaps = 27/450 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R EF IDP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG + Sbjct: 4 IKLHNTRTRTKEEFVPIDPDNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGPE 63 Query: 65 CVTYVRNITDIDDKIIERA---RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI A +Q + + + + ++ D L L P Sbjct: 64 HVTYVRNFTDVDDKINATALARKQAGAEGTLEQLVQERSDETIGWYLHDMGALGALEPDQ 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVP 180 PRAT +I QMI +I+++I GHAYEA ++F S + YG S R +D+ G RV Sbjct: 124 MPRATRYIDQMIAMIEDLIAKGHAYEAEGHVLFAVDSWRDEYGRLSGRSVDDMIAGARVE 183 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +KKNP DF+LWK S PGWESPWGRGRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 184 VAPYKKNPMDFVLWKPSDDELPGWESPWGRGRPGWHIECSAMSYELLGESFDIHGGGNDL 243 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA + A W+HN L +EG+KMSKS GNF T+++LL+ + Sbjct: 244 MFPHHENEIAQSKCAHPHGEFARYWLHNEMLQVEGKKMSKSLGNFFTVHDLLD------Q 297 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-----IDPAVLSAL 355 P VIR L THYR+P+D+T ++ EAE+ L KW + + GI PAV+ AL Sbjct: 298 GVPGEVIRFVFLQTHYRKPMDWTEKKAREAEVTLRKW--RALTAGIEPAASAAPAVIEAL 355 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-----EVCKEHLNKNISIAIE 410 +DLNT A+ LH LA L ASA +LG+ E ++S + Sbjct: 356 ADDLNTAGALAELHHLASVGDAAALL-----ASARVLGLLEPDMGAWAETDGVDLSAHAD 410 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGF 440 +L + R ++ K FS D ++ + G Sbjct: 411 RLARVRAEAMQTKDFSEVDRLKAAYLAAGL 440 >gi|84503361|ref|ZP_01001430.1| cysteinyl-tRNA synthetase [Oceanicola batsensis HTCC2597] gi|84388271|gb|EAQ01222.1| cysteinyl-tRNA synthetase [Oceanicola batsensis HTCC2597] Length = 477 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/466 (44%), Positives = 277/466 (59%), Gaps = 48/466 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ N+ R+ F IDP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 3 EIRLTNSKTRRKEVFAPIDPENVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGA 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRN TD+DDKI RA ++ AI IT + + +D L L PTH+P Sbjct: 63 EAVTYVRNFTDVDDKINARAERD------GRAIREITDETIGWYHQDMEALGTLRPTHEP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+HIPQM+ +I+ +I GHAY A ++F S +YG+ S R +++ G RV Sbjct: 117 RATDHIPQMVAMIEGLIASGHAYAAEGHVLFSVDSYADYGALSGRSVEDMIAGARVEVAP 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S PGW+SPWGRGRPGWHIECSAM+ LG FDIHGGG+DL FP Sbjct: 177 YKRNPMDFVLWKPSPGDLPGWDSPWGRGRPGWHIECSAMADELLGPSFDIHGGGIDLQFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA AN+W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 237 HHENEIAQSCCARPEGGFANVWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGVP 290 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----AVLSALYNDL 359 VIR L THYR +D+T ++ +A+ L W + TS DP +V+ L NDL Sbjct: 291 GEVIRFVFLGTHYRNNMDWTEEKSQQAKETLKAWFRL-TSGVESDPYGLTSVVPYLANDL 349 Query: 360 NTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE----------VCKE---------- 399 NT + L LA+ HD A+ +G+E V KE Sbjct: 350 NTPGVLHELRNLAQ-----HDAAGQLKAAMEFIGLEASGDWWVPGSVSKEIDGFVSHVSW 404 Query: 400 --HLNKNISIAIEK----LVQERLILLKMKKFSSADYIRKQLESKG 439 L+ N+ + + L++ R+ +K K FSS D ++ L + G Sbjct: 405 SGDLDPNVESRLSEISAALLRARIQAMKTKDFSSVDEMKAYLVAAG 450 >gi|259419145|ref|ZP_05743062.1| cysteinyl-tRNA synthetase [Silicibacter sp. TrichCH4B] gi|259345367|gb|EEW57221.1| cysteinyl-tRNA synthetase [Silicibacter sp. TrichCH4B] Length = 457 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 244/373 (65%), Gaps = 22/373 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N+ RK F I+P N++MYVCGPTVYD AH+GNARP++VFDVL+RLLR+ YG + Sbjct: 4 IKLHNSKTRKKEVFIPINPDNVQMYVCGPTVYDRAHLGNARPVVVFDVLFRLLRHVYGAE 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RN TD+DDKI RA + IS ITS+ TQ F+ D L L PTH PR Sbjct: 64 HVTYARNFTDVDDKINARAAES------GREISEITSETTQWFLDDMGALGALEPTHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I+++I GHAY A ++F S YG S R +D+ G RV Sbjct: 118 ATQYIPQMVAMIEDLIARGHAYAAEGHVLFAVDSWREGYGQLSGRSVDDMIAGARVEVAP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF+LWK S +PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 178 YKKNPMDFVLWKPSDAAQPGWDSPWGRGRPGWHIECSAMSLDLLGESFDIHGGGNDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ + A W+HN L +EG+KMSKS GNF T+ +LLE + P Sbjct: 238 HHENEIAQSCCANPEGEFARYWLHNEMLQVEGKKMSKSLGNFFTVRDLLE------QGIP 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLSALYN 357 V+R L T YR+P+D+T ++ EAE L KW + I+P AVL L + Sbjct: 292 GEVVRFVFLQTLYRKPMDWTEKKAAEAEATLRKWRALTAG---IEPAATAAAAVLDTLAD 348 Query: 358 DLNTVSAIQALHK 370 DLNT AI +HK Sbjct: 349 DLNTAGAIAEMHK 361 >gi|163743240|ref|ZP_02150621.1| cysteinyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10] gi|161383428|gb|EDQ07816.1| cysteinyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10] Length = 496 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/451 (45%), Positives = 273/451 (60%), Gaps = 31/451 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R I+P ++R+Y+CGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 35 IKLHNTRTRGKEVLNPINPDDVRLYLCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGTD 94 Query: 65 CVTYVRNITDIDDKI----IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VTY RN TD+DDKI + R P + + + T + ++ D L L P Sbjct: 95 HVTYARNFTDVDDKINATALARKEAGAPGT-LEELVQERTEETISWYLADMAELGALEPD 153 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PRAT +IPQMI +I+ +I GHAY + ++F S +YG+ S R +D+ G RV Sbjct: 154 HMPRATAYIPQMIAMIEELIAKGHAYADGAGHVLFSVKSYKDYGALSGRSVDDMIAGARV 213 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++P DF+LWK ST PGW+SPWGRGRPGWHIECSAMS G FDIHGGG D Sbjct: 214 EVADNKRDPMDFVLWKPSTDELPGWDSPWGRGRPGWHIECSAMSHELFGDSFDIHGGGND 273 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQSCCA A IW+HN L +EG+KMSKS GNF T+ +LL+ Sbjct: 274 LMFPHHENEIAQSCCAHPEGDFAKIWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------ 327 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLS 353 + +P VIRL L THYR+P+D+T ++ EAE L +W +T I+P AV+ Sbjct: 328 QGYPGEVIRLVFLQTHYRKPMDWTDKKAKEAEATLRRWRALTTG---INPAPTASVAVID 384 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-----EHLNKNISIA 408 AL +DLNT A+ LHKLA T DLL SA +LG+ K + + ++S Sbjct: 385 ALSDDLNTAGALAELHKLASAETAA-DLL----TSARLLGLLTDKMGTWSQGEDHDLSHH 439 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + L R + ++ K F+ D ++ L + G Sbjct: 440 EKSLFDARQVAIETKDFAEVDRLKTALIAAG 470 >gi|254510796|ref|ZP_05122863.1| cysteinyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11] gi|221534507|gb|EEE37495.1| cysteinyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11] Length = 473 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/448 (45%), Positives = 265/448 (59%), Gaps = 23/448 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R F IDP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 12 IKLHNTRTRTKESFVPIDPDNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGPD 71 Query: 65 CVTYVRNITDIDDKIIERA---RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V Y RN TD+DDKI A +Q + + + + ++ D L L P Sbjct: 72 HVIYARNFTDVDDKINATALARKQAGADGTLEQLVQERSDETIGWYLHDMGALGALEPNA 131 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVP 180 PRAT +I QMI +I+++I GHAY A ++F S YG S R +D+ G RV Sbjct: 132 MPRATQYIAQMIAMIEDLIAKGHAYAAEGHVLFAVDSWREGYGKLSGRSVDDMIAGARVE 191 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +KKNP DF+LWK S+ PGW+SPWGRGRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 192 VAPYKKNPMDFVLWKPSSDELPGWDSPWGRGRPGWHIECSAMAYELLGESFDIHGGGNDL 251 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA + A +W+HN L +EG+KMSKS GNF T+++LLE + Sbjct: 252 MFPHHENEIAQSCCAHPEGEFARVWLHNEMLQVEGKKMSKSLGNFFTVHDLLE------Q 305 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---KGIIDPAVLSALYN 357 P VIR L THYR+P+D+T ++ +AE L KW + PAV+ AL + Sbjct: 306 GIPGEVIRFVFLQTHYRKPMDWTEKKARDAEATLRKWRALTAGIEPAASAAPAVIVALGD 365 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-----EVCKEHLNKNISIAIEKL 412 DLNT AI LH+LA E L ASA I+G+ E ++S E+L Sbjct: 366 DLNTAGAIAELHRLAAEGDAAGLL-----ASARIIGLLSDDMGAWVEAGAVDLSSYAERL 420 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGF 440 R+ ++ K F+ D ++ + G Sbjct: 421 AHARVAAMQSKDFAEVDRLKAAYIAAGL 448 >gi|83942575|ref|ZP_00955036.1| cysteinyl-tRNA synthetase [Sulfitobacter sp. EE-36] gi|83846668|gb|EAP84544.1| cysteinyl-tRNA synthetase [Sulfitobacter sp. EE-36] Length = 487 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/477 (44%), Positives = 273/477 (57%), Gaps = 62/477 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK +F ID N+RMYVCGPTVYD AH+GNARP+IVFDVL RLLR+ YG+ Sbjct: 4 IKLHNTKTRKREDFTPIDDKNVRMYVCGPTVYDRAHLGNARPVIVFDVLNRLLRHVYGDA 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA Q SI IT++ TQ F+ D + L P H PR Sbjct: 64 HVTYVRNFTDVDDKINARAAQSGRSI------GEITAETTQWFLDDMAAVGALEPDHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IPQM+ +I+++I GHAY A ++F S YG+ S R ID+ G RV + Sbjct: 118 ATAYIPQMVAMIEDLIAKGHAYAAEGHVLFSVESYKAYGALSGRSIDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK--------------- 229 K+NP DF+LWK S PGW+SPWGRGRPGWHIECSAM+ L K Sbjct: 178 KRNPMDFVLWKPSDDATPGWDSPWGRGRPGWHIECSAMADELLWKEPLRQDRLSDEAKSA 237 Query: 230 --VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 VFDIHGGGLDL FPHHE+EIAQSCCA+ ++ A W+HN L +EG+KMSKS GNF T Sbjct: 238 PHVFDIHGGGLDLQFPHHEDEIAQSCCANGTDEMARYWLHNEMLQVEGKKMSKSLGNFFT 297 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 + +LL+ + P VIR ML THYR+P+D+T ++ EA L+KW + Sbjct: 298 VRDLLD------QGVPGEVIRFVMLSTHYRKPMDWTEKKRDEATKTLTKWMDLTRDLEPC 351 Query: 348 DPA-------VLSALYNDLNTVSAIQALHKLARESTKNHD------------------LL 382 DPA ++ AL +DLNT A+ L+ L + K D Sbjct: 352 DPAAFKPDQKLIDALADDLNTHLALTYLNALTAQPQKLLDHARWLGFLSDKSREDDAKAR 411 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + S G EV E N +L + R + +K K FS+ D ++ L + G Sbjct: 412 AAYTTSFGSGGSEVETELAN--------RLDELRQMAMKTKDFSNVDALKSALLAAG 460 >gi|260428499|ref|ZP_05782478.1| cysteinyl-tRNA synthetase [Citreicella sp. SE45] gi|260422991|gb|EEX16242.1| cysteinyl-tRNA synthetase [Citreicella sp. SE45] Length = 474 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/385 (49%), Positives = 240/385 (62%), Gaps = 26/385 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I + N+ RK F+ IDP ++R+YVCGPTVYD AH+GNARP IVFDVL+RL+R YG Sbjct: 3 ISLTNSRTRKKEPFRPIDPEHVRIYVCGPTVYDRAHLGNARPAIVFDVLFRLMREVYGAD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA++ SI IT++ TQ ++ D + + PTH PR Sbjct: 63 HVTYVRNFTDVDDKINARAKESGRSI------GEITAETTQWYLDDMAAVGVMEPTHMPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I QM+ +I +I GHAYEA ++F S YG+ S R +D+ G RV + Sbjct: 117 ATQYIGQMVAMISELIEKGHAYEAEGHVLFAVESYTAYGALSGRSVDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK--------------- 229 K+NP DF+LWK S P PGWESPWGRGRPGWHIECSAM+ L K Sbjct: 177 KRNPMDFVLWKPSEPDLPGWESPWGRGRPGWHIECSAMAEELLWKTPLEEGRLSEAALAH 236 Query: 230 --VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 +FDIHGGG DL FPHHENEIAQSCCA+ +E A W+HN L +EG+KMSKS GNF T Sbjct: 237 PHLFDIHGGGNDLTFPHHENEIAQSCCANGVEHMAQTWLHNEMLQVEGKKMSKSLGNFFT 296 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 + +LL+ G P VIR ML THYR+P+D+T ++ E E L KW G Sbjct: 297 VRDLLDGHD-GLPGVPGEVIRFVMLSTHYRKPMDWTAEKAREGEATLRKWRAMVDGLEAG 355 Query: 346 IIDPAVLSALYNDLNTVSAIQALHK 370 + VL A+ +DLNT AI LHK Sbjct: 356 PVPEGVLKAVADDLNTAGAIAELHK 380 >gi|114768989|ref|ZP_01446615.1| cysteinyl-tRNA synthetase [alpha proteobacterium HTCC2255] gi|114549906|gb|EAU52787.1| cysteinyl-tRNA synthetase [alpha proteobacterium HTCC2255] Length = 455 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/452 (45%), Positives = 273/452 (60%), Gaps = 27/452 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN R F+ ID N+RMYVCGPTVYD AHIGNARP++VFD+LYRLLR+ YG Sbjct: 3 IKLYNVKNRTKEAFKPIDERNVRMYVCGPTVYDRAHIGNARPVVVFDILYRLLRHTYGIN 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V+Y RN TD+DDKI +A I +I IT++ +++D T L L P + PR Sbjct: 63 SVSYARNFTDVDDKINIKA------ISTGKSIREITNETINWYIEDMTALGALEPDYAPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +MI + +I GHAY A ++FD SS YG S R ID+ G RV + Sbjct: 117 ATEYISEMIEMSSELIKKGHAYVAEGHVLFDVSSYEAYGELSGRSIDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S +PGWESPWG GRPGWHIECSAM+ G+ FDIHGGGLDL FPH Sbjct: 177 KRNPMDFVLWKPSNNDQPGWESPWGFGRPGWHIECSAMARALFGEKFDIHGGGLDLQFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSC + AN+W+HN L +EG+KMSKS GNF ++ ELL+ K F G Sbjct: 237 HENEIAQSCACCGQDSFANVWLHNEMLQVEGKKMSKSLGNFFSVKELLD-KGFSGE---- 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPAVLSALYNDLNT 361 V+R L THY +P+D+TV++ EAE+ L KW + + + I V+ AL +DLNT Sbjct: 292 -VVRFVYLSTHYSKPMDWTVKKAEEAELTLRKWRKLTNGVQVTKHISKGVIDALNDDLNT 350 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGI------EVCKEHLNKNISIAIEKLVQE 415 A+ LH LA+ + +SA ILG+ KE+ ++S E ++ Sbjct: 351 SKALTVLHGLAKSGN-----IEELKSSAQILGLLSDQMGAWVKEN-TFDLSKLEEIILAS 404 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 R +K K+F+ D ++ S G ++ K+ Sbjct: 405 RDKAMKTKEFTELDNLKNLFISAGLDVQMSKD 436 >gi|85703328|ref|ZP_01034432.1| cysteinyl-tRNA synthetase [Roseovarius sp. 217] gi|85672256|gb|EAQ27113.1| cysteinyl-tRNA synthetase [Roseovarius sp. 217] Length = 472 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/453 (45%), Positives = 282/453 (62%), Gaps = 37/453 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R+ F+ +D N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG + Sbjct: 4 IKLHNTKTRRKEVFEPLDKDNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGPE 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT---- 120 VTYVRN TD+DDKI RA + SI S IT++ TQ F+ D L L P+ Sbjct: 64 HVTYVRNFTDVDDKINARAAESGRSI------SEITAETTQWFLDDMAALGALEPSIRND 117 Query: 121 --HQ---PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQK 174 HQ PRAT +IPQM+ +I+ +I GHAYEA ++F S +YG S R +D+ Sbjct: 118 PDHQKAMPRATQYIPQMVAMIEGLIAKGHAYEAEGHVLFAVDSWREHYGKLSGRSVDDMI 177 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G RV +K+NP DF+LWK S+ PGW+SPWGRGRPGWHIECSAM+ LG+ FDIH Sbjct: 178 AGARVEVAPYKRNPMDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAHELLGESFDIH 237 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL+FPHHENEIAQSCCA + A W+HN L +EG+KMSKS GNF T+ +LLE Sbjct: 238 GGGNDLMFPHHENEIAQSCCAHPEGEFARYWLHNEMLQVEGKKMSKSLGNFFTVRDLLE- 296 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KGIIDP 349 + P VIR L THYR+P+D+T ++ EA+ L KW + + +D Sbjct: 297 -----QGIPGEVIRFVFLSTHYRKPMDWTAEKAREAKETLWKWQNLTDGAERNRRPYLD- 350 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-EVCKEHLNKNISIA 408 V+ AL +DLNT AI LH+ +E+ D F ++ +LGI + ++ + K++ A Sbjct: 351 -VIEALSDDLNTSLAISLLHQKFKEARTQDDANRFF-STLSLLGIGQNWRDGVRKSVEKA 408 Query: 409 ------IEKLVQERLILLKMKKFSSADYIRKQL 435 +++L+++ K + ++D IR L Sbjct: 409 FTTSGLLDRLIEQMEEARAKKDWKTSDQIRDAL 441 >gi|23015242|ref|ZP_00055024.1| COG0215: Cysteinyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 460 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/477 (45%), Positives = 280/477 (58%), Gaps = 46/477 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R F+ + P ++ MYVCGPTVYD AHIGNARP+IVFDVLYRLL+ Y V Sbjct: 5 LYNTLTRTKDVFEPLVPGHVGMYVCGPTVYDRAHIGNARPVIVFDVLYRLLKTLY--PSV 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRN+TD+DDKI +A+ + IS+IT + T F +D L CL P +PRAT Sbjct: 63 RYVRNVTDVDDKINAKAKA------TGEPISVITERTTALFHEDIGALNCLMPDVEPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI QMI +I+ +I G AY A ++F ++ +YG+ SRR DE G RV +KK Sbjct: 117 AHIGQMIAMIERLIEKGFAYAAEGHVLFAVGAMADYGALSRRSSDEMIAGARVEVAPYKK 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGG DL+FPHHE Sbjct: 177 DPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMSLQHLGETFDIHGGGQDLVFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS CA+ + A W+HNG+L +EG KMSKS GNF T+ +LL G++ P Sbjct: 237 NEIAQSTCANG-KPFARFWLHNGWLMVEGEKMSKSLGNFFTVRDLL------GQA-PGEA 288 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSALYN 357 IRLAML THY +P D+T L +A+ L + +D + +L+AL + Sbjct: 289 IRLAMLATHYHQPFDWTSDGLKQAKATLDRLYTALRGAADVDASGYEAEVPLEMLAALKD 348 Query: 358 DLNT-VSAIQALHKLARESTKNHDL------LPIFNASAHILGIEVCK-EHLNKNISIA- 408 DLNT + I LH+LA K L AS H+LG+ E K A Sbjct: 349 DLNTPLXPISHLHELAGALNKATGLEDKARRKGALLASGHLLGLLYQDPEAWFKGTGAAD 408 Query: 409 ------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE + R K K F+ AD IR+ L +KG +LED G T WK+ Sbjct: 409 GPADAEIEAAIIARTEARKAKNFAEADRIRQDLAAKGVVLED------GAGGTTWKR 459 >gi|218533086|ref|YP_002423902.1| cysteinyl-tRNA synthetase [Methylobacterium chloromethanicum CM4] gi|218525389|gb|ACK85974.1| cysteinyl-tRNA synthetase [Methylobacterium chloromethanicum CM4] Length = 462 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/477 (43%), Positives = 285/477 (59%), Gaps = 54/477 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFVPIDPTNVRMYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTY RN+TD+DDKI RA + I I + +T QF +D L L Sbjct: 61 YGPAHVTYARNVTDVDDKINARALER--GITIRE----LTDGTLAQFHRDIRDLGVLMAD 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M LI+ ++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGEPARFIEPRATDHIAEMHRLIEGLVAAGHAYVAEGHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMESGARVEVAPYKRSPLDFVLWKPSKAGEPSWPSPCGIDLSGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GGLDLIFPHHENE+AQS C + A++W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGETFDIHAGGLDLIFPHHENEVAQSRCCFGTDVMAHVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------P 338 TI ++L+ WP V+RL ML THYR+PID+T++ L E+ +L +W P Sbjct: 295 TIRQVLD-------DWPGEVVRLNMLKTHYRQPIDWTLRGLEESSRMLDRWYEAAGEARP 347 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK 398 +G+++ AL +DLNT +A+ LH+LA S A A ++G Sbjct: 348 DAGAPEGVVE-----ALCDDLNTPAALGELHRLAGTSPS------ALKAGAGLMGFLAVT 396 Query: 399 EHLNK-------NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + I +A +E L+ ER K ++++D +R L + G ++D K+ Sbjct: 397 QAQREAERVGAAGIDVARVEALIAERKAARAAKDWAASDRVRDALTAMGVSVKDNKD 453 >gi|163736517|ref|ZP_02143936.1| hypothetical protein RGBS107_15336 [Phaeobacter gallaeciensis BS107] gi|161390387|gb|EDQ14737.1| hypothetical protein RGBS107_15336 [Phaeobacter gallaeciensis BS107] Length = 465 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/447 (44%), Positives = 269/447 (60%), Gaps = 23/447 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R I+P ++R+Y+CGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 4 IKLHNTRTRGKEVLNPINPDDVRLYLCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGTD 63 Query: 65 CVTYVRNITDIDDKI----IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VTY RN TD+DDKI + R P + + + T + ++ D L L P Sbjct: 64 HVTYARNFTDVDDKINATALARKEAGAPGT-LEELVQERTEETISWYLADMAELGALEPD 122 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PRAT +IPQMI +I+ +I GHAY + ++F S +YG+ S R +D+ G RV Sbjct: 123 HMPRATAYIPQMIAMIEELIAKGHAYADGAGHVLFSVKSYKDYGALSGRSVDDMIAGARV 182 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++P DF+LWK ST PGW+SPWGRGRPGWHIECSAMS G FDIHGGG D Sbjct: 183 EVADNKRDPMDFVLWKPSTDELPGWDSPWGRGRPGWHIECSAMSHELFGDSFDIHGGGND 242 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQSCCA A IW+HN L +EG+KMSKS GNF T+ +LL+ Sbjct: 243 LMFPHHENEIAQSCCAHPEGDFAKIWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------ 296 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDP--AVLSALY 356 + +P VIRL L THYR+P+D+T ++ EAE L KW Q +T+ +P V++AL Sbjct: 297 QGYPGEVIRLVFLQTHYRKPMDWTDKKAKEAEATLRKWYQLAATALDNEEPYVGVINALS 356 Query: 357 NDLNTVSAIQALHKL--ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAI--EKL 412 +DLNT AI LH+L A ++ L ++G + +NI + + KL Sbjct: 357 DDLNTAQAIAELHQLFHAGDAASMRASLKFMG----LMGADTPTWATGENIDLTLYERKL 412 Query: 413 VQERLILLKMKKFSSADYIRKQLESKG 439 R + ++ K FS D ++ + G Sbjct: 413 SDAREVAMQSKDFSEVDRLKAAFVAAG 439 >gi|254564109|ref|YP_003071204.1| cysteine tRNA synthetase [Methylobacterium extorquens DM4] gi|254271387|emb|CAX27400.1| cysteine tRNA synthetase [Methylobacterium extorquens DM4] Length = 462 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/472 (43%), Positives = 284/472 (60%), Gaps = 44/472 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFAPIDPTNVRMYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTY RN+TD+DDKI RA + I I + +T QF +D L L Sbjct: 61 YGPAHVTYARNVTDVDDKINARALER--GITIRE----LTDGTLAQFHRDIRDLGVLMAD 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M LI+ ++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGEPARFIEPRATDHIAEMHRLIEGLVAAGHAYVAKGHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMESGARVEVAPYKRSPLDFVLWKPSKAGEPSWPSPCGIDLPGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GGLDLIFPHHENE+AQS C + A++W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGETFDIHAGGLDLIFPHHENEVAQSRCCFGTDVMAHVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STS 343 TI ++L+ WP V+RL ML THYR+PID+T++ L E+ +L +W + + Sbjct: 295 TIRQVLD-------DWPGEVVRLNMLKTHYRQPIDWTLRGLEESSRMLDRWYEAAGEAVP 347 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK 403 + V+ AL +DLNT +A+ LH+LA S A A ++G + + Sbjct: 348 DAEVPEGVVEALCDDLNTPAALGELHRLAGTSPS------ALKAGAGLMGFLAVTQAQRE 401 Query: 404 -------NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +A +E L+ ER K ++++D +R L + G ++D K+ Sbjct: 402 AARVGAAGIDVARVEALIAERKAARAAKDWAASDRVRDALTALGVSVKDNKD 453 >gi|110834996|ref|YP_693855.1| cysteinyl-tRNA synthetase [Alcanivorax borkumensis SK2] gi|123050340|sp|Q0VML5|SYC_ALCBS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110648107|emb|CAL17583.1| Cysteinyl-tRNA synthetase [Alcanivorax borkumensis SK2] Length = 460 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 216/480 (45%), Positives = 284/480 (59%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL K +F +DP+ I +YVCGPTVY+F HIGNARP++VFDVLYRLL+ Y Sbjct: 3 LRLQNTLTGKKDDFIPLDPNRITLYVCGPTVYNFVHIGNARPVVVFDVLYRLLQRLY--P 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKII+ A +AIS +T + TQ F D L P+ P+ Sbjct: 61 NVVYARNITDIDDKIIKAAADN------GEAISTLTERFTQAFADDMASLNAKTPSIIPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI +I ++ GHAYEA+ +++F S+P+YG S RK+++ G RV + Sbjct: 115 ATDHIPEMIQMIAILVEKGHAYEADGQVLFAVESMPDYGKLSGRKLEDMLAGARVEVADY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DFILWK ST +PGW+SPWGRGRPGWHIECSAM +LG V DIHGGG DLIFPH Sbjct: 175 KRHPGDFILWKPSTDEQPGWDSPWGRGRPGWHIECSAMIHKHLGDVIDIHGGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ CCA + W+HNG++N++G KMSKS GNF + +LL ++ G + Sbjct: 235 HENEIAQGCCAHGTDYV-RYWLHNGYINIDGEKMSKSLGNFRLVRDLL--TQYHGET--- 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE--------ILLSKWPQTSTSKGIIDP---AVLS 353 +R A+L +HYR P++F+ L AE LL + + G P VL Sbjct: 289 --LRFALLSSHYRSPLNFSADVLDNAEKGLDTLYYALLGRGETVAPEAGYQLPDNHPVLD 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-DLLP-------IFNASAHILGIEVCKEHLNKNI 405 AL +DLNT A+ ALH +A E K D P +L +E NKN+ Sbjct: 347 ALKDDLNTSEAVSALHAIAGELNKAELDDKPKLKAELLAAADLLGLLTVEPTAWFQNKNV 406 Query: 406 S------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 S AI+ LV+ER K K F+ AD IR+QL G LED + TRW + Sbjct: 407 SEDGLSNDAIDALVEERTQAKKDKNFARADEIRQQLTKAGIQLEDTR------EGTRWSR 460 >gi|188584469|ref|YP_001927914.1| cysteinyl-tRNA synthetase [Methylobacterium populi BJ001] gi|179347967|gb|ACB83379.1| cysteinyl-tRNA synthetase [Methylobacterium populi BJ001] Length = 462 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 208/472 (44%), Positives = 283/472 (59%), Gaps = 44/472 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFAPIDPTNVRMYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + VTY RN+TD+DDKI RA + +I +T QF KD L L Sbjct: 61 YGPEHVTYARNVTDVDDKINARALERGITI------RALTDGTLAQFHKDIRDLGVLMAE 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M LI+ ++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGEPARFIEPRATDHIGEMHRLIEGLVAAGHAYVAEGHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMEAGARVEVAPYKRSPLDFVLWKPSKAGEPSWPSPCGIDAPGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LGK FDIH GG+DLIFPHHENE+AQS C + A++W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGKTFDIHAGGIDLIFPHHENEVAQSRCCFGTDVMAHVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---TSTS 343 TI ++L+ WP V+RL ML THYR+PID+T++ L E+ +L +W + + Sbjct: 295 TIRQVLD-------DWPGEVVRLNMLKTHYRQPIDWTLRGLEESSRMLDRWYEAAGEAAP 347 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI---EVCKEH 400 + V+ AL +DLNT +AI LH+LA A A ++G K Sbjct: 348 DAAVPGGVVEALGDDLNTPAAIGELHRLAGSDAG------ALKAGAGLMGFLPTTKAKRE 401 Query: 401 LNK----NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + I +A +E L+ ER K ++++D +R L + G ++D K+ Sbjct: 402 AERVGAAGIDVARVEALIAERKAARAAKDWAASDRVRDALTALGVSVKDNKD 453 >gi|254708550|ref|ZP_05170378.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|261316050|ref|ZP_05955247.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|261305076|gb|EEY08573.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] Length = 470 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/468 (45%), Positives = 282/468 (60%), Gaps = 52/468 (11%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG + VTY RNITD+DDKI RA + Sbjct: 1 MRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGAQHVTYARNITDVDDKINARAAR 60 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 ++P +P N+AI +T QF D T L L PT QPRAT H+ +M +I ++ G A Sbjct: 61 DYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQPRATEHMDEMRAMIDRLVQRGVA 120 Query: 146 YEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 Y A + ++F S++ P YG+ +RR +DE G RV +K++ DF+LWK S Sbjct: 121 YVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKG 180 Query: 201 EPGWESPWG---RGRPGWHIECSAMSSHYL-----GKV---------FDIHGGGLDLIFP 243 EPGW SP G GRPGWHIECSAMS L G + FDIHGGG+DL+FP Sbjct: 181 EPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGGLKCDDPERNQFDIHGGGIDLVFP 240 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-----ETKKFG 298 HHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSKS GNFITI ++L + ++G Sbjct: 241 HHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSKSLGNFITIRDVLNDGLPQLGEWG 300 Query: 299 GRS----WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----- 349 + W RL+ML THYREPI++T QRL E+ L +W +G P Sbjct: 301 DNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESADELHRWYGLLRDEGFGAPEKLSH 360 Query: 350 --AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 AV +AL +DLN+ +AI AL R++ K D+ + A ++G+ ++ I Sbjct: 361 ASAVAAALCDDLNSWAAITAL----RQAFKVRDVAALGEGMA-LMGLLDPYFVTASDVPI 415 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 AI + ERL + K ++ AD IR +L +G L++ + Sbjct: 416 FARADVDASAIAARIAERLNFINAKNWAEADRIRDELLQEGVQLKEAR 463 >gi|260575276|ref|ZP_05843276.1| cysteinyl-tRNA synthetase [Rhodobacter sp. SW2] gi|259022536|gb|EEW25832.1| cysteinyl-tRNA synthetase [Rhodobacter sp. SW2] Length = 480 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 264/467 (56%), Gaps = 39/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN R +F +D +N+RMYVCGPTVYD AHIGNARP++VFDVL+RLLR+ YGE Sbjct: 4 IRLYNGKTRAKEDFTPLDAANVRMYVCGPTVYDRAHIGNARPVVVFDVLFRLLRHVYGEG 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI +A I IT + + D L L PTH+PR Sbjct: 64 HVTYVRNFTDVDDKINAKA------AATGRPIRAITDETIAWYHADMDALGALRPTHEPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I QMI +I +I GHAY A ++FD S P+YG S R ID+ G RV + Sbjct: 118 ATEYIGQMIAMIAGLIASGHAYAAEGHVLFDVRSYPDYGRLSGRSIDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S PGW+SPWG GRPGWHIECSAMS LG FDIHGGG+DL FPH Sbjct: 178 KRDPMDFVLWKPSDAATPGWDSPWGYGRPGWHIECSAMSDALLGASFDIHGGGIDLQFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA + A +W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 238 HENEVAQSACAHPGQGFAQVWMHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGVPG 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGII-----------DP 349 VIRL L THY +P+D+T ++ +AE L W Q S ++ D Sbjct: 292 EVIRLVYLGTHYSKPMDWTAEKAAQAEATLRDWYLHLHQHGFSADMVRVLKEAGQWKADD 351 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFN---ASAHILGIEVCK 398 + L NDLNT AI LH LA+ T +LL N A + I V + Sbjct: 352 EFIGVLSNDLNTSGAIARLHVLAKNRTAATLAPFAFGLELLGFVNDWSMLAELAHIGVSQ 411 Query: 399 E-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 H + + L+ ER + F+ AD IR L G + D Sbjct: 412 SGHHEPWVESVVAGLLFERQEARASRNFAVADRIRDVLTEAGVQVTD 458 >gi|163854141|ref|YP_001642184.1| cysteinyl-tRNA synthetase [Methylobacterium extorquens PA1] gi|163665746|gb|ABY33113.1| cysteinyl-tRNA synthetase [Methylobacterium extorquens PA1] Length = 462 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/472 (43%), Positives = 283/472 (59%), Gaps = 44/472 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFVPIDPTNVRMYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTY RN+TD+DDKI RA + I I + +T QF +D L L Sbjct: 61 YGPAHVTYARNVTDVDDKINARALER--GITIRE----LTDGTLAQFHRDIRDLGVLMAD 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M LI+ ++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGEPARFIEPRATDHIAEMHRLIEGLVAAGHAYVAEGHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMESGARVEVAPYKRSPLDFVLWKPSKAGEPSWPSPCGIDLPGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GGLDLIFPHHENE+AQS C + A++W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGETFDIHAGGLDLIFPHHENEVAQSRCCFGTDVMAHVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTS 343 TI ++L+ WP V+RL ML THYR+PID+T++ L E+ +L +W + Sbjct: 295 TIRQVLD-------DWPGEVVRLNMLKTHYRQPIDWTLRGLEESSRMLDRWYEAAGEAAP 347 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK 403 + V+ AL +DLNT +A+ LH+LA S A A ++G + + Sbjct: 348 GAEVPEGVVEALCDDLNTPAALGELHRLAGTSPS------ALKAGAGLMGFLAVTQAQRE 401 Query: 404 -------NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +A +E L+ ER K ++++D +R L + G ++D K+ Sbjct: 402 AERVGAAGIDVARVEALIAERKAARAAKDWAASDRVRDALTAMGVSVKDNKD 453 >gi|170751939|ref|YP_001758199.1| cysteinyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831] gi|170658461|gb|ACB27516.1| cysteinyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831] Length = 465 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/411 (46%), Positives = 257/411 (62%), Gaps = 33/411 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL F IDP ++R+Y CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MAPMLRLYNTLTGAKEAFAPIDPQHVRVYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + VTY RN+TD+DDKI RA + SI +T QF +D L L P Sbjct: 61 YGPEHVTYARNVTDVDDKINARAAERGVSI------RELTDGTLAQFHRDVRDLGVLMPE 114 Query: 121 H-----------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M+ +I+ ++ GHAY A + ++FD S+P+YG S+R Sbjct: 115 DVNLTGARPRFVEPRATDHIVEMVTMIEALVRAGHAYVAADHVLFDVPSMPDYGGLSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK + P EP W SP G GRPGWHIECSAMS+ + Sbjct: 175 LDEMEAGARVEVAPYKRSPLDFVLWKPAKPGEPSWPSPAGIAVAGRPGWHIECSAMSAKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GG+DLIFPHHENE+AQS C AN+W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGRTFDIHAGGIDLIFPHHENEVAQSRCCFGTPVMANVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTS 343 TI ++L WP V+RL ML T YR+PID+T++ L E+ +L +W + + Sbjct: 295 TIRDVLN-------DWPGEVVRLTMLKTQYRQPIDWTLRGLEESARVLDRWYNAAGDAPA 347 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI 394 I V+ AL +DLNT +AI LH+LA + L A A++LG Sbjct: 348 ASDIPVGVVEALCDDLNTPAAINELHRLAGGAEAQPGAL---RAGANLLGF 395 >gi|294677292|ref|YP_003577907.1| cysteinyl-tRNA synthetase [Rhodobacter capsulatus SB 1003] gi|294476112|gb|ADE85500.1| cysteinyl-tRNA synthetase [Rhodobacter capsulatus SB 1003] Length = 460 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/449 (43%), Positives = 267/449 (59%), Gaps = 30/449 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++N+ R+ F+ +DP ++RMY+CGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 2 IRLHNSKTRRKETFRPLDPRHVRMYLCGPTVYDRAHLGNARPVVVFDVLYRLLRHVYGAD 61 Query: 65 CVTYVRNITDIDDKI----IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VTYVRN TD+DDKI + R P + + I T + + D L L P Sbjct: 62 HVTYVRNFTDVDDKINATALARKEAGAPGT-LEELIRARTEETIGWYHADMDALGALRPD 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H+PRAT++I MI +I ++I+ GHAY + ++F S YG+ S R +D+ G RV Sbjct: 121 HEPRATDYIGAMITMIADLIVRGHAYAKDGHVLFRVRSYTEYGALSGRSVDDMIAGARVE 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG FDIH GG+DL Sbjct: 181 VAPFKEDPMDFVLWKPSDADLPGWDSPWGRGRPGWHIECSAMSYELLGASFDIHAGGIDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQSCCA AN+W+HN L +EG+KMSKS GNF T+ +LL+ + Sbjct: 241 QFPHHENEIAQSCCAHPEGGFANVWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------Q 294 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-----IDPAVLSAL 355 P VIR L THY +P+D+T ++ +AE L KW + + G+ + P VL AL Sbjct: 295 GIPGEVIRFVFLQTHYGKPMDWTAEKAAQAEATLRKW--RALTAGVAPSHEVAPGVLEAL 352 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-----EHLNKNISIAIE 410 +DLNT A+ LH L E + SA +LG+ + + + ++S Sbjct: 353 ADDLNTAGALAVLHGLTGEPA-------LLKGSAQMLGLLLDEMGDWAKAPEVDLSGFAA 405 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKG 439 KL R ++ K F+ D ++ L + G Sbjct: 406 KLSDLRAKAMETKDFAPVDALKSALMAAG 434 >gi|86138285|ref|ZP_01056859.1| cysteinyl-tRNA synthetase [Roseobacter sp. MED193] gi|85824810|gb|EAQ45011.1| cysteinyl-tRNA synthetase [Roseobacter sp. MED193] Length = 469 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 206/453 (45%), Positives = 273/453 (60%), Gaps = 33/453 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK +EF ID +N+RMY+CGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 8 IKLHNTKTRKKSEFTPIDANNVRMYLCGPTVYDRAHLGNARPVVVFDVLYRLLRHCYGAD 67 Query: 65 CVTYVRNITDIDDKI---IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI + + + + ++ T + ++ D +L L P H Sbjct: 68 HVTYVRNFTDVDDKINATALARKAAGAAGTLEELVAERTEETIGWYLSDMGKLGALEPGH 127 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PRAT +I QM+ +IQN+I GHAY + ++F S NYG S R +D+ G RV Sbjct: 128 MPRATQYIRQMVTMIQNLIAKGHAYADGAGHVLFSVKSYENYGQLSGRSVDDMIAGARVE 187 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK ST PGW+SPWGRGRPGWHIECSAMS LG FDIH GG DL Sbjct: 188 VADNKRDPMDFVLWKPSTEELPGWDSPWGRGRPGWHIECSAMSQELLGATFDIHAGGNDL 247 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA+ + A W+HN L +EG+KMSKS GNF T+++LL+ + Sbjct: 248 MFPHHENEIAQSCCANGDDSFARYWLHNEMLQVEGKKMSKSLGNFFTVHDLLD------Q 301 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLSA 354 P VIR L THYR+P+D+T ++ EAE L KW + I+P AVL A Sbjct: 302 GIPGEVIRFVFLQTHYRKPMDWTEKKAKEAEATLRKWRALTAG---IEPAANAAAAVLDA 358 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK-------NISI 407 L +DLNT AI +HKLA P ASA ++G+ E L ++S Sbjct: 359 LADDLNTAGAIAEMHKLAAAGDG-----PGLLASAQLMGL--LSEALGDWAATPDLDLSA 411 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +L+ R ++ K FS D ++ + G Sbjct: 412 YATQLLDARETAMQSKDFSQVDRLKAAFVAAGL 444 >gi|110680368|ref|YP_683375.1| cysteinyl-tRNA synthetase [Roseobacter denitrificans OCh 114] gi|123065404|sp|Q164A4|SYC_ROSDO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109456484|gb|ABG32689.1| cysteinyl-tRNA synthetase [Roseobacter denitrificans OCh 114] Length = 473 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/473 (44%), Positives = 284/473 (60%), Gaps = 39/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT R+ +F+ I+ ++RMYVCGPTVYD AH+GNARP+IVFDVLYRLLR+ YG Sbjct: 3 IKLYNTKTRRKEDFEPINKDDVRMYVCGPTVYDRAHLGNARPVIVFDVLYRLLRHTYGPD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT---- 120 VTYVRN TD+DDKI RA + S I+ IT++ TQ F+ D + L P+ Sbjct: 63 HVTYVRNFTDVDDKINARAAESGRS------IAEITAETTQWFLDDMAAVGALEPSIKDR 116 Query: 121 -HQ---PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 HQ PRAT +I QM+ +I+++I GHAY A ++F S YG+ S R ID+ G Sbjct: 117 DHQRAMPRATQYIAQMVTMIEDLIAKGHAYAAEGHVLFAVESYSKYGALSGRSIDDMIAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPW------GRGRPGWHIECSAMSSHYLGKV 230 RV +K+NP DF+LWK S PGW P GRGRPGWHIECSAM+ LG Sbjct: 177 ARVEVAPYKRNPMDFVLWKPSDDATPGWAGPVVGGKSIGRGRPGWHIECSAMAHDLLGAT 236 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGG DL+FPHHENEIAQS CA AN+W+HN L +EG+KMSKS GNF T+ + Sbjct: 237 FDIHGGGNDLMFPHHENEIAQSTCAG--HNFANVWMHNEMLQVEGKKMSKSLGNFFTVRD 294 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDP 349 LL+ + P VIR ML THYR+P+D+T ++ EAE L KW + T ++ P Sbjct: 295 LLD------QGVPGEVIRFVMLSTHYRKPMDWTEKKREEAEETLWKWKKLTDGAESSRRP 348 Query: 350 --AVLSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKEH 400 +++AL +DLNT AI LH+ E+ + D LL + G++V E Sbjct: 349 HLEIIAALKDDLNTPLAISILHRKFAEAKSDDDKNRFLSTLLLLGIGETWRDGVDVAVEE 408 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + +S+ IE L++ K ++++D R LES G ++ K+ + +R Sbjct: 409 AFQTVSL-IEALIESIEKARAQKDWATSDRTRDGLESAGVKVQISKDGVSWER 460 >gi|114570948|ref|YP_757628.1| cysteinyl-tRNA synthetase [Maricaulis maris MCS10] gi|122315352|sp|Q0AM03|SYC_MARMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114341410|gb|ABI66690.1| cysteinyl-tRNA synthetase [Maricaulis maris MCS10] Length = 461 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/464 (42%), Positives = 272/464 (58%), Gaps = 41/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++T+ R+ +F+ DP + MYVCGPTVY +AHIGNARP +VFD L+R+LR YGE Sbjct: 4 LTLFDTMARRKRDFEPTDPGRVTMYVCGPTVYSYAHIGNARPAVVFDTLFRVLRRLYGED 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITD+DDKIIE AR+ PI D ITS + D L PT +P Sbjct: 64 QVIYARNITDVDDKIIETARES--GKPIED----ITSHYADIYRADMGALGVTLPTIEPH 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI ++QN++ GHAYEA+ ++FD SS YG S R +D+ G RV + Sbjct: 118 ATDHIPEMIGMVQNLVYSGHAYEADGHVLFDVSSYEKYGRLSNRDLDDMIAGARVEVASY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK + EPGW+SPWGRGRPGWH+ECSAMS +LGK DIHGGG DL+FPH Sbjct: 178 KRSPADFVLWKPAKDDEPGWDSPWGRGRPGWHLECSAMSEKHLGKTIDIHGGGTDLVFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA + AN W+HNGFL + KMSKS GN +++L+ + +P Sbjct: 238 HENEIAQSVCAHKGAPMANYWLHNGFLTMGTDKMSKSLGNVQLVHDLI-------KDYPG 290 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVLSALYN 357 V+R A+L HYR P+ +T L + +L + + + + PA L AL++ Sbjct: 291 EVLRYALLTAHYRAPLTWTADLLAKTRRSLDRIYGVLRRLGEIEAAPSDVPPAFLEALHD 350 Query: 358 DLNTVSAIQALHKLARESTK----------NHDLLPIFNASAHILGIEVCK-------EH 400 DLNT A+ L +LA + K +LL A+A +LG+ Sbjct: 351 DLNTPKALSELFQLAGNANKALSDVEKAQAKGELL----AAAGMLGLGQADPDAWFGLTD 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ I+ L+ R + K + +AD +R +L + ++D Sbjct: 407 LDPAERARIDDLIVRRQTAREEKDWPTADAVRDELNALKVQVDD 450 >gi|310815554|ref|YP_003963518.1| cysteinyl-tRNA synthetase [Ketogulonicigenium vulgare Y25] gi|308754289|gb|ADO42218.1| cysteinyl-tRNA synthetase [Ketogulonicigenium vulgare Y25] Length = 453 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 270/447 (60%), Gaps = 23/447 (5%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I ++NT R+ F ++P+N+R+Y+CGPTVYD AH+GNARP++VFDVL RLLR+ YG Sbjct: 3 QITLHNTKTRQTEVFVPLNPANVRLYLCGPTVYDRAHLGNARPVLVFDVLVRLLRHVYGA 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RN TD+DDKI +RA SI IT + + D L P +P Sbjct: 63 DAVTYARNFTDVDDKINDRAAATGRSI------RDITDETIGWYHADMDALGADRPDLEP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+ IP M+ +I +I GHAY ++F S +YG+ S R +++ G RV Sbjct: 117 RATDWIPAMVEMITGLIDRGHAYATEGHVLFAVDSYADYGALSGRSVEDMIAGARVEVAP 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S +PGW+SPWG GRPGWHIECSAMS LG FDIHGGG+DL FP Sbjct: 177 FKRNPMDFVLWKPSDTDQPGWDSPWGHGRPGWHIECSAMSYGLLGASFDIHGGGIDLQFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA A WIHN L +EGRKMSKS GNF T+ +LL+ + P Sbjct: 237 HHENEIAQSCCAHPEASFARYWIHNEMLQVEGRKMSKSLGNFFTVRDLLD------QGVP 290 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGIIDPAVLSALYNDLNT 361 VIRL ML THY P+D+T + AE L KW + G IDP V++AL ++LNT Sbjct: 291 GEVIRLVMLGTHYSRPMDWTEDKRLTAEGALRKWRALTAGAAPGAIDPEVITALADNLNT 350 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGI--EVCKEHL--NKNISIAIEKLVQERL 417 AI ALH+LA L ASA +LG+ + + L + + + ++ L+ +R Sbjct: 351 AGAISALHRLANAGDAGGLL-----ASAQMLGLLQDGMGDWLAASGDDAALVDGLLADRA 405 Query: 418 ILLKMKKFSSADYIRKQLESKGFILED 444 + F++AD IR +L + G +L+D Sbjct: 406 AAKAARDFAAADAIRDRLVAAGVVLKD 432 >gi|83950345|ref|ZP_00959078.1| cysteinyl-tRNA synthetase [Roseovarius nubinhibens ISM] gi|83838244|gb|EAP77540.1| cysteinyl-tRNA synthetase [Roseovarius nubinhibens ISM] Length = 465 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/449 (45%), Positives = 264/449 (58%), Gaps = 31/449 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY-- 61 +IK++N+ R F +DP N+RMYVCGPTVYD AH+GNARP++VFD+LYRLLR+ Sbjct: 8 EIKLHNSRSRTKEVFTPLDPQNVRMYVCGPTVYDRAHLGNARPVVVFDMLYRLLRHVAKT 67 Query: 62 -GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 G VTY RN TD+DDKI RA + + I IT++ TQ F+ D L L P Sbjct: 68 NGWGKVTYARNFTDVDDKINARA------LASDRRIEEITAETTQWFLDDMAALGALEPD 121 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H PRAT +IPQMI +I+ +I HAY A ++F S YG S R +D+ G RV Sbjct: 122 HMPRATAYIPQMIAMIEGLIEGDHAYAAEGHVLFRVRSYKAYGGLSGRSVDDMIAGARVE 181 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S +PGWESPWG GRPGWHIECSAMS LG FDIHGGG DL Sbjct: 182 VAPFKEDPMDFVLWKPSDATQPGWESPWGYGRPGWHIECSAMSYEILGPSFDIHGGGNDL 241 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA + A +W+HN L +EG+KMSKS GNF T+ +LL+ + Sbjct: 242 MFPHHENEIAQSCCAHPEGEFAQVWMHNEMLQVEGKKMSKSLGNFFTVRDLLD------Q 295 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGIIDPAVLSALYND 358 P VIR L THYR+P+D+T ++ A+ L + G D V+ AL +D Sbjct: 296 GIPGEVIRFVFLSTHYRKPMDWTAEKARNAKNTLDHFLGLIVGVEPGEPDDEVVLALADD 355 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC--------KEHLNKNISIAIE 410 LNT A+ LH LA+E + + AS LG ++ +EH + +A E Sbjct: 356 LNTHKALTRLHTLAKEKKAD-----VLKASLLFLGFDLSTLESGWFGEEHYDGLAPLA-E 409 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKG 439 +L Q R + K FS D ++ L G Sbjct: 410 RLGQVRAAAMVSKDFSEVDRLKSALLEAG 438 >gi|254474999|ref|ZP_05088385.1| cysteinyl-tRNA synthetase [Ruegeria sp. R11] gi|214029242|gb|EEB70077.1| cysteinyl-tRNA synthetase [Ruegeria sp. R11] Length = 525 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/453 (44%), Positives = 267/453 (58%), Gaps = 35/453 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R I+P ++R+Y+CGPTVYD AH+GNARP++VFDVLYRLLR YG Sbjct: 61 IKLHNTRTRGKEVLDPINPDDVRLYLCGPTVYDRAHLGNARPVVVFDVLYRLLREVYGPD 120 Query: 65 CVTYVRNITDIDDKI----IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V+Y RN TD+DDKI + R P + + + T + ++ D L L P Sbjct: 121 HVSYARNFTDVDDKINATAVARKEAGAPGT-LEELVQERTEETISWYLADMAELGALEPD 179 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PRAT +IPQMI +I+ +I GHAY + ++F S +YG+ S R +D G RV Sbjct: 180 HMPRATAYIPQMIAMIEELIAKGHAYPDGAGHVLFSVKSYKDYGALSGRSVDAMIAGARV 239 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++P DF+LWK ST PGW+SPWGRGRPGWHIECSAMS G+ FDIHGGG D Sbjct: 240 EVADNKRDPMDFVLWKPSTDELPGWDSPWGRGRPGWHIECSAMSHELFGESFDIHGGGND 299 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQSCCA A IW+HN L +EG+KMSKS GNF T+ +LLE Sbjct: 300 LMFPHHENEIAQSCCAHPEGDFAKIWLHNEMLQVEGKKMSKSLGNFFTVRDLLE------ 353 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLS 353 + +P VIR L THYR+P+D+T ++ EAE L KW + I+P AV++ Sbjct: 354 QGYPGEVIRFVFLQTHYRKPMDWTDKKAKEAEATLRKWRALTAG---IEPAPSAAAAVIA 410 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK-------NIS 406 AL +DLNT A+ LHKLA L ASA ++G+ E L ++S Sbjct: 411 ALSDDLNTAGAVAELHKLASGGDAASLL-----ASAQLMGL--LTEELGAWAKGEEVDLS 463 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + L R + ++ K F+ D ++ G Sbjct: 464 VYEKALFDARTVAMESKDFAEVDRLKSAYLEAG 496 >gi|254785975|ref|YP_003073404.1| cysteinyl-tRNA synthetase [Teredinibacter turnerae T7901] gi|259511843|sp|C5BI15|SYC_TERTT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|237685828|gb|ACR13092.1| cysteine--tRNA ligase [Teredinibacter turnerae T7901] Length = 458 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/483 (42%), Positives = 282/483 (58%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R+ +F +DP+ I+MYVCGPTVY+ HIGNARP++VFD L+R+L+Y Y Sbjct: 3 LRIYNTATRQKEDFVPVDPAAIKMYVCGPTVYNLVHIGNARPVVVFDTLFRVLQYLY--D 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKI++ A + + IS + ++ ++ +D +L L PT P Sbjct: 61 NVIYARNITDIDDKIMKAAAEN------GEPISALAARYAAEYERDMAQLNALQPTIVPY 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ QMI + Q ++ GHAY A+ ++FD S+ +YG S R +++ G RV + Sbjct: 115 ATEHLEQMIAMTQALVNKGHAYAADGHVLFDVQSMGDYGELSNRSLEDMLDGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK DF+LWK S EPGWESPWGRGRPGWH+ECSAM +LG DIHGGG DLIFPH Sbjct: 175 KKYAGDFVLWKPSADAEPGWESPWGRGRPGWHLECSAMIEKHLGNTIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS CA E+ W+HNG++N++G KMSKS GNF T+ ELLE S+P Sbjct: 235 HENERAQSQCAHDGEQYVKYWMHNGYINIDGEKMSKSLGNFRTVRELLE-------SFPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQ----------------RLTEAEILLSKWPQTSTSKGIID 348 VIR A+L YR +DF+ + R TE EIL + P + S G Sbjct: 288 EVIRFALLSAQYRSELDFSAELLEQSKASLDSLYGALRKTEEEILPAG-PALAASPG--- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI-----EV 396 +AL +DLNT AI LH+LAR ES + + A A+++G+ E Sbjct: 344 ---FAALMDDLNTPLAISELHQLARTVHKAEPESEEAQSAKGMMLALANLMGLLQEDPET 400 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + + IE L+ ER K+++ AD IR++L++KG +LED + T Sbjct: 401 WFQGGAEQDVSWIEALIAERQQAKLDKQYARADEIREELKAKGILLEDSREG------TT 454 Query: 457 WKQ 459 WK+ Sbjct: 455 WKK 457 >gi|296534285|ref|ZP_06896763.1| cysteine--tRNA ligase [Roseomonas cervicalis ATCC 49957] gi|296265401|gb|EFH11548.1| cysteine--tRNA ligase [Roseomonas cervicalis ATCC 49957] Length = 476 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/492 (42%), Positives = 276/492 (56%), Gaps = 55/492 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +N+ R+ F +DP ++R+YVCGPTVYD AH+GNARP++VFDVL RLLR + Sbjct: 3 ELAFHNSATRQREIFTPLDPQHVRLYVCGPTVYDLAHLGNARPVVVFDVLARLLRRRFPR 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI R+++ + I+ IT++ T F +D L CL P +P Sbjct: 63 --VTYVRNITDVDDKINARSQES------GEPIAAITARTTADFHRDMAALGCLPPDEEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I QMI LI+ +I +GHAY A ++F SS P YG+ S R DE G RV Sbjct: 115 RATDNIAQMIQLIERLIANGHAYAAEGHVLFSVSSFPGYGALSGRSPDEMLAGARVEIAP 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+ DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS YLG FDIHGGG DLIFP Sbjct: 175 YKREAGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMSWRYLGTDFDIHGGGHDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA + A W+HNG L ++G KMSKS GNF+T+ ++L G +W Sbjct: 235 HHENEVAQSVCAFPGSRFARTWLHNGMLLVDGEKMSKSLGNFLTVRDIL-----GRGAWA 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE--------ILLSKWPQTSTSKGIIDPAV---L 352 RL +L THYR +D+TV+RL EA+ +L PQ ++ L Sbjct: 290 GEAFRLLLLKTHYRAALDYTVERLEEAKAELDDFYALLARDLPQPEADDALVAEMAEWAL 349 Query: 353 SALYNDLNT--------------------VSAIQALHKLARESTKNHDLLPIFNASAHIL 392 L +DLNT SA LH++ R+ + A L Sbjct: 350 EPLADDLNTPLAIARLRDLRTLENVATVGGSATTVLHRIGRDWQPDSGQAAAALRQAAAL 409 Query: 393 GIEVCK-----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + S AIE +Q RL K K ++ AD IR L ++G +LED Sbjct: 410 LGLLGGDARAWRQGGEGDSAAIEAAIQARLDARKAKNWAEADRIRADLLAQGIVLED--- 466 Query: 448 PDNGQRMTRWKQ 459 G T W++ Sbjct: 467 ---GAGGTTWRR 475 >gi|254437047|ref|ZP_05050541.1| cysteinyl-tRNA synthetase [Octadecabacter antarcticus 307] gi|198252493|gb|EDY76807.1| cysteinyl-tRNA synthetase [Octadecabacter antarcticus 307] Length = 481 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/460 (44%), Positives = 275/460 (59%), Gaps = 33/460 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT RK EF ID ++RMYVCGPTVYD AH+GNARP+IVFD L+RLLR+ YG Sbjct: 3 IKLYNTKVRKKVEFSPIDHKDVRMYVCGPTVYDRAHLGNARPVIVFDTLFRLLRHTYGAD 62 Query: 65 CVTYVRNITDIDDKIIERA---RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI A +Q + + D I+ +S+ +++D + L P+ Sbjct: 63 HVTYVRNFTDVDDKINATAFARQQAGAAGTLEDLIAERSSETIGWYLEDMAAVGALEPSA 122 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +I QMI +I+++I GHAYEA +F S YG+ S R +D+ G RV Sbjct: 123 MPRATQYIAQMITMIEDLIAKGHAYEAEGHALFRVRSYTEYGALSGRSVDDMIAGARVEV 182 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K++P DF+LWK S+ ++PGW+SPWGRGRPGWHIECSAM+ LG FDIHGGG DL Sbjct: 183 APYKEDPMDFVLWKPSSDVQPGWDSPWGRGRPGWHIECSAMALDLLGGEFDIHGGGNDLQ 242 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA AN+W+HN L +EGRKMSKS GNF T+ +LLE + Sbjct: 243 FPHHENEIAQSTCAGH--GFANVWMHNEMLQVEGRKMSKSLGNFFTVRDLLE------QG 294 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSA 354 P VIR ML THYR+P+D+T ++ AE L W T+ D +L+A Sbjct: 295 VPGEVIRFVMLSTHYRKPMDWTAAKVQFAEKTLIGWRTATMELTPTAAPDFTADKEILAA 354 Query: 355 LYNDLNT---VSAIQALHKLARESTKNHDLLPI----FNASAHILGIEVCK----EHLNK 403 L +DLNT +S + AL + N + F A+ + G+ + ++++ Sbjct: 355 LSDDLNTHLMISKLNALRPKPQMLLDNARFVGFLSDEFRAAREVHGLPSGQYSDFDNIDL 414 Query: 404 NISIAI----EKLVQERLILLKMKKFSSADYIRKQLESKG 439 N I + +K+ + R L+ K FS+ D I+ + G Sbjct: 415 NAPIHLHLLNDKITEIRATALQTKNFSALDEIKNKAAEAG 454 >gi|254429556|ref|ZP_05043263.1| cysteinyl-tRNA synthetase [Alcanivorax sp. DG881] gi|196195725|gb|EDX90684.1| cysteinyl-tRNA synthetase [Alcanivorax sp. DG881] Length = 460 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/480 (43%), Positives = 277/480 (57%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL K +F +DP I +YVCGPTVY+F HIGNARP++VFDVLYRLL+ Y Sbjct: 3 LRLQNTLTGKKDDFIPLDPDRITLYVCGPTVYNFVHIGNARPVVVFDVLYRLLQRLY--P 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKII+ A + + IS++T + T F +D L P P+ Sbjct: 61 NVVYARNITDIDDKIIKAAAEN------GEDISVLTERFTAAFAEDMASLNAKTPNIIPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI +I ++ GHAYEA+ +++F S+P+YG S RK+++ G RV + Sbjct: 115 ATDHIPEMIQMIATLVEKGHAYEADGQVLFAVESMPDYGKLSGRKLEDMLAGARVEVADY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DFILWK S+ +PGWESPWGRGRPGWHIECSAM +LG V DIHGGG DLIFPH Sbjct: 175 KRHPGDFILWKPSSDEQPGWESPWGRGRPGWHIECSAMIHKHLGDVIDIHGGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ CCA + W+HNG++N++G KMSKS GNF + +LL + Sbjct: 235 HENEIAQGCCAHGTDYV-RYWLHNGYINIDGEKMSKSLGNFRLVRDLL-------TQYHG 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-IIDPA----------VLS 353 ++R A+L +HYR P++F+ L AE L +G + P VL Sbjct: 287 EILRFALLSSHYRSPLNFSADVLDNAEKGLDTLYYALLGRGETVAPEADYQLPDNHPVLD 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEHLNKNI 405 AL +DLNT A+ ALH +A E K L +L ++ NKN+ Sbjct: 347 ALKDDLNTSEAVSALHAIAGELNKAELADKPTLKAELLAAADLLGLLTVDPTAWFQNKNV 406 Query: 406 S------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 S I+ LV ER K K F+ AD IR+QL G LED + TRW + Sbjct: 407 SEDGLSNDDIDALVAERTQAKKDKNFARADEIRQQLTDAGIQLEDTR------EGTRWSR 460 >gi|254450306|ref|ZP_05063743.1| cysteinyl-tRNA synthetase [Octadecabacter antarcticus 238] gi|198264712|gb|EDY88982.1| cysteinyl-tRNA synthetase [Octadecabacter antarcticus 238] Length = 468 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/372 (50%), Positives = 242/372 (65%), Gaps = 14/372 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT RK EF ID +N+RMYVCGPTVYD AH+GNARP+IVFD L+RLLRY YG Sbjct: 3 IKLYNTKVRKKVEFSPIDENNVRMYVCGPTVYDRAHLGNARPVIVFDTLFRLLRYTYGAD 62 Query: 65 CVTYVRNITDIDDKIIERA---RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI A +Q + + + I+ + + +++D + L PT Sbjct: 63 HVTYVRNFTDVDDKINATALARQQAGAAGTLENLIAERSDETIGWYLEDMAAVGALEPTE 122 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +I QMI +I+++I HAYEA +F S YG+ S R +D+ G RV Sbjct: 123 MPRATQYIAQMIAMIKDLIAKEHAYEAEGHALFRVRSYAEYGTLSGRSVDDMIAGARVEV 182 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K++P DF+LWK S+ +PGW+SPWG GRPGWHIECSAM+ LG FDIHGGG DL Sbjct: 183 APYKEDPMDFVLWKPSSDDQPGWDSPWGHGRPGWHIECSAMALDLLGDAFDIHGGGNDLT 242 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA AN+W+HN L +EG+KMSKS GNF T+ +LL+ + Sbjct: 243 FPHHENEIAQSTCAGH--GFANVWMHNEMLQVEGKKMSKSLGNFFTVRDLLK------QG 294 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTSKGIIDPAVLSALYND 358 P VIR ML THYR+P+++T ++ EAE L KW + S K I+ P + A+ +D Sbjct: 295 VPGQVIRFVMLSTHYRKPMNWTEKKRVEAERTLRKWFAAIRLSAPKAIVSPEFIKAVSDD 354 Query: 359 LNTVSAIQALHK 370 LN+ AI LH+ Sbjct: 355 LNSPQAIAVLHQ 366 >gi|126726937|ref|ZP_01742776.1| cysteinyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150] gi|126703895|gb|EBA02989.1| cysteinyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150] Length = 464 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/453 (45%), Positives = 264/453 (58%), Gaps = 32/453 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK+YNT RK F +D +++RMYVCGPTVYD AHIGNARP+IVFDVLYRLLR YG Sbjct: 3 EIKLYNTATRKKGVFTPLDTNDVRMYVCGPTVYDRAHIGNARPVIVFDVLYRLLREVYGI 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIP---INDAISIITSKNTQQFVKDTTRLACLAPT 120 + V Y RN TD+DDKI A + + + I T + ++ D L + P Sbjct: 63 EHVKYARNFTDVDDKINATAASRKAAGAKGTLEELIQERTDETIAWYLDDMRSLGNIDPD 122 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PRAT I QMI + +I GHAY A ++F S NYG+ S R +D+ G RV Sbjct: 123 FAPRATEFIDQMIEMNSELIGKGHAYAAEGHVLFAVDSYKNYGALSGRSVDDMIAGARVE 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K+NP DF+LWK S PGWESPWGRGRPGWHIECSAM+ G+ FDIHGGGLDL Sbjct: 183 VAPYKRNPMDFVLWKPSDAETPGWESPWGRGRPGWHIECSAMARELFGERFDIHGGGLDL 242 Query: 241 IFPHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 FPHHENE+AQS CC D E A +W+HN L +EG+KMSKS GNF ++ ELL+ Sbjct: 243 AFPHHENELAQSKACCGD--ESFAQVWMHNEMLQVEGKKMSKSLGNFFSVRELLD----- 295 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------VL 352 + + V R L THYR+P+D+T ++ EAE L KW S I+PA V+ Sbjct: 296 -QGYSGEVARFVYLSTHYRKPMDWTDKKAREAEATLRKWRALSAG---IEPASRAGASVV 351 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-----EVCKEHLNKNISI 407 +AL +DLNT AI LHKLA S K +L ASA +LG+ + + ++S Sbjct: 352 AALADDLNTPGAIAELHKLA-SSGKAAEL----KASALLLGLLQDDMGDWADVVAVDLSA 406 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 KL R + K F+ D ++K G Sbjct: 407 FEAKLSDVRDAAMVSKDFAEVDRLKKAFTDAGL 439 >gi|83592028|ref|YP_425780.1| cysteinyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] gi|109894932|sp|Q2RWK2|SYC_RHORT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83574942|gb|ABC21493.1| cysteinyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] Length = 459 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 275/468 (58%), Gaps = 43/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NT+ R F+ +DP ++R+YVCGPTVYD AHIGNARP+IVFD+L RLLR Y + Sbjct: 3 LHIHNTMTRTKEVFEPLDPGHVRLYVCGPTVYDRAHIGNARPVIVFDLLARLLRRLYPQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA I IT + T+ F +D L L P +PR Sbjct: 62 -VTYVRNITDVDDKINARASAS------GRTIGEITEETTRLFHEDMAELGALPPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI M+ +I+ +I GHAYEA ++F S+ YGS S R +D+ G RV + Sbjct: 115 ATAHIADMVAMIERLIAKGHAYEAEGHVLFSVPSMGAYGSLSGRSMDDMIAGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK S PGW+SPWGRGRPGWHIECSAMSS YLG FDIHGGGLDLIFPH Sbjct: 175 KRDPADFVLWKPSDASLPGWDSPWGRGRPGWHIECSAMSSRYLGPSFDIHGGGLDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + A W+HNG+L +EG KMSKS GNF+T+ +LL+ P Sbjct: 235 HENEIAQSVCCNGPGTFARYWMHNGYLMVEGEKMSKSLGNFVTVRDLLDQA-------PG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVLSALYN 357 +RLAML THYR+P D+T + L +A L + + S + V++AL + Sbjct: 288 EAMRLAMLGTHYRQPFDWTAEGLEQARRGLDRLYSALRRVAGIAASPAEVPEGVMAALCD 347 Query: 358 DLNTVSAIQALHKLA----RESTKNHD------------LLPIFNASAHILGIEVCKEHL 401 DLNT A+ ++ L R +T LL +F A + +C Sbjct: 348 DLNTPKALAEVYDLLGVLNRATTTEEQAKAKGALLAAGALLGLFQADPEVW---LCGAGT 404 Query: 402 NKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + +A +E L+ +R + + F+ AD IR +L G +LED N Sbjct: 405 GEEEGLAARVEDLICQRKAARQARDFARADAIRDELTQAGIVLEDGPN 452 >gi|304309880|ref|YP_003809478.1| Cysteinyl-tRNA synthetase [gamma proteobacterium HdN1] gi|301795613|emb|CBL43812.1| Cysteinyl-tRNA synthetase [gamma proteobacterium HdN1] Length = 474 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/489 (41%), Positives = 279/489 (57%), Gaps = 55/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++NTL + F I P + MYVCGPTVY++ HIGNARP++VFD LYRLL+ +Y E Sbjct: 3 IYLHNTLSGQKERFVPISPDRVTMYVCGPTVYNYVHIGNARPVVVFDTLYRLLKRHYPE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITD+DDKI + A + I ++S+ + D L L P +PR Sbjct: 62 -VRYARNITDVDDKINKAASDN------RETICELSSRYADAYRSDMQALFNLTPQFEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I MI +I +I GHAYEA ++F+ S+ P+YG S+R +D+ G RV + Sbjct: 115 ATDNIGAMIEIITTLIEKGHAYEAEGHVLFNVSTDPHYGCLSKRNLDDMIAGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNPADF+LWK S+ PGW+SPWGRGRPGWHIEC+AM + +LGK DIH GGLDL+FPH Sbjct: 175 KKNPADFVLWKPSSDDLPGWDSPWGRGRPGWHIECTAMINAHLGKTIDIHAGGLDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ CA + E+ N W+HNG+L ++G KMSKS GNF T++ELL+ WP Sbjct: 235 HENEIAQGTCAHQDERYVNYWLHNGYLTIDGEKMSKSLGNFATVHELLQ-------HWPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVL---- 352 V+R A+L HYR P+D++ LT+A L + P + P L Sbjct: 288 EVLRYALLSAHYRSPLDWSDDALTQARASLDRLYGALRGHTPSSCADTHATAPDALQHPL 347 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI------- 394 L +DL T A+ LH+LA E+ ++ D L + ++ +G+ Sbjct: 348 LDTLEQHLADDLATPQALAVLHQLAGEANRSSDTPSRTQLQAVLASAGERMGLLTQDPES 407 Query: 395 ------EVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ + AIE L+Q+R K K F+ +D IR L+++G LED + Sbjct: 408 WFKWQAPAARDATGNGLDDAAIEDLIQQRRDARKAKNFARSDEIRDLLKAQGIELEDTR- 466 Query: 448 PDNGQRMTR 456 G R TR Sbjct: 467 --EGTRWTR 473 >gi|163746511|ref|ZP_02153869.1| cysteinyl-tRNA synthetase [Oceanibulbus indolifex HEL-45] gi|161380396|gb|EDQ04807.1| cysteinyl-tRNA synthetase [Oceanibulbus indolifex HEL-45] Length = 456 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/447 (44%), Positives = 263/447 (58%), Gaps = 20/447 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT RK +F ID N++MYVCGPTVYD AH+GNARP+IVFDVLYRLLR+ YG Sbjct: 7 IKLHNTATRKKEDFTPIDADNVQMYVCGPTVYDRAHLGNARPVIVFDVLYRLLRHVYGTD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA SI IT++ TQ ++ D + L P H PR Sbjct: 67 HVTYVRNFTDVDDKINARAATSGRSI------GEITAETTQWYLDDMAAVGALEPDHMPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IPQM+ +I+ +I G+AYEA ++F YG+ S R +D+ G RV + Sbjct: 121 ATQYIPQMVAMIRGLIDEGYAYEAEGHVLFRVRKYAEYGALSGRSVDDMIAGARVEVAPY 180 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S PGW SPWG+GRPGWHIECSAM+ LG FDIHGGG+DL FPH Sbjct: 181 KEDPMDFVLWKPSDEGTPGWPSPWGQGRPGWHIECSAMAHDLLGAQFDIHGGGIDLQFPH 240 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN W+HN L +EG+KMSKS GNF T+ +LL+ G Sbjct: 241 HENEIAQSKCAGH--GFANYWLHNEMLQVEGKKMSKSLGNFFTVRDLLDQGVQG------ 292 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--PQTSTSKGIIDPAVLSALYNDLNTV 362 VIR ML THYR+P+D+T ++ EAE L KW +++ L +DLNT Sbjct: 293 EVIRFVMLSTHYRKPMDWTEKKREEAEKTLRKWYLQAAEAEAAPPSAELVALLADDLNTH 352 Query: 363 SAIQALHKL--ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 A+ H+L A ++ + + ++ + L ++S L R + Sbjct: 353 GALTECHRLSNANDTAGLRGAMTLLGLMGDLIPEWAAVQAL--DLSDIEAFLSDARATAM 410 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKN 447 + K F+ D I+ L S G ++ K+ Sbjct: 411 ETKDFAEVDRIKTALTSVGIEVQMSKD 437 >gi|77463274|ref|YP_352778.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1] gi|109894933|sp|Q3J2V7|SYC_RHOS4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77387692|gb|ABA78877.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1] Length = 499 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/398 (46%), Positives = 247/398 (62%), Gaps = 16/398 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT R+ F+ ID N+R+YVCGPTVYD AH+GN RP++VFDVL+RLLR+ YGE Sbjct: 3 EIRLTNTKSRRKEAFEPIDRKNVRLYVCGPTVYDRAHLGNGRPVVVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISII---TSKNTQQFVKDTTRLACLAPT 120 VTYVRN TD+DDKI A + ++I T + + + +D L L PT Sbjct: 63 GHVTYVRNFTDVDDKINAAALARKDAGDPRSLEALIRERTDETIRWYHEDMDALGALRPT 122 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H+PRAT I MI +I+++I GHAYE ++F S +YG+ S R +D+ G RV Sbjct: 123 HEPRATEWIGAMIAMIEDLIAKGHAYEREGHVLFRVRSYRDYGALSGRSVDDMIAGARVE 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG FDIH GG+DL Sbjct: 183 VAPFKEDPMDFVLWKPSDDELPGWDSPWGRGRPGWHIECSAMSYELLGATFDIHAGGIDL 242 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQSCCA A +W+HN L ++GRKMSKS GNF T+ +LL+ + Sbjct: 243 QFPHHENEIAQSCCAHPEGGFARVWMHNEMLLVDGRKMSKSLGNFFTVRDLLD------Q 296 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDPAVLSALYND 358 WP VIR+ L THY P+D+T ++ +A+ L W + + G + V+ L +D Sbjct: 297 GWPGEVIRMVYLGTHYGRPMDWTAEKAEQAKTTLRNWAEMVEGAAPGEVRAEVVDPLSDD 356 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 LNT A+ AL L K D + SAH+LG+++ Sbjct: 357 LNTAGALAALSDL----YKRKDAAGLLG-SAHLLGVDL 389 >gi|254514497|ref|ZP_05126558.1| cysteinyl-tRNA synthetase [gamma proteobacterium NOR5-3] gi|219676740|gb|EED33105.1| cysteinyl-tRNA synthetase [gamma proteobacterium NOR5-3] Length = 462 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/464 (44%), Positives = 279/464 (60%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT R+ F +DP + MYVCGPTVY+ AHIGNARP++VFD L+RLL+ +Y + Sbjct: 3 LQLYNTRARRKEAFDPVDPDCVTMYVCGPTVYNLAHIGNARPVVVFDTLFRLLQTHYDK- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKI+ RA QE AI +I + Q++ +DT +L L PT +P Sbjct: 62 -VVYARNITDIDDKIM-RAAQEQGV-----AIDVIAGEFAQKYREDTAQLNALPPTLEPH 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I MI L +++I HAY A ++FD +S+ +YG S R +D+ G RV + Sbjct: 115 ATDNIGPMIALTESLIERNHAYAAEGHVLFDVTSMKDYGQLSGRSLDDMLAGARVEVAGY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S+ EPGWESPWGR RPGWH+ECSAM +LG DIHGGG DLIFPH Sbjct: 175 KRHPGDFVLWKPSSADEPGWESPWGRVRPGWHLECSAMIREHLGPTIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQSCCA ++ +W+HN FL+++G KMSKS GN TI ELL + Sbjct: 235 HENELAQSCCA-FGDEFVRVWMHNAFLDMDGEKMSKSLGNVATIRELLTRYR-------G 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGI-IDPAV-------LSAL 355 V+R A+L HYR P++F+ L +AE L+ + T S +GI +D V +AL Sbjct: 287 EVLRFALLSAHYRSPLNFSEALLEQAEQTLTSFYNTLRSVQGIELDCEVSLEGEGFYAAL 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGI----------EVCKEH 400 +DLNT AI LH LAR+ K L A+ ++LGI Sbjct: 347 CDDLNTPLAISELHVLARDINKASGSDKPALKARLLAAGNLLGILQQDPLEWLQGDGASD 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + A+E L+ ER+ + ++ AD IR +L + G ILED Sbjct: 407 LQGLDAEAVEALIAERVAAKANRDYARADEIRDELTAGGIILED 450 >gi|126728611|ref|ZP_01744426.1| Cysteinyl-tRNA synthetase, class Ia [Sagittula stellata E-37] gi|126710541|gb|EBA09592.1| Cysteinyl-tRNA synthetase, class Ia [Sagittula stellata E-37] Length = 511 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/379 (49%), Positives = 235/379 (62%), Gaps = 16/379 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT R F IDP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 10 EIRLTNTRNRAKEVFVPIDPENVRMYVCGPTVYDRAHLGNARPVLVFDVLYRLLRHVYGA 69 Query: 64 KCVTYVRNITDIDDKI--IERARQEHPSI-PINDAISIITSKNTQQFVKDTTRLACLAPT 120 VTYVRN TD+DDKI AR+E + + D I T + ++KD L L P Sbjct: 70 DHVTYVRNFTDVDDKINATALARKEAGADGTLEDLIRERTEETISWYLKDMGELGALEPD 129 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PRAT +I M+ +I+ +I GHAY A ++F S YG S R +D+ G RV Sbjct: 130 RMPRATEYIAPMVAMIEGLIESGHAYAAEGHVLFRVRSYEAYGKLSGRSVDDMMAGARVE 189 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS G FDIHGGG DL Sbjct: 190 VAPYKEDPMDFVLWKPSSDELPGWDSPWGRGRPGWHIECSAMSYELFGSSFDIHGGGNDL 249 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA A +W+HN L +EGRKMSKS GNF T+ +LL+ + Sbjct: 250 MFPHHENEIAQSCCAHPEGDFAKVWMHNEMLQVEGRKMSKSLGNFFTVRDLLD------Q 303 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-------IDPAVLS 353 P VIR ML THYR+P+D+T ++ EA+ L+ W G+ D V+S Sbjct: 304 GVPGEVIRFVMLSTHYRKPMDWTAEKAREAKRKLAYWRALLKEAGVEGVDSTAADLGVVS 363 Query: 354 ALYNDLNTVSAIQALHKLA 372 L DLNT A+ L +A Sbjct: 364 DLAEDLNTKPALDKLGSIA 382 >gi|163735857|ref|ZP_02143286.1| cysteinyl-tRNA synthetase [Roseobacter litoralis Och 149] gi|161390943|gb|EDQ15283.1| cysteinyl-tRNA synthetase [Roseobacter litoralis Och 149] Length = 490 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/481 (43%), Positives = 280/481 (58%), Gaps = 57/481 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT R+ +F+ I+ ++RMYVCGPTVYD AH+GNARP+IVFDVLYRLLR+ YG Sbjct: 3 IKLYNTKTRRKEDFEPINKDDVRMYVCGPTVYDRAHLGNARPVIVFDVLYRLLRHTYGPD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT---- 120 VTYVRN TD+DDKI RA + AI IT++ TQ F+ D + L P+ Sbjct: 63 HVTYVRNFTDVDDKINARAAES------GRAIGEITAETTQWFLDDMAAVGALEPSIKDR 116 Query: 121 -HQ---PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 HQ PRAT +I QM+ +I+++I GHAY A ++F S YG+ S R ID+ G Sbjct: 117 DHQRAMPRATQYIAQMVTMIEDLIAKGHAYAAEGHVLFAVESYSKYGALSGRSIDDMIAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPW------GRGRPGWHIECSAMSSHYLGKV 230 RV +K+NP DF+LWK S PGW P GRGRPGWHIECSAM+ LG Sbjct: 177 ARVEVAPYKRNPMDFVLWKPSDDATPGWAGPVVGGKSIGRGRPGWHIECSAMAHDLLGAT 236 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGG DL+FPHHENEIAQS CA AN+W+HN L +EG+KMSKS GNF T+ + Sbjct: 237 FDIHGGGNDLMFPHHENEIAQSTCAG--HDFANVWMHNEMLQVEGKKMSKSLGNFFTVRD 294 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTS 343 LL+ + P VIR ML THYR+P+D+T ++ EAE ++L + + + Sbjct: 295 LLD------QGVPGEVIRFVMLSTHYRKPMDWTEKKRKEAEKAVSDIHLVLLRAGYSPSM 348 Query: 344 KGII------DPA--VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 ++ PA V++ L +DLNT A+QAL KL T + F ASA LG+ Sbjct: 349 VALLKKNNRWQPASEVVNFLRDDLNTHGALQALRKLNTNGTALQ--IAEFAASAEFLGLV 406 Query: 396 VCKEHLNKNISIAI-------EKLVQERLILLKM-----KKFSSADYIRKQLESKGFILE 443 ++L + + + + ++L++ K+F AD IR LE G + Sbjct: 407 FDWDNLGLRAGLGVTFVGDHPDTDMIANILLVRQEHKQRKQFEEADRIRALLEKAGVQVN 466 Query: 444 D 444 D Sbjct: 467 D 467 >gi|295687961|ref|YP_003591654.1| cysteinyl-tRNA synthetase [Caulobacter segnis ATCC 21756] gi|295429864|gb|ADG09036.1| cysteinyl-tRNA synthetase [Caulobacter segnis ATCC 21756] Length = 463 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/479 (41%), Positives = 277/479 (57%), Gaps = 42/479 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI++TL R+ +F DP + MYVCGPTVY++AHIGN RP++VFDVLYR+LR+ YGE+ Sbjct: 3 LKIHDTLAREKRDFVPADPKRVTMYVCGPTVYNYAHIGNFRPVVVFDVLYRVLRHLYGEE 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI ++A E +PI S+IT + + +D L L P +P+ Sbjct: 63 AVVYARNVTDVDDKINKKAADE--GVPI----SVITERYLAAYHEDADALGALRPDLEPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ +I ++ +G AY A ++FDT S +YG S R +DE G RV + Sbjct: 117 ATEHIDAILEMIGQLVDNGSAYAAEGHVLFDTQSFADYGQLSGRPLDEMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK S EP WESPWG GRPGWHIECSAM LGK DIH GG+DL FPH Sbjct: 177 KRHPADFVLWKPSKENEPEWESPWGAGRPGWHIECSAMIDKALGKTIDIHAGGIDLTFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA + AN W+HNGFL++ G KMSKS GN I +ELL+T P Sbjct: 237 HENEVAQSRCAHKTAVLANYWMHNGFLDMGGEKMSKSLGNVIIPHELLKTV-------PG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA-VLSALY 356 VIR A+L HYR+P+D+T + L +++ L + + + PA V++AL Sbjct: 290 EVIRWALLSAHYRQPLDWTPELLEQSKKSLDRLYGALRRAKDVPMDQAMEAPAEVIAALM 349 Query: 357 NDLNT---VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN--------- 404 +DLNT SA + L ++ D + I A +L L + Sbjct: 350 DDLNTPLATSAFFEVSSLIEKAVTAGDSVAIAANKARLLEAGALLGFLQADPDSWFEGDA 409 Query: 405 ---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + +E L+ +R+ K +++AD IR +L++ G ++ D G W+ K Sbjct: 410 SDELKAKVEDLLAQRVAARAAKDWTAADAIRAELDALGVVVMD------GPSGATWRMK 462 >gi|209542601|ref|YP_002274830.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|209530278|gb|ACI50215.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 453 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/467 (42%), Positives = 270/467 (57%), Gaps = 32/467 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++++ RK F +DP N+R+Y CGPTVYD AHIGN R M+ D+L RLLR+ Y Sbjct: 7 QLTLHDSRSRKTVPFAPLDPGNVRVYYCGPTVYDLAHIGNLRAMVTADILVRLLRHLYPR 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI RAR + I +T++ + F +D + L P +P Sbjct: 67 --VTYVRNITDVDDKINTRARAN------GETIDSLTARTIRDFHEDLDAVGILPPDIEP 118 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+HI +M+ LI +I GHAYEA ++F S P YG+ S R ++ G RV Sbjct: 119 RATHHIAEMLTLIGQLIDSGHAYEAQGHVLFAVSRFPAYGALSGRSPEDLLAGARVEVAP 178 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P PGWESPWGRGRPGWHIECSAMS YLG+ FDIHGGG DL+FP Sbjct: 179 YKRDPGDFVLWKPSAPDLPGWESPWGRGRPGWHIECSAMSHRYLGESFDIHGGGSDLLFP 238 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS C + AN W+HN L + G KMSKS GNF+T+ + L P Sbjct: 239 HHENELAQSQCCFPHGRFANHWVHNAMLLVNGEKMSKSLGNFLTVRDALSVS-------P 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPA-VLSALYND 358 A +RL +L YR ++FT+ L +A+ L+++ T + PA VL+AL +D Sbjct: 292 AEALRLLLLHAQYRSVLNFTLAGLEDAKQTLNRFYRAVGDTPPDGTVPVPAPVLAALCDD 351 Query: 359 LNTVSAIQALHKLA-RESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI-----AIEKL 412 LNT A+ +H LA R + D A+ +LG+ E IE+L Sbjct: 352 LNTPRALAEMHALADRALAGDRDAALGLRAAGQLLGLLGQTEDAWFRAGTYVHPETIERL 411 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + ER K + F+ AD IR+ L G +LED G T W++ Sbjct: 412 IVERQDARKSRDFARADAIRESLAKDGIVLED------GPSGTTWRR 452 >gi|16124715|ref|NP_419279.1| cysteinyl-tRNA synthetase [Caulobacter crescentus CB15] gi|221233429|ref|YP_002515865.1| cysteinyl-tRNA synthetase [Caulobacter crescentus NA1000] gi|24418699|sp|Q9AAY2|SYC_CAUCR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781233|sp|B8GZS3|SYC_CAUCN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13421633|gb|AAK22447.1| cysteinyl-tRNA synthetase [Caulobacter crescentus CB15] gi|220962601|gb|ACL93957.1| cysteinyl-tRNA synthetase [Caulobacter crescentus NA1000] Length = 463 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/479 (41%), Positives = 279/479 (58%), Gaps = 42/479 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI++TL R+ +F DP + MYVCGPTVY++AHIGN RP++VFDVL+R+LR+ YGE Sbjct: 3 LKIHDTLTREKRDFVPADPQRVTMYVCGPTVYNYAHIGNFRPVVVFDVLFRVLRHLYGED 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI ++A E +PI S+IT + + +D L L PT +P+ Sbjct: 63 AVVYARNVTDVDDKINQKAADE--GVPI----SVITDRYLAAYHQDADALGALRPTLEPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ +I ++ +G AY A ++FDT S +YG S R +DE G RV + Sbjct: 117 ATEHIGAILEMIGQLVENGSAYAAEGHVLFDTQSFADYGQLSGRPLDEMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK S EP WESPWG GRPGWHIECSAM LG+ DIH GG+DL FPH Sbjct: 177 KRHPADFVLWKPSKENEPEWESPWGAGRPGWHIECSAMIDKALGQTIDIHAGGIDLTFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA + AN W+HNGFL++ G KMSKS GN I +ELLET P Sbjct: 237 HENEVAQSRCAHKTSVLANYWMHNGFLDMSGEKMSKSLGNVIIPHELLETT-------PG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA-VLSALY 356 VIR A+L HYR+P+D+T + L +++ L + + + + PA V+SAL Sbjct: 290 EVIRWALLSAHYRQPLDWTPELLEQSKKSLDRLYGALRRAKDVAPDQAMEAPAEVMSALM 349 Query: 357 NDLNTVSAIQALHKLA---RESTKNHDLLPIFNASAHILGIEVCKEHLNKN--------- 404 +DLNT A A +++ ++ D + I A +L L + Sbjct: 350 DDLNTPLATSAFFEVSSAIEKAVTAGDTVAIAANKARLLEAGALLGFLQADPDAWFEGDA 409 Query: 405 ---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + +E L+ +R+ K +S+AD IR +L++ G ++ D G W+ K Sbjct: 410 SDELKAQVEDLLAKRVAARAAKDWSAADAIRGELDALGVVVMD------GPAGATWRMK 462 >gi|332558152|ref|ZP_08412474.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides WS8N] gi|332275864|gb|EGJ21179.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides WS8N] Length = 484 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 272/468 (58%), Gaps = 43/468 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT R+ F+ IDP N+R+YVCGPTVYD AH+GN RP++VFDVL+RLLR+ YGE Sbjct: 3 EIRLTNTKSRRKEAFEPIDPGNVRLYVCGPTVYDRAHLGNGRPVVVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISII---TSKNTQQFVKDTTRLACLAPT 120 + VTYVRN TD+DDKI A + ++I T + + + +D L L PT Sbjct: 63 RHVTYVRNFTDVDDKINAAALARKDAGDPRSLEALIRERTDETIRWYHEDMDALGALRPT 122 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H+PRAT I MI +I++++ GHAYE ++F S +YG+ S R +D+ G RV Sbjct: 123 HEPRATEWIGAMIAMIEDLMAKGHAYEREGHVLFRVRSYRDYGALSGRSVDDMIAGARVE 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-------VFDI 233 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAM+ L K FDI Sbjct: 183 VAPFKEDPMDFVLWKPSDDELPGWDSPWGRGRPGWHIECSAMADGLLMKDLPENKRSFDI 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+DL FPHHENEIAQS CA A +W+HN L ++GRKMSKS GNF T+ +LL+ Sbjct: 243 HAGGIDLQFPHHENEIAQSRCAHPEGGFAKVWMHNEMLLVDGRKMSKSLGNFFTVRDLLD 302 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKGIIDPA 350 + WP VIR+ L THY +P+D+T ++ +A+ L W + ++ I Sbjct: 303 ------QGWPGEVIRMVYLGTHYGKPMDWTAEKAEQAKATLEGWFNLTDGLEAEEISGER 356 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN---KNI-- 405 L L +DLNT AI ALH+LA EST A +LG+ EH+N + I Sbjct: 357 YLDELCDDLNTAGAIAALHRLASESTAGR-----LKAGMRLLGLPDA-EHVNWWRREIVT 410 Query: 406 -------------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ++ I L+Q L K++ AD +++ LE+ G Sbjct: 411 LFGTASSGSTPLYTVEIVPLLQRWQDLRLAKRYGEADALKRALENVGL 458 >gi|190570547|ref|YP_001974905.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|254781699|sp|B3CN54|SYC_WOLPP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|190356819|emb|CAQ54186.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 464 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 208/475 (43%), Positives = 281/475 (59%), Gaps = 38/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K F ID +I+MYVCGPTVYD AHIGNAR ++V+DVL+RLL++ YG+ Sbjct: 2 VKLYNTLTKKKEPFTPIDKDHIKMYVCGPTVYDTAHIGNARSIVVYDVLFRLLKFCYGK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I I+ T+ F +D + C PT++P+ Sbjct: 61 -VTYVRNITDIDDKIINAANEK------NSNIESISKYYTKTFHEDMESINCAEPTYEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I LI++++ GHAYE+N + F S P YG S +KIDE G+RV + Sbjct: 114 ATENIDNIIKLIESLLQAGHAYESNKHVYFSVESYPEYGVLSGKKIDELNYGSRVEVGEN 173 Query: 185 KKNPADFILWKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + + W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL Sbjct: 174 KKHPGDFVLWKPANETDYKLSSHWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A W+HNGFL + KMSKS N + + +LL++ G Sbjct: 234 QFPHHENEIAQSKSAFAESTFAKYWVHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG-- 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------IDPAVLSA 354 VIR A+L THYR+P+D+T ++E++ L+K+ + S I + + A Sbjct: 292 ----EVIRYALLKTHYRKPLDWTENVISESQETLNKFYRLLRSTCIEESDTEVSKDFIEA 347 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEHLNKNIS 406 L NDLN A+ LH++A E K + L F SA +GI +E +S Sbjct: 348 LKNDLNIPEAVAILHEMATEINKTSNEYEKLKLTKKFVKSARFIGILESSYQEWFASGVS 407 Query: 407 -IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE+L+ R + + K + +AD IR+QL+ G + DN T W K Sbjct: 408 HQEIERLIDLRKVAKQNKDYDTADKIREQLKQMGVTI-----SDNEDGTTTWYGK 457 >gi|326403598|ref|YP_004283680.1| cysteinyl-tRNA synthetase [Acidiphilium multivorum AIU301] gi|325050460|dbj|BAJ80798.1| cysteinyl-tRNA synthetase [Acidiphilium multivorum AIU301] Length = 449 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 270/473 (57%), Gaps = 44/473 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK++NT R+ F DP+++++YVCGPTVYD AH+GNAR ++VFD L RLLR+ + Sbjct: 3 QIKLHNTKTRRREPFAPADPAHVKLYVCGPTVYDRAHLGNARTVVVFDTLVRLLRHLFPR 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKI RA + + I IT++ T F +D L C P +P Sbjct: 63 --VTYVRNITDIDDKINARAAE------TGETIGEITARTTSWFHEDMAALYCAPPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +I LI+ +I GHAY A ++F ++ YG FS R +E G RV Sbjct: 115 RATGHIGDIIALIERLIARGHAYAAEGHVLFAVATDAEYGKFSGRSPEELLAGARVDVAT 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P PGW+SPWGRGRPGWHIECSAM LG+ DIHGGG DLIFP Sbjct: 175 YKRDPGDFVLWKPSPPDLPGWDSPWGRGRPGWHIECSAMIHATLGETIDIHGGGADLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + A +W+H G L + G+KMSKS GNF T+ ++L+ P Sbjct: 235 HHENEIAQSCCAFPGSEFARVWVHAGMLQVNGQKMSKSLGNFRTVQDVLDEA-------P 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVLSALYN 357 +R +L THYR +DF+ L EA+ L ++ + A + AL + Sbjct: 288 GEAVRFLLLKTHYRGVLDFSTAALAEAKRELDRFYRALEKHADPAPAATPPAAFIEALAD 347 Query: 358 DLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEHLNKNIS 406 DLNT AI LH LA + + L+ IFN +A + + + Sbjct: 348 DLNTPGAIAELHALADAAMQGDAASAAGLRAAGMLIGIFNHTAD----QWFRGEATDDAR 403 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I+ L+ ERL + K F+ AD IR +L + G +LED G T W++ Sbjct: 404 --IDALIAERLAARRNKDFARADAIRAELAAAGILLED------GPGGTTWRR 448 >gi|255262212|ref|ZP_05341554.1| cysteinyl-tRNA synthetase [Thalassiobium sp. R2A62] gi|255104547|gb|EET47221.1| cysteinyl-tRNA synthetase [Thalassiobium sp. R2A62] Length = 460 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 193/442 (43%), Positives = 258/442 (58%), Gaps = 18/442 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NT R +F +DP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR+ YG Sbjct: 3 IRLHNTKTRTKEDFTPLDPDNVRMYVCGPTVYDRAHLGNARPVLVFDVLYRLLRHTYGAD 62 Query: 65 CVTYVRNITDIDDKI--IERARQEHPSI-PINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI ARQE + + D I+ + + ++ D L L P H Sbjct: 63 HVTYVRNFTDVDDKINATALARQEAGAKGSLEDLIAERSDETISWYLADMGALGALEPNH 122 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +I M+ +I+ +I GHAY +F S YG+ S R +D+ G RV Sbjct: 123 APRATAYIAPMVAMIEGLIEGGHAYAKEGHALFRVRSYKEYGALSGRSVDDMIAGARVEV 182 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK ST +PGW+SPWGRGRPGWHIECSAM+ LG FDIHGGG DL Sbjct: 183 APFKEDPMDFVLWKPSTEDQPGWDSPWGRGRPGWHIECSAMAYDLLGPAFDIHGGGNDLQ 242 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CC A +W+HN L +EG+KMSKS GNF T+ +LL+ + Sbjct: 243 FPHHENEIAQSKCCG---HDFAQVWMHNEMLQVEGKKMSKSLGNFFTVRDLLD------Q 293 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--DPAVLSALYND 358 P VIR ML THYR+P+D+T ++ EAE L KW + + + AL +D Sbjct: 294 GVPGEVIRFVMLSTHYRKPMDWTDKKRAEAETTLRKWRKLTDGVALDMGQERASDALADD 353 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHL-NKNISIAIEKLVQERL 417 +N I +H LA S + L A +LG + + ++ +E R Sbjct: 354 VNVSEVIMRMHSLA--SQGDAAALKATGAMIGLLGDNIGDWVVGGADLQAYVELFNATRS 411 Query: 418 ILLKMKKFSSADYIRKQLESKG 439 + K F++ D ++ +L G Sbjct: 412 AATENKDFAAVDALKARLTEAG 433 >gi|148260406|ref|YP_001234533.1| cysteinyl-tRNA synthetase [Acidiphilium cryptum JF-5] gi|187629816|sp|A5FYD2|SYC_ACICJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146402087|gb|ABQ30614.1| cysteinyl-tRNA synthetase [Acidiphilium cryptum JF-5] Length = 449 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 270/473 (57%), Gaps = 44/473 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK++NT R+ F DP+++++YVCGPTVYD AH+GNAR ++VFD L RLLR+ + Sbjct: 3 QIKLHNTKTRRREPFAPADPAHVKLYVCGPTVYDRAHLGNARTVVVFDTLVRLLRHLFPR 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKI RA + + I IT++ T F +D L C P +P Sbjct: 63 --VTYVRNITDIDDKINARAAE------TGETIGEITARTTSWFHEDMAALYCAPPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +I LI+ +I GHAY A ++F ++ YG FS R +E G RV Sbjct: 115 RATGHIGDIIALIERLIARGHAYAAEGHVLFAVATDAEYGKFSGRSPEELLAGARVDVAT 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P PGW+SPWGRGRPGWHIECSAM LG+ DIHGGG DLIFP Sbjct: 175 YKRDPGDFVLWKPSPPDLPGWDSPWGRGRPGWHIECSAMIHATLGETIDIHGGGADLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + A +W+H G L ++G+KMSKS GNF T+ ++L P Sbjct: 235 HHENEIAQSCCAFPGSEFARVWVHAGMLQVDGQKMSKSLGNFRTVQDVLGEA-------P 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVLSALYN 357 +R +L THYR +DF+ L EA+ L ++ + A + AL + Sbjct: 288 GEAVRFLLLKTHYRGVLDFSTAALAEAKRELDRFYRALEKHADPAPAATPPAAFIEALAD 347 Query: 358 DLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEHLNKNIS 406 DLNT AI LH LA + + L+ IFN +A + + + Sbjct: 348 DLNTPGAIAELHALADAAMQGDAASAAGLRAAGMLIGIFNHTAD----QWFRGEATDDAR 403 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I+ L+ ERL + K F+ AD IR +L + G +LED G T W++ Sbjct: 404 --IDALIAERLAARRNKDFARADAIRAELAAAGILLED------GPGGTTWRR 448 >gi|258543649|ref|YP_003189082.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256634727|dbj|BAI00703.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256637783|dbj|BAI03752.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03] gi|256640837|dbj|BAI06799.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07] gi|256643892|dbj|BAI09847.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22] gi|256646947|dbj|BAI12895.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26] gi|256650000|dbj|BAI15941.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32] gi|256652990|dbj|BAI18924.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656044|dbj|BAI21971.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12] Length = 477 Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 203/464 (43%), Positives = 272/464 (58%), Gaps = 47/464 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++++ R F IDP+++++Y CGPTVYD AHIGN R M+ DVL RLLR+ Y Sbjct: 33 LSLHDSQSRATVPFTPIDPAHVKVYYCGPTVYDLAHIGNLRAMLTADVLVRLLRHVYPR- 91 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKI RAR + I +T + T++F +D + L P +PR Sbjct: 92 -VTFVRNITDVDDKITARARAN------GEDIGSLTQRTTEEFHQDLASMNVLPPDIEPR 144 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I +M +I +I +GHAYEA ++F S P+YG+ S R +E + G RV + Sbjct: 145 ATHNIGEMQAMIARLIENGHAYEAEGHVLFSVGSFPSYGALSGRNPEELEAGARVEVAPY 204 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK S +PGWESPWGRGRPGWHIECSAMS YLG FDIHGGG DL+FPH Sbjct: 205 KKAPGDFVLWKPSDADQPGWESPWGRGRPGWHIECSAMSHRYLGDSFDIHGGGSDLLFPH 264 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS C K AN W+HN L +EG KMSKS GNF+TI ++L PA Sbjct: 265 HENERAQSLCCFPHGKFANYWVHNAMLLVEGEKMSKSLGNFLTIRDVLAQA-------PA 317 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSAL 355 +RL +L HYR +++T L EA L ++ P+T +G V+ AL Sbjct: 318 EALRLLLLGAHYRSTLNYTQAGLQEARKTLDRFYRALAAGPVPETDVPEG-----VMQAL 372 Query: 356 YNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGI-----------EVCKEHLNK 403 +DLNT AI LH LA ++ + A A +LG+ + C E Sbjct: 373 ADDLNTPKAIAELHALAAQALAGDRQAAGALKAGAGMLGLLQGDPEQWFKGDACDE---- 428 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 AIE L+ ERL K + F+ AD +R QL+++G +LED K+ Sbjct: 429 --DAAIEALINERLAARKARDFAKADALRDQLQAQGIVLEDTKD 470 >gi|167648484|ref|YP_001686147.1| cysteinyl-tRNA synthetase [Caulobacter sp. K31] gi|189082061|sp|B0T101|SYC_CAUSK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167350914|gb|ABZ73649.1| cysteinyl-tRNA synthetase [Caulobacter sp. K31] Length = 462 Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 192/478 (40%), Positives = 277/478 (57%), Gaps = 41/478 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T+ R+ +F DP + MYVCGPTVY+ AHIGN RP++VFDVL+RLLR+ YGE Sbjct: 3 LKLYDTMAREKRDFVPADPGRVTMYVCGPTVYNHAHIGNFRPVVVFDVLFRLLRHVYGED 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI +A E I +IT + + +D L L P+ +P+ Sbjct: 63 AVVYARNVTDVDDKINAKATAEGVEI------KVITDRYLAAYHEDAAALLTLPPSLEPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ +I +I ++ +G AY A ++FDT + P+YG S R +D+ G RV + Sbjct: 117 ATEHMGPIIEMIGELVANGSAYAAEGHVLFDTQAFPDYGQLSGRDLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK S EP W+SPWG GRPGWHIECSAM LG+ DIHGGG+DL FPH Sbjct: 177 KRHPADFVLWKPSKENEPEWDSPWGAGRPGWHIECSAMIDKTLGQTIDIHGGGIDLAFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA AN W+HNGFL++ G KMSKS GN I +ELL+T P Sbjct: 237 HENELAQSRCAHGAPVLANYWLHNGFLDMAGEKMSKSLGNVIIPHELLKTT-------PG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----PQTSTSKGIIDPA--VLSALYN 357 IR A+L HYR+P+D+T + + +++ L + + G +P+ V++AL + Sbjct: 290 EAIRWALLSGHYRQPLDWTPELIEQSKKALDRLYGALRRAKTVEAGESEPSDEVMAALSD 349 Query: 358 DLNTVSAIQALHKLA----RESTKNHDLLPIFN-----ASAHILGIEVC------KEHLN 402 DLNT A+ +L+ R T +L N ASA +LG + + Sbjct: 350 DLNTPLAVSGFFELSSAIERAVTAGDELAITANKGRLLASAGLLGFLQADPDSWFEGDAD 409 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ +E L+ R+ K +++AD IR ++++ G ++ D G W+ K Sbjct: 410 DDLKAKVEDLLARRIAARTAKDWTAADAIRAEIDALGVVVMD------GPAGATWRMK 461 >gi|58040207|ref|YP_192171.1| cysteinyl-tRNA synthetase [Gluconobacter oxydans 621H] gi|61216109|sp|Q5FQ31|SYC_GLUOX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58002621|gb|AAW61515.1| Cysteinyl-tRNA synthetase [Gluconobacter oxydans 621H] Length = 452 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 202/468 (43%), Positives = 273/468 (58%), Gaps = 38/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R F +DP N+R+Y CGPTVYD AH+GN R M+ D+L RLLR Y Sbjct: 9 LRLHDTHLRDKRPFTPLDPENVRVYFCGPTVYDRAHLGNLRAMMCADILIRLLRTMYPR- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TD+DDKI RA++ + IS +T + TQ F +D L L P +PR Sbjct: 68 -VTYVRNVTDVDDKINARAKEN------GEDISALTERTTQAFHEDLASLFILPPDIEPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI M+ +I ++ +GHAY A ++F + P+YG S R +D+ G RV + Sbjct: 121 ATHHIDDMLEMIGRLVENGHAYVAEGHVLFAVRNFPSYGELSGRSLDDMIAGARVEVAPY 180 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S P PGW+SP+GRGRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 181 KRDPGDFVLWKPSEPDLPGWDSPYGRGRPGWHIECSAMSHRYLGESFDIHGGGDDLLFPH 240 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS C K A W+HNG L G KMSKS GNF TI E+L+ PA Sbjct: 241 HENERAQSMCCYPHGKFATHWVHNGMLLSNGEKMSKSLGNFFTIREVLDRS-------PA 293 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------AVLSALYND 358 +RL L HYR +DF+ ++L EA +L + + +G P AV+ AL +D Sbjct: 294 EPLRLLYLGAHYRSTLDFSWEKLEEARRVLDRL-YRALERGNAQPGTALPAAVMDALCDD 352 Query: 359 LNTVSAIQALHKLA-------RESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 LNT AI ALH LA +++ + ++ E + ++ + AIEK Sbjct: 353 LNTPLAIAALHPLADAAMQGDQDAASSLLAAGKLLGLFNVTPAEWFQSGVDAS---AIEK 409 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 L++ERL K + F+ AD IR QL + G LED G T W++ Sbjct: 410 LIEERLAARKSRDFARADAIRAQLAADGITLED------GPGGTTWRK 451 >gi|84515618|ref|ZP_01002980.1| cysteinyl-tRNA synthetase [Loktanella vestfoldensis SKA53] gi|84510901|gb|EAQ07356.1| cysteinyl-tRNA synthetase [Loktanella vestfoldensis SKA53] Length = 477 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 206/465 (44%), Positives = 263/465 (56%), Gaps = 37/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NT RK +F ID N+RMY+CGPTVYD AH+GNARP +VFDVL+RLLR YG K Sbjct: 4 IRLHNTKSRKREDFVPIDARNVRMYLCGPTVYDRAHLGNARPSLVFDVLFRLLRQIYGAK 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI + AI IT++ + D L L PTH+PR Sbjct: 64 HVTYVRNFTDVDDKI------NARAAAAGRAIGDITAETIGWYHADLDALGALRPTHEPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I QMI +I ++I HAYEA ++F S YG+ S R ID+ G RV + Sbjct: 118 ATQYIAQMIAMITDLIAKNHAYEAEGHVLFAVESYAEYGALSGRSIDDMIAGARVEIAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S PGW+SPWG GRPGWHIECSAM+ LG FDIHGGG DL FPH Sbjct: 178 KRNPMDFVLWKPSGDGVPGWDSPWGYGRPGWHIECSAMAHDLLGDSFDIHGGGNDLQFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA + A WIHN L +EG+KMSKS GNF TI +LL+ + P Sbjct: 238 HENEIAQSACAHPHGEFARYWIHNEMLQVEGKKMSKSLGNFFTIRDLLD------QGIPG 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------IDP 349 VIRL ML THY + +D+T R +EA++ L +W G D Sbjct: 292 EVIRLVMLGTHYGKTMDWTEARRSEADLTLRRWYGILHGHGFGPDLIRALKADGKWQADA 351 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEHL 401 L L NDLNT AI LH LA+ T D+L + A I ++ + Sbjct: 352 EFLGVLANDLNTPGAIARLHVLAKGKTPTALAGFAHGLDMLGLVRDWAAIPLLDGAEAGP 411 Query: 402 NKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++A ++ L+ R K ++ AD +R L S G + D Sbjct: 412 DVTPAVAARVDALLAARAAARAAKDWAQADDVRDILTSAGVQVTD 456 >gi|88705054|ref|ZP_01102766.1| Cysteinyl-tRNA synthetase [Congregibacter litoralis KT71] gi|88700749|gb|EAQ97856.1| Cysteinyl-tRNA synthetase [Congregibacter litoralis KT71] Length = 462 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 198/464 (42%), Positives = 281/464 (60%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT + F+ + P+ + MYVCGPTVY+ AHIGNARP++VFD L+RLL+ Y E Sbjct: 3 LQLYNTRAKTKEVFRPLSPNRVTMYVCGPTVYNLAHIGNARPVVVFDTLFRLLQTRYDE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKI+ A+++ AI +I + T ++ +DT +L L PT +P Sbjct: 62 -VVYARNITDIDDKIMLAAKEQ------GVAIDVIAKEFTDKYREDTAQLNALPPTLEPH 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I MI L + +I GHAY + ++F +S+ NYG S R +D+ G RV + Sbjct: 115 ATDNIGPMIALTEKLIEKGHAYASEGHVLFAVTSMENYGQLSGRSLDDMLAGARVEVADY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S+ EPGW+SPWGR RPGWH+ECSAM +LG DIHGGG DLIFPH Sbjct: 175 KRHPGDFVLWKPSSDDEPGWDSPWGRVRPGWHLECSAMIREHLGPTIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQSCCA ++ +W+HN FL+++G KMSKS GN TI ELL ++ G Sbjct: 235 HENELAQSCCA-FGDEFVRVWMHNAFLDMDGEKMSKSLGNVATIRELL--TRYRGE---- 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLSAL 355 V+R A+L HYR P++F+ L +AE L+ + T S I+ A SAL Sbjct: 288 -VLRFALLSAHYRSPLNFSEALLAQAEQTLTNFYNTLRSVQHIELDEDVPLEGEAFYSAL 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIE-------VCKEHLNK 403 +DLNT AI LH LAR+ K + L A+ ++LG+ + + + Sbjct: 347 CDDLNTPLAISELHALARDINKAAEDDKPQLKARLLAAGNLLGVLQHDPLEWLQGDSAST 406 Query: 404 NISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + S+ A++ L+ ER K ++ AD IR++L + G +LED Sbjct: 407 DSSLDADAVDALIAERAAAKADKNYARADGIREELTAAGIVLED 450 >gi|126735695|ref|ZP_01751440.1| cysteinyl-tRNA synthetase [Roseobacter sp. CCS2] gi|126714882|gb|EBA11748.1| cysteinyl-tRNA synthetase [Roseobacter sp. CCS2] Length = 477 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 191/387 (49%), Positives = 232/387 (59%), Gaps = 27/387 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++ NT RK +F IDP N+R+Y+CGPTVYD AHIGN RP +VFDVL+RLL+ YG Sbjct: 4 IRLNNTKTRKREDFIPIDPKNVRLYLCGPTVYDRAHIGNLRPSLVFDVLFRLLKEVYGPD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA + AI IT++ Q + D + PTH+PR Sbjct: 64 HVTYVRNFTDVDDKINARAAE------TGRAIGDITAETIQWYHDDLDAVGLQRPTHEPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI QMI +I+ +I GHAY A ++F S YG+ S R ID+ G RV + Sbjct: 118 ATDHIAQMIAMIEVLIEKGHAYAAEGHVLFAVESYDAYGALSGRSIDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S PGW SPWG GRPGWHIECSAMS LG+ FDIHGGG DL FPH Sbjct: 178 KRNPMDFVLWKPSGDGVPGWNSPWGYGRPGWHIECSAMSLELLGESFDIHGGGNDLQFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA + A W+HN L +EG+KMSKS GNF TI +LL+ + P Sbjct: 238 HENEIAQSACAHPTGEFARYWVHNEMLQVEGKKMSKSLGNFFTIRDLLD------QGVPG 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---------------DP 349 VIRL ML THY + +D+T R EAE L KW G D Sbjct: 292 EVIRLVMLGTHYGKTMDWTETRRAEAEGTLRKWYGILQGHGFGPELIAALEAEGKWQPDA 351 Query: 350 AVLSALYNDLNTVSAIQALHKLAREST 376 + L NDLNT A+ LH LA+ T Sbjct: 352 EFIGVLANDLNTSGALARLHVLAKGKT 378 >gi|291333822|gb|ADD93505.1| cysteinyl tRNA synthetase [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 458 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 194/468 (41%), Positives = 277/468 (59%), Gaps = 36/468 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+L + F +DP + MYVCGPTVY+F HIGNARP +VFD L+R+L+ Y + V Sbjct: 5 LYNSLTKAKQPFVPLDPERVTMYVCGPTVYNFVHIGNARPAVVFDTLFRVLQRLYPQ--V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y RNITDIDDKI+ A + + + IS ++++ Q + D + L CL P+ P AT Sbjct: 63 VYARNITDIDDKIMNTAAE------LGEDISQLSTRFAQAYFDDMSALNCLEPSIVPYAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HIP+MI ++Q ++ GHAY A ++F S+ +YG+ S R +++ G RV +K+ Sbjct: 117 AHIPEMISMVQRLVDKGHAYVAEGNVLFAVESMADYGALSGRSLEDMMAGARVEIASYKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 DF+LWK ST EPGW+SPWGRGRPGWH+ECSAM +LG DIH GG DLIFPHHE Sbjct: 177 YAGDFVLWKPSTDHEPGWDSPWGRGRPGWHLECSAMIEKHLGVTIDIHAGGQDLIFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQSCCA + AN W+HNGF+N++G KMSKS GNF +N+LL + +P V Sbjct: 237 NEIAQSCCAHDGQPFANYWLHNGFINIDGEKMSKSLGNFRMVNDLL-------KQYPGEV 289 Query: 307 IRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPAVLS--ALYNDLN 360 +R +L +HYR +F L A + L ++ +ID +S AL +DLN Sbjct: 290 LRYVILSSHYRSEQNFGKDLLDSAWRSLDSLYGYLRGLPETEAVIDRDSISFKALLDDLN 349 Query: 361 TVSAIQALHKLARESTKNHD-----LLPIFNASAHILGI---------EVCKEHLNKNIS 406 T AI L++LA+E D L A ++G+ + ++ ++IS Sbjct: 350 TPVAISELYRLAKEMHTASDSEKAALHSELMGLAELMGLLQQDPEQWFKQSRDGEAESIS 409 Query: 407 IA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 A IE+L+ +R K ++ AD +R+QL +G +LED + + +R Sbjct: 410 EAEIERLIAKRQQAKADKDYAGADQVREQLLEQGVVLEDSREGTSWRR 457 >gi|329897619|ref|ZP_08272161.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC3088] gi|328921107|gb|EGG28515.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC3088] Length = 457 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 201/461 (43%), Positives = 274/461 (59%), Gaps = 37/461 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL RK F+ P + MYVCGPTVY+ AHIGNARP++VFDVL+RLL+ Y + Sbjct: 3 ITLYNTLARKKERFEPRVPGEVTMYVCGPTVYNLAHIGNARPVVVFDVLFRLLQTQY--Q 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKII AR+ + I +TS+ TQ+F +D L L PT +P Sbjct: 61 TVRYARNITDIDDKIITAARER------AEPIDAVTSEFTQKFREDVAALGTLPPTLEPH 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+++ MI +++ ++ HAYEA+ ++F +S+PNYG S R +D+ G RV + Sbjct: 115 ATHNLGPMIAMVEALLAKNHAYEADGHVLFSVTSMPNYGELSGRNLDDMLAGARVEVADY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + EPGWESPWGRGRPGWH+ECSAM +LG DIHGGG DLIFPH Sbjct: 175 KRHPGDFVLWKPAADDEPGWESPWGRGRPGWHLECSAMIHEHLGLEIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSCCA W+HN +++++G KMSKS GNF TI ELL + Sbjct: 235 HENEIAQSCCA-YGGSYVRYWMHNAYIDIDGEKMSKSLGNFKTIRELLGLYR-------G 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTSKGIIDPAVL------SAL 355 V+R A+L HYR ++F+ + L ++E L+ + S + P + +AL Sbjct: 287 EVLRFALLSAHYRSSLNFSKELLDQSENALNGLYNALRKVESVDAVGPESVEQESWYAAL 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGI------EVCKEHLNKN 404 +D+NT AI LH+L E K D + A A +LGI + + ++ Sbjct: 347 CDDVNTPLAISELHQLISELNKADDSDKASIKGRILACASLLGILQSAPSDWLRGDDSEG 406 Query: 405 ISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +S AI+ LV ER+ K ++ AD IR L G +LED Sbjct: 407 LSAEAIDALVAERVEAKAAKNYARADEIRTVLTEAGVVLED 447 >gi|15603963|ref|NP_220478.1| cysteinyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E] gi|6226168|sp|Q9ZE62|SYC_RICPR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|3860654|emb|CAA14555.1| CYSTEINYL-TRNA SYNTHETASE (cysS) [Rickettsia prowazekii] gi|292571677|gb|ADE29592.1| Cysteinyl-tRNA synthetase [Rickettsia prowazekii Rp22] Length = 457 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 206/460 (44%), Positives = 277/460 (60%), Gaps = 28/460 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ +YNTL R F DP+NI+MYVCGPTVYD HIGN+R ++V+D+LYR++ +G+ Sbjct: 2 KLHLYNTLTRTKEVFNPQDPANIKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIIIKIFGK 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V YVRNITD+DDKII+RA E I IND +T K T++F + L C+ PT +P Sbjct: 62 KAVKYVRNITDVDDKIIDRA--ELLGITIND----LTDKVTREFHINMEYLGCMLPTIEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT HI MI +I+ +I HAY A+N + FD S PNY S R ++ G R+ Sbjct: 116 KATEHIDVMIEIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEAMFEGVRIENSK 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK + EP + SPWG GRPGWHIECSAMS YLG+ FDIHGGG DL Sbjct: 176 TKKNPQDFVLWKPAKKNEPENINFTSPWGLGRPGWHIECSAMSYKYLGQNFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHH NEIAQS CA A WIHNGFL + G KMSKS GNFIT+ +L++ + G Sbjct: 236 IFPHHTNEIAQSRCAFPSSTYAKYWIHNGFLTVNGSKMSKSLGNFITVRDLMDKQIQG-- 293 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLSALY 356 V+RL +L +HYR P+D+ + + +A+ L W + K + + +L+ Sbjct: 294 ----EVVRLFLLSSHYRRPLDYNDKAIDDAKKTLDYWYRAIEHINVQKVDLPSNFMRSLF 349 Query: 357 NDLNTVSAIQALHKLAR-ESTKNHDLLPIFNASAHI-----LGI--EVCKEHLNKNIS-I 407 +D+NT AI+ ++ A+ + FNASA I +G+ + E N+++ Sbjct: 350 DDMNTPLAIKIINDYAKCVFISKTEAERKFNASAIITCANFIGLMRKTQYEWFNRDVDEF 409 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +L+ +RL K K + AD IR QL K ILED N Sbjct: 410 YINELINKRLKAKKQKNWLLADKIRNQLLEKKIILEDKSN 449 >gi|89069973|ref|ZP_01157305.1| cysteinyl-tRNA synthetase [Oceanicola granulosus HTCC2516] gi|89044421|gb|EAR50552.1| cysteinyl-tRNA synthetase [Oceanicola granulosus HTCC2516] Length = 469 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 185/368 (50%), Positives = 232/368 (63%), Gaps = 14/368 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++ NT RK+ F IDP+N+RMYVCGPTVYD AH+GNAR +VFD+L+RLLR YG Sbjct: 4 IQLRNTKSRKVEPFAPIDPTNVRMYVCGPTVYDRAHLGNARSAVVFDMLFRLLRQVYGAD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA + I IT + T + D L L PTH+PR Sbjct: 64 AVTYVRNITDVDDKINARAAE------TGRTIRDITEETTGWYRDDMAALGVLRPTHEPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M +I +I G+AY A ++F S YG S R +D+ G RV + Sbjct: 118 ATEWIGAMKEMISTLIERGNAYAAEGHVLFAVESDGAYGGLSGRSVDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S +PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FPH Sbjct: 178 KRDPMDFVLWKPSADDQPGWDSPWGRGRPGWHIECSAMSYELLGETFDIHGGGNDLMFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA A W+HN L +EG+KMSKS GNF T+ +LLE + P Sbjct: 238 HENELAQSRCAHPEGGFARFWLHNEMLQVEGKKMSKSLGNFFTVRDLLE------QGVPG 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--TSKGIIDPAVLSALYNDLNTV 362 V+RL ML T Y +P+D+T ++ AE L KW + + G + VL+AL +DLNT Sbjct: 292 EVMRLVMLGTQYSKPMDWTEEKRASAEATLRKWRAMTEGVAPGEVAAPVLAALADDLNTA 351 Query: 363 SAIQALHK 370 AI LHK Sbjct: 352 GAIAELHK 359 >gi|329113816|ref|ZP_08242587.1| Cysteinyl-tRNA synthetase [Acetobacter pomorum DM001] gi|326696826|gb|EGE48496.1| Cysteinyl-tRNA synthetase [Acetobacter pomorum DM001] Length = 478 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 201/458 (43%), Positives = 272/458 (59%), Gaps = 35/458 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++++ R F IDP+++++Y CGPTVYD AHIGN R M+ DVL RLLR+ Y Sbjct: 34 LSLHDSQSRATVPFTPIDPAHVKVYYCGPTVYDLAHIGNLRAMLTADVLVRLLRHVYPR- 92 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKI RAR + I +T + T++F +D + L P +PR Sbjct: 93 -VTFVRNITDVDDKITARARAN------GEDIGSLTQRTTEEFHQDLASMNVLPPDIEPR 145 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I +M +I +I +GHAYEA ++F S P+YG+ S R ++ + G RV + Sbjct: 146 ATHNIGEMQAMIARLIKNGHAYEAEGHVLFSVGSFPSYGALSGRNPEDLEAGARVEVAPY 205 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK S +PGW+SPWGRGRPGWHIECSAMS YLG FDIHGGG DL+FPH Sbjct: 206 KKAPGDFVLWKPSDADQPGWDSPWGRGRPGWHIECSAMSHRYLGDSFDIHGGGSDLLFPH 265 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS C K AN W+HN L +EG KMSKS GNF+TI ++L PA Sbjct: 266 HENERAQSMCCFPHGKFANYWVHNAMLLVEGEKMSKSLGNFLTIRDVLAQA-------PA 318 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSAL 355 +RL +L HYR +++T L EA L ++ P+T +G VL AL Sbjct: 319 EALRLLLLGAHYRSTLNYTQAGLQEARKTLDRFYRALAAGPVPKTDVPEG-----VLQAL 373 Query: 356 YNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGI-----EVCKEHLNKNISIAI 409 +DLNT AI LH LA ++ + A A +LG+ E + + AI Sbjct: 374 ADDLNTPKAIAELHALAAQALAGDRQAAGALKAGAGMLGLLQGDPEQWFKGDASDEDAAI 433 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E L+ ERL K + F+ AD +R QL+++G +LED K+ Sbjct: 434 EALINERLAARKARDFAKADALRDQLQAQGIVLEDTKD 471 >gi|254456599|ref|ZP_05070028.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211] gi|207083601|gb|EDZ61027.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211] Length = 449 Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 190/454 (41%), Positives = 270/454 (59%), Gaps = 25/454 (5%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I + N L K +F +D NI MYVCGPTVYD HIGNARP+++FD+L+++L+ Sbjct: 1 MGNDIFLTNNLSNKKEKFVPLDEKNIGMYVCGPTVYDDPHIGNARPIVIFDILFKVLKKK 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VTYVRNITD+DDKII+ +++++ SI S +T + F +D L C P+ Sbjct: 61 FSN--VTYVRNITDVDDKIIKSSKEKNISI------SDLTQTVIKSFNEDCNYLNCENPS 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 QP+AT HI MI +I +I G AYE N + F+ +YG S +K+++ G+R+ Sbjct: 113 QQPKATEHIDLMIEMISELIKKGFAYENNQHVYFEVKKFDDYGKLSNKKLEDLIAGSRIE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +KKN DF+LWK S EP W+SPWG+GRPGWH+ECSAMS +LG FDIHGGG+DL Sbjct: 173 VSDNKKNSEDFVLWKPSLDNEPAWDSPWGKGRPGWHLECSAMSKKFLGNEFDIHGGGIDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA+ + AN W+HN F+ + KM+KS GN + I + K G+ Sbjct: 233 IFPHHENEIAQSRCANDTDVFANYWLHNAFITMSNEKMAKSQGNILKIKDF--RNKVSGQ 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-SKGIIDPAVLSALYNDL 359 V+RLA++ HY++P+D+ + L + + + KW S +D ++ LY+D+ Sbjct: 291 -----VLRLALISAHYKQPLDWNDKLLEDCQNTIDKWYNVYLPSDNDLDEEIIQPLYDDI 345 Query: 360 NTVSAIQALHKLARESTKNHDL-LPIFNASAHILGI-----EVCKEHLNKNISIA---IE 410 NT I LHKL ++ K + IFN++ + +G+ EV H I I+ IE Sbjct: 346 NTPGYIANLHKLYDKANKGDEKDKQIFNSACNFIGLLQETKEVWLNHKKDKIDISEEEIE 405 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +Q R K + AD IR L KG ++ED Sbjct: 406 NKIQLRNTARANKDYKEADNIRDYLLDKGVLIED 439 >gi|146278108|ref|YP_001168267.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025] gi|187630856|sp|A4WU98|SYC_RHOS5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145556349|gb|ABP70962.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025] Length = 486 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 197/469 (42%), Positives = 272/469 (57%), Gaps = 37/469 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++ NT R+ F IDP+N+R+YVCGPTVYD AH+GN RP++VFDVL+RLLR+ YG Sbjct: 4 IRLTNTKTRRKEAFTPIDPANVRLYVCGPTVYDRAHLGNGRPVVVFDVLFRLLRHVYGPD 63 Query: 65 CVTYVRNITDIDDKI---IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI + + + + I T + + + +D L L PTH Sbjct: 64 HVTYVRNFTDVDDKINAAAQARKAAGDPRSLEELIRARTDETIRWYHEDMDALGALRPTH 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PRAT I MI +I++++ GHAYE ++F S +YG+ S R +D+ G RV Sbjct: 124 EPRATEWIGAMIAMIEDLVARGHAYEREGHVLFRVRSYRDYGALSGRSVDDMIAGARVEV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK S PGWESPWGRGRPGWHIECSAMS LG FDIH GG+DL Sbjct: 184 APFKEDPMDFVLWKPSDDELPGWESPWGRGRPGWHIECSAMSYELLGASFDIHAGGIDLQ 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA AN+W+HN L + G+KMSKS GNF TI++L + R Sbjct: 244 FPHHENEIAQSCCAHPEGGFANVWMHNEMLLVNGKKMSKSLGNFFTIHDLRKD-----RG 298 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------LSAL 355 P VIR+ +L THY +P+D+T ++ +A+ L KW + + ++PA L+AL Sbjct: 299 IPGEVIRMVLLGTHYSKPMDWTAEKAAQAKATLWKWRKLTAD---VEPAASPDAAVLAAL 355 Query: 356 YNDLNTVSAIQALHKLA------------------RESTKNHDLLPIFNASAHILGIEVC 397 +DLNT +AI LH +A + + L P+ + ++ + Sbjct: 356 ADDLNTPAAITRLHSIAAQEDGALLKASASLLGLLEDDLRGWTLPPVTGTGSGVMEVSGS 415 Query: 398 KEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE+L+ ER K F +D IR L G I++D Sbjct: 416 ATAIVGSVQYRETIERLLDERKQARMGKDFKRSDAIRDLLVGAGVIIKD 464 >gi|126462148|ref|YP_001043262.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029] gi|187630855|sp|A3PJH4|SYC_RHOS1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126103812|gb|ABN76490.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029] Length = 486 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 205/475 (43%), Positives = 277/475 (58%), Gaps = 47/475 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT R+ F+ ID N+R+YVCGPTVYD AH+GN RP++VFDVL+RLLR+ YGE Sbjct: 3 EIRLTNTKTRRKEAFEPIDRKNVRLYVCGPTVYDRAHLGNGRPVVVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISII---TSKNTQQFVKDTTRLACLAPT 120 VTYVRN TD+DDKI A + ++I T + + + +D L L PT Sbjct: 63 SHVTYVRNFTDVDDKINAAALARKDAGDPRSLEALIRERTDETIRWYHEDMDALGALRPT 122 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H+PRAT I MI +I+++I GHAYE ++F S +YG+ S R +D+ G RV Sbjct: 123 HEPRATEWIGAMIAMIEDLIAKGHAYEREGHVLFRVRSYRDYGALSGRSVDDMIAGARVE 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG FDIH GG+DL Sbjct: 183 VAPFKEDPMDFVLWKPSDDELPGWDSPWGRGRPGWHIECSAMSYELLGATFDIHAGGIDL 242 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQSCCA A +W+HN L ++GRKMSKS GNF TI++L + R Sbjct: 243 QFPHHENEIAQSCCAHPEGGFAKVWMHNEMLLVDGRKMSKSLGNFFTIHDLRKD-----R 297 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------VLSA 354 P VIR+ +L THY +P+D+T ++ +A+ L KW + + ++PA VL+A Sbjct: 298 GIPGEVIRMVLLGTHYSKPMDWTAEKAAQAKATLWKWRKLTAD---VEPAGSPDAAVLAA 354 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI---EVCKEHLNKNISIA--- 408 L +DLNT +AI LH +A + + ASA +LG+ ++ L I+ A Sbjct: 355 LADDLNTPAAITRLHSIAAQEDGA-----LLKASASLLGLLEDDLRGWTLPPAIATASNV 409 Query: 409 -------------------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE+L+ ER K F +D IR L G I++D Sbjct: 410 IEVSGSATAIVGTVPYRKTIERLLDERKQARLGKDFKRSDAIRDLLVGAGVIIKD 464 >gi|89054449|ref|YP_509900.1| cysteinyl-tRNA synthetase [Jannaschia sp. CCS1] gi|109894905|sp|Q28QY7|SYC_JANSC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|88863998|gb|ABD54875.1| cysteinyl-tRNA synthetase [Jannaschia sp. CCS1] Length = 453 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 175/371 (47%), Positives = 238/371 (64%), Gaps = 17/371 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I + N+ RK+ Q I+P + +Y+CGPTVYD AH+GNAR +VFD L+RLLR+ YG Sbjct: 3 EIHLKNSKSRKVELLQPIEPGRVSLYLCGPTVYDRAHLGNARSAVVFDQLFRLLRHVYGA 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VT+VRN TD+DDKI RA E I+ +T++ +Q ++ DT L L P H P Sbjct: 63 ENVTFVRNFTDVDDKINARALAE------GREIADLTAETSQWYLDDTRALGVLDPNHMP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT +I +M+ I+++I G AY + +F S +YG S R +D+ G RV Sbjct: 117 RATEYIAEMVAFIEDLIAKGFAYARDGHALFRVRSFDDYGKLSGRSVDDMIAGARVEVAP 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S+ PGW+SPWGRGRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 177 YKEDPMDFVLWKPSSDDIPGWDSPWGRGRPGWHIECSAMAHALLGEQFDIHGGGADLMFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSC A ANIW+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 237 HHENEVAQSCAAGH--GFANIWMHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGVP 288 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTSKGIIDPAVLSALYNDLN 360 VIR ML THY +P+D+T ++ EAE L KW + S ++ P ++ +L +DLN Sbjct: 289 GEVIRFVMLSTHYGKPMDWTEKKRAEAEATLRKWYAALRQSVAEQEATPHLVDSLADDLN 348 Query: 361 TVSAIQALHKL 371 T AI LH + Sbjct: 349 TALAITTLHGM 359 >gi|90021548|ref|YP_527375.1| cysteinyl-tRNA synthetase [Saccharophagus degradans 2-40] gi|109894935|sp|Q21JG6|SYC_SACD2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89951148|gb|ABD81163.1| cysteinyl-tRNA synthetase [Saccharophagus degradans 2-40] Length = 459 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 198/475 (41%), Positives = 274/475 (57%), Gaps = 43/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT RK F ++P +I+MYVCGPTVY+ HIGNARP++VFDVL+R+L+ Y E Sbjct: 3 LTVYNTRTRKKEPFVPVNPQSIKMYVCGPTVYNLVHIGNARPVVVFDVLFRVLKTLYPE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKI++ A++ ++IS +T++ T+ +++D L L P+ P+ Sbjct: 62 -VVYARNITDIDDKIMKAAKEN------GESISALTARFTEAYIEDMAALHNLPPSIAPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI MI ++ ++ GHAYEA+ ++FD S+ NYG S R +++ G RV + Sbjct: 115 ATAHIEPMIAMVAALVEKGHAYEADGHVLFDVQSMKNYGKLSNRALEDMLDGARVEVADY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ DF+LWK S EPGW SPWGRGRPGWH+ECSAM +LG DIHGGG DLIFPH Sbjct: 175 KRYAGDFVLWKPSADDEPGWASPWGRGRPGWHLECSAMIETHLGNTIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA E+ W+HNG++N++G KMSKS GNF T+ +LL+ ++ G + Sbjct: 235 HENELAQSECAHGGEEYVRYWMHNGYVNIDGEKMSKSLGNFRTVRDLLQ--QYHGET--- 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI-------LLSKWPQTSTSK-GIIDPAVLSALY 356 IR A+L YR +DF+V L +++ L P TST + D A AL Sbjct: 290 --IRFALLSAQYRSELDFSVSLLDQSKAGLDTLYGALKNAPATSTDAVDLSDNAGYLALL 347 Query: 357 NDLNTVSAIQALHKLARESTKNHD-----------------LLPIFNASAHILGIEVCKE 399 +DLNT I LH+LA+ KN L A Sbjct: 348 DDLNTPQVIAELHRLAKIVNKNEGQEAAIAAAQLQALGGLLGLLQQEPEAWFKATTSGSS 407 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 L+ IE+L+ ER K ++ AD IRK+L KG LED + + +R+ Sbjct: 408 ELSAE---DIEQLIVERKDAKLAKNYARADEIRKELTEKGIALEDSASGTSWKRI 459 >gi|73666934|ref|YP_302950.1| cysteinyl-tRNA synthetase [Ehrlichia canis str. Jake] gi|109894899|sp|Q3YSF3|SYC_EHRCJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72394075|gb|AAZ68352.1| cysteinyl-tRNA synthetase [Ehrlichia canis str. Jake] Length = 459 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 210/480 (43%), Positives = 277/480 (57%), Gaps = 49/480 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL F ++ NI++YVCGPTVY+F HIGNAR ++++DVL+RLL+ Y V Sbjct: 3 IYNTLTGIKEPFIPLNVDNIKVYVCGPTVYNFVHIGNARSIVIYDVLFRLLKLLY--PSV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII A+ +I +TS + F +D L CL PT++P+AT Sbjct: 61 TYVRNITDIDDKIINVAQSNGQNI------CEVTSVYIKAFHEDMKMLNCLEPTYEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++I MI LIQ +I HGHAY N + F+ S P+YG S+R I E G+RV + KK Sbjct: 115 DNINVMINLIQKLIDHGHAYVDNATVFFNVESYPSYGQLSKRNIKELIYGSRVDIELGKK 174 Query: 187 NPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS YL + FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATEVDNKLMSCWPSPWGLGRPGWHIECSAMSYCYLSENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA A WIHNGFL + G KMSKS GN +T+ +LLE+ G Sbjct: 235 PHHENEIAQSCCAFPGSYYAKYWIHNGFLTVNGEKMSKSLGNVLTVRQLLESGVKG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLS 353 +IR +L THYR+P+D+ L A+ L++ +S + + V+ Sbjct: 291 --ELIRYVLLNTHYRKPLDWFNMTLVSAQESLNRMYTALSSVNVDLSLDDDVELSSDVVD 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLL------PIFNASAHILGIEVCKEH------- 400 L +D+NT AI LH++ E K D++ +A+ LGI +H Sbjct: 349 CLKDDINTPKAISVLHEMVTEINKTSDVMKKTSLAKTLIKTANFLGI---LQHSWQDWFR 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +N+N I+KL+ ER I F AD IR+ L SKG +L DN T W +K Sbjct: 406 VNEN-DQEIDKLIDERRIARANNDFKKADDIRQLLLSKGIVLS-----DNKDGTTHWYKK 459 >gi|325926478|ref|ZP_08187798.1| cysteinyl-tRNA synthetase [Xanthomonas perforans 91-118] gi|325543127|gb|EGD14570.1| cysteinyl-tRNA synthetase [Xanthomonas perforans 91-118] Length = 476 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 200/496 (40%), Positives = 271/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVAPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATTHIPQIVAMIEQLIATGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWPSPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------DPAVL-- 352 P +R A+L HYR+P+D++ + +A+ L + T + DPAV Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALEAESGSDPAVSMT 345 Query: 353 ------SALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEHL---- 401 SAL +DLNT A+ + +A ++ DL+ ASA ++ + + L Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSDLMQSGQASARMIELHAARAKLLGAG 405 Query: 402 ------------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFSRGTDAGDDARITALVEERSAAKKAKDFARADAIRKQLAEEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|57239053|ref|YP_180189.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58578996|ref|YP_197208.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|81819263|sp|Q5HBK5|SYC_EHRRW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57161132|emb|CAH58045.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58417622|emb|CAI26826.1| Cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] Length = 457 Score = 358 bits (920), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 200/461 (43%), Positives = 276/461 (59%), Gaps = 34/461 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R F +D +N+++YVCGPTVYDFAHIGN+R ++++D+L+RLL Y + V Sbjct: 3 IYNTLTRSKELFVPLDVNNVKIYVCGPTVYDFAHIGNSRSIVIYDILFRLLNVLYPK--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY+RNITDIDDKII A+ N I +T++ + F +D RL CL PT++PRAT Sbjct: 61 TYIRNITDIDDKIINVAQNN------NQNIYDVTARYIKAFNEDMGRLNCLKPTYEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I M+ LI+ +I +GHAY +N + FD S P YG S R I E G+R+ + KK Sbjct: 115 ENIDVMLALIEKLINYGHAYICDNTVFFDIESYPAYGKLSGRNIMELIYGSRIDIEVGKK 174 Query: 187 NPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS +YLG+ FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATDIDNKLMSCWPSPWGVGRPGWHIECSAMSYNYLGENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQSCCA A WIHNGFL + KMSKS GNF+T+ +LL++ G Sbjct: 235 PHHENELAQSCCAFPNSYYAKYWIHNGFLTVNHEKMSKSLGNFLTVRQLLDSGIRG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGIIDPA-----VLSA 354 VIR L THYR+P+D+ ++ A+ L++ + + ++D ++S Sbjct: 291 --EVIRYIFLSTHYRKPLDWNDNVVSNAQESLNRIYMALNVTDERLLLDDVEVSDEIISC 348 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL------LPIFNASAHILGI--EVCKEHLNKNIS 406 L +D+NT AI LH++ K D+ + + SA+ LGI +E + Sbjct: 349 LKDDMNTPKAIAVLHEMVTRINKASDIDKKVYFIKVLIKSANFLGILYHSWQEWFKVDND 408 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +L+ ER + F AD IR+ L KG +L D K+ Sbjct: 409 QDIIQLIHERKMAKTNGDFRKADRIRQILLDKGIVLSDNKD 449 >gi|254480424|ref|ZP_05093671.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] gi|214039007|gb|EEB79667.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] Length = 458 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 201/477 (42%), Positives = 279/477 (58%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ EF+ + + MYVCGPTVY+ AHIGNARP++VFD L+RLL+ YG Sbjct: 3 LKIYNTMSGAKEEFEPLVADTVTMYVCGPTVYNLAHIGNARPVVVFDTLFRLLQTQYG-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKII A++ SI +T + T ++ +D +L L P+ +P Sbjct: 61 SVTYARNITDVDDKIIAAAKEGDRSI------ESVTDEYTAKYREDMAQLNALPPSLEPH 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I MI L +I GHAYE+ ++F S+ +YG S R ID+ G RV + Sbjct: 115 ATHNIDAMIELTSTLIEKGHAYESQGHVLFAVESMEDYGKLSNRSIDDMLAGARVQVADY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + +PGW+SPWGRGRPGWH+ECSAM +LG+ DIHGGG DLIFPH Sbjct: 175 KRHPGDFVLWKPADITDPGWDSPWGRGRPGWHLECSAMIRAHLGETIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA + W+HN +L+++G KMSKS GNF T+ +LL+ S+ Sbjct: 235 HENEIAQSRCAHGGDYV-KYWMHNAYLDIDGEKMSKSLGNFRTVRDLLQ-------SYRG 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSAL 355 V+R A+L HYR P++F+V+ L +A L + T + D AL Sbjct: 287 EVLRFALLSAHYRSPLNFSVELLEQARSNLDGFYGTLREVADMEIDVDVPLADEPFYQAL 346 Query: 356 YNDLNTVSAIQALHKLARESTKNH-----DLLPIFNASAHILGI--EVCKEHLN------ 402 +DLNT AI LH LA++ K L A+ ++LGI + +E L Sbjct: 347 NDDLNTPLAIAELHALAKQLNKAAAEDKPQLKARIIAAGNLLGILGQDPEEWLQGDAAAD 406 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + AIE L+QER+ + F+ AD IR L ++G +LED + T+WK+ Sbjct: 407 AISAEAIETLIQERVDAKANRNFARADEIRDSLLAEGVVLEDSREG------TQWKR 457 >gi|294624692|ref|ZP_06703360.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601000|gb|EFF45069.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 476 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 200/496 (40%), Positives = 274/496 (55%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKG-------I 346 P +R A+L HYR+P+D++ + +A+ L + T T G Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALETESGGDVAISKT 345 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEH-LNKN 404 I V SAL +DLNT A+ + +A ++ +L+ ASA + ++ + L Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSELMHSGQASARMAQLQAARAKLLGAG 405 Query: 405 ISIA---------------------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 +++ I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 VALGLLQQDPAAWFSRGTDVGDDARITALVEERSAAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|58617054|ref|YP_196253.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] gi|81311364|sp|Q5FHI9|SYC_EHRRG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58416666|emb|CAI27779.1| Cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] Length = 457 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 200/461 (43%), Positives = 276/461 (59%), Gaps = 34/461 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R F +D +N+++YVCGPTVYDFAHIGN+R ++++D+L+RLL Y + V Sbjct: 3 IYNTLTRSKELFVPLDVNNVKIYVCGPTVYDFAHIGNSRSIVIYDILFRLLNVLYPK--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY+RNITDIDDKII A+ N I +T++ + F +D RL CL PT++PRAT Sbjct: 61 TYIRNITDIDDKIINVAQNN------NQNIYDVTARYIKAFNEDMGRLNCLKPTYEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I M+ LI+ +I +GHAY +N + FD S P YG S R I E G+R+ + KK Sbjct: 115 ENIDVMLALIEKLINYGHAYIRDNTVFFDIQSYPAYGKLSGRNIMELIYGSRIDIEVGKK 174 Query: 187 NPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS +YLG+ FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATDIDSKLMSCWPSPWGVGRPGWHIECSAMSYNYLGENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQSCCA A WIHNGFL + KMSKS GNF+T+ +LL++ G Sbjct: 235 PHHENELAQSCCAFPNSYYAKYWIHNGFLTVNHEKMSKSLGNFLTVRQLLDSGIRG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGIIDPA-----VLSA 354 VIR L THYR+P+D+ ++ A+ L++ + + ++D ++S Sbjct: 291 --EVIRYIFLSTHYRKPLDWNDNVVSSAQESLNRIYMALNVTDERLLLDDVEVSDEIISC 348 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL------LPIFNASAHILGI--EVCKEHLNKNIS 406 L +D+NT AI LH++ K D+ + + SA+ LGI +E + Sbjct: 349 LKDDMNTPKAIAVLHEMVTRINKASDIDKKVYFIKVLIKSANFLGILHHSWQEWFKVDND 408 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +L+ ER + F AD IR+ L KG +L D K+ Sbjct: 409 QDIIQLIHERKMAKTNGDFIKADRIRQILLDKGIVLSDNKD 449 >gi|91763128|ref|ZP_01265092.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002] gi|91717541|gb|EAS84192.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002] Length = 451 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 189/452 (41%), Positives = 272/452 (60%), Gaps = 25/452 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I + N L+ K +F I+ NI MYVCGPTVYD HIGNARP+++FD+L+++L+ YG Sbjct: 3 IFLTNNLKNKKEKFVPINKENIGMYVCGPTVYDNPHIGNARPLVIFDILFKVLKSKYGHD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y+RNITD+DDKII+ A++++ SI S +T+ + F D L PT QP+ Sbjct: 63 KINYIRNITDVDDKIIKSAKEKNLSI------SELTNNVIKDFNDDCNYLNLDNPTQQPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI MI +I +I AYEANN + F+ S +YG S +K+++ G+RV + Sbjct: 117 ATDHIDLMIKMISTLIEKDFAYEANNHVYFEVSKFDDYGKLSNKKLEDLIAGSRVEVSDN 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK DF+LWK S EP W+S WG+GRPGWH+ECSAMS YLG VFDIHGGG+DLIFPH Sbjct: 177 KKKSEDFVLWKPSKDDEPSWDSSWGKGRPGWHLECSAMSKKYLGNVFDIHGGGIDLIFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA+ + AN WIHN F+ + KM+KS GN + I + + Sbjct: 237 HENEIAQSRCANDSKVFANYWIHNAFITMSNEKMAKSTGNILKIKDFKDNV-------DG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDPAVLSALYNDLNT 361 V++LA++ HY++P+D+ + L + + + KW + K ++D +LS LY+DLNT Sbjct: 290 QVLKLALMSAHYKQPLDWNEKLLEDCKNTIDKWYEVYLPPKDKIVLDEDILSPLYDDLNT 349 Query: 362 VSAIQALHKLARESTK-NHDLLPIFNASAHILGI-----EVCKEHLNKNISI---AIEKL 412 I LH+L ++ K ++ +F + + +GI E E K SI I ++ Sbjct: 350 PGYIAKLHQLYDKALKGGNEEKSLFVLACNFIGILNKTKEEWIEFKKKKSSINEDDILEM 409 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILED 444 + R + K + AD IR +L KG ++ED Sbjct: 410 ISLRNKAREDKNYKEADIIRDKLLDKGVLIED 441 >gi|294665915|ref|ZP_06731181.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604319|gb|EFF47704.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 476 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 200/496 (40%), Positives = 273/496 (55%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I +I +GHAY A ++F SS YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIDQLIANGHAYAAEGHVLFSVSSFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKG-------I 346 P +R A+L HYR+P+D++ + +A+ L + T T G Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALETESGGDVAISKT 345 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEH-LNKN 404 I V SAL +DLNT A+ + +A ++ +L+ ASA + ++ + L Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSELMHSGQASARMAQLQAARAKLLGAG 405 Query: 405 ISIA---------------------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 +++ I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 VALGLLQQDPAAWFSRGTDVGDDARITALVEERSAAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|90415956|ref|ZP_01223889.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2207] gi|90332330|gb|EAS47527.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2207] Length = 450 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 197/463 (42%), Positives = 265/463 (57%), Gaps = 42/463 (9%) Query: 18 FQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77 FQ ID + MYVCGPTVY+ HIGNARP +VFD LYRLL Y V Y RNITDIDD Sbjct: 8 FQPIDSQRVTMYVCGPTVYNRVHIGNARPAVVFDTLYRLLTSLY--PNVQYARNITDIDD 65 Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KI++ A + + + IS+++++ + + D L L PT P AT HIP+M +I Sbjct: 66 KIMKTAAE------LGEDISVLSTRYAEAYFDDMQALNNLPPTIVPYATQHIPEMTDMIS 119 Query: 138 NIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS 197 ++ HAYE+ ++F S+ +YG S R +D+ G RV +KK DFILWK S Sbjct: 120 RLVAKEHAYESEGHVLFAVQSMADYGKLSGRSLDDMLAGARVEVASYKKYAGDFILWKPS 179 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EPGW+SPWGRGRPGWH+ECSAM +LG+ DIHGGG DLIFPHHENEIAQSCCA Sbjct: 180 ADDEPGWDSPWGRGRPGWHLECSAMIEKHLGESIDIHGGGQDLIFPHHENEIAQSCCAHD 239 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + AN+W+HNGF+N+EG KMSKS GNF +N+LLE +P V+R +L HYR Sbjct: 240 GKPVANVWMHNGFINIEGEKMSKSLGNFRMVNDLLE-------QYPGEVLRYVILSAHYR 292 Query: 318 EPIDFTVQRLTEA--------EILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALH 369 +F L A L ++ + + I D +AL +DLNT AI LH Sbjct: 293 SEQNFGKDLLDSAWRSLDAIYGFLRTQVGIEAAAVDIADTHAYAALLDDLNTPVAISELH 352 Query: 370 KLARE-STKNHDLLPIFN----ASAHILGI-----EVCKEHLNKNISIA---IEKLVQER 416 K ARE + + D L A A ++G+ E H I+ IE L+ +R Sbjct: 353 KFAREMNAADGDALAEAKGRLLAVAGLMGLLQQDPEQWFTHSRGGSDISAEEIEVLIAKR 412 Query: 417 LILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 K ++ AD +R++L++ G +LED + T+W++ Sbjct: 413 NQAKADKDYAGADGVREELKAMGVVLEDSREG------TKWRR 449 >gi|319790489|ref|YP_004152122.1| cysteinyl-tRNA synthetase [Thermovibrio ammonificans HB-1] gi|317114991|gb|ADU97481.1| cysteinyl-tRNA synthetase [Thermovibrio ammonificans HB-1] Length = 472 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 208/478 (43%), Positives = 273/478 (57%), Gaps = 55/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + EF+ ++ ++MYVCGPTVYD AHIG+AR +VFDV+ R L Y G + Sbjct: 2 IKVTNTLTERKEEFKPLEGKTVKMYVCGPTVYDHAHIGHARSAVVFDVIRRWLEYR-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRN TD+DDKII+R+++E IP + ++ K + +D L PT++P+ Sbjct: 61 VI-FVRNYTDVDDKIIKRSKEE--GIPWYE----VSKKYIASYEEDMEALNVKEPTYKPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I +I +I GHAYEA+ ++ F S P YG S+RK +E G RV Sbjct: 114 VTEHIREIIEMIDGLIQKGHAYEADGDVYFSVESFPEYGKLSKRKTEELLAGARVEPGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+S EPGWESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 174 KKNPLDFALWKKSKEGEPGWESPWGVGRPGWHIECSAMSMKYLGETIDIHGGGFDLIFPH 233 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A WIHNGF+ + KMSKS GNF TI E+L + + Sbjct: 234 HENEIAQSESY--TGKTFARYWIHNGFVMVNREKMSKSLGNFFTIKEIL-------KQFS 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL-------------SKWPQTSTSKGIIDPA 350 +RL +L THYR PIDFTV+RL EAE L K P+ ID Sbjct: 285 PDTLRLFLLSTHYRSPIDFTVERLKEAERALKRLTTFIESVKAVEKLPEEGEKGEPIDVE 344 Query: 351 VL-----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI----------FNAS 388 +A+ +D NT A+ AL++L + ++ K + P F + Sbjct: 345 SARREFEAAMDDDFNTAKALGALYELVKRANTLKDKALKRQKITPSERESLVDAARFTEN 404 Query: 389 A-HILGIEVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A LG ++ +E + A IE L+Q R L K K+F AD IR +L+ G LED Sbjct: 405 ALKTLGFKLEREQSEGGLEEALIELLIQVRGELRKKKEFQLADLIRDRLKELGITLED 462 >gi|289671266|ref|ZP_06492341.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 476 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 200/496 (40%), Positives = 274/496 (55%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++NTL R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNTLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLSALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + N IS IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ------NVPISTITDRFAAIYRQDMAALGVMPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T +D Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALDADGGSDVGSSKT 345 Query: 349 -PA-VLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNASAHILGIE 395 PA V +AL +DLNT A+ + +A E+ + L + A +LG Sbjct: 346 IPAEVEAALDDDLNTPLALSVIASIAAEARALRNELVHGGEPLGRMNELHAVRAKLLGAG 405 Query: 396 VCKEHLNKNIS------------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + L ++ + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFARGTDAGDDARITALVEERNAAKKAKDFARADAIRKQLADQGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|78048109|ref|YP_364284.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|109894961|sp|Q3BSH9|SYC_XANC5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78036539|emb|CAJ24230.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 476 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 199/496 (40%), Positives = 272/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIATGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWPSPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALEAESGSDLAVSMT 345 Query: 349 -PA-VLSALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEHL---- 401 PA V SAL +DLNT A+ + +A ++ DL+ ASA ++ + + L Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSDLMQSGQASARMIELHAARAKLLGAG 405 Query: 402 ------------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFSRGTDAGDDARITALVEERSAAKKAKDFARADAIRKQLAEEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|289207861|ref|YP_003459927.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] gi|288943492|gb|ADC71191.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] Length = 474 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 191/483 (39%), Positives = 283/483 (58%), Gaps = 44/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ ++NTL + F+ DP + +YVCGPTVY+ H+GN RP++VFDVL+R+LR YG Sbjct: 7 RELILHNTLGGRDEPFRPQDPERVTLYVCGPTVYNRVHVGNGRPVVVFDVLFRVLRELYG 66 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI + A + + I+ +T + T+ F +D L L PT + Sbjct: 67 PEHVIYARNITDVDDKINKAAAEN------GEPIAALTERYTRAFHEDIAELGTLPPTLE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT+HI MI LI+ +I GHAY A ++FD +S P+YG+ S R +++ + G RV Sbjct: 121 PRATDHIQPMIELIERLIERGHAYPAEGHVLFDVTSYPDYGALSGRTLEDMQAGARVEVA 180 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK + EPGW+S WG GRPGWH+EC+AM +LG + DIHGGG DL+F Sbjct: 181 RYKRHPGDFVLWKPAAEGEPGWDSLWGYGRPGWHLECTAMIRSHLGAMIDIHGGGHDLVF 240 Query: 243 PHHENEIAQSC----CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 PHHENEIAQ C C + A W+HNG + ++G KMSKS GNF +++LL+ Sbjct: 241 PHHENEIAQGCAAEGCTEHGTYYARYWVHNGHVTIDGEKMSKSLGNFQLLHDLLQ----- 295 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 +WP V+R+A+L HYR P++F+ LT++ L+ + ++PA Sbjct: 296 --AWPGEVLRMALLSRHYRAPLNFSEDTLTQSRNALNGLYRVLRDHADVEPAPVNAADTP 353 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIE-------VC 397 V +AL +DLNT I ALH+LA D L A A +LG+ Sbjct: 354 VFTALLDDLNTPGGITALHRLADALAAAGDPAERARLKGELTAGAGLLGLLQQDPTAWFQ 413 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + ++ +E+ + R K + F++AD IR +L ++G LED P+ TRW Sbjct: 414 GDGEDPGLAAWVEERIAARQAARKNRDFATADAIRDELTARGIELED--TPEG----TRW 467 Query: 458 KQK 460 ++ Sbjct: 468 QRS 470 >gi|289665721|ref|ZP_06487302.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 476 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 200/496 (40%), Positives = 274/496 (55%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++NTL R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNTLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLSALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + N IS IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ------NVPISTITDRFAAIYRQDMAALGVMPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T +D Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALDADGGSDVGSSKT 345 Query: 349 -PA-VLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNASAHILGIE 395 PA V +AL +DLNT A+ + +A E+ + L + A +LG Sbjct: 346 IPAEVEAALDDDLNTPLALSVIASIAAEARALRNELVHGGEPLGRMNELHAVRAKLLGAG 405 Query: 396 VCKEHLNKNIS------------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + L ++ + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFSRGTDAGDDARITALVEERNAAKKAKDFARADAIRKQLADQGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|71083835|ref|YP_266555.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062] gi|109894918|sp|Q4FLI7|SYC_PELUB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71062948|gb|AAZ21951.1| cysteinyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062] Length = 453 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 188/456 (41%), Positives = 273/456 (59%), Gaps = 25/456 (5%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K I + N L K +F I+ NI MYVCGPTVYD HIGNARP+++FD+L+++L+ Sbjct: 1 MNKDIFLTNNLNNKKEKFVPINKENIGMYVCGPTVYDNPHIGNARPLVIFDILFKVLKSK 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y+RNITD+DDKII+ A++++ SI S +T+ + F D L P+ Sbjct: 61 YGHDKINYIRNITDVDDKIIKSAKEKNLSI------SELTNNVIKDFNDDCNYLNLDNPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 QP+AT+HI MI +I +I AY N+ + F+ S +YG S +K+++ G+RV Sbjct: 115 QQPKATDHIDLMIKMISTLIEKDFAYVVNDHVYFEVSKFDDYGKLSNKKLEDLIAGSRVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +KK DF+LWK S EP W+SPWG+GRPGWH+ECSAMS YLG VFDIHGGG+DL Sbjct: 175 VSDNKKKSEDFVLWKPSKDDEPSWDSPWGKGRPGWHLECSAMSKKYLGNVFDIHGGGIDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA+ + AN WIHN F+ + KM+KS GN + I + + Sbjct: 235 IFPHHENEIAQSRCANDSKVFANYWIHNAFITMSNEKMAKSTGNILKIKDFKD------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDPAVLSALYN 357 + V++LA++ HY++P+D+ + L + + + KW + K ++D +LS LY+ Sbjct: 288 NVDGQVLKLALMSAHYKQPLDWNEKLLEDCKNTIDKWYEVYLPPKDKIVLDEDILSPLYD 347 Query: 358 DLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGI-----EVCKEHLNKNISI---A 408 DLNT I LH+L ++ K ++ +F + + +GI E E K SI Sbjct: 348 DLNTPGYIAKLHQLYDKALKGGNEEKSLFVLACNFIGILNKTKEEWIEFKKKKSSINEDD 407 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I +++ R + K + AD IR +L KG ++ED Sbjct: 408 ILEMISLRNKAREDKNYKEADIIRNKLLDKGVLIED 443 >gi|114797963|ref|YP_761876.1| cysteinyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444] gi|123027646|sp|Q0BXB7|SYC_HYPNA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114738137|gb|ABI76262.1| cysteinyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444] Length = 461 Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 193/465 (41%), Positives = 269/465 (57%), Gaps = 41/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T RK F+ D + +YVCGPTVY++AHIGNARP +VFDVL R+L YGE Sbjct: 3 LRIYDTAARKKRVFEPQDAKRVTLYVCGPTVYNYAHIGNARPPVVFDVLRRVLMARYGED 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y RNITDI+DKII S+ + IS IT K + D L +APT +P Sbjct: 63 AIVYARNITDIEDKIIA------ASVASGEPISAITQKYAAIYNADVEALNVIAPTIEPW 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+MI +I+ +I +AY + + F S+P+YG S RK ++ + G RV Sbjct: 117 ATGHVPEMIEIIEKLIRKKYAYVGDTGVWFSVPSMPDYGRLSGRKPEDNEAGARVAVDED 176 Query: 185 KKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P+DF LWK + P EP W+SPWGRGRPGWHIECSAM++ +LG+ DIHGGG+DL Sbjct: 177 KRDPSDFALWKFAKPGEPEDAIWDSPWGRGRPGWHIECSAMAAKHLGRTIDIHGGGVDLT 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E+ A W+HNGFL++ G KMSKS GN +T+++LL ++ Sbjct: 237 FPHHENEIAQSECA-HGEELARYWMHNGFLDMGGEKMSKSLGNVVTVHDLL-------KA 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKGIIDPAVLS 353 WP V+R A+L HYR +D+T L +A+ L + W D VL Sbjct: 289 WPGEVLRFALLTAHYRAQLDWTEDLLKQAKTTLDRIYGALRRVWEADGGEA--RDTGVLR 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL---LPIFNASAHILGIEVC-----------KE 399 AL +DL T A+ L +LA E+ DL + + N A++L ++ Sbjct: 347 ALEDDLGTPDALAELARLASEANTAADLKDAVAMANGRANLLAAGKLLGLLTKTPKEWEQ 406 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + I+ VQ R+ K ++ AD IRK L +G + D Sbjct: 407 GADTDENSRIDAQVQARVDARVAKDWAEADRIRKALAEEGVEIMD 451 >gi|119505713|ref|ZP_01627782.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2080] gi|119458423|gb|EAW39529.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2080] Length = 458 Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 192/463 (41%), Positives = 270/463 (58%), Gaps = 39/463 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ NTL + F+ DP+ I +YVCGPTVY+ AHIGNARP++ FD+LYR+LR Y Sbjct: 3 ELRFTNTLTGQKEVFEPRDPNRITLYVCGPTVYNLAHIGNARPVVTFDMLYRVLRALY-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITDIDDKII AR+ N+ I +T + T ++ +D +L L+P +P Sbjct: 61 PTVVYARNITDIDDKIIAAARER------NEGIDAVTKEFTDKYREDMAQLNALSPDLEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT +I M LI +I GHAY A ++FD +S+P+YG+ S R +++ G RV Sbjct: 115 RATENIKPMCDLITQLIARGHAYAAEGHVLFDVTSMPSYGALSGRNLEDMLAGARVEVAD 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S EPGW+SPWG GRPGWH+ECSAM +LG DIHGGG DLIFP Sbjct: 175 YKRSPGDFVLWKPSAEDEPGWDSPWGWGRPGWHLECSAMIRAHLGDAIDIHGGGRDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQSCC W+HN +++++G KMSKS GN T+ +LL +P Sbjct: 235 HHENERAQSCCG-YGGDFVRYWLHNAYVDMDGEKMSKSLGNVRTVRDLLGL-------YP 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------DPAVLSAL 355 V+R A+L THYR P++F+ + L A++ L+ + Q + I D +AL Sbjct: 287 GEVLRFALLSTHYRSPLNFSGEVLDNAKLTLNSFYQALRNTSDICPEDVRPEDTLAFTAL 346 Query: 356 YNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS 406 +DLNT AI ALH + +T +LL + +LG + + + S Sbjct: 347 LDDLNTPKAIAALHASCKALNKADAKTAATCKGELLAMGRLMG-LLGSDPEQWFTESSSS 405 Query: 407 IA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A IE+ + RL K F++AD +R +L++ G LED Sbjct: 406 AALTPEDIEQRLAARLEARARKDFAAADAVRDELQAAGIELED 448 >gi|296115000|ref|ZP_06833644.1| cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295978462|gb|EFG85196.1| cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 452 Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 196/469 (41%), Positives = 268/469 (57%), Gaps = 35/469 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++++ RK F +DP N+R+Y CGPTVYD AHIGN R M+ DVL RLLR+ Y Sbjct: 3 RLSLHDSKSRKTVAFTPLDPENVRVYYCGPTVYDLAHIGNLRAMVTADVLVRLLRHLYPH 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI RAR+ N+ I+ +T++ F +D ++ L P +P Sbjct: 63 --VTYVRNITDVDDKINARAREN------NEPITALTARTIHDFHQDLAAVSILPPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+HI QM +I +I +GHAYEA ++F + +YG S R D+ G RV Sbjct: 115 RATHHIEQMQRMISELIDNGHAYEAEGHVLFSVADYSDYGGLSGRSADDLMAGARVDVAD 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+ P DF+LWK S PGW+SPWGRGRPGWHIECSAMS HYLG+ FDIHGGG DL+FP Sbjct: 175 YKRAPGDFVLWKPSDVDTPGWDSPWGRGRPGWHIECSAMSYHYLGESFDIHGGGSDLLFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS C + AN W+HN L ++G KMSKS GNF+T+ ++L R P Sbjct: 235 HHENERAQSMCCHPHGRFANHWVHNAMLLVDGEKMSKSLGNFLTVRDVL-------RDTP 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDP--AVLSAL 355 A +RL +L YR ++FT L +A L ++ + + G P + AL Sbjct: 288 AEALRLLLLRAQYRSVLNFTRDGLDDARQTLDRFYRALAMLNDGDAAGTTPPPDVFVRAL 347 Query: 356 YNDLNTVSAIQALHKLA-RESTKNHDLLPIFNASAHILGIEVCKEHL----NKNISIA-I 409 DLNT +AI +H +A R + A+ ++G+ + + A I Sbjct: 348 CEDLNTPAAIAEMHAMANRALAGDAQAARDLRAAGRLIGLLGSTPDTWFRGDAQLDTAKI 407 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + L+ ERL K + F+ AD IR +L +G LED G T W+ Sbjct: 408 QALIDERLAARKARDFARADAIRDELAQQGIALED------GPGGTTWR 450 >gi|330819286|ref|YP_004348148.1| cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] gi|327371281|gb|AEA62636.1| cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] Length = 476 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 198/492 (40%), Positives = 269/492 (54%), Gaps = 58/492 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I++Y+TL R+ + P MYVCGPTVY+FAHIGNARP +VFDVL RLLR+ Sbjct: 1 MSDAIRLYDTLTRRKEVLRTSRPDRATMYVCGPTVYNFAHIGNARPAVVFDVLARLLRHD 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y E + Y RN TD+DDKI A ++PI IT + + +D L LAP Sbjct: 61 YRE--LVYARNFTDVDDKI--NAAAAAAALPIG----AITERYIAAYHEDMQALGVLAPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR T HIP+++ LI+ +I GHAY A ++F S +YG S R+ ++ G RV Sbjct: 113 LEPRVTEHIPEIVALIETLIARGHAYVAQGHVLFHVPSYADYGQLSGRRTEDMIAGARVE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK STP PGW+SPWGRGRPGWH+EC+AM +LG DIHGGG DL Sbjct: 173 VAPYKRDPLDFVLWKPSTPELPGWDSPWGRGRPGWHVECTAMIGRHLGHTIDIHGGGQDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ CA W+HN F+ ++G+KMSKS GN + + ELL Sbjct: 233 IFPHHENEIAQGSCAHD-ALYCRTWVHNSFVTVDGQKMSKSLGNVLLVRELLAEA----- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPA------ 350 P IR A+L THYR P+ + +RL +A L++W G PA Sbjct: 287 --PGEAIRFALLATHYRNPLHWNARRLAQARQTLTRWYGALACVEAHDGGPAPAQAVEPD 344 Query: 351 --VLSALYNDLNTVSAIQALHKL------ARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 VL+AL +DLN AI LH+L A + + + + SA +LG+ ++H Sbjct: 345 ALVLAALRDDLNVPLAISRLHELVSQLAHATDPDEQREAAARLHTSAALLGL--LRQHAP 402 Query: 403 KNISIA----------------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ E LV ER + + F+ AD +R+QL+ G +LED Sbjct: 403 SALAALRHQSRDPRHASLTPERAEALVAERDAARQRRDFARADALRQQLDHGGVLLEDTP 462 Query: 447 NPDNGQRMTRWK 458 + TRW+ Sbjct: 463 H------GTRWR 468 >gi|42520052|ref|NP_965967.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila melanogaster] gi|99036051|ref|ZP_01315087.1| hypothetical protein Wendoof_01000057 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|59798568|sp|Q73IL1|SYC_WOLPM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|42409789|gb|AAS13901.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 457 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 202/477 (42%), Positives = 281/477 (58%), Gaps = 45/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +K F ID +++MYVCGPTVYD AHIGNAR ++V+DVL++LL++ YG+ Sbjct: 2 VRLYNTLTKKKELFTPIDKDHVKMYVCGPTVYDTAHIGNARSVVVYDVLFQLLKFCYGK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I I++ T+ F +D + C PTH+P+ Sbjct: 61 -VTYVRNITDIDDKIINAASEK------NSNIESISTYYTKAFHEDMRSINCAEPTHEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ +I LI++++ GHAYE++ + F+ S YG+ S +K DE G+RV + Sbjct: 114 ATKNVDYIIKLIEHLLQSGHAYESDKHVYFNIESYHEYGALSGKKTDELVPGSRVEVNEN 173 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + ++ W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL Sbjct: 174 KKHPGDFVLWKPANDIDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A WIHNGFL + KMSKS N + + +LL++ G Sbjct: 234 QFPHHENEIAQSKSAFAGSMFAKYWIHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG-- 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIIDPAV 351 VIR A+L THYR+P+D+T +++A+ L+K+ + S S I Sbjct: 292 ----EVIRYALLKTHYRKPLDWTENVISDAQETLNKFYRLSRGLDTINIDESNAEISKDF 347 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIEVCKEHLNKNI 405 + AL NDLN A+ LH++A + K + L F SA +G+ + K Sbjct: 348 IDALKNDLNIPEALAILHEMAAKINKMSNESEKLKLTESFVKSARFIGL--LESSYEKWF 405 Query: 406 SI-----AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++ IE+L+ R I K K + +AD IR QL+ G + DN T W Sbjct: 406 AVDVNHQEIERLIDLRKIAKKNKNYDTADKIRDQLKQMGITI-----SDNEDGTTTW 457 >gi|166712436|ref|ZP_02243643.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 476 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 199/496 (40%), Positives = 273/496 (55%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFTPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDELPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGI----- 346 P +R A+L HYR+P+D++ + +A+ L + T S G+ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALEACGSSGVEVSKT 345 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEH----- 400 I V SAL +DLNT A+ + +A E+ ++L+ +SA + + + Sbjct: 346 IPVEVESALEDDLNTPLALSVIASIASEARALRNELVHAGESSARMSELHAVRAKLLGAG 405 Query: 401 -----------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + I LVQER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFSRGTDAGDDARITALVQERSAAKKGKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|167907149|ref|ZP_02494354.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177] Length = 471 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 193/473 (40%), Positives = 261/473 (55%), Gaps = 46/473 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I ++NTL R+ Q P + MYVCGPTVY++AHIGNARP +VFDVL RLLR+ Sbjct: 1 MNLPIYLHNTLTRRKEPLQTTTPDRVTMYVCGPTVYNYAHIGNARPAVVFDVLSRLLRHD 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y + V Y RN TD+DDKI A +PI IT + + D L L+P Sbjct: 61 YPQ--VVYARNFTDVDDKI--NAAAVAAGVPIG----TITDRYIDAYHADMQALGVLSPE 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR T HIP +I LI+ ++ GHAY ++F S P YG S R+ ++ G RV Sbjct: 113 LEPRVTEHIPAIIELIETLLARGHAYVVQGHVLFHVPSYPEYGHLSGRRTEDMLAGARVE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK STP PGW+SPWGRGRPGWH+ECSAM +LG DIHGGG DL Sbjct: 173 VAPYKRDPLDFVLWKPSTPDLPGWDSPWGRGRPGWHVECSAMIGQHLGHTIDIHGGGQDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ CA W+HN F+ ++G+KMSKS GN + + +LL Sbjct: 233 IFPHHENEIAQGTCAHGT-LYCRTWVHNSFVTVDGQKMSKSLGNVLLVRDLLAQA----- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------DPAVL 352 P IRLA+L THYR P+D+ QRL+ A L+++ ++ + + DP +L Sbjct: 287 --PGEAIRLALLSTHYRRPLDWNAQRLSAARQTLTRYYESLSKVAQVAVVPQIAADPQLL 344 Query: 353 SALYNDLNTVSAIQALHKLA-------RESTKNHDLLPIFNASAHILGI-----EVCKEH 400 AL NDLN A+ LH L ++ + H + SA +LG+ + Sbjct: 345 EALRNDLNVPGALVRLHVLLTVLDDADTDAERAHAKSALLT-SAALLGLLQQPPQAALAQ 403 Query: 401 LNKNISIA---------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L I+ L+ ER + + F+ AD +R+ LE+ GF +ED Sbjct: 404 LRPAAPATAVQGLGDTRIKALLAEREQARRDRDFAKADALRETLEAAGFTIED 456 >gi|91206096|ref|YP_538451.1| cysteinyl-tRNA synthetase [Rickettsia bellii RML369-C] gi|157826471|ref|YP_001495535.1| cysteinyl-tRNA synthetase [Rickettsia bellii OSU 85-389] gi|109894934|sp|Q1RH02|SYC_RICBR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166225304|sp|A8GUK2|SYC_RICB8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91069640|gb|ABE05362.1| Cysteinyl-tRNA synthetase [Rickettsia bellii RML369-C] gi|157801775|gb|ABV78498.1| cysteinyl-tRNA synthetase [Rickettsia bellii OSU 85-389] Length = 458 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/461 (43%), Positives = 280/461 (60%), Gaps = 29/461 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I ++NTL + F+ D +N++MYVCGPTVYD HIGN+R ++V+D+LYR+L + Sbjct: 2 QIYLFNTLTQNKELFEPEDQTNVKMYVCGPTVYDNPHIGNSRSVVVYDLLYRILVDIFEA 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V YVRNITD+DDKIIERA + I IN+ +T K T++F + L CL PT +P Sbjct: 62 KSVKYVRNITDVDDKIIERA--ANLGISINE----LTDKVTKEFHTNMKYLFCLPPTIEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT HI MI +I+ +I GHAY A++ + FD PNY S RK+++ RV Sbjct: 116 KATQHIDVMIEIIEKLIKSGHAYIADDHVYFDVLLAPNYTELSNRKLEDMFESVRVENSK 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + P E ++SPWG GRPGWHIECSAMS YLGK FDIHGGG DL Sbjct: 176 TKKHPQDFVLWKPAKPDEDVHMNFKSPWGLGRPGWHIECSAMSYKYLGKNFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ K+ G Sbjct: 236 IFPHHTNEIAQSKCAFSNSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMD-KQIKGE 294 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-----IDPAVLSAL 355 ++RL +L HYR P+D+ + + +A+ L W + + I + + +L Sbjct: 295 -----IVRLFLLTAHYRRPLDYNDKAIEDAKKTLDYWYRAIQNINIQKIDTLPSDFMQSL 349 Query: 356 YNDLNTVSAIQALHKLARE-STKNHDLLPIFNAS-----AHILGI--EVCKEHLNKNISI 407 ++D+N+ AI+ ++ A+ T ++ FNAS A+ +G+ E E NK++ Sbjct: 350 FDDMNSPLAIKIINDYAKAIFTATNEEEKQFNASNLIACANFIGLMNETPHEWFNKDVDE 409 Query: 408 A-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I L+ ERL K K + AD IR +L ++ ILED N Sbjct: 410 NYINNLINERLEAKKQKNWGLADQIRNKLLNEKIILEDKPN 450 >gi|114327800|ref|YP_744957.1| cysteinyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1] gi|122327235|sp|Q0BT18|SYC_GRABC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114315974|gb|ABI62034.1| cysteinyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1] Length = 470 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 203/468 (43%), Positives = 264/468 (56%), Gaps = 36/468 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ F+ IDP ++++YVCGPTVYD AHIGNAR M+VFDVL R+LR Y V Sbjct: 22 LYNSATHGREPFRPIDPKHVKIYVCGPTVYDLAHIGNARSMVVFDVLARVLRRLYPR--V 79 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY RNITD+DDKI RAR+ SI IT++ T F D L L P +PRAT Sbjct: 80 TYARNITDVDDKINARARESGVSI------DEITARTTADFHADMASLGNLPPDIEPRAT 133 Query: 127 NHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 HI +MI LI+ +I HAYE + E ++F +S P+YGS S R DE G R+ Sbjct: 134 AHIAEMILLIEKLIAQEHAYETHGEGEGHVLFSVASDPSYGSLSNRSPDELLAGARIDPA 193 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KK+P DF+LWK S +PGW+SPWGRGRPGWHIECSAMS YLG+ FDIHGGG DLIF Sbjct: 194 PYKKDPGDFVLWKPSADDQPGWDSPWGRGRPGWHIECSAMSWRYLGEDFDIHGGGGDLIF 253 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS CA A+ W+H+ L L+G KMSKS GN +T+ +LL Sbjct: 254 PHHENECAQSRCAFPGSHFAHYWMHSAMLLLDGEKMSKSLGNVLTVRDLLGQAD------ 307 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSAL 355 IRL L THYR +DF + L EA L ++ P ++ VL AL Sbjct: 308 -GEAIRLLFLKTHYRGVLDFRYEALKEAGKELDRFYRALQAHPALPDLDETVENPVLEAL 366 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGI--EVCKEHLNKNIS-IAIEK 411 +DLNT A+ +H LA + L ++G+ + + I+ I + Sbjct: 367 RDDLNTPQALSLMHGLAYAALGGDALAAAQLKEGGMLMGLFTREAEAWFQRGINPDEIAQ 426 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +RL K + F+ AD IR +L G +LED G T W++ Sbjct: 427 RIADRLQARKDRNFAEADRIRNELAEAGILLED------GPSGTTWRR 468 >gi|58582301|ref|YP_201317.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624181|ref|YP_451553.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|81311823|sp|Q5GZD9|SYC_XANOR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894962|sp|Q2P2E8|SYC_XANOM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58426895|gb|AAW75932.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368121|dbj|BAE69279.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 476 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 199/496 (40%), Positives = 272/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFTPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDELPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGI----- 346 P +R A+L HYR+P+D++ + +A L + T S G+ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQATNTLDRLYGTLRDLAALEACGSSGVEVSKT 345 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEH----- 400 I V SAL +DLNT A+ + +A E+ ++L+ SA + + + Sbjct: 346 IPVEVESALQDDLNTPLALSVIASIASEARALRNELVHGGEPSARMSELHAVRAKLLGAG 405 Query: 401 -----------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + + I LVQER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFSRGTDADDDARITALVQERSAAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|21231689|ref|NP_637606.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768188|ref|YP_242950.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] gi|24418691|sp|Q8P8J0|SYC_XANCP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81305837|sp|Q4UVJ3|SYC_XANC8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21113388|gb|AAM41530.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573520|gb|AAY48930.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] Length = 457 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 194/477 (40%), Positives = 270/477 (56%), Gaps = 39/477 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I HAY A ++F +S +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIASAHAYAAEGHVLFAVASFADYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAATHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGAVFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVLSA 354 P +R A+L HYR+P+D++ + +A+ L + T + +I V +A Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLHDVAASAVIPAPVEAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS-------- 406 L +DLNT A+ + ++A E+ K +D A +LG + L + + Sbjct: 346 LDDDLNTPQALAEVARIAGEARKANDAADRARLKAELLGAGLALGLLQQEPAAWFSRGAD 405 Query: 407 ----IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I LV ER K K F+ AD IR+QL +G +LED + RWK+ Sbjct: 406 AGDDARIAALVDERSAAKKAKDFARADAIRQQLADEGIVLEDTA------QGVRWKR 456 >gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 711 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 188/441 (42%), Positives = 257/441 (58%), Gaps = 21/441 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++++ RK F +DP N+R+Y CGPTVYD AHIGN R M+ D+L RLLR+ Y Sbjct: 7 QLTLHDSRSRKTVPFAPLDPGNVRVYYCGPTVYDLAHIGNLRAMVTADILVRLLRHLYPR 66 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI RAR + I +T++ + F +D + L P +P Sbjct: 67 --VTYVRNITDVDDKINTRARAN------GETIDSLTARTIRDFHEDLDAVGILPPDIEP 118 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+HI +M+ LI +I GHAYEA ++F S P YG+ S R ++ G RV Sbjct: 119 RATHHIAEMLTLIGQLIDSGHAYEAQGHVLFAVSRFPAYGALSGRSPEDLLAGARVEVAP 178 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P PGWESPWGRGRPGWHIECSAMS YLG+ FDIHGGG DL+FP Sbjct: 179 YKRDPGDFVLWKPSAPDLPGWESPWGRGRPGWHIECSAMSHRYLGESFDIHGGGSDLLFP 238 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS C + AN W+HN L + G KMSKS GNF+T+ + L P Sbjct: 239 HHENELAQSQCCFPHGRFANHWVHNAMLLVNGEKMSKSLGNFLTVRDALSVS-------P 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPA-VLSALYND 358 A +RL +L YR ++FT+ L +A+ L+++ T + PA VL+AL +D Sbjct: 292 AEALRLLLLHAQYRSVLNFTLAGLEDAKQTLNRFYRAVGDTPPDGTVPVPAPVLAALCDD 351 Query: 359 LNTVSAIQALHKLA-RESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERL 417 LNT A+ +H LA R + D A+ +LG+ E + ERL Sbjct: 352 LNTPRALAEMHALADRALAGDRDAALGLRAAGQLLGLLGQTEDAWFRAGTYVHPETIERL 411 Query: 418 ILLKMKKFSSADYIRKQLESK 438 I+ + S D+ ++ S+ Sbjct: 412 IVERQDARKSRDFCPRRRYSR 432 >gi|119386770|ref|YP_917825.1| cysteinyl-tRNA synthetase [Paracoccus denitrificans PD1222] gi|187629836|sp|A1B9D5|SYC_PARDP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119377365|gb|ABL72129.1| cysteinyl-tRNA synthetase [Paracoccus denitrificans PD1222] Length = 462 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 197/452 (43%), Positives = 268/452 (59%), Gaps = 33/452 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT R+ F+ IDP N+R+Y+CGPTVYD AH+GNARP++V DVL RLLR+ G Sbjct: 3 EIRLTNTRTRRKEVFRPIDPQNVRLYLCGPTVYDRAHLGNARPVVVIDVLVRLLRHLLGA 62 Query: 64 KCVTYVRNITDIDDKI----IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 VTYVRN TD+DDKI + R P + + I T + + D L P Sbjct: 63 DHVTYVRNFTDVDDKINATALARKEAGTPGT-LEELIRERTHETIGWYHADMDALGAERP 121 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H+PRAT++I +MI +I+ +I GHAY + ++F S +YG S R +D+ G RV Sbjct: 122 DHEPRATDYIGEMIAMIETLIAGGHAYARDGHVLFRVRSYADYGKLSGRSVDDMIAGARV 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG+ FDIH GG+D Sbjct: 182 EVAPFKEDPMDFVLWKPSDDELPGWDSPWGRGRPGWHIECSAMSYELLGESFDIHAGGID 241 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQSCCA A +W+HN L +EGRKMSKS GNF T+ +LL+ Sbjct: 242 LQFPHHENEIAQSCCAHPHGDFARVWLHNEMLQVEGRKMSKSLGNFFTVRDLLD------ 295 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------VLS 353 + P VIR +L THYR+P+D+T ++ EAE +L +W ++PA V++ Sbjct: 296 QGIPGEVIRFVLLSTHYRKPMDWTAEKAREAEAVLRRWRGLVAG---VEPAPGPAPAVVA 352 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK------NISI 407 AL +DLNT AI ALH++A + P A A +LG+ E L ++S Sbjct: 353 ALADDLNTAGAIAALHEMAGQGDG-----PGLLAGARMLGL--LTEDLGGWIAEGPDLSA 405 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E++ R K FS+ D ++++L G Sbjct: 406 LTERMAALRADAKASKDFSAVDALKQRLLDAG 437 >gi|329849853|ref|ZP_08264699.1| cysteinyl-tRNA synthetase [Asticcacaulis biprosthecum C19] gi|328841764|gb|EGF91334.1| cysteinyl-tRNA synthetase [Asticcacaulis biprosthecum C19] Length = 465 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 195/468 (41%), Positives = 262/468 (55%), Gaps = 44/468 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K++I++TL R EFQ +P + +YVCGPTVY +AHIGNARP++VFDVL+RLLR YGE Sbjct: 2 KLQIHDTLRRDKVEFQPQNPQRVTLYVCGPTVYSYAHIGNARPVVVFDVLFRLLRTIYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITD+DDKI + A + I +IT+ + +D L L PT +P Sbjct: 62 DHVIYARNITDVDDKINKAAMDQGVEI------DVITNHFADIYNQDMATLGALRPTLEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T+++ ++ I I+ +GHAY ++FD S YG+ SRR +D+ G RV Sbjct: 116 RVTHNMAAIVDQIAAIVANGHAYAEQGHVLFDVESFKTYGALSRRSVDDMIAGARVEVAP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S EP W+SPWG GRPGWHIECSAM LG DIHGGG DLIFP Sbjct: 176 YKRNPQDFVLWKPSKTGEPVWDSPWGPGRPGWHIECSAMIEANLGLPIDIHGGGHDLIFP 235 Query: 244 HHENEIAQSCCADRI----EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HHENEIAQ CA + A+ W+HNGFL +G KMSKS GN +++L+ Sbjct: 236 HHENEIAQGLCAQHAHGHDSEYAHYWMHNGFLTFDGDKMSKSLGNVKLVHDLI------- 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQ-------RLTEAEILLSKWPQTSTSKGIIDPAVL 352 + P VIR A+L HYR P+D+T + RL L K+ PAVL Sbjct: 289 KQVPGEVIRAALLSAHYRGPLDWTGELIAQTQSRLDGMYGTLRKFAAVPVRDEATPPAVL 348 Query: 353 SALYNDLNTVSAIQALHKLARE----------STKNHDLLPIFNASAHILGI------EV 396 AL +DLNT A L LA+ LL A+ +LG+ Sbjct: 349 EALSDDLNTPRAFAELSALAKALETAADDAARIAAKSQLL----AAGKVLGLLQGDAEAW 404 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K +++++++ I+ L+ ER+ K +S AD IRK L+ G + D Sbjct: 405 FKAGVDEDLTVKIDALIAERIAARTAKNWSEADRIRKALDELGVEVMD 452 >gi|21243088|ref|NP_642670.1| cysteinyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] gi|24418693|sp|Q8PK23|SYC_XANAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21108603|gb|AAM37206.1| cysteinyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] Length = 476 Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 199/496 (40%), Positives = 269/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSADLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA-- 350 P +R A+L HYR+P+D++ + +A+ L + T + S + P+ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALQADSGNDVAPSRT 345 Query: 351 ----VLSALYNDLNTVSAIQALHKLARE--------------STKNHDLLPIFNASAHIL 392 V SAL +DLNT A+ + +A E ST+ DL + Sbjct: 346 IPVEVESALEDDLNTPLALSVIASIASEARALRNELVHGGEPSTRMSDLHAVHAKLLGAG 405 Query: 393 GIEVCKEH---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFSRGTDAGDDARITALVEERSTAKKAKDFARADAIRKQLAEEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DTP------QGVRWKR 475 >gi|67458460|ref|YP_246084.1| cysteinyl-tRNA synthetase [Rickettsia felis URRWXCal2] gi|75537070|sp|Q4UND9|SYC_RICFE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|67003993|gb|AAY60919.1| Cysteinyl-tRNA synthetase [Rickettsia felis URRWXCal2] Length = 459 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 203/477 (42%), Positives = 282/477 (59%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D + ++MYVCGPTVYD HIGN+R ++V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQTKVKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GE+ V YVRNITD+DDKII+RA E SI IN+ +T K TQ+F + L CL P+ Sbjct: 61 FGEQSVKYVRNITDVDDKIIDRA--ELLSITINE----LTDKVTQEFHTNMAYLGCLLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G R+ Sbjct: 115 IEPKATEHIDVMIEIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVRIE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+P DF+LWK + P E ++SPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKHPQDFVLWKPAKPNESANMNFKSPWGFGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ L++ K+ Sbjct: 235 ADLIFPHHTNEIAQSRCAFPDSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRNLMD-KEI 293 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + K + + Sbjct: 294 SGE-----VVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHNFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ E K + I A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEEKQLNASAII-TCANFIGLMNKTPHEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + I +L+ +RL K K + AD IR QL + ILED PD T W+++ Sbjct: 408 VDELYINELLNKRLEAKKQKNWLLADQIRNQLLEEKIILED--KPDG---TTIWRKE 459 >gi|157825244|ref|YP_001492964.1| cysteinyl-tRNA synthetase [Rickettsia akari str. Hartford] gi|187630857|sp|A8GM31|SYC_RICAH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157799202|gb|ABV74456.1| cysteinyl-tRNA synthetase [Rickettsia akari str. Hartford] Length = 459 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 197/460 (42%), Positives = 274/460 (59%), Gaps = 28/460 (6%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ +YNTL R F D +NI+MYVCGPTVYD HIGN+R ++V+D+LYR++ Sbjct: 1 MQIQLHLYNTLSRTKEVFNPQDQANIKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +G + V YVRNITD+DDKII+RA E I IN+ +T K TQ+F + L C+ P Sbjct: 61 FGSRAVKYVRNITDVDDKIIDRA--ELLGITINE----LTDKVTQEFHTNMAYLGCMLPN 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY +N + FD S PNY S R ++E G R+ Sbjct: 115 IEPKATEHIDVMIEIIERLIAKDHAYITDNHVYFDVLSAPNYTELSNRNLEEMFEGVRIE 174 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K +P DF+LWK + P E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 KSKTKNHPQDFVLWKPAKPNESTNMNFESPWGFGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ K Sbjct: 235 ADLVFPHHTNEIAQSRCAFPDSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMD-KDI 293 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + K + + Sbjct: 294 SGE-----VVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHNFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-----ESTKNHDL-LPIFNASAHILGI--EVCKEHLNKNI 405 +L +D+NT A++ ++ A+ ++ K L + A+ +G+ + E N + Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFIAKTEKERQLNASVIITCANFIGLMNQTPHEWFNSGV 408 Query: 406 -SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 S+ I +LV +RL K K + AD IR QL ILED Sbjct: 409 DSLYINELVNKRLEAKKQKNWLLADQIRNQLLEGKIILED 448 >gi|188576215|ref|YP_001913144.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520667|gb|ACD58612.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 474 Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 198/493 (40%), Positives = 271/493 (54%), Gaps = 58/493 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR YG Sbjct: 2 SLRLHNNLTRRVEPFTPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRRYG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+ + +PI S IT + + +D L + P +P Sbjct: 61 -ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPDIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 114 EATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVDVAP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL FP Sbjct: 174 YKRDPGDFVLWKPSSDELPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ P Sbjct: 234 HHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH-------P 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGI-----IDP 349 +R A+L HYR+P+D++ + +A L + T S G+ I Sbjct: 287 PEALRYALLSAHYRQPLDWSDGLIEQATNTLDRLYGTLRDLAALEACGSSGVEVSKTIPV 346 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEH-------- 400 V SAL +DLNT A+ + +A E+ ++L+ SA + + + Sbjct: 347 EVESALQDDLNTPLALSVIASIASEARALRNELVHGGEPSARMSELHAVRAKLLGAGLAL 406 Query: 401 --------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + I LVQER K K F+ AD IRKQL +G +LED Sbjct: 407 GLLQQDPAAWFSRGTDADDDARITALVQERSAAKKAKDFARADAIRKQLADEGIVLEDTP 466 Query: 447 NPDNGQRMTRWKQ 459 + RWK+ Sbjct: 467 ------QGVRWKR 473 >gi|94310045|ref|YP_583255.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] gi|93353897|gb|ABF07986.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] Length = 472 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 200/476 (42%), Positives = 262/476 (55%), Gaps = 45/476 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +YN+L RK + P + MYVCGPTVY+FAHIGNARP +VFDVL RLLR Sbjct: 1 MTSALSLYNSLTRKKEPLRTGQPGRVTMYVCGPTVYNFAHIGNARPAVVFDVLARLLREQ 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y E V Y RN TD+DDKI A E +PI IT++ + +D L L P Sbjct: 61 YAE--VVYARNFTDVDDKINASAAAE--GVPIG----TITARYIDAYHEDMRALGVLIPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR T HIP +I LIQ +I +G+AY + ++F S P YG S R+ ++ G RV Sbjct: 113 LEPRVTEHIPAIIALIQRLIANGNAYVEQDHVLFHVPSFPAYGQLSGRRPEDMLAGVRVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK ST PGW SPWGRGRPGWHIECSAM +LG DIHGGG DL Sbjct: 173 VAPYKRDPLDFVLWKPSTAEVPGWPSPWGRGRPGWHIECSAMIGQHLGSTIDIHGGGQDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ CA+ E W+HN F+ ++G+KMSKS GN + + +LL Sbjct: 233 IFPHHENEIAQGTCANG-ELYCRTWVHNSFVTVDGQKMSKSLGNVLLLRDLLGQA----- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQR-LTEAEILLSKWPQTSTSKGI-IDPA------VL 352 P IRLA+L HYR P+D+ QR LT + LL + ++ I I P V+ Sbjct: 287 --PGEAIRLALLSAHYRHPLDWNAQRLLTARQTLLRFYRGLKMAEHIEISPGEEPDEEVI 344 Query: 353 SALYNDLNTVSAIQALHKLARESTK----------------NHDLLPIF-----NASAHI 391 +AL NDLN A+ LH L E K + LL +F +A + Sbjct: 345 AALNNDLNIPGALARLHVLLAELEKAGADASRSVAKARMMASGRLLGLFQQDPNSALRGL 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 G V + I+ LV ER K + F+ AD +R++L + G ++ D N Sbjct: 405 AGAAVTHGIATTADAARIDHLVAEREQARKRRDFARADALREELGAAGVLVHDTPN 460 >gi|289422515|ref|ZP_06424358.1| cysteine--tRNA ligase [Peptostreptococcus anaerobius 653-L] gi|289157087|gb|EFD05709.1| cysteine--tRNA ligase [Peptostreptococcus anaerobius 653-L] Length = 467 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 192/489 (39%), Positives = 281/489 (57%), Gaps = 55/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ RK EF ++ ++MYVCGPTVY+F H+GNARP VFD L R Y E Sbjct: 1 MKVYNTMTRKKEEFIPLEEGKVKMYVCGPTVYNFIHLGNARPFTVFDTLRRYFEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII+R+ +E S P + K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIIKRSHEEGIS-P-----EEVAEKYIKEYFIDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I ++I IQ+++ G+AYE+N +++F T YG S + I+E ++G R+ Sbjct: 113 VTDNIKEIISFIQDLVDKGYAYESNGDVLFRTREFKEYGKLSHQNIEELELGARIDVDDK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MSS YLG DIH GG DL FPH Sbjct: 173 KEDPLDFVLWKAKKDGEPGWKSPWGEGRPGWHIECSVMSSRYLGNTIDIHAGGQDLQFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + AN W+HNG++N++G KMSKS GNF T+ E+ E G Sbjct: 233 HENEIAQSECRNG-HVFANYWMHNGYINVDGEKMSKSLGNFFTVREIAEKYDLG------ 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLT----EAEILLSKWPQTSTS---KGII 347 ++R +L THYR P++F+ ++RLT AE ++SK T S G++ Sbjct: 286 -LVRFFLLSTHYRNPVNFSDTILDQAKAGLERLTNARDNAEFMMSKLEDTKMSPEETGLV 344 Query: 348 DP------AVLSALYNDLNTVSAIQALHKLAR------ESTKNHDL----LPIFNASAHI 391 D + A+ +DLNT AI A+ +LA+ + T + + + +FN + Sbjct: 345 DELNSYKTKFIEAMDDDLNTSDAISAIFELAKFMNTNIKDTSSKEFIGLNIDLFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I N +++ +E+++ +R K K F+ AD IR++L G ++ED + Sbjct: 405 LNIANKSVEENDDLARTVEEMIAKRAEAKKNKDFALADKIREELLEMGIVIEDTR----- 459 Query: 452 QRMTRWKQK 460 + +WK+K Sbjct: 460 -QGVKWKRK 467 >gi|269958884|ref|YP_003328673.1| cysteinyl-tRNA synthetase [Anaplasma centrale str. Israel] gi|269848715|gb|ACZ49359.1| cysteinyl-tRNA synthetase [Anaplasma centrale str. Israel] Length = 467 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 201/487 (41%), Positives = 280/487 (57%), Gaps = 53/487 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL F D + +YVCGPTVYD AHIGNAR ++V+DVL+RLL+ Y E Sbjct: 1 MRLHDTLRASKRVFSPRDGKRVGVYVCGPTVYDLAHIGNARSVVVYDVLFRLLKALYPE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII A E SI + +T+ T+ F +D L CL PT +P+ Sbjct: 60 -VVYVRNITDVDDKIINAANSEGKSI------AELTAHYTKLFHEDIKELNCLPPTFEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M+++I +I GHAY + F S +YG+ S RK+ + G+RV Sbjct: 113 ATEEIETMLFIIGKLIETGHAYVRGGTVYFSVESYEHYGALSGRKLCDMISGSRVEVVAE 172 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK +T ++ W SPWG GRPGWH+ECSAMS YLG+ FDIHGGG DL Sbjct: 173 KLHPGDFVLWKPATDLDMKLGACWSSPWGVGRPGWHVECSAMSYRYLGESFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETKKFGG 299 +FPHHENE++QSCCA + A W+HNGFL + G KMSKS GN IT+ LL + G Sbjct: 233 MFPHHENELSQSCCAFHGSEYARYWVHNGFLTVNGGEKMSKSLGNVITVRGLLNSGVDG- 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGI----ID 348 V+R A L THYR+P+D+ + + +A+ L+K +P + G+ + Sbjct: 292 -----EVVRYAFLSTHYRKPLDWGDKLVLDAKEALNKIYRSCEGFPAKLLNTGLEYVDVH 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI-------- 394 V+S+L +D+NT AI ALH+L +E K D L + N SA ++G+ Sbjct: 347 DGVMSSLQDDINTPGAIAALHELVKEINKASDSDEKLRLAKMLNKSAMLMGLFHNFPERK 406 Query: 395 -EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + +N++ IE+L+ +R+ K F AD IRK L S G + D K+ Sbjct: 407 FSSIQNLVNED---EIERLIAKRIEAKKCGDFKLADEIRKNLSSMGIGVSDGKDGS---- 459 Query: 454 MTRWKQK 460 TRW +K Sbjct: 460 -TRWHRK 465 >gi|330993327|ref|ZP_08317262.1| Cysteinyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1] gi|329759357|gb|EGG75866.1| Cysteinyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1] Length = 459 Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 195/471 (41%), Positives = 271/471 (57%), Gaps = 39/471 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++++ R F + P N+R+Y CGPTVYD AHIGN R M+ DVL RLLR+ Y Sbjct: 12 RLHLHDSRTRSTVPFVPLAPDNVRVYYCGPTVYDLAHIGNLRAMLTADVLVRLLRHLYPR 71 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITD+DDKI RA ++I+ +T++ F D ++ L P +P Sbjct: 72 --VTYVRNITDVDDKINARAHAN------GESIADLTARTIADFHADLAAVSILPPDVEP 123 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+HI +M +I +I GHAYEA ++F + P+YG+ S R D+ G RV Sbjct: 124 RATHHIGEMQDMIARLIESGHAYEAEGHVLFAVGTYPSYGALSGRTPDDLIAGARVEVAP 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS YLG+ FDIHGGG DL+FP Sbjct: 184 YKRDPGDFVLWKPSDDQTPGWDSPWGRGRPGWHIECSAMSHRYLGESFDIHGGGSDLLFP 243 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS C AN W+HN L + G KMSKS GNF+T+ ++L R P Sbjct: 244 HHENERAQSMCCHPHGHFANHWVHNAMLLVNGEKMSKSLGNFLTVRDVL-------RDTP 296 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLSA 354 A +RL +L YR ++FT + L EA +L ++ + +DP +V+ Sbjct: 297 AEALRLLLLRAQYRSVLNFTREGLDEARQMLDRFYRALEK---LDPDQPPVPAPDSVVQV 353 Query: 355 LYNDLNTVSAIQALHKLARES-TKNHDLLPIFNASAHILGI-----EVCKEHLNKNISIA 408 L +DLNT A+ +H LA + T + A+ +++G+ E K Sbjct: 354 LCDDLNTPRALAEMHALADAALTGDRVAAAQLKAAGNLIGLLNDTPEAWFRGGAKVDPAH 413 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L++ERL K + F+ AD IR L ++G +LED G + T W+Q Sbjct: 414 IERLIEERLAARKARDFARADEIRNTLAAQGIVLED------GPQGTTWRQ 458 >gi|39998454|ref|NP_954405.1| cysteinyl-tRNA synthetase [Geobacter sulfurreducens PCA] gi|61216254|sp|Q747A2|SYC_GEOSL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|39985401|gb|AAR36755.1| cysteinyl-tRNA synthetase [Geobacter sulfurreducens PCA] Length = 481 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 199/501 (39%), Positives = 276/501 (55%), Gaps = 67/501 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +F ++P ++MYVCG TVYD HIG+AR +VFD++YR LR+ E Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA +E +P N +I+ + +F +D L PT+QP+ Sbjct: 62 -VTYVRNYTDVDDKIINRANKE--GVPFN----VISERFIAEFDRDMAALGLDLPTYQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +I+ ++ G AY A+ ++ F + Y S+R ++E + G R+ Sbjct: 115 ATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A WIHNGF+N+ KMSKS GNF TI E+LE S+ A Sbjct: 235 HENEIAQSEAANG-KPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLE-------SYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDPAVL- 352 V+R +L HYR PIDF+ Q L EA L + T G ID + Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGRIDEELAE 346 Query: 353 ----------SALYNDLNTVSA-------IQALHKLARESTKNHDLLP----IFNASAHI 391 A+ +D NT A ++A++++ E + +L + + Sbjct: 347 KAAGLPTRFREAMDDDFNTAQALGYVFDLVRAVNRVLAEGEIDRAVLASAREAIDRVGAV 406 Query: 392 LGIEVCK-----EHLNKNISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 LG+ + E L + A IE+L++ER K + F AD IR L ++G Sbjct: 407 LGLFTSEPGAFVERLKSRKAAALPIEAAEIERLIEERNAARKARDFRRADEIRDTLAAQG 466 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 467 ILLLD------SAQGTTWKVK 481 >gi|315498776|ref|YP_004087580.1| cysteinyl-tRNA synthetase [Asticcacaulis excentricus CB 48] gi|315416788|gb|ADU13429.1| cysteinyl-tRNA synthetase [Asticcacaulis excentricus CB 48] Length = 463 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 199/481 (41%), Positives = 269/481 (55%), Gaps = 44/481 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++ +TL+R +F +P + MYVCGPTVY++AHIGNARP++VFDVL+RLLRY YGE Sbjct: 2 KLRLSDTLKRHKVDFVPKNPQRVTMYVCGPTVYNYAHIGNARPVVVFDVLFRLLRYIYGE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V Y RNITD+DDKI ++A E I +ITSK + D L L PT QP Sbjct: 62 EAVIYARNITDVDDKINQKAMAEGVDI------DVITSKFADIYNADMRALNALEPTIQP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T ++ ++ I +I +GHAY A ++FD S YG+ S R +D+ G RV Sbjct: 116 RVTQNMSAIVAQIAALIRNGHAYAAEGHVLFDVESYRAYGALSNRSLDDMIAGARVEVAP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM LG DIHGGG DLIFP Sbjct: 176 YKKNPQDFVLWKPSKPGEPKWPSPWGEGRPGWHIECSAMIEANLGLPIDIHGGGHDLIFP 235 Query: 244 HHENEIAQSCCAD-----RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 HHENEIAQ CA + E A W+HNGFL ++ KMSKS GN + +++L+ Sbjct: 236 HHENEIAQGVCAQHGHSHQEESYARYWMHNGFLTMDAEKMSKSLGNVLLVHDLI------ 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDF-------TVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 + +P VIRLA+L HYR P+D+ T +RL L K + + AV Sbjct: 290 -KEFPGEVIRLALLSAHYRAPLDWNSDLLVQTRKRLDGLYEALRKAANVPVVETAVPEAV 348 Query: 352 LSALYNDLNT------VSAIQALHKLARESTKNHDLLPIFNASAHILGI------EVCKE 399 + AL +DL+T +SA+ + + A +S K + A A ++GI K Sbjct: 349 IDALCDDLSTPRVLAELSALASALEKASQSEKPLAKAQLLAAGA-LMGILQQEAESWFKG 407 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + ++S +E L+ R K ++ AD IR +L + + D G WK Sbjct: 408 GADDDLSAKVETLLIARKTARAEKNWAEADRIRNELTALNVEVMD------GPEGATWKL 461 Query: 460 K 460 K Sbjct: 462 K 462 >gi|307635173|gb|ADI86121.2| cysteinyl-tRNA synthetase [Geobacter sulfurreducens KN400] Length = 481 Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 199/501 (39%), Positives = 276/501 (55%), Gaps = 67/501 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +F ++P ++MYVCG TVYD HIG+AR +VFD++YR LR+ E Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA +E +P N +I+ + +F +D L PT+QP+ Sbjct: 62 -VTYVRNYTDVDDKIINRANKE--GVPFN----VISERFIAEFDRDMAALGLDLPTYQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +I+ ++ G AY A+ ++ F + Y S+R ++E + G R+ Sbjct: 115 ATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A WIHNGF+N+ KMSKS GNF TI E+LE S+ A Sbjct: 235 HENEIAQSEAANG-KPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLE-------SYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDPAVL- 352 V+R +L HYR PIDF+ Q L EA L + T G ID + Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGRIDEELAE 346 Query: 353 ----------SALYNDLNTVSA-------IQALHKLARESTKNHDLLP----IFNASAHI 391 A+ +D NT A ++A++++ E + +L + + Sbjct: 347 KAAGLPTRFREAMDDDFNTAQALGYVFDLVRAVNRVLAEGEIDRAVLASAREAIDRVGAV 406 Query: 392 LGIEVCK-----EHLNKNISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 LG+ + E L + A IE+L++ER K + F AD IR L ++G Sbjct: 407 LGLFTSEPGAFVERLKSRKAAALPIEAAEIERLIEERNAARKAQDFRRADEIRDTLAAQG 466 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 467 ILLLD------SAQGTTWKVK 481 >gi|257095793|ref|YP_003169434.1| cysteinyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048317|gb|ACV37505.1| cysteinyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 465 Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 196/474 (41%), Positives = 272/474 (57%), Gaps = 39/474 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 I+++NTL R+ F DP + MYVCGPTVY++ HIGNARP++VFDVLYRLL +Y + Sbjct: 2 SIRLHNTLTRQKDVFMPADPQRVTMYVCGPTVYNYVHIGNARPVVVFDVLYRLLSRHYPQ 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITD+DDKI A + I I+ + + +D T+L L PT +P Sbjct: 62 --VIYARNITDVDDKINAAAAAN------GEPIRILAERYATAYREDMTQLNALPPTIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIPQMI LI+ +I HAY A ++F S+P+YG S R+ D+ G RV Sbjct: 114 WATGHIPQMIALIERLIERSHAYVAEGHVLFHVPSLPDYGKLSGRQRDDMIAGARVEVAP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++PADF+LWK ST +PGW SPWG GRPGWH+EC+AM +LG DIHGGG DLIFP Sbjct: 174 YKRDPADFVLWKPSTAAQPGWHSPWGFGRPGWHMECTAMIHTHLGPSIDIHGGGQDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ A+ + W+HNG++ ++G KMSKS GNF T+ +LL+ +P Sbjct: 234 HHENEIAQGEGANG-GQYCRYWLHNGYVTVDGEKMSKSLGNFRTVRDLLQY-------YP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------AVLSAL 355 VIR A+L HYR+P+DF++ L +A L + + DP AV +AL Sbjct: 286 GEVIRYALLAGHYRKPLDFSLSALDQARAALDRLYGSLQPFAAPDPAPEGVRAEAVEAAL 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI---------EVCKEH 400 +DLNT A+ LH+ A K D LL +A +LG+ + + Sbjct: 346 ADDLNTPLALGCLHEAATALRKCTDPAEQSRLLATLRDAADLLGLLQQNPATWRQQARAQ 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 N + IE+L+ R + + F+ AD +R++L + G +ED + R+ Sbjct: 406 DNCPATETIEQLIAARRVARARRDFARADELRQELLTLGIGIEDSATGTSWHRL 459 >gi|213019206|ref|ZP_03335013.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995315|gb|EEB55956.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 440 Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 198/452 (43%), Positives = 266/452 (58%), Gaps = 38/452 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVYD AHIGNAR ++V+DVL+RLL++ YG+ VTYVRNITDIDDKII A ++ Sbjct: 1 MYVCGPTVYDTAHIGNARSIVVYDVLFRLLKFCYGK--VTYVRNITDIDDKIINAANEK- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 N I I+ T+ F +D + C PT++P+AT +I +I LI++++ GHAYE Sbjct: 58 -----NSNIESISKYYTKTFHEDMESINCAEPTYEPKATENIDNIIKLIESLLQAGHAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP----MEPG 203 +N + F S P YG S +KIDE G+RV +KK+P DF+LWK + + Sbjct: 113 SNKHVYFSVESYPEYGVLSGKKIDELNYGSRVEVGENKKHPGDFVLWKPANETDYKLSSH 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL FPHHENEIAQS A A Sbjct: 173 WNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQSKSAFAESTFAK 232 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNGFL + KMSKS N + + +LL++ G VIR A+L THYR+P+D+T Sbjct: 233 YWVHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG------EVIRYALLKTHYRKPLDWT 286 Query: 324 VQRLTEAEILLSKWPQTSTSKGI------IDPAVLSALYNDLNTVSAIQALHKLARESTK 377 ++E++ L+K+ + S I + + AL NDLN A+ LH++A E K Sbjct: 287 ENVISESQETLNKFYRLLRSTCIEESDTEVSKDFIEALKNDLNIPEAVAILHEMATEINK 346 Query: 378 NHD------LLPIFNASAHILGI--EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSA 428 + L F SA +GI +E +S IE+L+ R + + K + +A Sbjct: 347 TSNEYEKLKLTKKFVKSARFIGILESSYQEWFASGVSHQEIERLIDLRKVAKQNKDYDTA 406 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 D IR+QL+ G + DN T W K Sbjct: 407 DKIREQLKQMGVTI-----SDNEDGTTTWYGK 433 >gi|325920178|ref|ZP_08182138.1| cysteinyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865] gi|325549358|gb|EGD20252.1| cysteinyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865] Length = 481 Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 201/501 (40%), Positives = 277/501 (55%), Gaps = 63/501 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DP++ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPTSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F +S +YG SRR DE G RV Sbjct: 113 IEPAATAHIPQIMAMIEQLIANGHAYAAEGHVLFAVASFEHYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGATIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAV 351 P +R A+L HYR+P+D++ + +A+ L + +T + G P Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAAVETDSGVGPTQPTT 345 Query: 352 L-----SALYNDLNTVSAIQALHKLARESTKN-HDLLPIFN-----ASAHILGIEVCKEH 400 + SAL +DLNT A+ AL KLA+E+++ HDL P + H+ + K Sbjct: 346 IPDDVESALDDDLNTPLALAALAKLAKEASRALHDLAPAGGPDSERSGEHLAALRRAKSD 405 Query: 401 ----------------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + I LV+ER K K F+ AD IRKQL + Sbjct: 406 LLGAGLALGLLQQDPAAWFSRGTDAGDDARITTLVEERNAAKKAKDFARADAIRKQLADE 465 Query: 439 GFILEDYKNPDNGQRMTRWKQ 459 G +LED + RWK+ Sbjct: 466 GIVLEDTP------QGVRWKR 480 >gi|325918144|ref|ZP_08180296.1| cysteinyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] gi|325535619|gb|EGD07463.1| cysteinyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] Length = 476 Score = 348 bits (893), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 200/504 (39%), Positives = 268/504 (53%), Gaps = 74/504 (14%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSCPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITHRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F +S YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFAVASFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK ST PGWESPW RGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSTDDLPGWESPWSRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------PQTSTSKG 345 P +RLA++ HYR+P+D++ + +A+ L + P S S Sbjct: 288 --PPEALRLALVSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDVAALDAGDAPDGSASPA 345 Query: 346 IIDPA-VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHL--- 401 I PA V +AL +DLNT A+ + +A E+ + N H I + L Sbjct: 346 I--PAEVEAALDDDLNTPQALSIIASIAAEARA------LRNQVTHGADISARRAELREI 397 Query: 402 --------------------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 N I LV+ER K K F+ AD IRKQL Sbjct: 398 KTRLLGAGLALGLLQQDPAAWFARGTNAGDDARITALVEERSTAKKAKDFARADAIRKQL 457 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 +G +LED + RWK+ Sbjct: 458 ADEGIVLEDTP------QGVRWKR 475 >gi|296114670|ref|ZP_06833322.1| cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295978766|gb|EFG85492.1| cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 471 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 193/478 (40%), Positives = 274/478 (57%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL R F DP+ + MYVCGPTVY++AH+GNAR +VFD+LYR+LR+ YG Sbjct: 14 LRLTNTLSRSKQIFVPRDPNRVTMYVCGPTVYNYAHLGNARSAVVFDLLYRILRHSYGR- 72 Query: 65 CVTYVRNITDIDDKI-IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RN TD+DDKI E R P I IT + + D L L P +P Sbjct: 73 -VLYARNFTDVDDKINAEAVRTGQP-------IGAITDRFISAYHADMAALGVLRPDFEP 124 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T H+ +I LI ++ GHAY+A ++F S +YG S R ++ G RV Sbjct: 125 RVTEHLSDIIALIDRLLEAGHAYQAAGHVLFHVPSFADYGRLSGRSREDVIAGARVEVAP 184 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK S+ PGWESPWGRGRPGWHIECSAM+ H LG D+HGGG DLIFP Sbjct: 185 FKRDPADFVLWKPSSDDAPGWESPWGRGRPGWHIECSAMTEHCLGLPIDLHGGGQDLIFP 244 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + W+HNGF+ ++GRKMSKS GN + ++LLE + G++ Sbjct: 245 HHENEIAQSVSARDGAAYCDFWVHNGFVTVDGRKMSKSLGNVVLAHDLLE--RHDGQT-- 300 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKG------IIDPAVLS 353 IRLA+L HYR+P+D++ + LTE+ LS+ + T++S I+ V+ Sbjct: 301 ---IRLALLSAHYRQPLDWSDKLLTESGRALSRLKRLIADTASSDHDACAVPIVRNRVVQ 357 Query: 354 ALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASAHILGI------EVCKEHL 401 AL +DLNT +A+ AL +ARE + L + +LG+ + + Sbjct: 358 ALADDLNTPAAMTALFSIARELRHADHVAERSRLRRELVEAVTLLGLKHDSPPDCLSQGT 417 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ + A+ ++V +R + + K + AD +R L KG +L+D TRW++ Sbjct: 418 DETSNAALAEMVAQRDVARRRKDYQEADILRDALLLKGVVLDDT------HEGTRWRR 469 >gi|158521678|ref|YP_001529548.1| cysteinyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] gi|158510504|gb|ABW67471.1| cysteinyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] Length = 479 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 201/497 (40%), Positives = 265/497 (53%), Gaps = 65/497 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN L K F ++P + MYVCGPTVY HIG+AR ++VFDV+ R LR Sbjct: 3 LSIYNVLTGKKELFVPVNPGKVGMYVCGPTVYGPCHIGHARSVVVFDVIARYLRV--AGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA +E + I K +F +D L T +P+ Sbjct: 61 DVTYVRNFTDVDDKIIHRAAEEGKTS------EQIAEKYIAEFYRDMDALFVQRATVEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ +IQ ++ G AYEA ++ F + P YG S RK+D+ + G R+ Sbjct: 115 ATEHIDDILAVIQILVNKGVAYEAGGDVFFSVEAFPGYGKLSGRKLDQMEAGARIEVDKR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK P EP WESPWGRGRPGWHIEC+AMSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KRNPFDFVLWKAEKPGEPSWESPWGRGRPGWHIECTAMSSRYLGQTFDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A E A W+HNGF+ + KMSKS NF INE+LE ++ Sbjct: 235 HENEIAQSEAAFGRE-FARFWVHNGFVQINQEKMSKSLNNFKMINEILE-------AYHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------PQTSTSKGI 346 +RL +L +HYR PIDF+ + EA L K P + G Sbjct: 287 ETVRLFLLSSHYRSPIDFSDTSMAEAGAGLDKLYTALGRVEALTPSGEKPSPASDGDAGE 346 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARE----------------------STKNHDLLPI 384 + A+ +D NT A+ AL + AR K+ D+L + Sbjct: 347 YWNSFCQAMDDDFNTARAVAALFETARHINRLLDQAGDLLTADVSAHYDVMRKSGDVLGL 406 Query: 385 FNASAHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 FN A + E K+ K ++ I+++V +R+ K K F+ AD +RKQL + Sbjct: 407 FNTPAQVY-FEGRKQAAAKKDAVDPAEIDRMVAQRVAARKAKDFAKADQLRKQLTDLNVV 465 Query: 442 LEDYKNPDNGQRMTRWK 458 LED +PD T WK Sbjct: 466 LED--SPDG---TTTWK 477 >gi|88606973|ref|YP_505147.1| cysteinyl-tRNA synthetase [Anaplasma phagocytophilum HZ] gi|109894881|sp|Q2GKF4|SYC_ANAPZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|88598036|gb|ABD43506.1| cysteinyl-tRNA synthetase [Anaplasma phagocytophilum HZ] Length = 462 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 203/480 (42%), Positives = 272/480 (56%), Gaps = 44/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T F ID + +++Y CGPTVYD AHIGNAR +V+DVL+RLLR Y E Sbjct: 1 MKLYDTFSAAKRVFDPIDSACVKIYACGPTVYDLAHIGNARSAVVYDVLFRLLRELYPE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII A + +I T + + F +D L CL+PT +PR Sbjct: 60 -VIYVRNITDVDDKIINAAAETGQNI------GDFTERYIRYFHEDMDALNCLSPTVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M+ LI ++ GHAY + F SS +YG S RKIDE G RV Sbjct: 113 ATAEIDTMLQLISRLVESGHAYVKGGSVYFSISSHRHYGRLSGRKIDEMISGNRVSIDAE 172 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK +T + WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DL Sbjct: 173 KLHPGDFVLWKPATEQDIKLGAAWESPWGGGRPGWHIECSAMSYRYLGESFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETKKFGG 299 +FPHHENE+AQ+ CA + A W+HNGFL + G KMSKS GN IT+ L + G Sbjct: 233 MFPHHENELAQNMCAFSGSEYARYWVHNGFLTVNAGEKMSKSLGNVITVRGLRNSGIEG- 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGI--------ID 348 VIR L THYR+P+D+ + + +A+ LSK ++ TS+ + + Sbjct: 292 -----AVIRYVFLCTHYRKPLDWNEKAIFDAQSALSKMRRSCEEFTSEELNSDIEAVGVH 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIE--VCKEH 400 +L AL +D+NT AI ALH L E K D L + N SA ++GI + Sbjct: 347 NMLLEALKDDMNTPMAIAALHALVGEINKTTDFKERLKLARVLNRSAKLMGITDGFAGKS 406 Query: 401 LNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + + I++L++ R +S AD IR QL S G +++D K+ +TRW + Sbjct: 407 AEEAVDVDKIQELLERRREARNGGNYSLADEIRDQLHSMGIVIKDDKDG-----VTRWSR 461 >gi|34580931|ref|ZP_00142411.1| cysteinyl-tRNA synthetase [Rickettsia sibirica 246] gi|28262316|gb|EAA25820.1| cysteinyl-tRNA synthetase [Rickettsia sibirica 246] Length = 459 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 198/461 (42%), Positives = 274/461 (59%), Gaps = 30/461 (6%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D +N++MYVCGPTVY HIGN+R +V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQANVKMYVCGPTVYYNPHIGNSRSGVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GEK V YVRNITD+DDKII+RA + I +T K T++F K+ L C+ P+ Sbjct: 61 FGEKAVKYVRNITDVDDKIIDRAAL------LGVTIDELTDKVTKEFHKNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G V Sbjct: 115 IEPKATKHIDVMIAIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVHVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L+ K+ Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLM-NKQI 293 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + + K + + Sbjct: 294 QGE-----VVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHDFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNAS-----AHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ S+K + + NAS A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFSSKTEEERQL-NASAIITCANFIGLMNKTPHEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + +LV +RL K K + AD IR QL + ILED Sbjct: 408 VDELYVNELVNKRLEAKKQKNWLLADQIRNQLLEEKIILED 448 >gi|78044929|ref|YP_361143.1| cysteinyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] gi|109894889|sp|Q3A9P1|SYC_CARHZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77997044|gb|ABB15943.1| cysteinyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] Length = 465 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 199/486 (40%), Positives = 268/486 (55%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL + EF +P + MYVCGPT Y++ HIGNARP++ FD + R Y E Sbjct: 1 MKIYNTLTKTKEEFIPREPGKVYMYVCGPTTYNYIHIGNARPIVFFDTVRRYFEYKGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII RA +E S PI + K ++ KD RL T P+ Sbjct: 60 -VIYVQNFTDIDDKIINRALEEGIS-PIE-----LGQKYIIEYFKDADRLGVKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I +++ +I G+AYE + F S +YG S R ++E K G RV Sbjct: 113 VTEHIPEIIEMVKGLIEKGYAYEVEGNVYFAVDSFSDYGKLSGRDLEELKAGARVEVDEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 173 KKNPLDFALWKKAKPGEPYWESPWGPGRPGWHIECSAMSLKYLGENFDIHGGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS A + A W+HNGF+ + KMSKS GNF + E+LE KF GR Sbjct: 233 HENEVAQS-EAFTGKPFARYWMHNGFITVNQEKMSKSLGNFFLVREILE--KFPGR---- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------------- 350 V+R +L THYR P+DF ++L EA+ L + + ++P Sbjct: 286 -VVRFFLLSTHYRSPLDFDDKKLNEAKAALERVDNFVQNLKEVNPLPGEARIEIQEKITN 344 Query: 351 ----VLSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFNASAHILGIE 395 A+ +D NT A+ +L +L R + N + GIE Sbjct: 345 FLRDFNEAMEDDFNTAQAMASLFELVRFGNTQIASGNLTAGDKKLFEEALNVYTQVFGIE 404 Query: 396 --VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 V ++ ++I+ +E L++ R L K KK+ AD+IR +L+ +G ILED + Sbjct: 405 FGVLEKIAGEDITPFVELLIEVRARLKKEKKYDLADFIRDELKKQGIILED------TPK 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKR 464 >gi|229586323|ref|YP_002844824.1| cysteinyl-tRNA synthetase [Rickettsia africae ESF-5] gi|259511841|sp|C3PMC1|SYC_RICAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|228021373|gb|ACP53081.1| Cysteinyl-tRNA synthetase [Rickettsia africae ESF-5] Length = 459 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 198/477 (41%), Positives = 278/477 (58%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D +N++MYVCGPTVY HIGN+R +V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQANVKMYVCGPTVYYNPHIGNSRSGVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GEK V YVRNITD+DDKII+RA + I +T K T++F K+ L C+ P+ Sbjct: 61 FGEKAVKYVRNITDVDDKIIDRAAL------LGVTIDELTDKVTKEFHKNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G V Sbjct: 115 IEPKATKHIDVMIAIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVHVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ + Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMDKQIQ 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L+ W + + K + + Sbjct: 295 G------EVVRLFLLSSHYRRPLDYNDKAIEDAKKTLNYWYRAIENINVQKIDLPHDFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ E + + I A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEERQLNASAII-TCANFIGLMNKTPNEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + + +LV +RL K K + AD IR QL + ILED PD T W+++ Sbjct: 408 VDELYVNELVNKRLEAKKQKNWLLADQIRNQLLEEKIILED--RPDG---TTIWRKE 459 >gi|114777193|ref|ZP_01452204.1| cysteinyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] gi|114552338|gb|EAU54821.1| cysteinyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] Length = 459 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 202/478 (42%), Positives = 278/478 (58%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT++R+ F I P +I MYVCG TVYD+ H+G+AR MIVFDV+YR L + + Sbjct: 3 LMLYNTIKREKEAFVPIRPGHIGMYVCGVTVYDYCHVGHARVMIVFDVIYRWLMHSGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TD+DDKII+RA + AI +T++ F D L CL PTH+PR Sbjct: 62 -VDYVRNFTDVDDKIIKRAAER------GIAIDALTNEMIDAFHADADALGCLRPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ MI +IQ ++ AY + ++++ +YG S +KIDE + G+RV Sbjct: 115 ATAHMDAMISMIQALMEKDMAYVSESGDVLYAVRGFSDYGQLSGKKIDELESGSRVDVDQ 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP W SPWG+GRPGWHIECSAMS +LG FDIHGGG+DL FP Sbjct: 175 SKRDPLDFVLWKMAKADEPAWASPWGQGRPGWHIECSAMSCGHLGDTFDIHGGGMDLKFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A+ A W+HNGF+N+ KMSKS GNF TI E+ E R P Sbjct: 235 HHENEIAQARAANG-GGFARYWLHNGFVNINAEKMSKSLGNFFTIREVTE------RYHP 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL------SKWPQTSTSKGIIDPAVL----- 352 V+R+ ML THYR P+DF+ L A+ L +K Q S G A+L Sbjct: 288 -EVLRMFMLGTHYRSPLDFSDAALDVAKSGLDRLYKTAKRCQESGVTGAGGQALLPHHFT 346 Query: 353 SALYNDLNTVSAI-------QALHKLARESTKNHDLLPIFNASAHILGI---EVCKEHLN 402 +A+ +D NT A+ +AL+K E+ L F A + +LGI + + Sbjct: 347 TAMDDDFNTPEALAVLFDTSRALNKGLNEAQDVTALAGQFTAMSALLGIVQQDTAIWFQS 406 Query: 403 KNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ + AIE L++ERL K + F+ AD IR +L ++G +LED + T WK+ Sbjct: 407 GDVDAAAIEALIEERLQARKNRDFARADAIRNELSAQGIVLEDSASG------TTWKK 458 >gi|238650546|ref|YP_002916398.1| cysteinyl-tRNA synthetase [Rickettsia peacockii str. Rustic] gi|259511842|sp|C4K199|SYC_RICPU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|238624644|gb|ACR47350.1| cysteinyl-tRNA synthetase [Rickettsia peacockii str. Rustic] Length = 459 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 199/477 (41%), Positives = 276/477 (57%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D +N++MYVCGPTVY HIGN+R +V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQANVKMYVCGPTVYYNPHIGNSRSGVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GEK V YVRNITD+DDKII+RA + I +T K T++F K+ L C+ P+ Sbjct: 61 FGEKAVKYVRNITDVDDKIIDRAAL------LGVTIDELTDKVTKEFHKNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G V Sbjct: 115 IEPKATKHIDVMIAIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVHVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ + Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMDKQIQ 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + K + + Sbjct: 295 G------EVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHDFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ E + + I A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEERQLNASAII-TCANFIGLMNKTPHEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + I +LV +RL K K + AD IR QL + ILED PD T W+++ Sbjct: 408 VDELYINELVNKRLEAKKQKNWLLADQIRNQLLEEKIILED--QPDG---TTIWRKE 459 >gi|225629958|ref|YP_002726749.1| Cysteinyl-tRNA synthetase [Wolbachia sp. wRi] gi|254781700|sp|C0R5B6|SYC_WOLWR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|225591939|gb|ACN94958.1| Cysteinyl-tRNA synthetase [Wolbachia sp. wRi] Length = 457 Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 199/475 (41%), Positives = 279/475 (58%), Gaps = 41/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +K F ID +++MYVCGPTVYD AHIGNAR ++V+DVL++LL++ YG+ Sbjct: 2 VRLYNTLTKKKELFIPIDKDHVKMYVCGPTVYDTAHIGNARSVVVYDVLFQLLKFCYGK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I IT+ + F D + C PT++P+ Sbjct: 61 -VTYVRNITDIDDKIINAASEK------NSNIESITTYYIKAFHDDMESINCKKPTYEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ +I LI++++ GHAYE++ + F+ S YG+ S +K DE G+RV + Sbjct: 114 ATENVDYIIKLIEHLLQSGHAYESDKHVYFNIESYHEYGALSGKKTDELVPGSRVEVNEN 173 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + ++ W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL Sbjct: 174 KKHPGDFVLWKPANDIDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A W+HNGFL + KMSKS N + + +LL++ G Sbjct: 234 QFPHHENEIAQSKSAFAGSMFAKYWMHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG-- 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIIDPAV 351 VIR A+L THYR+P+D+T +++A+ L+K+ + S S I Sbjct: 292 ----EVIRYALLKTHYRKPLDWTENVISDAQETLNKFYRLSRGLDTINIDESNAEISKDF 347 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEHLNK 403 + AL NDLN A+ LH++A + K + L F SA +G+ +E Sbjct: 348 IDALKNDLNIPEALAILHEMAAKINKMSNESEKLKLTESFVKSARFIGLLESSYQEWFTA 407 Query: 404 NIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +S IE+L+ R + K +++AD IR QL+ G + DN T W Sbjct: 408 GVSHQEIERLIDLRRAAKQNKDYNTADKIRDQLKQIGVTI-----SDNEDGTTTW 457 >gi|58699028|ref|ZP_00373873.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila ananassae] gi|58534456|gb|EAL58610.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila ananassae] Length = 468 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 199/475 (41%), Positives = 279/475 (58%), Gaps = 41/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +K F ID +++MYVCGPTVYD AHIGNAR ++V+DVL++LL++ YG+ Sbjct: 13 VRLYNTLTKKKELFIPIDKDHVKMYVCGPTVYDTAHIGNARSVVVYDVLFQLLKFCYGK- 71 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I IT+ + F D + C PT++P+ Sbjct: 72 -VTYVRNITDIDDKIINAASEK------NSNIESITTYYIKAFHDDMESINCKKPTYEPK 124 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ +I LI++++ GHAYE++ + F+ S YG+ S +K DE G+RV + Sbjct: 125 ATENVDYIIKLIEHLLQSGHAYESDKHVYFNIESYHEYGALSGKKTDELVPGSRVEVNEN 184 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + ++ W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL Sbjct: 185 KKHPGDFVLWKPANDIDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDL 244 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A W+HNGFL + KMSKS N + + +LL++ G Sbjct: 245 QFPHHENEIAQSKSAFAGSMFAKYWMHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG-- 302 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIIDPAV 351 VIR A+L THYR+P+D+T +++A+ L+K+ + S S I Sbjct: 303 ----EVIRYALLKTHYRKPLDWTENVISDAQETLNKFYRLSRGLDTINIDESNAEISKDF 358 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEHLNK 403 + AL NDLN A+ LH++A + K + L F SA +G+ +E Sbjct: 359 IDALKNDLNIPEALAILHEMAAKINKMSNESEKLKLTESFVKSARFIGLLESSYQEWFTA 418 Query: 404 NIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +S IE+L+ R + K +++AD IR QL+ G + DN T W Sbjct: 419 GVSHQEIERLIDLRRAAKQNKDYNTADKIRDQLKQIGVTI-----SDNEDGTTTW 468 >gi|15892034|ref|NP_359748.1| cysteinyl-tRNA synthetase [Rickettsia conorii str. Malish 7] gi|21264013|sp|Q92JF6|SYC_RICCN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15619152|gb|AAL02649.1| cysteinyl-tRNA synthetase [Rickettsia conorii str. Malish 7] Length = 459 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 198/477 (41%), Positives = 277/477 (58%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D +N++MYVCGPTVY HIGN+R +V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQANVKMYVCGPTVYYNPHIGNSRSGVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GEK V YVRNITD+DDKII+RA + I +T K T++F K+ L C+ P+ Sbjct: 61 FGEKAVKYVRNITDVDDKIIDRAAL------LGVTIDELTDKVTKEFHKNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G V Sbjct: 115 IEPKATKHIDVMIAIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVHVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ + Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMDKQIQ 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + + K + + Sbjct: 295 G------EVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHDFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ E + + I A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEERQLNASAII-TCANFIGLMNKTPHEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + + +LV +RL K K + AD IR QL + ILED PD T W+++ Sbjct: 408 VDELYVNELVNKRLEAKKQKNWLLADQIRNQLLEEKIILED--RPDG---TTIWRKE 459 >gi|157827987|ref|YP_001494229.1| cysteinyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932680|ref|YP_001649469.1| cysteinyl-tRNA synthetase [Rickettsia rickettsii str. Iowa] gi|187631627|sp|B0BW37|SYC_RICRO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631628|sp|A8GQP6|SYC_RICRS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157800468|gb|ABV75721.1| cysteinyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907767|gb|ABY72063.1| cysteinyl-tRNA synthetase [Rickettsia rickettsii str. Iowa] Length = 459 Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 199/477 (41%), Positives = 275/477 (57%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + ++YNTL R F D N++MYVCGPTVY HIGN+R +V+D+LYR++ Sbjct: 1 MQIQFRLYNTLSRTKEVFNPQDQDNVKMYVCGPTVYYNPHIGNSRSGVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GEK V YVRNITD+DDKII+RA + I +T K T++F K+ L C+ P+ Sbjct: 61 FGEKAVKYVRNITDVDDKIIDRAAL------LGVTIDELTDKVTKEFHKNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G V Sbjct: 115 IEPKATKHIDVMIAIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVHVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ + Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMDKQIQ 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + K + + Sbjct: 295 G------EVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHDFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIEVCKEH--LNKN 404 +L +D+NT A++ ++ A+ E + + I A+ +G+ H N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEERQLNASAII-TCANFIGLMNKSPHEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + I +LV +RL K K + AD IR QL + ILED PD T W+++ Sbjct: 408 VDELYINELVNKRLEAKKHKNWLLADQIRNQLLEEKIILED--QPDG---TTIWRKE 459 >gi|83859158|ref|ZP_00952679.1| cysteinyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] gi|83852605|gb|EAP90458.1| cysteinyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] Length = 462 Score = 346 bits (887), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 192/480 (40%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T RK +F ID + MYVCGPTVY AHIGN RP + FDVL+RLLR+ YG + Sbjct: 4 LTLYDTAARKKRDFVPIDADRVTMYVCGPTVYSEAHIGNFRPPVAFDVLFRLLRHIYGSE 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITD+DDKI + A I S+IT K + +D+ L PT +P Sbjct: 64 HVVYARNITDVDDKINKAAADAGVDI------SVITDKYAAIYREDSAALNITPPTLEPA 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+PQMI +I+ +I G AY A ++F S YG S R +D+ G RV + Sbjct: 118 ATAHMPQMIAMIEKLIADGFAYAAEGHVLFSVGSYDKYGKLSGRSLDDMIAGARVEVAPY 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+PADF+LWK S P EP WE+P+G GRPGWH+ECSAM LG+ DIH GG DL+FPH Sbjct: 178 KKDPADFVLWKPSKPGEPVWEAPFGDGRPGWHLECSAMIEATLGETIDIHAGGGDLVFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA AN W+HNGFL++ KMSKS GN I N+LL+ G Sbjct: 238 HENEVAQSVCAHAGAPLANYWLHNGFLSMASEKMSKSLGNVIKPNDLLQNGVKG------ 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVLSALYN 357 VIR A++ HYR P+D+ + L + +L + + + AV+ AL + Sbjct: 292 EVIRYALMTGHYRAPLDWNAKLLENTQRSMDRLYGVLRRLKGVNAADVAAPEAVMDALLD 351 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHI-----------------LGIEVCKEH 400 DLNT A+ AL ++A + K A + G++ E Sbjct: 352 DLNTPKALAALFEIAGRANKADSEDAQARAKGELLAAGRLLGLFDQDPDAWFGLDTVDEA 411 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 L I++L+ ERL + K F AD IR+ L +K + D+G W+ K Sbjct: 412 LRAE----IDQLLAERLAARQAKDFEKADAIREILNAKNVQV------DDGPEGATWRLK 461 >gi|157803268|ref|YP_001491817.1| cysteinyl-tRNA synthetase [Rickettsia canadensis str. McKiel] gi|187630858|sp|A8EXE9|SYC_RICCK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157784531|gb|ABV73032.1| cysteinyl-tRNA synthetase [Rickettsia canadensis str. McKiel] Length = 459 Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 197/461 (42%), Positives = 273/461 (59%), Gaps = 29/461 (6%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F+ D +N++MYVCGPTVYD HIGN+R V+D+LYR+L Sbjct: 1 MQIQFHLYNTLTRTKELFRPQDQANVKMYVCGPTVYDNPHIGNSRSAAVYDLLYRILIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +G V Y+RNITD+DDKII+RA + I+ +T K TQ+F + L C P+ Sbjct: 61 FGSTAVKYIRNITDVDDKIIDRAEL------LGSTINELTDKVTQEFHINMEYLGCKLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+ + F+ S PNY S R ++E G RV Sbjct: 115 IEPKATEHIDIMIEIIERLIAKKHAYIADKHVYFNVLSAPNYTELSNRNLEEMFEGVRVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+P DF+LWK + P E ++SPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKHPQDFVLWKPAKPNESANMNFDSPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+H+GFL + G KMSKS GNFIT+ +L++ K+ Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHHGFLTVNGEKMSKSLGNFITVRDLMD-KEI 293 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----IIDPAVL 352 G VIRL +L +HYR P+D+ + + +A+ L W + + II + Sbjct: 294 SGE-----VIRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIVNINLQKIDIIPNDFM 348 Query: 353 SALYNDLNTVSAIQALHKLARES-TKNHDLLPIFNAS-----AHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ AR T + FNAS A+ +G+ + E N Sbjct: 349 QSLLDDMNTPLAVKIINDYARGVFTSTTEEEKKFNASNLITCANFIGLMNKTPHEWFNSG 408 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ + I +LV +RL K K + AD IR QL + +LED Sbjct: 409 VNELYINELVNKRLEAKKQKNWLLADQIRNQLLEQQIVLED 449 >gi|68171834|ref|ZP_00545169.1| Cysteinyl-tRNA synthetase, class Ia [Ehrlichia chaffeensis str. Sapulpa] gi|67998744|gb|EAM85461.1| Cysteinyl-tRNA synthetase, class Ia [Ehrlichia chaffeensis str. Sapulpa] Length = 459 Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 274/480 (57%), Gaps = 49/480 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL F N+R+YVCGPTVYDFAHIGNAR ++++DVL+RLL+ Y + V Sbjct: 3 IYNTLTGIKEPFVPFSIDNVRVYVCGPTVYDFAHIGNARSVVIYDVLFRLLKLLYPK--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII A+ + SI AI I + F +D L CL PT++PRAT Sbjct: 61 TYVRNITDIDDKIINVAQNTNQSIYDVTAIYI------KAFHEDMKMLNCLEPTYEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++I +I LIQ ++ GHAY N + F+ S +YG S R I + G+R+ + KK Sbjct: 115 DNIDVIISLIQKLVDSGHAYVYNGSVFFNIESYSSYGQLSGRNISQLIYGSRIDIEVGKK 174 Query: 187 NPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS YL + FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATEIDNQLMSCWSSPWGLGRPGWHIECSAMSYRYLKENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + A W+HNGFL + KMSKS GN +T+ +LL + G Sbjct: 235 PHHENEIAQSCCAFPDSRYAKYWVHNGFLTVNDEKMSKSLGNVLTVRQLLNSGITG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLS 353 +IR +L THYR+P+D+ Q + A+ L++ +S + + V+ Sbjct: 291 --ELIRYVLLSTHYRKPLDWNSQMVASAQESLNRMYTALSSTNVDLSLDDSVELSSHVID 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFN------ASAHILGIEVCKEH------- 400 L +D+NT AI LH++ E K D++ + +A+ LGI +H Sbjct: 349 CLKDDINTPKAISMLHEMVTEINKTADMIEKISLTKTLIKTANFLGI---LQHSWQDWFK 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ N + I +L+ ER F AD IR+ L ++G +L DN T W +K Sbjct: 406 IDDN-NQEISQLIDERKKARANNDFKRADDIRQLLLNRGIVLS-----DNKDGTTHWYKK 459 >gi|78221284|ref|YP_383031.1| cysteinyl-tRNA synthetase [Geobacter metallireducens GS-15] gi|109894903|sp|Q39ZL8|SYC_GEOMG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78192539|gb|ABB30306.1| cysteinyl-tRNA synthetase [Geobacter metallireducens GS-15] Length = 485 Score = 345 bits (885), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 208/505 (41%), Positives = 269/505 (53%), Gaps = 71/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL EF + P + MYVCG TVYD HIG+AR +VFD++YR LR+ Sbjct: 3 LRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRH--AGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA QE +P N I+ + +F +D L PTHQP+ Sbjct: 61 DVTYVRNYTDVDDKIINRANQE--GVPYN----AISERFIAEFDRDMAALGLDLPTHQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +I +I G AY A+ ++ F Y S+R +DE + G R+ Sbjct: 115 ATEHIAEMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP WESPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A+ WIHNGF+N+ KMSKS GNF TI E+LE + A Sbjct: 235 HENEIAQSEAANG-KPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLE-------KYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------------STSKGII 347 V+R +L HYR PIDF+ Q L EAE L + T T + + Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEETDRELA 346 Query: 348 DPAVL------SALYNDLNTVSAIQALHKLARESTK----------NHDLLP----IFNA 387 + AV A+ +D NT A+ + L R + + N LL Sbjct: 347 EKAVTFPERFREAMDDDFNTAQALGFVFDLVRSANRVLGEGKGGGSNRALLAEARDRIRK 406 Query: 388 SAHILGI---------EVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQL 435 +LGI E K + I IE+L+ ER+ + F AD IR L Sbjct: 407 VGAVLGIFTSEPRAFAERLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRDSL 466 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 +KG +L D +P T WK K Sbjct: 467 AAKGIMLLD--SPQG----TTWKVK 485 >gi|88658290|ref|YP_507566.1| cysteinyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas] gi|109894900|sp|Q2GG67|SYC_EHRCR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|88599747|gb|ABD45216.1| cysteinyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas] Length = 459 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 274/480 (57%), Gaps = 49/480 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL F N+R+YVCGPTVYDFAHIGNAR ++++DVL+RLL+ Y + V Sbjct: 3 IYNTLTGIKEPFVPFSIDNVRVYVCGPTVYDFAHIGNARSVVIYDVLFRLLKLLYPK--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII A+ + SI AI I + F +D L CL PT++PRAT Sbjct: 61 TYVRNITDIDDKIINVAQNTNQSIYDVTAIYI------KAFHEDMRMLNCLEPTYEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++I +I LIQ ++ GHAY N + F+ S +YG S R I + G+R+ + KK Sbjct: 115 DNIDVIISLIQKLVDSGHAYVYNGSVFFNIESYSSYGQLSGRNISQLIYGSRIDIEVGKK 174 Query: 187 NPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS YL + FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATEIDNQLMSCWSSPWGLGRPGWHIECSAMSYRYLKENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + A W+HNGFL + KMSKS GN +T+ +LL + G Sbjct: 235 PHHENEIAQSCCAFPDSRYAKYWVHNGFLTVNDEKMSKSLGNVLTVRQLLNSGITG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLS 353 +IR +L THYR+P+D+ Q + A+ L++ +S + + V+ Sbjct: 291 --ELIRYVLLSTHYRKPLDWNSQMVASAQESLNRMYTALSSTNVDLSLDDSVELSSHVID 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFN------ASAHILGIEVCKEH------- 400 L +D+NT AI LH++ E K D++ + +A+ LGI +H Sbjct: 349 CLKDDINTPKAISMLHEMVTEINKTADMIEKISLTKTLIKTANFLGI---LQHSWQDWFK 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ N + I +L+ ER F AD IR+ L ++G +L DN T W +K Sbjct: 406 IDDN-NQEISQLIDERKKARANNDFKRADDIRQLLLNRGIVLS-----DNKDGTTHWYKK 459 >gi|157964147|ref|YP_001498971.1| cysteinyl-tRNA synthetase [Rickettsia massiliae MTU5] gi|187630859|sp|A8F0I8|SYC_RICM5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157843923|gb|ABV84424.1| Cysteinyl-tRNA synthetase [Rickettsia massiliae MTU5] Length = 459 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 198/477 (41%), Positives = 276/477 (57%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D +N++MYVCGPTVYD HIGN R +V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQANVKMYVCGPTVYDNPHIGNGRSGVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GEK V YVRNIT++DDKII+RA E + I++ +T K T++F K+ L C+ P+ Sbjct: 61 FGEKTVKYVRNITNVDDKIIDRA--ELLGVTIDE----LTDKVTKEFHKNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT H MI +I+ +I HAY +N + FD S PNY S R ++E G V Sbjct: 115 IEPKATKHTDVMIAIIERLIAKEHAYVVDNHVYFDVLSAPNYTELSNRSLEEMFEGVHVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFITI +L++ + Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHNGFLTVNGEKMSKSLGNFITIRDLMDKQIQ 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLS 353 G V+RL +L +HYR P+D+ + + +A+ L W + K + + Sbjct: 295 G------EVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHDFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ E + + I A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEERQLNASAII-TCANFIGLMNKTPHEWFNSG 407 Query: 405 IS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + I + V +RL K K + AD IR QL + ILED PD T W+++ Sbjct: 408 VDELYINEFVNKRLEAKKQKNWLLADQIRNQLLEEKIILED--QPDG---TTIWRKE 459 >gi|295094035|emb|CBK83126.1| cysteinyl-tRNA synthetase [Coprococcus sp. ART55/1] Length = 463 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 206/489 (42%), Positives = 267/489 (54%), Gaps = 61/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL R+ EF I+ + +YVCGPTVYD+ HIGNARPMIVFD L R L Y + Sbjct: 1 MKILNTLTRRKEEFVPINEGKVGIYVCGPTVYDYIHIGNARPMIVFDTLRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E DA S+I+ + + KD L T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANEEGV-----DA-SVISERYIAEVKKDMAALNVREATTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT IP MI +++ +I G+AYE N + F T +YG S++ ID+ + G R V Sbjct: 113 ATEEIPDMIEMVKTLIEKGYAYEVNGTVYFRTRKFKDYGKLSKKNIDDLRSGNRDLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W SPWG GRPGWH+ECS MS Y+G V DIH GG DL+ Sbjct: 173 VDEKEDPLDFVLWKPKKEGEPSWPSPWGDGRPGWHLECSVMSKKYIGDVIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFL + KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGTE-FARYWMHNGFLKINNEKMSKSLGNFFTVREIAE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAE--------ILLSKWPQTSTSKGIIDPAVL- 352 +P VIR ML HYR P++F+ L EA + + S ++G +D AV Sbjct: 285 YPLQVIRFFMLSAHYRSPLNFSAD-LVEASKNGLERILTAVDRLKSISGTEGEVDKAVAD 343 Query: 353 ----------SALYNDLNTVSAIQALHKLAR--------ESTKN--HDLLPIFNASAHIL 392 +A+ +DLNT AI + +L + ESTK +L IL Sbjct: 344 EMDAFVKKYEAAMDDDLNTADAISVIFELVKYANVNVTEESTKATVELVLNTVTKLCDIL 403 Query: 393 GI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 GI E KE L+ + IE L++ER K K F+ AD IR QL G ILED + Sbjct: 404 GIITEKKKEILDSD----IEALIEERQAARKAKNFARADEIRDQLSDMGIILEDTREG-- 457 Query: 451 GQRMTRWKQ 459 +WK+ Sbjct: 458 ----VKWKR 462 >gi|317497616|ref|ZP_07955934.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895175|gb|EFV17339.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 467 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 197/475 (41%), Positives = 260/475 (54%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + P + MYVCGPTVY++ HIGNARPMI+FD + R Y E Sbjct: 1 MKIYNTLTRQKEEFVPVHPGKVGMYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + + I + ++ +D L THQPR Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVTA------TEIAERYIKECKQDMEALNIKPATHQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I GHAYE + + F T S +YG S++ ID+ + G R V Sbjct: 113 ATEEIGGMIKMIQTLIKKGHAYEVDGTVYFKTRSFKDYGKLSKKNIDDLEAGHREIKVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + KK+P DF+LWK E W+SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKKDPLDFVLWKPKKEGEIAWDSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + EK AN W+HNGFLN+ +KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEACNG-EKFANYWMHNGFLNINNKKMSKSAGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL--------------SKWPQTSTSK--- 344 +P VIR ML HYR P++F+ + A+ L +K S SK Sbjct: 285 YPLQVIRFFMLSAHYRTPLNFSDTLVESAKTGLDRILTAIDLCREMAAKEETGSLSKEET 344 Query: 345 ------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASA 389 ++ A+ +D NT A+ A+ ++ RES +L + Sbjct: 345 EHFANIEVLVKKFEDAMEDDFNTADAVSAIFEIVRESNSTVKDFSADYAKKILKVLEDLC 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGIE KE + I KL++ER K K F+ AD IR QL +G +L+D Sbjct: 405 SVLGIETTKEEEILDEEIE--KLIEERQAARKNKDFARADEIRDQLLEQGIVLKD 457 >gi|188991323|ref|YP_001903333.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. B100] gi|167733083|emb|CAP51281.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 479 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 195/498 (39%), Positives = 264/498 (53%), Gaps = 61/498 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + +PI S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ--GVPI----STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I HAY A ++F +S +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIASEHAYAAEGHVLFAVASFADYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K+NP DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRNPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGAVFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-------VQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 P +RLA+L HYR+P+D++ RL LL++ + I + Sbjct: 288 --PPEALRLALLSAHYRQPLDWSDGLIETETNRLDGLYKLLNRLKAFDEVQASIPDEIED 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKN-HDLLPIFNASAHILG-IEVCKE------------ 399 AL DLNT A++ L K A + + + P + G I+ K+ Sbjct: 346 ALNEDLNTPLALRVLAKFADRARRALKEFAPPGGPDSEQTGSIDAVKKAKAELLGAGLAL 405 Query: 400 -------------------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 + I LV ER K K F+ AD IR+QL +G Sbjct: 406 GLLQQDPAAWLSRGNKAGTSTDAGDDARIAALVDERSAAKKAKDFARADAIRQQLADEGI 465 Query: 441 ILEDYKNPDNGQRMTRWK 458 +LED + RWK Sbjct: 466 VLEDTA------QGVRWK 477 >gi|154253106|ref|YP_001413930.1| cysteinyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] gi|187629837|sp|A7HWJ0|SYC_PARL1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154157056|gb|ABS64273.1| cysteinyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 198/480 (41%), Positives = 270/480 (56%), Gaps = 44/480 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K K+ +YNTL R+ F+ +P + MYVCGPTVY+ +HIGNARP +VFDVL RLLR Y Sbjct: 7 KLKLSLYNTLTRQKEIFEPAEPDRVTMYVCGPTVYNRSHIGNARPAVVFDVLARLLRRLY 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V Y RNITDI+DKII A++ I S+IT K + + +D L LAP Sbjct: 67 RH--VVYARNITDIEDKIIAAAKEAGVDI------SVITEKYARIYREDMGALGVLAPDI 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +P+AT I +MI +++ +I G+AY A ++F+ S YG S R D+ G RV Sbjct: 119 EPKATESIAEMISMMERLIASGNAYAAEGHVLFNVPSFAEYGRLSGRDRDDMIAGARVEV 178 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +KK+PADF+LWK STP +PGW+SPWGRGRPGWHIECSAM +LG+ DIHGGG+DL Sbjct: 179 APYKKDPADFVLWKPSTPEQPGWDSPWGRGRPGWHIECSAMIEKHLGETIDIHGGGIDLQ 238 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE+AQS CA A W+HNGF+N+ KMSKS GN + ++ELL Sbjct: 239 FPHHENELAQSSCAHGHTPLARFWLHNGFVNMGSEKMSKSLGNVLLVHELLAQA------ 292 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVL 352 P +RLA+L HYR+P+D++ + L +A+ +L + + + A + Sbjct: 293 -PGEAVRLALLNAHYRQPLDWSDEGLAQAKRMLDRLYGALRALSDVKAEPTNDAAPDAFM 351 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI-EVCKEHLNKNI 405 AL +DLNT A+ L LA+ + D L + +LG+ E+ E Sbjct: 352 EALADDLNTPKALAVLFDLAKRANTETDPGTKAQLKAALIGAGRLLGVLEMDPEAWFAGA 411 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 A +E+L+ R K K F+ AD IR L G +ED G + T W+ Sbjct: 412 GAASHIDGEEVERLIAARNAARKAKDFAEADRIRGALAEMGVAIED------GPQGTSWR 465 >gi|222475063|ref|YP_002563478.1| cysteinyl-tRNA synthetase (cysS) [Anaplasma marginale str. Florida] gi|255003041|ref|ZP_05278005.1| cysteinyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico] gi|222419199|gb|ACM49222.1| cysteinyl-tRNA synthetase (cysS) [Anaplasma marginale str. Florida] Length = 466 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 199/484 (41%), Positives = 279/484 (57%), Gaps = 47/484 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL F + + +YVCGPTVYD AHIGNAR ++V+DVL+RLL+ Y E Sbjct: 1 MRLHDTLHAAKRVFSPKNSERVGVYVCGPTVYDLAHIGNARSVVVYDVLFRLLKALYPE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII A E N +I+ +T+ T+ F +D L CL+PT +PR Sbjct: 60 -VVYVRNITDVDDKIINAAESE------NKSIAELTAHYTKLFHEDIEALNCLSPTFEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M+++I +I GHAY + F S +YG+ S RK+ + G+RV Sbjct: 113 ATEEIETMLHIIGRLIQAGHAYVRGGTVYFSVESYKHYGALSGRKLGDMISGSRVEVVAE 172 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK +T ++ W SPWG GRPGWH+ECSAMS YLG FDIHGGG DL Sbjct: 173 KLHPGDFVLWKPATDLDMKLGACWPSPWGVGRPGWHVECSAMSYRYLGDSFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETKKFGG 299 +FPHHENEI+QSCCA + A W+HNGFL + G KMSKS GN IT+ LL G Sbjct: 233 MFPHHENEISQSCCAFPGSEYARYWVHNGFLTVNGGEKMSKSLGNVITVRGLLSNGVDG- 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIID---- 348 VIR L THYR+P+D+ + + +A+ L+K + S G+ D Sbjct: 292 -----EVIRYVFLSTHYRKPLDWGDKAVLDAKEALNKIYRSCEGFSAQLLSTGLEDVGVH 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEH 400 AV+++L +D+NT +AI ALH+L +E K ++ L + N SA ++G+ + Sbjct: 347 DAVMASLRDDMNTPAAIAALHELVKEINKTNNAGEKLRLARVLNKSAMLMGMFRNFPERK 406 Query: 401 LNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L + I +L+++R+ K F AD IR+ L + G + D K+ TR Sbjct: 407 LLDMRGLVDEGEINRLIEKRVEAKKCGDFKLADEIRESLSNMGIGISDGKDGS-----TR 461 Query: 457 WKQK 460 W +K Sbjct: 462 WHRK 465 >gi|255004163|ref|ZP_05278964.1| cysteinyl-tRNA synthetase [Anaplasma marginale str. Virginia] Length = 466 Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 199/484 (41%), Positives = 279/484 (57%), Gaps = 47/484 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL F + + +YVCGPTVYD AHIGNAR ++V+DVL+RLL+ Y E Sbjct: 1 MRLHDTLHAAKRVFSPKNSGCVGVYVCGPTVYDLAHIGNARSVVVYDVLFRLLKALYPE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII A E N +I+ +T+ T+ F +D L CL+PT +PR Sbjct: 60 -VIYVRNITDVDDKIINAAESE------NKSIAELTAHYTKLFHEDIEALNCLSPTFEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M+++I +I GHAY + F S +YG+ S RK+ + G+RV Sbjct: 113 ATEEIETMLHIIGRLIQAGHAYVRGGTVYFSVESYKHYGALSGRKLGDMISGSRVEVVAE 172 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK +T ++ W SPWG GRPGWH+ECSAMS YLG FDIHGGG DL Sbjct: 173 KLHPGDFVLWKPATDLDMKLGACWPSPWGVGRPGWHVECSAMSYRYLGDSFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETKKFGG 299 +FPHHENEI+QSCCA + A W+HNGFL + G KMSKS GN IT+ LL G Sbjct: 233 MFPHHENEISQSCCAFPGSEYARYWVHNGFLTVNGGEKMSKSLGNVITVRGLLSNGVDG- 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIID---- 348 VIR L THYR+P+D+ + + +A+ L+K + S G+ D Sbjct: 292 -----EVIRYVFLSTHYRKPLDWGDKAVLDAKEALNKIYRSCEGFSAQLLSTGLEDVGVH 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEH 400 AV+++L +D+NT +AI ALH+L +E K ++ L + N SA ++G+ + Sbjct: 347 DAVMASLRDDMNTPAAIAALHELVKEINKTNNAGEKLRLARVLNKSAMLMGMFRNFPERK 406 Query: 401 LNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L + I +L+++R+ K F AD IR+ L + G + D K+ TR Sbjct: 407 LLDMRGLVDEGEINRLIEKRVEAKKCGDFKLADEIRESLSNMGIGISDGKDGS-----TR 461 Query: 457 WKQK 460 W +K Sbjct: 462 WHRK 465 >gi|167765721|ref|ZP_02437774.1| hypothetical protein CLOSS21_00209 [Clostridium sp. SS2/1] gi|167712594|gb|EDS23173.1| hypothetical protein CLOSS21_00209 [Clostridium sp. SS2/1] gi|291559857|emb|CBL38657.1| cysteinyl-tRNA synthetase [butyrate-producing bacterium SSC/2] Length = 467 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 196/475 (41%), Positives = 260/475 (54%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + P + MYVCGPTVY++ HIGNARPMI+FD + R Y E Sbjct: 1 MKIYNTLTRQKEEFVPVHPGKVGMYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + + I + ++ +D L THQPR Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVTA------TEIAERYIKECKQDMEALNIKPATHQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I GHAYE + + F T S +YG S++ ID+ + G R V Sbjct: 113 ATEEIGGMIKMIQTLIKKGHAYEVDGTVYFKTRSFKDYGKLSKKNIDDLEAGHREIKVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK E W+SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKEDPLDFVLWKPKKEGEIAWDSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + EK AN W+HNGFLN+ +KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEACNG-EKFANYWMHNGFLNINNKKMSKSAGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL--------------SKWPQTSTSK--- 344 +P VIR ML HYR P++F+ + A+ L +K S SK Sbjct: 285 YPLQVIRFFMLSAHYRTPLNFSDTLVESAKTGLDRILTAIDLCREMSAKEETGSLSKEET 344 Query: 345 ------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASA 389 ++ A+ +D NT A+ A+ ++ RES +L + Sbjct: 345 EHFANIEVLVKKFEDAMEDDFNTADAVSAIFEIVRESNSTVKDFSADYAKKILKVLEDLC 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGIE KE + I KL++ER K K F+ AD IR QL +G +L+D Sbjct: 405 SVLGIETTKEEEILDEEIE--KLIEERQAARKNKDFARADEIRDQLLEQGIVLKD 457 >gi|254994905|ref|ZP_05277095.1| cysteinyl-tRNA synthetase [Anaplasma marginale str. Mississippi] Length = 466 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 199/484 (41%), Positives = 279/484 (57%), Gaps = 47/484 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL F + + +YVCGPTVYD AHIGNAR ++V+DVL+RLL+ Y E Sbjct: 1 MRLHDTLHAAKRVFSPKNSERVGVYVCGPTVYDLAHIGNARSVVVYDVLFRLLKALYPE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII A E N +I+ +T+ T+ F +D L CL+PT +PR Sbjct: 60 -VIYVRNITDVDDKIINAAESE------NKSIAELTAHYTKLFHEDIEALNCLSPTFEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M+++I +I GHAY + F S +YG+ S RK+ + G+RV Sbjct: 113 ATEEIETMLHIIGRLIQAGHAYVRGGTVYFSVESYKHYGALSGRKLGDMISGSRVEVVAE 172 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK +T ++ W SPWG GRPGWH+ECSAMS YLG FDIHGGG DL Sbjct: 173 KLHPGDFVLWKPATDLDMKLGACWPSPWGVGRPGWHVECSAMSYRYLGDSFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETKKFGG 299 +FPHHENEI+QSCCA + A W+HNGFL + G KMSKS GN IT+ LL G Sbjct: 233 MFPHHENEISQSCCAFPGSEYARYWVHNGFLTVNGGEKMSKSLGNVITVRGLLSNGVDG- 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIID---- 348 VIR L THYR+P+D+ + + +A+ L+K + S G+ D Sbjct: 292 -----EVIRYVFLSTHYRKPLDWGDKAVLDAKEALNKIYRSCEGFSAQLLSTGLEDVGVH 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEH 400 AV+++L +D+NT +AI ALH+L +E K ++ L + N SA ++G+ + Sbjct: 347 DAVMASLRDDMNTPAAIAALHELVKEINKTNNAGEKLRLARVLNKSAMLMGMFRNFPERK 406 Query: 401 LNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L + I +L+++R+ K F AD IR+ L + G + D K+ TR Sbjct: 407 LLDMRGLVDEGEINRLIEKRVEAKKCGDFKLADEIRESLSNMGIGISDGKDGS-----TR 461 Query: 457 WKQK 460 W +K Sbjct: 462 WHRK 465 >gi|254420661|ref|ZP_05034385.1| cysteinyl-tRNA synthetase [Brevundimonas sp. BAL3] gi|196186838|gb|EDX81814.1| cysteinyl-tRNA synthetase [Brevundimonas sp. BAL3] Length = 469 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 191/485 (39%), Positives = 276/485 (56%), Gaps = 48/485 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I++TL R+ F+ DP+ + +YVCGPTVYD+AHIGNARP +VFDVL RLLR YG Sbjct: 3 LHIHDTLHREKRLFEPRDPNRVTLYVCGPTVYDYAHIGNARPPVVFDVLVRLLRRTYGAD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI ++A +E +PI + +T++ ++ D L P P Sbjct: 63 HVIYARNVTDVDDKINQKAARE--GVPIGE----VTARYEAAYLADMGLLNVSPPDLAPH 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++IP ++ IQ I+ G AY A ++FD SS P+YG+ S R +D+ G RV + Sbjct: 117 VTDYIPAIVAQIQAIVDAGCAYAAEGHVLFDVSSYPSYGALSGRNLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM LG DIHGGG+DL+FPH Sbjct: 177 KKNPHDFVLWKPSKPDEPSWPSPWGEGRPGWHIECSAMIEQALGLPIDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCA------DRI-EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 HENEIAQ CA D+ ++ A W+HNGFL ++ KMSKS GN + +++L++ Sbjct: 237 HENEIAQGVCAHGHAQGDKAHDEYARYWMHNGFLTVDAEKMSKSVGNVLLLHDLVQAM-- 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGI----IDPAV- 351 P V+R A+L HYR+P+D+ L +++ L + + S G+ +DP Sbjct: 295 -----PGEVVRWALLSAHYRQPLDWNQGLLDQSKKSLDRLYGALHRSSGVEVLDLDPPAD 349 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKN---HDLLPI------FNASAHILGI------E 395 + ++ +DLNT A+ +L L+ E + DL + A A ILG+ Sbjct: 350 FMKSIEDDLNTPGAMASLFALSSEIERGMTAGDLDAVAQARARLMACASILGVLQSDPAA 409 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++ + I +E L+++R K + AD IR +L + ++ D PD Sbjct: 410 WLEGDVSDALRIEVEALLEQRAAARAAKDWPEADRIRDRLNALNVVVMD--GPDGAT--- 464 Query: 456 RWKQK 460 W+ K Sbjct: 465 -WRMK 468 >gi|302382798|ref|YP_003818621.1| cysteinyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302193426|gb|ADL00998.1| cysteinyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 469 Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 262/467 (56%), Gaps = 42/467 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +++TL R+ F DP + +YVCGPTVYDFAHIGNARP +VFDVL RLLR YG + V Sbjct: 5 LHDTLHREKRAFVPRDPERVTLYVCGPTVYDFAHIGNARPPVVFDVLVRLLRREYGAESV 64 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y RN+TD+DDKI +A +E +PI D +T++ ++ D + L P P T Sbjct: 65 IYARNVTDVDDKINAKAHRE--GVPIGD----VTARYEAAYLADMSALNVTPPDIAPHVT 118 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 H+ ++ I I+ G AY A ++FD SS P+YG+ S R +D+ G RV +KK Sbjct: 119 GHMDAIVRQIGEIMDQGCAYAAEGHVLFDVSSYPSYGALSGRNLDDMIAGARVEVAPYKK 178 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF+LWK S P EP W SPWG GRPGWHIECSAM LG DIHGGG+DL+FPHHE Sbjct: 179 NPHDFVLWKPSKPDEPSWPSPWGDGRPGWHIECSAMIEQTLGLPIDIHGGGIDLVFPHHE 238 Query: 247 NEIAQSCC-------ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 NEIAQ C AD + + W+HNGFL ++ KMSKS GN + +++L++T Sbjct: 239 NEIAQGVCAHGHAHDADSHDAYSRYWMHNGFLTVDAEKMSKSVGNVLLLHDLVQTI---- 294 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI-------LLSKWPQTSTSKGIIDPAVL 352 P V+R A+L HYR+P+D+ L ++ L + + + P L Sbjct: 295 ---PGEVVRWALLSAHYRQPLDWNQSLLDQSRKNLDRLYGALRRAEAVAPLGDMPSPEFL 351 Query: 353 SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFN----ASAHILGIEVC------ 397 +A+ +DLNT A+ L L+ E + +H + I AS+ ILG+ + Sbjct: 352 TAISDDLNTPGAMATLFALSSEIERAMTAGDHHAVGIAKAELLASSRILGVLLSTPDQWF 411 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + +E L+ ER+ K ++ AD IR +L + ++ D Sbjct: 412 EGGADDALKAEVEGLLAERVTARAEKNWAEADRIRDRLTALNVVVMD 458 >gi|119476779|ref|ZP_01617089.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] gi|119450035|gb|EAW31271.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] Length = 455 Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 185/458 (40%), Positives = 255/458 (55%), Gaps = 37/458 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ F+ I P + MYVCGPTVY+ HIGNARP++VFD LYR+L+ Y V Sbjct: 5 VYNSYTGTKEAFEPIKPDTVTMYVCGPTVYNRVHIGNARPVVVFDTLYRVLKTLY--SSV 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y RNITDIDDKI+ A+ + I+ I+S+ + D L L P P AT Sbjct: 63 IYARNITDIDDKIMAAAKAG------GETIAAISSRYATAYFDDMAELNNLPPDIIPYAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +H+ +M+ +IQ +I GHAYEA + I+FD S+ YG ++R +++ G RV +KK Sbjct: 117 DHVGEMVAMIQTLIDKGHAYEAESHILFDVKSMSGYGKLAKRSLEDMLAGARVDVADYKK 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 DF+LWK ST EPGW+SPWGRGRPGWH+ECSAM +LG DIHGGG+DL FPHHE Sbjct: 177 YAGDFVLWKPSTDEEPGWDSPWGRGRPGWHLECSAMIEKHLGNTIDIHGGGIDLQFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NE+AQS CA E W+HN ++N++G KMSKS GNF + +LL+ +P V Sbjct: 237 NELAQSTCAHDGEPFVRYWMHNAYINIDGEKMSKSLGNFRMVKDLLD-------HYPGEV 289 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKGII---DPAVLSALYN 357 +R ++L HYR ++F+ L A+ L + +T+ +I D V AL + Sbjct: 290 LRFSILSAHYRSELNFSADALDSAQKTLDNLYGVLRSVETTDVDPVIELSDSKVYKALLD 349 Query: 358 DLNTVSAIQALHKLAR-----ESTKNHDLLPIFNASAHILGI--------EVCKEHLNKN 404 DLNT AI+ +H LA+ L SA ++GI + K Sbjct: 350 DLNTPIAIREIHALAKAMKSASGETQQRLKSELLKSAALMGILQQDPDEWLMVKAGEGDL 409 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 I +E V E + K + AD IR +L+ +G IL Sbjct: 410 SDIEVENQVVEMQQARQQKDYKHADDIRDRLQQRGIIL 447 >gi|306842058|ref|ZP_07474730.1| cysteinyl-tRNA synthetase [Brucella sp. BO2] gi|306287808|gb|EFM59231.1| cysteinyl-tRNA synthetase [Brucella sp. BO2] Length = 452 Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 264/453 (58%), Gaps = 52/453 (11%) Query: 52 VLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 +L+RLLR+ YG + VTY RNITD+DDKI RA +++P +P N+AI +T QF D Sbjct: 1 MLFRLLRHVYGAQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADV 60 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFS 166 L L PT QPRAT H+ +M +I ++ G AY A + ++F S++ P YG+ + Sbjct: 61 AALGNLQPTVQPRATEHMDEMRAMIDRLVQRGVAYVAEDHVLFSPSAMNARKGPRYGALA 120 Query: 167 RRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMS 223 RR +DE G RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS Sbjct: 121 RRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMS 180 Query: 224 SHYL-----GKV---------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 L G + FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNG Sbjct: 181 MAKLLEPFGGGLKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNG 240 Query: 270 FLNLEGRKMSKSNGNFITINELL-----ETKKFGGRS----WPAPVIRLAMLMTHYREPI 320 FL +EG+KMSKS GNFITI ++L + ++G + W RL+ML THYREPI Sbjct: 241 FLQVEGQKMSKSLGNFITIRDVLNDGLPQLGEWGDNTVRDRWVGLAARLSMLQTHYREPI 300 Query: 321 DFTVQRLTEAEILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLAR 373 ++T QRL E+ L +W +G P AV +AL +DLN+ +AI AL R Sbjct: 301 NWTAQRLAESADELHRWYGLLRDEGFGAPEKLSQAGAVAAALCDDLNSWAAITAL----R 356 Query: 374 ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKK 424 ++ K+ D+ + A ++G+ ++ I AI + ERL + K Sbjct: 357 QAFKSRDVAALGEGMA-LMGLFDPYFVTASDVPIFARADVDASAIAARIAERLNFIDAKN 415 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++ AD IR +L +G L+D K+P G+R+T W Sbjct: 416 WAEADRIRDELLQEGVQLKDGKDPATGERITTW 448 >gi|71900828|ref|ZP_00682946.1| Cysteinyl-tRNA synthetase, class Ia [Xylella fastidiosa Ann-1] gi|71729398|gb|EAO31511.1| Cysteinyl-tRNA synthetase, class Ia [Xylella fastidiosa Ann-1] Length = 467 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 267/473 (56%), Gaps = 51/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +YNTL R++ F+ +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR YG Sbjct: 2 SLHLYNTLHRRVEPFEPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+++ +PI S IT + + +D +L P +P Sbjct: 61 -ALRYARNITDVDDKINTAAQEQ--GVPI----SAITERFCAAYREDMKKLGVEPPDIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+PQ+I +I+ +I HAY A ++F +S +YG SRR +E G RV Sbjct: 114 EATAHMPQIIAMIEQLIERQHAYVAMEHVLFAVNSFADYGQLSRRDPEEMLAGARVEIAP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P+DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FP Sbjct: 174 YKRDPSDFVLWKPSSYQLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A +W+HNG LN EG KMSKS GN T++EL+ P Sbjct: 234 HHENEIAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNIETVHELVAKH-------P 286 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R A+L HYR+P+D+ T+ RL L+ +P ++ II + + Sbjct: 287 PEALRYALLSAHYRKPLDWSEALIAQSVRTLNRLYGTLRDLAAYP----ARAIIPGNIEA 342 Query: 354 ALYNDLNTVSAIQALHKLARES------TKNHDLLPIFNASAHILGIEVC---------- 397 AL +DLNT A+ L LA E+ T +H+ + A + + Sbjct: 343 ALDDDLNTPQALAELATLANEARIQLADTTHHEAAEVTTALTRLKAKLLGAGLALGLLQQ 402 Query: 398 ------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++ I+ L+ R + + F AD IR QL ++G +LED Sbjct: 403 TPEAWFSQGTNESDETHIQALIDARSAAKQARDFVRADAIRAQLAAEGIVLED 455 >gi|182680844|ref|YP_001829004.1| cysteinyl-tRNA synthetase [Xylella fastidiosa M23] gi|61252101|sp|Q87EL7|SYC_XYLFT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|182630954|gb|ACB91730.1| cysteinyl-tRNA synthetase [Xylella fastidiosa M23] Length = 467 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 266/473 (56%), Gaps = 51/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +YNTL R++ F+ +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR YG Sbjct: 2 SLHLYNTLHRRVEPFEPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+++ +PI S IT + + +D +L P +P Sbjct: 61 -ALRYARNITDVDDKINTAAQEQ--GVPI----SAITERFCAAYREDMKKLGVEPPDIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+PQ+I +I+ +I HAY A ++F +S +YG SRR +E G RV Sbjct: 114 EATAHMPQIIAMIEQLIERQHAYVAMEHVLFAVNSFADYGQLSRRDTEEMLAGARVEIAP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P+DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FP Sbjct: 174 YKRDPSDFVLWKPSSDQLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A +W+HNG LN EG KMSKS GN T++EL+ P Sbjct: 234 HHENEIAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNIETVHELVAKH-------P 286 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R A+L HYR+P+D+ T+ RL L+ +P ++ II + + Sbjct: 287 PEALRYALLSAHYRKPLDWSEALIAQSVRTLNRLYGTLRDLAAYP----ARAIIPGNIEA 342 Query: 354 ALYNDLNTVSAIQALHKLARES------TKNHDLLPIFNASAHILGIEVC---------- 397 AL +DLNT A+ L LA E+ T +H + A + + Sbjct: 343 ALDDDLNTPQALAELATLANEARIQLADTTHHAAAEVTTALTRLKAKLLGAGLALGLLQQ 402 Query: 398 ------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++ I+ L+ R + + F AD IR QL ++G +LED Sbjct: 403 TPEAWFSQGTNESDETHIQALIDARGAAKQARDFVRADAIRAQLAAEGIVLED 455 >gi|28198209|ref|NP_778523.1| cysteinyl-tRNA synthetase [Xylella fastidiosa Temecula1] gi|28056279|gb|AAO28172.1| cysteinyl-tRNA synthetase [Xylella fastidiosa Temecula1] Length = 474 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 266/473 (56%), Gaps = 51/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +YNTL R++ F+ +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR YG Sbjct: 9 SLHLYNTLHRRVEPFEPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG- 67 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+++ +PI S IT + + +D +L P +P Sbjct: 68 -ALRYARNITDVDDKINTAAQEQ--GVPI----SAITERFCAAYREDMKKLGVEPPDIEP 120 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+PQ+I +I+ +I HAY A ++F +S +YG SRR +E G RV Sbjct: 121 EATAHMPQIIAMIEQLIERQHAYVAMEHVLFAVNSFADYGQLSRRDTEEMLAGARVEIAP 180 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P+DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FP Sbjct: 181 YKRDPSDFVLWKPSSDQLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFP 240 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A +W+HNG LN EG KMSKS GN T++EL+ P Sbjct: 241 HHENEIAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNIETVHELVAKH-------P 293 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R A+L HYR+P+D+ T+ RL L+ +P ++ II + + Sbjct: 294 PEALRYALLSAHYRKPLDWSEALIAQSVRTLNRLYGTLRDLAAYP----ARAIIPGNIEA 349 Query: 354 ALYNDLNTVSAIQALHKLARES------TKNHDLLPIFNASAHILGIEVC---------- 397 AL +DLNT A+ L LA E+ T +H + A + + Sbjct: 350 ALDDDLNTPQALAELATLANEARIQLADTTHHAAAEVTTALTRLKAKLLGAGLALGLLQQ 409 Query: 398 ------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++ I+ L+ R + + F AD IR QL ++G +LED Sbjct: 410 TPEAWFSQGTNESDETHIQALIDARGAAKQARDFVRADAIRAQLAAEGIVLED 462 >gi|253995884|ref|YP_003047948.1| cysteinyl-tRNA synthetase [Methylotenera mobilis JLW8] gi|253982563|gb|ACT47421.1| cysteinyl-tRNA synthetase [Methylotenera mobilis JLW8] Length = 466 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 191/470 (40%), Positives = 267/470 (56%), Gaps = 45/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 LKIYNTLAREKQTFTPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVSRWLRA--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII+RA + N+ I+ +T + +D+ +L L P +P+ Sbjct: 60 NVTYVRNVTDIDDKIIKRANEN------NETIAQLTQRFIDAMDEDSAKLGVLRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M+ +I +I G AY AN ++ + SS YG S + +++ + G RV Sbjct: 114 ATEFVDGMLSMIAALIDKGFAYPAANGDVFYSVSSFQGYGKLSGKSLEDLRAGERVEVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP WESPWG+GRPGWHIECSAMSSH+LG+ FDIHGGG DL FP Sbjct: 174 FKKDPMDFVLWKAAKPGEPSWESPWGKGRPGWHIECSAMSSHHLGQHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIE----KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HHENEIAQS A + + N W+HNGF+ ++ KMSKS GNF TI +LE Sbjct: 234 HHENEIAQSEAAHSHDGKPCQMVNYWMHNGFVRVDDEKMSKSLGNFFTIRTVLE------ 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-------- 351 + A VIR +L HYR P++++ Q L +A++ L++ + D A+ Sbjct: 288 -QYDAEVIRFFILRAHYRSPLNYSDQHLNDAKLALTRLYTALRGVDVSDDAIDWQHPYAA 346 Query: 352 --LSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCK--EHLNKNI 405 A+ +D NT A+ L LA E TK+ + + A +LG+ K E L Sbjct: 347 RFKLAMDDDFNTPEAMAVLFDLANEVNKTKSTEAAGLLKGLASVLGLLSRKSDEFLQAKT 406 Query: 406 -----------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ ++ +RL + K F+ AD IRK+L G ILED Sbjct: 407 NANGAANDGAAELDVDAMIVKRLEAKQAKNFAEADRIRKELAEAGIILED 456 >gi|56416697|ref|YP_153771.1| cysteinyl-tRNA synthetase [Anaplasma marginale str. St. Maries] gi|61216132|sp|Q5PB14|SYC_ANAMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56387929|gb|AAV86516.1| cysteinyl-tRNA synthetase [Anaplasma marginale str. St. Maries] Length = 466 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 198/484 (40%), Positives = 278/484 (57%), Gaps = 47/484 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL F + + +YVCGPTVYD AHIGNAR ++V+DVL+RLL+ Y E Sbjct: 1 MRLHDTLHAAKRVFSPKNSERVGVYVCGPTVYDLAHIGNARSVVVYDVLFRLLKALYPE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII E N +I+ +T+ T+ F +D L CL+PT +PR Sbjct: 60 -VIYVRNITDVDDKIINATESE------NKSIAELTAHYTKLFHEDIEALNCLSPTFEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I M+++I +I GHAY + F S +YG+ S RK+ + G+RV Sbjct: 113 ATEEIETMLHIIGRLIQAGHAYVRGGTVYFSVESYKHYGALSGRKLGDMISGSRVEVVAE 172 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK +T ++ W SPWG GRPGWH+ECSAMS YLG FDIHGGG DL Sbjct: 173 KLHPGDFVLWKPATDLDMKLGACWPSPWGVGRPGWHVECSAMSYRYLGDSFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETKKFGG 299 +FPHHENEI+QSCCA + A W+HNGFL + G KMSKS GN IT+ LL G Sbjct: 233 MFPHHENEISQSCCAFPGSEYARYWVHNGFLTVNGGEKMSKSLGNVITVRGLLSNGVDG- 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIID---- 348 VIR L THYR+P+D+ + + +A+ L+K + S G+ D Sbjct: 292 -----EVIRYVFLSTHYRKPLDWGDKAVLDAKEALNKIYRSCEGFSAQLLSTGLEDVGVH 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI--EVCKEH 400 AV+++L +D+NT +AI ALH+L +E K ++ L + N SA ++G+ + Sbjct: 347 DAVMASLRDDMNTPAAIAALHELVKEINKTNNAGEKLRLARVLNKSAMLMGMFRNFPERK 406 Query: 401 LNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L + I +L+++R+ K F AD IR+ L + G + D K+ TR Sbjct: 407 LLDMRGLVDEGEINRLIEKRVEAKKCGDFKLADEIRESLSNMGIGISDGKDGS-----TR 461 Query: 457 WKQK 460 W +K Sbjct: 462 WHRK 465 >gi|220934112|ref|YP_002513011.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|254781696|sp|B8GNT5|SYC_THISH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219995422|gb|ACL72024.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 460 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 190/485 (39%), Positives = 270/485 (55%), Gaps = 57/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+N+L R+ F ++P +RMYVCG TVYD+ H+G+AR ++VFDV+YR L+ + Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKALGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RNITDIDDKII RA + + I +T + +D L L P+ +PR Sbjct: 61 -VTYIRNITDIDDKIIRRAAEN------GEDIRALTDRFIAAMHEDAEALGVLPPSAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I ++ G+AY +N ++ + + YG S +++++ + G RV Sbjct: 114 ATEHIDGMLAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DL FP Sbjct: 174 AKRDPLDFVLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N W+HNGF+ + KMSKS GNF T+ E+L +P Sbjct: 234 HHENEIAQSEAA-TCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLA-------RYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A V+R +L +HYR P++++ + L A L++ +DPA +A Sbjct: 286 AEVVRYFILSSHYRSPLNYSDEPLDAARAGLTRLYTALRGVQAVDPAGQGEGYRRRFQAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNA--------------------SAHILGI 394 + +D NT A+ L +ARE + D P A A + G Sbjct: 346 MDDDFNTPVAMAVLFDIARELNRLRDEDPAGAAPLAGLLRELGGMLGLLAGDPEAFLKGG 405 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E L++ AIE L+ +RL K K F+ AD IR +L +G +LED G Sbjct: 406 EAGD--LDE---AAIEALIAQRLAARKAKDFAEADRIRDELAGQGVVLED------GPGG 454 Query: 455 TRWKQ 459 T W++ Sbjct: 455 TTWRR 459 >gi|221639139|ref|YP_002525401.1| cysteinyl-tRNA synthetase [Rhodobacter sphaeroides KD131] gi|254781691|sp|B9KRV8|SYC_RHOSK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221159920|gb|ACM00900.1| Cysteinyl-tRNA synthetase [Rhodobacter sphaeroides KD131] Length = 519 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 199/500 (39%), Positives = 275/500 (55%), Gaps = 58/500 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT R+ F+ ID N+R+YVCGPTVYD AH+GN RP++VFDVL+RLLR+ YGE Sbjct: 3 EIRLTNTKSRRKEAFEPIDRKNVRLYVCGPTVYDRAHLGNGRPVVVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKI----IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 VTYVRN TD+DDKI + R P + I T + + + +D L L P Sbjct: 63 GHVTYVRNFTDVDDKINAAALARKDAGDPR-SLEALIRERTDETIRWYHEDMDALGALRP 121 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 T +PRAT I MI +I+++I GHAYE ++F S +YG+ S R +D+ G RV Sbjct: 122 TQEPRATEWIGAMIAMIEDLIAKGHAYEREGHVLFRVRSYRDYGALSGRSVDDMIAGARV 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-------VFD 232 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAM+ L K FD Sbjct: 182 EVAPFKEDPMDFVLWKPSDDELPGWDSPWGRGRPGWHIECSAMADGLLMKDLPENERSFD 241 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+DL FPHHENEIAQS CA + A +W+HN L ++G+KMSKS GNF T+ EL+ Sbjct: 242 IHAGGIDLQFPHHENEIAQSRCAHPEGEFAKVWMHNEMLLVDGKKMSKSLGNFFTVRELI 301 Query: 293 ET--KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQT 340 E K+F + P IRL L HYR PID + +A + L W P T Sbjct: 302 EEYRKQFAVNN-IGPAIRLRFLQGHYRAPIDAARHYIEQASVKLGLWWHFISEHLDAPIT 360 Query: 341 STSKGII--DPAVLSALYNDLNT---VSAIQALHKLARESTKNH-------DLLPIFNAS 388 + I V+ AL +DLNT V+ I L R + D L + Sbjct: 361 DKDRRDILATSPVIEALADDLNTPLAVTYIDGLVSRLRGGIQKQGYVDAEMDDLEMVAKR 420 Query: 389 AHI----LG--IEVCKEH---------------LNKNISIAIEKLVQERLILLKMKKFSS 427 A + LG + +EH + ++ + I +L++ER K + F+ Sbjct: 421 ARVAIEFLGFTFDDLEEHHGPVQLKRLKERQLSASADVGVRIGRLLEERAEARKARDFAR 480 Query: 428 ADYIRKQLESKGFILEDYKN 447 +D IR +L++ G +++D ++ Sbjct: 481 SDAIRDRLQAAGVLIKDSRD 500 >gi|310659543|ref|YP_003937264.1| cysteinyl-tRNA synthetase [Clostridium sticklandii DSM 519] gi|308826321|emb|CBH22359.1| cysteinyl-tRNA synthetase [Clostridium sticklandii] Length = 466 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 196/487 (40%), Positives = 283/487 (58%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F ++ + I+MYVCGPTVY+F HIGNARP ++FD + Y E Sbjct: 1 MKIYNTLTRQKETFIPLEENKIKMYVCGPTVYNFFHIGNARPFMIFDAFRNYMEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII+RA +E S PI + K ++ KD L T PR Sbjct: 60 -VTYVQNFTDVDDKIIKRANEEGIS-PIE-----VAEKYIAEYFKDADALGIKRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I I+++I G AYE N ++ F++ + YG S++ ++E +G R+ Sbjct: 113 VTENIENIITFIEDLISKGFAYELNGDVYFNSQAYKEYGKLSKQNLEELNLGARIDVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK E GW+SPWG GRPGWHIECS MS+ YLG DIH GG DLIFPH Sbjct: 173 KKHPIDFALWKAKKEGEIGWQSPWGEGRPGWHIECSVMSARYLGDTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+HNG++N++ +KMSKS GNF T+ ++L +F G+ Sbjct: 233 HENEIAQS-EARSGKQFARYWMHNGYINVDNQKMSKSLGNFFTVRDIL--SEFSGQ---- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---VLS 353 VIR +L HYR P++F+ + + +A+ + + + S +KG ++ + ++S Sbjct: 286 -VIRFFLLSAHYRNPVNFSKELILQAKAGMERLANSKERLVFTISHAKGQMNESELELVS 344 Query: 354 ALYN-----------DLNTVSAIQALHKLARES----TKNHDL------LPIFNASAHIL 392 AL N D+NT AI + +LAR S T+N L L +FN +L Sbjct: 345 ALENHRDRFIEAMDDDINTADAISIIFELARFSNTNVTENSSLEWAEKNLSLFNELTGVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 I + E + N + IEKL+++R+ K K F+ AD IR +L+S G +ED + Sbjct: 405 NI-IKAEDTDSNDNEQIEKLIKDRVEAKKNKDFALADAIRDELKSMGIEIEDTR------ 457 Query: 453 RMTRWKQ 459 + T+WK+ Sbjct: 458 QGTKWKK 464 >gi|121996916|ref|YP_001001703.1| cysteinyl-tRNA synthetase [Halorhodospira halophila SL1] gi|187629827|sp|A1WT89|SYC_HALHL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|121588321|gb|ABM60901.1| cysteinyl-tRNA synthetase [Halorhodospira halophila SL1] Length = 459 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 189/478 (39%), Positives = 270/478 (56%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L FQ I+P +R+YVCG TVYDF H+G+AR ++VFD + R LR+ E Sbjct: 2 LKIHNSLTGAKEPFQPIEPGQVRIYVCGMTVYDFCHLGHARALVVFDAVVRYLRWLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + ++ +T + + +D + L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAAEN------GEPMTALTDRFIRAMHEDCSALGVEPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + MI LI+ +I GHAY +N ++ F +S P YG S R+++E + G+R+ Sbjct: 114 ATERLESMIALIEELIAGGHAYVGDNGDVYFSVASFPEYGKLSGRRVEELRSGSRIEPDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FDIHGGG+DL FP Sbjct: 174 AKHDPVDFVLWKAAKSGEPAWPSPWGDGRPGWHIECSAMSRDLLGSHFDIHGGGVDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+HNG + ++ KM+KS GNF T+ ++L P Sbjct: 234 HHENEIAQSECASG-HRFVNYWMHNGHVRIDDEKMAKSLGNFFTVRDVLAEH-------P 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIIDPAVLSALY 356 A V+RL +L +HYR P+++T L EA L + P + ++ A+ Sbjct: 286 AEVVRLFLLSSHYRSPLNYTGDALDEARGGLERLYNALRGLPAAAPARSQARERFREAMD 345 Query: 357 NDLNTVSAIQALHKLARESTKNHDLLPI---------FNASAHILGI--EVCKEHLNKNI 405 +D NT A+ L ARE + + +LG+ + + +L ++ Sbjct: 346 DDFNTREALAVLFDGAREINRLREAGDASGAASAAAELRELGAVLGLLQQDPEAYLRGDV 405 Query: 406 SIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + A IE LV +R K K F+ AD IR +L+++G LED P+ T+W++ Sbjct: 406 ADAEAEEIESLVAQRTAARKAKDFAEADRIRDELQARGIELED--TPEG----TKWRR 457 >gi|91774855|ref|YP_544611.1| cysteinyl-tRNA synthetase [Methylobacillus flagellatus KT] gi|122985612|sp|Q1H417|SYC_METFK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91708842|gb|ABE48770.1| cysteinyl-tRNA synthetase [Methylobacillus flagellatus KT] Length = 455 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 196/460 (42%), Positives = 264/460 (57%), Gaps = 36/460 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R F I P + MYVCG TVYD+ H+G+AR M+VFD++ R LR E Sbjct: 2 LKIYNTLARAKQTFSPIIPGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRSSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I+ +T + +D RL P +PR Sbjct: 61 -VTYVRNITDIDDKIIARANEN------GETINALTDRFIAAMNEDAARLGVWRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I +MI +I +I HAY A+N ++ + SS +YG S + +++ + G RV Sbjct: 114 ATDYIHEMIAMIVALIEKHHAYAADNGDVYYAVSSFASYGKLSGKSLEDLRAGERVEVDA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HK++P DF+LWK + P EP W+SPWG GRPGWHIECSAM + +LG FDIHGGG DL FP Sbjct: 174 HKRDPMDFVLWKAAKPGEPSWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEGAHGC-TFVNYWMHNGFIRVDDEKMSKSLGNFFTIREVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----ID------PAVLS 353 A V+R +L HYR P++++ L +A+ L++ T + + ID Sbjct: 286 AEVVRFFILRAHYRSPLNYSSHHLDDAKQALTRLYNTLRGRELPQLDIDWRQPEAERFKQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLL--PIFNASAHILGI------EVCKEHLNKNI 405 AL +D NT A L +LA E+ + + + A A LG+ E K + Sbjct: 346 ALDDDFNTPEAFAVLFELASEANRTGSAVQAALLKALAGQLGLLQRDPDEFLKGEAVAGL 405 Query: 406 S-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 S IE+L+ ERL K K F+ AD IR L ++G ILED Sbjct: 406 SPDEIERLIAERLAARKCKNFAEADRIRDALTAQGIILED 445 >gi|163816509|ref|ZP_02207873.1| hypothetical protein COPEUT_02698 [Coprococcus eutactus ATCC 27759] gi|158448209|gb|EDP25204.1| hypothetical protein COPEUT_02698 [Coprococcus eutactus ATCC 27759] Length = 463 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 203/472 (43%), Positives = 261/472 (55%), Gaps = 51/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL R+ EF+ I+ + +YVCGPTVYD+ HIGNARPMIVFD L R L Y E Sbjct: 1 MKILNTLTRRKEEFKPINEGKVGIYVCGPTVYDYIHIGNARPMIVFDTLRRYLEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA E DA S+I+ + + KD L T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANAEGV-----DA-SVISERYIAEVKKDMAALNVREATTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT IP MI +++ +I +AYE N + F T +YG S++ ID+ + G R V Sbjct: 113 ATEEIPDMIEMVKTLIEKDYAYEVNGTVYFRTRKFKDYGKLSKKNIDDLRSGNRDLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W SPWG GRPGWH+ECS MS Y+G V DIH GG DLI Sbjct: 173 IDEKEDPLDFVLWKPKKEGEPSWPSPWGDGRPGWHLECSVMSKKYIGDVIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFL + KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGTE-FARYWMHNGFLKINNEKMSKSLGNFFTVREIAE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA-----EILLSKWPQTSTSKGI---IDPAVL- 352 +P VIR ML HYR P++F+ + L EA E +L+ + + GI +D +V Sbjct: 285 YPLQVIRFFMLSAHYRSPLNFSAE-LVEASKNGLERILTAVDRLKSINGIDGDVDKSVAD 343 Query: 353 ----------SALYNDLNTVSAIQALHKLAR--------ESTKN--HDLLPIFNASAHIL 392 A+ +DLNT AI + +L + ES+K +L IL Sbjct: 344 EMDAFVKKYEDAMDDDLNTADAISVIFELVKYANVNVTEESSKATVELVLNTIEKLCDIL 403 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 GI E + + IE L++ER K K F+ AD IR QL S G ILED Sbjct: 404 GI--ITEKKEEILDSDIEALIEERQAARKAKNFARADEIRDQLSSMGIILED 453 >gi|134281981|ref|ZP_01768687.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|134246510|gb|EBA46598.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 305] Length = 444 Score = 339 bits (870), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 185/446 (41%), Positives = 249/446 (55%), Gaps = 46/446 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++AHIGNARP +VFDVL RLLR+ Y + V Y RN TD+DDKI A Sbjct: 1 MYVCGPTVYNYAHIGNARPAVVFDVLSRLLRHDYPQ--VVYARNFTDVDDKI--NAAAVA 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +PI IT + + D L L+P +PR T HIP +I LI+ ++ GHAY Sbjct: 57 AGVPIG----TITDRYIDAYHADMQALGVLSPELEPRVTEHIPAIIELIETLLARGHAYV 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 ++F S P YG S R+ ++ G RV +K++P DF+LWK STP PGW+SP Sbjct: 113 VQGHVLFHVPSYPEYGHLSGRRTEDMLAGARVEVAPYKRDPLDFVLWKPSTPDLPGWDSP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WGRGRPGWH+ECSAM +LG DIHGGG DLIFPHHENEIAQ CA W+H Sbjct: 173 WGRGRPGWHVECSAMIGQHLGHTIDIHGGGQDLIFPHHENEIAQGTCAHGT-LYCRTWVH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 N F+ ++G+KMSKS GN + + +LL P IRLA+L THYR P+D+ QRL Sbjct: 232 NSFVTVDGQKMSKSLGNVLLVRDLLAQA-------PGEAIRLALLSTHYRRPLDWNAQRL 284 Query: 328 TEAEILLSKWPQTSTSKGII--------DPAVLSALYNDLNTVSAIQALHKLA------- 372 + A L+++ ++ + + DP +L AL NDLN A+ LH L Sbjct: 285 SAARQTLTRYYESLSKVAQVAVVPQIAADPQLLEALRNDLNVPGALVRLHVLLTVLDDAD 344 Query: 373 RESTKNHDLLPIFNASAHILGI-----EVCKEHLNKNISIA---------IEKLVQERLI 418 ++ + H + SA +LG+ + L I+ L+ ER Sbjct: 345 TDAERAHAKSALLT-SAALLGLLQQPPQAALAQLRPAAPATAVQGLGDTRIKALLAEREQ 403 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 + + F+ AD +R+ LE+ GF +ED Sbjct: 404 ARRDRDFAKADALRETLEAAGFTIED 429 >gi|88800332|ref|ZP_01115898.1| cysteinyl-tRNA synthetase [Reinekea sp. MED297] gi|88776909|gb|EAR08118.1| cysteinyl-tRNA synthetase [Reinekea sp. MED297] Length = 461 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 183/465 (39%), Positives = 266/465 (57%), Gaps = 38/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L + F+ +P N+ +YVCGPTVY++ HIGN R +D+L+R+L Y + Sbjct: 3 LKLHNSLTGQKEHFEPQNPDNVTLYVCGPTVYNYIHIGNGRSAANYDLLFRVLNALYPK- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RN TD+DDKI A+ E I S+ K Q + +D +L L PT PR Sbjct: 62 -VTYARNFTDVDDKINAAAKDEGVDI------SVFAEKYMQAYDEDMAKLGNLEPTIVPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I GHAY A+ ++F S +YG S+R ++ G RV + Sbjct: 115 ATEHIGDIITTIEALIERGHAYAADGHVLFAVDSFDDYGKLSKRNTEDMIAGARVEVASY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S+ PGW+SPWGRGRPGWHIEC+AM +LG+ DIHGGG DL+FPH Sbjct: 175 KKNPMDFVLWKPSSDDLPGWDSPWGRGRPGWHIECTAMIQKHLGETIDIHGGGTDLLFPH 234 Query: 245 HENEIAQ-SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE+AQ +CC+D A W+HN L++EG KMSKS GNFI + ++L + P Sbjct: 235 HENELAQGTCCSDHSGGYAKYWVHNAMLDIEGEKMSKSLGNFIVLRDILNEQ-------P 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVLSAL 355 +IRLA+L HYR ++++ Q L ++ LL + +T I D + L Sbjct: 288 PELIRLALLTAHYRSNMNWSEQLLHQSRSLLDRLYTIKRDGDALITTDIDIRDTEFFAML 347 Query: 356 YNDLNTVSAIQALHKL------ARESTKNHDLLPIFNASAHILGI-----EVCKEHLNKN 404 +DLNT A LH+L A + L +A A +G+ + + + + Sbjct: 348 LDDLNTPKAFANLHELTTRFFKAESDDERAALKSEIHAIADFIGVMQMDAQAWFQGTSDD 407 Query: 405 ISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ AIE L++ER+ + K F+ AD IR QL ++G ++D + Sbjct: 408 SALSADAIEALLEERVAAKEAKDFARADEIRDQLAAEGIQIKDTR 452 >gi|323705641|ref|ZP_08117215.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535118|gb|EGB24895.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 464 Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 189/488 (38%), Positives = 272/488 (55%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF ++ + + MYVCGPTVY+F HIGNAR IVFD + R L Y G K Sbjct: 1 MKIYNTLTRKKEEFVPLNDNVVNMYVCGPTVYNFIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I+R+ +E N + + + +++ KD L T PR Sbjct: 60 -VNYVQNFTDIDDKLIKRSHEE------NTTVKELADRYIEEYFKDADSLGIKRATFHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I ++ +I G AYE + + +DT+ +YG S + IDE K G R+ Sbjct: 113 ATENIKEIIEFVKKLIDKGFAYEKDGNVYYDTTKFKDYGKLSHKNIDELKAGARIEVNED 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK + EP W+SPWG+GRPGWHIECS MS+ +LGK DIH GG DLIFPH Sbjct: 173 KKNPTDFVLWKAAKEGEPYWDSPWGKGRPGWHIECSTMSTKFLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ E A W+H G+LN+ KMSKS NF T+ +++ + Sbjct: 233 HENEIAQSEAANDAE-FAKYWMHIGYLNINNEKMSKSKNNFFTVRDVIS-------QYDP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIIDPA------------- 350 V+R MLM+HYR PI+++ + +A+ + T + + ++D A Sbjct: 285 EVLRFFMLMSHYRNPINYSQDLIEQAKNGYLRLSNTVYNLQHLLDVAEDRQLSDEEKAYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI + ++ R+ N D +L +F + + Sbjct: 345 EKYEEYRRKFEEAMDDDFNTADAISVIFEMVRDINSNIDGNSPKELIKYILDVFLNLSSV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI K+ L + I++L+++R K K ++ AD IR +L+ +G +LED N Sbjct: 405 LGITYKKKEL---LDDEIKELIEKRQEARKAKNWAEADRIRDELKKQGIVLEDTPNG--- 458 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 459 ---VRWKR 463 >gi|71275651|ref|ZP_00651936.1| Cysteinyl-tRNA synthetase, class Ia [Xylella fastidiosa Dixon] gi|71897805|ref|ZP_00680031.1| Cysteinyl-tRNA synthetase, class Ia [Xylella fastidiosa Ann-1] gi|170729530|ref|YP_001774963.1| cysteinyl-tRNA synthetase [Xylella fastidiosa M12] gi|71163542|gb|EAO13259.1| Cysteinyl-tRNA synthetase, class Ia [Xylella fastidiosa Dixon] gi|71732360|gb|EAO34414.1| Cysteinyl-tRNA synthetase, class Ia [Xylella fastidiosa Ann-1] gi|167964323|gb|ACA11333.1| Cysteine--tRNA ligase [Xylella fastidiosa M12] Length = 467 Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 191/473 (40%), Positives = 267/473 (56%), Gaps = 51/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +YNTL R++ F+ +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR YG Sbjct: 2 SLHLYNTLHRRVEPFEPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+++ +PI S IT + + +D +L P +P Sbjct: 61 -ALRYARNITDVDDKINTAAQEQ--GVPI----SAITERFCAAYREDMKKLGVEPPDIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+PQ+I +I+ +I HAY A ++F +S +YG SRR +E G RV Sbjct: 114 EATAHMPQIIAMIEQLIERQHAYVAMEHVLFAVNSFADYGQLSRRDPEEMLAGARVEIAP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P+DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FP Sbjct: 174 YKRDPSDFVLWKPSSDQLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A IW+HNG LN EG KMSKS GN T++ L+ TK P Sbjct: 234 HHENEIAQSRCAHGSSTFARIWMHNGMLNFEGAKMSKSLGNIETVHGLV-TKH------P 286 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R A+L HYR+P+D+ T+ RL L+ +P ++ II + + Sbjct: 287 PEALRYALLSAHYRKPLDWSEALIAQSVRTLNRLYGTLRELAAYP----ARAIIPGNIEA 342 Query: 354 ALYNDLNTVSAIQALHKLARES------TKNHDLLPIFNASAHILGIEVC---------- 397 AL +DLNT A+ L LA E+ T +H + A + + Sbjct: 343 ALDDDLNTPQALAELATLANEARIQLADTTHHAAAEVTTALTRLKAKLLGAGLALGLLQQ 402 Query: 398 ------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++ I+ L+ R + + F AD IR QL ++G +LED Sbjct: 403 TPEAWFSQGTNESDETHIQALIDARSAAKQARDFVRADAIRAQLAAEGIVLED 455 >gi|197103884|ref|YP_002129261.1| cysteinyl-tRNA synthetase [Phenylobacterium zucineum HLK1] gi|229470556|sp|B4RE90|SYC_PHEZH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|196477304|gb|ACG76832.1| cysteinyl-tRNA synthetase [Phenylobacterium zucineum HLK1] Length = 470 Score = 338 bits (868), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 164/383 (42%), Positives = 235/383 (61%), Gaps = 26/383 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T+ R +F DP + MYVCGPTVY++AHIGN RP++VFD+L+R+LR YGE Sbjct: 3 LKLYDTMTRAKRDFVPSDPERVTMYVCGPTVYNYAHIGNFRPVVVFDLLFRVLRALYGED 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y N+TD+DDKI +A +E +PI ++ + + D L LAPT QP+ Sbjct: 63 HVLYAANVTDVDDKINRKAAEE--GVPIG----VVAERYLAAYNADARALGALAPTFQPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++ +I ++ +G AY A ++F T + P+YG S R +++ G RV + Sbjct: 117 VTETMDAIVGMIGRLVDNGAAYAAEGHVLFSTEAFPDYGKLSGRPLEDLIAGARVDVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF+LWK S P EP WESPWG GRPGWHIECSAM LG DIHGGG+DL+FPH Sbjct: 177 KKDPRDFVLWKPSKPGEPEWESPWGPGRPGWHIECSAMIEEALGLPIDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCA----DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 HENE+AQ CA + A W+HNGFLN+ KMSKS GN ++LL+T Sbjct: 237 HENELAQGVCAAHPHGHGQTYARYWLHNGFLNMAEEKMSKSVGNVALAHDLLKT------ 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAV 351 WP +R A+L YR+P+++T + +A+ L + P + ++ +DP V Sbjct: 291 -WPGEALRWALLSGQYRQPLEWTDTLIEQAKSALDRLYRVLDDAARPGDAAAEPFVDPRV 349 Query: 352 LSALYNDLNTVSAIQALHKLARE 374 +AL++DLNT +A+ AL +++ E Sbjct: 350 EAALHDDLNTPAAMAALFQISDE 372 >gi|237747642|ref|ZP_04578122.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gi|229379004|gb|EEO29095.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Length = 462 Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 193/464 (41%), Positives = 270/464 (58%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R F I+P +RMYVCG T+YD+ HIG+AR M+ FDV+YR L+ E Sbjct: 4 LQIYNSLTRSKEVFTPIEPGKVRMYVCGMTIYDYCHIGHARMMMSFDVVYRWLKATGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + IS +TS+ TQ +DT L L P H+PR Sbjct: 63 -VTYVRNITDIDDKIINRAAEN------GEPISSLTSRFTQYMHEDTCALGILPPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ LI + +G AY++ + ++ + YG S + +D+ + G RV Sbjct: 116 ATEYVPEMLELIGKLEKNGLAYQSTDGDVNYSVRDFEGYGKLSGKSLDDLRAGERVDINT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W S WG GRPGWHIECSAMSS LG+ FDIHGGG DL Sbjct: 176 GKRDPLDFVLWKSAKPTEPEEAKWPSRWGTGRPGWHIECSAMSSKLLGEHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++L + Sbjct: 236 QFPHHENEIAQSEGASH-HPFVNYWMHNGFVRVDNEKMSKSLGNFFTIRDVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 S+ A V+R ++ +HYR P++++ L +A+ L++ + D AV Sbjct: 288 SYDAEVLRFFIIRSHYRSPLNYSDAHLDDAKNALTRLYTALKDVDVKDQAVDWDSEYAKR 347 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGI--EVCKEHLNKNIS 406 SA+ +D NT A+ L +LA E + H +L A A +LG+ ++ L + + Sbjct: 348 FASAMNDDFNTPEAVAVLFELANEVNRTHLAELGSQLKALAGVLGLLERDPRQFLQGDGA 407 Query: 407 IA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE +Q R+ K K F+ AD IR +L KG +LED Sbjct: 408 VDEGEEKWIESQIQARIDAKKAKNFAEADKIRSELLEKGIVLED 451 >gi|114330220|ref|YP_746442.1| cysteinyl-tRNA synthetase [Nitrosomonas eutropha C91] gi|122314719|sp|Q0AJJ4|SYC_NITEC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114307234|gb|ABI58477.1| cysteinyl-tRNA synthetase [Nitrosomonas eutropha C91] Length = 467 Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 196/488 (40%), Positives = 278/488 (56%), Gaps = 54/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+TL R EF + P ++MYVCG TVYD H+G+AR ++VFD + R L+ E Sbjct: 2 LKIYDTLTRSRREFIPLTPGKVKMYVCGMTVYDHCHLGHARVLVVFDSVVRWLQTLDYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + H + +T++ Q +D L ++P+ +PR Sbjct: 61 -VTYVRNITDIDDKIIRRALENH------EPFGALTARYIQAMEEDAAALGIISPSFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I M+ +I++++ G AY ANN ++ +D P YG S + +D+ + G RV Sbjct: 114 ATECIESMVTMIESLLSKGLAYVANNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAMS HYLG+ FDIHGGG DL FP Sbjct: 174 NKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSGHYLGERFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS N W+HNGF+ ++ KMSKS GNF T+ E+L R P Sbjct: 234 HHENEIAQSEGV-HGHPHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVL------ARYQP 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL------------SKWPQTSTSKGIID--- 348 V+R ++ HYR P++++ L +A L S+ + ID Sbjct: 287 E-VVRFFIVRAHYRSPLNYSDAHLNDARNALERLYTALKNHAPSQAQAAEEATATIDWVN 345 Query: 349 ----PAVLSALYNDLNTVSAIQALHKLARES--TKNHDLLPIFNASAHILGI--EVCKEH 400 ++A+ +D NT A+ L LA E+ T N + A ILG+ + +++ Sbjct: 346 DGYAQRFMAAMNDDFNTPEAVAVLFDLASEANRTGNSHYASLLKALGGILGLLQQSPRQY 405 Query: 401 L-------NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 L N + SI IE+++Q+RL K K F+ AD +R+QL G ILED G Sbjct: 406 LQHPAHPQNDHHSIEEIERMIQQRLQARKEKNFAQADALRQQLAEAGIILED------GP 459 Query: 453 RMTRWKQK 460 + T W+++ Sbjct: 460 QGTTWRRQ 467 >gi|313672372|ref|YP_004050483.1| cysteinyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312939128|gb|ADR18320.1| cysteinyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 479 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 200/479 (41%), Positives = 272/479 (56%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL + F ++ + +++YVCG TVYD+ HIG+AR IVFD + R L+Y + Sbjct: 2 LKIFNTLSGEKEVFTPLEDNKVKIYVCGVTVYDYCHIGHARSSIVFDTIRRYLKYKGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII+RA +E N +I+ IT + +D +L L P + PR Sbjct: 61 -VTFVKNFTDVDDKIIKRANEE------NKSINEITDFFIKAHDEDMDKLNILRPDYTPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI L + +I G AYE+N ++ F + +YG S+R +D+ G RV Sbjct: 114 ATEYIDGMIKLCEKLIEKGFAYESNGDVYFKVRAFKDYGKLSKRDLDDLLAGARVDVNEI 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWKRS EPGW+SPWGRGRPGWHIECS MS+ LG FDIHGGG DLIFPH Sbjct: 174 KEDPLDFALWKRSKEGEPGWDSPWGRGRPGWHIECSVMSAEILGIPFDIHGGGKDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ E A WIHNGF+N+ KMSKS GNF TI ++L + Sbjct: 234 HENEIAQSEAAEGKE-FARYWIHNGFVNINKEKMSKSLGNFFTIRDVL-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------PQTSTSKGIIDPAV 351 V+R +L THYR P+DF+ + L EAE L + + KG ID V Sbjct: 286 EVLRFFLLTTHYRSPLDFSFENLLEAENALDRIYTAIDELESAVFNNKKPAQKGKIDEIV 345 Query: 352 -------LSALYNDLNTVSAIQALHKLAR-------ESTKNHDL----LPIFNASA---H 390 ++ +D NT SAI + +L + E + DL + A Sbjct: 346 DRFKRDFEESMDDDFNTASAISNIFELIKGVNLLLSERLNSEDLNYLKVRFEEVKAIIRD 405 Query: 391 ILGI--EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI + E N+SI ++KL++ER I + K FS AD IR +L++KG L D Sbjct: 406 VLGILTKTASEWFKMNLSIDESELQKLIEEREIARRNKDFSKADAIRNELKTKGVELLD 464 >gi|51473263|ref|YP_067020.1| cysteinyl-tRNA synthetase [Rickettsia typhi str. Wilmington] gi|61216180|sp|Q68XV4|SYC_RICTY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|51459575|gb|AAU03538.1| Cysteine translase [Rickettsia typhi str. Wilmington] Length = 457 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 202/457 (44%), Positives = 277/457 (60%), Gaps = 28/457 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YNTL R F D +N++MYVCGPTVYD HIGN+R ++V+D+LYR++ +G+ Sbjct: 2 QLHLYNTLTRTKEVFNPQDHANVKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIIIKIFGK 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V YVRNITDIDDKII+RA E I IND +T+K T++F + L C+ P+ +P Sbjct: 62 KAVKYVRNITDIDDKIIDRA--ESLGININD----LTNKVTREFHINMAYLGCMLPSIEP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT HI MI +I+ +I HAY +N + FD S PNY S R ++E G R+ Sbjct: 116 KATEHIDVMIEIIERLIAQDHAYITDNHVYFDVLSAPNYTELSNRNLEEMFEGVRIENSK 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK + EP + SPWG GRPGWHIECSAMS YLG+ FDIHGGG DL Sbjct: 176 TKKNPQDFVLWKPAKQNEPKNVNFSSPWGLGRPGWHIECSAMSYKYLGENFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHH NEIAQS CA A WIHNGFL + G KMSKS GNFIT+ +L++ + G Sbjct: 236 IFPHHTNEIAQSRCAFPSSTYAKYWIHNGFLTVNGEKMSKSLGNFITVRDLMDKQIQG-- 293 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDPAVLSALY 356 V+RL +L +HYR P+D+ + + +A+ L W + + K + + +L+ Sbjct: 294 ----EVVRLFLLSSHYRRPLDYNDKAIDDAKKTLDYWYRAIKEINVQKVDLPSDFMQSLF 349 Query: 357 NDLNTVSAIQALHKLARES-TKNHDLLPIFNAS-----AHILGI--EVCKEHLNKNIS-I 407 +D+NT AI+ ++ A+ + FNAS A+ +G+ + E N +I + Sbjct: 350 DDMNTPLAIKIINDYAKGVFISKTEAERKFNASAIITCANFIGLMRKTQYEWFNNDIDKL 409 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I +L+ +RL K K + AD IR QL K ILED Sbjct: 410 YINELINKRLKAKKQKNWLLADKIRNQLLEKKIILED 446 >gi|33152217|ref|NP_873570.1| cysteinyl-tRNA synthetase [Haemophilus ducreyi 35000HP] gi|38372510|sp|Q7VMA0|SYC_HAEDU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33148439|gb|AAP95959.1| cysteinyl-tRNA synthetase [Haemophilus ducreyi 35000HP] Length = 459 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 185/465 (39%), Positives = 266/465 (57%), Gaps = 42/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPAQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N++ + + + D L + P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NESCEALVERMIAEMHNDFDALNIMRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ +I++GHAY A+ +++FD +S YG+ SR+ +D+ + G RV K Sbjct: 114 ATEHIAEIIAMVEKLIMNGHAYVAADGDVMFDVTSFNQYGALSRQNLDQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWKRS EP W SPWG GRPGWHIECSAM++ LG+ FDIHGGG DL+FP Sbjct: 174 AKKNPMDFVLWKRSKENEPSWLSPWGNGRPGWHIECSAMNNKELGEHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + E N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHQGEYV-NYWLHTGMLTIDKEKMSKSVGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 A +R L HYR +D++ L A L + Q + + + A + Sbjct: 286 AESLRYFFLTAHYRSLLDYSTDNLDLARSALERLYTALRGCDLSVQANGGENYV-TAFKT 344 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT +A+ L ++ARE K + L A +LG+ K Sbjct: 345 AMDDDFNTPAALAVLFEMAREVNKLKTEDQQQANALAVCLKELAAVLGLLTQDPDNFLKG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +N + + IE L+Q+R K ++ AD +R +L++ +LED Sbjct: 405 EVNIDQTAEIEALIQQRNQAKANKNWAVADQVRGKLKAMNILLED 449 >gi|253988481|ref|YP_003039837.1| cysteinyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779931|emb|CAQ83092.1| cysteinyl-tRNA synthetase [Photorhabdus asymbiotica] Length = 461 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 193/482 (40%), Positives = 273/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHPGIVGMYVCGITIYDLCHIGHGRTFVAFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + H S +TS+ + KD L L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRAAENHESC------DDLTSRMLAEMYKDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I L +++I GHAY A+N +++F S +YG+ SR+ + + + G RV Sbjct: 114 ATRHIPEIIELTESLIKRGHAYVADNGDVMFSVESDSDYGALSRQDLSQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGKGRPGWHIECSAMNGKQLGNHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R +L HYR +++T + L +A L + + + + PA + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDASVSPAGGEVFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI--EVCKEHLNKN 404 + +D NT A L +ARE K+ D L + A ILG+ + ++ L+ Sbjct: 346 MNDDFNTPEAYSVLFDMAREINCLKSEDLSAANGLAAVLRKLAGILGLLEQDPEQFLHSG 405 Query: 405 ISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K K ++ AD R QL G LED G + T W+ Sbjct: 406 VQVDDEDIAKIEALIKQRNDARKNKDWTLADSARDQLNEMGIELED------GPQGTSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|239947072|ref|ZP_04698825.1| cysteinyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921348|gb|EER21372.1| cysteinyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes scapularis] Length = 350 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 169/340 (49%), Positives = 221/340 (65%), Gaps = 15/340 (4%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D +N++MYVCGPTVYD HIGN+R ++V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQANVKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +G + V YVRNITD+DDKII+RA E I IN+ +T K TQ+F + L C+ P+ Sbjct: 61 FGSRAVKYVRNITDVDDKIIDRA--ELLGITINE----LTDKVTQEFHTNMAYLGCMLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G RV Sbjct: 115 IEPKATEHIDVMIEIIERLITKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVRVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KKNP DF+LWK + E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKNPQDFVLWKPAKQNESANMNFESPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A WIHNGFL + G+KMSKS GNFIT+ +L++ + Sbjct: 235 ADLIFPHHTNEIAQSRCAFLSSTYAKYWIHNGFLTVNGKKMSKSLGNFITVRDLMDKQIQ 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 G V+RL +L +HYR P+D+ + + +A+ L W Sbjct: 295 G------EVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYW 328 >gi|197120161|ref|YP_002140588.1| cysteinyl-tRNA synthetase [Geobacter bemidjiensis Bem] gi|226710842|sp|B5EEK6|SYC_GEOBB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|197089521|gb|ACH40792.1| cysteinyl-tRNA synthetase [Geobacter bemidjiensis Bem] Length = 480 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 203/500 (40%), Positives = 270/500 (54%), Gaps = 66/500 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL EF I+P + MYVCG TVYD HIG+AR +VFD++YR LR E Sbjct: 3 LRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLRSKGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKII RA ++ +P N+ I+ + ++F D RL PT QP+ Sbjct: 62 -VTYVRNYTDIDDKIINRANRD--GVPYNE----ISERFIKEFDNDMARLMLQLPTFQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I L+Q +I G AY++ +++ + Y S+R +++ + G R+ Sbjct: 115 ATEHIPEIIALVQTLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ +LG+ DIHGGG DLIFPH Sbjct: 175 KEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+LE S+ A Sbjct: 235 HENEIAQSEAASG-KPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILE-------SYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPA-------- 350 V+R +L HYR PIDF+ Q L EAE+ L + + + G PA Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALAGIYERLASGANTPAGADNAEFV 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHIL 392 A+ +D NT A+ L L R T + LL A A +L Sbjct: 347 EKVAGFAGRFGDAMDDDFNTALALGHLFDLVRVINRELPTASTGLLEQAKAEVAKMAAVL 406 Query: 393 GI---------EVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 GI + K+ +I ++ IE L+ ER K K F D IR L K Sbjct: 407 GICDSVPAAFLQRMKDRKTSDIEMSAEEIEALIAERAEARKAKNFKRGDEIRDLLLEKNI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 467 VLLD------SAQGTTWKVK 480 >gi|297537709|ref|YP_003673478.1| cysteinyl-tRNA synthetase [Methylotenera sp. 301] gi|297257056|gb|ADI28901.1| cysteinyl-tRNA synthetase [Methylotenera sp. 301] Length = 469 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 269/473 (56%), Gaps = 48/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 LKIYNTLAREKQTFTPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVSRWLRS--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + + +D+ +L + P +P+ Sbjct: 60 AVTYVRNITDIDDKIIKRANEN------GETIGQLTQRFIEAMDEDSAKLGIIRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I +I G AY AN ++ + ++ YG S + +++ + G RV Sbjct: 114 ATEFIDGMIQMISALIEKGFAYVAANGDVFYSVNNFEGYGKLSGKSLEDLRAGERVEVDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWG-----RGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 HKK+P DF+LWK P EP W+SP+G +GRPGWHIECSAMSSH+LG+ FDIHGGG Sbjct: 174 HKKDPMDFVLWKSVKPNEPSWDSPFGGPNGGKGRPGWHIECSAMSSHHLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIE----KTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI +LE Sbjct: 234 DLQFPHHENEIAQSEAAHSHNGEPCQMVNYWMHNGFVRVDDEKMSKSLGNFFTIRTVLE- 292 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--- 351 + A V+R +L HYR P++++ Q L +A++ L++ + + D A+ Sbjct: 293 ------KYDAEVVRFFILRAHYRSPLNYSDQHLDDAKLALTRLYTSLRGHVVADVAIDWQ 346 Query: 352 -------LSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI-------- 394 A+ +D NT A+ L LA E TK+ ++ + + A +LG+ Sbjct: 347 QPHSARFKEAMDDDFNTPEAMAVLFDLANEVNKTKSLEVAALLKSLAGVLGLLQRDADAF 406 Query: 395 ---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +V + + I I++LV +R K K F+ AD IRK+L G +LED Sbjct: 407 LQGDVAAQLAGTELKIDIDQLVIQRNEAKKTKNFAEADRIRKELADAGIVLED 459 >gi|30248074|ref|NP_840144.1| cysteinyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718] gi|61216300|sp|Q82Y45|SYC_NITEU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|30179959|emb|CAD83954.1| Cysteinyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718] Length = 465 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 186/470 (39%), Positives = 266/470 (56%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+TL R EF + P +RMYVCG TVYD+ H+G+AR ++VFD + R L+ G K Sbjct: 2 LKIYDTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQTL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII RA + H + S +T++ Q +D L ++P+ +PR Sbjct: 61 -VIYVRNITDVDDKIIRRALENH------EPFSALTARYIQAMEEDAMALGVISPSFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ MI +I++++ AY A+N ++ +D P YG S + +D+ + G RV Sbjct: 114 ATEYVDSMIAMIESLLNRELAYVASNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAMS HYLG FDIHGGG DL FP Sbjct: 174 NKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSEHYLGDQFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS N W+HNGF+ ++ KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSEGV-HGHSHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLT-------RYQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIID----- 348 V+R ++ HYR P++++ L +A L + + + +ID Sbjct: 286 PEVVRFFIVRAHYRSPLNYSDAHLNDARSALERLYTVLKNHAPSQDSEVATAVIDWENNV 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG--------IEV 396 +SA+ +D NT A+ L LA E+ + D + A +LG Sbjct: 346 YARRFMSAMNDDFNTPEAVAVLFDLASEANRTGDSHYASLLKALGGVLGLLQQPPQQYLQ 405 Query: 397 CKEHL-NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 HL + S+ IE ++Q+RL K + F+ AD +R+QL G ILED Sbjct: 406 YPAHLQDGQYSVEEIENMIQQRLQARKERNFAQADTLRQQLAEAGIILED 455 >gi|53805250|ref|YP_113028.1| cysteinyl-tRNA synthetase [Methylococcus capsulatus str. Bath] gi|61216155|sp|Q60BG8|SYC_METCA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53759011|gb|AAU93302.1| cysteinyl-tRNA synthetase [Methylococcus capsulatus str. Bath] Length = 465 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 192/470 (40%), Positives = 267/470 (56%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ ++P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR+ G K Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHL-GLK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII RA + + I +T++ + +D L L P H+PR Sbjct: 61 -VTYVRNVTDIDDKIIRRA------VENGETIGALTARFIEAMHEDERALGVLPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++ +I +I GHAY +N ++ + +S PNYG S + +DE + G R+ Sbjct: 114 ATESIDDILAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG+DL FP Sbjct: 174 AKRDPLDFVLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N W+HNGF+ + KMSKS GNF T+ E+L R P Sbjct: 234 HHENEIAQSEGATG-EHFVNYWMHNGFVRINEEKMSKSLGNFFTVREIL------ARYRP 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------WPQTSTSKGIIDPA 350 V+R +L +HYR P++++ + L EA LS+ P Sbjct: 287 -EVVRFFILNSHYRSPLNYSDENLDEAAAALSRLYTALRGLAPDLPLPLGEDRDEGFSSR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKN--------HDLLPIFNASAHILGI-------E 395 A+ +D NT AI L LARE ++ L + ++LG+ Sbjct: 346 FADAMQDDFNTPEAIAVLFDLAREINRHKAAEPAKAAALGATLKSLGNVLGLLQTDPEAY 405 Query: 396 VCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +S A IE ++ RL K K ++ +D IR +L+++G ILED Sbjct: 406 FKSDAGGSGLSDADIETRIRARLEARKAKNWAESDRIRDELKAQGIILED 455 >gi|77917718|ref|YP_355533.1| cysteinyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] gi|109894916|sp|Q3A8C9|SYC_PELCD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77543801|gb|ABA87363.1| cysteinyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] Length = 481 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 190/501 (37%), Positives = 267/501 (53%), Gaps = 67/501 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ + EF+ + P + MYVCG TVYD+ HIG+AR +VFD++YR L++ + Sbjct: 3 LRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII+RA + S + + Q F +D RL PT QP+ Sbjct: 62 -VTYVRNYTDVDDKIIKRANERGISS------DTLAGEFIQAFDEDMNRLGLAEPTIQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ L+Q +I G AYE+ ++ F P+Y S+R +DE + G R+ Sbjct: 115 ATCHIDHIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQ 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRNPMDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI ++L+T + Sbjct: 235 HENEIAQSEGATG-KPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQT-------YDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------TSTSKGII 347 V+R +L HYR PIDF+ Q L +A + LS++ + TS + + Sbjct: 287 EVLRFFILTAHYRSPIDFSDQNLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGATL 346 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAR-------------ESTKNHDLLPIFNA------- 387 + A+ +D NT +AI L R K + +++A Sbjct: 347 ENVFREAMDDDFNTAAAIGHLFDAVRTINRLITEKGFRKNREKVAQVRALYDALLKLGGV 406 Query: 388 --------SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 +A + + + IE +++R K K F+ AD IR +L +KG Sbjct: 407 LGLFVSDPAAWLKQMNLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRDELAAKG 466 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 L D G + T WK + Sbjct: 467 IQLLD------GPQGTAWKAR 481 >gi|304315919|ref|YP_003851064.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777421|gb|ADL67980.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 464 Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 191/473 (40%), Positives = 264/473 (55%), Gaps = 52/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF ++ + + MYVCGPTVY+F HIGNAR IVFD + R L Y G K Sbjct: 1 MKIYNTLTRKKEEFVPLNDNIVNMYVCGPTVYNFIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I+R+ +E N + + + +++ KD L T PR Sbjct: 60 -VNYVQNFTDIDDKLIKRSHEE------NTTVKELADRYIEEYFKDADSLGIKRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I ++ +I G AY N ++ +DT+ YG S + IDE K G R+ Sbjct: 113 ATENIDDIINFVKKLIDKGFAYVLNGDVYYDTTKFKEYGKLSHKNIDELKAGARIEVNED 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK + EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPTDFVLWKAAKEGEPYWDSPWGKGRPGWHIECSTMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ E A W+H G+LN+ KMSKS NF T+ ++ + Sbjct: 233 HENEIAQSEAANDAE-FARFWMHIGYLNINNEKMSKSKNNFFTVRDITS-------QYDP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIIDPAV---LS------- 353 V+R ML +HYR PI+F+ L +++ + T + + ++D A+ LS Sbjct: 285 EVLRFFMLTSHYRNPINFSHDLLEQSKSGFLRLSNTVDNLRHLLDDALDRELSDEEKAYK 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++ R+ N D +L IF + + Sbjct: 345 EKYDEYKRRFEEAMDDDFNTADAISVLFEMVRDINTNIDGNSPKELIEYILDIFLKLSSV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LGI K L + I+KL+++R K K ++ AD IR +L+ +G LED Sbjct: 405 LGISYKKRDL---LDDEIKKLIEKREEARKAKNWAEADKIRDELKKQGIALED 454 >gi|95929121|ref|ZP_01311866.1| cysteinyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] gi|95135022|gb|EAT16676.1| cysteinyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] Length = 481 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 198/499 (39%), Positives = 271/499 (54%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL F+ P + MYVCG TVYD+ HIG+AR IVFD++YR L+Y + Sbjct: 3 LRVYNTLSGNKELFEPRVPGKVGMYVCGVTVYDYCHIGHARANIVFDIVYRYLKY--SDY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA + + ++ + Q F +D RL PT QP+ Sbjct: 61 DVTYVRNYTDVDDKIINRANERGITS------QQLSEEFIQAFDEDMARLGLDLPTVQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I L++ +I +G AY ++ ++ F S +Y S+R +DE + G R+ Sbjct: 115 ATEHIDHIIALVERLIANGKAYASDGDVYFAVESFDSYLKLSKRNLDEMQAGARIAPGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP WESPWG+GRPGWHIECSAM YLG+ FDIHGGG DL+FPH Sbjct: 175 KRNPMDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMGMEYLGESFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI ++L+T + Sbjct: 235 HENEIAQSEAATG-QPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILKT-------YDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------DPAVL 352 V+R +L HYR PIDF+ Q L EA + LS++ + + + D A L Sbjct: 287 EVVRFFILSAHYRSPIDFSDQNLKEARLGLSRFYEGLQAAAEVLAECPPSDVEATDGAEL 346 Query: 353 SALY-----NDLNTVSAIQALHKLAREST---------KNHDLLP-------IFNASAHI 391 +A + +D NT AI L + R K DL+ F + Sbjct: 347 TAKFREAMDDDFNTAQAIGYLFEGIRTMNRLMATKKFRKKADLVASVRSLYDTFLELGKV 406 Query: 392 LGI--EVCKEHLNK-------NISIAIEK---LVQERLILLKMKKFSSADYIRKQLESKG 439 LG+ K LN+ ++ I +E+ L+ ERL + K F+ +D IR +L KG Sbjct: 407 LGMFGSEPKAWLNQQRLSALADLDITVEEIDALIAERLQARQDKDFARSDAIRDELAEKG 466 Query: 440 FILEDYKNPDNGQRMTRWK 458 +L D G T WK Sbjct: 467 ILLLD------GAGGTDWK 479 >gi|262039625|ref|ZP_06012919.1| cysteine--tRNA ligase [Leptotrichia goodfellowii F0264] gi|261746382|gb|EEY33927.1| cysteine--tRNA ligase [Leptotrichia goodfellowii F0264] Length = 505 Score = 335 bits (860), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 197/506 (38%), Positives = 276/506 (54%), Gaps = 81/506 (16%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ +YNT+ KI EF+ I+ ++MYVCGPTVY++ H+GNARP+++FD+L R +Y + Sbjct: 11 KMNLYNTMSNKIEEFKPIEEGKVKMYVCGPTVYNYIHLGNARPVVIFDILARYFKYRGYD 70 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYV+N TD+DDKII+RA +E S P +T K Q F +DT L L +P Sbjct: 71 --VTYVQNFTDVDDKIIKRANEEGIS-PKE-----VTEKYIQGFFEDTELLNILQDIKRP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + T ++P++I I+ +I +G+AYE + + FD +YG S +KIDE ++G RV Sbjct: 123 KVTENMPEIIETIEKLIENGYAYEIDGNVFFDVKKYEDYGKLSNQKIDELEIGARVDIME 182 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K NP DF LWK+ EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DLIFP Sbjct: 183 IKNNPLDFALWKKKKEGEPYWDSPWGQGRPGWHIECSAMSKKYLGETFDIHGGGQDLIFP 242 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A W+HNGF+ + G KMSKS GNF + E+L KF G Sbjct: 243 HHENEIAQSKCAYH-GHFAKYWVHNGFVQVNGDKMSKSTGNFFLLREIL--GKFSGN--- 296 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWPQTSTSKGIIDP 349 VIRL +L THYR+P++F+ + + E L K S+ + D Sbjct: 297 --VIRLFILSTHYRKPVNFSFEDMENTKKTLQNVISSIRRFEKSLEKLSSGIKSEDVSDE 354 Query: 350 AV------------------LSALYNDLNTVSAIQALHKLAREST-------------KN 378 + + A+ D+NT A+ + RE+ +N Sbjct: 355 KINEINKVFKEKIKSFDVKFIGAMDEDMNTPQALSTIFDQIRETNRFCDDIEKILDKERN 414 Query: 379 HDLLPIFNAS-----------AHILGIEVC------KEHLNKNISIAIEKLVQERLILLK 421 +F A +LG+ + K+ L+KN+ IE L++ R K Sbjct: 415 DSSFLLFEALELSYKNLKTKIEDVLGVLLMDEKKENKDDLSKNL---IELLIKIRTEARK 471 Query: 422 MKKFSSADYIRKQLESKGFILEDYKN 447 K FS +D IR +L+ G ++D K+ Sbjct: 472 EKNFSLSDEIRDELKKIGVEIKDNKD 497 >gi|68736678|sp|Q9PEN3|SYC_XYLFA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 467 Score = 335 bits (860), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 262/473 (55%), Gaps = 51/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +YNTL R++ F+ +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR YG Sbjct: 2 SLHLYNTLHRRVEPFEPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+++ +PI S IT + + +D +L P +P Sbjct: 61 -ALRYARNITDVDDKINTAAQEQ--GVPI----SAITERFCAAYREDMKKLGVEPPDIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+PQ+I +I+ +I HAY A ++F +S +YG SRR +E G RV Sbjct: 114 EATAHMPQIIAMIEQLIERQHAYVAMEHVLFAVNSFADYGQLSRRDPEEMLAGARVEIAP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P+DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FP Sbjct: 174 YKRDPSDFVLWKPSSDQLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A +W+HNG LN EG KMSKS GN T++ L+ P Sbjct: 234 HHENEIAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNIETVHGLVAKH-------P 286 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R A+L HYR+P+D+ T+ RL L+ +P G I+ + Sbjct: 287 PEALRYALLSAHYRKPLDWSEALIAQSVRTLNRLYGTLRDLAAYPAHPFIPGNIE----A 342 Query: 354 ALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVC----------- 397 AL +DLNT A+ L LA E + H A+ L E+ Sbjct: 343 ALDDDLNTPQALAELATLANEARIQLADTTHHAAAEVTAALTRLKAELLGAGLALGLLQQ 402 Query: 398 ------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++ I+ L+ R + + F AD IR QL ++G +LED Sbjct: 403 TPEAWFSQGTNESDETHIQALIDARGAAKQARDFVRADAIRAQLAAEGIVLED 455 >gi|319786826|ref|YP_004146301.1| cysteinyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317465338|gb|ADV27070.1| cysteinyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 458 Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 187/477 (39%), Positives = 268/477 (56%), Gaps = 42/477 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++YN+L R++ F +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR +G Sbjct: 2 SLRLYNSLTRQVEAFAPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRHG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC---LAPT 120 + Y RNITD+DDKI A ++ +PI S+IT + + +D L AP Sbjct: 61 -ALKYARNITDVDDKINAAAAEQ--GVPI----SVITDRFAAAYREDMAALGVAGDFAPD 113 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HI QMI + + ++ GHAY A ++F +S +YG SRR +E G RV Sbjct: 114 IEPTATGHIAQMIAMCERLVAEGHAYAAEGHVLFSVASFADYGRLSRRDTEEMLAGARVE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW+SPWGRGRPGWHIECSAM+ +LG+ DIH GG+DL Sbjct: 174 VAPYKRDPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAEAHLGQTIDIHAGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN +++L+ R Sbjct: 234 QFPHHENEIAQSQCAHGGAPFARYWLHNGMLNFGGAKMSKSLGNIEKVHDLV-------R 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------TSKGIIDPAVLSA 354 + P +R A++ HYR+P++++ + ++ L + T + +I + +A Sbjct: 287 AHPPEALRYALISAHYRQPLEWSDALVEQSVRTLDRLYGTLRDLADIEASPVIPAEIEAA 346 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL--------LPIFNASAHILGIEVCKEHLNKNIS 406 L +DLNT A+ L ++A E+ K D + A L + + N+ IS Sbjct: 347 LDDDLNTPLALAELARIAGEARKATDASERARLKSGLLGAGLALGLLQQAPEAWFNRGIS 406 Query: 407 ----IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I+ LV ER K + F+ AD +R QL ++G +LED + RWK+ Sbjct: 407 NDDDARIQALVDERGAAKKARDFARADALRDQLAAEGILLEDTP------QGVRWKR 457 >gi|322514668|ref|ZP_08067696.1| cysteine--tRNA ligase [Actinobacillus ureae ATCC 25976] gi|322119366|gb|EFX91475.1| cysteine--tRNA ligase [Actinobacillus ureae ATCC 25976] Length = 459 Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 186/469 (39%), Positives = 268/469 (57%), Gaps = 44/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Y Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + YVRNITD+DDKII+RA + N+ + + + KD L L P +P Sbjct: 61 --LRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNILRPDVEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT HIP+++ +++ +I +GHAY A+++++FD S YG+ SR+ +++ + G RV K Sbjct: 113 RATKHIPEIVAMVEKLIANGHAYVAADDDVMFDVESFKKYGALSRQNLEQLQAGARVEIK 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+F Sbjct: 173 SVKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 233 PHHENEIAQSCCAHSGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVL 352 + +R L HYR +++++ L A L + Q + S+ ++ A Sbjct: 285 ESETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVQVAGSEQYVE-AFK 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 344 AAMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 404 GDANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|317126835|ref|YP_004093117.1| cysteinyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] gi|315471783|gb|ADU28386.1| cysteinyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] Length = 466 Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 186/487 (38%), Positives = 271/487 (55%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK+ FQ I+ + MYVCGPTVY++ HIGNARP +VFD++ R L+Y E Sbjct: 3 IQVYNTLSRKVEPFQPIEEGKVSMYVCGPTVYNYIHIGNARPAVVFDMVRRYLQYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + +P I + + + +DT L PR Sbjct: 62 -VQYISNFTDVDDKIIKAAEEMGEDVPT------IAERFIEAYFEDTAALGVQKADKHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +P++I I +I G+AYE+ ++ F T YG S + ID+ K+G+R+ Sbjct: 115 VTETMPEIIDFIARLIEKGYAYESQGDVYFRTRKFDGYGKLSHQSIDDLKLGSRIEVGDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E W+SPWG GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKSAKEGEIYWDSPWGNGRPGWHIECSAMVKKYLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + +K AN WIHNG++N++ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSESLNG-KKMANYWIHNGYINIDNEKMSKSLGNFILVHDII-------KKYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------STS 343 V+R ++ HYR PI+F+ ++LT A+ L + T + Sbjct: 287 EVVRFFIVNAHYRSPINFSDEQLTSAKSGLERIKTTYLNVKHRLSETANLGEDVEKWTKD 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----NASAHIL 392 G+I L A+ +D N+ +A+ A+ L RE N +L F + +++L Sbjct: 347 MGVIHTRFLEAMDDDFNSANAVAAMFDLIKLGNLYLREDHTNKRVLEYFIKQLDDMSYVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + K+ + + IE L+QER+ K + F+ AD IR L+ + ILED P Sbjct: 407 GLTLNKKE--EILDEEIEVLIQERIDARKNRNFARADEIRDLLKEQNIILED--TPQG-- 460 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 461 --TRWKR 465 >gi|225026000|ref|ZP_03715192.1| hypothetical protein EUBHAL_00238 [Eubacterium hallii DSM 3353] gi|224956650|gb|EEG37859.1| hypothetical protein EUBHAL_00238 [Eubacterium hallii DSM 3353] Length = 464 Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 196/475 (41%), Positives = 262/475 (55%), Gaps = 56/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF + + MYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTLTKQKEEFVPVHEGKVGMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E +P ++ I+ + + KD L TH P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE--GVPASE----ISERFIAECKKDMEGLNIEPATHNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI +I +I G+AYE N + F T NYG S++ +D+ + G R+ Sbjct: 113 ATEEIDGMIAMISTLIEKGYAYEKNGTVYFRTRKFKNYGQLSKKNLDDMRAGIRIAVSDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK EP W SPWG GRPGWHIECS MS Y+G DIH GG DL+FPH Sbjct: 173 KEDAMDFVLWKPKKEGEPAWVSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLVFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C D EK AN W+HN FLN++ +KMSKS GNF T+ E+ E +P Sbjct: 233 HENEIAQSEACND--EKFANYWMHNAFLNIDNKKMSKSAGNFFTVREISE-------KYP 283 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEA----EILLSKWPQ----TSTSKG 345 VIR ML HYR P++F+ ++R+ A +++ P+ K Sbjct: 284 LQVIRFFMLSAHYRSPLNFSDTLVEASKNGLERILTAIDHLREVIAAAPEGELNVEDQKN 343 Query: 346 IIDPAVLSALY-----NDLNTVSAIQALHKL-------ARESTKNH--DLLPIFNASAHI 391 + + L A Y +D NT AI A+ +L A +K + LL I I Sbjct: 344 LEEANALKAKYEAAMEDDFNTADAIAAIFELVKLANVTAESGSKAYAQQLLDIIVQLCDI 403 Query: 392 LGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LGI E +E L+ + IE L++ER K K F+ AD IR L KG ILED Sbjct: 404 LGIITEKKEELLDDD----IEALIEERQAARKAKNFARADEIRDLLADKGIILED 454 >gi|20808681|ref|NP_623852.1| cysteinyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] gi|22257048|sp|Q8R7T3|SYC_THETN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|20517317|gb|AAM25456.1| Cysteinyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] Length = 467 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 195/493 (39%), Positives = 262/493 (53%), Gaps = 66/493 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ R EF+ + + MYVCGPTVY++ HIGNAR IVFD + R L Y Sbjct: 1 MRLYNTMTRTKEEFKPLKDKVVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEY--KGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII RA++E N I + +++ KD L T PR Sbjct: 59 TVNYVQNFTDIDDKIINRAKEE------NTTEKEIAERFIEEYFKDADALGIKRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY + + F+T+ +YG S + IDE G RV Sbjct: 113 ATEHIDDIIEFIKILIDKGYAYVVDGNVYFETAKFKDYGKLSHKNIDELMAGARVEIDEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPLDFALWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ EL E + Sbjct: 233 HENEIAQSEAA-YDQPFSKYWMHIGYLNVNNEKMSKSKGNFFTVRELTE-------KYDP 284 Query: 305 PVIRLAMLMTHYREPIDFTV----------QRLTEAEILLSKWPQTSTSKGIIDPA---- 350 V+RL MLM HYR PI+F++ +RL+ A + L + + + D Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLLDQAKSAYERLSNAVVNLKHLANITKDRELSDEEKDLI 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ + N +L +F + + Sbjct: 345 VKFDEYKKQFEEAMDDDFNTADAISVLFEMAKTANANLSGNSSKKLVEYILEMFLKLSDV 404 Query: 392 LGIEVCKEHLNKNISIAIE-----KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 LG+ KN IE +L++ER K K + AD IR +L+ +G ILED Sbjct: 405 LGLSY------KNAETEIEDEEILRLIEERQKARKEKNWKLADEIRDKLKERGIILED-- 456 Query: 447 NPDNGQRMTRWKQ 459 P+ RWK+ Sbjct: 457 TPEG----VRWKR 465 >gi|15837597|ref|NP_298285.1| cysteinyl-tRNA synthetase [Xylella fastidiosa 9a5c] gi|9105929|gb|AAF83805.1|AE003937_9 cysteinyl-tRNA synthetase [Xylella fastidiosa 9a5c] Length = 474 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 262/473 (55%), Gaps = 51/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +YNTL R++ F+ +DP+ MYVCGPTVY++ HIGNAR +VF VL LLR YG Sbjct: 9 SLHLYNTLHRRVEPFEPLDPACPTMYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG- 67 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + Y RNITD+DDKI A+++ +PI S IT + + +D +L P +P Sbjct: 68 -ALRYARNITDVDDKINTAAQEQ--GVPI----SAITERFCAAYREDMKKLGVEPPDIEP 120 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+PQ+I +I+ +I HAY A ++F +S +YG SRR +E G RV Sbjct: 121 EATAHMPQIIAMIEQLIERQHAYVAMEHVLFAVNSFADYGQLSRRDPEEMLAGARVEIAP 180 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P+DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FP Sbjct: 181 YKRDPSDFVLWKPSSDQLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFP 240 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA A +W+HNG LN EG KMSKS GN T++ L+ P Sbjct: 241 HHENEIAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNIETVHGLVAKH-------P 293 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R A+L HYR+P+D+ T+ RL L+ +P G I+ + Sbjct: 294 PEALRYALLSAHYRKPLDWSEALIAQSVRTLNRLYGTLRDLAAYPAHPFIPGNIE----A 349 Query: 354 ALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVC----------- 397 AL +DLNT A+ L LA E + H A+ L E+ Sbjct: 350 ALDDDLNTPQALAELATLANEARIQLADTTHHAAAEVTAALTRLKAELLGAGLALGLLQQ 409 Query: 398 ------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++ I+ L+ R + + F AD IR QL ++G +LED Sbjct: 410 TPEAWFSQGTNESDETHIQALIDARGAAKQARDFVRADAIRAQLAAEGIVLED 462 >gi|269122241|ref|YP_003310418.1| cysteinyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] gi|268616119|gb|ACZ10487.1| cysteinyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] Length = 465 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 185/473 (39%), Positives = 267/473 (56%), Gaps = 46/473 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K YNTL + EF+ I+P ++MYVCGPTVY++ HIGNARP++VFD+L R R+ Sbjct: 1 MKFYNTLTNQTEEFKPIEPGKVKMYVCGPTVYNYIHIGNARPIVVFDILARYFRH--KNY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I +A +E ++ I + + F++DT +L A +P+ Sbjct: 59 VVEYVQNFTDIDDKMINKANEEGKTV------REIADRYIEAFLEDTKKLNISADIIRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI I+ +I G+AYE N +++FD + YG S +K D+ + G R+ + Sbjct: 113 ATEYIEDMIITIEALIDKGYAYELNGDVLFDVTKYSEYGKLSNQKTDQLEAGARIEVGEN 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK EP W++PWG GRPGWHIEC+AMS Y G FDIHGGG DLIFPH Sbjct: 173 KRNPQDFVLWKNKKKGEPFWKAPWGEGRPGWHIECTAMSHKYFGLNFDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA AN W+HNG++ L+G KMSKS GNF + ++LE +F G Sbjct: 233 HENEIAQARCA-YGGNFANYWLHNGYIQLDGEKMSKSKGNFFLLRDVLE--EFDGN---- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------WPQTSTSKGIIDPAVL 352 V R + THYR+PI+F+ + + A+ L K + I++ ++ Sbjct: 286 -VFRWFLAGTHYRKPINFSKEDMLAAKAALEKINGALLRAKDFIIENNTKYDNILEGSIK 344 Query: 353 S-------ALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGI 394 A+ +DLNT A+ +H+ RE K D + I + A++LGI Sbjct: 345 EFSEKFDQAMEDDLNTPLAVSLIHEFLREINKFIDNYGKSVIIKEAVAVINDRMANVLGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E+ + L S ++ + R K F +D IR +L G L+D K+ Sbjct: 405 ELKESGLEDLSSSLLDLFIYIRKEARSEKNFKLSDLIRDKLSELGIELKDNKD 457 >gi|222053657|ref|YP_002536019.1| cysteinyl-tRNA synthetase [Geobacter sp. FRC-32] gi|254781681|sp|B9LZV4|SYC_GEOSF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221562946|gb|ACM18918.1| cysteinyl-tRNA synthetase [Geobacter sp. FRC-32] Length = 494 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 202/514 (39%), Positives = 269/514 (52%), Gaps = 80/514 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL EF ++P ++MYVCG TVYD HIG+AR +VFDV+YR + + Sbjct: 3 LRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCHLGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKII RA +E + +I+ + ++F +D RL PT QP+ Sbjct: 62 -VTYVRNYTDIDDKIINRANREGVTY------DLISERFIKEFDRDMERLGLKLPTCQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I L+Q +I AY+A ++ F +Y S R +++ + G R+ Sbjct: 115 ATEHIDEIISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG FDIHGGG DLIFPH Sbjct: 175 KRHPMDFALWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + N W+HNGF+N+ KMSKS GNF TI E+L+ + Sbjct: 235 HENEIAQSEAATG-KPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLD-------RYDN 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------WPQTSTSKGIIDPAVL 352 V+R +L HYR PIDF+ Q LTEAE L + + +D + L Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLTEAEAGLERIYKALAAVEETLAAGNGCTGAPVDASSL 346 Query: 353 S-------------------ALYNDLNTVSAIQALHKLAR-------ESTKNHD----LL 382 + A+ +D NT A+ + L R E+ D L Sbjct: 347 NEAEGELFDKTTSISARFGEAMDDDFNTALAMAHVFDLVRCVNRVLSETAGASDNICSLC 406 Query: 383 PIFNAS----AHILGI---------EVCKEHLNKNISIA---IEKLVQERLILLKMKKFS 426 + A A +LGI E K N+ IA IE+L+ ER K K F Sbjct: 407 TLIKAEVAKIAGVLGIFSSKPASFLERLKSRKAGNLDIAVDEIERLIAERTAARKAKDFK 466 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +D IR QL +K +L D Q+ T W K Sbjct: 467 RSDEIRDQLAAKNIVLLD------SQQGTTWSVK 494 >gi|254360582|ref|ZP_04976731.1| cysteine--tRNA ligase [Mannheimia haemolytica PHL213] gi|153091122|gb|EDN73127.1| cysteine--tRNA ligase [Mannheimia haemolytica PHL213] Length = 458 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 189/466 (40%), Positives = 263/466 (56%), Gaps = 39/466 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDELVDRMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIID----PAVLSAL 355 A +R L HYR +D+++ L A E L + S I A +A+ Sbjct: 286 AESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIGEHYVEAFKTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D NT A+ L ++ARE K + L A +LG+ K Sbjct: 346 DDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGLLEQDPDAFLKGDA 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 406 NDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTPN 451 >gi|148266184|ref|YP_001232890.1| cysteinyl-tRNA synthetase [Geobacter uraniireducens Rf4] gi|189082065|sp|A5G949|SYC_GEOUR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146399684|gb|ABQ28317.1| cysteinyl-tRNA synthetase [Geobacter uraniireducens Rf4] Length = 494 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 197/500 (39%), Positives = 265/500 (53%), Gaps = 78/500 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +F I+P ++MYVCG TVYD HIG+AR +VFDV+YR LR E Sbjct: 3 LRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRSLGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TDIDDKII RA +E A I+ + ++F +D +L L PT QP+ Sbjct: 62 -VNYVRNYTDIDDKIINRANREGV------AYDAISERFIKEFDRDMAQLGLLLPTSQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I L+Q +I G AY+ ++ F Y S+R +++ + G R+ Sbjct: 115 ATEHIPEIITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP WESPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFVLWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+L+ + + Sbjct: 235 HENEIAQSEAASG-KPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEVLD-------KYDS 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKGIIDPA 350 V+R +L HYR P+DF+ Q LTEAE L+ P T + ID + Sbjct: 287 EVLRFFLLSAHYRSPLDFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEE--IDAS 344 Query: 351 VLS-------------------ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI 384 L A+ +D NT A+ + L R E+ + + L Sbjct: 345 SLGEAERELFDKSGSLPLRFREAMDDDFNTALAMGHIFDLVRCVNRVLSEAKERSNTLSA 404 Query: 385 FNAS--------AHILGIEVC---------KEHLNKNISIA---IEKLVQERLILLKMKK 424 A A +LGI K+ + I+ IE+L+ ER K K Sbjct: 405 LCAQVKANIGKIADVLGIFTSEPASLLTRLKDRKASELDISVEEIERLITERAAARKAKD 464 Query: 425 FSSADYIRKQLESKGFILED 444 F +D IR L K +L D Sbjct: 465 FKRSDEIRDFLLGKNIVLLD 484 >gi|261493400|ref|ZP_05989926.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496665|ref|ZP_05993045.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307868|gb|EEY09191.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311044|gb|EEY12221.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 469 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 189/467 (40%), Positives = 263/467 (56%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 12 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRY--SGY 69 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 70 NLRYVRNITDVDDKIIKRALEN------NETCDELVDRMIAEMHKDFDALNILRPDVEPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 124 ATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 184 IKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 243 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 244 HHENEIAQSCCAHGGDYV-NYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 295 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIID-----PAVLSA 354 A +R L HYR +D+++ L A E L + S I A +A Sbjct: 296 AESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIGGEHYVEAFKTA 355 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ K Sbjct: 356 MDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGLLEQDPDAFLKGD 415 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 416 ANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTPN 462 >gi|126668153|ref|ZP_01739115.1| cysteinyl-tRNA synthetase [Marinobacter sp. ELB17] gi|126627423|gb|EAZ98058.1| cysteinyl-tRNA synthetase [Marinobacter sp. ELB17] Length = 464 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 186/478 (38%), Positives = 268/478 (56%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL +K +F+ I+P + +YVCG TVYD+ H+G+AR ++ FDV+ R LR+ + Sbjct: 2 IRIYNTLSQKKEQFKPIEPGKVGLYVCGMTVYDYCHLGHARVLVAFDVITRYLRHSGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ RA + + + +T + +D RL L+P +PR Sbjct: 61 -VNYVRNITDIDDKILRRADEN------GEVYTCLTERMIAAMHEDEARLGVLSPNAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I+ +I GHAY A+N ++ F SS +YG S++K+++ G RV + Sbjct: 114 ATAFISDMIAMIETLIAGGHAYAADNGDVYFLVSSFADYGKLSKKKLEDLLAGARVDVEQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF LWK + P E W SPWG GRPGWHIECSAM++H LG FDIHGGG DL+FP Sbjct: 174 AKRSPADFALWKAAKPDEVFWPSPWGNGRPGWHIECSAMANHCLGDTFDIHGGGPDLLFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H G + + KMSKS GNF TI E++ET +P Sbjct: 234 HHENEIAQSECATG-HTFVNTWMHAGAIRVNKEKMSKSLGNFFTIREIMET-------YP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDPAVLS 353 A V+R ++ +HYR +D++ L E+ L+K + ++ D + Sbjct: 286 AEVVRYFLVSSHYRSQVDYSEDNLIESGRSLTKLYNALRGVTPLASDAVARTAHDTLFVK 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---------HILGIEVCKEHL--- 401 + +D N A+ LH LA E + A+A +LG+ L Sbjct: 346 RMDDDFNCAGAMATLHALAGEMNQQRRDGDEQAAAASATVLVRLGSVLGLLQQDPELFFQ 405 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 N+ + IE ++Q R K + F+ AD IR +L ++G IL+D + + +R Sbjct: 406 SDSGQGNELSAGQIETMIQSRADARKTRDFAGADQIRDELLARGVILDDSREGTSWRR 463 >gi|224825711|ref|ZP_03698815.1| cysteinyl-tRNA synthetase [Lutiella nitroferrum 2002] gi|224601935|gb|EEG08114.1| cysteinyl-tRNA synthetase [Lutiella nitroferrum 2002] Length = 457 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 189/477 (39%), Positives = 266/477 (55%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ I P MYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 2 LNLYNTLTRQKEVFKPITPGKASMYVCGMTVYDYCHLGHARMVVVFDMVARWLRATGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA + + I +T++ +D L + P +PR Sbjct: 61 -LTYVRNITDIDDKIIKRAAEN------GEPIQALTARFIDAMNEDFDALGVIHPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P MI LI+ +I +G AY A N ++ + P YG S + +++ + G RV Sbjct: 114 ATEHVPGMIALIETLIANGRAYPAPNGDVYYAVREFPGYGKLSGKSLEDLRAGERVEVDV 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W SPWG GRPGWHIECS MS H+LG+ FDIHGGG DL FP Sbjct: 174 NKRDPFDFVLWKAAKPGEPSWPSPWGEGRPGWHIECSVMSEHHLGEHFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEGAHN-HDFVNYWLHNGFIRVDNEKMSKSLGNFFTIREVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A V+R +L HYR P++++ L +A+ L++ + D A+ Sbjct: 286 AEVVRFFILRAHYRSPLNYSDVHLDDAKQSLTRLYTALKNVTATDIAIDWEENDYARRFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLP--IFNASAHILGI--EVCKEHLNKNISI- 407 A+ +D NTV A+ L LA E + + A +LG+ +E L + Sbjct: 346 QAMDDDFNTVEAMAVLFDLAGEVNRGESAAQAGLLKALGAVLGLLQRAPQEFLQGGSTAA 405 Query: 408 -----AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 AIE L+Q R K ++ +D IR +L +KG ILED G + T W++ Sbjct: 406 ELSADAIEALIQARRDARTAKNWAESDRIRDELAAKGVILED------GAQGTTWRR 456 >gi|120554762|ref|YP_959113.1| cysteinyl-tRNA synthetase [Marinobacter aquaeolei VT8] gi|187629847|sp|A1U1Q7|SYC_MARAV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120324611|gb|ABM18926.1| cysteinyl-tRNA synthetase [Marinobacter aquaeolei VT8] Length = 463 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 185/471 (39%), Positives = 264/471 (56%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL ++ F+ ++P +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR+ + Sbjct: 1 MRIYNTLTQQKEAFKTLEPGKVRMYVCGMTVYDYCHLGHARVLVAFDVVTRYLRHRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ RA + + + +T + + +D +L L+P +PR Sbjct: 60 -VHYVRNITDIDDKILRRADEN------GEVYTDLTDRMIRAMHEDEAKLGVLSPNEEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +I +IQ +I GHAY A+N ++ F S P+YG S++K+++ G RV + Sbjct: 113 ATAFIDDIIAMIQKLIAGGHAYAADNGDVYFAVESFPDYGKLSKKKLEDLVAGARVDVQE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF LWK + P E W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 173 AKRSPADFALWKAAKPGEVSWQSPWGEGRPGWHIECSAMSTKCLGDTFDIHGGGPDLLFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + W+H G + + KMSKS GNF TI E+LE +P Sbjct: 233 HHENEIAQSECATG-HTFVHTWMHAGAIRVNKEKMSKSLGNFFTIREILE-------KYP 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------DPAV 351 A V+R ++ +HYR +D++ L EA L+K +GI+ D Sbjct: 285 AEVVRYFLVSSHYRSQVDYSEDNLAEAGRTLTKLYH--ALRGIVPAKEADVAETDHDRRF 342 Query: 352 LSALYNDLNTVSAIQALHKLAREST---KNHDLLPIFNASAHILGIEVCKEHLNKN---- 404 + +D NT AI LH +A + + D ++A ++ + L +N Sbjct: 343 AEVMDDDFNTAGAIAVLHAVANDINHYRREGDEEAAKRSAAVLVRLGAVLGLLQQNPEAF 402 Query: 405 ---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + IE ++Q R K K F+ AD IR L KG IL+D + Sbjct: 403 FQADTGSELTAEDIEAMIQARADARKAKDFAEADRIRDDLLEKGIILDDSR 453 >gi|302872638|ref|YP_003841274.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302575497|gb|ADL43288.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 465 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 189/474 (39%), Positives = 263/474 (55%), Gaps = 54/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF+ ++ + ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLSQTKEEFEPLEKNKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDI+DK+I RA +E ++ + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDIEDKMINRANKEGITV------FELAERFIKEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIPDMIVLIQKLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELVAGARVDLSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWFSPWGEGRPGWHIECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A WIHNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWIHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------WPQTSTS------KGI 346 +RL ML HYR+P++F++ + +AE+ L + +TS+S K + Sbjct: 285 EALRLFMLQAHYRKPLNFSLDLIEQAEVALKRIYTCYENLEFLIQNETSSSENNDKLKTV 344 Query: 347 ID---PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP---------IFNASAHILGI 394 I+ + A+ +DLNT A L ++ RE + + + ILGI Sbjct: 345 IEQLKAKFIEAMEDDLNTAEATGYLFEMVREINTHANFCSKETLTFAKDVLKELCSILGI 404 Query: 395 ----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E++ + I +EK Q R K+K F+ AD IR +L+S G+I+ D Sbjct: 405 LEQYSSKEEYVPQEILDMVEKRNQAR----KLKNFAEADRIRDELKSLGYIVLD 454 >gi|257464496|ref|ZP_05628867.1| cysteinyl-tRNA synthetase [Actinobacillus minor 202] gi|257450156|gb|EEV24199.1| cysteinyl-tRNA synthetase [Actinobacillus minor 202] Length = 459 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 264/467 (56%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ I MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQIGMYVCGVTVYDLCHFGHGRTFVSFDVIVRYLRY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 60 NVRYVRNITDVDDKIIKRALEN------KETCDQLVDRMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVEKLIANGHAYVAEDGDVMFDVESFKQYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKENEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIID------PAVLSA 354 A +R L HYR +D++V+ L A L + + G+ + A +A Sbjct: 286 AESLRYFFLTAHYRSLLDYSVENLDLARSALERLYTSLRGCDVSGVAEGGEHYVEAFKTA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIARELNKLKIEDMAKANGLAVRLKELAGVLGLLEQEPESFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 406 TNSDEAAEIEALIKQRNEAKANKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|311695080|gb|ADP97953.1| cysteinyl-tRNA synthetase [marine bacterium HP15] Length = 462 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 189/471 (40%), Positives = 266/471 (56%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL ++ EF+ I+P +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR+ + Sbjct: 2 IRIYNTLTQQKEEFRPIEPGKVRMYVCGMTVYDYCHLGHARVLVAFDVITRYLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ RA + P ++ +T + + +D RL L+P +PR Sbjct: 61 -VNYVRNITDIDDKILRRADENGE--PYDE----LTDRMIKAMHEDEARLGVLSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I +I +I GHAY A+N ++ F S +YG S++K+++ G RV + Sbjct: 114 ATAYIDEIIAMIHKLIAGGHAYAADNGDVYFAVDSFDDYGKLSKKKLEDLLAGARVDVQE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF LWK + E W SPWG GRPGWHIECSAMS+ LG+ FDIHGGG DL+FP Sbjct: 174 AKRSPADFALWKAAKAGEVSWPSPWGDGRPGWHIECSAMSTCCLGETFDIHGGGPDLLFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H G + + KMSKS GNF TI E++E +P Sbjct: 234 HHENEIAQSECATG-HTFVNTWMHAGAIRVNKEKMSKSLGNFFTIREIME-------KYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------DPAV 351 A V+R ++ +HYR +D++ + L EA L++ +GI+ D Sbjct: 286 AEVVRYFLVSSHYRSQVDYSEENLAEAGRTLTRLYH--ALRGIVPAKAADVPESEHDERF 343 Query: 352 LSALYNDLNTVSAIQALHKLA------RESTKNHDL---LPIFNASAHILGI------EV 396 A+ +D NT AI LH +A R + D I +LG+ Sbjct: 344 AEAMDDDFNTAGAIAVLHAVANEINQHRRDGREDDAKQSAAILVRLGGVLGLLQQDPEAF 403 Query: 397 CKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + +S IE ++Q R K K F+ AD IR +L KG IL+D + Sbjct: 404 FQADTGGELSAEDIEAMIQARADARKAKNFAEADRIRDELLEKGIILDDSR 454 >gi|312880084|ref|ZP_07739884.1| cysteinyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] gi|310783375|gb|EFQ23773.1| cysteinyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] Length = 467 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 188/471 (39%), Positives = 255/471 (54%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +YN L R+ F +P +R YVCGPTVYDF HIGNARP IVFDVL R L + Sbjct: 3 FAVYNDLTRRKEVFVPQNPGEVRFYVCGPTVYDFFHIGNARPFIVFDVLRRYLEHQ--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDK+I RA + S+P + + + +D L T PR Sbjct: 61 TVTYVQNFTDVDDKMIRRAAELGISVPE------LAERFIAAYFEDADALGVRRATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP ++ LIQ I+ GHAY ++ FD S P YG S++ ++E + G RV Sbjct: 115 ATEEIPAILELIQAILDRGHAYAVEGDVYFDVKSYPAYGVLSKQSLEELQSGARVEVDPR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK P EP W+SPWG GRPGWH+ECSAMS +LG+ D HGGG DLIFPH Sbjct: 175 KRHPLDFALWKAQKPGEPAWKSPWGMGRPGWHVECSAMSRRHLGETLDFHGGGCDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNG+L ++ KMSKS GNF+T E K+F P Sbjct: 235 HENEIAQSEAATG-KPFVRYWVHNGYLMIDKEKMSKSLGNFLTARE--ARKRF-----PP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPAV--------- 351 IRL ML HYR PI+F+ + L +A E L + W + + G + Sbjct: 287 LAIRLFMLSAHYRSPINFSEEGLMQATAAQERLRNGWTELEFALGHRSASAEPDGALRRM 346 Query: 352 --------LSALYNDLNTVSAIQALHKLARESTK------NHDLLPIFNASAHILGIE-- 395 L+AL +DLNT AI + + + + DL + A L +E Sbjct: 347 LREGRERFLAALDDDLNTAGAIGVVFDVVKGVNSSLGERPDADLEALGQAKTFFLEVEDI 406 Query: 396 --VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +++ +++L+QER K + F+ AD IR +L ++G +LED Sbjct: 407 LGILGVAPEESLEEDVDRLIQERQAARKGRDFARADAIRDELLARGILLED 457 >gi|310826702|ref|YP_003959059.1| cysteinyl-tRNA synthetase [Eubacterium limosum KIST612] gi|308738436|gb|ADO36096.1| cysteinyl-tRNA synthetase [Eubacterium limosum KIST612] Length = 465 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 188/481 (39%), Positives = 261/481 (54%), Gaps = 67/481 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K F I+ +RMY CGPTVY++ HIGNARP IVFDVL R L Y + Sbjct: 1 MKLYNTLTQKKEAFVPIEEGKVRMYSCGPTVYNYFHIGNARPFIVFDVLRRFLEYIGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII R+ +E + + + K ++ KD L PR Sbjct: 60 -VKFVQNFTDVDDKIINRSIEEGITA------AEVADKYIAEYFKDADALGIRRADVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++H+P++I +I+ + G AY + + + +YG S++ ID+ K G R+ Sbjct: 113 VSDHMPEIIEMIKELEARGLAYNVDGNVYYQVDHFHDYGKLSKQSIDDLKSGARIDVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK+ EP WESPWG+GRPGWHIECSAMS +LG+ DIHGGG DLIFPH Sbjct: 173 KRSPLDFALWKKKKDGEPYWESPWGQGRPGWHIECSAMSRKHLGESIDIHGGGQDLIFPH 232 Query: 245 HENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 HENEIAQS C K AN W+HNG++N+ KMSKS GNF T+ ++ + Sbjct: 233 HENEIAQSEGSCGC----KFANYWVHNGYININNEKMSKSKGNFFTVRDI-------AKH 281 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWPQTSTS---- 343 + V+R+ MLM HYR P++F+ + L +A E LL + S Sbjct: 282 YDLEVVRMFMLMAHYRSPVNFSDELLGQAQNALERLYNAKYQMEYLLENNKSEAASEDEK 341 Query: 344 ----------KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLP 383 KG ID A+ +DLNT AI A+ +L R++ N L Sbjct: 342 TWMDNLAQYKKGFID-----AMNDDLNTADAIAAIFELVRDTNSNLSEASSREAVKAALD 396 Query: 384 IFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 +F ++G+ KE ++ +E L+ +R K K FS AD IR L +KG ILE Sbjct: 397 LFKELTGVIGL-AAKEK-ETDLEAEVEALIAQRQEARKNKDFSLADEIRDALLAKGIILE 454 Query: 444 D 444 D Sbjct: 455 D 455 >gi|307266362|ref|ZP_07547900.1| cysteinyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918598|gb|EFN48834.1| cysteinyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 466 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 195/490 (39%), Positives = 264/490 (53%), Gaps = 60/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R E + ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y G K Sbjct: 1 MKLYNTLSRTKEELEPLNDKIVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKEVAEKYIDEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL+FPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSEAAYE-QPFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPAVLS------- 353 V+RL MLM HYR PI+F++ + +A E LL+ + L+ Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLMEQANSAYERLLNAVANLKHLANVCKDGGLNEEEKKLM 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ S N +L +F + + Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTSNANLSRNSSKKLVEYILDMFLKLSEV 404 Query: 392 LGIEV--CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 LG+ + LN +A L++ER K K + AD IR +L KG ILED P+ Sbjct: 405 LGLSYRGVETELNDEEILA---LIEERQKARKEKNWKLADEIRDRLREKGIILED--TPE 459 Query: 450 NGQRMTRWKQ 459 RWK+ Sbjct: 460 G----VRWKR 465 >gi|255318181|ref|ZP_05359420.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262379610|ref|ZP_06072766.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SH164] gi|255304727|gb|EET83905.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262299067|gb|EEY86980.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SH164] Length = 473 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 195/476 (40%), Positives = 275/476 (57%), Gaps = 53/476 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR E V Sbjct: 6 LYNSEQRKKVEFVPRKAGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWE--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII+RA + + I +T + Q +D RL CLAP PRAT Sbjct: 64 KYVRNITDIDDKIIKRANEN------GETIQALTDRFIQAMNEDAHRLGCLAPDEAPRAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I ++ +G AY A N ++ F YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGKLVDNGSAYPATNGDVYFQVEQFNKYGRLSGRKLDDMQAGASDRVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG+GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 DKKHPFDFVLWKHAKENEPFWNSPWGKGRPGWHIECSAMSTCCLGNHFDIHGGGSDLLFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQSEAATG-EQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID-------PA 350 VIR ++ +HYR P++F+ L EA+ L+++ Q ++ + D Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALTRFYHAFKAYQQQFNEELTDHFSQIHLER 349 Query: 351 VLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI------- 394 +A+ +D NT A+ L +LA+E +N + +F ++ +ILG+ Sbjct: 350 FNAAMCDDFNTAEAMAVLFELAKELNRALKEENAEQAKVFYSTLRHLTNILGLVQHNVDD 409 Query: 395 ----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ +E L + S IE+L+Q+R+ K K F+ AD IR+ L ++G +LED + Sbjct: 410 FLRSDIGQEALGLSES-EIEELIQQRVDAKKAKDFTKADSIRQNLLNQGVVLEDTR 464 >gi|269792622|ref|YP_003317526.1| cysteinyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100257|gb|ACZ19244.1| cysteinyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 468 Score = 332 bits (852), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 195/490 (39%), Positives = 275/490 (56%), Gaps = 62/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++YN L + F ++ +R YVCGPTVYD+ HIGNARP IVFDV+ R L + + Sbjct: 3 FEVYNDLTNRKEPFVPLEEGKVRFYVCGPTVYDYFHIGNARPFIVFDVMRRYLEHLGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDIDDK+I+RA++ + + + + + + +D L T P+ Sbjct: 62 -VTYVQNFTDIDDKMIKRAQE------MGITVKELADRFIEAYYQDADALGIRRATVNPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP +I LI+ +I GHAY+ + ++ FD S P YG ++ ++E + G RV Sbjct: 115 ATEEIPHIIELIELLIQKGHAYQIDGDVYFDVMSYPPYGKLIKQDLEELQSGARVEVDPR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK P EP W+SPWG GRPGWHIECSAM H+LG D HGGG DL+FPH Sbjct: 175 KRHPLDFALWKAQKPGEPAWDSPWGPGRPGWHIECSAMCRHHLGDTIDFHGGGCDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNG+L ++ KMSKS GNF+T +L+ K+F P Sbjct: 235 HENEIAQSEAATG-KPFVRYWVHNGYLMIDKEKMSKSLGNFMTARDLM--KRF-----PP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----W-----------PQTSTSKGIIDP 349 VIRL ML HYR PI+F+ + L +A+ L + W P TS S+ + + Sbjct: 287 LVIRLFMLSAHYRSPINFSEENLRQAQAALERLRNGWAQIRFALDNPPPSTSESRELREQ 346 Query: 350 AVL------SALYNDLNTVSAIQALHKLARESTKNH-------DLLPIFNAS------AH 390 A+ +DLNT A+ A+ L R +T +H DL + AS Sbjct: 347 IARYRDDFHRAMDDDLNTAEALGAVFSLIR-ATNSHLSRGDSPDLAALEEASNFLRDVDR 405 Query: 391 ILG-IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 I+G I + ++ L+++ +E L++ER K + F+ AD IR +L S G +LED P Sbjct: 406 IMGVIGIDEDQLDRD----VEALIEERNAARKARDFAKADAIRDRLSSMGIVLED--TPQ 459 Query: 450 NGQRMTRWKQ 459 TRWK+ Sbjct: 460 G----TRWKR 465 >gi|257126844|ref|YP_003164958.1| cysteinyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] gi|257050783|gb|ACV39967.1| cysteinyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] Length = 483 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 188/491 (38%), Positives = 271/491 (55%), Gaps = 64/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ KI EF+ I+ + ++MYVCGPTVY++ H+GNARP++VFD L R + E Sbjct: 1 MKLYNTMTNKIEEFKTIEENKVKMYVCGPTVYNYIHLGNARPIVVFDTLARYFEHKGME- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII ++ +E S S ++ K + F +D ++L L +P+ Sbjct: 60 -VEFVQNFTDVDDKIINKSMEEGTSA------SEVSEKYIKYFFEDISKLNILESVKRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +IQ +I +G AYE + ++ F+ +YG S +KI+E ++G R+ Sbjct: 113 VTENMSEVIEIIQKLIDNGFAYEKDGDVYFEVKKYKDYGKLSNQKIEELELGARIDVSEI 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+ EP WESPWG+GRPGWHIECSAM+ YLG FDIHGGG DL+FPH Sbjct: 173 KKNPVDFALWKKKKDGEPFWESPWGQGRPGWHIECSAMAKKYLGDTFDIHGGGQDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN W+HNGF+ + G KMSKS GNF + E+LE KF G Sbjct: 233 HENEIAQSKCAYH-GNFANYWLHNGFIQINGDKMSKSLGNFFLLREILE--KFSGN---- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLS------------------------KWPQT 340 VIRL +L THYR+PI+F+ + + + + L K + Sbjct: 286 -VIRLFILSTHYRKPINFSFENMEDTKKALQNIIKSMNKFENIVEKYKNEKIENVKNSEF 344 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST------------------KNHDLL 382 S D A+ D+NT A+ + RE+ K++D L Sbjct: 345 SQKIDEFDKKFEEAMAEDMNTPQALATIFDQIRETNKFISTNESEFSTIYYEIKKSYDSL 404 Query: 383 PIFNASAHILGIEV---CKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLE 436 + + IEV KE +N+ + IE L++ R K F +D IR +L+ Sbjct: 405 KAKIENVFGIAIEVENAVKEEDGENMELTKKLIELLIKLRSEARSEKNFKLSDEIRDELK 464 Query: 437 SKGFILEDYKN 447 G ++D K+ Sbjct: 465 VLGVEIKDNKD 475 >gi|326391118|ref|ZP_08212664.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992817|gb|EGD51263.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 466 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 195/490 (39%), Positives = 264/490 (53%), Gaps = 60/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R E + ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y G K Sbjct: 1 MKLYNTLSRTKEELEPLNDKIVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKEVAEKYIDEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL+FPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSETAYE-QPFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPAVLS------- 353 V+RL MLM HYR PI+F++ + +A E LL+ + L+ Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLMEQANSAYERLLNAVANLKHLANVCKDGGLNEEEKKLM 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ S N +L +F + + Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTSNANLSRNSSKKLVEYILDMFLKLSEV 404 Query: 392 LGIEV--CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 LG+ + LN +A L++ER K K + AD IR +L KG ILED P+ Sbjct: 405 LGLSYRGVETELNDEEILA---LIEERQKARKEKNWKLADEIRDRLREKGIILED--TPE 459 Query: 450 NGQRMTRWKQ 459 RWK+ Sbjct: 460 G----VRWKR 465 >gi|117923730|ref|YP_864347.1| cysteinyl-tRNA synthetase [Magnetococcus sp. MC-1] gi|187629846|sp|A0L4P8|SYC_MAGSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|117607486|gb|ABK42941.1| cysteinyl-tRNA synthetase [Magnetococcus sp. MC-1] Length = 490 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 199/505 (39%), Positives = 266/505 (52%), Gaps = 73/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL RK F + P + MYVCG TVYD++HIG+AR M+VFDV+ R LR + Sbjct: 10 ITIYNTLGRKKEPFVPMIPGKVGMYVCGVTVYDYSHIGHARVMVVFDVIARHLRVTGFD- 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN TDIDDKII+RA + ++I +T + F +D L +P+ Sbjct: 69 -LTYVRNFTDIDDKIIKRANER------GESIQTLTQRYIDAFHQDMAALGVQPADIEPK 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+M+ +I ++ G AY + ++ + NYG S + +DEQ+ G RV + Sbjct: 122 ATEHLPEMMQMIGTLMDKGVAYASGGDVYYAVERFANYGQLSGKVLDEQEAGARVEVDSN 181 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK + P EP W+SPWG GRPGWHIECSAM + YLG FDIHGGG DLIFPH Sbjct: 182 KQNPMDFVLWKGAKPEEPQWDSPWGAGRPGWHIECSAMGTKYLGASFDIHGGGRDLIFPH 241 Query: 245 HENEIAQS--CCADRIEKTANIWIHNGFLNL-----EGRKMSKSNGNFITINELLETKKF 297 HENEIAQ+ C + N WIHNGF+N+ E KMSKS GNF TI +LL Sbjct: 242 HENEIAQTEGCTG---QHAVNYWIHNGFVNVVNEEGESEKMSKSLGNFHTIRDLLAL--- 295 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQ--------------RLTEAEILLSKWPQTSTS 343 +P V+R +L +HYR P+DF+ L A+ LL K P T Sbjct: 296 ----YPGEVLRFFILNSHYRSPLDFSFSLLEAAKAGLDRIYTALRSAQALLGKLPGTPIG 351 Query: 344 KGIIDPA---------VLSALYNDLNTVSAIQALHKLAR------ESTKNHDLLP----I 384 + PA L A+ +D NT AI L + A+ K+ ++ + Sbjct: 352 EPADVPAGAPQDLVENYLKAMDDDFNTPQAIAFLFEAAKMLNTAISEQKDPAVIATWARL 411 Query: 385 FNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQL 435 H LG+ L I AIE L+ ER K ++ +D IR L Sbjct: 412 IRGLGHHLGLAGQDPELWFRSGIGAEQGLQAEAIEALIAERSAARAAKNWAESDRIRDTL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 +G +LED GQ T+W +K Sbjct: 472 AQQGIVLED------GQHGTQWSRK 490 >gi|164686505|ref|ZP_02210533.1| hypothetical protein CLOBAR_00070 [Clostridium bartlettii DSM 16795] gi|164604516|gb|EDQ97981.1| hypothetical protein CLOBAR_00070 [Clostridium bartlettii DSM 16795] Length = 474 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 188/473 (39%), Positives = 261/473 (55%), Gaps = 50/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I+ ++MYVCGPTVY+F HIGNARP I+FD L R L Y + Sbjct: 9 VKLYNTLSRKKEEFKPIEEGKVKMYVCGPTVYNFIHIGNARPFIIFDTLRRYLEYRGYD- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII+R+ +E N + +K +++ D L + P+ Sbjct: 68 -VTFVQNFTDVDDKIIKRSHEE------NITPEEVATKYIKEYFVDADGLGIKRASVHPQ 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I ++ + G+AY N ++ FDT +YG S K +E + G R+ Sbjct: 121 VTDNIEQIIAFVKELEDKGYAYAVNGDVYFDTKKFKDYGKLSGIKQEELEAGARIEVNDQ 180 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW SPWG GRPGWHIECS MS+ YLG+ DIH GG DL FPH Sbjct: 181 KRHPMDFVLWKAKKEGEPGWASPWGEGRPGWHIECSVMSNRYLGETIDIHAGGQDLKFPH 240 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + +N W+HN ++N+ KMSKS GNF T+ E+ E + Sbjct: 241 HENEIAQSE-ARSGKNFSNYWLHNEYINVNNEKMSKSLGNFFTVREISEI-------YDL 292 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVL- 352 V+RL ML THYR PI+F+ + L +++ L + SK + A L Sbjct: 293 EVVRLFMLSTHYRNPINFSDEILNQSKAGLERLYNAKEKAEFTINNLEDSKMTEEEAKLQ 352 Query: 353 -----------SALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 A+ +D+NT A+ A+ +LA+ N L FN + Sbjct: 353 DELASFRQKFIDAMDDDVNTADAVSAIFELAKFMNSNITENSSKEFAQKALDEFNELTGV 412 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L I V K+ + IEKL+++R K K F AD IR+QL KG +LED Sbjct: 413 LNI-VNKDKKEDILDEEIEKLIEQRTEAKKNKNFQLADEIRQQLLDKGIVLED 464 >gi|254294732|ref|YP_003060755.1| cysteinyl-tRNA synthetase [Hirschia baltica ATCC 49814] gi|254043263|gb|ACT60058.1| cysteinyl-tRNA synthetase [Hirschia baltica ATCC 49814] Length = 461 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 190/467 (40%), Positives = 265/467 (56%), Gaps = 45/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ N+L RK F D + MYVCGPTVY +AHIGN RP +VFD+LYRLLR YG++ Sbjct: 3 IKLTNSLTRKKEVFIPQDEERVTMYVCGPTVYSYAHIGNFRPPVVFDILYRLLRSKYGDE 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y N+TD+DDKII+ + + IS IT K T+ +++D+ L L P +P Sbjct: 63 AVLYASNLTDVDDKIIKASNDS------GEPISAITEKFTKAYLEDSAALNILEPDFRPT 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 A HIPQMI +++ + +AY + + F S+ +YG S R +D+ G RV + Sbjct: 117 AVAHIPQMIEMMKKLERKKYAYRTESGLWFHVKSMEDYGKLSGRNLDDMLAGARVDVESE 176 Query: 185 KKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK + P EP W+SPWGRGRPGWHIECSAM LGK DIHGGG+DL Sbjct: 177 KRDPADFALWKVAKPGEPEDAIWDSPWGRGRPGWHIECSAMIEAVLGKTIDIHGGGIDLQ 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E A+ W+HNGFL++E KMSKS GN +E+L+ Sbjct: 237 FPHHENEIAQSECA-HGEIMAHYWLHNGFLDIESEKMSKSIGNVKIPHEMLKETH----- 290 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKGIIDPAVLS 353 V+R+A+L YR+P+D+T L + + L + W D AV+ Sbjct: 291 --GEVLRMALLSAQYRQPLDWTQALLDQCKATLDRAYGALRRVWDFADIE--YEDIAVIH 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLP-----------IFNASAHILGI-----EVC 397 AL +DLNT A+ L +++ E+ + D IF + +LG+ E Sbjct: 347 ALCDDLNTPQALAELSRISGEANRAADAGDQEAMAQARADLIF--AGDMLGLLQLTPEEW 404 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ + + + I+ LVQ RL K ++ AD IR +L ++G + D Sbjct: 405 EKGDDGDDAARIDLLVQARLDARANKDWAEADRIRDELAAEGIEIMD 451 >gi|327399102|ref|YP_004339971.1| cysteinyl-tRNA synthetase [Hippea maritima DSM 10411] gi|327181731|gb|AEA33912.1| cysteinyl-tRNA synthetase [Hippea maritima DSM 10411] Length = 474 Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 197/494 (39%), Positives = 272/494 (55%), Gaps = 60/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +++ EF+ I + MYVCG TVYD HIG+AR + FDV+YR L++ + Sbjct: 2 LKIYNTLGKRLEEFKPIKNGKVGMYVCGVTVYDNCHIGHARSAVAFDVMYRYLKFKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII RA +E + N+ I + ++ KD RL P +P+ Sbjct: 61 -VTFVKNFTDVDDKIINRANEE--GVSCNE----IAQRYIGEYYKDMYRLNIAKPEVEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I L++ + G+AYE N ++ + +YG S + IDE K G RV Sbjct: 114 ATEHINEIIELVRKLQDMGYAYEVNGDVYYRVEKFKDYGKLSGKNIDELKSGARVEINDK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWKRS EP W+SPWG GRPGWHIECSAMS YLG+ FDIHGGG DLIFPH Sbjct: 174 KENPLDFALWKRSKENEPKWKSPWGEGRPGWHIECSAMSMKYLGESFDIHGGGEDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A WIHNGF+ + KMSKS GNF TI ++L KK+ G++ Sbjct: 234 HENEIAQSEAATG-KPFARYWIHNGFVRINKEKMSKSLGNFFTIKDIL--KKYDGQT--- 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSK-GIIDPAV----- 351 +R +L+THYR PIDF+ + L A+ L+++ T K G +D + Sbjct: 288 --LRYFLLLTHYRSPIDFSFEGLDAAKEALNRYYNFIQRLEDTEFEKNGKVDELLEKRLK 345 Query: 352 ------LSALYNDLNTVSAIQALHKLARESTKNHD---------------LLPIFNASAH 390 A+ D N AI + + + + D L N Sbjct: 346 DLLARFEEAMDEDFNAPKAIGEVFSVIKTFNQYLDSITEGDKPKKAYKETFLESMNKIKS 405 Query: 391 ILGI---EVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LG+ + + I + +E+ +++R + K K + +AD IR +L KG ILED K Sbjct: 406 VLGVFDTSSASWFIPEGIDVDWVEERIKQRALARKNKDYETADKIRDELNGKGIILEDAK 465 Query: 447 NPDNGQRMTRWKQK 460 TRWK K Sbjct: 466 ------EYTRWKVK 473 >gi|307256969|ref|ZP_07538746.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864544|gb|EFM96450.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 459 Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 184/469 (39%), Positives = 266/469 (56%), Gaps = 44/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Y Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + YVRNITD+DDKII+RA + N+ + + + KD L L P +P Sbjct: 61 --LRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNILRPDVEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 113 RATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIK 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+F Sbjct: 173 SVKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 233 PHHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVL 352 + +R L HYR +++++ L A L + + + + ++ A Sbjct: 285 ESETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFK 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 344 AAMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVCLKELAAVLGLLYQDPEAFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 404 GDANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|229825688|ref|ZP_04451757.1| hypothetical protein GCWU000182_01051 [Abiotrophia defectiva ATCC 49176] gi|229790251|gb|EEP26365.1| hypothetical protein GCWU000182_01051 [Abiotrophia defectiva ATCC 49176] Length = 465 Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 196/483 (40%), Positives = 265/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF ++P ++MYVCGPTVY+F HIGNARP+I+FD + R Y + Sbjct: 1 MKIHNTLTNKEEEFIPLEPGKVKMYVCGPTVYNFMHIGNARPIIIFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E S II +K D L L T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANEEGVSSTEISERYIIEAKT------DMEGLNVLPATKNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI +I+ +I GHAY N + F T S YG S + ID+ + G R+ Sbjct: 113 ATEEIDGMIEMIEELIKKGHAYAKNGSVYFRTRSFEEYGKLSNKNIDDLEAGARIAVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EP W SPWG GRPGWHIECS MS YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFVLWKPKKEGEPFWVSPWGEGRPGWHIECSVMSKKYLGEQIDIHAGGEDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A W+HNG+L + KMSKS GNFITI ++ + + Sbjct: 233 HENEIAQSEAAND-KDFAKYWMHNGYLRINNEKMSKSLGNFITIRDV-------SKEYDL 284 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEA----EILLSKWPQ---TSTSKGII 347 V+R ML HYR PI+F+ ++R+T A + LL T K ++ Sbjct: 285 GVLRFFMLGAHYRGPINFSHELMEAAKTGLERITNAVANLDFLLESANDRSLTEAEKEVL 344 Query: 348 DPAVL------SALYNDLNTVSAIQALHKLAR--------ESTKN--HDLLPIFNASAHI 391 D A+ +A+ D NT A+ A+ L + ES+ ++ + + + Sbjct: 345 DKALAYKADFEAAMDADFNTADAVTAVFNLVKLANSEINTESSSELIKEVRGLIVILSDV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG++V KE + + IE L++ER K K F+ AD IR+ L SKG +LED + Sbjct: 405 LGVKVVKE--KEILDEEIEALIKERTEARKSKNFARADEIREILTSKGIVLEDTREGVKW 462 Query: 452 QRM 454 +RM Sbjct: 463 KRM 465 >gi|118578479|ref|YP_899729.1| cysteinyl-tRNA synthetase [Pelobacter propionicus DSM 2379] gi|171704442|sp|A1AK01|SYC_PELPD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118501189|gb|ABK97671.1| cysteinyl-tRNA synthetase [Pelobacter propionicus DSM 2379] Length = 493 Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 193/497 (38%), Positives = 258/497 (51%), Gaps = 73/497 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + P MYVCG TVYD+ HIG+AR +VFDV+YR L Y Sbjct: 3 LRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGY--SGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKII RA QE + I+ + + F +D RL PT +P+ Sbjct: 61 AVTYVRNFTDIDDKIINRANQEGVDY------TTISERYIEAFNQDMARLGLAKPTVEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+ +I +I+ +I GHAYE++ ++ + S P+Y S R +++ G RV Sbjct: 115 ATDHMGGIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK S P EP W+SPWG GRPGWHIECSAMS YLGK FDIHGGG DL+FPH Sbjct: 175 KRNPMDFALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + W+HNGF+N+ KMSKS GNF TI E+LE + Sbjct: 235 HENEIAQSEAANGCQ-FVRYWMHNGFVNINSEKMSKSLGNFFTIREVLE-------QYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------WPQTSTSKGIID 348 +R +L HYR PIDF+ Q L +A+ L + P + Sbjct: 287 ETLRFFILSAHYRSPIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPVEGAPLP 346 Query: 349 PA--------------VLSALYNDLNTVSAIQALHKLARESTK----NHDLLP------- 383 PA A+ +D NT A+ L + R + + + D P Sbjct: 347 PAGAELHEKLQSLISRFREAMDDDFNTAQALGVLFEAVRATNRFMAESGDQTPATLALLG 406 Query: 384 ----IFNASAHILG---------IEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSS 427 +F + +LG +E K+ + + I+ IE+L+ ER + F Sbjct: 407 QVRRLFAETGDVLGLFTSQPAAWLESIKQAKSDQMEISPQEIEQLIAERAAARTNRDFKR 466 Query: 428 ADYIRKQLESKGFILED 444 D IR L KG L D Sbjct: 467 GDEIRDLLLQKGIQLLD 483 >gi|312135922|ref|YP_004003260.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] gi|311775973|gb|ADQ05460.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] Length = 465 Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 188/470 (40%), Positives = 259/470 (55%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEQGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDI+DK+I RA +E ++ + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDIEDKMINRANKEGITV------FELAERFIKEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIPDMITLIQKLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDLSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWH+ECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWLSPWGEGRPGWHVECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------PQTSTSKGI 346 +RL ML HYR+P++F++ + +AE L + ST K Sbjct: 285 EALRLFMLQAHYRKPLNFSLDLIEQAESALKRIYKCYENLEYLIRNETGSNSSNSTLKAS 344 Query: 347 IDP---AVLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI 394 ++ + A+ +DLNT A L ++ RE +T + D+L + + ILGI Sbjct: 345 LEQFKIKFIDAMEDDLNTAEATGYLFEMVREINTHANTCSKDVLILARDTLKELCGILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E I + I +LV++R K K F+ AD IR +L+S G+I+ D Sbjct: 405 LEQYEQKEDEIPLEILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLD 454 >gi|58584937|ref|YP_198510.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311609|sp|Q5GRV6|SYC_WOLTR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58419253|gb|AAW71268.1| Cysteinyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 433 Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 190/452 (42%), Positives = 265/452 (58%), Gaps = 41/452 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVYD AHIGNAR ++V+DVL++LL++ YG+ TYVRNITDIDDKII A ++ Sbjct: 1 MYVCGPTVYDTAHIGNARSIVVYDVLFQLLKFCYGK--ATYVRNITDIDDKIINAANEKD 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 SI I++ T+ F +D + C+ PTH+P+A +I +I LI+ ++ GHAYE Sbjct: 59 SSI------ESISTYYTRAFHEDMRSINCVEPTHEPKAAENIKYIIELIEYLLQSGHAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRST----PMEPG 203 +N I F S P YG+ S +KIDE + G+RV +KK+P DF+LWK + + Sbjct: 113 SNKHIYFSIESYPEYGALSGKKIDELEHGSRVEVGENKKHPGDFVLWKPANDTDYKLSSY 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL FPHHENEIAQ+ A A Sbjct: 173 WNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQNKSAFAGSMFAK 232 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNG L + KMSKS N + + +LL++ G VIR A+ THYR+P+D+T Sbjct: 233 YWVHNGSLTVNKEKMSKSLFNIVKVRDLLDSGIKG------EVIRYALFKTHYRKPLDWT 286 Query: 324 VQRLTEAEILLSKWPQ-------TSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLARE 374 ++E++ L+K+ + S K ++ + + L NDLN A+ LH++A + Sbjct: 287 ESVISESQETLNKFYRLLRGIDVASIEKSDVEVSRDFIETLKNDLNIPEALAILHEMATK 346 Query: 375 STKNHD------LLPIFNASAHILGI--EVCKEHLNKNISI-AIEKLVQERLILLKMKKF 425 K ++ L F SA +G+ +E IS I++L+ R + + K + Sbjct: 347 INKTNNENEKLKLTESFIKSARFIGLLESSYQEWFTAGISYQEIKRLIDLRKVAKQNKDY 406 Query: 426 SSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +AD IR QL+ G + DN T W Sbjct: 407 DAADKIRDQLKQMGVTI-----SDNEDGTTTW 433 >gi|257466691|ref|ZP_05631002.1| cysteinyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|315917843|ref|ZP_07914083.1| cysteinyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|313691718|gb|EFS28553.1| cysteinyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] Length = 473 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 195/493 (39%), Positives = 278/493 (56%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + F + MYVCGPTVY++ HIGNARP IVFD + R Y G K Sbjct: 2 IKIYNTLSASLDTFTPRKEKEVSMYVCGPTVYNYIHIGNARPAIVFDTVRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I+RA +E ++ + + Q +++D L +P Sbjct: 61 -VTYVQNFTDVDDKMIKRANEEGTTV------EDVAHRYIQAYLEDMKSLHIKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI +IQN+I GHAYE+N ++ F ++ YG+ S++KI++ + G R+ Sbjct: 114 KATEHIQEMIDMIQNLIDKGHAYESNGDVYFRVATYHQEYGALSKQKIEDLQSGARIEVT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG GRPGWHIECSAMS+ Y G FDIHGGG DLIF Sbjct: 174 EIKESPLDFALWKASKPGEPSWKSPWGEGRPGWHIECSAMSNKYFGDSFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ AN W+HNG++N++G KMSKS GNF+ + ++L K F G+ Sbjct: 234 PHHENEIAQSKCSCG-GSFANYWMHNGYINIDGVKMSKSLGNFVLLRDIL--KHFSGK-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGI-- 346 VIR ML HYR+P++F+ L++A+I L + + S G+ Sbjct: 289 ---VIRFFMLSAHYRKPMNFSDAELSQAKIALERIENSLIRANEISETSIALEGSAGVEL 345 Query: 347 ------IDPAVLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASA----- 389 + A+ D NT AI + +L RE S+ N + I +A Sbjct: 346 KKALEDTKEKFIEAMDEDFNTAQAIGVIFELVRELNKTLDSSYNQEAYVIVKETADYLYH 405 Query: 390 ---HILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGIEV E +N+++ +E +++ R K ++ +D IR +L G ++D Sbjct: 406 ILYDVLGIEVEVETKVENLTVDLVEFILELRREARAEKNWALSDRIRDRLAELGIQIKD- 464 Query: 446 KNPDNGQRMTRWK 458 G+ T W+ Sbjct: 465 -----GKDSTTWR 472 >gi|257452930|ref|ZP_05618229.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|317059471|ref|ZP_07923956.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|313685147|gb|EFS21982.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] Length = 473 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 196/493 (39%), Positives = 279/493 (56%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + F + MYVCGPTVY++ HIGNARP IVFD + R Y G K Sbjct: 2 IKIYNTLSASLDTFTPRKEKEVSMYVCGPTVYNYIHIGNARPAIVFDTVRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I+RA +E ++ + + Q +++D L +P Sbjct: 61 -VTYVQNFTDVDDKMIKRANEEGTTV------EDVAHRYIQAYLEDMKSLHIKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI +IQN+I GHAYE+N ++ F ++ YG+ S++KI++ + G R+ Sbjct: 114 KATEHIQEMIDMIQNLIDKGHAYESNGDVYFRVATYHQEYGALSKQKIEDLQSGARIEVT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG GRPGWHIECSAMS+ Y G FDIHGGG DLIF Sbjct: 174 EIKESPLDFALWKASKPGEPSWKSPWGEGRPGWHIECSAMSNKYFGNSFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ AN W+HNG++N++G KMSKS GNF+ + ++L K F G+ Sbjct: 234 PHHENEIAQSKCSCG-GSFANYWMHNGYINIDGVKMSKSLGNFVLLRDIL--KHFSGK-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPA---- 350 VIR ML HYR+P++F+ L++A+I L + + TS + A Sbjct: 289 ---VIRFFMLSAHYRKPMNFSDAELSQAKIALERIENSLIRAHEISETSIALEGSAGVEL 345 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASA----- 389 + A+ D NT AI + +L RE S+ N + I +A Sbjct: 346 KKALEDTKGKFIEAMDEDFNTAQAIGVIFELVRELNKTLDSSYNQEAYVIVKETADYLYH 405 Query: 390 ---HILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGIEV E +N+++ +E +++ R K ++ +D IR +L G ++D Sbjct: 406 ILYDVLGIEVEVETKVENLTVDLVEFILELRREARAEKNWALSDRIRDRLAELGIQIKD- 464 Query: 446 KNPDNGQRMTRWK 458 G+ T W+ Sbjct: 465 -----GKDSTTWR 472 >gi|114320961|ref|YP_742644.1| cysteinyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] gi|114227355|gb|ABI57154.1| cysteinyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] Length = 485 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 186/485 (38%), Positives = 270/485 (55%), Gaps = 53/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+N+L ++ F+ I P ++RMYVCG TVYD+ H+G+AR ++VFD++ R LR+ G + Sbjct: 25 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHL-GYR 83 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII RA + + + + +T + + +D L L P H+PR Sbjct: 84 -VTFVRNITDIDDKIIRRAAE------LGEPMGAVTERFIRAMHEDAEALGVLPPDHEPR 136 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I +I+ ++ GHAY A++ ++ F SS P YG S + ++ + G RV Sbjct: 137 ATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDE 196 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGGLDL FP Sbjct: 197 GKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFP 256 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+HNG + + KM+KS GNF T+ E+L + Sbjct: 257 HHENEIAQSECATG-HPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHR------- 308 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVL---- 352 A +RL +L +HYR P+++++ L +A+ + L P+ + DP Sbjct: 309 AEAVRLFLLSSHYRSPLNYSLDGLRQAQGALERLYLALRGLPEAPVPEA--DPQGFRARF 366 Query: 353 -SALYNDLNTVSAIQALHKLARESTK------------NHDLLPIFNASAHILGIE---- 395 +A+ +D NT A+ L +LARE + LL + +L + Sbjct: 367 HAAMDDDFNTPEALAVLFELAREVNRLRQGDDDAGAAAPGALLRVLGGVLGLLQDDPERF 426 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + I+ LV R K + F+ AD IR +L +G ILED G + T Sbjct: 427 LRGGDAGGDEDAEIDALVARRTEARKNRDFAEADRIRDELAERGIILED------GPQGT 480 Query: 456 RWKQK 460 W+++ Sbjct: 481 TWRRE 485 >gi|332982044|ref|YP_004463485.1| cysteinyl-tRNA synthetase [Mahella australiensis 50-1 BON] gi|332699722|gb|AEE96663.1| cysteinyl-tRNA synthetase [Mahella australiensis 50-1 BON] Length = 467 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 181/476 (38%), Positives = 267/476 (56%), Gaps = 56/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F+ ++ + + MYVCGPTVYD+ HIGNARP++VFD L R L Y G K Sbjct: 2 VRLYNTLTRKQEIFEPLNDNTVTMYVCGPTVYDYFHIGNARPLVVFDTLRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I+RA QE ++ + + Q++ D L PR Sbjct: 61 -VKYVQNFTDIDDKMIKRANQEGITV------KELGDRFIQEYFVDAKGLNIRPADVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI MI I+ +I G AY + + FDTS P YG S + +E + G RV Sbjct: 114 ATEHITDMIEFIKKLIDKGVAYVVDGNVYFDTSKFPQYGKLSHQDFNEIEAGARVEVNES 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK P EP W+SPWG GRPGWH+ECS MS YLG DIHGGG DLIFPH Sbjct: 174 KRNPMDFVLWKAQKPGEPAWDSPWGMGRPGWHMECSVMSMKYLGDTIDIHGGGQDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++G+KMSKS GNF T+ ++ + + Sbjct: 234 HENEIAQSESLTG-KPLARFWLHNGYINVDGQKMSKSLGNFFTVRDI-------SKEYDL 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQTSTSKGII 347 +R+ ML++HYR PI+F+ Q L +A+ L++ + + I Sbjct: 286 ETVRIFMLLSHYRSPINFSHQLLEQAKNALARLYNVKFRLEDIKNSSDISAVSEQERAFI 345 Query: 348 DPA------VLSALYNDLNTVSAIQALHKLARE-------------STKNHDLLPIFNAS 388 + + A+ +D+NT SA+ + LA++ +++ D+L Sbjct: 346 NDMPRYRQKFIEAMDDDMNTASAMGVIFDLAKDVNILMADGASAEFASEASDMLKELTG- 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++G+ + K+ + IE+++Q+R + +++AD IR +L++ G +LED Sbjct: 405 --VMGL-LYKDSACSQLDNEIEQMIQKRQQARANRDWATADRIRDELKAMGIVLED 457 >gi|261599941|dbj|BAI45221.1| cysteinyl tRNA synthetase [Beta vulgaris] Length = 582 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 187/496 (37%), Positives = 272/496 (54%), Gaps = 68/496 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +KK + +YNT+ RK F+ + MYVCG T YDF+HIG+AR + FD+LYR L+Y Sbjct: 80 IKKDLWVYNTMSRKKEIFKPKVDGKVGMYVCGVTAYDFSHIGHARAYVTFDILYRYLKYL 139 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + C YVRN TD+DDKII RA E PI+ ++ + +F +D + L CL P+ Sbjct: 140 GYDVC--YVRNFTDVDDKIIARA-NEVGENPIS-----LSRRFCDEFHQDMSYLHCLPPS 191 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR ++H+PQ+I +I+ I+ +G AY + ++ F P+YG S RK+++ + G RV Sbjct: 192 VEPRVSDHMPQIIDMIKQIVDNGFAYGVDGDVYFSVEKFPDYGRLSGRKLEDNRAGERVA 251 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NPADF LWK + EP WESPWG GRPGWHIECSAMSS YLG FDIHGGG+DL Sbjct: 252 IDSRKRNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSSVYLGYSFDIHGGGMDL 311 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEI QSC A E W+HNGF+ + KMSKS GNF TI +++E Sbjct: 312 MFPHHENEIVQSCAA-CCESNIRYWVHNGFVTINSEKMSKSLGNFFTIRQVIEL------ 364 Query: 301 SWPAPVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKW--------- 337 + +RL ++ THYR PI+++ Q L +++ LLS++ Sbjct: 365 -YHPLALRLFLMGTHYRSPINYSDVLLESASERIFYIYQTLQDSQALLSEYGRANLKDSI 423 Query: 338 PQ--------------TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 PQ S S + P VL+AL + L T++ + K + + L Sbjct: 424 PQDIVSCINDLQNSFVISMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKRELRVESLAA 483 Query: 384 IFNASAHIL------------GIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSA 428 + H+L + +E K + + +++ ++ER + K K++ + Sbjct: 484 LEKTIKHVLTALGLMPSSYSEALHQLREKALKRVKFSETEVQQKIEERDMARKYKEYEKS 543 Query: 429 DYIRKQLESKGFILED 444 D IRK+L + G L D Sbjct: 544 DAIRKELAAVGIALMD 559 >gi|160893352|ref|ZP_02074139.1| hypothetical protein CLOL250_00902 [Clostridium sp. L2-50] gi|156865044|gb|EDO58475.1| hypothetical protein CLOL250_00902 [Clostridium sp. L2-50] Length = 468 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 253/478 (52%), Gaps = 54/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R EF I+ + +YVCGPTVYD+ HIGNARPMIVFD L R L Y + Sbjct: 1 MKIFNTLTRTKEEFVPINEGKVGIYVCGPTVYDYIHIGNARPMIVFDTLRRYLTYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E +I+ + + KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANEEGVDS------KVISERFIAETKKDMAAMNVQEATTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------ 178 AT IP MI +I+ +I GHAYE N + F T S +YG S + ID+ + G R Sbjct: 113 ATEEIPDMIEMIKTLIEKGHAYEVNGTVYFRTRSFADYGKLSHKNIDDLESGHRAENHQL 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 V + K++P DF+LWK EP WESPWG GRPGWH+ECS MS Y+G + DIH GG Sbjct: 173 KVSGQDEKEDPLDFVLWKPKKEGEPFWESPWGEGRPGWHLECSVMSKKYIGDIIDIHAGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENEIAQS A+ E A W+HNGFL + KMSKS GNF T+ E+ + Sbjct: 233 EDLIFPHHENEIAQSEAANDKE-FARYWMHNGFLKINNEKMSKSLGNFFTVREIAD---- 287 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQR-----------LTEAEILLSKWPQTSTSKGI 346 +P VIR ML HYR P++F+ LT + L S P + Sbjct: 288 ---KYPLQVIRFFMLSAHYRSPLNFSADLVEASKNGLERILTAVDKLKSLAPADVEGSDV 344 Query: 347 IDPAVL--------SALYNDLNTVSAIQALHKLAREST---------KNHDL-LPIFNAS 388 A L +A+ +DLNT AI + +L + + K DL + Sbjct: 345 SVEAELDGYTKRFETAMDDDLNTADAISVIFELVKYTNINISNDTPKKTVDLAIRTIEKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ILGI E + + IE L+ ER K K F+ AD IR L KG ILED + Sbjct: 405 CDILGI--ITEREEELLDSDIEALINERQEARKAKNFARADEIRNMLSDKGIILEDTR 460 >gi|187631658|sp|Q0A7N3|SYC_ALHEH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 462 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 186/485 (38%), Positives = 270/485 (55%), Gaps = 53/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+N+L ++ F+ I P ++RMYVCG TVYD+ H+G+AR ++VFD++ R LR+ G + Sbjct: 2 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHL-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII RA + + + + +T + + +D L L P H+PR Sbjct: 61 -VTFVRNITDIDDKIIRRAAE------LGEPMGAVTERFIRAMHEDAEALGVLPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I +I+ ++ GHAY A++ ++ F SS P YG S + ++ + G RV Sbjct: 114 ATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGGLDL FP Sbjct: 174 GKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+HNG + + KM+KS GNF T+ E+L + Sbjct: 234 HHENEIAQSECATG-HPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHR------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVL---- 352 A +RL +L +HYR P+++++ L +A+ + L P+ + DP Sbjct: 286 AEAVRLFLLSSHYRSPLNYSLDGLRQAQGALERLYLALRGLPEAPVPEA--DPQGFRARF 343 Query: 353 -SALYNDLNTVSAIQALHKLARESTK------------NHDLLPIFNASAHILGIE---- 395 +A+ +D NT A+ L +LARE + LL + +L + Sbjct: 344 HAAMDDDFNTPEALAVLFELAREVNRLRQGDDDAGAAAPGALLRVLGGVLGLLQDDPERF 403 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + I+ LV R K + F+ AD IR +L +G ILED G + T Sbjct: 404 LRGGDAGGDEDAEIDALVARRTEARKNRDFAEADRIRDELAERGIILED------GPQGT 457 Query: 456 RWKQK 460 W+++ Sbjct: 458 TWRRE 462 >gi|56460141|ref|YP_155422.1| cysteinyl-tRNA synthetase [Idiomarina loihiensis L2TR] gi|61216136|sp|Q5QYP3|SYC_IDILO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56179151|gb|AAV81873.1| Cysteinyl-tRNA synthetase [Idiomarina loihiensis L2TR] Length = 459 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 182/478 (38%), Positives = 277/478 (57%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL RK F+ I P ++ +YVCG T YD+ HIG+AR + FD++ R LR Sbjct: 3 LTVFNTLTRKKQLFEPIQPGHVGIYVCGVTTYDYCHIGHARTYVAFDIVVRYLRKL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + +T + ++ KD L + P +PR Sbjct: 61 SVKYVRNITDLDDKIIKRAAEN------GEDFHQVTERFIREMHKDFDALNLVRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+H+ ++I +I+ +I +G+AYEA N +++FD S+ +YG SR+ +++ + G+RV Sbjct: 115 VTSHMDEIILMIERLIENGNAYEAGNGDVLFDVSTFNDYGKLSRQDLEQLQAGSRVDVDA 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 175 AKQDPLDFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNKKHLGSTFDIHGGGSDLSFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA++ E W+H+G + ++ KMSKS GNF TI +LE + Sbjct: 235 HHENEIAQSCCANQSEYV-KYWMHSGMVQVDNEKMSKSLGNFFTIRSVLE-------QYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTS--KGIIDPAVLS 353 A +R +L +HYR +++T + L +A L + PQT++ + + Sbjct: 287 AETVRYFLLSSHYRSQLNYTQENLDQAHSALERLYTALRDITPQTASEELRSKYWQSFQQ 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------AHILGI--EVCKEHL-- 401 A+ +DLN A+ L ++ARE +N + P A A ++G+ + +E L Sbjct: 347 AMDDDLNAPEAMSVLFEIAREINRNRESAPDTAAQLAHVLLELAEVMGLLQQSPEEFLQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+ +R + K +++AD R +L + G +LED G TRW++ Sbjct: 407 DDDDVAKIEALIAKRNQAREDKDWAAADEARDELTNMGIVLED------GAEGTRWRR 458 >gi|254523152|ref|ZP_05135207.1| cysteinyl-tRNA synthetase [Stenotrophomonas sp. SKA14] gi|219720743|gb|EED39268.1| cysteinyl-tRNA synthetase [Stenotrophomonas sp. SKA14] Length = 458 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 187/479 (39%), Positives = 263/479 (54%), Gaps = 48/479 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N L R++ F +DP+ +YVCGPTVY++ HIGNAR +VF VL LLR +G Sbjct: 3 LRLHNNLTRQLEPFTPLDPACPTLYVCGPTVYNYVHIGNARGPVVFGVLADLLRRRFG-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y RNITD+DDKI AR++ +PI S IT K + +D L + P +P Sbjct: 61 ALRYARNITDVDDKINTAAREQ--GVPI----STITDKFAAAYREDMAALGVVPPDIEPE 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+PQ+I +I+ +I GHAY A ++F +S YG SRR DE G RV + Sbjct: 115 VTAHMPQIITMIEQLIASGHAYAAEGHVLFAVASFDGYGKLSRRDPDEMLAGARVDVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FPH Sbjct: 175 KRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA + A W+HNG LN G KMSKS GN +++L+ R P Sbjct: 235 HENEIAQSECAHGGKIFARFWLHNGMLNFGGAKMSKSLGNIERVHDLV-------RQHPP 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVLSA-LYND 358 +RLA+L HYR+P+D++ + ++ L + T S + PA + A L +D Sbjct: 288 EALRLALLSAHYRQPLDWSDGLIEQSVRTLDRLYGTLRELASIEASAVIPATVEATLDDD 347 Query: 359 LNTVSAIQALH----------------KLARESTKNHDLLPIFNAS-AHILGIEVCKEHL 401 LNT A+ + +L E L + A A G + Sbjct: 348 LNTPQALAEVARIAADARRATDPAEQARLKGELLGAGLALGLLQADPAQWFGTAAGDDGD 407 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I+ L+ ER + + F+ +D IR QL ++G +LED + RW +K Sbjct: 408 DAR----IQGLIDERAAAKQARDFARSDAIRDQLAAEGIVLEDTP------QGVRWSRK 456 >gi|46143889|ref|ZP_00133878.2| COG0215: Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208389|ref|YP_001053614.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20] gi|187629818|sp|A3N0S3|SYC_ACTP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126097181|gb|ABN74009.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 459 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 185/468 (39%), Positives = 267/468 (57%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCKEH 400 A+ +D NT A+ L ++ARE K + L A +LG+ E + Sbjct: 345 AMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQG 404 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N +A IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|261599939|dbj|BAI45220.1| cysteinyl tRNA synthetase [Beta vulgaris] Length = 582 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 187/496 (37%), Positives = 272/496 (54%), Gaps = 68/496 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +KK + +YNT+ RK F+ + MYVCG T YDF+HIG+AR + FD+LYR L+Y Sbjct: 80 IKKDLWVYNTMSRKKEIFKPKVDGKVGMYVCGVTAYDFSHIGHARAYVTFDILYRYLKYL 139 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + C YVRN TD+DDKII RA E PI+ ++ + +F +D + L CL P+ Sbjct: 140 GYDVC--YVRNFTDVDDKIIARA-NEVGENPIS-----LSRRFCDEFHQDMSYLHCLPPS 191 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR ++H+PQ+I +I+ I+ +G AY + ++ F P+YG S RK+++ + G RV Sbjct: 192 VEPRVSDHMPQIIDMIKQIVDNGFAYGVDGDVYFSVEKFPDYGRLSGRKLEDNRAGERVA 251 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NPADF LWK + EP WESPWG GRPGWHIECSAMSS YLG FDIHGGG+DL Sbjct: 252 IDSRKRNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSSVYLGYSFDIHGGGMDL 311 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEI QSC A E W+HNGF+ + KMSKS GNF TI +++E Sbjct: 312 MFPHHENEIVQSCAA-CCESNIRYWVHNGFVTINSEKMSKSLGNFFTIRQVIEL------ 364 Query: 301 SWPAPVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKW--------- 337 + +RL ++ THYR PI+++ Q L +++ LLS++ Sbjct: 365 -YHPLALRLFLMGTHYRSPINYSDVLLESASERIFYIYQTLQDSQALLSEYGRANLKDSI 423 Query: 338 PQ--------------TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 PQ S S + P VL+AL + L T++ + K + + L Sbjct: 424 PQDIVSCINDLQNSFVISMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKRELRVESLAA 483 Query: 384 IFNASAHIL------------GIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSA 428 + H+L + +E K + + +++ ++ER + K K++ + Sbjct: 484 LEKTIKHVLTALGLMPSSYSEALHQLREKALKRVKFSETEVQQKIEERDMARKNKEYEKS 543 Query: 429 DYIRKQLESKGFILED 444 D IRK+L + G L D Sbjct: 544 DAIRKELAAVGIALMD 559 >gi|240949657|ref|ZP_04753992.1| cysteinyl-tRNA synthetase [Actinobacillus minor NM305] gi|240295915|gb|EER46591.1| cysteinyl-tRNA synthetase [Actinobacillus minor NM305] Length = 459 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 261/467 (55%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ I MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQIGMYVCGVTVYDLCHFGHGRTFVSFDVIVRYLRY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 60 NVRYVRNITDVDDKIIKRALEN------KETCDQLVDRMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAEDGDVMFDVESFKQYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKENEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLSA 354 A +R L HYR +D++V+ L A L + + A +A Sbjct: 286 AESLRYFFLTAHYRSLLDYSVENLDLARSALERLYTALRGCDVSGAAEGGEHYVEAFKTA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGLLEQDPESFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 406 TNSDEAAEIEALIKQRNEAKANKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|165976334|ref|YP_001651927.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307261399|ref|ZP_07543074.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|229558613|sp|B0BPJ8|SYC_ACTPJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|165876435|gb|ABY69483.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306869130|gb|EFN00932.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 459 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 185/468 (39%), Positives = 267/468 (57%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCKEH 400 A+ +D NT A+ L ++ARE K + L A +LG+ E + Sbjct: 345 AMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQG 404 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N +A IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|303253060|ref|ZP_07339211.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247903|ref|ZP_07529938.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648092|gb|EFL78297.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855594|gb|EFM87762.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 459 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 185/468 (39%), Positives = 267/468 (57%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCKEH 400 A+ +D NT A+ L ++ARE K + L A +LG+ E + Sbjct: 345 AMDDDFNTPGALAVLFEVAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQG 404 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N +A IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|297545336|ref|YP_003677638.1| cysteinyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843111|gb|ADH61627.1| cysteinyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 466 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 200/491 (40%), Positives = 266/491 (54%), Gaps = 62/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EFQ ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y G K Sbjct: 1 MKLYNTLSRTKEEFQPLNDKVVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKELAEKYIHEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIVKFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWGRGRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGRGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQS-EALYGQQFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ-------------TSTSKGII 347 V+RL MLM HYR PI+F++ + +A E LL+ K I+ Sbjct: 285 EVLRLFMLMAHYRNPINFSLDLMDQANSAYERLLNAMANLKHLLTVCKERELNEEEKRIV 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ + N +L +F + I Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTANINLSGNSSKELVKYILDMFLKLSEI 404 Query: 392 LGI---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 LG+ V + ++ I IEK Q R K K + AD IR +L KG ILED P Sbjct: 405 LGLFYRTVKTDIDDEEILALIEKRQQAR----KEKNWKLADEIRDRLREKGIILED--TP 458 Query: 449 DNGQRMTRWKQ 459 + RWK+ Sbjct: 459 EG----VRWKR 465 >gi|160933144|ref|ZP_02080533.1| hypothetical protein CLOLEP_01987 [Clostridium leptum DSM 753] gi|156868218|gb|EDO61590.1| hypothetical protein CLOLEP_01987 [Clostridium leptum DSM 753] Length = 470 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 188/475 (39%), Positives = 268/475 (56%), Gaps = 51/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I P ++Y CGPTVY+F HIGNARPM VFD+L R L Y G K Sbjct: 1 MKIFNTLTRQKEEFVPIAPGEAKIYACGPTVYNFIHIGNARPMCVFDILRRYLEYR-GMK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII +A +E D +++ + Q++ D L T PR Sbjct: 60 -VTFVQNFTDIDDKIIRKANEEK-----TDYLTV-AERYIQEYKTDARGLNIREATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + Q+I +I +++ G+AY A N ++ F T YG S + ++E + G R+ Sbjct: 113 ATETMEQIIEIISDLVKKGYAYPAENGDVYFRTLKFSGYGKLSHQPLEELEAGARIGVGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM+ YLG DIH GG DLIFP Sbjct: 173 SKEDPMDFALWKAAKPGEPYWDSPWGKGRPGWHIECSAMARTYLGDTIDIHCGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS C + + A+ W+HNG++N++ RKMSKS NF T+ E+ K+FG Sbjct: 233 HHENEIAQSECCNGV-PFAHYWMHNGYINVDNRKMSKSLNNFFTVREV--AKEFGYEP-- 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------ 350 IR M+ +HYR PI+++V L + L + + + ++ A Sbjct: 288 ---IRYLMVASHYRSPINYSVDLLKQCTAALERLYTCRENLEFVVSNAKPGREARDEEIK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNASA 389 A+ +DLNT AI L +LA++ N + L +FN+ A Sbjct: 345 KRLEEYQNRFCEAMDDDLNTADAIAVLFELAKDINTNLSTATNPHKEIAEEALTLFNSLA 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ K+ ++ IE L+Q R+ K K ++ AD IR +L ++ +LED Sbjct: 405 DVLGLLYVKKDTKDSLDEEIENLIQRRVEARKNKNWAEADRIRDELSARHVVLED 459 >gi|237745445|ref|ZP_04575925.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi|229376796|gb|EEO26887.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] Length = 462 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 187/464 (40%), Positives = 266/464 (57%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R F I+P +RMYVCG T+YD+ HIG+AR M+ FDV+YR L+ E Sbjct: 4 LQIYNSLTRSKQVFTPIEPGKVRMYVCGMTIYDYCHIGHARMMMSFDVVYRWLKALGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + ++IS +T++ TQ +DT+ L L P H+PR Sbjct: 63 -VTYVRNITDIDDKIINRAGEN------GESISSLTARFTQYMHEDTSALGILPPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ LI + +G AY++ + ++ + YG S + +D+ + G RV Sbjct: 116 ATEYVPEMLELIAKLEKNGLAYQSEDGDVNYSVRDFRGYGKLSGKSLDDLRAGERVDVNT 175 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W S WG GRPGWHIECSAMSS LG FDIHGGG DL Sbjct: 176 GKRDPLDFVLWKSAKPSEPDEAKWSSRWGAGRPGWHIECSAMSSKLLGDHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++L + Sbjct: 236 QFPHHENEIAQSEGASG-HPFVNYWMHNGFVRVDNEKMSKSLGNFFTIRDVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 ++ A V+R ++ +HYR P++++ L +A L++ + D V Sbjct: 288 NYDAEVLRFFIIRSHYRSPLNYSDAHLDDARSALTRLYTALKDIDVQDKPVDWQEEHAVR 347 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGI--EVCKEHLNKNIS 406 A+ +D NT A+ L +LA E + H ++ A +LG+ ++ L N + Sbjct: 348 FSRAMNDDFNTPEAVAVLFELANEVNRTHSVEVASQLKALGSVLGLLERDPRQFLQGNGT 407 Query: 407 IA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE +Q R K + F+ AD IR +L KG +LED Sbjct: 408 VDENEEKWIEAQIQARREAKKTRDFAKADKIRNELLEKGIVLED 451 >gi|317131764|ref|YP_004091078.1| cysteinyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] gi|315469743|gb|ADU26347.1| cysteinyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] Length = 465 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 181/468 (38%), Positives = 260/468 (55%), Gaps = 46/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF I P R+Y CGPTVY++ H+GNARPM+VFD+L R L Y G K Sbjct: 3 MKIYNTLTREKDEFVPIKPGEARIYACGPTVYNYIHVGNARPMVVFDILRRYLEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +N TD+DDK+I RA +E A++ + K + +D L T PR Sbjct: 62 -VLFAQNFTDVDDKMIRRANEE------GVAVAEVAEKYIAAYREDAAGLHVREATFHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++ LI+ + G+AY ++ ++ F + YG S + +++ + G RV Sbjct: 115 ATENIADILALIRTLEQKGYAYASDGDVYFRAHAFKEYGKLSHQPLEDLEAGARVDVSER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG GRPGWHIECSAM+ H+LG+ DIH GG DLIFPH Sbjct: 175 KEDPVDFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMARHFLGQTIDIHCGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA+ A+ W+HNG++N++ RKMSKS GNF T+ E+ K+G Sbjct: 235 HENEIAQSECANDA-PFAHYWMHNGYINIDNRKMSKSLGNFFTVREV--AAKYGYEP--- 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQTSTSKGII 347 IR ML YR PI+F+ + + ++ L + P S + Sbjct: 289 --IRFLMLSAQYRTPINFSDEIMEQSVAALDRLYRCREALKDALRQAGETPADSAAVSAW 346 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLP----IFNASAHILGIEV 396 +A+ +DLNT A+ L +L + E T D L +F +LG+ Sbjct: 347 QEKFDAAMDDDLNTADALAVLFELVKEINTRVAEGTAGADWLKGAAGLFGTFCDVLGL-- 404 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + + +E L+++R K K F +AD IR +L +KG +L+D Sbjct: 405 LYERKERTLDAEVEVLIEKRRQARKAKDFKTADAIRDELSAKGIVLKD 452 >gi|238022971|ref|ZP_04603397.1| hypothetical protein GCWU000324_02893 [Kingella oralis ATCC 51147] gi|237865779|gb|EEP66917.1| hypothetical protein GCWU000324_02893 [Kingella oralis ATCC 51147] Length = 474 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 183/479 (38%), Positives = 267/479 (55%), Gaps = 57/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F ++P N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 4 LTVYNTLTRQKEPFIPLNPQNVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQH--GY 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I +T++ +D+ L P +P+ Sbjct: 62 PLTYVRNITDIDDKIIARANEN------GETIQQLTARFIAAMNEDSDALGVQRPDVEPK 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI QMI +I+ +I +G AY A N ++ + P YG S + +D+ + G RV Sbjct: 116 ATEHIAQMIAMIEQLIANGKAYSAANGDVYYAVREFPAYGQLSGKSLDDLRAGERVEVDG 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAM G FDIHGGG DL FP Sbjct: 176 FKRDPLDFVLWKAAKPEEPHWQSPWGNGRPGWHIECSAMGGELFGDTFDIHGGGADLQFP 235 Query: 244 HHENEIAQSCCADR--------------IEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 HHENEIAQSC A I+ W+HNGF+ ++ KMSKS GNF TI Sbjct: 236 HHENEIAQSCGAHHGISGEHAPRAAHKTIDSHVKYWLHNGFIRVDNEKMSKSLGNFFTIR 295 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP 349 ++L + + A V+R +L HYR P++++ L +A+ L+ + G + P Sbjct: 296 DVL-------KKYDAEVVRFFILRAHYRSPLNYSDAHLDDAKHSLTS---LYNALGNVAP 345 Query: 350 A--------------VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILG 393 A +A+ +D +TV A+ L +LA+E T++ +L A A +LG Sbjct: 346 APFTLSEHANDYTRRFYAAMDDDFDTVKAVAVLFELAKEVNKTQSAELSGCLKALAGVLG 405 Query: 394 IEVCKEHL--------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + H N + AIE L+ +R + K ++ +D IR +L ++G +L D Sbjct: 406 LLQREPHEFLQSGAPDNGLSADAIEALIAQRNLARANKNWAESDRIRDELAAQGVVLRD 464 >gi|307245827|ref|ZP_07527913.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254800|ref|ZP_07536627.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259241|ref|ZP_07540971.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853529|gb|EFM85748.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862326|gb|EFM94293.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866908|gb|EFM98766.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 459 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 182/468 (38%), Positives = 265/468 (56%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L + P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNIIRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 345 AMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|15602810|ref|NP_245882.1| cysteinyl-tRNA synthetase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431884|sp|P57890|SYC_PASMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|12721267|gb|AAK03029.1| CysS [Pasteurella multocida subsp. multocida str. Pm70] Length = 459 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 195/480 (40%), Positives = 269/480 (56%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD H+G+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLTREKEIFKPIHANKVGMYVCGITVYDLCHVGHGRTFVCFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + N+ + + K + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------NETCNQLVEKMIAEMHKDFDALNVLRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +I+ +I HAY AN +++FD S YG SR+ +++ + G RV Sbjct: 114 ATHHIPEIIAMIEKLIARQHAYVSANGDVMFDVESFKEYGKLSRQNLEQLQAGARVEIVN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL FP Sbjct: 174 VKKNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNHKELGEHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSCCAHS-GRYVNYWIHSGMIMVDREKMSKSLGNFFTLREVLSL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGI-IDPAVLSA 354 A +R +L HYR ++++ + L A L + P ++G A A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLNLAHSALERLYTALRGTDPTAVATEGQNYLAAFREA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI-----EVCKEHL 401 + +D NT AI L ++ARE KN D+L A ILG+ E + Sbjct: 346 MDDDFNTPKAISVLFEIAREINKLKNEDILKANALAARLRELAGILGLLYQDPEQFLQSG 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + N +A IE L+++R K ++SAD R +L G +LED N T W+++ Sbjct: 406 SDNDEVALIEALIKQRNDARAAKDWASADAARNKLAEMGVVLEDNVNG------TTWRKQ 459 >gi|226940330|ref|YP_002795404.1| Syc [Laribacter hongkongensis HLHK9] gi|254781683|sp|C1D7F5|SYC_LARHH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226715257|gb|ACO74395.1| Syc [Laribacter hongkongensis HLHK9] Length = 457 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 188/477 (39%), Positives = 265/477 (55%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ FQ I P + MYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LHLYNTLSRQKERFQPIQPGKVNMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I+++T + +D L P +PR Sbjct: 61 -LTYVRNITDIDDKIIRRAAEN------GEPINVLTQRFIDAMDEDAAALGVQKPNFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +P MI +I+ +I G AY A N ++ + YG S + +D+ + G RV Sbjct: 114 ATQFVPDMISMIEELIGKGRAYAAPNGDVYYAVREFAGYGQLSGKSLDDLRAGERVDVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W SPWG+GRPGWHIECSAM+ HY G FDIHGGG DL FP Sbjct: 174 NKRDPMDFVLWKAAKPGEPAWPSPWGQGRPGWHIECSAMNEHYFGPHFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A K N W+HNGF+ ++ KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEGAHDC-KFVNYWMHNGFIRVDNEKMSKSLGNFFTIREVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A V+R +L HYR P++++ L +A LS+ + D A+ Sbjct: 286 AEVVRFFILRAHYRSPLNYSDAHLEDARSALSRLYTALKNVPAADVALDWEANDYARRFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIE-------VCKEHLNK 403 +A+ +D NTV A+ L +LA E+ K+ +L +LG+ + L Sbjct: 346 AAMDDDFNTVEAVAVLFELAGEANKSRSAELAGWLKTLGGVLGLLQRDPVDFLQGGSLEG 405 Query: 404 NISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IS +E+L+ R K ++ +D IR +L ++G +LED G T W++ Sbjct: 406 EISADEVEQLIAARKAARAGKDWAESDRIRDELIARGIVLED------GAGGTTWRR 456 >gi|329890424|ref|ZP_08268767.1| cysteinyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] gi|328845725|gb|EGF95289.1| cysteinyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] Length = 468 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 185/484 (38%), Positives = 268/484 (55%), Gaps = 47/484 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I++TL R+ F+ DP+ + +YVCGPTVYD+AHIGNARP +VFDVL RLLR YG Sbjct: 3 LHIHDTLRREKRLFEPRDPNRVSLYVCGPTVYDYAHIGNARPPVVFDVLVRLLRRTYGAD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI +A +E AI IT++ ++ D L P P Sbjct: 63 KVVYARNVTDVDDKINAKAAKE------GVAIGEITARYEAAYLADMGLLNVSPPDIAPH 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I + IQ II G AY A ++FD SS P+YG+ S R +D+ G RV + Sbjct: 117 VTDYIEAITRQIQAIIDAGCAYAAEGHVLFDVSSYPSYGALSGRNLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM LG DIHGGG+DL+FPH Sbjct: 177 KKNPHDFVLWKPSKADEPSWPSPWGEGRPGWHIECSAMIEETLGLPIDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCA-------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 HENEIAQ CA + ++ A W+HNGFL ++ KMSKS GN + +++L++ Sbjct: 237 HENEIAQGVCAHGHAHGEEAHDEYARYWMHNGFLTVDAEKMSKSIGNVLLLHDLVQ---- 292 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGI----IDPAV- 351 + P V+R A+L HYR+P+D+ L ++ L + + + G+ ++P V Sbjct: 293 ---AMPGEVVRWALLSAHYRQPLDWNQTLLEQSRKNLDRLYGALHRAAGVEAAEVEPPVE 349 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHILGIEVCK--- 398 + ++ +DLNT A+ AL L+ + + + A+A ILG+ Sbjct: 350 FMKSIEDDLNTPGAMAALFALSSDIERGMTAGDEGAVAEAKGRLIAAASILGVLQADPAE 409 Query: 399 --EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +++ + +E L+++R K ++ AD IR +L ++ D G + Sbjct: 410 WFSGVDEGLKAEVEGLLEQRAAARTAKNWAEADRIRDRLNELNVVVMD------GPQGAT 463 Query: 457 WKQK 460 W+ K Sbjct: 464 WRMK 467 >gi|303251228|ref|ZP_07337406.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252540|ref|ZP_07534436.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649770|gb|EFL79948.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860132|gb|EFM92149.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 459 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 184/468 (39%), Positives = 267/468 (57%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L + P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNIIRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCKEH 400 A+ +D NT A+ L ++ARE K + L A +LG+ E + Sbjct: 345 AMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQG 404 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N +A IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|307250157|ref|ZP_07532117.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857822|gb|EFM89918.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 459 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 182/468 (38%), Positives = 265/468 (56%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L + P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVDRMIAEMHKDFDDLNIIRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 345 AMDDDFNTPGALAVLFEIAREVNKLKTEGMAKANGLAVRLKELAGVLGLLYQDPEAFLQG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N + IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|34497201|ref|NP_901416.1| cysteinyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] gi|34103057|gb|AAQ59420.1| cysteinyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] Length = 459 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 187/464 (40%), Positives = 265/464 (57%), Gaps = 42/464 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ I+P + MYVCG TVYD HIG+AR + FDV+YR L+ + Sbjct: 4 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYD- 62 Query: 65 CVTYVRNITDIDDKIIERA--RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRNITDI+DKII+RA R P + + I+ +D L L PTH+ Sbjct: 63 -VNYVRNITDIEDKIIKRALERGITPEQLVEETIA--------DMRQDAAALGLLPPTHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+H+ M+ +I+ +I +G AY AN ++ + YG S R +D+ + G RV Sbjct: 114 PRATHHVGGMVAMIEQLIANGKAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS H+LG+ FDIHGGG DL Sbjct: 174 DPNKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQ 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + N W+HNGF+N++G KMSKS GNF TI ++L+ F G Sbjct: 234 FPHHENEIAQSEGA-HGHQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDVLQ--HFDGE- 289 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGI-----IDPA 350 VIR ++ +HYR P+++T L +A+ L++ + TS GI Sbjct: 290 ----VIRFFIVRSHYRSPVNYTDSILNDAKHGLTRLYTALRGIELPTSDGIDWNHAYAAR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D T A+ L +LA E K+ D L + +LG+ + + Sbjct: 346 FKAAMDDDFGTSEAVAVLFELAGEVNKSRDPQLARLLKDLGGVLGLLTRDPEVFLQGGVG 405 Query: 409 --------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E L+Q R K ++ +D IR +L +KG +LED Sbjct: 406 EGELSAEQVEALIQARKDARAAKDWAESDRIRDELTAKGIVLED 449 >gi|54297226|ref|YP_123595.1| cysteinyl-tRNA synthetase [Legionella pneumophila str. Paris] gi|61216143|sp|Q5X5P9|SYC_LEGPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53751011|emb|CAH12422.1| cysteine tRNA synthetase [Legionella pneumophila str. Paris] Length = 456 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 266/474 (56%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLRPGKIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + SI +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASERGVSI------DELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G+AY ++N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGNAYVSDNGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L+ Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLKEHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSK--GIIDPAVLS 353 VIR +L +HYR P++++ + L A+ L + PQT+ SK Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEYWQEQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI------EVCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLQARAERNWAKADQIRADLLSKGIELED------GATGTTWRR 453 >gi|61216275|sp|Q7NX82|SYC_CHRVO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 457 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 187/464 (40%), Positives = 265/464 (57%), Gaps = 42/464 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ I+P + MYVCG TVYD HIG+AR + FDV+YR L+ + Sbjct: 2 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERA--RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRNITDI+DKII+RA R P + + I+ +D L L PTH+ Sbjct: 61 -VNYVRNITDIEDKIIKRALERGITPEQLVEETIA--------DMRQDAAALGLLPPTHE 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+H+ M+ +I+ +I +G AY AN ++ + YG S R +D+ + G RV Sbjct: 112 PRATHHVGGMVAMIEQLIANGKAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEV 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS H+LG+ FDIHGGG DL Sbjct: 172 DPNKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQ 231 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + N W+HNGF+N++G KMSKS GNF TI ++L+ F G Sbjct: 232 FPHHENEIAQSEGA-HGHQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDVLQ--HFDGE- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGI-----IDPA 350 VIR ++ +HYR P+++T L +A+ L++ + TS GI Sbjct: 288 ----VIRFFIVRSHYRSPVNYTDSILNDAKHGLTRLYTALRGIELPTSDGIDWNHAYAAR 343 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D T A+ L +LA E K+ D L + +LG+ + + Sbjct: 344 FKAAMDDDFGTSEAVAVLFELAGEVNKSRDPQLARLLKDLGGVLGLLTRDPEVFLQGGVG 403 Query: 409 --------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E L+Q R K ++ +D IR +L +KG +LED Sbjct: 404 EGELSAEQVEALIQARKDARAAKDWAESDRIRDELTAKGIVLED 447 >gi|312876620|ref|ZP_07736601.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311796573|gb|EFR12921.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 465 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 262/470 (55%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF+ ++ + ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLSQTKEEFEPLEKNKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGITV------FELARRFIEEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFVLWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKGIIDPA 350 +RL ML HYR+P++F++ + +AE+ L+ +S S + A Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSESDDKLKAA 344 Query: 351 V-------LSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASAHILGI-EV 396 + + A+ +DLNT A L ++ RE S L + + GI + Sbjct: 345 IEDLKAKFIEAMEDDLNTAEATGYLFEMVREINTHANSCSKEALTFAKDTLKELCGILGI 404 Query: 397 CKEHLNKNISIAIE--KLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ K +I E +LV++R K+K F+ AD IR +L+S G+I+ D Sbjct: 405 LEQYGAKEEAIPQEILELVEKRNQARKVKNFAEADRIRDELKSLGYIVLD 454 >gi|54294205|ref|YP_126620.1| cysteine tRNA synthetase [Legionella pneumophila str. Lens] gi|61216142|sp|Q5WX29|SYC_LEGPL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53754037|emb|CAH15510.1| cysteine tRNA synthetase [Legionella pneumophila str. Lens] gi|307610020|emb|CBW99553.1| cysteine tRNA synthetase [Legionella pneumophila 130b] Length = 456 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 264/474 (55%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLRPGKIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + SI +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASERDVSI------DELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G+AY N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L+ Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLKEHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSK--GIIDPAVLS 353 VIR +L +HYR P++++ + L A+ L + PQT+ SK Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEYWQEQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI------EVCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLKARAERNWTKADQIRADLLSKGIELED------GATGTTWRR 453 >gi|153871051|ref|ZP_02000318.1| Cysteinyl-tRNA synthetase, class Ia [Beggiatoa sp. PS] gi|152072482|gb|EDN69681.1| Cysteinyl-tRNA synthetase, class Ia [Beggiatoa sp. PS] Length = 463 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 186/468 (39%), Positives = 269/468 (57%), Gaps = 44/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+N+L ++ F I+P +R+YVCG TVYD+ H+G+AR MIVFDV+ R LR E Sbjct: 2 LTIHNSLTKQKDPFTPIEPGKVRLYVCGMTVYDYCHVGHARVMIVFDVVVRYLRSLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I+ +T + Q +DT L + P +PR Sbjct: 61 -VTYVRNITDIDDKIIQRANEN------GEDINQLTDRFIQAMYEDTDALNVIRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP+++ +IQ+++ +AY +N ++ + NYG S + +D+ + G RV Sbjct: 114 ATQSIPEIVAMIQSLLDKNYAYLTDNGDVCYAIQRFENYGQLSGKHLDDLRAGERVEVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECSAMS+H LG FDIHGGG+DL FP Sbjct: 174 SKQHPLDFVLWKTAKPGEPSWESPWGAGRPGWHIECSAMSTHCLGNHFDIHGGGMDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N+W+HNGF+ + KMSKS NF T+ E+LE + Sbjct: 234 HHENEIAQSEGATG-ETFVNVWMHNGFVRINDEKMSKSLNNFFTVREVLE-------RYQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTS--TSKGIIDPAVLSA 354 V+R +L +HYR ++++ Q L A+ I + P T + L+A Sbjct: 286 PEVVRYFILTSHYRSELNYSEQELEAAKQSITRLYIAIRDLPNTDEPCPDDSYNQRFLTA 345 Query: 355 LYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILG------------IEVC 397 + +D NT A+ AL L++E K + +P+ + + ++ Sbjct: 346 MNDDFNTPEALAALFSLSKEINILRRKKVSEAIPLASELRRLGNLLGLLQAKPETFLQGT 405 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +S+ IE+L+ ER+ K + F++AD IR L +KG ILED Sbjct: 406 SQEKEPGLSVTEIEQLIVERIDARKNRDFATADQIRADLTAKGIILED 453 >gi|218508011|ref|ZP_03505889.1| cysteinyl-tRNA synthetase [Rhizobium etli Brasil 5] Length = 245 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 151/240 (62%), Positives = 187/240 (77%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YNTL R+ + F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 6 ELKLYNTLTREKSVFAPIDPKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P +P Sbjct: 66 NHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPNVEP 125 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT++I +MI +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 126 RATDNIEEMIEIIEKLISNGHAYAASGEVLFDTKSMADYGQLSKRPLDEQQAGARVAVDA 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLIFP Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWDSPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLIFP 245 >gi|317472691|ref|ZP_07932006.1| cysteinyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] gi|316899868|gb|EFV21867.1| cysteinyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] Length = 466 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 196/475 (41%), Positives = 261/475 (54%), Gaps = 54/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF + P + MYVCGPTVY++ HIGNARPMI+FD + R Y + Sbjct: 1 MKIYNTLTRKKEEFVPVHPGKVGMYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S + I + ++ KD L THQP+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVSA------TEIAERYIEECKKDMEGLNVKPATHQPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I GHAYE N + F T S YG S++ ID+ + G R V Sbjct: 113 ATEEIDGMIRMIGTLIEKGHAYEVNGTVYFKTRSFDGYGKLSKKNIDDLEAGHRDIKVRG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK E W SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKQDPLDFVLWKPKKEGEIAWPSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS C D E AN W+HNGFLN++ +KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEACND--ECFANYWMHNGFLNIDNQKMSKSAGNFFTVREISE------- 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFT----------VQR-LTEAEILLSKWPQTSTSKGIIDP 349 +P VIR ML HYR P++F+ + R LT +++ + + T+ G + Sbjct: 284 KYPLQVIRFFMLSAHYRNPLNFSDTLVESAKNGLDRILTAIDLVRDQADKPETAAGKEEE 343 Query: 350 AVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNH--DLLPIFNASA 389 A L A+ +D NT A+ A+ +L +ES+ ++ LL Sbjct: 344 ANLEEARKLVGKFEEAMEDDFNTADAVSAIFELVKLANTTVKESSSDYAAKLLETMETLC 403 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGIE +E + I +++ K K F+ AD IR +L KG IL+D Sbjct: 404 GVLGIETKQEEDILDEEIERMIEERQQ--ARKEKDFARADEIRDELLEKGIILKD 456 >gi|260913075|ref|ZP_05919557.1| cysteine-tRNA ligase [Pasteurella dagmatis ATCC 43325] gi|260632662|gb|EEX50831.1| cysteine-tRNA ligase [Pasteurella dagmatis ATCC 43325] Length = 467 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 190/479 (39%), Positives = 267/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F+ I + + MYVCG TVYD H+G+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTREKEIFKPIHANKVGMYVCGITVYDLCHVGHGRTFVCFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + S + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALKNRESC------DQLVDRMVAEMYKDFDMLNVLRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY +N +++F+ S YG SR+ +++ + G RV + Sbjct: 114 ATHHIAEIITLVEKLIQRGHAYVSSNGDVMFNVESFKEYGKLSRQNLEQLQAGARVEIVH 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKPEEPSWDSPWGPGRPGWHIECSAMNYKVLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF T+ ++L + Sbjct: 234 HHENEIAQSCCA-HGNQYVNYWMHSGMIMVDREKMSKSLGNFFTLRDVLNI-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIID-------PAVLSA 354 A +R +L HYR P++++ + L A L + T K I A A Sbjct: 286 AESVRYFLLNAHYRSPLNYSEENLNLAHTALERLYTALRGTDKSAIACGGENYINAFKEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE KN D L A ILG+ E + Sbjct: 346 MNDDFNTPNAVSVLFEIAREVNKLKNEDMEKANSLAARLRELADILGLLYQDPEEFLQSG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 L+ IE L+++R K +++AD R+QL +LED G T W++ Sbjct: 406 LDDEEVKLIESLIKQRNEARAAKDWATADAAREQLSKMKVVLED------GANGTTWRK 458 >gi|253702469|ref|YP_003023658.1| cysteinyl-tRNA synthetase [Geobacter sp. M21] gi|259511834|sp|C6E7P0|SYC_GEOSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|251777319|gb|ACT19900.1| cysteinyl-tRNA synthetase [Geobacter sp. M21] Length = 480 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 200/500 (40%), Positives = 268/500 (53%), Gaps = 66/500 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL EF I+P + MYVCG TVYD HIG+AR +VFD++YR L E Sbjct: 3 LRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLLSKGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKII RA ++ + N+ I+ + ++F D RL PT QP+ Sbjct: 62 -VTYVRNYTDIDDKIINRANRD--GVAYNE----ISERFIKEFDNDMARLMLQLPTFQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I L+Q +I G AY++ +++ + Y S+R +++ + G R+ Sbjct: 115 ATEHIPEIINLVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ +LG+ DIHGGG DLIFPH Sbjct: 175 KEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+LE S+ A Sbjct: 235 HENEIAQSEAASG-KPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILE-------SYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPA-------- 350 V+R +L HYR PIDF+ Q L EAE+ L + + + G PA Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALAGIDERLASGAHTPADADNTEFA 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHIL 392 A+ +D NT A+ L L R T + LL A A +L Sbjct: 347 EKVAGFAGRFGDAMDDDFNTALALGHLFDLVRVINRELPTASTGLLEKVKAEVAKMAAVL 406 Query: 393 GI---------EVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 GI + K+ ++ ++ IE L+ ER K K F D IR L K Sbjct: 407 GICDSVPAAFLQRMKDRKTSDMEMSAEEIETLIAERAEARKAKNFKRGDEIRDLLLEKNI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 467 VLLD------SAQGTTWKVK 480 >gi|167036780|ref|YP_001664358.1| cysteinyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039500|ref|YP_001662485.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|256752501|ref|ZP_05493358.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|300915250|ref|ZP_07132565.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307725174|ref|YP_003904925.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|320115202|ref|YP_004185361.1| cysteinyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229558799|sp|B0KCH9|SYC_THEP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558800|sp|B0K5F6|SYC_THEPX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166853740|gb|ABY92149.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|166855614|gb|ABY94022.1| cysteinyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748636|gb|EEU61683.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|300888974|gb|EFK84121.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307582235|gb|ADN55634.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|319928293|gb|ADV78978.1| cysteinyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 466 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 195/490 (39%), Positives = 265/490 (54%), Gaps = 60/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF+ ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y G K Sbjct: 1 MKLYNTLSRTKEEFEPLNDKIVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K +++ D L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKEVAEKYIEEYFIDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL+FPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSEAA-YGQPFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPAVLS------- 353 V+RL MLM HYR PI+F++ + +A E LL+ + L+ Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLMEQAKSAYERLLNAVANLKHLLTVCKDRELNEEEKRIK 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 A+ +D NT AI L ++++ + N +L IF + I Sbjct: 345 EKFEEYKKEFEDAMDDDFNTADAISVLFEMSKTANTNISGNSSKKLVEYILDIFLKLSEI 404 Query: 392 LGIEV--CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 LG+ + LN +A L++ER K K + AD IR +L KG ILED P+ Sbjct: 405 LGLSYRGVETELNDEEILA---LIEERQKARKEKNWKLADEIRDRLREKGIILED--TPE 459 Query: 450 NGQRMTRWKQ 459 RWK+ Sbjct: 460 G----VRWKR 465 >gi|52841538|ref|YP_095337.1| cysteinyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|61216153|sp|Q5ZVY1|SYC_LEGPH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52628649|gb|AAU27390.1| cysteinyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 456 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 198/476 (41%), Positives = 265/476 (55%), Gaps = 45/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLKPGTIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + SI +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASERGVSI------DELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G+AY N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L+ Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLKEHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDP----AV 351 VIR +L +HYR P++++ + L A+ L + PQT SK +D Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTEDSK--LDEYWQVQF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI------EVCKEHLNK 403 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 344 NQAMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAE 403 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 404 EEKLVIEQLIAERLQARAERNWAKADQIRADLLSKGIELED------GATGTTWRR 453 >gi|254469086|ref|ZP_05082492.1| cysteinyl-tRNA synthetase [beta proteobacterium KB13] gi|207087896|gb|EDZ65179.1| cysteinyl-tRNA synthetase [beta proteobacterium KB13] Length = 453 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 192/466 (41%), Positives = 269/466 (57%), Gaps = 50/466 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 IKI+NT K +F+ I ++++MYVCG TVYD H+G+AR +IVFD++YR L Y Sbjct: 2 IKIFNTFTSKKEKFKPITENHVKMYVCGMTVYDDCHVGHARVLIVFDLIYRWFLNSGYD- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITDIDDKII ++ + N+ +T + +D+ L+ + PT QP Sbjct: 61 --VQYVRNITDIDDKIINKSNDQ--DCKFNE----LTDRYIDSMHEDSKALSVIPPTFQP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT IP MI +I ++ G AY N ++ F+ + +YG S++ +D+ G+RV Sbjct: 113 KATEAIPSMIKMISILVDKGFAYIGKNGDVFFEIAKFKDYGKLSKKNVDDLDAGSRVKID 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KK+ DF+LWK S EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGG DLIF Sbjct: 173 DNKKSFGDFVLWKLSKENEPSWQSPWGNGRPGWHIECSAMSSDILGESFDIHGGGQDLIF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQS C K AN WIHNGF+N++ KMSKS GNF T+ +L KK+ G Sbjct: 233 PHHENEIAQSESCHGH--KMANYWIHNGFVNVDDEKMSKSLGNFFTLKNVL--KKYSGE- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------WPQTSTSKG 345 V+R + +HYR P++++ Q L +A++ + K W + S SK Sbjct: 288 ----VVRFFVYKSHYRSPLNYSDQNLNDAKVAVEKIYIALRPYKCIQVDLDWSKASLSK- 342 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGIEVC--KEHL 401 + AL +D N+ AI + KL + K N+DL + LG+ +E Sbjct: 343 -----IKDALDDDFNSPKAISIIFKLINQLNKGSNNDLANEIYSVLKALGLMAIPQEEFF 397 Query: 402 NKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ I IEKL+Q+R K + AD +R +++S G +LED Sbjct: 398 TKSSKIDHDHIEKLIQQRAQAKLQKDYQKADELRNEIDSLGVVLED 443 >gi|170717373|ref|YP_001783468.1| cysteinyl-tRNA synthetase [Haemophilus somnus 2336] gi|189082066|sp|B0UVH6|SYC_HAES2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|168825502|gb|ACA30873.1| cysteinyl-tRNA synthetase [Haemophilus somnus 2336] Length = 459 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 265/474 (55%), Gaps = 40/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKIFNTLTREKEVFKPISENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII RA + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIRRALEN------KETCEQLVDRMVVEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY A+N +++FD S YG SR+ + + + G RV Sbjct: 114 ATHHIAEIIALVEKLIARGHAYVADNGDVMFDVESFKEYGKLSRQDLTQLQAGARVEISE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWNSPWGAGRPGWHIECSAMNCKHLGEHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGNRYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIID-------PAVLSA 354 A +R +L HYR ++++ + L A L + T K + A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLDLAHGALERLYTALRGTDKSAVSFGGENFIAQFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI-----EVCKEHL 401 + +D NT +AI L ++ARE KN D L A ILG+ E + Sbjct: 346 MNDDFNTPNAISVLFEMAREINRLKNEDKLLADGLAARLRELASILGLLDQDPEDFLQAG 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + + IA IE+L+++R + K ++ AD R +L + G ILED N ++M Sbjct: 406 SDDAEIAKIEELIKQRNDARQAKDWARADAARNELTTMGVILEDSSNGTMWRKM 459 >gi|218961048|ref|YP_001740823.1| cysteinyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] gi|167729705|emb|CAO80617.1| cysteinyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] Length = 469 Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 187/471 (39%), Positives = 265/471 (56%), Gaps = 50/471 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNT RK EFQ I P + +Y CGPTVY++ HIGNAR I FDV+ R Y E V Sbjct: 3 LYNTQTRKKEEFQPITPGKVGIYACGPTVYNYFHIGNARAFIFFDVVRRYFTYRGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV+NITDIDDKII +A +E N + +++ K T+ F+ DT+ L PT+QP+AT Sbjct: 61 TYVQNITDIDDKIIAQANEE------NISFTLVAEKYTRAFLDDTSALGIKPPTYQPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 + +I I + G+AYE ++ F T ++P+YG S +K +EQ G RV E Y+K+ Sbjct: 115 EVMDDIIAFIAELEKKGYAYEVEGDVYFATENLPSYGCLSGKKTEEQLAGARVMENYNKR 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +PADF LWK+ P EP WESPWG+GRPGWH EC MS YLG+ FDIH GG+DLIFPHHE Sbjct: 175 HPADFTLWKKGKPGEPVWESPWGKGRPGWHTECVVMSQKYLGETFDIHCGGIDLIFPHHE 234 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NE+AQ+ A + AN W+HNGFLN++G KMSKS NF T ++L + A Sbjct: 235 NELAQA-MAYSGKPLANYWMHNGFLNVDGEKMSKSLKNFFTARDILA-------EYDAES 286 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSK-----GI------ 346 IR L HYR PIDF+ + + E++ ++ +P+ + ++ G Sbjct: 287 IRFFFLSKHYRSPIDFSRELMEESQRAVANLYSSLAEINYPENAENRRPTVCGTAQELQN 346 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-----EHL 401 ++ + A+ +D NT AI L +L R+ KN SA I +E+ ++L Sbjct: 347 LEQEFILAMDDDFNTAKAISLLFELNRK-VKNTSATMADRISAAIKMVELGSVLGFFQNL 405 Query: 402 NKNISIAIEKLVQERLILL--------KMKKFSSADYIRKQLESKGFILED 444 + + L ++ + L+ K ++ AD IR L G ++D Sbjct: 406 EAKLKQKMPDLSKDLICLILSYRKEARDKKDWALADKIRNDLAQLGIEIKD 456 >gi|167745717|ref|ZP_02417844.1| hypothetical protein ANACAC_00410 [Anaerostipes caccae DSM 14662] gi|167655029|gb|EDR99158.1| hypothetical protein ANACAC_00410 [Anaerostipes caccae DSM 14662] Length = 466 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 196/475 (41%), Positives = 262/475 (55%), Gaps = 54/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF + P + +YVCGPTVY++ HIGNARPMI+FD + R Y + Sbjct: 1 MKIYNTLTRKKEEFVPVHPGKVGIYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S + I + ++ KD L THQP+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVSA------TEIAERYIEECKKDMEGLNVKPATHQPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I GHAYE N + F T S YG S++ ID+ + G R V Sbjct: 113 ATEEIDGMIRMIGTLIEKGHAYEVNGTVYFKTRSFDGYGKLSKKNIDDLEAGHRDIKVRG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK E W SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKQDPLDFVLWKPKKEGEIAWPSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS C D E AN W+HNGFLN++ +KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEACND--ECFANYWMHNGFLNIDNQKMSKSAGNFFTVREISE------- 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFT----------VQR-LTEAEILLSKWPQTSTSKGIIDP 349 +P VIR ML HYR P++F+ + R LT +++ + + T+ G + Sbjct: 284 KYPLQVIRFFMLSAHYRNPLNFSDTLVESAKNGLDRILTAIDLVRDQADKPETAAGKEEE 343 Query: 350 AVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNH--DLLPIFNASA 389 A L A+ +D NT A+ A+ +L +ES+ ++ LL I Sbjct: 344 ANLEEARKLVGKFEEAMEDDFNTADAVSAIFELVKLANTTVKESSSDYAAKLLEIMETLC 403 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGIE +E + I +++ K K F+ AD IR +L KG IL+D Sbjct: 404 GVLGIETKQEEDILDEEIERMIEERQQ--ARKEKDFARADEIRDELLEKGIILKD 456 >gi|312621501|ref|YP_004023114.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312201968|gb|ADQ45295.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 465 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 192/470 (40%), Positives = 254/470 (54%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGVTV------FELAERFIQEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQTLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQS-EASTGKPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------------KWPQTSTSKGIIDPAV 351 +RL ML HYR+P++F++ + +AE L K TS S AV Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAESALKRIYTCYENLEYLIKNGTTSNSSDSTLKAV 344 Query: 352 L--------SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI 394 L A+ +DLNT A L ++ RE +T + D+L + + ILGI Sbjct: 345 LKELKAKFIDAMEDDLNTAEATGYLFEMVREINTHSNTCSKDVLILARDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E I I +LV++R K K F AD IR L S G+I+ D Sbjct: 405 LEQYEEKKDEIPPEILELVEKRNEARKAKNFLEADRIRDDLRSLGYIVLD 454 >gi|307243392|ref|ZP_07525549.1| cysteine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] gi|306493202|gb|EFM65198.1| cysteine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] Length = 467 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 186/488 (38%), Positives = 267/488 (54%), Gaps = 55/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ RK EF ++ ++MYVCGPTVY+F H+GNARP VFD L R Y E Sbjct: 1 MKIYNTMTRKKEEFIPLEEGKVKMYVCGPTVYNFIHLGNARPFTVFDTLRRYFEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY++N TD+DDKII+R+ +E S P + K +++ D L T P+ Sbjct: 60 -VTYIQNFTDVDDKIIKRSHEEGIS-P-----EEVAEKYIKEYFIDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I +I +Q++I G+AYEA +++F T YG S + I+E ++G R+ Sbjct: 113 VTDNIDNIIVFVQDLIDKGYAYEAGGDVLFRTRKFKEYGKLSHQNIEELELGARIDVDDK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS+ YLG DIH GG DL FPH Sbjct: 173 KEDPLDFVLWKAKKEGEPGWQSPWGEGRPGWHIECSVMSNRYLGNTIDIHAGGQDLQFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + A W+HNG++N++G KMSKS GNF T+ ++ G Sbjct: 233 HENEIAQSECRNG-HTFARYWMHNGYINVDGEKMSKSLGNFFTVRDISNKYDLG------ 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLT----EAEILLSKWPQTSTSKGIIDPA 350 ++R +L T YR P++F+ ++RLT AE +L +S D Sbjct: 286 -LVRFFLLATQYRNPVNFSDTVLEQAKAGLERLTNARDNAEFILGNLADSSLRDEEKDMV 344 Query: 351 V---------LSALYNDLNTVSAIQALHKLAR--------ESTKNHDL--LPIFNASAHI 391 + A+ +DLNT AI + +LA+ +S+K L IFN + Sbjct: 345 AGLDKYRERFIEAMDDDLNTADAISVIFELAKFMNTNISDQSSKEFVQLNLDIFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I + ++S +E L+ +R K K F+ AD IR +L + G +ED + Sbjct: 405 LNIANKSVEEDDSLSQKVEDLIAKRAQAKKEKNFALADQIRDELTAMGIAIEDTR----- 459 Query: 452 QRMTRWKQ 459 + +WK+ Sbjct: 460 -QGVKWKR 466 >gi|312126760|ref|YP_003991634.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311776779|gb|ADQ06265.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 465 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 258/470 (54%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGITV------FELAERFIQEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKGIIDPA 350 +RL ML HYR+P++F++ + +AE+ L+ +S + ++ A Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDMLKAA 344 Query: 351 V-------LSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI 394 + + A+ +DLNT A L ++ RE ++ + + L + ILGI Sbjct: 345 IEDLKAKFIDAMEDDLNTAEATGYLFEMVREINTYANSCSKETLTFAKDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I I +LV++R K K F+ AD IR +L+S G+I+ D Sbjct: 405 LEQYSEKEEAIPQEILELVKKRNQARKAKNFAEADRIRDELKSLGYIVLD 454 >gi|325295505|ref|YP_004282019.1| cysteinyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065953|gb|ADY73960.1| cysteinyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 472 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 194/476 (40%), Positives = 265/476 (55%), Gaps = 52/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NTL K EF+ ++ ++MYVCGPTVYD AHIG+AR IVFDV+ R Y G + Sbjct: 2 IRVFNTLTEKKEEFKPLNDKTVKMYVCGPTVYDHAHIGHARSAIVFDVIRRWFEYR-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TD+DDKII+R+++E IP + + K + + +D L PT++P+ Sbjct: 61 -VIYVRNYTDVDDKIIKRSKEE--GIPWYE----VAKKYIESYEEDMKALNIKEPTYKPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I +I+ +I G+AYE+ ++ F YG S+RK +E G R+ Sbjct: 114 VTEHIEEIIEMIKGLIAKGYAYESEGDVYFSVEKFSEYGKLSKRKTEELIAGARIEPGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+S EPGWESPWG GRPGWHIECSAM+ YLG+ DIHGGGLDLIFPH Sbjct: 174 KKNPLDFALWKKSKEGEPGWESPWGIGRPGWHIECSAMAMKYLGRTMDIHGGGLDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+ + KMSKS GNF TI ++L + + + Sbjct: 234 HENEIAQS-EAYTGKSFVRYWLHNGFVMVNKEKMSKSLGNFFTIKDIL-------KEFSS 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+RL +L THYR PIDF+ +RL +AE + SK II+ Sbjct: 286 DVLRLFLLSTHYRSPIDFSFERLKDAERSFGRLLNFIESKEIIEKLPTFEKNSEIFDVEN 345 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNAS 388 SA+ +D NT A+ + +L +E+ D + I + Sbjct: 346 YKLQFESAMDDDFNTARALGVIFELVKEANLIKDKAIKENKISNKEKETILKAIGIVESY 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG ++ K+ I+ L+ R L K K F AD IR L+ G ILED Sbjct: 406 LKLLGFKLEKKKQEGIEDELIKLLIDVRSELRKRKAFDLADKIRDGLKDLGIILED 461 >gi|148358849|ref|YP_001250056.1| cysteinyl-tRNA synthetase [Legionella pneumophila str. Corby] gi|187629845|sp|A5IBG0|SYC_LEGPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148280622|gb|ABQ54710.1| cysteinyl-tRNA synthetase [Legionella pneumophila str. Corby] Length = 456 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 263/474 (55%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLRPGKIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + SI +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASERDVSI------DELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G AY N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGSAYVSENGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L+ Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLKEHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSK--GIIDPAVLS 353 VIR +L +HYR P++++ + L A+ L + PQT+ SK Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEYWQEQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI------EVCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLQARAERNWAKADQIRTDLLSKGIELED------GATGTTWRR 453 >gi|190150242|ref|YP_001968767.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263581|ref|ZP_07545196.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229558612|sp|B3GXR0|SYC_ACTP7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189915373|gb|ACE61625.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871224|gb|EFN02953.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 459 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 184/468 (39%), Positives = 266/468 (56%), Gaps = 42/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+ + + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINSNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NEMCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R L HYR +++++ L A L + + + + ++ A + Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVE-AFKA 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCKEH 400 A+ +D NT A+ L ++ARE K + L A +LG+ E + Sbjct: 345 AMDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAARLKELAGVLGLLYQDPEAFLQG 404 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N +A IE L+++R K ++ AD +R +L++ +LED N Sbjct: 405 DADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN 452 >gi|289579166|ref|YP_003477793.1| cysteinyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] gi|289528879|gb|ADD03231.1| cysteinyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] Length = 466 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 200/491 (40%), Positives = 265/491 (53%), Gaps = 62/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EFQ ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y G K Sbjct: 1 MKLYNTLSRTKEEFQPLNDKVVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKELAEKYIHEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKGYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWGRGRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGRGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQS-EALYGQQFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ-------------TSTSKGII 347 V+RL ML+ HYR PI+F++ + +A E LL+ K I+ Sbjct: 285 EVLRLFMLIAHYRNPINFSLDLMDQANSAYERLLNAVANLKHLFTVCKERELNEEEKRIV 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ + N +L +F + I Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTANINLSGNSSKELVKYILDMFLKLSEI 404 Query: 392 LGI---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 LG+ V + ++ I IEK Q R K K + AD IR +L KG ILED P Sbjct: 405 LGLFYRSVKTDIDDEEILALIEKRQQAR----KEKNWKLADEIRDRLREKGIILED--TP 458 Query: 449 DNGQRMTRWKQ 459 + RWK+ Sbjct: 459 EG----VRWKR 465 >gi|206890680|ref|YP_002249765.1| cysteinyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] gi|226735066|sp|B5YID4|SYC_THEYD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206742618|gb|ACI21675.1| cysteinyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 487 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 205/507 (40%), Positives = 267/507 (52%), Gaps = 73/507 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL K+ EF+ I+ + +Y CG TVYD HIG+AR +VFDV+ + LRY E Sbjct: 1 MRVFNTLTDKLEEFKPINDKKVGIYACGVTVYDLCHIGHARSAVVFDVIVKYLRYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII RA +E S I K T ++ KD RL +P+ Sbjct: 60 -VKFVKNFTDIDDKIINRANKEGVSW------KEIAEKYTGEYYKDMDRLGITRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT HI +MI +IQ +I G+AYE + F P YG S++KIDE G RV Sbjct: 113 ATEHINEMIEIIQTLINKGYAYEIEEGQAKSVYFSVEKFPQYGKLSKKKIDELISGARVE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL Sbjct: 173 VDERKKSPLDFALWKASKPGEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + A WIHNGF+ + KMSKS GN + I +LL+ Sbjct: 233 IFPHHENEIAQSE-AFTGKPFAKYWIHNGFVTINKEKMSKSLGNVLNIRDLLDI------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------------- 340 + A +RL +L +HYR PI+F + + EAE + + T Sbjct: 286 -YDAEALRLFLLSSHYRSPIEFAHEYIKEAEATVDRVYSTIMRIEDFEKIEINDKSSIEF 344 Query: 341 STSKGIID---PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL----- 392 K +++ P A+ +D NT A+ L + +E + D P N L Sbjct: 345 DKVKAMLENLKPEFEKAMDDDFNTAKALGILFEFIKEINRFMDKKPSQNKEIDFLVTAKR 404 Query: 393 GIEVCKEHLN----------------KNISI---AIEKLVQERLILLKMKKFSSADYIRK 433 I+ LN K I+I I +L++ER K K + AD IR+ Sbjct: 405 AIKEIGSVLNLFQRQPVDWYRDLLKVKKIAIKEEEINRLIKERTEARKNKDWKKADSIRE 464 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 QL SKG ILED PD T WK K Sbjct: 465 QLLSKGIILED--KPDR----TIWKVK 485 >gi|190575186|ref|YP_001973031.1| cysteinyl-tRNA synthetase [Stenotrophomonas maltophilia K279a] gi|190013108|emb|CAQ46740.1| putative cysteinyl-tRNA synthetase [Stenotrophomonas maltophilia K279a] Length = 458 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 184/479 (38%), Positives = 262/479 (54%), Gaps = 48/479 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N L R++ F +DP+ +YVCGPTVY++ HIGNAR +VF VL LLR +G Sbjct: 3 LRLHNNLTRQLEPFTPLDPACPTLYVCGPTVYNYVHIGNARGPVVFGVLADLLRRRFG-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y RNITD+DDKI AR++ +PI S IT + + +D L + P +P Sbjct: 61 GLRYARNITDVDDKINTAAREQ--GVPI----STITDRFAAAYREDMAALGVVPPDIEPE 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+PQ+I +I+ +I +GHAY A ++F +S YG SRR +E G RV + Sbjct: 115 VTAHMPQIITMIEQLIANGHAYAAEGHVLFAVASFDGYGKLSRRDPEEMLAGARVDVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FPH Sbjct: 175 KRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA A W+HNG LN G KMSKS GN +++L+ R P Sbjct: 235 HENEIAQSECAHGGRIFARYWLHNGMLNFGGAKMSKSLGNIERVHDLV-------RQHPP 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------TSKGIIDPAVLSALYND 358 +RLA+L HYR+P+D++ + ++ L + T + +I +V + L +D Sbjct: 288 EALRLALLSAHYRQPLDWSDGLIEQSVRTLDRLYGTLRELASIEASAVIPASVEATLDDD 347 Query: 359 LNTVSAIQALH----------------KLARESTKNHDLLPIFNAS-AHILGIEVCKEHL 401 LNT A+ + +L E L + A A G Sbjct: 348 LNTPQALAEVARIAADARRATDPAEQARLKGELLGAGLALGLLQADPAQWFGTAAG---- 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I+ L+ ER K + F+ +D IR QL ++G +LED + RW +K Sbjct: 404 DGGDDARIQGLIDERAAAKKARDFARSDAIRDQLAAEGIVLEDTP------QGVRWSRK 456 >gi|254281834|ref|ZP_04956802.1| cysteinyl-tRNA synthetase [gamma proteobacterium NOR51-B] gi|219678037|gb|EED34386.1| cysteinyl-tRNA synthetase [gamma proteobacterium NOR51-B] Length = 461 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/382 (45%), Positives = 224/382 (58%), Gaps = 24/382 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YNT RK F DP+ + MYVCGPTVY+ AHIGNARP++VFD L R+LR Y Sbjct: 3 ELALYNTFSRKKEIFTPADPNRVTMYVCGPTVYNLAHIGNARPVVVFDTLNRVLRSRY-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITDIDDKIIE AR I +T + T ++ +D L L P +P Sbjct: 61 PNVIYARNITDIDDKIIEAARSAGTDI------KDVTDEFTAKYREDMGNLNTLIPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I M+ L++ ++ HAY A ++F S+ YG S R +D+ G RV Sbjct: 115 HATDNIGPMLDLMERLLAGDHAYVAEGHVLFAVDSMAEYGQLSGRSLDDMLAGARVEVAS 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S+ EPGWESPWGRGRPGWH+ECSAM +LG DIHGGG DLIFP Sbjct: 175 YKRHPGDFVLWKPSSDDEPGWESPWGRGRPGWHLECSAMIKAHLGDTIDIHGGGRDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQSCCA E W+HN +L+++G KMSKS GN T+ ELL+ S+ Sbjct: 235 HHENERAQSCCAYGGE-FVRYWMHNAYLDMDGEKMSKSLGNVRTVRELLQ-------SYR 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------AVLSAL 355 V+R A+L HYR + F+ L A+ L + P AV AL Sbjct: 287 GEVLRFALLSAHYRSELTFSESLLDNAKSALDSFYSALRQVADTAPEAVEASETAVAQAL 346 Query: 356 YNDLNTVSAIQALHKLARESTK 377 +DLNT AI LH +++ K Sbjct: 347 LDDLNTPQAIAELHAVSKRLNK 368 >gi|225181302|ref|ZP_03734747.1| cysteinyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] gi|225168082|gb|EEG76888.1| cysteinyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] Length = 469 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 269/491 (54%), Gaps = 59/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL RK EF ++ + +Y CGPTVYD+ HIGNAR IVFDV+ R LR+ + Sbjct: 3 VRVFNTLTRKKEEFVPVEGKKVGIYACGPTVYDYFHIGNARIFIVFDVIRRYLRWRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I+RA + ++P + + + + +D L P+ Sbjct: 62 -VTFVQNFTDIDDKMIKRANELGITVPE------LAERYIEAYFEDVEALGVEPADEHPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +M+ LIQ + G AYE + ++ F T + NYG S + +DE + G RV Sbjct: 115 ATEHIEEMVELIQKLEAKGMAYEVDGDVYFHTPAFDNYGELSHQPLDELESGARVDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF+LWK+ P EP WESPWG+GRPGWHIECS MSS YLG DIH GG DLIFPH Sbjct: 175 KKHPLDFVLWKKQKPGEPAWESPWGKGRPGWHIECSVMSSKYLGDTLDIHAGGPDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS A + A W+H G+LN+ KMSKS GNF+T+ E+ + Sbjct: 235 HENEKAQSEGATG-QPFAKYWLHAGYLNINQEKMSKSLGNFMTVREIR-------KQIDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWP--QTSTSKGIID 348 ++R ML HYR PI+++ L +A+ LL K P Q ++ Sbjct: 287 QIVRFFMLSAHYRNPINYSPDLLEQAKSGLDRLNNVVYNLRDLLEKLPEGQGDSADATER 346 Query: 349 PAVL--------SALYNDLNTVSAIQALHKLAREST---KNHDL--------LPIFNASA 389 A L A+ +D NT + L +ARE+ KN + L +F Sbjct: 347 LAALEAHRGRFVEAMDDDFNTADGLAVLFDVARETNAYLKNAQVSRQVVEKTLALFEELG 406 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG ++ ++++ + +++++R K K +++AD IR QL++ G +LED P Sbjct: 407 SVLGF--FQKQDDEDLDATVNEMIEKRQAARKEKDWATADAIRDQLQAMGIVLED--TPQ 462 Query: 450 NGQRMTRWKQK 460 RW++K Sbjct: 463 G----IRWRRK 469 >gi|222530216|ref|YP_002574098.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] gi|254765173|sp|B9MMM6|SYC_ANATD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|222457063|gb|ACM61325.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 465 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 257/470 (54%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGITV------FELAERFIQEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKGIIDPA 350 +RL ML HYR+P++F++ + +AE+ L+ +S + + A Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDKLKAA 344 Query: 351 V-------LSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI 394 + + A+ +DLNT A L ++ RE ++ + + L + ILGI Sbjct: 345 IEELKAKFIDAMEDDLNTAEATGYLFEMVREINTYANSCSKETLTFAKDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I I +LV++R K K F+ AD IR +L+S G+I+ D Sbjct: 405 LEQYSAKEEAIPQQILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLD 454 >gi|254671629|emb|CBA09335.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha153] Length = 473 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 191/478 (39%), Positives = 257/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFTPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 345 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E T N L A I+G+ Sbjct: 346 DPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L ++ IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGVASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILED 463 >gi|282857764|ref|ZP_06266973.1| cysteine--tRNA ligase [Pyramidobacter piscolens W5455] gi|282584434|gb|EFB89793.1| cysteine--tRNA ligase [Pyramidobacter piscolens W5455] Length = 474 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 191/493 (38%), Positives = 262/493 (53%), Gaps = 59/493 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN L RK F + + Y CGPTVYD+ HIGNARP IVFDVL R L + E Sbjct: 3 LALYNDLTRKKEPFVPLHEGKVAFYSCGPTVYDYFHIGNARPFIVFDVLRRYLEFRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I RA ++ ++ + K + +D L + PR Sbjct: 62 -VTFVQNFTDIDDKMIARANRDGVTV------QQLAEKTIADYYEDADALGIKRASFYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IP++I +IQ II +GHAY A+ + FD S P YG S + +D+ + G R+ Sbjct: 115 ATEYIPKIIAMIQRIIDNGHAYVADGTVFFDVKSFPAYGKLSHQNLDDLQSGARIEVDDV 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK P EP WESPWG GRPGWHIECSAMS+ LG DIH GG+DL+FPH Sbjct: 175 KRSPLDFVLWKPQKPGEPAWESPWGLGRPGWHIECSAMSTDLLGDTVDIHTGGIDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + W+HN ++ + KMSKS GNF+ T + + +P Sbjct: 235 HENEIAQTEAATG-KPFVKYWLHNEYILINAEKMSKSLGNFL-------TARAARQKFPP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG--------------- 345 IR+ ML HYR PI+FT + L +A E L + W +KG Sbjct: 287 LAIRMFMLGAHYRSPINFTPEGLEQAAAAVERLRNCWSDLQFAKGGRLGETSAAGAALMA 346 Query: 346 ---IIDPAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASAH-------- 390 +A+ +D NT +AI + + E K N L P A+A Sbjct: 347 ALDTFRADFTAAMDDDFNTAAAIGVIFEAVTEVNKYLKGNEKLDPAAVAAAEKFFGDIDS 406 Query: 391 ---ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I+GIE K+ + + + IE L+ ER K + F +D IR +L ++G ILED Sbjct: 407 VMGIIGIEQEKKEESGDEAARIEPLIAERNAARKARDFKRSDAIRDELAAQGIILED--T 464 Query: 448 PDNGQRMTRWKQK 460 P T+WK+K Sbjct: 465 PQG----TKWKKK 473 >gi|118595239|ref|ZP_01552586.1| cysteinyl-tRNA synthetase [Methylophilales bacterium HTCC2181] gi|118441017|gb|EAV47644.1| cysteinyl-tRNA synthetase [Methylophilales bacterium HTCC2181] Length = 456 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 196/477 (41%), Positives = 268/477 (56%), Gaps = 43/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N+L +K F++I P ++MYVCG TVYDF H+G+AR +IVFD++YR + E Sbjct: 2 IKLFNSLSKKKEIFKSIVPGQVKMYVCGMTVYDFCHLGHARVLIVFDLIYRWFKASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA ++ + ++T + + D L ++P +P+ Sbjct: 61 -VTYVRNITDIDDKIITRAAEQGVTY------GVLTKQFIDEMNADAEALGVISPDAEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +IQ +I G+AY +NN++ + S YG S + +++ + G RV Sbjct: 114 ATESIDAMIIMIQGLIEKGYAYVGSNNDVFYAVSKFNGYGKLSGKSLEDLRAGNRVEVDK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKN DF+LWK + P EP W SPWG+GRPGWHIECSAMS+ +LGK FDIHGGG DL FP Sbjct: 174 FKKNSFDFVLWKSAKPGEPCWNSPWGKGRPGWHIECSAMSNKFLGKNFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + AN W+HNGF+ ++ KMSKS GNF TI E+L + Sbjct: 234 HHENEIAQSEAFNGCQ-MANYWLHNGFVKVDNEKMSKSLGNFFTIREIL-------NHYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------PQTSTSKGIIDPAVL 352 ++R +L YR P++++ L +A+ L++ Q K Sbjct: 286 PEIVRFFVLKAQYRSPLNYSDTHLEDAKQGLTRLYLAIRGNDTRIDQEIDWKNNFASQFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTK-NHDL-LPIFNASAHILGI-EVCKE-HLNKNI--- 405 AL +D NT AI L LA E K N D + A+ILGI E+ E L NI Sbjct: 346 DALDDDFNTSEAISILFSLANEVNKSNQDQEKQLLIQLANILGILEMDPELFLRGNIKSS 405 Query: 406 --SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 I I+ L+ +RL K K + AD IR LE +LED N T W++K Sbjct: 406 DNDIDIDLLISDRLSAKKNKDYQKADEIRIFLEGHDILLEDTPNG------TIWRKK 456 >gi|113460388|ref|YP_718450.1| cysteinyl-tRNA synthetase [Haemophilus somnus 129PT] gi|123131947|sp|Q0I1Q1|SYC_HAES1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|112822431|gb|ABI24520.1| cysteinyl-tRNA synthetase [Haemophilus somnus 129PT] Length = 459 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 194/481 (40%), Positives = 267/481 (55%), Gaps = 50/481 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKIFNTLTREKEVFKPISENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII R S+ + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIRR------SLENRETCEQLVDRMVVEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY A+N +++FD S YG SR+ + + + G RV Sbjct: 114 ATHHIAEIIALVEKLIARGHAYVADNGDVMFDVESFKEYGKLSRQDLTQLQAGARVEISE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWNSPWGAGRPGWHIECSAMNCKHLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGNRYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A +R +L HYR ++++ + L A L + + +G AV Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLDLAHGALERL--YTALRGTDKSAVAFGGENFIAQFT 343 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI-----EVCKE 399 A+ +D NT +AI L ++ARE KN D L A ILG+ E + Sbjct: 344 EAMNDDFNTPNAISVLFEMAREINRLKNEDKLLADGLAARLRELAGILGLLEQDPEDFLQ 403 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IA IE L+++R + K ++ AD R +L + G ILED G T W+ Sbjct: 404 AGSDDAEIAKIEALIKQRNDARQAKDWARADAARNELTTMGVILED------GSNGTMWR 457 Query: 459 Q 459 + Sbjct: 458 K 458 >gi|332289654|ref|YP_004420506.1| cysteinyl-tRNA synthetase [Gallibacterium anatis UMN179] gi|330432550|gb|AEC17609.1| cysteinyl-tRNA synthetase [Gallibacterium anatis UMN179] Length = 459 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 188/481 (39%), Positives = 267/481 (55%), Gaps = 50/481 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--YYG 62 +KI+NTL+R+ F I P+ + MYVCG TVYD HIG+ R + FDV+ R LRY Y+ Sbjct: 2 LKIFNTLKREKEIFTPIHPNQVGMYVCGVTVYDLCHIGHGRTFVSFDVIARYLRYLGYH- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 +TYVRNITD+DDKII+RA + H + + + + KD L P + Sbjct: 61 ---LTYVRNITDVDDKIIKRALENHETC------EHLVDRMVAEMYKDFDALNIQRPDFE 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HIP++I L+Q +I +GHAY A N +++FD S P YG SR+ + + + G RV Sbjct: 112 PRATHHIPEIIALVQRLIDNGHAYVAQNGDVMFDVDSFPEYGKLSRQDLSQLQAGARVEI 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+ Sbjct: 172 NDIKKNPMDFVLWKMSKENEPSWQSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLM 231 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L+ Sbjct: 232 FPHHENEIAQSCCA-HGGAYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVLQ-------H 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVL 352 + A +R +L HYR ++++ + L A L + T+ A Sbjct: 284 YDAESVRYFLLTAHYRSQLNYSEENLKLAHSALERLYTALRGTDANATAAGGEQFIEAFK 343 Query: 353 SALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNAS----AHILGI------EVCK 398 +A+ +D NT A+ L +ARE K + F A A +LG+ + Sbjct: 344 AAMDDDFNTPGALSVLFDMARELNKLKAEQNPQTDAFAARLRELAGVLGLLYQDPETFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ + + IE L+ +R K +++AD R +L + G ++ED G T W+ Sbjct: 404 AGMDDDETKIIETLIAQRNQARANKDWATADAARDKLAAMGVVIED------GANGTTWR 457 Query: 459 Q 459 + Sbjct: 458 K 458 >gi|330503048|ref|YP_004379917.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina NK-01] gi|328917334|gb|AEB58165.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina NK-01] Length = 461 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 188/467 (40%), Positives = 263/467 (56%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ ++ +++RMYVCG TVYDF HIG+AR M+ FDV+ R LR + Sbjct: 3 LSIYNTLSKVKEPFKPLEGNSVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRQRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + + + +D RL L P +PR Sbjct: 62 -VTYVRNITDIDDKIIKRANEN------GEPFEALVERMIAAMHEDEARLNVLRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M +IQ +I G AY N ++ + + YG SRRKIDE K+G R+ Sbjct: 115 ATGHIAGMHQMIQTLIDKGFAYAPGNGDVYYRVTKFETYGKLSRRKIDELKIGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG+GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 IKEDPLDFVLWKAAKPGEPSWESPWGKGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KQYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKG-IIDPAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ P+ + + G SA+ Sbjct: 287 PEVVRYLLVSSHYRSPINYSEESLKEAKGALERFYNGLKGLPEAAPAGGEAFVERFGSAM 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH------- 400 +D N+ A L ++ RE + + L A +LG+ + Sbjct: 347 DDDFNSPEACAVLFEMIREVNRLRESDLQAAAGLAAQLKQLASVLGVLQLEPDAFLQAGA 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K + +E L+ RL K ++ +D IR QL + G +LED K Sbjct: 407 AGKVDAAEVEALIAARLQARADKNWAESDRIRDQLTAMGVVLEDGKG 453 >gi|242050146|ref|XP_002462817.1| hypothetical protein SORBIDRAFT_02g032450 [Sorghum bicolor] gi|241926194|gb|EER99338.1| hypothetical protein SORBIDRAFT_02g032450 [Sorghum bicolor] Length = 571 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 193/500 (38%), Positives = 273/500 (54%), Gaps = 74/500 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++ +YNT RK +F+ DP + MYVCG T YD +HIG+AR + FDVLYR LRY Sbjct: 72 RELHLYNTKSRKKEQFRPRDPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYLD 131 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 132 YE--VRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRFSDDFLSDMANLQCLPPSV 183 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI ++I +I+ I+ + AY ++ F + P YG S RK+D+ + G RV Sbjct: 184 EPRVSDHIHEIINMIKQILDNSCAYVVGGDVYFSVENFPEYGELSGRKLDDNRAGERVAV 243 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DLI Sbjct: 244 DERKRNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLI 303 Query: 242 FPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS CC + T N WIHNGF+N+ +KMSKS GNF+TI +++E Sbjct: 304 FPHHENEIAQSRAACC----DSTINYWIHNGFVNVNSQKMSKSLGNFVTIRKVIEM---- 355 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL------------SKWPQTSTSKGI 346 + +R+ +L THYR PI++T+++L A L S Q S + Sbjct: 356 ---YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLRDCEESCQQQGSNTGNS 412 Query: 347 IDPAVL-----------SALYNDLNTVSAIQALHK---------LARESTKNHDLLPIFN 386 + P L +++ +DL+T A+ A+ + R+ K L + Sbjct: 413 LPPNTLNYIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQDKRLEALS 472 Query: 387 A----------------SAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFSS 427 A S++ ++ ++ + SI E ++Q ER K K++ Sbjct: 473 ALDEKIRVVLSVLGLLPSSYHEALQQLRDKALRRASITEELVLQKIEERTAARKAKQYEK 532 Query: 428 ADYIRKQLESKGFILEDYKN 447 +D IRK+L + G L D N Sbjct: 533 SDEIRKELAAVGIALMDGPN 552 >gi|330963331|gb|EGH63591.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 460 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 182/478 (38%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ ++T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDVLTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIEKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ DPA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAADPAGGEAFVERFTAAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRETDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|325578800|ref|ZP_08148847.1| cysteine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159624|gb|EGC71756.1| cysteine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] Length = 482 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 187/483 (38%), Positives = 270/483 (55%), Gaps = 46/483 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +KI+NTL R+ F+ I + MYVCG TVYD HIG+ R + FDV+ R LR Sbjct: 22 KNMLKIFNTLTREKEVFKPIHEGKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLG 81 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + +TYVRNITD+DDKII+RA + + + + Q+ KD L L P Sbjct: 82 YD--LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDF 133 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT+HIP++I +++ +I GHAY ANN +++FD S YG SR+ +D+ + G R+ Sbjct: 134 EPRATHHIPEIIEIVEKLIARGHAYVANNGDVMFDVESFKEYGKLSRQDLDQLQAGARIE 193 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 194 INEIKKNPMDFVLWKMSKENEPSWPSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDL 253 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA + N WIH+G + ++ KMSKS NF TI ++L Sbjct: 254 MFPHHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLSNFFTIRDVL-------N 305 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIID--PAV 351 + A +R +L HYR ++++ + L A+ L + Q++ + G + A Sbjct: 306 HYNAEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVEAF 365 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 A+ +D NT +A+ L ++ARE + K + L A ILG+ + Sbjct: 366 REAMDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLCELAGILGLLQQDPEKFL 425 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + + IE L+++R K +++AD R +L + G +LED G T W Sbjct: 426 QAGSDDDEVAKIEALIKQRNEARAAKDWTAADAARNELTAMGIVLED------GPNGTTW 479 Query: 458 KQK 460 +++ Sbjct: 480 RKQ 482 >gi|261855684|ref|YP_003262967.1| cysteinyl-tRNA synthetase [Halothiobacillus neapolitanus c2] gi|261836153|gb|ACX95920.1| cysteinyl-tRNA synthetase [Halothiobacillus neapolitanus c2] Length = 454 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 184/457 (40%), Positives = 250/457 (54%), Gaps = 35/457 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY++ R EF I P + MYVCG TVYD HIG+AR M+VFD++ R R E V Sbjct: 4 IYDSHARAKREFVPIKPKTVGMYVCGMTVYDRCHIGHARVMVVFDMVVRYFRASGYE--V 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII RA + SI +T + + D L CL PT +PRAT Sbjct: 62 HYVRNITDIDDKIIARAAENKESI------RSLTERYIEAMHDDAAALGCLLPTAEPRAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + M+ +I+++I GHAY A N ++ FD S+ YG S R D+ + G RV K Sbjct: 116 ESVGDMVAMIESLIERGHAYRAANGDVYFDVSTFDRYGELSNRNPDDLRAGARVEIDEAK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +P DF+LWK P +P W++P+G GRPGWHIECSAMS+ LG FDIHGGG DL FPHH Sbjct: 176 TDPLDFVLWKAEKPGDPSWDAPFGPGRPGWHIECSAMSTRALGATFDIHGGGQDLQFPHH 235 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS CA N W+HNGF+ + KMSKS GNF T+ E++ R + Sbjct: 236 ENEIAQSECATG-HHYVNYWMHNGFVRINEEKMSKSLGNFFTVAEVM-------RQYHPE 287 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALYND 358 VIRL +L +HYR P++++ Q L A L++W PQ T + + +D Sbjct: 288 VIRLFVLSSHYRSPLNYSDQNLDAARASLTRWYTAIKDAPQNGTPNPEVMARFRGVMDDD 347 Query: 359 LNTVSAIQALHKLARE--STKNHDLLPIFNASAHILG---------IEVCKEHLNKNISI 407 NT A+ + + E +K+ + A IL + ++ Sbjct: 348 FNTPEALAIVFEQISELNRSKDANCAATIKAIGEILNLGQHDPESFLRWAPSSSDQLSDE 407 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 AIE+ + ER K F+++D IR +L++ G +LED Sbjct: 408 AIEQKIAERASARANKDFAASDRIRDELQAAGIVLED 444 >gi|146295747|ref|YP_001179518.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|187629798|sp|A4XHE2|SYC_CALS8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145409323|gb|ABP66327.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 465 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 185/470 (39%), Positives = 253/470 (53%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGITV------FELAERFIQEYYKDADRLNVRRATKSPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I++ G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEDLMAGARVDPSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWNSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKGIIDPA 350 +RL ML HYR+P++F++ + +AE+ L+ +S + + A Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDKLKAA 344 Query: 351 V-------LSALYNDLNTVSAIQALHKLARE------STKNHDLL---PIFNASAHILGI 394 + + A+ +DLNT A L ++ RE S L I ILGI Sbjct: 345 IEELKAKFIDAMEDDLNTAEATGYLFEMVREINTHANSCSKETLTFAKDILKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I I +LV++R K K F AD IR +L+S G+I+ D Sbjct: 405 LEQYSAKEEAIPQEILELVEKRNQARKAKNFLEADRIRDELKSLGYIVLD 454 >gi|322421697|ref|YP_004200920.1| cysteinyl-tRNA synthetase [Geobacter sp. M18] gi|320128084|gb|ADW15644.1| cysteinyl-tRNA synthetase [Geobacter sp. M18] Length = 480 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 194/500 (38%), Positives = 266/500 (53%), Gaps = 66/500 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL EF I+P + MYVCG TVYD HIG+AR +VFD++YR L+ E Sbjct: 3 LRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRYLQAKGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKII RA ++ +P N+ I+ + ++F D RL PT QP+ Sbjct: 62 -VTYVRNYTDIDDKIINRANRD--GVPYNE----ISERFIKEFDSDMARLMLRIPTFQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P++I L+Q +I G AY++ +++ + Y S+R +++ + G R+ Sbjct: 115 ATEHVPEIIALVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIEVDDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ +LG+ DIHGGG DLIFPH Sbjct: 175 KEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+LE + A Sbjct: 235 HENEIAQSEAASG-KPFVKYWLHNGFVNINAEKMSKSLGNFFTIKEVLE-------RYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSK------ 344 V+R +L HYR PIDF+ Q L EAE+ L + P ++ Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALSGIDERLTAGPDHGATEESAELE 346 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---------FNASAHIL 392 I + A+ +D NT A+ + L R + + P+ A L Sbjct: 347 EKCSAIATRFIEAMDDDFNTAMALGHIFDLVRSINRALPVSPLELLKRVKEEVARIAATL 406 Query: 393 GI---------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 G+ + K+ + I IE L+ ER + K F +D IR L K Sbjct: 407 GVCDSVPAAFLQRMKDRKTSEMEIPVEEIEALIAERAEARRSKNFKRSDEIRDLLLEKDI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +L D P T WK K Sbjct: 467 VLLD--TPQG----TTWKVK 480 >gi|315633667|ref|ZP_07888957.1| cysteine--tRNA ligase [Aggregatibacter segnis ATCC 33393] gi|315477709|gb|EFU68451.1| cysteine--tRNA ligase [Aggregatibacter segnis ATCC 33393] Length = 459 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 269/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVVARYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCEQLVDRMVVEMYKDFDALNILRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIAIVEKLIQRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGNQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A L + + +G AV Sbjct: 286 AESVRYFLLSAHYRSQLNYSEENLNLAHGALERL--YTALRGTDKSAVAFGGENFVDTFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE----STKNHD----LLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE T++ D L A ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMARELNKLKTEDMDKANGLAARLRELAGILGLLQLDPEQFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K + +AD R L G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEGLIKQRNEARAAKDWPAADAARNALTQMGIVLED------GLNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|332968931|gb|EGK07978.1| cysteine--tRNA ligase [Kingella kingae ATCC 23330] Length = 469 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 270/480 (56%), Gaps = 62/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ +F+ +DP N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 2 LQIYNTLTRQKEKFEPLDPKNVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQH--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV----KDTTRLACLAPT 120 +TYVRNITDIDDKII+RA + I + T++F+ +D+ +L L P Sbjct: 60 PLTYVRNITDIDDKIIKRANER----------GITIQELTEEFITAMNEDSDKLGVLRPD 109 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P+AT HIPQMI +I+++I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 110 VEPKATEHIPQMIQMIEDLIANGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERV 169 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++P DF+LWK + P EP W SPWG+GRPGWHIECSAM G+ FDIHGGG D Sbjct: 170 DVDTNKRDPLDFVLWKAAKPEEPHWNSPWGKGRPGWHIECSAMGGELFGQTFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADR-----------IEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 L FPHHENEIAQSC A I+ W+HNGF+ ++ KMSKS GNF TI Sbjct: 230 LQFPHHENEIAQSCGAHNSSCNHNHGDKIIQSHVKYWLHNGFIRVDNEKMSKSLGNFFTI 289 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 ++L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 290 RDVL-------KKYQPEVVRFFILRAHYRSPLNYSDAHLDDAKNSLARLYNTLNN---VA 339 Query: 349 PAV--------------LSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHIL 392 PA +A+ +D T A+ L +LA E+ K++ + A +L Sbjct: 340 PAAFELTENTNEYTRKFFAAMNDDFGTAEAMSVLFELANEANKHNSAEFAGCLKALGGML 399 Query: 393 GI--EVCKEHLNKNIS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G+ E + L S I +L+ +R + K ++ +D IR L + I++D Sbjct: 400 GLLQEEPQAFLQSGASDDGLSADEINELIAQRKTARETKNWAESDRIRDVLAAHKIIVKD 459 >gi|125974555|ref|YP_001038465.1| cysteinyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] gi|256004086|ref|ZP_05429071.1| cysteinyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|281419079|ref|ZP_06250096.1| cysteinyl-tRNA synthetase [Clostridium thermocellum JW20] gi|187629806|sp|A3DH43|SYC_CLOTH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|125714780|gb|ABN53272.1| cysteinyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] gi|255992009|gb|EEU02106.1| cysteinyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|281407228|gb|EFB37489.1| cysteinyl-tRNA synthetase [Clostridium thermocellum JW20] gi|316941673|gb|ADU75707.1| cysteinyl-tRNA synthetase [Clostridium thermocellum DSM 1313] Length = 468 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 178/475 (37%), Positives = 260/475 (54%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF ID ++MY CGPTVY++ HIGNARP I+FD L R L Y Sbjct: 1 MRLYNTLTRKKEEFHPIDEKEVKMYSCGPTVYNYFHIGNARPFIIFDTLRRYLEY--KGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA +E ++ + K ++ D L T PR Sbjct: 59 NVKFVQNFTDIDDKMIKRANEEGITV------KELADKFINEYFVDAKGLGIKEATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I +I+ + G AY + ++ F YG S + +++ ++G R+ Sbjct: 113 ATENIDAIIEMIKKLEEKGFAYNVDGDVYFSARKFTEYGKLSHQSLEDLELGARIDVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP W+SPWG+GRPGWHIECSAM++ YLG+ DIH GG DL+FPH Sbjct: 173 KKDPMDFALWKAQKPGEPAWDSPWGKGRPGWHIECSAMANKYLGETIDIHSGGQDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A W+HNGF+N++G KM+KS GNF T+ ++ +T + Sbjct: 233 HENEIAQSEAANG-KPFARFWLHNGFINVDGEKMAKSKGNFFTVRDIAKT-------FDY 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIID------ 348 VIR ML HYR PI+F+ + L +A+ L + + + ++ I D Sbjct: 285 EVIRFFMLSAHYRSPINFSAELLEQAKNGLERIYNCLDNLEYLKEHAQAEKITDSERELQ 344 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNASA 389 + A+ +D+NT AI A+ + +E N + L + Sbjct: 345 NRLLGIKAKFIEAMDDDINTADAIAAIFDIVKEVNTNINATSNSSKEIIDFSLSLIKELG 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI ++ K + IE+L++ R K K + +AD IR +L+ G ILED Sbjct: 405 GVLGI--AQKSRQKVLDKEIEELIERRQKARKEKDWKTADEIRDKLKEMGIILED 457 >gi|268591223|ref|ZP_06125444.1| cysteine--tRNA ligase [Providencia rettgeri DSM 1131] gi|291313193|gb|EFE53646.1| cysteine--tRNA ligase [Providencia rettgeri DSM 1131] Length = 462 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 189/468 (40%), Positives = 264/468 (56%), Gaps = 45/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LQIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + N+++ +T++ + KD L L P +PR Sbjct: 61 -LNYVRNVTDIDDKIIKRAAEN------NESVEALTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L Q++I GHAY AN +++F+ + PNYG SR+ +++ + G RV Sbjct: 114 ATRHIGEIIELTQSLIERGHAYVAANGDVMFEVKTDPNYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKTLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLEY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDPA--------VLS 353 A +R +L HYR +++T + L +A L + T K + PA + Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARSALERMYTALRGTDKSAV-PAGGDEFKARFIE 344 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGI-----EV---C 397 A+ +D NT A L + RE K+ D+ +A +LG+ EV Sbjct: 345 AMNDDFNTPEAYSVLFDMVREVNRLKSEDMSAANGMAAQLRELASVLGLLEQDPEVFLKG 404 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +A IE L+Q+RL K K ++ AD R +L + G +LED Sbjct: 405 GAQTEDDAEVAKIEALIQQRLDARKNKDWAQADAARDELTAMGIVLED 452 >gi|212723404|ref|NP_001131561.1| hypothetical protein LOC100192902 [Zea mays] gi|194691858|gb|ACF80013.1| unknown [Zea mays] Length = 573 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 205/512 (40%), Positives = 278/512 (54%), Gaps = 82/512 (16%) Query: 3 KKIKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++ +YNT RK +F+ DP + MYVCG T YD +HIG+AR + FDV+YR LRY Sbjct: 74 RELHLYNTKSRKKEQFRPRDPGGEVGMYVCGITPYDDSHIGHARAYVAFDVVYRYLRYLD 133 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRN TDIDDKII RA Q P N ++ + + F+ D L CL P+ Sbjct: 134 YE--VRYVRNFTDIDDKIIARANQLGED-PFN-----LSKRFSDDFLLDMANLQCLPPSV 185 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI ++I +I+ I+ + AY ++ F S P+YG S RK+D+ + G RV Sbjct: 186 EPRVSDHIDEIINMIKQILDNSCAYVVGGDVYFSVDSFPDYGELSGRKLDDNRAGERVSV 245 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DLI Sbjct: 246 DERKRNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLI 305 Query: 242 FPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS CC + T N WIHNGF+N+ +KMSKS GNF+TI +++E Sbjct: 306 FPHHENEIAQSRAACC----DSTINYWIHNGFVNVNSQKMSKSLGNFVTIRKVIEM---- 357 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYND 358 + +R+ +L THYR PI++T+++L L QT I S N Sbjct: 358 ---YHPLALRMFLLGTHYRSPINYTIEQLNVTSDRLYYTYQTLLDCEEICQQQQSNTGNS 414 Query: 359 L--NTVSAIQALHKLARESTKNHDL------------LPIFNASAH-------------- 390 L NT++ IQ LH+ E++ + DL L + N H Sbjct: 415 LPANTLNYIQKLHE-EFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQDKRLESL 473 Query: 391 ------------ILGI------EVCKEHLNKNI---SIAIEKLVQ---ERLILLKMKKFS 426 +LG+ E ++ +K + SI E +VQ ER K K++ Sbjct: 474 SALEEKIRVVLSVLGLLPSSYHEALQQLRDKALRRASITEELVVQKIEERTAARKAKQYE 533 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +D IRK+L + G L D PD T W+ Sbjct: 534 KSDEIRKELAAIGIALMD--GPDG----TTWR 559 >gi|257462531|ref|ZP_05626942.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D12] gi|317060185|ref|ZP_07924670.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D12] gi|313685861|gb|EFS22696.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D12] Length = 473 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 194/496 (39%), Positives = 275/496 (55%), Gaps = 67/496 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + F + MYVCGPTVY++ HIGNARP IVFD + R Y + Sbjct: 2 IKIYNTLSAALDTFVPRKEKEVSMYVCGPTVYNYIHIGNARPAIVFDTVRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ-- 122 V YV+N TD+DDK+I+RA +E + I + + +++D + CL + Sbjct: 61 -VKYVQNFTDVDDKMIKRANEE------GSTVEEIAHRYIEAYLED---MKCLHIKEEGM 110 Query: 123 --PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRV 179 P+AT HI +MI +IQ++I GHAYEAN ++ F S+ YG+ S++KI++ + G R+ Sbjct: 111 LRPKATEHIQEMIDMIQSLIDKGHAYEANGDVYFRVSTYHEEYGALSKQKIEDLQSGARI 170 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS+ Y G FDIHGGG D Sbjct: 171 EVTELKESPLDFALWKASKPGEPHWDSPWGKGRPGWHIECSAMSNKYFGNSFDIHGGGQD 230 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS C+ A W+HNG++N++G KMSKS GNF+ + ++L K F G Sbjct: 231 LIFPHHENEIAQSKCSCG-GSFAKYWMHNGYINIDGVKMSKSLGNFVLLRDIL--KHFSG 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPA---- 350 + VIR ML HYR+P++F+ L +A+I L + + S+ IDP Sbjct: 288 K-----VIRFFMLSAHYRKPMNFSDTELNQAKIALERMENSLIRVHEISEHKIDPQGNSG 342 Query: 351 -------------VLSALYNDLNTVSAIQALHKLARESTK------NHDLLPIFNASA-- 389 + A+ D NT AI L +L RE K N + + +A Sbjct: 343 EELKKVLKDTEEKFIEAMDEDFNTAQAIGVLFELVRELNKTLDSPYNQEGYEVLKKTATY 402 Query: 390 ------HILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +LGI V E +N+++ +E +++ R K + +D IR +L G + Sbjct: 403 LYHILYDVLGIAVEVETKVENLTVDLVEFILELRREARAAKNWELSDRIRDRLAELGIQI 462 Query: 443 EDYKNPDNGQRMTRWK 458 +D G+ T W+ Sbjct: 463 KD------GKDSTTWR 472 >gi|325267558|ref|ZP_08134210.1| cysteine--tRNA ligase [Kingella denitrificans ATCC 33394] gi|324980908|gb|EGC16568.1| cysteine--tRNA ligase [Kingella denitrificans ATCC 33394] Length = 487 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 181/476 (38%), Positives = 265/476 (55%), Gaps = 51/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ EF ++P N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 17 ITLYNTLTRQKEEFVPLNPENVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQH--GY 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I +T++ +D+ L L P +P+ Sbjct: 75 PLTYVRNITDIDDKIIARANEN------GETIGELTARFIAAMNEDSDALGVLRPDIEPK 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI QMI +I++++ +G AY A N ++ + YG S + +D+ + G RV Sbjct: 129 ATEHIGQMIAMIEDLVANGKAYPAPNGDVYYAVREFAEYGQLSGKSLDDLRAGERVDVDA 188 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP WESPWG GRPGWHIECSAM G+ FDIHGGG DL FP Sbjct: 189 NKRDPLDFVLWKAAKPGEPSWESPWGNGRPGWHIECSAMGGELFGQTFDIHGGGADLQFP 248 Query: 244 HHENEIAQSCCA--------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 HHENEIAQSC A RI W+HNGF+ ++ KMSKS GNF TI Sbjct: 249 HHENEIAQSCGAHGGLCGHDAPHAAGKRINSHVKYWLHNGFIRVDNEKMSKSLGNFFTIR 308 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP 349 ++L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 309 DVL-------KKYAPEVVRFFILRAHYRSPLNYSDAHLDDAKNSLARLYNTLGNVQAAEF 361 Query: 350 AV-----------LSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILG-IE 395 AV +A+ +D NT A+ L +LA E+ K + +L A LG ++ Sbjct: 362 AVREDANDYTRRFFAAMDDDFNTAEAMSVLFELANEANKTGSAELAGCLKALGGTLGLLQ 421 Query: 396 VCKEHLNKN-------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +H ++ + IE L+ +R + K ++ +D IR L +L+D Sbjct: 422 DDPQHFLQSGGEEGGLSADEIEALITQRKTARETKNWAESDRIRDLLAEHKILLKD 477 >gi|298486254|ref|ZP_07004317.1| Cysteinyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159261|gb|EFI00319.1| Cysteinyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 460 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 182/478 (38%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVARWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|257483826|ref|ZP_05637867.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625911|ref|ZP_06458865.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651301|ref|ZP_06482644.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868387|gb|EGH03096.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890007|gb|EGH22668.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020] gi|330985629|gb|EGH83732.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 460 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 182/478 (38%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|146307594|ref|YP_001188059.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina ymp] gi|187629851|sp|A4XVG1|SYC_PSEMY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145575795|gb|ABP85327.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina ymp] Length = 461 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 263/467 (56%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + FQ + + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR + Sbjct: 3 LSIYNTLTKTKDVFQPLVGNQVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRQRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + + + +D RL+ L P +PR Sbjct: 62 -VTYVRNITDIDDKIIKRANEN------GEPFEALVERMIAAMHEDEARLSVLRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M +IQ +I G+AY N ++ + + YG SRRKIDE K+G R+ Sbjct: 115 ATGHIAGMHQMIQTLIDKGYAYAPGNGDVYYRVTRFETYGKLSRRKIDELKIGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 IKEDPLDFVLWKGAKPGEPSWDSPWGKGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KQYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR PI+++ + L EA+ L ++ P+ + + G A+ Sbjct: 287 PEVVRYLLVSSHYRSPINYSEESLKEAKGALERFYNGLKGLPEAAPAGGEAYVERFGVAM 346 Query: 356 YNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGIEVCKEH------- 400 +D N+ A L ++ RE + D+ + A +LG+ + Sbjct: 347 DDDFNSPEACAVLFEMIREVNRLRESDVQAAAGLAAQLKQLASVLGVLQLEPEAFLQAGA 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K + +E L+ RL K ++ +D IR QL + G +LED K Sbjct: 407 AGKVDAAEVEALIAARLQARADKNWAESDRIRDQLTAMGVVLEDGKG 453 >gi|261393406|emb|CAX51042.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase; CysRS) [Neisseria meningitidis 8013] Length = 473 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 191/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 345 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E T N L A I+G+ Sbjct: 346 DPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILED 463 >gi|88811742|ref|ZP_01126996.1| cysteinyl-tRNA synthetase [Nitrococcus mobilis Nb-231] gi|88791133|gb|EAR22246.1| cysteinyl-tRNA synthetase [Nitrococcus mobilis Nb-231] Length = 469 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 184/474 (38%), Positives = 260/474 (54%), Gaps = 53/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L + F+ I+P +RMYVCG TVYD+ H+G+AR M+VFD + R LR Sbjct: 2 LYIYNSLTNRKEPFRPIEPGRVRMYVCGMTVYDYCHLGHARAMVVFDTVVRYLRS--AGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII RA + + + ++++T + DT L CL P +PR Sbjct: 60 RVDYVRNITDVDDKIIRRAAE------LGEPVNVLTERFIAAMHADTAALGCLLPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE--IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 AT ++ ++ LIQ ++ G+AY+A +E I + YG S +++ + G RV Sbjct: 114 ATAYMDAIVALIQRLLDRGYAYQAVDEGSIYYAVERFEGYGRLSGERLEALRAGARVEPG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ ADF+LWK + P EP W +PWG GRPGWHIECSAM+ LG+ FDIHGGGLDL F Sbjct: 174 AGKRDAADFVLWKAAKPGEPSWPAPWGEGRPGWHIECSAMAGACLGQHFDIHGGGLDLKF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + N W+HNG + + KMSKS GNF T+ E+L+ + Sbjct: 234 PHHENEIAQSEAA-WGGRYVNFWMHNGHIRINDEKMSKSLGNFFTVREVLQVYR------ 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIIDP---AVL 352 A IR +L +HYR P++++ L + L + P T S + P A Sbjct: 287 -AEEIRYFLLSSHYRSPLNYSTSDLDNSRAALERLYLALRDLPFTEASPALAAPYREAFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG------------IEVCKEH 400 A+ +D NT A+ L LARE + D F + A L +V E Sbjct: 346 QAMDDDFNTPLALAVLFDLAREINRRRDR---FESQAAALAATLRELGGLLGLAQVAPEV 402 Query: 401 LNKN-------ISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K + IA +E L+ ER + K + F++AD IR +L+++G LED Sbjct: 403 FLKGGAGSSVAVGIASERVEALLAERALARKNRDFATADRIRDELQAQGIALED 456 >gi|291522471|emb|CBK80764.1| cysteinyl-tRNA synthetase [Coprococcus catus GD/7] Length = 466 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 191/478 (39%), Positives = 266/478 (55%), Gaps = 56/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ++ +RMYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLTRRKDEFVPLEEGKVRMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S+I+ + ++ KD + TH P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVDA------SVISERFIKEAQKDMADMNVKEATHHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ ++ GHAY + + F T S +YG S++ ID+ + G R V Sbjct: 113 ATEEIDGMIDMIQTLVNKGHAYAVDGTVYFKTRSFKDYGKLSKKNIDDLEAGHREIKVNG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPWG GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EEGKEDPLDFVLWKPKKEGEPSWPSPWGDGRPGWHIECSVMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS C D+ + A+ W+HNGFLN+ KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEACNDK--EFAHYWMHNGFLNINNVKMSKSLGNFFTVREIAE------- 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAE------IL--------LSKWPQTSTSK-- 344 + V+R ML HYR P++F+ + L EA IL L+ T T++ Sbjct: 284 KYDLQVLRFFMLSAHYRSPLNFSAE-LMEASRNGLERILTAIDRLRTLNLQGDTCTAEEN 342 Query: 345 ---GIIDPAVL---SALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNAS 388 + D V +A+ +D NT AI A+ ++ + + + +L Sbjct: 343 EQMKVFDALVAKYEAAMEDDFNTADAISAIFEMVKAANIHVTETSTAAFRDQILSEIVRL 402 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI+ K+ + + I+ L+ ER K K F+ AD IR +L +KG IL+D + Sbjct: 403 CDVLGIKTEKKE--ELLDDEIQALIDERQAARKAKNFARADEIRDELLAKGIILKDTR 458 >gi|325205030|gb|ADZ00484.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M01-240355] Length = 473 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 190/481 (39%), Positives = 258/481 (53%), Gaps = 64/481 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHNHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDLEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 D + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 346 EFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 395 -----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + L+ IE L+ R K ++ +D IR L ILE Sbjct: 406 LQRDPTAFLQGSAASDGLSNE---EIEDLIARRKQARADKNWAESDRIRDLLNEHKIILE 462 Query: 444 D 444 D Sbjct: 463 D 463 >gi|332526279|ref|ZP_08402408.1| cysteinyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2] gi|332110113|gb|EGJ10741.1| cysteinyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2] Length = 457 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 186/461 (40%), Positives = 260/461 (56%), Gaps = 37/461 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL R++ F ++P +RMYVCG TVYD H+G+AR + FDV+YR L+ E Sbjct: 3 LRLHNTLTRRLETFVPLEPGRVRMYVCGITVYDLCHMGHARMNLAFDVVYRWLKASGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + I +T + +D L PTH+PR Sbjct: 62 -VTYVRNITDIDDKIIRRALER------GVGIRALTDEMVAAMHRDFAALGLEPPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +PQM+ +I + +G AY A + ++ F P YG S + +DE + G RV Sbjct: 115 ATEFVPQMLDIIGRLERNGLAYRAEDGDVNFAVRRFPGYGKLSGKSLDELRAGERVAVAG 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W+SP+G GRPGWHIECSAMS LG+ FD+HGGG+DL Sbjct: 175 GKEDPLDFVLWKSAKPEEPAEAKWDSPFGAGRPGWHIECSAMSCALLGERFDLHGGGMDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGFLN++ KMSKS GNF TI ++L KKF G Sbjct: 235 QFPHHENEIAQSEGA-FGHPFVNYWLHNGFLNVDNEKMSKSLGNFFTIADVL--KKFDGE 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------DP---A 350 + +R ML THYR P +F L EA L + + DP A Sbjct: 292 T-----VRFFMLRTHYRSPFNFADSLLDEARAALRRLYTALDGADAVACEVDWSDPRAAA 346 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--EVCKEHLNKNIS 406 +A+ +D NT A+ L +LA E ++ D + + + +LGI + + L Sbjct: 347 FKAAMDDDFNTPGALAVLFELANEFNRSRDAAMARLLVSLGAVLGILQQAPRAFLQAGTG 406 Query: 407 I---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I + ++ R + ++F+ AD IR +L ++G L+D Sbjct: 407 VDDAEIARQIEARATAKRERRFADADRIRAELAAQGVELKD 447 >gi|317491067|ref|ZP_07949503.1| cysteinyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920614|gb|EFV41937.1| cysteinyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 461 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 191/483 (39%), Positives = 269/483 (55%), Gaps = 50/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Y Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYNL 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K YVRN+TD+DDKII+RA + + +T + + KD L P +P Sbjct: 62 K---YVRNVTDVDDKIIKRALEN------GETCDQLTERMLAEMHKDFDSLNIARPDLEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT+HIP++I +++ +I GHAY A+N +++F + P+YG SR+ +++ + G RV Sbjct: 113 RATHHIPEIIEIVEQLITRGHAYVASNGDVMFAVDTDPDYGLLSRQDLEQLQAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+F Sbjct: 173 DVKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++LE + Sbjct: 233 PHHENEIAQSSCA-HDGPYVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLE-------HY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKG-IIDPAVLS 353 A +R ++ HYR ++++ + L +A L + PQ + G + + Sbjct: 285 DAETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTEPQAEPAGGDVFEARFRE 344 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHD------LLPIFNASAHILGI-----EVCKE- 399 A+ +D NT A AL LARE K+ D L A ILG+ EV + Sbjct: 345 AMDDDFNTPEAYSALFDLAREVNRLKSEDMAQANALAAELRKLAKILGLLEQDPEVFLQG 404 Query: 400 --HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + IE L+++R K ++ AD R QL + G +LED G + T W Sbjct: 405 GAQADDSEVAQIEALIKQRNDARAAKDWAMADSARDQLNALGIVLED------GPQGTTW 458 Query: 458 KQK 460 ++K Sbjct: 459 RRK 461 >gi|329769070|ref|ZP_08260492.1| cysteinyl-tRNA synthetase [Gemella sanguinis M325] gi|328839561|gb|EGF89137.1| cysteinyl-tRNA synthetase [Gemella sanguinis M325] Length = 465 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 184/488 (37%), Positives = 278/488 (56%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + ++MYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVKMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E S + +T+K + F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEEGIST------TELTNKYIEAFFKDYDALGCARATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I +++ G AYE+N ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIIDFIADLVKEGFAYESNGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W+SP+G GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWDSPFGEGRPGWHIECSVMAKETLGETIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHA-PFSNYWMHNAFINIDNVKMSKSLGNFRLVKDII-------AEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRL----TEAEILLSKWP------QTSTSKGIIDPAVLSA 354 V+RL ML HYR PI++T++ + T E L + + T++ ++D V++A Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELATTNYEKLKTAYQNLQFRLNNETTEEVLDKEVVNA 345 Query: 355 -----------LYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHIL 392 + +D NT +A+ + ++L R + T N + L + NA+ + IL Sbjct: 346 VTQELEKFEEYMQDDFNTANALSSWYELVRISNSYTSKETVNKETLELLNAAFETYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V ++ NK IE L+ ER K + F+ AD IR L+ +G +LED K Sbjct: 406 GINVKED--NKLDDSYIENLIAEREQARKDRNFALADKIRDDLKEQGIVLEDTK------ 457 Query: 453 RMTRWKQK 460 + RWK++ Sbjct: 458 QGVRWKKQ 465 >gi|296134921|ref|YP_003642163.1| cysteinyl-tRNA synthetase [Thiomonas intermedia K12] gi|295795043|gb|ADG29833.1| cysteinyl-tRNA synthetase [Thiomonas intermedia K12] Length = 460 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 191/463 (41%), Positives = 266/463 (57%), Gaps = 40/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R F I+P ++RMYVCG TVYD+ HIG+AR M+VFD+L R L+ G + Sbjct: 4 LHLHNTLTRGKDRFVPIEPGHVRMYVCGMTVYDYCHIGHARVMVVFDLLQRWLKAQ-GLR 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ + I +T + +D L PTH+PR Sbjct: 63 -VTYVRNITDIDDKIIRRAQEN------GETIRALTDRFIAAMHEDADALGVERPTHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ LI + G AY ++ ++ F + P YG S + +DE + G RV Sbjct: 116 ATDYVPQMLDLIGKLKTRGLAYRDSAGDVNFHVRAFPGYGKLSGKSLDELRAGERVEVDT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W S G GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKAAKPAEPEEVKWPSDDGPGRPGWHIECSAMSCALLGETFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN+W+HNGF+ ++G KMSKS GNF TI ++L+ Sbjct: 236 QFPHHENEIAQSEGASG-KPMANVWLHNGFVRVDGEKMSKSLGNFFTIRDILQHVD---- 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 A +RL ++ HYR P++++ + L +A L++ T+ PA L Sbjct: 291 ---AETVRLFIVRAHYRSPLNYSDEHLQDAHAALTRL-YTALDPFADLPARLDWSHPRAQ 346 Query: 353 ---SALYNDLNTVSAIQALHKLARESTKNHD----LLPIFNASAHILGIEVCKEHLNKNI 405 +A+ +DLNT A+ L +LA E K D L L + +E L Sbjct: 347 AFAAAMNDDLNTPEAMAVLFELATEVNKTGDADLAALLKGLGGVLGLLQQNPREFLQSKA 406 Query: 406 SIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +E+LVQER+ + + F+ AD IR +L +KG +LED Sbjct: 407 AAVDAAWVEQLVQERIAAKQARNFAEADRIRAELSAKGIVLED 449 >gi|251793189|ref|YP_003007917.1| cysteinyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] gi|247534584|gb|ACS97830.1| cysteinyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 187/481 (38%), Positives = 269/481 (55%), Gaps = 48/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVVEMYKDFDALNILRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++ +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEITAIVEKLIQRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGNQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTS------KGIIDPAVLS 353 A +R +L HYR ++++ + L A E L + T S + +D A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLNLAHGALERLYTALRGTDKSAVAFGGENFVD-AFRE 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT +A+ L ++ARE K + L A ILG+ + + Sbjct: 345 AMDDDFNTPNALSVLFEIARELNKLKTQDMAKANGLAARLRELAAILGLLQLDPEQFLQA 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +++ IE L+++R K + +AD R L G +LED G T W++ Sbjct: 405 SSDEDEVAKIEALIKQRNEARVAKDWPAADAARNALTQMGIVLED------GPNGTTWRK 458 Query: 460 K 460 + Sbjct: 459 Q 459 >gi|229846997|ref|ZP_04467103.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 7P49H1] gi|229810081|gb|EEP45801.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 7P49H1] Length = 459 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 268/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVVFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKAEDVEKANGLAARLRELGAILGLLQQEPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSNDDEVAKIEALIKQRNEARAAKDWATADAARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|304388715|ref|ZP_07370773.1| cysteine--tRNA ligase [Neisseria meningitidis ATCC 13091] gi|304337279|gb|EFM03455.1| cysteine--tRNA ligase [Neisseria meningitidis ATCC 13091] Length = 699 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 285 YLLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 398 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 459 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 571 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 572 DPMPSEADDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILED 689 >gi|42569504|ref|NP_565717.2| SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding [Arabidopsis thaliana] gi|330253408|gb|AEC08502.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] Length = 563 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 191/496 (38%), Positives = 270/496 (54%), Gaps = 72/496 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K++ ++NT+ RK F+ + MYVCG T YD +HIG+AR + FDVL R L++ Sbjct: 63 KELWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGY 122 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V+YVRN TD+DDKII RA++ D IS+ + + ++F +D +L CL P+ Q Sbjct: 123 E--VSYVRNFTDVDDKIIARAKELE-----EDPISL-SRRFCEEFNRDMEQLQCLDPSVQ 174 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++HIPQ+I LI+ I+ +G+AY+ + +I F P YG S RK+++ + G RV Sbjct: 175 PRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVD 234 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+PADF LWK + EP WESPWGRGRPGWHIECSAMS+ YLG FDIHGGG+DL+F Sbjct: 235 TRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVF 294 Query: 243 PHHENEIAQSCCADRIEKTANI--WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQSC A ++NI WIHNGF+ ++ KMSKS GNF TI ++++ Sbjct: 295 PHHENEIAQSCAAC---DSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL------ 345 Query: 301 SWPAPVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKWPQT------ 340 + +RL ++ THYR PI+++ Q L + E L + T Sbjct: 346 -YHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENGSV 404 Query: 341 -----------------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 S S ++ P L+A+ L T++ + K +++ + L Sbjct: 405 PSDTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIHTRKGKKQARREESLKA 464 Query: 384 IFNASAHILGI------------EVCKEHLNKNISIAIEKL---VQERLILLKMKKFSSA 428 + +L I E KE K + E + VQER K K++ + Sbjct: 465 LETTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQRVQERTDARKNKEYERS 524 Query: 429 DYIRKQLESKGFILED 444 D IRK L G L D Sbjct: 525 DAIRKDLAKVGIALMD 540 >gi|16272052|ref|NP_438251.1| cysteinyl-tRNA synthetase [Haemophilus influenzae Rd KW20] gi|260580618|ref|ZP_05848445.1| cysteinyl-tRNA synthetase [Haemophilus influenzae RdAW] gi|1174501|sp|P43816|SYC_HAEIN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1573026|gb|AAC21753.1| cysteinyl-tRNA synthetase (cysS) [Haemophilus influenzae Rd KW20] gi|260092680|gb|EEW76616.1| cysteinyl-tRNA synthetase [Haemophilus influenzae RdAW] Length = 459 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 267/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEYFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVAFGGENFVATFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQEPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K +S+AD R +L + G +LED G T W+ Sbjct: 404 AGSNDDEVAKIEALIKQRNEARTAKDWSAADSARNELTAMGIVLED------GPNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|118602151|ref|YP_903366.1| cysteinyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567090|gb|ABL01895.1| cysteinyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 462 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/484 (39%), Positives = 277/484 (57%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ F+ I+ + +YVCG TVYD+ H+G+AR +++FDV+ R LR Y+ Sbjct: 2 LKIYNTLSKQKEVFRPINADKVGIYVCGMTVYDYCHMGHARILVIFDVIIRHLRRYFPN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA I + I +T++ +D L L P +PR Sbjct: 61 -VEYVRNITDIDDKIIKRA------IENKEDIYALTNRFIDAMHEDERALGVLPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN + Q+ Y+I+++I G AY+A+N ++ + NYG SR+ ID+ + G R+ + Sbjct: 114 ATNAMKQIFYMIKSLIEKGFAYQAHNGDVYYSVRHFKNYGKLSRKNIDKLEAGARIEIES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAMS+H+LG FDIHGGG+DL FP Sbjct: 174 AKKNPLDFVLWKMSKPNEPSWDSPWGQGRPGWHIECSAMSTHHLGNHFDIHGGGMDLSFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H GF+N++ KMSKS NF TI +LE S+ Sbjct: 234 HHENEIAQSEGANNC-TFVNTWMHIGFVNIDDEKMSKSLNNFFTIRSILE-------SYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVL------- 352 +R ++ +HYR P++F+ L +A+ LS+ +TS + + + Sbjct: 286 CETLRYFIMSSHYRSPLNFSDDNLNKAKSSLSRLYTAIRGLNTSSTVTEKVPMYFDYSVR 345 Query: 353 --SALYNDLNTVSAIQALHKLAR----ESTKNHD-------LLPIFNASAHILGIEVCKE 399 AL ND NT A+ L +LA+ + K+ D LL IL ++ K Sbjct: 346 FNEALDNDFNTPIALSILFELAKTVNLQRKKDVDQANALAQLLKKLGDYIGILQMDADK- 404 Query: 400 HLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L + IS++ ++ + R K F+ +D IR +L G +LED N T Sbjct: 405 FLKQGISLSNSEVDVKITSRNEARADKNFALSDQIRDKLAELGIVLEDNAND------TT 458 Query: 457 WKQK 460 W++K Sbjct: 459 WRRK 462 >gi|116749069|ref|YP_845756.1| cysteinyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] gi|171460796|sp|A0LIR9|SYC_SYNFM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116698133|gb|ABK17321.1| cysteinyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] Length = 493 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 196/514 (38%), Positives = 264/514 (51%), Gaps = 85/514 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL + EF ++P ++ YVCG TVYD +HIG+AR IVFDV+YR LR+ E Sbjct: 3 LHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAIS---IITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKII RA NDA + I + F +D L L P Sbjct: 62 -VTYVRNFTDVDDKIIRRA---------NDAGTDCRSIAQRYIAAFYEDMDALGVLRPDL 111 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +P AT ++P MI +I+ ++ G AY+A ++ F+ P YG S R+I++ G RV Sbjct: 112 EPLATENVPGMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEV 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM S +LGK FDIHGGG DLI Sbjct: 172 DARKRNPLDFVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLI 231 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + W+HNGF+N+ KMSKS GNF+TI ++L+ Sbjct: 232 FPHHENEIAQSEAAFGM-PFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVLQKVH----- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------ 337 +R +L HYR P+DF+ + + EAE L + Sbjct: 286 --PETVRFFVLSKHYRSPVDFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKAL 343 Query: 338 ----PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL--PIFNASAHI 391 P+ + A A+ ND NT A+ L L R + D A Sbjct: 344 RGQDPELFDQIAALSGAFREAMDNDFNTAQALGNLFSLQRHLQRFLDKFGRKQLKGPASA 403 Query: 392 L---GIEVCKEHL----------------NKNISIAIEKLVQ---ERLILLKM-----KK 424 L G + ++H +++ I L + ER I L+ K Sbjct: 404 LARAGADAIRDHALVLGLLTREPEAFQAEQRSLKIKSTGLTEAEVERCIELRRQARQDKN 463 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 F+ AD +R+++E KG LED +P TRW+ Sbjct: 464 FAEADRLREEIEKKGIQLED--SPAG----TRWR 491 >gi|254671915|emb|CBA04234.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha275] gi|325131324|gb|EGC54035.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M6190] gi|325133259|gb|EGC55925.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M13399] gi|325137353|gb|EGC59941.1| cysteinyl-tRNA synthetase [Neisseria meningitidis ES14902] gi|325141357|gb|EGC63840.1| cysteinyl-tRNA synthetase [Neisseria meningitidis 961-5945] gi|325199172|gb|ADY94628.1| cysteinyl-tRNA synthetase [Neisseria meningitidis G2136] Length = 473 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 345 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 346 DPMPSEADDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILED 463 >gi|58697305|ref|ZP_00372667.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila simulans] gi|58536329|gb|EAL59815.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila simulans] Length = 415 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 185/429 (43%), Positives = 256/429 (59%), Gaps = 36/429 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVYD AHIGNAR ++V+DVL++LL++ YG+ VTYVRNITDIDDKII A ++ Sbjct: 1 MYVCGPTVYDTAHIGNARSVVVYDVLFQLLKFCYGK--VTYVRNITDIDDKIINAASEK- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 N I IT+ + F D + C PT++P+AT ++ +I LI++++ GHAYE Sbjct: 58 -----NSNIESITTYYIKAFHDDMESINCKKPTYEPKATENVDYIIKLIEHLLQSGHAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPME----PG 203 ++ + F+ S YG+ S +K DE G+RV +KK+P DF+LWK + ++ Sbjct: 113 SDKHVYFNIESYHEYGALSGKKTDELVPGSRVEVNENKKHPGDFVLWKPANDIDYKLSSY 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL FPHHENEIAQS A A Sbjct: 173 WNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQSKSAFAGSMFAK 232 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNGFL + KMSKS N + + +LL++ G VIR A+L THYR+P+D+T Sbjct: 233 YWMHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG------EVIRYALLKTHYRKPLDWT 286 Query: 324 VQRLTEAEILLSKWPQTS---------TSKGIIDPAVLSALYNDLNTVSAIQALHKLARE 374 +++A+ L+K+ + S S I + AL NDLN A+ LH++A + Sbjct: 287 ENVISDAQETLNKFYRLSRGLDTINIDESNAEISKDFIDALKNDLNIPEALAILHEMAAK 346 Query: 375 STKNHD------LLPIFNASAHILGI--EVCKEHLNKNIS-IAIEKLVQERLILLKMKKF 425 K + L F SA +G+ +E +S IE+L+ R + K + Sbjct: 347 INKMSNESEKLKLTESFVKSARFIGLLESSYQEWFTAGVSHQEIERLIDLRRAAKQNKDY 406 Query: 426 SSADYIRKQ 434 ++AD IR Q Sbjct: 407 NTADKIRDQ 415 >gi|284006809|emb|CBA72076.1| cysteinyl-tRNA synthetase [Arsenophonus nasoniae] Length = 504 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 187/468 (39%), Positives = 262/468 (55%), Gaps = 44/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 43 LKIYNTLSRQKEEFRPITPGKIGMYVCGVTIYDLCHIGHGRTFVAFDVISRYLRYLGYD- 101 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + N+ +TS+ + KD L L P +P Sbjct: 102 -LTYVRNITDVDDKIIKRAAEN------NETCDALTSRMLIEMYKDFDALNILRPDFEPN 154 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + ++ GHAY A+N +++F +S P+YG SR+ +++ + G RV Sbjct: 155 ATHHIKEIIALTERLLKRGHAYIADNGDVMFAINSDPDYGLLSRQDLEQLQAGARVEVAD 214 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 215 VKRNPLDFVLWKMSKPNEPSWSSPWGDGRPGWHIECSAMNGKQLGEHFDIHGGGADLMFP 274 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA+ N W+H G + ++ KMSKS NF TI ++L + Sbjct: 275 HHENEIAQSTCAND-GPYVNYWMHTGMVMVDREKMSKSLNNFFTIRDVLA-------HYD 326 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLS 353 A +R +L HYR +++T + L +A L + S I ++ Sbjct: 327 AETVRYFLLSGHYRSQLNYTEENLKQARTSLERLYTALRDTDANHVKSADNEIFKQRFMA 386 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI--EVCKEHLNK 403 A+ +D NT A L LARE + ++L A+ILG+ + ++ L Sbjct: 387 AMNDDFNTPEAYSVLFDLAREINRLKVDDMAMANELAVQLRQLANILGLLTQNPEQFLQS 446 Query: 404 NISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ IE L+++R K K ++ AD R +L G ILED Sbjct: 447 RAQVSHSAEIEKIEALIKQRNDARKNKFWAQADSARDELTRMGIILED 494 >gi|289523037|ref|ZP_06439891.1| cysteine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503580|gb|EFD24744.1| cysteine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 475 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/495 (38%), Positives = 259/495 (52%), Gaps = 67/495 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN L R+ EF + P I YVCGPTVYD+ HIGNARP +VFD L R + Y E V Sbjct: 5 LYNDLTRRKEEFAPVSPGRIGFYVCGPTVYDYIHIGNARPFVVFDALRRYMEYKGFE--V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK----DTTRLACLAPTHQ 122 YV+N TDIDDK+I +A Q + I + +QF++ D L T Sbjct: 63 IYVQNFTDIDDKMINKANQ----------LGITVKELAEQFIEAYFEDIIPLGVRQATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +I LI II +GHAY + + FD S PNYG S + ++E + G R+ Sbjct: 113 PKATEHIDDIIRLISRIIENGHAYIIDGNVYFDVKSYPNYGKLSGQSLEELQAGARIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK EP W+SPWG GRPGWHIECSAM+ YLG DIHGGG DLIF Sbjct: 173 ERKRHPLDFVLWKAKKEGEPWWDSPWGHGRPGWHIECSAMAMKYLGDTIDIHGGGSDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ A ++ WIHNG+L + KMSKS GN + + E+ +++ Sbjct: 233 PHHENEIAQAEAATG-KQFVRFWIHNGYLLINKEKMSKSLGNILNVREIR-------KNF 284 Query: 303 PAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAV- 351 +RL +L HYR P+DF ++QRL L + + S K D + Sbjct: 285 QPLAVRLFILAAHYRSPLDFSDDSLIQATKSLQRLRNCYSDLLFYMERSQEKNTPDTWLE 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLAREST---------------KNHDLLPIFN 386 +AL +D NT A+ A+ ++ R+ K+ D Sbjct: 345 DVVNNGYKRFCNALDDDFNTAGALGAVFEVVRDLNNYLKENETLDKQALIKSKDFFETVE 404 Query: 387 ASAHILGIEVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 ++GI E +S + IE L++ER K + F+ AD IR +L SKG ILED Sbjct: 405 NILGVIGINTIGEEFAGTLSSSEIEGLIKEREAARKKRDFARADAIRNELASKGIILED- 463 Query: 446 KNPDNGQRMTRWKQK 460 P TRWK+K Sbjct: 464 -TPLG----TRWKKK 473 >gi|121635739|ref|YP_975984.1| cysteinyl-tRNA synthetase [Neisseria meningitidis FAM18] gi|120867445|emb|CAM11217.1| cysteinyl-tRNA synthetase [Neisseria meningitidis FAM18] Length = 699 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 398 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 459 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 571 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 572 DPMPSEADDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILED 689 >gi|260891413|ref|ZP_05902676.1| cysteine--tRNA ligase [Leptotrichia hofstadii F0254] gi|260858796|gb|EEX73296.1| cysteine--tRNA ligase [Leptotrichia hofstadii F0254] Length = 355 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 156/330 (47%), Positives = 219/330 (66%), Gaps = 16/330 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ KI EF+ I+ + ++MYVCGPTVY++ H+GNARP++VFD L R + G K Sbjct: 1 MKLYNTMTNKIEEFKTIEENKVKMYVCGPTVYNYIHLGNARPIVVFDTLARYFEHK-GMK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII ++ +E S S ++ K + F +D ++L L +P+ Sbjct: 60 -VEFVQNFTDVDDKIINKSMEEGTSA------SEVSEKYIKYFFEDISKLNILESVKRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +IQ +I +G AYE + ++ F+ +YG S +KI+E ++G R+ Sbjct: 113 VTENMAEIIEIIQKLIDNGFAYEKDGDVYFEVKKYKDYGKLSNQKIEELELGARIDVSEI 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+ EP WESPWG+GRPGWHIECSAM+ YLG FDIHGGG DL+FPH Sbjct: 173 KKNPVDFALWKKKKDGEPFWESPWGQGRPGWHIECSAMAKKYLGDTFDIHGGGQDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN W+HNGF+ + G KMSKS GNF + E+LE KF G Sbjct: 233 HENEIAQSKCAYH-GNFANYWLHNGFIQINGDKMSKSLGNFFLLREILE--KFSGN---- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 V+RL +L THYR+PI+F+ + + + + L Sbjct: 286 -VVRLFILSTHYRKPINFSFENIEDTKKAL 314 >gi|302039377|ref|YP_003799699.1| cysteinyl-tRNA synthetase [Candidatus Nitrospira defluvii] gi|300607441|emb|CBK43774.1| Cysteinyl-tRNA synthetase [Candidatus Nitrospira defluvii] Length = 486 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 185/504 (36%), Positives = 272/504 (53%), Gaps = 68/504 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL F+ + P +RMYVCG TVYD+ HIG+AR +VFDVL R L Y Sbjct: 2 LRLYNTLSGSKEPFEPLVPGKVRMYVCGVTVYDYCHIGHARSALVFDVLRRYLEY--SGF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +N TD+DDKII+RA+++ S +T+ + +D +L T +PR Sbjct: 60 VVEFAKNFTDVDDKIIKRAKEQGVSC------EHVTTTYINAYYEDMEKLGVRRATLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +++ L+ ++ G AY + ++ F YG S+R +D+ + G RV Sbjct: 114 ATEHIAEIVRLVDTLLAKGMAYRVDGDVYFQVDRYAVYGRLSKRNVDDLQAGARVDVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAM+ +LG+ FDIHGGG+DLIFPH Sbjct: 174 KRHPMDFALWKGSKPGEPSWDSPWGQGRPGWHIECSAMAMRHLGETFDIHGGGMDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSC A E A W+HNGF+ + KMSKS GNF TI E+ + + WP Sbjct: 234 HENEIAQSCGATGKE-FARYWVHNGFVQINQEKMSKSLGNFFTIREIFQKSE-----WPD 287 Query: 305 PV----IRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDP------- 349 V +R +L THYR P+DF+ Q L EA+ L+ + + + S + P Sbjct: 288 TVTGEMLRYFLLTTHYRSPLDFSDQSLKEAKNALNGFYDLFERLNESAPVHSPGDQSMQE 347 Query: 350 -------AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHIL 392 A ++A+ +DLNT +A+ AL L ++ K + + F A +L Sbjct: 348 AMVRTREAFVAAMDDDLNTPNALAALQMLRGDTNKALEAGLSGEMRQMVRQEFRALGIVL 407 Query: 393 GI--------EVCKEHLNKNISIA---------IEKLVQERLILLKMKKFSSADYIRKQL 435 G+ ++ ++ + + A I + RL + K + AD +R +L Sbjct: 408 GLLQTDTWRFKIQQQQPSSGGAEASTGTLSDEDIADKLAARLAAKRSKNYQLADQLRAEL 467 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 S G +ED ++ +RWK+ Sbjct: 468 ASHGITIEDRQDG-----TSRWKR 486 >gi|330975115|gb|EGH75181.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 460 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 263/478 (55%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 TEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|312794405|ref|YP_004027328.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181545|gb|ADQ41715.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 465 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/470 (38%), Positives = 256/470 (54%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF+ ++ + ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLSQTKEEFEPLEKNKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGITV------FELAKRFIEEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++++ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVSINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKGIIDPA 350 +RL ML HYR+P++F++ + +AE+ L+ +S + + A Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDKLKAA 344 Query: 351 V-------LSALYNDLNTVSAIQALHKLARE------STKNHDLLPI---FNASAHILGI 394 + + A+ +DLNT A L ++ RE S L + ILGI Sbjct: 345 IEDLKAKFIEAMEDDLNTAEATGYLFEMVREINTHANSCSKETLTFVKDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I I +LV++R K K F+ AD IR +L+S G+I+ D Sbjct: 405 LEQYGAKEEAIPQEILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLD 454 >gi|325981668|ref|YP_004294070.1| cysteinyl-tRNA synthetase [Nitrosomonas sp. AL212] gi|325531187|gb|ADZ25908.1| cysteinyl-tRNA synthetase [Nitrosomonas sp. AL212] Length = 459 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 181/464 (39%), Positives = 264/464 (56%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ +F I P +++YVCG TVYD+ H+G+AR ++VFD + R + Sbjct: 2 LKIYNSIAREKQDFVPITPGKVKLYVCGMTVYDYCHLGHARVLVVFDTVVRWFEA--NDF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA++ N++I +T + Q +D+ L +PTH+P Sbjct: 60 TVNYVRNITDIDDKIIKRAQEN------NESIEALTQRFIQAMNEDSVALGVSSPTHEPC 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+H+ MI +I ++ AY+A+N ++ F + P YG S + +++ + G RV Sbjct: 114 ATHHVKSMIGMISTLVEKNLAYQAHNGDVYFSVHNFPGYGKLSGKSLNDLRAGERVDIDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP WESPWG GRPGWHIECSAM +LG+ FDIHGGG DL FP Sbjct: 174 SKKDPLDFVLWKSAKSGEPFWESPWGPGRPGWHIECSAMCEQFLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF T+ E+L + + Sbjct: 234 HHENEIAQSEGA-HDHPFVNYWMHNGFVRVDNEKMSKSLGNFFTVREIL-------KLYQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 V+R +L HYR P++++ Q L + ++ L + I A + Sbjct: 286 PEVVRFFILRAHYRSPLNYSDQHLKDTKLALDRLYIALKEVEPISVARVDWNYPYAQKFK 345 Query: 354 -ALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT AI L LA + ++ H L L + +E+L + + Sbjct: 346 RAMDDDFNTPDAIALLFDLASDINKTGSREHAGLLKALGGLLGLLQQNPQEYLQNKAASS 405 Query: 409 --------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E+L+QER+ K ++S AD IRKQL+ +G ILED Sbjct: 406 ELNSSAHDVEQLIQERINARKEGRYSDADTIRKQLQEQGIILED 449 >gi|297826557|ref|XP_002881161.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi|297327000|gb|EFH57420.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] Length = 562 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 192/496 (38%), Positives = 270/496 (54%), Gaps = 72/496 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K++ ++NT+ RK F+ + MYVCG T YD +HIG+AR + FDVL R L++ Sbjct: 63 KELWLHNTMSRKKELFKPKIEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGY 122 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V+YVRN TD+DDKII RA + D IS+ + + ++F +D +L CL P+ Q Sbjct: 123 E--VSYVRNFTDVDDKIIARANELG-----EDPISL-SRRFCEEFKRDMEQLQCLDPSVQ 174 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P ++HIPQ++ LI+ I+ +G+AY+ + +I F P YG S RK+++ + G RV Sbjct: 175 PLVSDHIPQIVDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVD 234 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+PADF LWK + EP WESPWGRGRPGWHIECSAMS+ YLG FDIHGGG+DL+F Sbjct: 235 TRKKHPADFALWKTAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVF 294 Query: 243 PHHENEIAQSCCADRIEKTANI--WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQSC A ++NI WIHNGF+ ++ KMSKS GNF TI ++++ Sbjct: 295 PHHENEIAQSCAAC---DSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL------ 345 Query: 301 SWPAPVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKWPQT------ 340 + +RL ++ THYR PI+++ Q L + E LL + T Sbjct: 346 -YHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESLLGEKDSTFGNDSV 404 Query: 341 -----------------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 S S ++ P L+A+ L T++ I K +++ + L Sbjct: 405 PSDTLTTINTFHSEFVASMSDDLLTPVTLAAMSEPLKTINDIIHTRKGKKQARREESLKA 464 Query: 384 IFNASAHILGI------------EVCKEHLNKNISIAIEKL---VQERLILLKMKKFSSA 428 + +L I E KE K + E + VQER K K++ + Sbjct: 465 LETTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLEEEDVLQRVQERTDARKNKEYERS 524 Query: 429 DYIRKQLESKGFILED 444 D IRK L S G L D Sbjct: 525 DAIRKDLASVGIALMD 540 >gi|292491058|ref|YP_003526497.1| cysteinyl-tRNA synthetase [Nitrosococcus halophilus Nc4] gi|291579653|gb|ADE14110.1| cysteinyl-tRNA synthetase [Nitrosococcus halophilus Nc4] Length = 484 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 193/489 (39%), Positives = 268/489 (54%), Gaps = 65/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ EF I+P +RMYVCG TVYD H+G+AR M+VFDV+ R LR E Sbjct: 2 LRIYNSLTRRKEEFVPIEPGKVRMYVCGMTVYDLCHVGHARVMVVFDVVARYLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I +T++ + +D L L P +PR Sbjct: 61 -VTYVRNITDIDDKIIRRAHER------GENIQELTARYIEALHEDAEGLQILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + +I ++Q ++ G+AY+ N +I +D S YG+ S +++DE + G RV Sbjct: 114 ATESMEAIIAMVQRLLEQGYAYQGENGDIYYDVSHFEGYGALSGKQLDELRAGERVQVSE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKPNEPAWDSPWGPGRPGWHIECSAMSTQALGPHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A K N W+HNGF+ ++ KMSKS GNF T+ E+LE + Sbjct: 234 HHENEIAQSEAATGC-KFVNYWMHNGFVRVDDEKMSKSLGNFFTVREVLE-------HYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTSKGII------------- 347 V+R +L +HYR P+++T Q+L A+ +++ + +GI Sbjct: 286 PEVLRYFILSSHYRSPLNYTEQQLETAQAAVTRLYTALRGMPGEGISISAQGSAQELAEG 345 Query: 348 -DPAV---LSALYNDLNTVSAI-------QALHKLARESTKNH-----DLLPIFNASAHI 391 DP V A+ +D NT A+ AL++ E K+ LLP A + Sbjct: 346 DDPFVQRFCEAMDDDFNTPEALALLNEIRHALNRAREEGDKDKVQYLARLLPSLGAILGL 405 Query: 392 LGIE----------------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 L E V E IE+L+ +R K K +++AD++R L Sbjct: 406 LTQEPEQFLRDPRQAAAPSIVSAEGEAALSDGDIEQLIAQRTAARKNKDWAAADHLRDVL 465 Query: 436 ESKGFILED 444 + +G LED Sbjct: 466 KKQGITLED 474 >gi|91793850|ref|YP_563501.1| cysteinyl-tRNA synthetase [Shewanella denitrificans OS217] gi|123356646|sp|Q12L98|SYC_SHEDO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91715852|gb|ABE55778.1| cysteinyl-tRNA synthetase [Shewanella denitrificans OS217] Length = 459 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 188/480 (39%), Positives = 265/480 (55%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSMSREKQEFKPITPGKIGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + T + KD L + P +P+ Sbjct: 61 -VNFQRNITDVDDKIIKRAAEN------NESCDALTERLTAEMHKDFDALNMVRPDFEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I ++Q ++ GHAY A + +++F +S YG S + ID+ + G RV + Sbjct: 114 ATLHMPEIIEMVQRLLDRGHAYVAPDGDVLFSVASYKEYGRLSGQNIDQLQAGARVEIDH 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 NKQNPMDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNGKHLGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------KHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVL---SA 354 A +R +L HYR ++++ L +A L + + + D V SA Sbjct: 286 AQTVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAFKDLDLTVTAAPADEYVTKFKSA 345 Query: 355 LYNDLNTVSAIQALHKLARE----STKNHDLLPIFNAS----AHILG-----IEVCKEHL 401 + +D NT A L + RE T + S A +LG IE + Sbjct: 346 MNDDFNTPEAYSVLFDMVREINRLKTTDMGAASALGVSMKQLADVLGIVSVDIETFFKGS 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + +A IE L+ ER K +++AD R +L G +LED G+ T WK+K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWAAADVARDRLNQLGVVLED------GENGTTWKKK 459 >gi|218778624|ref|YP_002429942.1| cysteinyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] gi|218760008|gb|ACL02474.1| Cysteinyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] Length = 474 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 192/492 (39%), Positives = 264/492 (53%), Gaps = 60/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ + P ++ MYVCGPTVYD +HIG+AR +VFD+++R L+ E Sbjct: 3 LTLYNTLTRQKETFKPLKPGHVSMYVCGPTVYDSSHIGHARSAVVFDIVFRYLQESGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA + I I +F +D LA L PT +PR Sbjct: 62 -VTYVRNFTDVDDKIINRANERDMDCQALSEIYI------DEFHRDMDALAVLRPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I + ++ GHAY + ++ FD S +YG S RK+++ + G RV Sbjct: 115 ATEFIKEIIEVTSKLVEKGHAYVVDGDVYFDVRSFESYGKLSGRKLEDMEAGARVKVDSR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP WESPWG GRPGWHIECSAMS LG+ FDIHGGG DLIFPH Sbjct: 175 KKDPFDFALWKAKKPGEPAWESPWGEGRPGWHIECSAMSWSRLGETFDIHGGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS A ++ W+HNGF+N++ KMSKS NF+T+ E+L+ + Sbjct: 235 HENEVAQSEAA-FGQQFVRYWMHNGFVNIDSEKMSKSLNNFLTVKEILD-------QFHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVLSA----- 354 +RL +L HYR P+DFT Q + EA L + + G+ D +S Sbjct: 287 EAVRLFLLSKHYRSPVDFTEQAMKEAASGLDRVYSCLQRILESVGGLDDDFQISGHWSRF 346 Query: 355 ---LYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNASAHI------LGI---- 394 + +D NT A+ L + R+ + D + A A I LG+ Sbjct: 347 CACMDDDFNTAGALGILFEAVRDVNRLLDGDLTGDDQVRATEAGAAIVKMGGVLGMFQED 406 Query: 395 -----EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 E KE ++ ++ L+ +R K K +++AD IR QL G +ED Sbjct: 407 PVAYFEGKKEQAAQDGGFDPAMVDDLIAKRSQARKDKDWNTADAIRDQLTEMGVAIED-- 464 Query: 447 NPDNGQRMTRWK 458 PD T WK Sbjct: 465 TPDG----TIWK 472 >gi|15677904|ref|NP_275072.1| cysteinyl-tRNA synthetase [Neisseria meningitidis MC58] gi|30316184|sp|Q9JXE6|SYC_NEIMB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|7227346|gb|AAF42401.1| cysteinyl-tRNA synthetase [Neisseria meningitidis MC58] gi|325139404|gb|EGC61944.1| cysteinyl-tRNA synthetase [Neisseria meningitidis CU385] gi|325201129|gb|ADY96584.1| cysteinyl-tRNA synthetase [Neisseria meningitidis H44/76] Length = 473 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 345 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 346 DPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|325127358|gb|EGC50293.1| cysteinyl-tRNA synthetase [Neisseria meningitidis N1568] Length = 473 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 258/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 D + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 346 AFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGSAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|304413758|ref|ZP_07395202.1| Cysteinyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] gi|304283849|gb|EFL92243.1| Cysteinyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] Length = 506 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 191/486 (39%), Positives = 269/486 (55%), Gaps = 52/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ ID I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 43 LKIFNTLSRQKEIFRPIDAGKIGMYVCGITVYDLCHIGHGRTFVAFDVIVRYLRYL--DY 100 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA + N+ +T + + +D L L P +P+ Sbjct: 101 DLTYVRNITDIDDKIIKRAAEN------NETCQQLTERMMIEMYRDFDALNILRPNEEPQ 154 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I LI+ +I HAY A+ +++F S PNYG SR+ ++ + G RV Sbjct: 155 ATAHITEIIALIKKLIEGKHAYIAADGDVVFAVKSAPNYGLLSRQNLENLQAGARVAIAD 214 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWKR+ P +P W+SPWG GRPGWHIECSAM++ LG+ FDIHGGG DL+FP Sbjct: 215 GKEDPMDFVLWKRALPGDPSWDSPWGAGRPGWHIECSAMNAKQLGRHFDIHGGGSDLLFP 274 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H G + +E KMSKS NF TI +LL+ + Sbjct: 275 HHENEIAQSTCAHG-DPYVNYWMHTGMVMVEKNKMSKSLNNFFTIRDLLD-------HYD 326 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGI---IDPAVLS 353 A +R ++ HYR +D++ + L ++ I L + +T+++ + Sbjct: 327 AETVRYFLMSAHYRSQLDYSEENLRQSRIALERLYIALRGTDETASAAAAGENFEKRFRD 386 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHD------LLPIFNASAHILGIEVCK-EH---- 400 A+ +D NT A L +ARE K D L + A +LG+ K EH Sbjct: 387 AMDDDFNTPEACAVLFDIAREVNRLKTEDNAAASGLAATLRSMAQVLGLLTQKPEHFLQA 446 Query: 401 -----LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + K+ IA IE L+++R + K + AD R QL LED G + Sbjct: 447 VNHSEIAKDTEIAKIEALIEQRNTARQQKNWVLADEARHQLNEMKITLED------GPQG 500 Query: 455 TRWKQK 460 T W++K Sbjct: 501 TTWRRK 506 >gi|316983974|gb|EFV62953.1| cysteinyl-tRNA synthetase [Neisseria meningitidis H44/76] Length = 587 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 118 IYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 172 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 173 YPLTYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEP 226 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 227 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 286 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 287 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 346 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 347 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 406 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 407 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 459 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 460 DPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGL 519 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 520 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 577 >gi|323144957|ref|ZP_08079517.1| cysteine--tRNA ligase [Succinatimonas hippei YIT 12066] gi|322415236|gb|EFY06010.1| cysteine--tRNA ligase [Succinatimonas hippei YIT 12066] Length = 470 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 193/482 (40%), Positives = 265/482 (54%), Gaps = 52/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NT+ RK EF+ I+ I MYVCG TVYD HIG+AR + FD++ R LRY G K Sbjct: 15 LQIHNTISRKKEEFKPINEGQIGMYVCGVTVYDLCHIGHARTFVNFDMVVRYLRYR-GYK 73 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII+RA + S + + KD L + P +PR Sbjct: 74 -VRYIRNITDIDDKIIKRAHERKVSA------KELAENFIVEMHKDFDALNIMRPDEEPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP++I L+Q +I +G+AY A+N +++F + YG S + ++E + G R+ + Sbjct: 127 ATETIPEIIALVQRLIDNGNAYVADNGDVMFAIDTFKQYGRLSGQNLEELEAGARIEIEK 186 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ YLG+ FDIHGGG DLIFP Sbjct: 187 TKRNPFDFVLWKMSKPGEPSWSSPWGDGRPGWHIECSAMNLKYLGENFDIHGGGSDLIFP 246 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA K N W+H+G + + KMSKS NF TI ++LE + Sbjct: 247 HHENEIAQSCCACH-SKYVNYWMHSGMVMINHEKMSKSLNNFFTIRDVLE-------HYD 298 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVLSAL 355 A IR +L YR P+++T + L +A+ L++ P + + + Sbjct: 299 AETIRFFLLSAQYRSPLNYTQENLDKAKASLARLYTALRDVVPVKAEGEDEYTKRFKELM 358 Query: 356 YNDLNTVSAIQALHKLARESTKNH---------------DLLPIF--NASAHILGIEVCK 398 +D NT A+ L LA+ K +L I N S+ + G E Sbjct: 359 DDDFNTPGAMAVLFDLAKAVNKEEGETKAKLAGRLVELGSVLGILYQNPSSFLKGAESSD 418 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N +S+ IE L+QER K F +AD R +L + G +LED G T W+ Sbjct: 419 ---NDEVSV-IEALIQERKDARARKDFKAADAARDKLTAMGIVLED------GPSGTTWR 468 Query: 459 QK 460 +K Sbjct: 469 RK 470 >gi|6899996|emb|CAB71305.1| cysteinyl tRNA synthetase [Clostridium sticklandii] Length = 443 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/464 (40%), Positives = 268/464 (57%), Gaps = 55/464 (11%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY+F HIGNARP ++FD + Y E VTYV+N TD+DDKII+RA +E Sbjct: 1 MYVCGPTVYNFFHIGNARPFMIFDAFRNYMEYRGYE--VTYVQNFTDVDDKIIKRANEEG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 S PI + K ++ KD L T PR T +I +I I+++I G AYE Sbjct: 59 IS-PIE-----VAEKYIAEYFKDADALGIKRATVHPRVTENIENIITFIEDLISKGFAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 N ++ F++ + YG S++ ++E +G R+ KK+P DF LWK E GW+SP Sbjct: 113 LNGDVYFNSQAYKEYGKLSKQNLEELNLGARIDVNDEKKHPIDFALWKAKKEGEIGWQSP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG GRPGWHIECS MS+ YLG DIH GG DLIFPHHENEIAQS A ++ A W+H Sbjct: 173 WGEGRPGWHIECSVMSARYLGDTIDIHAGGQDLIFPHHENEIAQS-EARSGKQFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N++ +KMSKS GNF T+ ++L +F G+ VIR +L HYR P++F+ + + Sbjct: 232 NGYINVDNQKMSKSLGNFFTVRDIL--SEFSGQ-----VIRFFLLSAHYRNPVNFSKELI 284 Query: 328 TEAEILLSKWPQT--------STSKGIIDPA---VLSALYN-----------DLNTVSAI 365 +A+ + + + S +KG ++ + ++SAL N D+NT AI Sbjct: 285 LQAKAGMERLANSKERLVFTISHAKGQMNESELELVSALENHRDRFIEAMDDDINTADAI 344 Query: 366 QALHKLARES----TKNHDL------LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 + +LAR S T+N L L +FN +L I + E + N + IEKL+++ Sbjct: 345 SIIFELARFSNTNVTENSSLEWAEKNLSLFNELTGVLNI-IKAEDTDSNDNEQIEKLIKD 403 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K K F+ AD IR +L+S G +ED + + T+WK+ Sbjct: 404 RVEAKKNKDFALADAIRDELKSMGIEIEDTR------QGTKWKK 441 >gi|330878748|gb|EGH12897.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 460 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 256/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ ++PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAVEPAGGEAFVERFTAAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRETGVTAAAGLAARLKQLACVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR Q+ + G +LED K Sbjct: 406 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGKG 452 >gi|285018667|ref|YP_003376378.1| cysteinyl-tRNA synthetase [Xanthomonas albilineans GPE PC73] gi|283473885|emb|CBA16387.1| probable cysteinyl-trna synthetase protein [Xanthomonas albilineans] Length = 466 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 191/486 (39%), Positives = 272/486 (55%), Gaps = 48/486 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 M ++++YN L R++ F+ +DP + YVCGPTVY++AHIGNAR +VFDVL +LLR Sbjct: 1 MPMRLRLYNNLTRQLDAFEPLDPHAGPTFYVCGPTVYNYAHIGNARGPVVFDVLAKLLRR 60 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + Y RNITD+DDKI A+ + +PI S IT + + +D L P Sbjct: 61 R--YGRLRYARNITDVDDKINAAAQAQ--GVPI----SAITDRFAAIYRQDMAALGVAPP 112 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P+AT HIPQ++ +IQ +I +GHAY A ++F +S +YG SRR +E G RV Sbjct: 113 DIEPQATTHIPQIVAMIQRLIDNGHAYPAEGHVLFAVASFADYGKLSRRDPEELLAGARV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++P DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG+ DIH GG+D Sbjct: 173 DVAPYKRDPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS CA A W+HNG L G KMSKS GN T++EL+ Sbjct: 233 LQFPHHENEIAQSQCAHGGATFARFWLHNGMLTFSGAKMSKSLGNIETVHELIAKH---- 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVLS 353 P +R A+L HYR+P+D++ +T+++ L + T +++ I V Sbjct: 289 ---PPEALRYALLSAHYRQPLDWSEALITQSKNTLDRLYGTLRDLSGYSAEPDIPAEVDI 345 Query: 354 ALYNDLNTVSAIQALHKLARES----TKNHDLLPIFNAS-AHILG--------------- 393 AL +DLNT A+ L LA + +K + P +A AH+ Sbjct: 346 ALDDDLNTPKALAELSALASRARTLLSKPEHIGPAEHAELAHVKANLLGAGLALGLLQQD 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 V + + +I+ L+ ER + + F+ AD IR+QL G +LED + Sbjct: 406 PNVWFQGADNADDASIQALIDERSAAKQRRDFARADAIRQQLADTGIVLEDTP------Q 459 Query: 454 MTRWKQ 459 RWK+ Sbjct: 460 GIRWKR 465 >gi|319775019|ref|YP_004137507.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3047] gi|329123076|ref|ZP_08251646.1| cysteine--tRNA ligase [Haemophilus aegyptius ATCC 11116] gi|317449610|emb|CBY85816.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3047] gi|327471631|gb|EGF17073.1| cysteine--tRNA ligase [Haemophilus aegyptius ATCC 11116] Length = 459 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 269/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G+R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGSRIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVVFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNEARAAKDWATADAARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|325143495|gb|EGC65816.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M01-240013] Length = 473 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 258/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 D + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 346 AFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGSAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|253999955|ref|YP_003052018.1| cysteinyl-tRNA synthetase [Methylovorus sp. SIP3-4] gi|253986634|gb|ACT51491.1| cysteinyl-tRNA synthetase [Methylovorus sp. SIP3-4] Length = 456 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 183/463 (39%), Positives = 261/463 (56%), Gaps = 41/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LKIYNSLAREKQTFVPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRTSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA++ ++I +TS+ +D RL + P +P+ Sbjct: 61 -VTYVRNITDIDDKIIKRAQEN------GESIQALTSRFITAMDEDAARLGVMRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I +I G AY A+N ++ + SS YG S + +++ + G RV Sbjct: 114 ATEHITGMLDMIAALIEKGFAYPADNGDVFYSVSSFAGYGKLSGKSLEDLRAGERVEIDQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAM + +LG FDIHGGG DL FP Sbjct: 174 YKRDPMDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMGACHLGPHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 234 HHENEIAQSEAANGC-TFVNYWMHNGFIRVDDEKMSKSLGNFFTIRQVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A V+R +L YR P++++ L +A L++ + +G+ P Sbjct: 286 AEVVRFFILRAQYRSPLNYSDHHLDDARQALTRL--YTALRGLALPTFTIDWQQPQAARF 343 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK----------EHL 401 +A+ +D NT A L +LA E + L A + + + E Sbjct: 344 KAAMDDDFNTSEAFAVLFELASEVNRTASLADAALLKALAGLLGLLQRDPETFLQGGESA 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE+ +Q RL + K F+ AD IRKQL +G +LED Sbjct: 404 QGRSADEIEQFIQLRLQARQSKNFAEADRIRKQLADEGILLED 446 >gi|167629446|ref|YP_001679945.1| cysteinyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] gi|229558718|sp|B0TC35|SYC_HELMI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167592186|gb|ABZ83934.1| cysteinyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] Length = 481 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/499 (37%), Positives = 262/499 (52%), Gaps = 65/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F + MYVCGPT YD+ H+GNARP++VFD + R L + E Sbjct: 3 LRVYNTLSREKETFVPHKAGRVGMYVCGPTTYDYIHLGNARPLVVFDTIRRYLEHVGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII RA++ I + + ++ +++ +D L T P+ Sbjct: 62 -VVYIQNFTDIDDKIIHRAKE------IGEDPIAMAARFVEEYYRDAKALNVRPATIHPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+ ++I +I ++ GHAYE ++ F S +YG S R +++ + G RV Sbjct: 115 VSAHMAEIIAMIGVLVEKGHAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGG DLIFPH Sbjct: 175 KRHPMDFALWKGAKPGEPSWDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A W+HNGF+ + KMSKS GNF T+ E+L K+F P Sbjct: 235 HENEIAQSEACTGTSPMARYWLHNGFITVNQEKMSKSLGNFFTLREIL--KRF-----PG 287 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPA---- 350 VIR +L THYR PIDF +QRL + L+ + S +G PA Sbjct: 288 DVIRFYLLSTHYRSPIDFDDSKLEAAQKGLQRLRTSRRLIEEALAASGKEGAERPAGQRE 347 Query: 351 ------------VLSALYNDLNTVSAIQALHKLAREST-----------KNHDLL----P 383 A+ +D NT A+ L LARE+ ++ LL Sbjct: 348 KLEEQWLAAKKGFREAMDDDFNTALALSMLFDLAREANTFLHGGFALTPEDRQLLLQVAE 407 Query: 384 IFNASAHILGIEV---CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 F A +LGI++ + + + L+ R K K +++AD IR L+ G Sbjct: 408 TFEELAGVLGIDLAGGAAAADDNTVDGLMNLLIGIRAEARKKKDWATADRIRDGLKELGI 467 Query: 441 ILEDYKNPDNGQRMTRWKQ 459 ++ED P RWK+ Sbjct: 468 VIED--TPQG----ARWKK 480 >gi|330897806|gb|EGH29225.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 460 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 263/478 (55%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|325206985|gb|ADZ02438.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M04-240196] Length = 473 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 257/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 D + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 346 AFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|82703002|ref|YP_412568.1| cysteinyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] gi|109894912|sp|Q2Y7U5|SYC_NITMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|82411067|gb|ABB75176.1| cysteinyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] Length = 464 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 191/482 (39%), Positives = 269/482 (55%), Gaps = 53/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L R+ EF + P +++YVCG TVYD+ H+G+AR M+VFD++ R R + Sbjct: 2 LKIHNSLAREKQEFIPLTPGKVKVYVCGMTVYDYCHLGHARVMVVFDMVQRWFRANRFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ ++I +T++ Q +D L P+ +PR Sbjct: 61 -VTYVRNITDIDDKIIRRAQEN------KESIEALTARFIQAMEEDAAALGVEPPSWEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ MI +IQ ++ AY A+N ++ + P YG S + +DE + G RV Sbjct: 114 ATRHVEDMIAMIQVLVDKKLAYPASNGDVYYAVHRFPGYGKLSGKSLDELRAGERVIVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HK +P DF+LWK + P EP W+SPWG GRPGWHIECSAM HYLG+ FDIHGGG DL FP Sbjct: 174 HKNDPLDFVLWKAAKPGEPQWDSPWGPGRPGWHIECSAMGEHYLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ + KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSEGA-HGHPFVNYWMHNGFVRVNDEKMSKSLGNFFTVREILA-------HFQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------IDPAV-- 351 V+R +L HYR P+++ +L +A L + + KGI DP Sbjct: 286 PEVVRFFILRAHYRSPLNYADMQLEDAGRALDR--LYTALKGIEVHDEVEIDWDDPYASR 343 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNHDLLP----IFNASAHILGI------EVCKEH 400 A+ +D NT A+ L LA E K LP + A +LG+ + ++ Sbjct: 344 FREAMNDDFNTPEALAVLFDLATEVNKTR--LPRDIALMKALGGVLGLLQQDPWKYFQQA 401 Query: 401 LNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +++ + A +E+L+Q+RL+ K + AD IRK+L ILED G T W Sbjct: 402 DSEDPAFAPEKVEQLIQQRLVARANKDYREADRIRKELMEANIILED------GPHGTTW 455 Query: 458 KQ 459 ++ Sbjct: 456 RR 457 >gi|262376233|ref|ZP_06069463.1| cysteinyl-tRNA synthetase [Acinetobacter lwoffii SH145] gi|262308834|gb|EEY89967.1| cysteinyl-tRNA synthetase [Acinetobacter lwoffii SH145] Length = 473 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 193/473 (40%), Positives = 276/473 (58%), Gaps = 51/473 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF I +YVCG TVYD+ HIG+AR ++ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRVEGQIDLYVCGMTVYDYCHIGHARTVVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII+RA + ++IS +TS+ +D +L CLAP P+AT Sbjct: 64 KYVRNITDIDDKIIKRANEN------GESISELTSRFIDAMNEDFAKLGCLAPDVAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 ++I QM +I N++ G AY +NN ++ F+ YG S RK+++ + G RV + Sbjct: 118 DYIDQMQAMIGNLVDKGTAYPSNNGDVYFEVEKFAKYGRLSGRKLEDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGADLTFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHAGFINVDGEKMSKSLGNFFTIRDVIE-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGI--------IDPAVL-- 352 V+R ++ +HYR P++++ L EA+ LS++ + T + + +D A++ Sbjct: 290 PEVVRYFIVSSHYRSPVNYSDVALKEAKNTLSRFYHSFKTYQAVYGDHLIETLDEALVER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI--EVCKE 399 +A+ +D NT AI L ++ +E +N + I+ A+ +ILG+ + E Sbjct: 350 FNAAMRDDFNTPEAIAVLFEINKELNRTVKEENAEQAAIYYATLRHLTNILGLVQQNVDE 409 Query: 400 HLNKNISI--------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L +I IE L+Q+R K K+F+ AD IR+ L +G +LED Sbjct: 410 FLKSDIGQEALGLSPEQIEDLIQQRQDAKKAKEFARADEIRQSLLDQGVVLED 462 >gi|189183685|ref|YP_001937470.1| cysteinyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda] gi|229470555|sp|B3CRX9|SYC_ORITI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189180456|dbj|BAG40236.1| cysteinyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda] Length = 478 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 193/488 (39%), Positives = 278/488 (56%), Gaps = 53/488 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL RK F ++ +++MYVCGPTVYD HIGNAR ++V+D+LYR+L YG + + Sbjct: 5 IYNTLSRKKERFVPLNCKSVKMYVCGPTVYDIPHIGNARSVVVYDLLYRVLSLLYGRQNI 64 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA++ + +I +T + T +F +D + L C PT +P+AT Sbjct: 65 TYVRNITDIDDKIINRAKE------LKISIFKLTHETTIKFHEDMSYLGCCNPTIEPKAT 118 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++I MI +I ++I G+AY ++ + F + +Y SRR D + +R + K Sbjct: 119 DNIDVMINIITSLIQTGNAYSTDDGHVYFAVKTFQDYNLLSRRTFDSMILNSRESSEPQK 178 Query: 186 KNPADFILWKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 ADF+LWK + ++ ++SPWG+GRPGWHIECSAMS +LG+ FDIHGGG DLI Sbjct: 179 SYFADFVLWKPANADNEDIDAVFDSPWGKGRPGWHIECSAMSYKFLGENFDIHGGGADLI 238 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS CA + A W+HNGFL ++G KMSKS NF+T+ +L + G Sbjct: 239 FPHHTNEIAQSRCAFPESRHALYWVHNGFLTVKGEKMSKSLNNFVTVRDLQKQNINGA-- 296 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------------KG- 345 +RL L THYR+P+DF + L +A+ +++ T S KG Sbjct: 297 ----AVRLMFLSTHYRKPLDFNDKSLNDAKNIINYLYDTIDSVNGTAQQQDNIKAEFKGN 352 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLA---RESTKNHDLLPIFNA---SAHILGIEVCKE 399 +SAL +DLN+ AI L +A R ++ D L + A ++++LGI + Sbjct: 353 AFTVEFISALLDDLNSPKAIACLLNIAKQIRRQNQSEDKLALTQALLYASNLLGILHNYQ 412 Query: 400 HL--------NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 + N N++ I+ L+ +R+ + K ++ AD IR QL S G L D Sbjct: 413 FIKDSNDVKDNSNVTPHEIDLLIAKRIQAKQDKDWNLADQIRSQLLSNGISL-----TDK 467 Query: 451 GQRMTRWK 458 T WK Sbjct: 468 ADGTTSWK 475 >gi|210608929|ref|ZP_03288066.1| hypothetical protein CLONEX_00246 [Clostridium nexile DSM 1787] gi|210152846|gb|EEA83852.1| hypothetical protein CLONEX_00246 [Clostridium nexile DSM 1787] Length = 476 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 192/479 (40%), Positives = 258/479 (53%), Gaps = 60/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 9 MKLYNTLSRRKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + N+ I+ + + KD + T P Sbjct: 68 -VNFVSNFTDVDDKIIKKAIEE--GVSANE----ISQRYIAECKKDMAGMNVKPATKHPL 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I G+AYE N + F T YG S + +D+ + G R V Sbjct: 121 ATEEICGMIEMIQELIDKGYAYEKNGTVYFRTRKFDEYGKLSHKNLDDLQSGGRSLLVSG 180 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG DIH GG DL+ Sbjct: 181 EDEKEDPLDFVLWKPKKEGEPAWESPWCDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLV 240 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 241 FPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKSLGNFRTVREISE-------Q 292 Query: 302 WPAPVIRLAMLMTHYREPIDFT-----------------------VQRLTEAEILLSKWP 338 + V+R ML HYR P++F+ ++ T AE + Sbjct: 293 YDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLTRIVTAVDNLKHLENATSAEAMTDVEK 352 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKN-----HDLLPIF 385 +T +A+ +D NT AI ++ +L + ES+K HDL+ Sbjct: 353 ETFEKTKEFVEGFETAMEDDFNTADAIASIFELVKFANTTATAESSKEYLKGLHDLIVKL 412 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+ V KE + ++ IEKL++ER K K F AD IR +L KG ILED Sbjct: 413 ---ADVLGLIVEKEE--ELLAEDIEKLIEERQAARKEKNFKRADEIRNELLEKGIILED 466 >gi|85858183|ref|YP_460385.1| cysteinyl-tRNA synthetase [Syntrophus aciditrophicus SB] gi|85721274|gb|ABC76217.1| cysteinyl-tRNA synthetase [Syntrophus aciditrophicus SB] Length = 550 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 200/499 (40%), Positives = 253/499 (50%), Gaps = 76/499 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K F I + +YVCG TVYD H+G+AR +VFDVL R L Y E Sbjct: 59 LKLYNTLNNKKEVFTPIREGRVGLYVCGITVYDVCHVGHARSAVVFDVLKRYLEYRGYE- 117 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY++N TD+DDKII RA E SI S I ++ KD RL L PT PR Sbjct: 118 -VTYIKNFTDVDDKIIARANAEGVSI------SEIANRYIASHDKDMDRLGVLRPTVTPR 170 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI LI + G AY + + + P YG S RK+++ G R+ H Sbjct: 171 ATEHIGEMIELISKLQKRGLAYAVDGNVYYAVERFPGYGKLSGRKLEDMMAGARIDVNEH 230 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK S P EP W+SPWG GRPGWHIECS MS YLG FDIHGGG DL+FPH Sbjct: 231 KNNPMDFALWKASKPNEPAWDSPWGPGRPGWHIECSVMSQKYLGDTFDIHGGGEDLVFPH 290 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + ANIWIHNGF+ + KMSKS GN TI E+L + A Sbjct: 291 HENEIAQSEGVTG-KPLANIWIHNGFVKINSEKMSKSLGNVFTIQEMLT-------RYHA 342 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------------PQTST 342 VIRL ML +HYR +DF+ + L+EA + ++ P+T T Sbjct: 343 EVIRLFMLQSHYRSAVDFSEESLSEARQGMDRFYGTLKAIQEVLAVAEEEASPISPETLT 402 Query: 343 SK---------GIIDPAVLSALYNDLNTVSAIQALHKLARE------------STKNHDL 381 K G+ D V A+ +DLNT AI L AR+ S + + Sbjct: 403 GKTAELYAHVQGLPDRFV-EAMDDDLNTARAIGYLFDAARQINGFIRDAKMAKSKEGWKV 461 Query: 382 LPIFNASAHILGIEVCKEHLNKNISI----------------AIEKLVQERLILLKMKKF 425 L + S LG + N ++ IE L+ +R K + Sbjct: 462 LALAGKSIKDLGYVLGLFQENPDVYFLQDREREIRKRGLEPAEIELLIADRWAARNDKDW 521 Query: 426 SSADYIRKQLESKGFILED 444 AD IR+ L KG +L+D Sbjct: 522 HKADEIRQLLTEKGIVLKD 540 >gi|94265990|ref|ZP_01289713.1| Cysteine--tRNA ligase [delta proteobacterium MLMS-1] gi|93453456|gb|EAT03872.1| Cysteine--tRNA ligase [delta proteobacterium MLMS-1] Length = 494 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 158/332 (47%), Positives = 215/332 (64%), Gaps = 16/332 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I I+NT + F + +++RMYVCG TVYD+ HIG+AR ++VFD+LYR LR+ + Sbjct: 3 ILIHNTKTNRKEPFTPLTDNHVRMYVCGITVYDYCHIGHARSVLVFDMLYRYLRHRRYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TDIDDKII+RA ++ S ++ + Q F +D L PT +P+ Sbjct: 62 -VTFVRNFTDIDDKIIKRAAEQQTSC------QELSQRFIQAFHEDMAALGTEPPTLEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+MI LI+ +I G AY A ++ F + YG S R +DE + G R+ Sbjct: 115 ATEHLPEMIALIEELIAKGLAYPAGGDVYFRVRNFTEYGKLSHRALDEMRSGARIAVNEL 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM YLG+ FDIHGGG DL+FPH Sbjct: 175 KEDPLDFVLWKGSKPEEPAWESPWGPGRPGWHIECSAMGRKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + AN WIH+GF+ ++ KM+KS GNF+TI ++L + +PA Sbjct: 235 HENEIAQSEGATG-KPFANFWIHHGFVTIKDEKMAKSLGNFLTIRDVL-------KQYPA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 V+RL + THYR P+D++ + +AE LS+ Sbjct: 287 EVLRLLLFSTHYRNPVDYSEAAMADAETALSR 318 >gi|83591300|ref|YP_431309.1| cysteinyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] gi|109894909|sp|Q2RFM3|SYC_MOOTA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83574214|gb|ABC20766.1| cysteinyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] Length = 476 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 194/496 (39%), Positives = 269/496 (54%), Gaps = 66/496 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL + EF ++P +RMYVCGPT Y++ H+GNARPM+VFD L R L Y + V Sbjct: 3 LYNTLTGRKEEFTPVEPGRVRMYVCGPTTYNYIHLGNARPMVVFDTLRRYLEYRNYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV+N TDIDDK+I RAR+EH + P+ +I + ++F KD L T PR + Sbjct: 61 LYVQNFTDIDDKVINRAREEHQA-PL-----VIAERYIEEFFKDADALNVKRATLYPRVS 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI +I I ++ G AY A+ ++ F+ P YG S+R E + G RV K+ Sbjct: 115 QHIDAIIAAIATLVERGFAYVADGDVYFEVEKFPAYGRLSKRTPGEMRAGARVEVNTSKR 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF LWK + P EP WESPWG GRPGWHIECS M+ YLG FDIHGGG DLIFPHHE Sbjct: 175 NPLDFALWKAACPGEPSWESPWGPGRPGWHIECSTMALKYLGPGFDIHGGGADLIFPHHE 234 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQ+ A W+HNGF+ + KMSKS GNF + ++L K+F P+ Sbjct: 235 NEIAQAEAQTGC-TFARFWLHNGFITVNQEKMSKSKGNFFLVRDIL--KRF------RPL 285 Query: 307 -IRLAMLMTHYREPIDFT----------VQRLTEAEILL--SKWPQTSTSKGIIDPA--- 350 +RL +L THYR PIDF ++RL LL ++ T T PA Sbjct: 286 AVRLYLLATHYRSPIDFDDAGLLAAERGLERLENTRRLLGEARCQLTGTGAETTVPARTS 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNAS---- 388 +SA+ +D NT A+ AL+ LARE T D + A+ Sbjct: 346 ALAGRAEELRQEFISAMDDDFNTARALAALYDLAREINSYLNGTTTIDPAALRTAAITFE 405 Query: 389 ---AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 +LG+ + ++ ++ +S ++ ++Q R + + +++AD IR +L+ G +LE Sbjct: 406 QLGGEVLGLFGQARQQVDDELLSGLMDLILQVRQEARQRRDWATADTIRDRLKELGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D R RWK+ Sbjct: 466 DTP------RGPRWKR 475 >gi|326790451|ref|YP_004308272.1| cysteinyl-tRNA synthetase [Clostridium lentocellum DSM 5427] gi|326541215|gb|ADZ83074.1| cysteinyl-tRNA synthetase [Clostridium lentocellum DSM 5427] Length = 472 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 189/489 (38%), Positives = 271/489 (55%), Gaps = 56/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL ++ EF+ I+P +RMYVCGPTVY+ HIGNARP IVFD + R E Sbjct: 2 IKIYNTLTKRKEEFKPIEPHKVRMYVCGPTVYNLIHIGNARPYIVFDTVRRYFESVGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII++A +E S + + ++ ++ +KD L TH PR Sbjct: 61 -VNYVQNFTDVDDKIIKKANEEGRST------NEVVTQYIEETLKDVNNLNVTPATHHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG--TRVPEK 182 T + ++I +I+ +I G+AYE N + FDT++ YG S++ ++E + G RV Sbjct: 114 VTEEMDRIIEMIKELIEKGYAYEINGTVYFDTAAFEQYGKLSKKVLEELEAGRSERVALT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKN DF+LWK EP WESPW GRPGWHIECSAM+ YLG DIH GG DL+F Sbjct: 174 EEKKNHMDFVLWKPKKEGEPYWESPWSNGRPGWHIECSAMAKRYLGDTIDIHAGGEDLVF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA+ E A+ W+HN FLN++ +KMSKS GNF T+ ++ G + Sbjct: 234 PHHENEIAQSECANGKE-FAHYWMHNAFLNIDNKKMSKSLGNFKTLRDV-------GEMY 285 Query: 303 PAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP--A 350 V+R ML HYR P++F +++R+ A+ LS + S + + A Sbjct: 286 GYDVVRFFMLNAHYRSPLNFSAELIESAKNSLERIKNAKATLSFALEHSQIADLTEEEKA 345 Query: 351 VLSAL-----------YNDLNTVSAIQALHKL-------ARESTKN---HDLLPIFNASA 389 +L L +D NT AI + +L A+E +L +FN Sbjct: 346 LLKELDDFKARFHEHMEDDFNTADAISIIFELVKFANTYAKEGASQPFVEAVLKLFNELT 405 Query: 390 HILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ILG+ ++ N++ I++ +++R K + F+ AD IR L+ +G ++ED + Sbjct: 406 DILGLIYDRKGNNEDGLSDEEIKEYIEKRTAAKKARDFAEADRIRDFLKDQGVLIEDTR- 464 Query: 448 PDNGQRMTR 456 G R R Sbjct: 465 --EGVRFKR 471 >gi|225631085|ref|ZP_03787816.1| Cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591218|gb|EEH12369.1| Cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 350 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 164/337 (48%), Positives = 222/337 (65%), Gaps = 18/337 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +K F D +++MYVCGPTVYD AHIGNAR ++V+DVL+RLL++ YG+ Sbjct: 2 VRLYNTLTKKKELFTPTDKDHVKMYVCGPTVYDTAHIGNARSVVVYDVLFRLLKFCYGK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I IT+ + F D + C PTH+P+ Sbjct: 61 -VTYVRNITDIDDKIINAASEK------NSNIESITTYYIKAFHDDMESINCKEPTHEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ +I LI++++ GHAYE++ + F+ S YG+ S +K DE G+RV + Sbjct: 114 ATENVDYIIKLIEHLLQSGHAYESDKHVYFNIESYHEYGALSGKKTDELVPGSRVEVNEN 173 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + ++ W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL Sbjct: 174 KKHPGDFVLWKPANDIDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A WIHNGFL + KMSKS N + + +LL++ G Sbjct: 234 QFPHHENEIAQSKSAFAGSMFAKYWIHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG-- 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 VIR A+L THYR+P+D+T +++A+ L+K+ Sbjct: 292 ----EVIRYALLKTHYRKPLDWTENVISDAQETLNKF 324 >gi|166031083|ref|ZP_02233912.1| hypothetical protein DORFOR_00765 [Dorea formicigenerans ATCC 27755] gi|166028930|gb|EDR47687.1| hypothetical protein DORFOR_00765 [Dorea formicigenerans ATCC 27755] Length = 468 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 187/476 (39%), Positives = 256/476 (53%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ +K EF ++ +RMYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTMSKKKEEFIPLEEGKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E + I+ + ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIAKANEEGVTA------EEISQRYIEECKKDMAGMNVKPATTNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI LIQ ++ G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIQLIQTLMDKGYAYEKNGTVYYRTRQFKEYGKLSHKNLDDLRSGERSLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W+SPW GRPGWH ECS MS YLG+ DIH GG DL+ Sbjct: 173 ADEKEDPLDFVLWKPKKEGEPFWKSPWSDGRPGWHTECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ + AN W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANG-KTFANYWMHNAFLNIDNRKMSKSLGNFRTVREISE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------------WPQTSTSK 344 + V+R ML HYR P++F+ + + A+ L + P T+ Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKSSLERIVNAVDNLNFLIKNAKDEPMTAEEA 344 Query: 345 GIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 + A A+ +D NT A+ A+ +L R S N D + + Sbjct: 345 ELFAQTDSFVKAFEDAMDDDFNTADAVAAIFELVRYSNTNADAEKTKEYLGKIKDLIVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+ V K+ + ++ IEKL++ER K K F+ AD IR +L KG IL+D Sbjct: 405 ADVLGLIVEKKE--EILAEDIEKLIEERQAARKAKDFARADAIRDELLEKGIILKD 458 >gi|152980026|ref|YP_001353798.1| cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|166200150|sp|A6SZV1|SYC_JANMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151280103|gb|ABR88513.1| Cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 464 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 190/469 (40%), Positives = 267/469 (56%), Gaps = 48/469 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F I+P +RMYVCG TVYD+ HIG+AR M+VFD++ R LR E Sbjct: 4 LKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + ++IS +T + +D L P H+PR Sbjct: 63 -VNYVRNITDIDDKIIKRAAEN------GESISALTQRFIDAMDEDAAALGVQKPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN++PQM+ LI+ + +G AY++++ ++ + P YG S + +D+ + G RV Sbjct: 116 ATNYVPQMLGLIEALERNGLAYKSSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNT 175 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S EP W S WG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 176 GKRDPLDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+L Sbjct: 236 QFPHHENEIAQSEGASQ-HTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLA------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-DPAVLS------ 353 + + V+R +L HYR ++++ L +A L++ + KG+ D A L Sbjct: 288 KYDSEVVRFFILRAHYRSQLNYSDAHLDDARNALTR--MYTALKGVAPDQAALDMTEAHA 345 Query: 354 -----ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 A+ +D NT A+ L +LA E TK+ L A I+G+ ++ L+ Sbjct: 346 LRFAEAMNDDFNTPLAVAVLFELANEINKTKSPALARQLVGLAGIVGLLQRPAQQFLHAG 405 Query: 405 IS---------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ +E+ ++ R+ K K F+ AD IR +L KG ILED Sbjct: 406 LANGEDGEMETFVVEQ-IEARVNAKKAKNFAEADRIRAELLEKGIILED 453 >gi|256827720|ref|YP_003151679.1| cysteinyl-tRNA synthetase [Cryptobacterium curtum DSM 15641] gi|256583863|gb|ACU94997.1| cysteinyl-tRNA synthetase [Cryptobacterium curtum DSM 15641] Length = 499 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 194/510 (38%), Positives = 269/510 (52%), Gaps = 93/510 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNT RK +F+ I+ +RMYVCGPTVY++ HIGNAR + FD++ R L + + Sbjct: 2 IRIYNTQTRKKEDFKTIEVGRVRMYVCGPTVYNYIHIGNARTFVSFDIVRRYLMWRGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TD+DDKII+RA +E DA I K T F++D + L P +PR Sbjct: 61 -VTFVQNVTDVDDKIIKRAGEEE-----CDAAEI-ARKYTDAFIEDMHAMGVLDPDKRPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP+MI L+Q +I GHAYEA ++ F S P YG S R IDE + G R H Sbjct: 114 ATEEIPEMIELVQRLIDTGHAYEAAGDVYFSVRSFPAYGHLSHRDIDELESGHRDLRASH 173 Query: 185 -------KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K++P DF +WK + P EP W+SPWG+GRPGWHIECSAMS YLG FD+HGGG Sbjct: 174 VEGIGDRKRDPLDFAIWKAAKPGEPSWKSPWGQGRPGWHIECSAMSRKYLGLPFDVHGGG 233 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENE AQS A E N W+H+G L + KMSKS GNF+ + ++L K Sbjct: 234 ADLIFPHHENETAQSEAA-WGETFTNYWMHSGMLQINAEKMSKSLGNFLLLRDVL--KSV 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLT----------------------------- 328 RS +R+ ML THYR P+DF+ +RLT Sbjct: 291 NPRS-----LRMLMLQTHYRSPLDFSEERLTEAAAALARIEALVARLDWAITNAADIPSP 345 Query: 329 -EAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA-------RESTKNHD 380 +A+ LL++ QT + A+ +D NT A+ A+ L ++T + Sbjct: 346 LKAKELLAQVQQTRNE-------FIYAMDDDFNTAGALGAIFTLVGDLNTQLGDATVSRS 398 Query: 381 LLPIFNASAH-------ILGIEVCKE-------------------HLNKNISIAIEKLVQ 414 +P+ + + GIEV ++ + S A++ L+ Sbjct: 399 DIPVLRQARESIVELMGVFGIEVVQQPSESGYPAQVVDLAAELAGFAGTSPSDAVDALLG 458 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILED 444 R + K F+ AD +R ++ GF +ED Sbjct: 459 ARAAARQAKNFALADAVRDRMSDLGFTIED 488 >gi|145636711|ref|ZP_01792377.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittHH] gi|145270009|gb|EDK09946.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittHH] Length = 459 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 267/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSL--DY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 60 DLTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWSSPWGTGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVAFGGENFVATFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQEPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +S+AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNEARVAKDWSAADSARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|313667586|ref|YP_004047870.1| cysteinyl-trna synthetase [Neisseria lactamica ST-640] gi|313005048|emb|CBN86480.1| cysteinyl-trna synthetase (ec 6.1.1.16) (cysteine--trna ligase) (cysrs) [Neisseria lactamica 020-06] Length = 473 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 189/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 +YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 LYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG+GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGKGRPGWHIECSAMSENLFGNTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 345 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI 394 DP A+ +D +TV A+ L +LA E T N L A I+G+ Sbjct: 346 DPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGL 405 Query: 395 --EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|226309785|ref|YP_002769679.1| cysteinyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] gi|254765181|sp|C0ZIF7|SYC_BREBN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226092733|dbj|BAH41175.1| cysteinyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] Length = 468 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 182/491 (37%), Positives = 271/491 (55%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++ NT+ R+ F ++P ++MYVCGPTVY++ HIGNARP IVFD L R L+Y E Sbjct: 3 IQLTNTMTRRKEPFHTLEPGKVKMYVCGPTVYNYIHIGNARPAIVFDTLRRYLKYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+NITD+DDK+I A QE ++ + + T + D L P QPR Sbjct: 62 -VTFVQNITDVDDKLIRVANQEGVTV------KEVADRYTDAYNADLKSLNVSPPDIQPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 IP++I +Q +I G AYE+ ++ F T YG S + +D+ + G RV Sbjct: 115 VMQTIPEIIEFVQGLIEKGFAYESEGDVYFRTGRFQEYGKLSHQPLDDLQAGARVEINEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E W+SPWG GRPGWHIECSAM+ +LG+ DIH GG DL+FPH Sbjct: 175 KEHPLDFVLWKAAKTGEVTWDSPWGEGRPGWHIECSAMALKFLGEEIDIHAGGTDLVFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C ++ A W+HNG LN++ KMSKS GNF+ +L ++KFGG+ Sbjct: 235 HENEIAQSECFTGKV--FARYWLHNGMLNIDNEKMSKSLGNFLLARDL--SEKFGGQ--- 287 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSK--------- 344 +IR ML HYR PI+F+ + R+T A LS T+ ++ Sbjct: 288 --LIRFFMLQGHYRNPINFSEELIEQAANGLDRITTAYTNLSHRLDTARAEEPNDQAQEQ 345 Query: 345 ----GIIDPAVLSALYNDLNTVSAIQALHKLARES-----------TKNHDLLPIFNASA 389 G + ++ + +D+NT +AI + + +E+ T+ + + Sbjct: 346 ARIIGELRERFIAEMDDDINTANAITVIFDVVKEANLYLRHQNVGETEVRAYMDLLVELT 405 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG+++ +E + + I+ L++ER K + F+ +D IR L +KG +LED P Sbjct: 406 EVLGLDIAEEQ--ELLDSEIDALIEERTEARKARNFARSDEIRDLLAAKGIVLED--TPQ 461 Query: 450 NGQRMTRWKQK 460 RW++K Sbjct: 462 G----VRWRRK 468 >gi|126697618|ref|YP_001086515.1| cysteinyl-tRNA synthetase [Clostridium difficile 630] gi|122974209|sp|Q18CD5|SYC_CLOD6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 468 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 263/476 (55%), Gaps = 57/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 4 VKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E S P + +K +++ D L T P+ Sbjct: 63 -VTYVQNFTDVDDKIINRSHEEGIS-P-----EEVAAKYIKEYFVDCDGLGIKRATVHPQ 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 116 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 176 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 235 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R KT + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 236 HENEIAQSEA--RSGKTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAV------- 351 ++R ML HYR P++F+ + L +A+ L + T T +++ + Sbjct: 287 LEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVEL 346 Query: 352 -----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 347 VKELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTG 406 Query: 391 ILGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L I K+ L+K+ IE+L+Q+R K K+F AD IR+QL G +LED Sbjct: 407 VLNIVNKKKDTVLDKD----IEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLED 458 >gi|226328546|ref|ZP_03804064.1| hypothetical protein PROPEN_02441 [Proteus penneri ATCC 35198] gi|225203279|gb|EEG85633.1| hypothetical protein PROPEN_02441 [Proteus penneri ATCC 35198] Length = 463 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 266/482 (55%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAITRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 61 -VNYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNIARPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIELTEALIKLGHAYVADNGDVMFAIDTDPDYGLLSRQDLEQLQAGARVEVAN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG+GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGKGRPGWHIECSAMNSKELGHHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + + + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTSLRGTDENAQPVGGEAFEAQFIDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L LARE + + L + A +LG +E EH ++ Sbjct: 346 MNDDFNTPEAYSVLFDLAREVNRLKAVDMNAANGLAAVLRKLAKVLGLLEQEPEHFLQSG 405 Query: 406 SIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + A IE L+Q+R K K +++AD R L + G +LED G + T W Sbjct: 406 AKADDASEVEKIELLIQQRNDARKNKDWAAADVARDALTAMGIVLED------GPQGTVW 459 Query: 458 KQ 459 ++ Sbjct: 460 RR 461 >gi|330952785|gb|EGH53045.1| cysteinyl-tRNA synthetase [Pseudomonas syringae Cit 7] Length = 460 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 264/478 (55%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIGAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPLAEPAGGEAFVERFSAAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVNAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|296449821|ref|ZP_06891588.1| cysteine--tRNA ligase [Clostridium difficile NAP08] gi|296877885|ref|ZP_06901905.1| cysteine--tRNA ligase [Clostridium difficile NAP07] gi|296261308|gb|EFH08136.1| cysteine--tRNA ligase [Clostridium difficile NAP08] gi|296431082|gb|EFH16909.1| cysteine--tRNA ligase [Clostridium difficile NAP07] Length = 467 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 263/476 (55%), Gaps = 57/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 3 VKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E S P + +K +++ D L T P+ Sbjct: 62 -VTYVQNFTDVDDKIINRSHEEGIS-P-----EEVAAKYIKEYFVDCDGLGIKRATVHPQ 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 115 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 175 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R KT + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 235 HENEIAQSEA--RSGKTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAV------- 351 ++R ML HYR P++F+ + L +A+ L + T T +++ + Sbjct: 286 LEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVEL 345 Query: 352 -----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 346 VKELDGFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTG 405 Query: 391 ILGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L I K+ L+K+ IE+L+Q+R K K+F AD IR+QL G +LED Sbjct: 406 VLNIVNKKKDTVLDKD----IEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLED 457 >gi|237803609|ref|ZP_04591194.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025591|gb|EGI05647.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 460 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDTLTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALRGLPVAAPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVPAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|161869111|ref|YP_001598277.1| cysteinyl-tRNA synthetase [Neisseria meningitidis 053442] gi|161594664|gb|ABX72324.1| cysteinyl-tRNA synthetase [Neisseria meningitidis 053442] Length = 699 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 257/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 398 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 459 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------- 340 I E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 571 Query: 341 --STSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 S+ + D +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 572 EFDLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILED 689 >gi|225468582|ref|XP_002263803.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] gi|296087508|emb|CBI34097.3| unnamed protein product [Vitis vinifera] Length = 513 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 187/503 (37%), Positives = 267/503 (53%), Gaps = 81/503 (16%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNT+ ++ F+ + + MYVCG T YD +H+G+AR + FDVLYR L++ E Sbjct: 6 ELRVYNTMTQQKEIFKPVVDGKVSMYVCGVTAYDLSHLGHARAAVCFDVLYRYLQHLGYE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN TD+DDKII RA + + + ++S+ Q+++ D T L CL PT QP Sbjct: 66 --VTYVRNFTDVDDKIIRRANE------LGENPLTLSSRFCQEYLDDMTDLQCLTPTQQP 117 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R ++H+ Q+ +I II + AY + ++ F PNYG S RK+++ + G RV Sbjct: 118 RVSDHMDQIKDMITQIINNDCAYIIDGDVYFAVDKSPNYGRLSGRKLEDNRAGERVAVDS 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAMS+HYL FDIHGGG+DLIFP Sbjct: 178 RKRNPADFALWKAAKPDEPSWDSPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSC A + E + W+HNG + KMSKS GNF TI ++ + + Sbjct: 238 HHENEIAQSCAACQ-ESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITDL-------YH 289 Query: 304 APVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSKGIIDP 349 +R +L THYR P+++++ Q L + E LS + + + I P Sbjct: 290 PLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSPFQEVNGQNVCITP 349 Query: 350 AV---LSALYNDLNT---------------------------------------VSAIQA 367 A +S L D T +SA+Q+ Sbjct: 350 AAKDCISKLQTDFQTKMSDDLSTPHILNASLQEALRFINSGLNMLKKKQQKQQQLSAVQS 409 Query: 368 LHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA------IEKLVQERLILLK 421 L +L +E +L + + A+ EV ++ K + A + L++ER + K Sbjct: 410 LTELEKEVKGVLSVLGLLSTLAY---SEVLQQLKGKALRRAGMIEDDVLHLIEERALARK 466 Query: 422 MKKFSSADYIRKQLESKGFILED 444 K FS D IR L SKG L D Sbjct: 467 NKNFSRGDQIRADLASKGIALMD 489 >gi|66044980|ref|YP_234821.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a] gi|75502675|sp|Q4ZVN9|SYC_PSEU2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|63255687|gb|AAY36783.1| Cysteinyl-tRNA synthetase, class Ia [Pseudomonas syringae pv. syringae B728a] Length = 460 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 180/478 (37%), Positives = 264/478 (55%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIEAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAACLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR ++ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDRITAMGVLLED------GKGGTTWR 457 >gi|254492695|ref|ZP_05105866.1| cysteinyl-tRNA synthetase [Methylophaga thiooxidans DMS010] gi|224462216|gb|EEF78494.1| cysteinyl-tRNA synthetase [Methylophaga thiooxydans DMS010] Length = 463 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 183/474 (38%), Positives = 264/474 (55%), Gaps = 56/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L R+ F+ I + MYVCG TVYD H+G+AR M+VFDV+ R LR Sbjct: 2 LKIHNSLSRQKETFKPITAGKVNMYVCGMTVYDLCHVGHARVMVVFDVVTRYLRAL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + + +D L L P +P+ Sbjct: 60 NVTYVRNITDIDDKIIKRAAEN------GETIQALTERFIAEMHQDADALGVLRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +P+++ +++ +I G AY+A+N ++ +D S YG S R++D+ + G R+ Sbjct: 114 ATESMPEILAMVETLIGKGLAYKADNGDVYYDVSKFEAYGKLSGRQVDDLRAGERIAVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP WESPWG GRPGWHIECSAMS+H LG+ FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKEGEPAWESPWGMGRPGWHIECSAMSAHCLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + + N W+HNGF+ ++ KMSKS GNF T+ E+L +P Sbjct: 234 HHENEIAQSEGAHDCQ-SVNYWMHNGFVRIDDEKMSKSLGNFFTVREVLA-------QYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------- 350 A +R +L +HYR P+++ +L +A+ L+++ TS ++P Sbjct: 286 AEAVRYFILSSHYRSPLNYAEDQLEQAKAALTRF---YTSLRDVEPQPELNWQDDKEFGS 342 Query: 351 -VLSALYNDLNTVSAI-------QALHKLARESTKNH------------DLLPIFNASAH 390 A+ +D NT A+ QAL+K + + D+L +F A Sbjct: 343 RFAEAMDDDFNTALALSVMADVRQALNKALENNEADLAAYLAGLLLSFGDVLGLFQQDAE 402 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + E + + AI+ L+ ER K +S AD IR QL G ++ED Sbjct: 403 TFLVGDMAEDSDAD---AIDALIVERNQARADKNWSRADDIRDQLSEMGIVIED 453 >gi|319638892|ref|ZP_07993650.1| cysteinyl-tRNA synthetase [Neisseria mucosa C102] gi|317399796|gb|EFV80459.1| cysteinyl-tRNA synthetase [Neisseria mucosa C102] Length = 473 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 258/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFSPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGDLTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------- 340 I E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 341 ----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 346 EFDLSENANDYTSRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDANLAGCLKALGGIIGL 405 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|325208933|gb|ADZ04385.1| cysteinyl-tRNA synthetase [Neisseria meningitidis NZ-05/33] Length = 473 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 257/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGNTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------- 340 I E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 341 --STSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 S+ + D +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 346 EFDLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|302188937|ref|ZP_07265610.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642] Length = 460 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 180/478 (37%), Positives = 261/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI +++E + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVVE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + + A +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEAAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|212711245|ref|ZP_03319373.1| hypothetical protein PROVALCAL_02317 [Providencia alcalifaciens DSM 30120] gi|212685974|gb|EEB45502.1| hypothetical protein PROVALCAL_02317 [Providencia alcalifaciens DSM 30120] Length = 462 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 189/483 (39%), Positives = 268/483 (55%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LQIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TDIDDKII+RA + N+++ +T++ + KD L L P +PR Sbjct: 61 -VNYVRNVTDIDDKIIKRAAEN------NESVEELTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L +++I GHAY A+N +++F+ + P+YG SR+ +D+ + G RV Sbjct: 114 ATRHIHEIIELTESLIERGHAYVADNGDVMFEVKTDPSYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKTLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLEY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKG--IIDPAVLSA 354 A +R +L HYR +++T + L +A L + +++T G I A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDKSATPAGGEIYKSRFCEA 345 Query: 355 LYNDLNTVSAIQALHKLARE----STKNHDLLPIFNAS----AHILG---------IEVC 397 + +D NT A AL +ARE T+N D A A +LG ++ Sbjct: 346 MNDDFNTPEAYSALFDMARELNRLKTENMDAANGMAAQLRELAKVLGLLEQDPETFLQGG 405 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + IE L+++R + K ++ AD R L + G +LED T W Sbjct: 406 AQSEDDAEVAKIEALIKQRNDARQSKDWALADQARDALTAMGIVLED------SSAGTTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|307579311|gb|ADN63280.1| cysteinyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 442 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 181/449 (40%), Positives = 251/449 (55%), Gaps = 51/449 (11%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNAR +VF VL LLR YG + Y RNITD+DDKI A+++ Sbjct: 1 MYVCGPTVYNYVHIGNARGPVVFGVLAALLRRRYG--ALRYARNITDVDDKINTAAQEQ- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +PI S IT + + +D +L P +P AT H+PQ+I +I+ +I HAY Sbjct: 58 -GVPI----SAITERFCAAYREDMKKLGVEPPDIEPEATAHMPQIIAMIEQLIERQHAYV 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 A ++F +S +YG SRR +E G RV +K++P+DF+LWK S+ PGW+SP Sbjct: 113 AMEHVLFAVNSFADYGQLSRRDTEEMLAGARVEIAPYKRDPSDFVLWKPSSDQLPGWDSP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WGRGRPGWHIECSAM++ +LG+ DIH GG+DL FPHHENEIAQS CA A +W+H Sbjct: 173 WGRGRPGWHIECSAMAAAHLGETIDIHAGGIDLQFPHHENEIAQSRCAHGSSTFARVWMH 232 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF----- 322 NG LN EG KMSKS GN T++EL+ P +R A+L HYR+P+D+ Sbjct: 233 NGMLNFEGAKMSKSLGNIETVHELVAKH-------PPEALRYALLSAHYRKPLDWSEALI 285 Query: 323 -----TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES-- 375 T+ RL L+ +P ++ II + +AL +DLNT A+ L LA E+ Sbjct: 286 AQSVRTLNRLYGTLRDLAAYP----ARAIIPGNIEAALDDDLNTPQALAELATLANEARI 341 Query: 376 ----TKNHDLLPIFNASAHILGIEVC----------------KEHLNKNISIAIEKLVQE 415 T +H + A + + + N++ I+ L+ Sbjct: 342 QLADTTHHAAAEVTTALTRLKAKLLGAGLALGLLQQTPEAWFSQGTNESDETHIQALIDA 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILED 444 R + + F AD IR QL ++G +LED Sbjct: 402 RGAAKQARDFVRADAIRAQLAAEGIVLED 430 >gi|218767348|ref|YP_002341860.1| cysteinyl-tRNA synthetase [Neisseria meningitidis Z2491] gi|34222758|sp|Q9JWJ3|SYC_NEIMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|121051356|emb|CAM07647.1| cysteinyl-tRNA synthetase [Neisseria meningitidis Z2491] Length = 699 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 257/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 230 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 398 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGNTFDIHGGGADLQF 458 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 459 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------- 340 I E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 571 Query: 341 --STSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 S+ + D +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 572 EFDLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 689 >gi|71736729|ref|YP_273919.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|109894921|sp|Q48L06|SYC_PSE14 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71557282|gb|AAZ36493.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 460 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|309972789|gb|ADO95990.1| Cysteinyl-tRNA synthetase [Haemophilus influenzae R2846] Length = 459 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 268/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWPSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVVFGGENFAETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAVRLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSNDDEVAKIEALIKQRNEARAAKDWATADAARNELTAMGIVLED------GPNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|145639628|ref|ZP_01795231.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittII] gi|145642163|ref|ZP_01797732.1| cysteinyl-tRNA synthetase [Haemophilus influenzae R3021] gi|145271185|gb|EDK11099.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittII] gi|145273154|gb|EDK13031.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 22.4-21] gi|309750601|gb|ADO80585.1| Cysteinyl-tRNA synthetase [Haemophilus influenzae R2866] Length = 459 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 267/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGADQSAVVFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K + +AD R +L + G +LED G T W+ Sbjct: 404 AGSNDDEVAKIEALIKQRNEARAAKDWPAADAARNELTAMGIVLED------GPNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|68248628|ref|YP_247740.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 86-028NP] gi|319896490|ref|YP_004134683.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3031] gi|81336945|sp|Q4QPG7|SYC_HAEI8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68056827|gb|AAX87080.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 86-028NP] gi|317431992|emb|CBY80340.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3031] Length = 459 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 269/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVVFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE + K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNEARAAKDWATADAARNELIAMGIVLED------GPNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|309379306|emb|CBX22079.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 483 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 189/477 (39%), Positives = 255/477 (53%), Gaps = 58/477 (12%) Query: 8 YNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC-- 65 YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 15 YNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECGY 69 Query: 66 -VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+ Sbjct: 70 PLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPK 123 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 124 ATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDG 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FP Sbjct: 184 FKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQFP 243 Query: 244 HHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENEIAQS A I W+HNGF+ ++G KMSKS GNF TI Sbjct: 244 HHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTI 303 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 E+L + + V+R +L HYR P++++ L +A+ L++ T + D Sbjct: 304 REVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPAD 356 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI- 394 P A+ +D +TV A+ L +LA E T N L A I+G+ Sbjct: 357 PMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLL 416 Query: 395 -EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + I+ L+ R K ++ +D IR L ILED Sbjct: 417 QRDPTEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILED 473 >gi|294338858|emb|CAZ87192.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Thiomonas sp. 3As] Length = 460 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 190/463 (41%), Positives = 264/463 (57%), Gaps = 40/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R F I+P ++RMYVCG TVYD+ HIG+AR M+VFD+L R L+ G + Sbjct: 4 LHLHNTLTRGKDRFVPIEPGHVRMYVCGMTVYDYCHIGHARVMVVFDLLQRWLKAQ-GLR 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA+ + I +T + +D L PTH+PR Sbjct: 63 -VTYVRNITDIDDKIIRRAQDN------GETIRALTDRFIAAMHEDADALGVERPTHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ LI + G AY ++ ++ F + P YG S + +DE + G RV Sbjct: 116 ATDYVPQMLDLIGKLKTRGLAYRDSAGDVNFHVRAFPGYGKLSGKSLDELRAGERVEVDT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W S G GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKAAKPAEPEEVKWPSDDGPGRPGWHIECSAMSCALLGETFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN+W+HNGF+ ++G KMSKS GNF TI ++L+ Sbjct: 236 QFPHHENEIAQSEGASG-KPMANVWLHNGFVRVDGEKMSKSLGNFFTIRDILQHVD---- 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 A +RL ++ HYR P++++ + L +A L++ T+ PA L Sbjct: 291 ---AETVRLFIVRAHYRSPLNYSDEHLQDAHAALTRL-YTALDPFAELPARLDWSHPRAQ 346 Query: 353 ---SALYNDLNTVSAIQALHKLARESTKNHD----LLPIFNASAHILGIEVCKEHLNKNI 405 +A+ +DLNT A+ L +LA E K D L L + +E L Sbjct: 347 AFAAAMNDDLNTPEAMAVLFELATEVNKTGDADLAALLKGLGGVLGLLQQNPREFLQSKA 406 Query: 406 SIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +E+LVQ R+ + + F+ AD IR +L +KG +LED Sbjct: 407 AAVDAAWVEQLVQARIAAKQARNFAEADRIRAELSAKGIVLED 449 >gi|308390183|gb|ADO32503.1| cysteinyl-tRNA synthetase [Neisseria meningitidis alpha710] Length = 699 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 257/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 398 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 459 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 571 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 D + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 572 EFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631 Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + IE L+ R K ++ +D IR L ILED Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 689 >gi|254804107|ref|YP_003082328.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha14] gi|254667649|emb|CBA03462.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha14] Length = 475 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 261/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 6 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 60 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 61 YPLTYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 115 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 175 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 235 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 294 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----ST 342 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 295 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 347 Query: 343 SKGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 G+ + A +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 348 EFGLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 407 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S I+ L+ R K ++ +D IR L ILED Sbjct: 408 LQRDPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILED 465 >gi|255099211|ref|ZP_05328188.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-63q42] gi|255304994|ref|ZP_05349166.1| cysteinyl-tRNA synthetase [Clostridium difficile ATCC 43255] gi|328887507|emb|CAJ66866.2| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Clostridium difficile] Length = 465 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 263/476 (55%), Gaps = 57/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 1 MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E S P + +K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIINRSHEEGIS-P-----EEVAAKYIKEYFVDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 173 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R KT + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQSEA--RSGKTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYD 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAV------- 351 ++R ML HYR P++F+ + L +A+ L + T T +++ + Sbjct: 284 LEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVEL 343 Query: 352 -----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 344 VKELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTG 403 Query: 391 ILGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L I K+ L+K+ IE+L+Q+R K K+F AD IR+QL G +LED Sbjct: 404 VLNIVNKKKDTVLDKD----IEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLED 455 >gi|253581402|ref|ZP_04858628.1| cysteinyl-tRNA synthetase [Fusobacterium varium ATCC 27725] gi|251836766|gb|EES65300.1| cysteinyl-tRNA synthetase [Fusobacterium varium ATCC 27725] Length = 473 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 192/483 (39%), Positives = 274/483 (56%), Gaps = 57/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL KI EF+ + + MYVCGPTVY++ HIGNARP I FD + R Y G K Sbjct: 2 IKIYNTLSGKIDEFKPVKEGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL-APTHQP 123 V YV+N TD+DDK+I RA +E S+ I K + + +DT+++ A +P Sbjct: 61 -VKYVQNFTDVDDKMIRRANEEGVSLKD------IAEKYIKAYFEDTSKVNLKEAGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI +IQN+I G+AYEA ++ F+ + YG+ S++ +++ K G R+ Sbjct: 114 KATEHIGDMIEIIQNLIEKGYAYEAEGDVYFNVEKYKDGYGALSKQNVEDLKSGARIEVA 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 174 DIKKSPVDFALWKAAKEGEPSWDSPWGKGRPGWHIECSAMSHRYLGDTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ E A W+HNG++N+ G KMSKS G F+ + ++LE +F GR Sbjct: 234 PHHENEIAQSKCSCGGE-FARYWMHNGYININGEKMSKS-GTFMLLRQVLE--QFEGR-- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------TSTSKGIIDPAVL 352 VIRL +L HYR+P+DF+ L +A+ L + T +G D A L Sbjct: 288 ---VIRLFILGAHYRKPMDFSNYELNQAKSSLERIENALLRAKDALAADTKEGGADCAEL 344 Query: 353 S------------ALYNDLNTVSAIQALHKLARE----------STKNHDLLP-----IF 385 + A+ +D NT + A+ +L +E S K + + + Sbjct: 345 AEVLKSSSEKFVTAMDDDFNTAQGLGAIFELIKELNKALEGDKLSAKGKETVKETVDYVV 404 Query: 386 NASAHILGIEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N +LG+ + ++ N+ S +E +++ R K ++ +D IR +L G ++D Sbjct: 405 NIMQEVLGVILKLDNEVGNLTSELVEFILEMRREARADKNWAMSDKIRDRLAEMGIKIKD 464 Query: 445 YKN 447 K+ Sbjct: 465 GKD 467 >gi|238762909|ref|ZP_04623877.1| Cysteinyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] gi|238698920|gb|EEP91669.1| Cysteinyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] Length = 461 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLKRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY AN +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIAREHAYVAANGDVMFSVESDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNSKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE T + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKAEDMTAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|294671003|ref|ZP_06735859.1| hypothetical protein NEIELOOT_02710 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307490|gb|EFE48733.1| hypothetical protein NEIELOOT_02710 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 473 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 190/484 (39%), Positives = 256/484 (52%), Gaps = 66/484 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LTIYNTLTRKKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----E 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C +TYVRNITDIDDKII RA + + I +T++ Q +D L L P Sbjct: 57 CGYPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDI 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 111 EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGKRVE 170 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL Sbjct: 171 VDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADL 230 Query: 241 IFPHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 FPHHENEIAQS A I W+HNGF+ ++G KMSKS GNF Sbjct: 231 QFPHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNF 290 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----- 340 TI E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 291 FTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTP 343 Query: 341 ------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHIL 392 S + +A+ +D TV A+ L +LA E K +D L A I+ Sbjct: 344 AAAFELSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGII 403 Query: 393 GI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 G+ V N+ I I + Q R K ++ +D IR L Sbjct: 404 GLLQRDPTEFLQGGAVSDGLSNEEIDDLIARRKQAR----ADKNWAESDRIRDLLNEHKI 459 Query: 441 ILED 444 ILED Sbjct: 460 ILED 463 >gi|329117979|ref|ZP_08246692.1| cysteine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465867|gb|EGF12139.1| cysteine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 494 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 187/483 (38%), Positives = 260/483 (53%), Gaps = 58/483 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K + +YNTL R+ F IDP+N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 20 KPMLNLYNTLTRQKEAFSPIDPANVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR--- 76 Query: 62 GEKC---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 +C +TYVRNITDIDDKII RA + + I +T++ +D L L Sbjct: 77 --ECGYPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIAAMHEDADALGVLR 128 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 P +P+AT +IPQMI +I+++I G AY AN ++ + P YG S + +D+ + G Sbjct: 129 PDLEPKATENIPQMIAMIESLIQKGKAYPAANGDVYYAVREFPAYGQLSGKSLDDLRAGE 188 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 RV K++P DF+LWK + EP WESPWG+GRPGWHIECSAMS + G FDIHGGG Sbjct: 189 RVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGQGRPGWHIECSAMSENLFGDTFDIHGGG 248 Query: 238 LDLIFPHHENEIAQS-------CCADR--------IEKTANIWIHNGFLNLEGRKMSKSN 282 DL FPHHENEIAQS C D + W+HNGF+ ++G KMSKS Sbjct: 249 ADLQFPHHENEIAQSVGASGHTCGHDHTLTHHGKPVASHVKYWLHNGFIRVDGEKMSKSL 308 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-- 340 GNF TI ++L + + V+R +L HYR P++++ L +A+ L++ Sbjct: 309 GNFFTIRDVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALARLYTALK 361 Query: 341 ---------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA 389 S + +A+ +D TV A+ L +LA E K D L A Sbjct: 362 NTPPAGFALSETANNYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTRDAALSGCLKALG 421 Query: 390 HILGI--EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I+G+ E L + IE L+ R K ++ +D IR L ++ I Sbjct: 422 GIIGLLQRDPTEFLQGGTASDGLSNEEIENLIAMRKQARADKNWAESDRIRDLLTAQNII 481 Query: 442 LED 444 LED Sbjct: 482 LED 484 >gi|204930486|ref|ZP_03221416.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320420|gb|EDZ05623.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 461 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWTAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|325129292|gb|EGC52130.1| cysteinyl-tRNA synthetase [Neisseria meningitidis OX99.30304] gi|325135312|gb|EGC57933.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M0579] gi|325201281|gb|ADY96735.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M01-240149] Length = 473 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 258/478 (53%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 346 EFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 405 Query: 394 -----IEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPIEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|238751080|ref|ZP_04612576.1| Cysteinyl-tRNA synthetase [Yersinia rohdei ATCC 43380] gi|238710770|gb|EEQ02992.1| Cysteinyl-tRNA synthetase [Yersinia rohdei ATCC 43380] Length = 473 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 14 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 71 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 72 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 125 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 126 ATHHIPEIIELTERLIAREHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEIAD 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 186 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE + Sbjct: 246 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLEY-------YD 297 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + +A Sbjct: 298 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDVHAAPAGGAEFEARFRAA 357 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L LARE T + L AH+LG+ L Sbjct: 358 MDDDFNTPEAYSVLFDLAREVNRLKTEDITAANGLAAELRKLAHVLGLLEQDPELFLQSG 417 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 418 AQSDGDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 471 Query: 459 QK 460 +K Sbjct: 472 RK 473 >gi|255654140|ref|ZP_05399549.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-23m63] Length = 465 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 263/476 (55%), Gaps = 57/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 1 MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E S P + +K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIINRSHEEGIS-P-----EEVAAKYIKEYFVDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 173 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R KT + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQSEA--RSGKTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYD 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAV------- 351 ++R ML HYR P++F+ + L +A+ L + T T +++ + Sbjct: 284 LEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVEL 343 Query: 352 -----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 344 VKELDGFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTG 403 Query: 391 ILGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L I K+ L+K+ IE+L+Q+R K K+F AD IR+QL G +LED Sbjct: 404 VLNIVNKKKDTVLDKD----IEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLED 455 >gi|218184692|gb|EEC67119.1| hypothetical protein OsI_33924 [Oryza sativa Indica Group] Length = 523 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 187/503 (37%), Positives = 268/503 (53%), Gaps = 80/503 (15%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++T + F+ + MYVCG T YD++H+G+AR + FDVL+R L+Y E Sbjct: 21 ELRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYLKYLGYE 80 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + DA+S+ +S+ +F +D L CL PTH+P Sbjct: 81 --VNYVRNFTDIDDKIIKRANEAG-----EDALSL-SSRFIDEFHRDMYELQCLPPTHEP 132 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T HI Q+I LI I+ +G AY ++ F + P+Y S S RK+D+ + GTRV Sbjct: 133 RVTKHIEQIIDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKVDQNRPGTRVAVDA 192 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP WESPWGRGRPGWHIECSAMS+HYLG +FDIHGGG DLIFP Sbjct: 193 RKRNPADFALWKSAKEGEPSWESPWGRGRPGWHIECSAMSAHYLGNIFDIHGGGKDLIFP 252 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A E W+HNGF+N +G+KM+K++ NF TI +++ + Sbjct: 253 HHENELAQSQAA-YPESEVKCWMHNGFVNKDGQKMAKADKNFFTIRDIISL-------YH 304 Query: 304 APVIRLAMLMTHYREPID--------------FTVQRLTEAEILLSKWPQTSTSKGIIDP 349 +RL ++ THYR ++ + Q L + E +S + + I P Sbjct: 305 PMALRLFLMRTHYRSDVNHSDTALQFASGRLYYIYQTLHDGEETVSLYGEHKLENSI--P 362 Query: 350 A------------VLSALYNDLNTVSA--------------------------------- 364 A L + +DL+T +A Sbjct: 363 ADDQKLIEENHSNFLEKMSDDLHTTAALDHLMKLQQKLEHQKKKQSQKQQQQQQKKPEDY 422 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKL---VQERLILLK 421 IQAL L E T +L + S+ ++ K+ K + E+L +++R + K Sbjct: 423 IQALVALQNEVTDKLSILGLMPMSSLAEALKQLKDKALKRAGMTAEQLQQMIEQRTLARK 482 Query: 422 MKKFSSADYIRKQLESKGFILED 444 K F+ +D IR +L + G L D Sbjct: 483 NKDFAESDRIRTELSALGIALMD 505 >gi|313201928|ref|YP_004040586.1| cysteinyl-tRNA synthetase [Methylovorus sp. MP688] gi|312441244|gb|ADQ85350.1| cysteinyl-tRNA synthetase [Methylovorus sp. MP688] Length = 470 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 182/463 (39%), Positives = 260/463 (56%), Gaps = 41/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K YN+L R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 16 LKFYNSLAREKQTFVPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRTSGYD- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA++ ++I +TS+ +D RL + P +P+ Sbjct: 75 -VTYVRNITDIDDKIIKRAQEN------GESIQALTSRFITAMDEDAARLGVMRPDLEPK 127 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I +I G AY A+N ++ + SS YG S + +++ + G RV Sbjct: 128 ATEHITGMLDMIAALIEKGFAYPADNGDVFYSVSSFAGYGKLSGKSLEDLRAGERVEIDQ 187 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAM + +LG FDIHGGG DL FP Sbjct: 188 YKRDPMDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMGACHLGPHFDIHGGGQDLQFP 247 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 248 HHENEIAQSEAANGC-TFVNYWMHNGFIRVDDEKMSKSLGNFFTIRQVLE-------KYD 299 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A V+R +L YR P++++ L +A L++ + +G+ P Sbjct: 300 AEVVRFFILRAQYRSPLNYSDHHLDDARQALTRL--YTALRGLALPTFTIDWQQPQAARF 357 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK----------EHL 401 +A+ +D NT A L +LA E + L A + + + E Sbjct: 358 KAAMDDDFNTSEAFAVLFELASEVNRTASLADAALLKALAGLLGLLQRDPETFLQGGESA 417 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE+ +Q RL + K F+ AD IRKQL +G +LED Sbjct: 418 QGRSADEIEQFIQLRLQARQSKNFAEADRIRKQLADEGILLED 460 >gi|300311195|ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300073980|gb|ADJ63379.1| cysteinyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Length = 463 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 195/483 (40%), Positives = 270/483 (55%), Gaps = 50/483 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++KIYNTL R F I+P +R+YVCG TVYD+ HIG+AR ++VFD++ R LR E Sbjct: 3 ELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASGYE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKII+RA + + I+ +T++ +D L P H+P Sbjct: 63 --VTYVRNITDIDDKIIKRA------VENGETIAQLTNRFIDAMNEDAAALGVQRPDHEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT ++PQM+ LI + +G AY+A++ ++ + P YG S + +D+ + G RV Sbjct: 115 RATQYVPQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVN 174 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMSS LG FDIHGGG D Sbjct: 175 TGKRDPLDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 235 LQFPHHENEIAQSEGAHQ-HTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVL------- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA- 350 + + V+R +L HYR P++++ L +A L++ PQ + D A Sbjct: 287 KKYDPEVLRFFILRAHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGL--VADEAH 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGI--EVCKEHLNK 403 + AL +D NT AI L +LA E ++ + A A ILG+ E+L Sbjct: 345 AVRLADALNDDFNTPVAIAVLFELANEVNRSRSPVQARQLKALAGILGLLQREPGEYLKG 404 Query: 404 NISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 ++ A IE L+ R K F+ AD IR +L G ILED +T Sbjct: 405 GVAAAEGLGEAEIEALIAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGG-----LTE 459 Query: 457 WKQ 459 W++ Sbjct: 460 WRR 462 >gi|259909186|ref|YP_002649542.1| Cysteinyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|224964808|emb|CAX56330.1| Cysteinyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|283479232|emb|CAY75148.1| cysteine tRNA synthetase [Erwinia pyrifoliae DSM 12163] Length = 462 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 194/483 (40%), Positives = 264/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I NI MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGNIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESIERLTNRMIDEMHKDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A+N +++F S P YGS SR+ +D+ + G RV Sbjct: 114 ATRHIAEIIELVEKLITREHAYVASNGDVMFSVDSDPQYGSLSRQDLDQLQAGARVEVAA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLSEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L+ + Sbjct: 234 PHHENEIAQSTCA-HDGPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLQ-------HY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAVLS 353 A +R ++ HYR +++ L +A I L +T G + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTRATPAGGEEFEARFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI--EVCKEHLNK 403 A+ +D NT A AL LARE K D L +LG+ + ++ L Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKGEDPAAADGLAARLRVLGGVLGLLEQDPQQFLQS 405 Query: 404 NISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++I IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 406 GVNINDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|261400776|ref|ZP_05986901.1| cysteine--tRNA ligase [Neisseria lactamica ATCC 23970] gi|269209376|gb|EEZ75831.1| cysteine--tRNA ligase [Neisseria lactamica ATCC 23970] Length = 473 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 189/477 (39%), Positives = 255/477 (53%), Gaps = 58/477 (12%) Query: 8 YNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC-- 65 YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 5 YNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECGY 59 Query: 66 -VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+ Sbjct: 60 PLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 114 ATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDG 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FP Sbjct: 174 FKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENEIAQS A I W+HNGF+ ++G KMSKS GNF TI Sbjct: 234 HHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTI 293 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 E+L + + V+R +L HYR P++++ L +A+ L++ T + D Sbjct: 294 REVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPAD 346 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI- 394 P A+ +D +TV A+ L +LA E T N L A I+G+ Sbjct: 347 PMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLL 406 Query: 395 -EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + I+ L+ R K ++ +D IR L ILED Sbjct: 407 QRDPTEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|237736150|ref|ZP_04566631.1| cysteinyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] gi|229421703|gb|EEO36750.1| cysteinyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] Length = 472 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 190/481 (39%), Positives = 269/481 (55%), Gaps = 54/481 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK+ EF+ + + MYVCGPTVY++ HIGNARP I FD + R + G K Sbjct: 2 IKIYNTLTRKLEEFKPVKEGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYFEFR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV N TD+DDKII+RA +E S + +K + + +DT ++ +P Sbjct: 61 -VTYVSNFTDVDDKIIKRANEEGISC------EEVAAKYIKAYFEDTAKVNLKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI LI+++I GHAYE+ ++ FD S + Y S + +++ + G R+ Sbjct: 114 KATEHIGGMIKLIKSLIEKGHAYESQGDVYFDVESYKDEYLGLSHQNLEDLRSGARIEIS 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK++ EP W SPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 174 EIKKSPLDFALWKKAKEGEPSWNSPWGQGRPGWHIECSAMSHKYLGDTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C + A W+HNG++N+ G KMSKS GNF + ++LE + GR Sbjct: 234 PHHENEIAQSKCGCGGD-YARYWMHNGYINVNGEKMSKSLGNFFLLRDVLE--HYDGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIID------------ 348 V+RL +L +HYR+PIDF+ LT+A+ L + + +ID Sbjct: 289 ---VVRLFVLSSHYRKPIDFSDAELTQAKTSLERIENALMRGKEAVIDVKADGSSCMELK 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--------------LLPIFNA 387 ++A+ D NT + A+ +L +E K D + I N Sbjct: 346 EQLAVAKEKFIAAMDEDFNTSMGLGAIFELVKELNKAVDTPINAEGAEVVKETVEYIINV 405 Query: 388 SAHILGIEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 LG+++ E + N+ S IE +++ R K ++ +D IR +L G ++D K Sbjct: 406 MEEALGVKLKLETVVGNMTSELIEFILELRREARNEKNWAMSDKIRDRLAEMGIKIKDGK 465 Query: 447 N 447 + Sbjct: 466 D 466 >gi|288574958|ref|ZP_06393315.1| cysteinyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570699|gb|EFC92256.1| cysteinyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 469 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 257/487 (52%), Gaps = 56/487 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN L RK F + + Y CGPTVYD+ HIGNARP IVFDVL R + + V Sbjct: 5 LYNDLTRKKEPFVPLKDGEVGFYSCGPTVYDYFHIGNARPFIVFDVLRRYMEF--SGYRV 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+V+N TD+DDK+I RA + + + + K + +D L TH PRAT Sbjct: 63 TFVQNFTDVDDKMINRANE------MGITVQELAEKTIADYFEDADALGIKRATHYPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI ++I L++ + GHAYE + + FD SS P YG SR+ I+E + G+R+ K+ Sbjct: 117 EHIEEIIDLVKRLEESGHAYEVDGVVYFDVSSFPEYGKLSRQNIEELQSGSRIEVNSSKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF+LWK P EP W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHE Sbjct: 177 NPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSAMAMKYLGNTLDIHSGGTDLTFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQ+ A E W+HN ++ ++ KMSKS GNF+T E R +P+ Sbjct: 237 NEIAQAEAATE-EVFVRYWLHNEYILIDKEKMSKSLGNFMTARE--------ARKHYSPL 287 Query: 307 -IRLAMLMTHYREPIDFTVQRLTEAEILLSK----W----------PQTSTSKGIIDP-- 349 IR+ ML HYR P++F + L +A L + W P + I++ Sbjct: 288 AIRMFMLSAHYRSPVNFGPEGLQQATAALERLHNCWSDFRYAADNRPHSQGQDDIVESIK 347 Query: 350 ----AVLSALYNDLNTVSAIQAL---------HKLARESTKNHDLLPI---FNASAHILG 393 ++A+ +D NT AI + H +S + + I F I+G Sbjct: 348 RHRDDFVAAMDDDFNTAGAIGHIFEAVSTVNGHLKGNDSLSSEGIKAIEDFFRDVDSIMG 407 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + S IE L+++R K F+++D IR QL +KG ILED + Sbjct: 408 LIGLDSDGQDDDSEEIESLIRKREEARSAKDFATSDAIRDQLAAKGVILEDTP------Q 461 Query: 454 MTRWKQK 460 T+WK+K Sbjct: 462 GTKWKKK 468 >gi|319409608|emb|CBY89907.1| cysteinyl-tRNA synthetase (cysteine-tRNA ligase; CysRS) [Neisseria meningitidis WUE 2594] Length = 699 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 259/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEP 338 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 398 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458 Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 459 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPA 571 Query: 348 DPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 DP A+ +D +TV A+ L +LA E K +D L A I+G Sbjct: 572 DPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGL 631 Query: 394 -----IEVCK-EHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S I+ L+ R K ++ +D IR L ILED Sbjct: 632 LQRDPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILED 689 >gi|225077094|ref|ZP_03720293.1| hypothetical protein NEIFLAOT_02147 [Neisseria flavescens NRL30031/H210] gi|224951651|gb|EEG32860.1| hypothetical protein NEIFLAOT_02147 [Neisseria flavescens NRL30031/H210] Length = 473 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 259/482 (53%), Gaps = 66/482 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKESFSPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----ST 342 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAT 345 Query: 343 SKGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 + + + A +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 346 AFELSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 405 Query: 395 ------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 V N+ I I + Q R K ++ +D IR L IL Sbjct: 406 LQRDPTEFLQGGAVSDGLSNEEIDDLIARRKQAR----ADKNWAESDRIRDLLNEHKIIL 461 Query: 443 ED 444 ED Sbjct: 462 ED 463 >gi|125564667|gb|EAZ10047.1| hypothetical protein OsI_32351 [Oryza sativa Indica Group] Length = 569 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 195/511 (38%), Positives = 275/511 (53%), Gaps = 80/511 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++ +YNT R+ FQ P + MYVCG T YD +HIG+AR + FDVLYR LRY Sbjct: 70 RELHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYL- 128 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 129 -DHKVRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRYSDDFLSDMANLHCLPPSV 181 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI Q+I +I+ II + AY ++ F + P YG S RK+D+ + G RV Sbjct: 182 EPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKLDDNRAGERVAV 241 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DLI Sbjct: 242 DERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLI 301 Query: 242 FPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS CC + + N WIHNGF+N+ +KMSKS GNF+TI ++ E Sbjct: 302 FPHHENEIAQSRAACC----DSSINYWIHNGFVNVNSQKMSKSLGNFVTIRKVTEL---- 353 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 + +R+ +L THYR PI++T+++L A L QT Sbjct: 354 ---YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQHQSKAGDP 410 Query: 341 ---STSKGI--IDPAVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFN 386 +T+ I + +++ +DL+T A+ A+ + R+ K L + Sbjct: 411 LPVNTTNCIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQEKRLESLS 470 Query: 387 A----------------SAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFSS 427 A S++ ++ +E + S+ E+++Q ER K K++ Sbjct: 471 AMEEKIRMVLSVLGLLPSSYYEALQQLREKALRRASMTEEQVLQKIEERTSARKAKQYEK 530 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +D IRK+L + G L D PD T W+ Sbjct: 531 SDEIRKELAAVGIALMD--GPDG----TTWR 555 >gi|115480611|ref|NP_001063899.1| Os09g0556500 [Oryza sativa Japonica Group] gi|113632132|dbj|BAF25813.1| Os09g0556500 [Oryza sativa Japonica Group] gi|125606594|gb|EAZ45630.1| hypothetical protein OsJ_30298 [Oryza sativa Japonica Group] Length = 569 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 195/511 (38%), Positives = 275/511 (53%), Gaps = 80/511 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++ +YNT R+ FQ P + MYVCG T YD +HIG+AR + FDVLYR LRY Sbjct: 70 RELHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYL- 128 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 129 -DHKVRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRYSDDFLSDMANLHCLPPSV 181 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI Q+I +I+ II + AY ++ F + P YG S RK+D+ + G RV Sbjct: 182 EPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKLDDNRAGERVAV 241 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DLI Sbjct: 242 DERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLI 301 Query: 242 FPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS CC + + N WIHNGF+N+ +KMSKS GNF+TI ++ E Sbjct: 302 FPHHENEIAQSRAACC----DSSINYWIHNGFVNVNSQKMSKSLGNFVTIRKVTEL---- 353 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 + +R+ +L THYR PI++T+++L A L QT Sbjct: 354 ---YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQHQSKAGDP 410 Query: 341 ---STSKGI--IDPAVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFN 386 +T+ I + +++ +DL+T A+ A+ + R+ K L + Sbjct: 411 LPVNTTNCIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQEKRLESLS 470 Query: 387 A----------------SAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFSS 427 A S++ ++ +E + S+ E+++Q ER K K++ Sbjct: 471 AMEEKIRMVLSVLGLLPSSYYEALQQLREKALRRASMTEEQVLQKIEERTSARKAKQYEK 530 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +D IRK+L + G L D PD T W+ Sbjct: 531 SDEIRKELAAVGIALMD--GPDG----TTWR 555 >gi|307544947|ref|YP_003897426.1| cysteinyl-tRNA synthetase [Halomonas elongata DSM 2581] gi|307216971|emb|CBV42241.1| cysteinyl-tRNA synthetase [Halomonas elongata DSM 2581] Length = 467 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 182/471 (38%), Positives = 260/471 (55%), Gaps = 45/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ F IDP +RMYVCG TVYD+ H+G+AR M+ FDV+ R LR + Sbjct: 1 MQIYNTLTRRKETFTPIDPGRVRMYVCGMTVYDYCHLGHARVMVAFDVITRYLRARGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKI++RA + + I+ +T + +D RL L P +PR Sbjct: 60 -VTYVRNITDIDDKILKRAEEN------GETIASLTDRMIDAMHEDEGRLGVLRPDAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ +++ +IQ +I G+AY A+N ++ + +YG + R D+ + G RV + Sbjct: 113 ATQHVDEIVTMIQTLIDKGYAYAASNGDVYYRVRKFADYGKLNNRDPDDMRAGARVDVEE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P E W SPWG GRPGWHIECSAMS+ LG+ FDIHGGG DL FP Sbjct: 173 LKEDPLDFVLWKAAKPGEADWLSPWGPGRPGWHIECSAMSTCCLGETFDIHGGGPDLTFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ N W+H G + ++ KMSKS GNF TI E+LE Sbjct: 233 HHENEIAQSEAATG-KQYVNTWMHAGAVRVQHEKMSKSLGNFFTIREVLEHHD------- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA----V 351 V+R ++ +HYR PI++ L +A L ++ + + G +DP+ Sbjct: 285 PEVVRYLLVASHYRSPINYAPDSLADARKSLERFYNALDGVALEGVETPGEVDPSFDRRF 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH----DLLPIFNASAHILGIEVCKEHLNKNISI 407 + A+ +D NT AI L LARE + + P A LG + + + Sbjct: 345 IEAMDDDFNTAGAISVLFDLARELNRARKEAPEQAPALAAELKRLGGVLGLLQQEPAVFL 404 Query: 408 ------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 IE + ER + + F+ AD IR +L + G +L+D + Sbjct: 405 KGGAGELPLSEAEIEARISERAEAKQARDFARADAIRDELAALGIVLKDSR 455 >gi|238791509|ref|ZP_04635147.1| Cysteinyl-tRNA synthetase [Yersinia intermedia ATCC 29909] gi|238729125|gb|EEQ20641.1| Cysteinyl-tRNA synthetase [Yersinia intermedia ATCC 29909] Length = 461 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N++ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRALEN------NESCEQLTTRMLAEMHKDFDALNLKRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIALTERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWASPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A AL +ARE T + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSALFDIAREVNRLKTEDITAANGLAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTNDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|325661900|ref|ZP_08150521.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471878|gb|EGC75095.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA] Length = 468 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 194/476 (40%), Positives = 252/476 (52%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K EF ++ +RMYVCGPTVY+F HIGNARPMIVFD + R Y E Sbjct: 1 MKLYNTLTKKKEEFVPLEEKKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +EH S I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEEHVSA------EEISQRYIAECKKDMEGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I G+AYE N + F T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIEMIGQLIEKGYAYEKNGTVYFRTRKFGPYGKLSHKNLDDLRSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPFWKSPWSDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNRKMSKSLGNFRTVREIAE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRL-----------TEAEIL------LSKWPQTSTSK 344 + V+R ML HYR P++F+ + + T AE L T K Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMAASKNGLERIITAAENLKYLAANAKNGEMTDAEK 344 Query: 345 GIIDP------AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 I A A+ +D NT AI A+ +L + + D LL Sbjct: 345 AQIQETEKFVTAFEEAMEDDFNTADAIAAIFELVKFANTTADETSSQAYDSALLERIVHL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +LGI V KE + ++ IE L++ER K K F AD IR +L KG ILED Sbjct: 405 SDVLGIIVVKEE--ELLAEDIEALIEERQAARKAKNFQRADEIRNELLEKGIILED 458 >gi|258422624|ref|ZP_05685530.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9635] gi|257847196|gb|EEV71204.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9635] Length = 471 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 271/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 63 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMNDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEI 288 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQAYID 348 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 461 >gi|254492720|ref|ZP_05105891.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268595732|ref|ZP_06129899.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|268597919|ref|ZP_06132086.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae FA19] gi|268600306|ref|ZP_06134473.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268602538|ref|ZP_06136705.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268681087|ref|ZP_06147949.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268685567|ref|ZP_06152429.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291044895|ref|ZP_06570604.1| cysteinyl-tRNA synthetase CysS [Neisseria gonorrhoeae DGI2] gi|293397970|ref|ZP_06642176.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae F62] gi|226511760|gb|EEH61105.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268549121|gb|EEZ44539.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|268551707|gb|EEZ46726.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae FA19] gi|268584437|gb|EEZ49113.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268586669|gb|EEZ51345.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268621371|gb|EEZ53771.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268625851|gb|EEZ58251.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291011789|gb|EFE03785.1| cysteinyl-tRNA synthetase CysS [Neisseria gonorrhoeae DGI2] gi|291611916|gb|EFF40985.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae F62] Length = 476 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 191/484 (39%), Positives = 260/484 (53%), Gaps = 58/484 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 1 MMNMTAIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-- 58 Query: 61 YGEKC---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 +C +TYVRNITDIDDKII RA + + I + ++ Q +D L L Sbjct: 59 ---ECGYPLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVL 109 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P +P+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G Sbjct: 110 RPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAG 169 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 RV K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGG Sbjct: 170 ERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGG 229 Query: 237 GLDLIFPHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKS 281 G DL FPHHENEIAQS A I W+HNGF+ ++G KMSKS Sbjct: 230 GADLQFPHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKS 289 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT- 340 GNF TI E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 290 LGNFFTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTL 342 Query: 341 -STSKGIIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNAS 388 +T D + +A+ +D TV A+ L +LA E K +D L A Sbjct: 343 KNTPAAEFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKAL 402 Query: 389 AHILG------IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 I+G IE + ++ +S IE L+ R K ++ +D IR L Sbjct: 403 GGIIGLLQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKI 462 Query: 441 ILED 444 ILED Sbjct: 463 ILED 466 >gi|238790851|ref|ZP_04634606.1| Cysteinyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] gi|238721068|gb|EEQ12753.1| Cysteinyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] Length = 473 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 14 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 71 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +TS+ + KD L P +PR Sbjct: 72 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTSRMLAEMHKDFDALNLERPDLEPR 125 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 126 ATHHIPEIIELTERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 185 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 186 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 245 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 246 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 297 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 298 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 357 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 358 MDDDFNTPEAYSVLFDIAREVNRLKTEDIAAANGLAAELRKLAHVLGLLEQDPELFLQSG 417 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 418 AQTDDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 471 Query: 459 QK 460 +K Sbjct: 472 RK 473 >gi|238785350|ref|ZP_04629338.1| Cysteinyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] gi|238713741|gb|EEQ05765.1| Cysteinyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] Length = 461 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 264/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I ++ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENSETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L++ +I HAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELVERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGAGRPGWHIECSAMNSKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANAAPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDIAAANGLAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDGDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|238898628|ref|YP_002924309.1| cysteinyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259511836|sp|C4K6G8|SYC_HAMD5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229466387|gb|ACQ68161.1| cysteinyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 461 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/481 (38%), Positives = 262/481 (54%), Gaps = 54/481 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT RK F I P+ + MYVCG T+YD HIG+AR +VFDV+ R LRY Sbjct: 2 LKIFNTFNRKKELFTPIHPNTVGMYVCGVTIYDLCHIGHARTFVVFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA Q H S +T++ ++ +D L L P +PR Sbjct: 60 SLTYVRNITDIDDKIIQRASQNHQSC------EALTAQMLKEMYRDFDELNLLRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L Q ++ +AY AN +++F P+YG SR+ +++ + G RV Sbjct: 114 ATEHITEMITLTQQLLDQKYAYVAANGDVLFSVEKNPHYGLLSRQNLEQLQAGARVEVME 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK S P EP W SPWG GRPGWHIECSAM++ LG FDIHGGG DL+FP Sbjct: 174 SKHHPMDFVLWKMSKPNEPHWPSPWGEGRPGWHIECSAMNAKALGPHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA + N W+H+G + + KMSKS NF TI +LL+ + Sbjct: 234 HHENEMAQSICAHKA-PYVNCWMHSGMIMINKEKMSKSLNNFCTIRDLLQ-------RYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------WPQTSTSKGIIDPAV 351 +R +L HYR P+++T + L +A I L++ +P+ S + Sbjct: 286 PETLRYFLLSAHYRSPLNYTEENLKQARIALTRLYTALRDTNQKAFPEGGES---FEKRF 342 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK------------- 398 +SA+ +D NT A L ARE K P +A L ++ K Sbjct: 343 VSAMNDDFNTPEAYAVLFDTAREINKLKKEHP---KAADGLAAQLRKMGKVLGLLESGSL 399 Query: 399 ------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E +++ S I L+++R + K + AD R +L G ++ED +N N + Sbjct: 400 LSLLNPEKDDRHQSAEIADLIEKRNLARAHKNWEEADNARTRLFEMGVVVEDTENGTNWR 459 Query: 453 R 453 R Sbjct: 460 R 460 >gi|225024891|ref|ZP_03714083.1| hypothetical protein EIKCOROL_01779 [Eikenella corrodens ATCC 23834] gi|224942349|gb|EEG23558.1| hypothetical protein EIKCOROL_01779 [Eikenella corrodens ATCC 23834] Length = 473 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 189/493 (38%), Positives = 264/493 (53%), Gaps = 64/493 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDVEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIEALIRNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSDKLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHVCGHEHAHTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I ++L + + ++R +L HYR P++++ L +A+ L++ T + + Sbjct: 293 IRDVL-------KQYDPEIVRFFILRAHYRSPLNYSDAHLDDAKNALTRLYNTLANVPPV 345 Query: 348 DPAVLS-----------ALYNDLNTVSAIQALHKLARES--TKNHDLLPIFNASAHILGI 394 + V S A+ +D +TV A+ L +LA E+ T++ +L A A +G+ Sbjct: 346 EFQVASEANDYTRRFFAAMNDDFDTVQAVAVLFELAGEANKTQSAELSGCLKALAGTIGL 405 Query: 395 ------EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 E + N + IE L+ R K ++ +D IR L +G L D Sbjct: 406 LQRNPTEFLQGGATANGLSNEEIEALIARRKQARADKNWAESDRIRDLLAEQGITLRD-- 463 Query: 447 NPDNGQRMTRWKQ 459 G T W + Sbjct: 464 ----GADGTSWTR 472 >gi|296131811|ref|YP_003639058.1| cysteinyl-tRNA synthetase [Thermincola sp. JR] gi|296030389|gb|ADG81157.1| cysteinyl-tRNA synthetase [Thermincola potens JR] Length = 487 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 189/511 (36%), Positives = 267/511 (52%), Gaps = 81/511 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT RK EF P + MYVCGPT Y+ H+GNARP+IVFD + R Y + Sbjct: 3 IKLYNTCTRKKEEFIPRQPGKVDMYVCGPTTYNLIHLGNARPLIVFDTVRRYFEYKGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDIDDKII RAR+E+ PI + +K +++ KD L T PR Sbjct: 62 -VTYVQNFTDIDDKIINRAREENTD-PIT-----LAAKYIREYFKDAAALGVREATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+ ++I +I+ I+ +G+AY+ + ++ F S YG S R +++ + G RV Sbjct: 115 VSEHLDEIIEMIRGIMKNGYAYQLDGDVYFSVESFKGYGKLSGRSLEDMQAGARVDVDTR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM++ YLG FDIHGGG DLIFPH Sbjct: 175 KRHPMDFALWKAAKPGEPAWDSPWGKGRPGWHIECSAMANKYLGMGFDIHGGGFDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A W+HNGF+ + KMSKS GNF T+ E+L + Sbjct: 235 HENEIAQAEAYAGCGPFARYWMHNGFITVNEEKMSKSLGNFFTVREILA-------KYDP 287 Query: 305 PVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA 354 V+R ML THYR P+DF ++ RL A + +T+ + +P + A Sbjct: 288 EVVRFYMLSTHYRSPLDFDDTKLEMNRKSLSRLHNALDNIESILKTNKFGEVENPELEKA 347 Query: 355 LY------------------NDLNTVSAIQALHKLARESTKN------------------ 378 L +D NT AI L LAR+S Sbjct: 348 LADLLRAREKAVRDFEEAMDDDFNTALAIAVLFDLARDSNAFIHAATSAGGDALLQEVKG 407 Query: 379 --HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM-------KKFSSAD 429 + F +LG+ ++ + + +++L+Q I+L + K +++AD Sbjct: 408 ALQQVFDTFMKLGQVLGL--FEKRGTQGDTGLVDRLMQ---IILDIRSEARARKDWATAD 462 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR +L G I+ED +P RWK+K Sbjct: 463 GIRNKLNELGIIIED--SPQG----ARWKRK 487 >gi|300114660|ref|YP_003761235.1| cysteinyl-tRNA synthetase [Nitrosococcus watsonii C-113] gi|299540597|gb|ADJ28914.1| cysteinyl-tRNA synthetase [Nitrosococcus watsonii C-113] Length = 495 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 192/500 (38%), Positives = 271/500 (54%), Gaps = 76/500 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L RK EF I+ +RMYVCG TVYD H+G+AR M+VFDV+ R LR E Sbjct: 2 LRIYNSLTRKKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDVVARYLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA ++ ++I +T++ Q +D L L P +PR Sbjct: 61 -VMYVRNITDIDDKIIHRANEK------GESIHALTARYIQALHEDEASLQILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++ +++ ++ G+AY+ N +I +D S YG+ S + +++ + G RV Sbjct: 114 ATESMEAILAMVRQLLEQGYAYQGENGDIYYDVSHFEGYGALSGKHLEDLRAGERVQVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP WESPWG GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKPDEPAWESPWGPGRPGWHIECSAMSIQELGVHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A K N W+HNGF+ L+ KMSKS GNF T+ E+LE + Sbjct: 234 HHENEIAQSEAATG-SKFVNYWMHNGFVRLDDEKMSKSLGNFFTVREVLE-------HYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGII------ 347 V+R +L +HYR P++++ Q+L A+ +++ ++++G+ Sbjct: 286 PEVLRYFILSSHYRSPLNYSKQQLDTAKAAMTRLYTALRGIPRGDDRASAQGLSWEFVDG 345 Query: 348 -DPAVL---SALYNDLNTVSAIQAL----HKLAR-----ESTKNHDLLPIFNASAHILGI 394 DP +L A+ +D NT A+ L H L R ++ K L + A ILG+ Sbjct: 346 EDPFILRFREAMDDDFNTPEALALLNEVRHALNRARKGGDTEKGQSLAVLLRALGGILGL 405 Query: 395 --------------EVCKEHLNKNISIA----------------IEKLVQERLILLKMKK 424 V K S++ IE+LV +R + K K Sbjct: 406 LAHEPEQFLRDPRQMVVVSDTAKTTSLSLTSQTSTEKVVLSHDGIEQLVAQRTVARKNKD 465 Query: 425 FSSADYIRKQLESKGFILED 444 ++ AD IR L+ +G LED Sbjct: 466 WAEADRIRGILKDQGITLED 485 >gi|160881448|ref|YP_001560416.1| cysteinyl-tRNA synthetase [Clostridium phytofermentans ISDg] gi|187629805|sp|A9KSM5|SYC_CLOPH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160430114|gb|ABX43677.1| cysteinyl-tRNA synthetase [Clostridium phytofermentans ISDg] Length = 470 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 182/479 (37%), Positives = 254/479 (53%), Gaps = 58/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL + EF + + MYVCGPTVY++ HIGNARP++VFD + R L Y + Sbjct: 1 MKIYNTLTKAKEEFIPLQEGKVSMYVCGPTVYNYIHIGNARPVVVFDTVRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E S I+ + ++++KDT L L T +P+ Sbjct: 60 -VNFVSNFTDVDDKIIKKANEEGVSA------HEISERYIKEYLKDTEALNVLPVTTRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI +I+ +I GHAYE N + F T S YG S++ ID+ + G R+ Sbjct: 113 ATEEIDGMIDMIEELIEKGHAYEKNGTVYFKTRSFKQYGKLSKKNIDDLEAGARIAVADE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF+LWK EP W +PW GRPGWHIECS MS YLG DIH GG DLIFPH Sbjct: 173 KDDPMDFVLWKPKKVGEPAWSAPWCDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLIFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQ+ CC + + A W+HNGFLN++ +KMSKS GNF T+ E+ + Sbjct: 233 HENEIAQTECCTGK--EFAKYWMHNGFLNVDNKKMSKSEGNFFTVREIF-------AEYA 283 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVL- 352 V+R +L +YR PI+F+ ++R+ A L + KG + + Sbjct: 284 PAVLRFFLLSVNYRSPINFSRDIIESSKNGLERIQTAVEQLHFLAKVKAEKGELSTELTE 343 Query: 353 -----------------SALYNDLNTVSAIQALHKLARESTKN----------HDLLPIF 385 A+ +D NT AI ++ ++ + S +L Sbjct: 344 SESTLLKEFDALIKKFEDAMDDDFNTADAISSIFEMVKLSNTYVTVESSVEMIQKVLSNI 403 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ILG+E E + + IE+L+ +R K K F+ +D IR L KG ILED Sbjct: 404 TTFCDILGLET--EKKAEILDEEIEQLIADRQSARKAKDFAKSDEIRNLLLEKGIILED 460 >gi|50084652|ref|YP_046162.1| cysteinyl-tRNA synthetase [Acinetobacter sp. ADP1] gi|61216194|sp|Q6FC71|SYC_ACIAD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49530628|emb|CAG68340.1| cysteinyl-tRNA synthetase [Acinetobacter sp. ADP1] Length = 473 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 189/474 (39%), Positives = 265/474 (55%), Gaps = 53/474 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF P +I MYVCG TVYD+ HIG+AR M+ FD + R LR + V Sbjct: 6 LYNSEQRKKVEFVPRKPGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWD--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + N+ I +TS+ +D +L C P P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------NETIQQLTSRFIDAMNEDAAKLGCAEPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I +M +I ++ G AY A+N ++ F+ S YG S RK+++ + G RV + Sbjct: 118 EYIGEMQNMISTLVDKGSAYPASNGDVYFEVSKFEKYGRLSGRKLEDMQAGASERVDIEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 178 EKKHPFDFVLWKGAKPNEPSWVSPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLTFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTSKGIIDP 349 VIR ++ +HYR P++F+ L EA+ L+++ T + I+ Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALTRFYHAFKAYEQVYGQNDSTQKDEQFIER 349 Query: 350 AVLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI------ 394 + A+ +D NT AI L +L RE + + I+ + ILG+ Sbjct: 350 FNI-AMRDDFNTPEAIAVLFELNRELNRAVKEQQAEQAAIYYVTLRHLTQILGLVQHDVD 408 Query: 395 EVCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E K + + + I+ ++Q+R K K FS AD IR+ L +G +LED Sbjct: 409 EFLKSDIGQEVLSLSDDEIQAMIQQRADAKKAKDFSGADAIRQALLDQGVVLED 462 >gi|192361138|ref|YP_001982161.1| cysteinyl-tRNA synthetase [Cellvibrio japonicus Ueda107] gi|190687303|gb|ACE84981.1| cysteinyl-tRNA synthetase [Cellvibrio japonicus Ueda107] Length = 466 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 188/485 (38%), Positives = 270/485 (55%), Gaps = 50/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ + P I MYVCG TVYD+ HIG+AR ++ FDV+ + LR + Sbjct: 3 LQIYNTLSRQKEEFKPLKPGKISMYVCGITVYDYCHIGHARVLVAFDVITKFLRSQGWD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + + +T + +D RL P +PR Sbjct: 62 -VTYVRNITDIDDKIIKRANEN------GEQYTDLTKRFIDYMHEDEARLGIARPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I Q+I + Q +I G+AY A+N ++ + + +YG + + +DE +G R+ Sbjct: 115 ATAFIDQIINMNQALIDKGYAYPASNGDVYYRVTRFADYGKLTNKNVDELLVGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP W+SPWG+GRPGWHIECSAMS G FDIHGGG DL FP Sbjct: 175 IKEDPRDFVLWKAAKAGEPAWKSPWGQGRPGWHIECSAMSKDCCGTTFDIHGGGPDLPFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ K N W+H G + ++G KMSKS GNF TI ++LE + Sbjct: 235 HHENEIAQSEAANGC-KYVNYWMHAGAVRVDGEKMSKSLGNFFTIRDVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------PQTSTSKGIIDPA 350 V+R ++ +HYR PI++ L EA L ++ P T + Sbjct: 287 PEVVRFLLVSSHYRSPINYAEDNLVEARTGLERFYGALRDYADVESLPLTELQASDYYRS 346 Query: 351 VLSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI--EVCKEH 400 ++A+ +D NT A+ +++ L RE + L A ILGI E + Sbjct: 347 FVAAMNDDFNTRVALASMYDLVRELNNAGKTDVERAQRLAGELKALGLILGILQENPRVF 406 Query: 401 LNKNIS--IA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 L S IA +++LV ER+ K K ++ AD +RKQL G ++ED K+ T Sbjct: 407 LQTGTSGQIAAEEVDRLVAERIQAKKEKNYARADEVRKQLADNGILIEDAKDG-----TT 461 Query: 456 RWKQK 460 +W+++ Sbjct: 462 QWRRE 466 >gi|268600169|ref|ZP_06134336.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268685235|ref|ZP_06152097.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] gi|268584300|gb|EEZ48976.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268625519|gb|EEZ57919.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] Length = 476 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 191/484 (39%), Positives = 260/484 (53%), Gaps = 58/484 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 1 MMNMTAIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-- 58 Query: 61 YGEKC---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 +C +TYVRNITDIDDKII RA + + I + ++ Q +D L L Sbjct: 59 ---ECGYPLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVL 109 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P +P+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G Sbjct: 110 RPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAG 169 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 RV K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGG Sbjct: 170 ERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGG 229 Query: 237 GLDLIFPHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKS 281 G DL FPHHENEIAQS A I W+HNGF+ ++G KMSKS Sbjct: 230 GADLQFPHHENEIAQSVGASGHTCGHDHAQTHHGRSIASHVKYWLHNGFIRVDGEKMSKS 289 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT- 340 GNF TI E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 290 LGNFFTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTL 342 Query: 341 -STSKGIIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNAS 388 +T D + +A+ +D TV A+ L +LA E K +D L A Sbjct: 343 KNTPAAEFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKAL 402 Query: 389 AHILG------IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 I+G IE + ++ +S IE L+ R K ++ +D IR L Sbjct: 403 GGIIGLLQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKI 462 Query: 441 ILED 444 ILED Sbjct: 463 ILED 466 >gi|261379506|ref|ZP_05984079.1| cysteine--tRNA ligase [Neisseria subflava NJ9703] gi|284797969|gb|EFC53316.1| cysteine--tRNA ligase [Neisseria subflava NJ9703] Length = 473 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 191/478 (39%), Positives = 260/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFTPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKVGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 346 EFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 405 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|330959375|gb|EGH59635.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 460 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 180/478 (37%), Positives = 261/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSAAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ R+ + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVRDINRLRESDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|328951998|ref|YP_004369332.1| cysteinyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] gi|328452322|gb|AEB08151.1| cysteinyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] Length = 490 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 195/495 (39%), Positives = 254/495 (51%), Gaps = 71/495 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F + P +++Y CG TVYD HIG+AR +VFDV+ R LR+ G K Sbjct: 1 MQVYNTLSRRKEAFIPLKPGIVQIYACGVTVYDDCHIGHARSAVVFDVIVRYLRFL-GNK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V++VRN TDIDDKII+RA +EH S + F +D L +P+ Sbjct: 60 -VSWVRNFTDIDDKIIQRAEREHTSW------KTVAETYIASFQRDMAALGVAPADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI ++I IQ + G AY+ N ++ F + P YG S R +D+ G RV Sbjct: 113 ATDHIDEIIGFIQVLEDQGLAYQRNGDVYFPVAKFPGYGKLSGRSLDDMLAGARVDVNIQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK S P EP W+SPWG GRPGWHIECSAMS HYLG+ FDIHGGG DLIFPH Sbjct: 173 KDNPFDFALWKASKPGEPAWDSPWGPGRPGWHIECSAMSRHYLGETFDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG + + KMSKS GNF TI E+L KF Sbjct: 233 HENEIAQSEAAHG-KPLARYWLHNGMVTVNQEKMSKSLGNFFTIREVL--AKFH-----P 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVLS------ 353 V+R ++ HYR P+DF+ Q L EAE L + T T+ I P +S Sbjct: 285 EVVRFFLIQNHYRSPLDFSDQALAEAENALERLYSTLARLDQTTGPIAAPEAISGAFSLS 344 Query: 354 -------------------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG- 393 A+ +D NT A+ L R + + P NA L Sbjct: 345 GLDSEEQSRLLTIRSRFLEAMDDDFNTAQALGVLFDAVRLLNRIVEHNPSGNADMSALAW 404 Query: 394 ----IEVCKEHLN-----------------KNISI---AIEKLVQERLILLKMKKFSSAD 429 + V LN ++I IE+L+ R K + F+ AD Sbjct: 405 TRRELTVLGGILNLLQQDPQTMLQNLRQKTDALTIPPSEIERLIAARAEARKQRDFTKAD 464 Query: 430 YIRKQLESKGFILED 444 IR+QL G +LED Sbjct: 465 AIRQQLAEAGVLLED 479 >gi|317500158|ref|ZP_07958391.1| cysteine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087615|ref|ZP_08336543.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA] gi|316898447|gb|EFV20485.1| cysteine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330399794|gb|EGG79454.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA] Length = 468 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 188/491 (38%), Positives = 263/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF ++ ++MYVCGPTVY+F HIGNARPMI FD + R Y E Sbjct: 1 MKIYNTLSKRKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIAFDTVRRYFEYKGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E S I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEEGVSA------DEISKRYIAECKKDMEAMNVKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEICGMVEMISTLIEKGYAYEKNGTVYYRTRKFEGYGKLSHKNLDDLRSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFLN++ +KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNKKMSKSLGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-----------------SKWPQTSTSK 344 + ++R ML HYR P++F+ + + A+ L S+ T + K Sbjct: 285 YDLQILRFFMLSAHYRSPLNFSAELMEAAKNSLERILTAADNLKFLISNTSEEKMTESEK 344 Query: 345 GIID------PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 + + A A+ +D NT AI A+ L + S+K + +LL Sbjct: 345 RLFEKSSEYVEAFERAMDDDFNTADAIAAIFDLVKYMNTTADGASSKEYLQNLLDRLCLL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE + + IE+++++R K + F+ AD IR +L +KG ILED + Sbjct: 405 TDVLGIIVIKEE--EMLDSEIEEMIEKRQAARKDRNFALADQIRDELLAKGIILEDTREG 462 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 463 ------VKWKK 467 >gi|194366504|ref|YP_002029114.1| cysteinyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3] gi|194349308|gb|ACF52431.1| cysteinyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3] Length = 458 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 184/479 (38%), Positives = 259/479 (54%), Gaps = 48/479 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N L R++ F +DP+ +YVCGPTVY++ HIGNAR +VF VL LLR +G Sbjct: 3 LRLHNNLTRQLEPFTPLDPACPTLYVCGPTVYNYVHIGNARGPVVFGVLADLLRRRFG-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y RNITD+DDKI AR++ +PI S IT + + +D L P +P Sbjct: 61 GLRYARNITDVDDKINNAAREQ--GVPI----STITDRFAAAYREDMAALGVAPPDIEPE 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIPQ+I +I +I GHAY A ++F SS YG SRR +E G RV + Sbjct: 115 VTAHIPQIITMIGQLIASGHAYPAEGHVLFAVSSFEGYGKLSRRDPEEMLAGARVDVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG+ DIH GG+DL FPH Sbjct: 175 KRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS CA A W+HNG LN G KMSKS GN +++L+ R P Sbjct: 235 HENELAQSECAHGGRIFARFWLHNGMLNFGGAKMSKSVGNIERVHDLV-------RQHPP 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVLSA-LYND 358 +RLA+L HYR+P++++ + ++ L + T S + PA + A L +D Sbjct: 288 EALRLALLSAHYRQPLEWSDALIEQSVRTLDRLYGTLRELASVVAVVAIPATVEATLDDD 347 Query: 359 LNTVSAIQALH----------------KLARESTKNHDLLPIFNAS-AHILGIEVCKEHL 401 LNT A+ + +L E L + A A G + Sbjct: 348 LNTPQALAEVARIAADARRATDPTEQARLKGELLGAGLALGLLQADPAQWFGTAAGDDGD 407 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I+ L+ R + + F+ +D IR QL ++G +LED + RW +K Sbjct: 408 DAR----IQGLIDARAAAKQARDFARSDAIRDQLAAEGIVLEDTP------QGVRWSRK 456 >gi|161508769|ref|YP_001574428.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|160367578|gb|ABX28549.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] Length = 476 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 271/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 10 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 67 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 68 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 122 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 181 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 182 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 241 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 242 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 293 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 294 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 353 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 354 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 413 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 414 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 466 >gi|153814444|ref|ZP_01967112.1| hypothetical protein RUMTOR_00656 [Ruminococcus torques ATCC 27756] gi|145848840|gb|EDK25758.1| hypothetical protein RUMTOR_00656 [Ruminococcus torques ATCC 27756] Length = 469 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 188/491 (38%), Positives = 263/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF ++ ++MYVCGPTVY+F HIGNARPMI FD + R Y E Sbjct: 2 MKIYNTLSKRKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIAFDTVRRYFEYKGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E S I+ + + KD + T P Sbjct: 61 -VNFVSNFTDVDDKIIKKAIEEGVSA------DEISKRYIAECKKDMEAMNVKPATKNPL 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 114 ATEEICGMVEMISTLIEKGYAYEKNGTVYYRTRKFEGYGKLSHKNLDDLRSGGRSLLVTG 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 174 EDEKEDPLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFLN++ +KMSKS GNF T+ E+ G Sbjct: 234 FPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNKKMSKSLGNFFTVREI-------GEK 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-----------------SKWPQTSTSK 344 + ++R ML HYR P++F+ + + A+ L S+ T + K Sbjct: 286 YDLQILRFFMLSAHYRSPLNFSAELMEAAKNSLERILTAADNLKFLISNTSEEKMTESEK 345 Query: 345 GIID------PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 + + A A+ +D NT AI A+ L + S+K + +LL Sbjct: 346 RLFEKSSEYVEAFERAMDDDFNTADAIAAIFDLVKYMNTTADGASSKEYLQNLLDRLCLL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE + + IE+++++R K + F+ AD IR +L +KG ILED + Sbjct: 406 TDVLGIIVIKEE--EMLDSEIEEMIEKRQAARKDRNFALADQIRDELLAKGIILEDTREG 463 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 464 ------VKWKK 468 >gi|254448716|ref|ZP_05062174.1| cysteinyl-tRNA synthetase [gamma proteobacterium HTCC5015] gi|198261724|gb|EDY86011.1| cysteinyl-tRNA synthetase [gamma proteobacterium HTCC5015] Length = 463 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/484 (39%), Positives = 264/484 (54%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ I P +R+YVCG T YD+ HIG+AR M+ FD + R LR+ + Sbjct: 1 MQIYNTLSRSKQVFEPIHPGQVRLYVCGITTYDYCHIGHARVMVAFDAITRYLRHRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKI++RA + +A +T++ +D L L P +PR Sbjct: 60 -VTYVRNITDIDDKILKRAEEN------GEAYDTLTARFIDAMHEDERALGVLPPDREPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ +I G AY A N ++ F S +YG S +K+++ G RV + Sbjct: 113 ATQHIQDIIDLIQVLIDKGAAYTAENGDVYFSVSDFADYGKLSNKKLEDLLEGVRVELES 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + + GWE+PWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 173 SKRDPRDFALWKGAQQDQVGWEAPWGYGRPGWHIECSAMSTSCLGNHFDIHGGGPDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E AN+W+H G + ++ KMSKS GNF TI E+LE + Sbjct: 233 HHENEIAQSEAATG-ETYANVWMHAGAVRVDNEKMSKSLGNFFTIREVLE-------KYQ 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----PQTSTSK---GIIDPAVLSA- 354 VIR +L +HYR PI+++ L +A L + P + + + D + L A Sbjct: 285 PEVIRYFLLSSHYRSPINYSDNSLEQARAGLERLYTALRPYSDVAADEAALSDSSALQAF 344 Query: 355 ---LYNDLNTVSAIQALHKLAR-----ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 + +D NT A+ L LAR E ++ +LG+ + +L Sbjct: 345 QQVMDDDFNTREALSVLFDLARQLNQQEGEAARNIAVQLKTLGRVLGLLEGDAQAYLKSG 404 Query: 405 ISIA---------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 ++ I+ L+ ER+ + K F+ AD IR QL G LED G T Sbjct: 405 GLVSDAGSLSDDDIDALIAERIEAKQNKDFARADDIRDQLTEAGIQLED------GPAGT 458 Query: 456 RWKQ 459 +W++ Sbjct: 459 QWRR 462 >gi|331085695|ref|ZP_08334778.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406618|gb|EGG86123.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 468 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 191/476 (40%), Positives = 253/476 (53%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K EF ++ +RMYVCGPTVY+F HIGNARPMIVFD + R Y E Sbjct: 1 MKLYNTLTKKKEEFVPLEEKKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +EH S I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEEHVSA------EEISQRYIAECKKDMEGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I G+AYE N + F T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIEMIGQLIEKGYAYEKNGTVYFRTRKFGPYGKLSHKNLDDLRSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPFWKSPWSDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNRKMSKSLGNFRTVREIAE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDP-- 349 + V+R ML HYR P++F+ ++R+ A L + + + D Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMAASKNGLERIITAAENLKYLAANAKNGEMTDAEK 344 Query: 350 -----------AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A A+ +D NT AI A+ +L + + D LL Sbjct: 345 VQIQETEKFVTAFEEAMEDDFNTADAIAAIFELVKFANTTADETSSQAYDSALLERIVHL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +LGI V KE + ++ IE L++ER K K F AD IR +L KG ILED Sbjct: 405 SDVLGIIVVKEE--ELLAEDIEALIEERQAARKAKNFQRADEIRNELLEKGIILED 458 >gi|260681821|ref|YP_003213106.1| cysteinyl-tRNA synthetase [Clostridium difficile CD196] gi|260685418|ref|YP_003216551.1| cysteinyl-tRNA synthetase [Clostridium difficile R20291] gi|260207984|emb|CBA60138.1| cysteinyl-tRNA synthetase [Clostridium difficile CD196] gi|260211434|emb|CBE01534.1| cysteinyl-tRNA synthetase [Clostridium difficile R20291] Length = 467 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 181/475 (38%), Positives = 262/475 (55%), Gaps = 55/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 3 VKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E S P + +K +++ D L T P+ Sbjct: 62 -VTYVQNFTDVDDKIINRSHEEGIS-P-----EEVAAKYIKEYFVDCDGLGIKRATVHPQ 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 115 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 175 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 235 HENEIAQS-EARSGKIFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYDL 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAV-------- 351 ++R ML HYR P++F+ + L +A+ L + T T +++ + Sbjct: 287 EIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVELV 346 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + A+ +D+NT A+ + +LA+ N D L FN + Sbjct: 347 KELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTGV 406 Query: 392 LGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L I K+ L+K+ IE+L+Q+R K K+F AD IR+QL G +LED Sbjct: 407 LNIVNKKKDTVLDKD----IEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLED 457 >gi|282915852|ref|ZP_06323617.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] gi|282320148|gb|EFB50493.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] Length = 471 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 271/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 63 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMEDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 461 >gi|258452738|ref|ZP_05700736.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5948] gi|282924443|ref|ZP_06332115.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9765] gi|257859611|gb|EEV82461.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5948] gi|282592854|gb|EFB97858.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9765] Length = 471 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 271/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 63 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 461 >gi|257092145|ref|YP_003165786.1| cysteinyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044669|gb|ACV33857.1| cysteinyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 457 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 193/486 (39%), Positives = 261/486 (53%), Gaps = 62/486 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R +F I P ++RMYVCG TVYD H+G+AR ++VFD++ R LR G + Sbjct: 2 LKIYNSLTRAKQDFVPITPGSVRMYVCGMTVYDHCHLGHARVLVVFDLVQRWLRAS-GLR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + SI +T++ D L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIKRALENKESI------GDLTNRFIAFMNDDAAALGVEKPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ LI + +G AY+ + ++ F P YG S + +D+ + G RV Sbjct: 114 ATEYVPQMLELIGRLEKNGLAYQVPDGDVNFSVRKFPGYGKLSGKALDDLRAGERVDVDG 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP W SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL FP Sbjct: 174 TKEDPLDFVLWKHAREGEPSWPSPWGDGRPGWHIECSAMSSVLLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + + N W+HNGF+ ++ KMSKS GNF TI E+L R + Sbjct: 234 HHENEIAQSEGAHQC-RFVNYWMHNGFVRVDDEKMSKSLGNFCTIKEIL-------RKYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 V+R +L HYR P++++ L +A LS+ T+ DP + Sbjct: 286 PEVLRFFILRAHYRSPLNYSDTHLDDARQALSRL-YTALRTANTDPPSIDWDEPHALRFR 344 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLL-------------------PIFNASAHILG 393 A+ +D NT A L LA E ++ +F +A G Sbjct: 345 DAMDDDFNTPEACAVLFDLAAELNRSKSATLAGQLRGLAGLLGLLGRDPQVFLQAAPSEG 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 E+ E IE L+ ER K +++AD IR L S G +LED G Sbjct: 405 GELTAEQ--------IESLISERAAAKAQKDYTAADRIRADLLSAGVVLED------GAS 450 Query: 454 MTRWKQ 459 TRW++ Sbjct: 451 GTRWRR 456 >gi|261364077|ref|ZP_05976960.1| cysteine--tRNA ligase [Neisseria mucosa ATCC 25996] gi|288568121|gb|EFC89681.1| cysteine--tRNA ligase [Neisseria mucosa ATCC 25996] Length = 473 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 192/493 (38%), Positives = 263/493 (53%), Gaps = 64/493 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFTPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394 D + +A+ +D TV A+ L +LA E K +D L I+G+ Sbjct: 346 AFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKVLGGIIGL 405 Query: 395 --EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 E L + I+ L+ +R K ++ +D IR L ILED Sbjct: 406 LQRDPTEFLQGGAVSDGLSNEEIDDLIAQRKQARADKNWAESDRIRNLLNEHKIILED-- 463 Query: 447 NPDNGQRMTRWKQ 459 N D T W++ Sbjct: 464 NADG----TTWRR 472 >gi|238795438|ref|ZP_04638953.1| Cysteinyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] gi|238720557|gb|EEQ12358.1| Cysteinyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] Length = 461 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I ++ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENSETCEQLTTRMLAEMHKDFDALNLQRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I + + +I HAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIEMTERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWQSPWGPGRPGWHIECSAMNSKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGI--IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + +T KG + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPKGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE T + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDITAANGLAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 --NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N +A IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDNDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|37527666|ref|NP_931010.1| cysteinyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii TTO1] gi|61216271|sp|Q7N0S5|SYC_PHOLL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|36787101|emb|CAE16176.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase) (CysRS) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 461 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 266/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHPGKVGMYVCGITIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + +++ +T + + KD L L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRAAEN------SESCDDLTGRMLAEMYKDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L +++I GHAY A+N +++F S +YG SR+ + + + G RV Sbjct: 114 ATRHIQEIIALTESLIKRGHAYVADNGDVMFSVESDQDYGLLSRQDLSQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGAGRPGWHIECSAMNSKQLGNHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R +L HYR +++T L +A L + + + + PA + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEDNLKQARTALERFYTALRGTDASVPPAGGEIFEARFIDA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI--EVCKEHLNKN 404 + +D NT A L + RE K+ D L A ILG+ + ++ L++ Sbjct: 346 MNDDFNTPEAYSVLFDMVREINRLKSEDMDAANGLAAELRKLAGILGLLQQQPEQFLHRG 405 Query: 405 IS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 I IE L+++R K K + AD R QL G LED G + T W+ Sbjct: 406 IQADDEEIAKIEALIKQRNDARKNKDWPLADSARNQLNEMGIELED------GPQGTSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|226944443|ref|YP_002799516.1| cysteinyl-tRNA synthetase [Azotobacter vinelandii DJ] gi|259511824|sp|C1DHE6|SYC_AZOVD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226719370|gb|ACO78541.1| cysteinyl-tRNA synthetase [Azotobacter vinelandii DJ] Length = 461 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 261/467 (55%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY+TL + F+ ++ + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR+ + Sbjct: 3 LSIYSTLSKGKEAFKPLEGNKVRMYVCGMTVYDFCHIGHARVMVAFDVVSRWLRHSGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + ++ + + +D RL L P +PR Sbjct: 62 -VTYVRNITDIDDKIIRRANEN------GESFQDLVGRMIAAMHEDEARLNVLRPDSEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +I+ +I +AY N ++ + YG SRRKI++ K+G R+ Sbjct: 115 ATDHIAGMHAMIRTLIDKSYAYAPGNGDVYYRVGKFEGYGKLSRRKIEDLKIGARIEPGE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 AKEDPLDFVLWKGAKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ ANIW+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KRYANIWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALY 356 V+R ++ +HYR PI+++ L EA L ++ P + G A +A Sbjct: 287 PEVVRYLLVSSHYRSPINYSEDSLREARAALERFYNALKGLPAAQPTGGDEYVARFNAAM 346 Query: 357 N-DLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLV 413 N D NT A L +LARE ++ DL + +A + + L ++ Sbjct: 347 NDDFNTPEACAVLFELAREVNRLRDTDLQSAASLAARLKELGGLLGVLQLEPEAFLQAGA 406 Query: 414 QERLILLKM-------------KKFSSADYIRKQLESKGFILEDYKN 447 +R+ ++ K ++ +D IR QL + G +LED KN Sbjct: 407 ADRVDAAEVEALIAARLAARAGKNWAESDRIRDQLAAMGVLLEDGKN 453 >gi|154502843|ref|ZP_02039903.1| hypothetical protein RUMGNA_00658 [Ruminococcus gnavus ATCC 29149] gi|153796726|gb|EDN79146.1| hypothetical protein RUMGNA_00658 [Ruminococcus gnavus ATCC 29149] Length = 468 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 187/476 (39%), Positives = 259/476 (54%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ + EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTMSKTKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + I+ + ++ KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKANEEGVTA------EEISKRYIEECKKDMEGMNVKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEIGGMIDMIQTLIDKGYAYEKNGTVYYRTRKFEGYGKLSHKNLDDLQSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ + + W+HNGFLN++ RKMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEAANG-KDFSKYWLHNGFLNIDNRKMSKSLGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------------ILLSKWPQTSTSK-- 344 + V+R ML HYR P++F+ + + A+ +L + T K Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKNGLERIVTAAEHLKFLLEGAKTENMTEKEQ 344 Query: 345 -GIIDPAVLS-----ALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 I+ + A+ +D NT AI A+ L + ES+K + +LL A Sbjct: 345 AKIVKSQEFTRKFEKAMDDDFNTADAIAAVFDLVKFINTNTDGESSKEYLQNLLSQLVAL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI V KE + ++ IE L+ ER K + F+ AD IR +L +KG ILED Sbjct: 405 TDVLGIIVEKEQ--EMLADDIEALIAERQAARKERNFARADEIRDELLAKGIILED 458 >gi|261378624|ref|ZP_05983197.1| cysteine--tRNA ligase [Neisseria cinerea ATCC 14685] gi|269144957|gb|EEZ71375.1| cysteine--tRNA ligase [Neisseria cinerea ATCC 14685] Length = 473 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/480 (39%), Positives = 260/480 (54%), Gaps = 58/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LNIYNTLTRQKEPFTPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----E 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C +TYVRNITDIDDKII RA + + I +T++ Q +D L L P Sbjct: 57 CGYPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDI 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 111 EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVE 170 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL Sbjct: 171 VDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADL 230 Query: 241 IFPHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 FPHHENEIAQS A I W+HNGF+ ++G KMSKS GNF Sbjct: 231 QFPHHENEIAQSVGASGHSCGHNHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNF 290 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STS 343 TI E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 291 FTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTP 343 Query: 344 KGIID---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHIL 392 D +A+ +D TV A+ L +LA E K +D L A I+ Sbjct: 344 AAKFDLFENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGII 403 Query: 393 G------IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G IE + ++ +S I+ L+ R K ++ +D IR L ILED Sbjct: 404 GLLQRDPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|332160825|ref|YP_004297402.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665055|gb|ADZ41699.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860142|emb|CBX70464.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica W22703] Length = 461 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLQRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY AN +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIARNHAYVAANGDVMFSVESDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDVNAAPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE T + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKAEDITAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADGDEVAKIEALIKQRNDARTSKDWALADSARDQLNELGIVLED------GPQGTVWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|283469822|emb|CAQ49033.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398] Length = 466 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|59802301|ref|YP_209013.1| hypothetical protein NGO1993 [Neisseria gonorrhoeae FA 1090] gi|239999926|ref|ZP_04719850.1| CysS [Neisseria gonorrhoeae 35/02] gi|240013127|ref|ZP_04720040.1| CysS [Neisseria gonorrhoeae DGI18] gi|240015570|ref|ZP_04722110.1| CysS [Neisseria gonorrhoeae FA6140] gi|240081823|ref|ZP_04726366.1| CysS [Neisseria gonorrhoeae FA19] gi|240114660|ref|ZP_04728722.1| CysS [Neisseria gonorrhoeae PID18] gi|240116861|ref|ZP_04730923.1| CysS [Neisseria gonorrhoeae PID1] gi|240120198|ref|ZP_04733160.1| CysS [Neisseria gonorrhoeae PID24-1] gi|240122495|ref|ZP_04735451.1| CysS [Neisseria gonorrhoeae PID332] gi|240127206|ref|ZP_04739867.1| CysS [Neisseria gonorrhoeae SK-93-1035] gi|260441533|ref|ZP_05795349.1| CysS [Neisseria gonorrhoeae DGI2] gi|81311142|sp|Q5F5D6|SYC_NEIG1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|59719196|gb|AAW90601.1| putative cysteinyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] Length = 473 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 259/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I + ++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 346 EFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 405 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|310766910|gb|ADP11860.1| Cysteinyl-tRNA synthetase [Erwinia sp. Ejp617] Length = 462 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 194/485 (40%), Positives = 265/485 (54%), Gaps = 53/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--YYG 62 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY Y+ Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYH- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + YVRNITDIDDKII+RA + ++I +T++ + +D L L P + Sbjct: 61 ---LKYVRNITDIDDKIIKRANEN------GESIERLTNRMIDEMHQDFAALNILPPDLE 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I L++ +I HAY A+N +++F S P YGS SR+ +D+ + G RV Sbjct: 112 PRATRHIAEIIELVEKLITREHAYVASNGDVMFSVDSDPQYGSLSRQDLDQLQAGARVEV 171 Query: 182 KYH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 172 AADVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDL 231 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L+ Sbjct: 232 MFPHHENEIAQSTCA-HDGPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLQ------- 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAV 351 + A +R ++ HYR +++ L +A I L +T G + Sbjct: 284 HYDAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTRATPAGGEEFEARF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI--EVCKEHL 401 A+ +D NT A AL LARE K D L +LG+ + ++ L Sbjct: 344 REAMDDDFNTPEAYSALFDLAREVNRMKGEDPAAADGLAARLRVLGGVLGLLEQDPEQFL 403 Query: 402 NKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 ++I IE L+Q R+ K K ++ AD R +L G +LED G T Sbjct: 404 QSGVNINDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGT 457 Query: 456 RWKQK 460 RW++K Sbjct: 458 RWRRK 462 >gi|240114101|ref|ZP_04728591.1| CysS [Neisseria gonorrhoeae MS11] gi|240126656|ref|ZP_04739542.1| CysS [Neisseria gonorrhoeae SK-92-679] Length = 473 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 259/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I + ++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGRSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 346 EFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 405 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|294788619|ref|ZP_06753861.1| cysteine--tRNA ligase [Simonsiella muelleri ATCC 29453] gi|294483496|gb|EFG31181.1| cysteine--tRNA ligase [Simonsiella muelleri ATCC 29453] Length = 475 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/468 (38%), Positives = 259/468 (55%), Gaps = 54/468 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ F+ IDP N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + + Sbjct: 4 LYNTLTRQKERFEPIDPKNVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQH--GYPL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA Q + I +T + Q +D+ L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARANQN------GETIQQLTERFIQAMNEDSQALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 HI QMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 EHIAQMIQMIEKLIENGKAYPAENGDVYYAVREFDAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + P EP W SPWG GRPGWHIECSAM G+ FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKPEEPSWASPWGNGRPGWHIECSAMGGELFGQTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQSC A+ +I+ W+HNGF+ ++ KMSKS GNF TI + Sbjct: 236 ENEIAQSCGANGGLCGHNKPVSGSLKKIDSHVKYWLHNGFIRVDNEKMSKSLGNFFTIRD 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + I+ Sbjct: 296 VL-------KKYQPEVVRFFILRAHYRSPLNYSDAHLDDAKNSLTRLYNTLNNVKPIEFK 348 Query: 351 V-------------LSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGI- 394 + +A+ +D T A+ L ++A E+ KN +L +LG+ Sbjct: 349 LDSNGNNNDYTHKFFNAMNDDFGTAEAVSVLFEIANEANKNDSAELSGCLKTLGGVLGLL 408 Query: 395 -EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ L ++ I KL+ +R I + K ++ +D IR L Sbjct: 409 QDNPEQFLQGGNNVDGLSADEINKLISQRKIARETKNWAESDRIRDIL 456 >gi|254555716|ref|YP_003062133.1| cysteine-tRNA ligase [Lactobacillus plantarum JDM1] gi|254044643|gb|ACT61436.1| cysteine-tRNA ligase [Lactobacillus plantarum JDM1] Length = 470 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 186/479 (38%), Positives = 262/479 (54%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T Sbjct: 57 CGYHVDYVSNFTDVDDKLIKRAAEDHTTVPA------VADRFIKAFMEDTTAVNIEPATV 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----T 177 PRA+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G T Sbjct: 111 HPRASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHT 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K++P DF LWK + P E WESPWG GRPGWHIECS MS+ YLG FDIHGGG Sbjct: 171 ADEETDRKEDPIDFALWKAAKPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 DL FPHHENEIAQS + KT AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 231 QDLEFPHHENEIAQSEA--KTGKTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKT 288 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGI 346 V+R M T YR PI +T L EA L K + Sbjct: 289 VD-------PQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNG 341 Query: 347 IDPAVLSAL--------------YNDLNTVSAIQALHKL-----ARESTKNHDLLPIFNA 387 D AV L +N N V+A+ L KL A+ + + L+ + A Sbjct: 342 TDTAVAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAKATVQKETLIALQKA 401 Query: 388 SAHILGI-EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + G+ V E N ++ AI+ L+ ER K K F+ AD IR L+++G ILED Sbjct: 402 LVQLTGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKAQGIILED 460 >gi|255021318|ref|ZP_05293366.1| Cysteinyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] gi|254969181|gb|EET26695.1| Cysteinyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] Length = 471 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 192/482 (39%), Positives = 262/482 (54%), Gaps = 53/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I I++++E + + P + +YVCG TVYDF H+G+AR M+ FD + R LR E Sbjct: 8 IHIHDSMEGRKLPLSLVQPGKVGIYVCGMTVYDFCHLGHARVMVTFDTVVRYLRARGLE- 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + + +T + +D L C+APT +PR Sbjct: 67 -VTYVRNITDIDDKIIRRAAER------GEGLDSLTQRFIDAMHEDEVALGCIAPTVEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ QM+ LI+ ++ GHAY N ++ + S P YG S R ++E G RV Sbjct: 120 ATQHVGQMLELIETLVRRGHAYAPGNGDVYYAVRSFPAYGRLSGRSLEELHSGARVEPGE 179 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWHIECSAMS LG FDIHGGG DL+FP Sbjct: 180 DKRDPLDFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMSQETLGCRFDIHGGGADLLFP 239 Query: 244 HHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 HHENEIAQS CA A W+HNGF+ ++ KMSKS GNF + +LL +GG Sbjct: 240 HHENEIAQSQGAGCA-----FAQHWMHNGFVRIDEEKMSKSLGNFRLVRDLLPI--YGGE 292 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGII------DPA 350 V+R +L +HYR P++F+ + L +A L++ + G I P Sbjct: 293 -----VLRFFILNSHYRSPLNFSEKLLEQARSGLTRLYTALRELPDDDGSILPEDSWGPR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH-------ILGI-EVCKEHLN 402 SA+ +D +T A+ L LARE + D F A A +LGI + E Sbjct: 348 FHSAMADDFHTPEALAVLFDLAREINRRRDAGEPFAALARRLRELGAVLGILQRRPEDFL 407 Query: 403 KNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + IE + R + + F+ AD +RK+LE G +LED G T W Sbjct: 408 RGDAAGIDVDWIEGRIAARAAARRERNFAEADRLRKELEECGILLED------GPGGTTW 461 Query: 458 KQ 459 +Q Sbjct: 462 RQ 463 >gi|194099737|ref|YP_002002872.1| CysS [Neisseria gonorrhoeae NCCP11945] gi|193935027|gb|ACF30851.1| CysS [Neisseria gonorrhoeae NCCP11945] gi|317165224|gb|ADV08765.1| hypothetical protein NGTW08_1810 [Neisseria gonorrhoeae TCDC-NG08107] Length = 475 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 259/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 6 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 60 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I + ++ Q +D L L P +P Sbjct: 61 YPLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 115 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 175 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 235 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 294 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 295 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 347 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 348 EFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 407 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S IE L+ R K ++ +D IR L ILED Sbjct: 408 LQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 465 >gi|88941991|sp|Q65UY1|SYC_MANSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 458 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 189/478 (39%), Positives = 268/478 (56%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLTREKEEFKPINPNKVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRALEN------NETCDQLVERMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVETLIRRGHAYVAEDGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNDKELGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA E N W+H G L + KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDGE-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDIL-------TKYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA-------VLSAL 355 A +R L YR +D++ + + A L + + + + PA +A+ Sbjct: 286 AESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCETVEIPAEDQYVIDFKTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI--EVCKEHLNKNI 405 +D NT A+ L +LARE TK + L A +LG+ + + L + Sbjct: 346 DDDFNTPGALAVLFELAREINKLKTEDQTKANQLASRLKQLAGVLGLLEQAPETFLQGDA 405 Query: 406 SIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + A IE L++ R K +++AD R +L + G +LED G + T W++ Sbjct: 406 ADAEVSKIEALIKRRNEARAAKDWAAADAARNELTAMGVVLED------GAKGTTWRK 457 >gi|300769737|ref|ZP_07079619.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492645|gb|EFK27831.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 506 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 186/479 (38%), Positives = 262/479 (54%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 38 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEY----- 92 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T Sbjct: 93 CGYHVDYVSNFTDVDDKLIKRAAEDHTTVPA------VADRFIKAFMEDTTAVNIEPATV 146 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----T 177 PRA+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G T Sbjct: 147 HPRASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHT 206 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K++P DF LWK + P E WESPWG GRPGWHIECS MS+ YLG FDIHGGG Sbjct: 207 ADEETDRKEDPIDFALWKAAKPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGGG 266 Query: 238 LDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 DL FPHHENEIAQS + KT AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 267 QDLEFPHHENEIAQSEA--KTGKTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKT 324 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGI 346 V+R M T YR PI +T L EA L K + Sbjct: 325 VD-------PQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNG 377 Query: 347 IDPAVLSAL--------------YNDLNTVSAIQALHKL-----ARESTKNHDLLPIFNA 387 D AV L +N N V+A+ L KL A+ + + L+ + A Sbjct: 378 TDTAVAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAKATVQKETLIALQEA 437 Query: 388 SAHILGI-EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + G+ V E N ++ AI+ L+ ER K K F+ AD IR L+++G ILED Sbjct: 438 LVQLTGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKAQGIILED 496 >gi|318604716|emb|CBY26214.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica Y11] Length = 461 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLQRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY AN +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIARNHAYVAANGDVMFSVESDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLVY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDVNAAPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE T + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKAEDITAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADGDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTVWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|197301390|ref|ZP_03166471.1| hypothetical protein RUMLAC_00121 [Ruminococcus lactaris ATCC 29176] gi|197299547|gb|EDY34066.1| hypothetical protein RUMLAC_00121 [Ruminococcus lactaris ATCC 29176] Length = 468 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 186/476 (39%), Positives = 262/476 (55%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTMSKRKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKNYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + I+ + ++ KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKANEEGVTA------EEISKRYIEECKKDMEGMNIQPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I+ +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEIGGMISMIETLIEKGYAYEKNGTVYYRTRKFAEYGKLSHKNLDDLQSGGRALLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP W+SPWG GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWKSPWGEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNRKMSKSLGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIIDPA---------- 350 + V+R ML HYR P++F+ + + A+ L + + + K +I+ A Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKNGLERITTAAENLKFLINNARTEDMSEDER 344 Query: 351 ------------VLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 A+ +D NT AI A+ +L + S+K + +L Sbjct: 345 KKLAGSIAYVENFEKAMDDDFNTADAISAVFELVKYMNTTTDGASSKEYLQNLFDCLIRL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI V KE ++ ++ IE L++ER K K F+ AD IR +L +KG IL+D Sbjct: 405 TDVLGIIVDKE--DEILASDIEALIEERQAARKAKNFARADEIRDELLAKGIILKD 458 >gi|257795372|ref|ZP_05644351.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9781] gi|258408941|ref|ZP_05681222.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9763] gi|258420421|ref|ZP_05683364.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9719] gi|258439342|ref|ZP_05690274.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299] gi|258444082|ref|ZP_05692419.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8115] gi|258446350|ref|ZP_05694508.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300] gi|258448443|ref|ZP_05696558.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6224] gi|258453799|ref|ZP_05701773.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5937] gi|282894964|ref|ZP_06303187.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8117] gi|282928866|ref|ZP_06336457.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A10102] gi|257789344|gb|EEV27684.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9781] gi|257840292|gb|EEV64755.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9763] gi|257843611|gb|EEV68017.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9719] gi|257847679|gb|EEV71678.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299] gi|257850752|gb|EEV74697.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8115] gi|257854944|gb|EEV77889.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300] gi|257858312|gb|EEV81199.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6224] gi|257864055|gb|EEV86809.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5937] gi|282589474|gb|EFB94563.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A10102] gi|282762646|gb|EFC02783.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8117] Length = 471 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 270/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 63 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 461 >gi|52424677|ref|YP_087814.1| cysteinyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E] gi|52306729|gb|AAU37229.1| CysS protein [Mannheimia succiniciproducens MBEL55E] Length = 476 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 189/478 (39%), Positives = 268/478 (56%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY + Sbjct: 20 LKIFNTLTREKEEFKPINPNKVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRYLGYD- 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 79 -LRYVRNITDVDDKIIKRALEN------NETCDQLVERMIAEMHKDFDALNILRPDVEPR 131 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 132 ATKHIPEIIAMVETLIRRGHAYVAEDGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 191 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 192 VKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNDKELGNHFDIHGGGSDLMFP 251 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA E N W+H G L + KMSKS NF TI ++L + Sbjct: 252 HHENEIAQSCCAHDGE-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDIL-------TKYD 303 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA-------VLSAL 355 A +R L YR +D++ + + A L + + + + PA +A+ Sbjct: 304 AESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCETVEIPAEDQYVIDFKTAM 363 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI--EVCKEHLNKNI 405 +D NT A+ L +LARE TK + L A +LG+ + + L + Sbjct: 364 DDDFNTPGALAVLFELAREINKLKTEDQTKANQLASRLKQLAGVLGLLEQAPETFLQGDA 423 Query: 406 SIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + A IE L++ R K +++AD R +L + G +LED G + T W++ Sbjct: 424 ADAEVSKIEALIKRRNEARAAKDWAAADAARNELTAMGVVLED------GAKGTTWRK 475 >gi|254973704|ref|ZP_05270176.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-66c26] gi|255091094|ref|ZP_05320572.1| cysteinyl-tRNA synthetase [Clostridium difficile CIP 107932] gi|255312749|ref|ZP_05354332.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-76w55] gi|255515509|ref|ZP_05383185.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-97b34] gi|255648602|ref|ZP_05395504.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-37x79] gi|306518726|ref|ZP_07405073.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-32g58] Length = 465 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 181/475 (38%), Positives = 262/475 (55%), Gaps = 55/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 1 MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E S P + +K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIINRSHEEGIS-P-----EEVAAKYIKEYFVDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 173 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQS-EARSGKIFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAV-------- 351 ++R ML HYR P++F+ + L +A+ L + T T +++ + Sbjct: 285 EIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVELV 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + A+ +D+NT A+ + +LA+ N D L FN + Sbjct: 345 KELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTGV 404 Query: 392 LGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L I K+ L+K+ IE+L+Q+R K K+F AD IR+QL G +LED Sbjct: 405 LNIVNKKKDTVLDKD----IEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLED 455 >gi|57634618|ref|NP_371054.2| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] Length = 476 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 270/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 10 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 67 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 68 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 122 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 181 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 182 EHKEDALDFTLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 241 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 242 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 293 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 294 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 353 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 354 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 413 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 414 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 466 >gi|283769685|ref|ZP_06342577.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] gi|283459832|gb|EFC06922.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] Length = 471 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 271/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + S+P I K F +D L T Sbjct: 63 GYNVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMEDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGILSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 461 >gi|160947200|ref|ZP_02094367.1| hypothetical protein PEPMIC_01133 [Parvimonas micra ATCC 33270] gi|158446334|gb|EDP23329.1| hypothetical protein PEPMIC_01133 [Parvimonas micra ATCC 33270] Length = 461 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 190/473 (40%), Positives = 265/473 (56%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK +F+ I +YVCGPTVY++ HIGN+RPMIV+D L R L Y + Sbjct: 1 MKIYNTLTRKKEDFKPIQAGKALIYVCGPTVYNYIHIGNSRPMIVYDTLRRYLLYIGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL-APTHQP 123 V +V N TDIDDKII RA++E+ +P D IT K +++D+ L + T P Sbjct: 60 -VKFVSNFTDIDDKIINRAKEEN--VPFTD----ITKKYIDAYLEDSYGLNLFESHTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATECINEMIEFVKVLEEKGIAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDISD 172 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK R EP WESPWG GRPGWH+ECS M+ YLG DIH GG DL F Sbjct: 173 EKKNPLDFALWKKRKDETEPAWESPWGMGRPGWHLECSVMAKKYLGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQS CC ++ AN W+HNG +N++ KMSKS GNF TI ++ + Sbjct: 233 PHHENEIAQSECCNGKV--FANYWMHNGMINIDNVKMSKSKGNFFTIKDI-------QKE 283 Query: 302 WPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSK--GIIDP 349 + VIRL +L THYR P++F+ + R+ + L + + K G I Sbjct: 284 YDLEVIRLWILSTHYRNPLNFSREVMEQTKNGLDRMYNGKEHLERLLEICEEKEDGDISK 343 Query: 350 AV------LSALYNDLNTVSAIQALHKLAREST---KNHDL------LPIFNASAHILGI 394 V L + +DLNT AI +++L R + +N DL + + + A +LG+ Sbjct: 344 LVELKKEFLDCMDDDLNTADAISKVYELIRYTNTFGENTDLKVVKGAVKLLSDFASVLGL 403 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +E + N+ +EKL++ER K K F AD IR L+ L+D +N Sbjct: 404 LYKEE--DDNLDEKVEKLIKEREEARKNKDFKRADEIRDALKEMNIELKDTRN 454 >gi|212637933|ref|YP_002314453.1| cysteinyl-tRNA synthetase [Anoxybacillus flavithermus WK1] gi|226735044|sp|B7GJ46|SYC_ANOFW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212559413|gb|ACJ32468.1| Cysteinyl-tRNA synthetase [Anoxybacillus flavithermus WK1] Length = 465 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 183/487 (37%), Positives = 268/487 (55%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F ++P+ ++MYVCGPTVY++ HIGNARP IVFD + R L++ E Sbjct: 3 IQVYNTLTRKKEPFIPLEPNKVKMYVCGPTVYNYIHIGNARPAIVFDTIRRYLQFRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+ +P I + + + +D T L C PR Sbjct: 62 -VQYVSNFTDVDDKLIRAARELGEDVPT------IAERFIEAYFEDITALGCKKADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I I+ +I G+AYE + ++ + T +YG S + +DE K G R+ Sbjct: 115 VTENIDTIIQFIEQLIEKGYAYEVDGDVYYRTRRFSDYGKLSHQSVDELKSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDPLDFALWKAAKEGEIYWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNFI +++++ + Sbjct: 235 HENEIAQSEALTG-KPFAKYWLHNGYINIDNEKMSKSLGNFILVHDII-------KQVDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLSA 354 V+R ML HYR PI+++ ++RL A L ++ST+ D L+ Sbjct: 287 QVLRFFMLSVHYRHPINYSQPLLESARSGLERLKTAYANLKHRLESSTNLTTNDEQWLAK 346 Query: 355 LY-----------NDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHIL 392 + +D NT + I L +LA+++ +NH L F +L Sbjct: 347 IEELRNEFIREMDDDFNTANGIAVLFELAKQANVYLMENHTSQQVIQAFLQQFEQLFDVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + ++ L + IE L+Q+R+ K + F+ AD IR +L++K ILED P Sbjct: 407 GLSLQQDEL---LDEEIEALIQQRIEARKNRDFALADRIRDELKAKNIILED--TPQG-- 459 Query: 453 RMTRWKQ 459 TRW++ Sbjct: 460 --TRWRR 464 >gi|253731134|ref|ZP_04865299.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725099|gb|EES93828.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 466 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKIANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|241758928|ref|ZP_04757040.1| cysteine--tRNA ligase [Neisseria flavescens SK114] gi|241320749|gb|EER56982.1| cysteine--tRNA ligase [Neisseria flavescens SK114] Length = 477 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 261/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F I+P N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFTPINPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY A N+++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAVNDDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 345 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 346 EFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 405 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S IE L+ R K ++ +D IR L ILED Sbjct: 406 LQRDPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 463 >gi|77165712|ref|YP_344237.1| cysteine--tRNA ligase [Nitrosococcus oceani ATCC 19707] gi|254433143|ref|ZP_05046651.1| cysteinyl-tRNA synthetase [Nitrosococcus oceani AFC27] gi|109894913|sp|Q3J8Y9|SYC_NITOC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|76884026|gb|ABA58707.1| cysteinyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707] gi|207089476|gb|EDZ66747.1| cysteinyl-tRNA synthetase [Nitrosococcus oceani AFC27] Length = 485 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 188/490 (38%), Positives = 270/490 (55%), Gaps = 66/490 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ EF I+ +RMYVCG TVYD H+G+AR M+VFD++ R LR E Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++I +T++ Q +D L L P +PR Sbjct: 61 -VIYVRNITDIDDKIIHRANER------GESIHTLTARYIQALHEDEASLQILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++ +++ ++ G+AY+ N +I +D S YG+ S R +++ + G RV Sbjct: 114 ATESMEAILAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP WESPWG GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A K N W+HNGF+ L KMSKS GNF T+ E+LE + Sbjct: 234 HHENEIAQSEAATG-GKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLE-------HYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGII------ 347 V+R +L +HYR P+++T Q+L A+ +++ ++++G+ Sbjct: 286 PEVLRYFILSSHYRSPLNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDG 345 Query: 348 -DPAVL---SALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFNASAHILGI 394 DP VL A+ +D NT A+ L+++ A ++ K L + + ILG+ Sbjct: 346 GDPFVLRFREAMDDDFNTPEALALLNEVRHALNRAREAGDTEKGQSLAVLLRSLGGILGL 405 Query: 395 EVC--KEHLNKNISIA------------------IEKLVQERLILLKMKKFSSADYIRKQ 434 ++ L + +A IE+LV +R + K K ++ AD IR Sbjct: 406 LAHEPEQFLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGI 465 Query: 435 LESKGFILED 444 L+ +G LED Sbjct: 466 LKDQGITLED 475 >gi|93005831|ref|YP_580268.1| cysteinyl-tRNA synthetase [Psychrobacter cryohalolentis K5] gi|109894926|sp|Q1QC19|SYC_PSYCK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|92393509|gb|ABE74784.1| cysteinyl-tRNA synthetase [Psychrobacter cryohalolentis K5] Length = 488 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 267/487 (54%), Gaps = 63/487 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ IY++L + F+ + + MYVCG TVYD+ HIG+AR M+ FD+ R L + Sbjct: 13 QLVIYDSLTGRKQAFKPLATGKVGMYVCGMTVYDYCHIGHARVMVGFDMAVRWLAQLGYD 72 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITDIDDKII RA + + I +T + +D T L CL+P +P Sbjct: 73 --VNYVRNITDIDDKIITRAAEN------GEEIGTLTQRFITAMHEDATALGCLSPDAEP 124 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT+HI +M +I+ ++ + +AY +N ++ + S +YG S+R +D+ + G+RV + Sbjct: 125 RATDHIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDDMQAGSRVEVE 184 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK + P EP W S WG+GRPGWHIECSAMS+ LG FDIHGGG DL F Sbjct: 185 NDKRNPFDFVLWKAAKPDEPQWASAWGQGRPGWHIECSAMSTKCLGNTFDIHGGGHDLQF 244 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A E N W+H GF+N++G KMSKS GNF TI +++ + Sbjct: 245 PHHENEIAQSEAATGCEYARN-WMHVGFINVDGEKMSKSLGNFFTIRDVMA-------KY 296 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKG---IIDPAVLS-- 353 +R +L +HYR ++F+ L E+ LS+ Q KG IID A+++ Sbjct: 297 LPETVRFFLLSSHYRSQVNFSDSALDESHNSLSRLYQALKVAEQQKGKVLIIDEALINNA 356 Query: 354 -----------ALYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASAHILGI----- 394 A+ +D N+ +AI L LAR+ ++K D+ + + H+ + Sbjct: 357 YASAVGQDFIKAMNDDFNSSTAISVLFGLARDINKASKAQDVETAWQLAQHLKALAQTLN 416 Query: 395 ---------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 EV ++ L AI+ L+ ER K F+ AD IR QL+ G Sbjct: 417 ILQQPVQQFLQAVIGEVAEDSLTDE---AIDGLIIERADAKTNKNFARADEIRVQLKEAG 473 Query: 440 FILEDYK 446 LED + Sbjct: 474 IELEDSR 480 >gi|330817521|ref|YP_004361226.1| Cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] gi|327369914|gb|AEA61270.1| Cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] Length = 464 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 187/468 (39%), Positives = 255/468 (54%), Gaps = 42/468 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ HIG+AR M+VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHIGHARMMVVFDIVQRWLRQL-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +TS+ +D L P H+ Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIGELTSRFIAAMHEDLDALGVERPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT++IPQM+ +I + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATHYIPQMLGMIAALEANGYAYQAKDGDVNYAVRKFANYGRLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P EP W+S +GRGRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKRAKPEEPADTSWDSKYGRGRPGWHIECSAMGCTLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNTWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDPA---- 350 + A V+R + THYR P++++ L +A L++ + +DP Sbjct: 288 --KYDAEVVRFFIARTHYRSPLNYSEVHLDDARAALTRLYTALKDVTPDGAPLDPDEPHA 345 Query: 351 --VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNA----------SAHILGIEV 396 +A+ +D NT A+ L +LA E + D L F A + Sbjct: 346 QRFAAAMNDDFNTALAVSVLFELAGEVNRTRDAALARQFKQLGALLGLLGRDARAFLQQA 405 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + AIE + ER+ + K ++ AD IR L G LED Sbjct: 406 TGAGADALDGEAIEACIAERVAAKQAKNYAEADRIRAALLEAGVALED 453 >gi|257424643|ref|ZP_05601070.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427311|ref|ZP_05603710.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429947|ref|ZP_05606331.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257432649|ref|ZP_05609009.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257435553|ref|ZP_05611601.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282903117|ref|ZP_06311008.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|282904907|ref|ZP_06312765.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282907857|ref|ZP_06315692.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910170|ref|ZP_06317974.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913362|ref|ZP_06321151.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282918317|ref|ZP_06326054.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282923279|ref|ZP_06330959.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|283957327|ref|ZP_06374780.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500408|ref|ZP_06666259.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|293509353|ref|ZP_06668064.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] gi|293523940|ref|ZP_06670627.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|257272213|gb|EEV04336.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275504|gb|EEV06977.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279144|gb|EEV09745.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257282064|gb|EEV12199.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257284744|gb|EEV14863.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282314147|gb|EFB44537.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|282317451|gb|EFB47823.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282322394|gb|EFB52716.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282325562|gb|EFB55870.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328241|gb|EFB58519.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331732|gb|EFB61243.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596072|gb|EFC01033.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|283790778|gb|EFC29593.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920903|gb|EFD97964.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095413|gb|EFE25674.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|291467450|gb|EFF09965.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] Length = 471 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/473 (37%), Positives = 270/473 (57%), Gaps = 47/473 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--Q 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ + ++P I K F +D L T Sbjct: 63 GYNVEYVSNFTDVDDKLIKRSQELNQTVPE------IAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 349 --PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHI 391 A+L + + +D NT +AI A + LA+ E+T + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ + + ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 461 >gi|330998823|ref|ZP_08322550.1| cysteine--tRNA ligase [Parasutterella excrementihominis YIT 11859] gi|329576037|gb|EGG57556.1| cysteine--tRNA ligase [Parasutterella excrementihominis YIT 11859] Length = 464 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 190/460 (41%), Positives = 263/460 (57%), Gaps = 29/460 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R + F++I P + MYVCG TVYD HIG+ R I FDV R L+ + Sbjct: 3 LKIYNTLSRSVEPFKSITPEKVGMYVCGVTVYDDCHIGHGRTFIAFDVARRWLQESGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TD+DDKII+RA E +P S + T++ +D L CL P+ +PR Sbjct: 62 -VKFVRNVTDVDDKIIKRA-AERKILP-----SELAETYTKRMQEDLGELGCLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IP+M+ LI+ + G+AY+ N ++ F YG+ S +K+DE + G RV + Sbjct: 115 ATQYIPKMLALIEKLEEKGYAYQDKNGDVDFSVRKFKPYGALSGKKVDELQPGERVRVEE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWKR+ P EP W+S WG+GRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 175 AKQDPLDFALWKRAKPGEPEWDSKWGKGRPGWHIECSAMSCDLLGETFDIHGGGPDLMFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-ETKKFGGRSW 302 HHENEIAQS A+ +K N W+H+G L + G KMSKS GNF TI + L ET G Sbjct: 235 HHENEIAQSEAANG-KKFVNTWMHSGPLRVNGEKMSKSLGNFWTIRDALKETNTQYGDKN 293 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEA-EILLSKWPQTSTSKGIIDP---------AVL 352 +R +L +HYR PIDF+ + +A + L+ + + +P Sbjct: 294 GNETLRFFLLRSHYRSPIDFSSALVEDAHQALIRLYTALKNTPADDNPLDWNEKYAAQFK 353 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI------EVCKEHLNKN 404 A+ +D NT A+ L +LA+E TK+ +L +LGI K ++ Sbjct: 354 EAMDDDFNTAQAVAVLFELAKEVNQTKSPELARQLKKLGGVLGILQLDPEAFVKGAVDSV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A+E L+ ER K ++ AD IRK+L K +LED Sbjct: 414 DEAAVEALIAERKAAKAAKNWARADEIRKELLEKNIVLED 453 >gi|331082990|ref|ZP_08332109.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA] gi|330399727|gb|EGG79388.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA] Length = 468 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 189/478 (39%), Positives = 262/478 (54%), Gaps = 58/478 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL +K EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R + Y E Sbjct: 1 MRIYNTLTKKKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E S I+S+ ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIAKAVEEGVSA------EEISSRYIKECKKDMADMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ ++ G AYE N + F + YG S + +++ + G R V Sbjct: 113 ATQEIDGMIDMIQTLMDKGFAYEVNGTVYFRVKNFKEYGKLSHKNLEDLQSGFRSLQVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 ENQKEDPLDFVLWKPKKEGEPFWVSPWSEGRPGWHIECSVMSKKYLGEEIDIHAGGEDLV 232 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CC + + A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSECCNGK--QFARYWMHNAFLNIDNRKMSKSLGNFFTVREI-------GE 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-----------------SKWPQTSTS 343 + V+R ML HYR P++F+ + + ++ L K T T Sbjct: 284 KYDLQVLRFFMLNAHYRSPLNFSAELMEASKNSLERIITCVEQLKHLLETAEKTEMTETE 343 Query: 344 KGIIDPAVL-------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFNASA 389 K ++ VL +++ +D NT AI A+ +L A E++ + +F+ Sbjct: 344 KA-LEVEVLEYVKKYENSMEDDFNTADAIAAIFELVKFANTKANENSTAAFVQYLFDTIV 402 Query: 390 H---ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 H +LG+ V KE + + IEKL++ER + K K F AD IR +L + G IL+D Sbjct: 403 HLSDVLGLIVNKEA--EILDEEIEKLIEERQMARKEKNFKRADEIRDELAAMGIILKD 458 >gi|57651406|ref|YP_185462.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87160084|ref|YP_493218.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194292|ref|YP_499084.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220704|ref|YP_001331526.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|262049572|ref|ZP_06022441.1| cysteinyl-tRNA synthetase [Staphylococcus aureus D30] gi|262052418|ref|ZP_06024618.1| cysteinyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|284023539|ref|ZP_06377937.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132] gi|294850305|ref|ZP_06791039.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9754] gi|61216110|sp|Q5HIE5|SYC_STAAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894946|sp|Q2FJB0|SYC_STAA3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123291881|sp|Q2G2M6|SYC_STAA8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|172048774|sp|A6QEI2|SYC_STAAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631648|sp|A8YZM7|SYC_STAAT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57285592|gb|AAW37686.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87126058|gb|ABD20572.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201850|gb|ABD29660.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373504|dbj|BAF66764.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|259159664|gb|EEW44708.1| cysteinyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|259162312|gb|EEW46885.1| cysteinyl-tRNA synthetase [Staphylococcus aureus D30] gi|294822817|gb|EFG39252.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9754] gi|302332243|gb|ADL22436.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JKD6159] gi|315196659|gb|EFU27006.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01] gi|320141606|gb|EFW33445.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320141766|gb|EFW33594.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329731047|gb|EGG67420.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189] Length = 466 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|330810612|ref|YP_004355074.1| Cysteine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378720|gb|AEA70070.1| Cysteine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 460 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 264/478 (55%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDI+DKII RAR+ + +T + + +D RL L P +PR Sbjct: 61 -LTYVRNITDIEDKIINRAREN------GEPYDALTERMIKAMHEDEARLNILKPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M+ +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMLSMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGAKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALY 356 V+R ++ +HYR I+++ L +A+ L ++ P + G A + + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPSVPAAGGEAFVARFTEVM 345 Query: 357 N-DLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 N D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLNAAAGLAARLKELASVLGVLQLEADDFLQAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR QL + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLTARANKDWAESDRIRDQLTAMGVVLED------GKGGTTWR 457 >gi|255067745|ref|ZP_05319600.1| cysteine--tRNA ligase [Neisseria sicca ATCC 29256] gi|255047956|gb|EET43420.1| cysteine--tRNA ligase [Neisseria sicca ATCC 29256] Length = 483 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 257/482 (53%), Gaps = 58/482 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K + +YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R L Sbjct: 10 KMLNLYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLC---- 65 Query: 63 EKC---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 +C +TYVRNITDIDDKII RA + + I +T++ Q +D L L P Sbjct: 66 -ECGYPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRP 118 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 +P+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G R Sbjct: 119 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGER 178 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG Sbjct: 179 VEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGA 238 Query: 239 DLIFPHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNG 283 DL FPHHENEIAQS A I W+HNGF+ ++G KMSKS G Sbjct: 239 DLQFPHHENEIAQSVGATGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLG 298 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--- 340 NF TI E+L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 299 NFFTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKN 351 Query: 341 --------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAH 390 S + +A+ +D TV A+ L +LA E K +D L A Sbjct: 352 TPAAEFELSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAYLAGCLKALGG 411 Query: 391 ILGI--EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 I+G+ E L + IE L+ +R K ++ +D IR L IL Sbjct: 412 IIGLLQRDPTEFLQGGAVSDGLSNEEIEDLIAQRKQARSDKNWAESDRIRDLLNEHKIIL 471 Query: 443 ED 444 ED Sbjct: 472 ED 473 >gi|297735988|emb|CBI23962.3| unnamed protein product [Vitis vinifera] Length = 513 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 184/500 (36%), Positives = 265/500 (53%), Gaps = 75/500 (15%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNT+ ++ + + + MYVCG T YD +H+G+ R + FDVLYR L++ E Sbjct: 6 ELRVYNTMTQQKEILKPVVDGKVSMYVCGVTAYDLSHLGHGRAAVSFDVLYRYLQHLGYE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN TD+DDKII RA + + + ++S Q+++ D T L CL+PTHQP Sbjct: 66 --VTYVRNFTDVDDKIIRRANE------LGENPLTLSSHFCQEYLDDMTDLHCLSPTHQP 117 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R ++H+ Q+ +I II + AY + ++ F PNYG S RK++ + G RV Sbjct: 118 RVSDHMDQIKDMITQIINNDCAYTIDGDVYFAVDKSPNYGRLSGRKLENNRAGERVAVDS 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAMS+HYL FDIHGGG+DLIFP Sbjct: 178 RKRNPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSC A + E + W+HNG + KMSKS GNF TI ++ + + Sbjct: 238 HHENEIAQSCAACQ-ESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITDL-------YH 289 Query: 304 APVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSKGIIDP 349 +R +L THYR P+++++ Q L + E LS + + + I P Sbjct: 290 PLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSLFQEVNGRNVCIAP 349 Query: 350 AV-----------LSALYNDLNT-------------------------------VSAIQA 367 A + + +DL+T +SA+++ Sbjct: 350 AAQDCIRTLQTDFQTKMSDDLSTPHILNASLQEALRFINSCLNMLKKKQQKQQQLSAVES 409 Query: 368 LHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKK 424 L KL +E +L + + A+ ++ K K I + L++ER + K K Sbjct: 410 LTKLGKEVKGVLSVLGLLSTLAYSEVLQQLKGKALKRAGMIEDDVLHLIEERALARKNKD 469 Query: 425 FSSADYIRKQLESKGFILED 444 FS D IR L SKG L D Sbjct: 470 FSKGDQIRADLASKGIALMD 489 >gi|260589563|ref|ZP_05855476.1| cysteine--tRNA ligase [Blautia hansenii DSM 20583] gi|260540131|gb|EEX20700.1| cysteine--tRNA ligase [Blautia hansenii DSM 20583] Length = 468 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 185/477 (38%), Positives = 262/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL +K EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R + Y E Sbjct: 1 MRIYNTLTKKKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E S I+S+ ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIAKAVEEGVSA------EEISSRYIKECKKDMADMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ ++ G AYE N + F + YG S + +++ + G R V Sbjct: 113 ATQEIDGMIDMIQTLMDKGFAYEVNGTVYFRVKNFKEYGKLSHKNLEDLQSGFRSLQVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 ENQKEDPLDFVLWKPKKEGEPFWVSPWSEGRPGWHIECSVMSKKYLGEEIDIHAGGEDLV 232 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CC + + A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSECCNGK--QFARYWMHNAFLNIDNRKMSKSLGNFFTVREI-------GE 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------PQTSTSK 344 + V+R ML HYR P++F+ + + ++ L + + + + Sbjct: 284 KYDLQVLRFFMLNAHYRSPLNFSAELMEASKNSLERIITCVEQLKHLLETAEKTEMTAEE 343 Query: 345 GIIDPAVL-------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFNASAH 390 ++ VL +++ +D NT AI A+ +L A E++ + +F+ H Sbjct: 344 KALEAEVLEYVKKYENSMEDDFNTADAIAAIFELVKFANTKANENSTAAFVQYLFDTIVH 403 Query: 391 ---ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ V KE + + IEKL++ER + K K F AD IR +L + G IL+D Sbjct: 404 LSDVLGLIVNKEA--EILDEEIEKLIEERQMARKEKNFKRADEIRDELATMGIILKD 458 >gi|298369710|ref|ZP_06981027.1| cysteine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282267|gb|EFI23755.1| cysteine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 473 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 257/482 (53%), Gaps = 66/482 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F I+P N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 4 IYNTLTRQKEPFTPINPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 58 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 59 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV Sbjct: 113 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F Sbjct: 173 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 232 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 233 PHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 292 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 I E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNT--- 342 Query: 348 DPAV---------------LSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAH 390 PAV +A+ +D TV A+ L +LA E K +D L A Sbjct: 343 -PAVAFELSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGG 401 Query: 391 ILGI--EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 I+G+ E L + IE L+ R K ++ +D IR L IL Sbjct: 402 IIGLLQRDPTEFLQGGAVSDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIIL 461 Query: 443 ED 444 ED Sbjct: 462 ED 463 >gi|306819816|ref|ZP_07453471.1| cysteine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552185|gb|EFM40121.1| cysteine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 466 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 187/473 (39%), Positives = 253/473 (53%), Gaps = 50/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ K EF I+ ++MY CGPTVY++ HIGNARP IVFDVL L Y E Sbjct: 1 MKIYNTMTMKKEEFHEIEKGKVKMYSCGPTVYNYFHIGNARPFIVFDVLRNYLEYIGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII++A +E S AI + K ++ KD + T PR Sbjct: 60 -VTFVQNFTDVDDKIIKKANEEGIS-----AIEV-ADKYIDEYYKDAAAIGIRKATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I ++I IQ++I G AY ++ F+ YG S + IDE G R+ Sbjct: 113 VTENIKEIIGFIQDLIDKGFAYVLGGDVYFEVKKFDEYGKLSHKNIDELISGARIDVNEQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK E GW+SPWG GRPGWHIECS MS+ YLG DIH GG DLIFPH Sbjct: 173 KKSPLDFALWKEKKEGEIGWDSPWGVGRPGWHIECSVMSNKYLGANIDIHSGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + AN W+HNG++N++ KMSKS GNF T+ ++L + + Sbjct: 233 HENEIAQSECKNGC-TFANYWMHNGYINIDNVKMSKSLGNFFTVRDVL-------KVYDG 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI-------- 346 V+R ML +HYR PI+++ L A+ L + Q S K + Sbjct: 285 DVLRFFMLTSHYRSPINYSKDLLDSAKSSLDRIKNCKSSLDFSLQKSQDKEVSQEEKDIL 344 Query: 347 -----IDPAVLSALYNDLNTVSAIQA---LHKLARESTKNH-------DLLPIFNASAHI 391 I + + +DLNT AI A L KLA S + +L + N + Sbjct: 345 ENVQAIKSTFIEKMNDDLNTADAITAIFDLVKLANTSVNENSSKTFVQSILSMLNELTAV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L I E + + IE+L++ R K K F+ AD IR++L G ++D Sbjct: 405 LNI-ANNEKAEEQDTSKIEELIELRNQAKKSKDFAKADEIREELRKMGIEIKD 456 >gi|291546868|emb|CBL19976.1| cysteinyl-tRNA synthetase [Ruminococcus sp. SR1/5] Length = 469 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 191/489 (39%), Positives = 264/489 (53%), Gaps = 61/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ++ ++MYVCGPTVY+ HIGNARPMI+FD + R + Y E Sbjct: 1 MKIFNTLTRRKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIIFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+++ ++ KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGVSA------EEISTRYIKECKKDMADMNVKPATTAPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ +I G+AY A+ + F YG S + +D+ + G R V Sbjct: 113 ATQEIQGMIDMIQTLIDKGYAYPAADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLKVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPSWPSPWCDGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS CC +I A W+HNGFLN++ RKMSKS GNF T+ ++ G Sbjct: 233 IFPHHENEIAQSECCNGKI--FARYWMHNGFLNIDNRKMSKSLGNFRTVRQI-------G 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP 349 + V+R ML HYR P++F +++R+ EA LS ++ I + Sbjct: 284 EQYDLQVLRFFMLNAHYRSPLNFSADLMEAAKNSLERILEAAGKLSDRKDNGAAENITEE 343 Query: 350 AVL-------------SALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFN 386 + +A+ +D NT A+ A+ +L + + N D L Sbjct: 344 ELALLKEAEGFVAKFEAAMDDDFNTADALAAIFELVKFANTNVDENSSREFAGGLYEELF 403 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +LG+++ K E L+K IE L+QER K K F AD IR +L KG IL+D Sbjct: 404 KLSDVLGLKIEKKEEILDKE----IEDLIQERQAARKAKDFQRADEIRDELLKKGIILKD 459 Query: 445 YKNPDNGQR 453 + QR Sbjct: 460 TREGVKWQR 468 >gi|297582426|ref|YP_003698206.1| cysteinyl-tRNA synthetase [Bacillus selenitireducens MLS10] gi|297140883|gb|ADH97640.1| cysteinyl-tRNA synthetase [Bacillus selenitireducens MLS10] Length = 467 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 178/492 (36%), Positives = 270/492 (54%), Gaps = 66/492 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ FQ I+ ++MYVCGPTVY++ HIGNARP +VFD++ R L Y + Sbjct: 3 IQLYNTLTRQKETFQPIEEGKVKMYVCGPTVYNYIHIGNARPAVVFDMVRRYLEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII+ A + +++ + + + + DT L PR Sbjct: 62 -VTYVSNFTDVDDKIIKAANE------LDEDVMTVAERYIAAYYNDTEALGVRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I +I G+AYE++ ++ F T YG S++ +D+ + G R+ + Sbjct: 115 VTESMDDIITFITRLIDKGYAYESSGDVYFRTRKFDTYGQLSQQSLDDLQAGARIQVEEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E W SPWG GRPGWHIECSAM +LG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKTAKEGEIAWSSPWGEGRPGWHIECSAMVKKHLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + ++ AN WIHNG++N++ KMSKS NFI +++++ R + Sbjct: 235 HENEIAQSEALNE-QRMANYWIHNGYINIDNEKMSKSLNNFILVHDII-------RQFDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILL------------------------SKWPQT 340 V+R ++ HYR PI+F+ ++L A+ L KW Sbjct: 287 DVVRFFIVNAHYRSPINFSDEQLETAKTSLERIQTTYENLTYRLGESADLGGGQDKWFAL 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARES----TKNHD-------LLPIFNASA 389 +G ++++ +D N+ +A+ + L R++ T+ H L F+ A Sbjct: 347 IRKEG---ERFIASMDDDFNSANAVAVMFDLVRQANIYLTEKHTSKEVLEAFLKQFDDMA 403 Query: 390 HILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI V + E L+++ +E+L++ER+ K + F+ AD IR L+ +G ILED Sbjct: 404 FVLGIAVKRQAELLDED----VEQLIEERIQARKDRDFARADEIRDSLKDQGIILED--T 457 Query: 448 PDNGQRMTRWKQ 459 P TRWK+ Sbjct: 458 PQG----TRWKR 465 >gi|330972601|gb|EGH72667.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 460 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 180/478 (37%), Positives = 262/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H G R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHPGYGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIEAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAACLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR ++ + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDRITAMGVLLED------GKGGTTWR 457 >gi|303256926|ref|ZP_07342940.1| cysteine--tRNA ligase [Burkholderiales bacterium 1_1_47] gi|302860417|gb|EFL83494.1| cysteine--tRNA ligase [Burkholderiales bacterium 1_1_47] Length = 464 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 190/460 (41%), Positives = 263/460 (57%), Gaps = 29/460 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R + F++I P + MYVCG TVYD HIG+ R I FDV R L+ + Sbjct: 3 LKIYNTLSRSVEPFKSITPEKVGMYVCGVTVYDDCHIGHGRTFIAFDVARRWLQESGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TD+DDKII+RA E +P S + T++ +D L CL P+ +PR Sbjct: 62 -VKFVRNVTDVDDKIIKRA-AERKILP-----SELAETYTKRMQEDLGELGCLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IP+M+ LI+ + G+AY+ N ++ F YG+ S +K+DE + G RV + Sbjct: 115 ATQYIPKMLALIEKLEEKGYAYQDKNGDVDFSVRKFKPYGALSGKKVDELQPGERVRVEE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWKR+ P EP W+S WG+GRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 175 AKQDPLDFALWKRAKPGEPEWDSKWGKGRPGWHIECSAMSCDLLGETFDIHGGGPDLMFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-ETKKFGGRSW 302 HHENEIAQS A+ +K N W+H+G L + G KMSKS GNF TI + L ET G Sbjct: 235 HHENEIAQSEAANG-KKFVNTWMHSGPLRVNGEKMSKSLGNFWTIRDALKETNTQYGDKN 293 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEA-EILLSKWPQTSTSKGIIDP---------AVL 352 +R +L +HYR PIDF+ + +A + L+ + + +P Sbjct: 294 GNETLRFFLLRSHYRSPIDFSSALVEDAHQALIRLYTALKNTPADDNPLDWNEKYAAQFK 353 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI------EVCKEHLNKN 404 A+ +D NT A+ L +LA+E TK+ +L +LGI K ++ Sbjct: 354 EAMDDDFNTAQAVAVLFELAKEVNQTKSPELARQLKKLGGVLGILQLAPEAFVKGAVDSV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A+E L+ ER K ++ AD IRK+L K +LED Sbjct: 414 DEAAVEALIAERKAAKAAKNWARADEIRKELLEKNIVLED 453 >gi|221141034|ref|ZP_03565527.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302750421|gb|ADL64598.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 466 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|89893193|ref|YP_516680.1| hypothetical protein DSY0447 [Desulfitobacterium hafniense Y51] gi|219666466|ref|YP_002456901.1| cysteinyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] gi|122997351|sp|Q250Q6|SYC_DESHY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781676|sp|B8G1U2|SYC_DESHD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89332641|dbj|BAE82236.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536726|gb|ACL18465.1| cysteinyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] Length = 477 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 181/483 (37%), Positives = 258/483 (53%), Gaps = 61/483 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ + EF+ + + MY CGPTVY++ H+GN R ++VFD++ R L Y Sbjct: 3 LRLFNTMSHQKEEFKPREEGKVGMYTCGPTVYNYFHVGNGRMLVVFDMIRRYL--LYKGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII+R QE P+ A I ++ KD L + + P+ Sbjct: 61 DVTFVQNFTDIDDKIIKRG-QEEGRDPLELAQDYIG-----EYFKDAAALNLMPASIHPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI +I+ + G AY + ++ F +P YG S R +++ + G RV Sbjct: 115 ATDHIPEMIEIIKGLEEQGLAYAVDGDVYFAVDKLPAYGKLSGRTLEDMQAGARVEVGER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG FDIHGGG DL+FPH Sbjct: 175 KQNPMDFALWKNAKPGEPFWESPWGKGRPGWHIECSAMSLKYLGSGFDIHGGGGDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ E A W+HN FL + +KMSKS GNF T+ E+LE +P Sbjct: 235 HENEIAQAEGYLHGETFARYWMHNAFLTINQQKMSKSLGNFFTVREILE-------HFPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIR +L THYR P+DF + L A+ L + TS + D A+ Sbjct: 288 EVIRFYLLGTHYRSPLDFDDENLQMAQKGLER---LQTSIRLADEALGRQGQNSADAASG 344 Query: 352 --------------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------- 388 A+ +D N+ A +L +L + + P + Sbjct: 345 QKLRAAAEEARREFAEAMDDDFNSALAYASLFELGKAINAHVQAYPYSSEGLLKARATLW 404 Query: 389 --AHILGIEVCK-----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 A +LG ++ K E N+ + +E L++ R I K K + +D IR +L+ G + Sbjct: 405 ELADVLGFDLAKPANQAEAGNQKLDQVMELLLEVRAIARKKKDWEMSDLIRDRLKDLGIV 464 Query: 442 LED 444 LED Sbjct: 465 LED 467 >gi|329313250|gb|AEB87663.1| Cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131] Length = 466 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|291287685|ref|YP_003504501.1| cysteinyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290884845|gb|ADD68545.1| cysteinyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 479 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 188/481 (39%), Positives = 262/481 (54%), Gaps = 59/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL K EFQ + N+++YVCG TVYD HIG+AR VFDV+ R L + Sbjct: 2 LKVFNTLSNKKEEFQPLQKDNVKIYVCGVTVYDLCHIGHARSSGVFDVIRRYL--MFKGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII+R+ ++ A + I + D L L P H P+ Sbjct: 60 NVTFVKNFTDIDDKIIKRSNEKQMDWR-ELAANFIAEHDA-----DMDSLNILRPDHTPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I QMI + + +I G AYE+N +I + YG S RK+++ G R+ Sbjct: 114 ATDYIKQMIQMCETLIEKGFAYESNGDIYYRVQKFEEYGKLSHRKLEDMMAGARIEVSVK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S P EP WESPWG+GRPGWHIECS MS LG FDIHGGG DL+FPH Sbjct: 174 KENPYDFVLWKASKPGEPSWESPWGQGRPGWHIECSVMSEDLLGLPFDIHGGGKDLVFPH 233 Query: 245 HENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HENEIAQS C K WIHNGF+N+ KMSKS GNF TI ++L + + Sbjct: 234 HENEIAQSEAACGCMFSK---YWIHNGFVNVNQEKMSKSLGNFFTIRDVL-------KEF 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIID------- 348 A ++R ++ THYR +DF+ L EAE +L + + + K +D Sbjct: 284 DAEIVRYFLMTTHYRSALDFSQDHLLEAEKSLNRIYTMLDEISRFNAGKKGVDITKEAEK 343 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLARESTK------NHDLLP--------IFNAS 388 +A+ +D NT A+ A+ ++ RE+ + N P +F Sbjct: 344 MKETFMDKFQTAMDDDFNTPEALAAMFEVIRETNRLLGSKPNKISFPALQEAVQDVFKVI 403 Query: 389 AHILGI--EVCKEHLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLESKGFILE 443 +LGI ++ N+SI+ E+L +Q+R K K F AD IR++L+ +G L Sbjct: 404 LDVLGIVKYTPEKWFRINLSISEEELRQKIQDRADAKKDKNFELADSIRQELKQQGIELL 463 Query: 444 D 444 D Sbjct: 464 D 464 >gi|238760398|ref|ZP_04621538.1| Cysteinyl-tRNA synthetase [Yersinia aldovae ATCC 35236] gi|238701403|gb|EEP93980.1| Cysteinyl-tRNA synthetase [Yersinia aldovae ATCC 35236] Length = 461 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +P Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLQRPDLEPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIARNHAYVADNGDVMFSVESDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE T + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDMTAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|308273875|emb|CBX30475.1| Cysteinyl-tRNA synthetase [uncultured Desulfobacterium sp.] Length = 478 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 194/482 (40%), Positives = 262/482 (54%), Gaps = 59/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ERK F+ + P + MYVCGPTVYD HIG+AR +IVFDV+ + L E Sbjct: 3 LRIYNTIERKKVPFEPVQPGKVSMYVCGPTVYDSCHIGHARSVIVFDVILKYLNATGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA Q + + + ++F +D L T +P+ Sbjct: 62 -VTYVRNFTDVDDKIINRAVQ------LGIESHEVAERYIKEFYEDMDALNIKRATIEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I LI+ ++ AY + +I + +YG S RK+++ + G RV Sbjct: 115 ATEHIDKIIALIEILLKKEIAYRIDGDIYYSVDKFKDYGKLSGRKLEDMEAGARVEIDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK P EP WESPWGRGRPGWHIECSAMSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KNNPFDFALWKSQKPGEPYWESPWGRGRPGWHIECSAMSSAYLGETFDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS A EK A W+HNGF+N+ KMSKS GNF+ I ++L +S+ Sbjct: 235 HENEIAQSEGA--FEKPFAKYWVHNGFVNINHEKMSKSLGNFLLIKDIL-------KSYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID------ 348 +RL +L HYR PIDFT + + E+E L K T K I+ Sbjct: 286 PDSVRLFLLSNHYRSPIDFTDKAMEESEAALDKIYSAIQRVEEIADITGKDFINYPEGYW 345 Query: 349 PAVLSALYNDLNTVSAIQAL-------HKLARESTKNHDLLPIFNA-------SAHILGI 394 ++ +D NT I L ++L E++ + ++ I N+ ++GI Sbjct: 346 EKFCESMDDDFNTAKGIGYLFDSVRHINRLLDENSNSDEIKTIINSIYADIRKMGDVIGI 405 Query: 395 --EVCKEHLNKNISIAIE----------KLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 E + + NK + IE LV++R K K + AD IR +L I+ Sbjct: 406 LSEPAEIYFNKKKTKFIETKDVDPSLIDALVKQRFEARKAKDWKKADRIRDKLSGIDVII 465 Query: 443 ED 444 ED Sbjct: 466 ED 467 >gi|21282214|ref|NP_645302.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49485394|ref|YP_042615.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208757|ref|ZP_06925185.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912847|ref|ZP_07130289.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] gi|24418688|sp|Q8NXY7|SYC_STAAW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56749395|sp|Q6GBV8|SYC_STAAS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21203650|dbj|BAB94350.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49243837|emb|CAG42262.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|296886702|gb|EFH25607.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885951|gb|EFK81154.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 466 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDRGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|314932753|ref|ZP_07840122.1| cysteine--tRNA ligase [Staphylococcus caprae C87] gi|313654434|gb|EFS18187.1| cysteine--tRNA ligase [Staphylococcus caprae C87] Length = 466 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 262/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMQEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGKGRPGWHIECSVMAYHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + + + S I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREAIATDLEEHSEYIDQI 345 Query: 348 DPAVL---SALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + + + +D NT +A+ A + LA+ + K H ++ + +LG Sbjct: 346 ETILRQFEAVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLHRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + E+ N+ + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLKGENENELLDEDIEKLIEERNEARKNKDFARADEIRDMLKERNIILED 456 >gi|225017556|ref|ZP_03706748.1| hypothetical protein CLOSTMETH_01483 [Clostridium methylpentosum DSM 5476] gi|224949706|gb|EEG30915.1| hypothetical protein CLOSTMETH_01483 [Clostridium methylpentosum DSM 5476] Length = 464 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 182/472 (38%), Positives = 264/472 (55%), Gaps = 50/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF+ I P+ + MY CGPTVY++ HIGNARP+IVFD L R + G K Sbjct: 1 MKVYNTLTRQKEEFKTIHPNEVDMYACGPTVYNYIHIGNARPIIVFDCL-RSYFEFRGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII++A +E S I+ K +++ KD L T P+ Sbjct: 60 -VKFVQNFTDVDDKIIKKANEEGVEA------SEISEKYIKEYEKDAKGLNVRPATIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I ++Q+++ +G+AYE+ ++ F T+ YG S +++ + G RV Sbjct: 113 VTQSMDMIIDIVQHLVDNGYAYESQGDVYFRTTKFKEYGKLSHMPLEDLEAGNRVEVSDI 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP W+SPWG+GRPGWHIECSAM+++YLGK D+H GG DLIFPH Sbjct: 173 KEDPMDFAVWKAAKPGEPAWDSPWGKGRPGWHIECSAMATNYLGKTIDLHCGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN W+HNG++N++ RKMSKS GNF T+ E+ E KFG Sbjct: 233 HENEIAQSECATGA-VFANYWMHNGYINVDNRKMSKSLGNFFTVREVAE--KFGYEP--- 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------TSTSKGII 347 IR ML HYR PI++ V+ + + + L + T K I Sbjct: 287 --IRYMMLQAHYRSPINYNVEVIEQCKASLERMYNFKKNIAFALSKAEDGEFTDKQKEAI 344 Query: 348 ---DPAVLSALYNDLNTVSAIQALHKLARE----------STKNHDLLP--IFNASAHIL 392 + A+ +D NT AI A+ +L R+ +K H L IF+ +L Sbjct: 345 LARKQQFIDAMEDDFNTADAISAVFELIRDINPLISGETLGSKQHIALAKEIFDELIGVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G+ + I + LV++R K K F AD +R ++ G+ +E+ Sbjct: 405 GL--LYNDKEEEIPAEVTALVEQRAAARKEKNFKLADELRDRIGELGYAIEE 454 >gi|296313701|ref|ZP_06863642.1| cysteine--tRNA ligase [Neisseria polysaccharea ATCC 43768] gi|296839719|gb|EFH23657.1| cysteine--tRNA ligase [Neisseria polysaccharea ATCC 43768] Length = 475 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 259/478 (54%), Gaps = 58/478 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C Sbjct: 6 IYNTLTRQKEPFTPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 60 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P Sbjct: 61 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDANALGVLRPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT +IPQMI +I+ +I + AY AN ++ + YG S + +D+ + G RV Sbjct: 115 KATENIPQMIAMIETLIQNSKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + LG FDIHGGG DL F Sbjct: 175 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLLGDTFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCAD---------------RIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T Sbjct: 235 PHHENEIAQSVGASGHSCGHNHAQTHYGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 294 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKG 345 I E+L + + V+R +L HYR P++++ L +A+ L++ T +T Sbjct: 295 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 347 Query: 346 IIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG- 393 D + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 348 AFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGL 407 Query: 394 -----IEVCKEH-LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE + ++ +S I+ L+ R K + +D IR L ILED Sbjct: 408 LQRDPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWVESDRIRDLLNEHKIILED 465 >gi|253732537|ref|ZP_04866702.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|253729466|gb|EES98195.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|329731981|gb|EGG68337.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193] Length = 466 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+ ++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKELVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|74317920|ref|YP_315660.1| cysteinyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259] gi|109894959|sp|Q3SHN1|SYC_THIDA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|74057415|gb|AAZ97855.1| Cysteinyl-tRNA synthetase, class Ia [Thiobacillus denitrificans ATCC 25259] Length = 454 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 187/475 (39%), Positives = 264/475 (55%), Gaps = 41/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I N+L R EF + P +RMYVCG TVYD H+G+AR +VFD++ R LR Sbjct: 2 LHITNSLTRTKEEFVPLSPGRVRMYVCGMTVYDLCHLGHARVFVVFDMVTRWLRA--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA E+ P + +T + + +D L L P H+PR Sbjct: 60 AVEYVRNITDIDDKIIKRA-HENKETP-----AALTERFIAEMHEDERALGVLPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ QM+ LI ++ G AY A N ++ + P YG S + +DE + G RV Sbjct: 114 ATAYVAQMLALIAQLVDRGLAYAAPNADVYYSVRGFPAYGRLSGKSLDELRAGERVEVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP WESPWG+GRPGWHIECSAMS+ LG+ FDIHGGG DL FP Sbjct: 174 NKRDPMDFVLWKAAKPGEPAWESPWGQGRPGWHIECSAMSAELLGQHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+L+ + Sbjct: 234 HHENEIAQSEGAHGC-TFVNYWLHNGFVRVDNEKMSKSLGNFFTIREVLQ-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTSKGIID---PAVL---SA 354 A ++R +L HYR P++++ L +A L++ + + + G +D PA A Sbjct: 286 AEIVRFFILRAHYRSPLNYSDAHLDDARGALTRLYTALKGAPAAGPVDWDAPAAARFRGA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGI--EVCKEHLNKNISIA--- 408 + +D NT AI L +LA E+ + + ++G+ + L S A Sbjct: 346 MDDDFNTPEAIAVLFELAAEANRGDTGAAQTLRNLGAVIGLLQRDASDFLQAGTSEAGLD 405 Query: 409 ---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE + R K + F+ +D IR +L + G +LED G T W+++ Sbjct: 406 ASEIEARIAARQAARKARDFAESDRIRDELAAAGIVLED------GPGGTTWRRQ 454 >gi|13877761|gb|AAK43958.1|AF370143_1 putative cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|15293251|gb|AAK93736.1| putative cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|20197327|gb|AAM15026.1| putative cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|20197896|gb|AAD20662.2| putative cysteinyl-tRNA synthetase [Arabidopsis thaliana] Length = 493 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 188/488 (38%), Positives = 263/488 (53%), Gaps = 72/488 (14%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + RK F+ + MYVCG T YD +HIG+AR + FDVL R L++ E V+YVR Sbjct: 1 MSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGYE--VSYVR 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII RA++ D IS+ + + ++F +D +L CL P+ QPR ++HIP Sbjct: 59 NFTDVDDKIIARAKELE-----EDPISL-SRRFCEEFNRDMEQLQCLDPSVQPRVSDHIP 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 Q+I LI+ I+ +G+AY+ + +I F P YG S RK+++ + G RV KK+PAD Sbjct: 113 QIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVDTRKKHPAD 172 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK + EP WESPWGRGRPGWHIECSAMS+ YLG FDIHGGG+DL+FPHHENEIA Sbjct: 173 FALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIA 232 Query: 251 QSCCADRIEKTANI--WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 QSC A ++NI WIHNGF+ ++ KMSKS GNF TI ++++ + +R Sbjct: 233 QSCAAC---DSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-------YHPLALR 282 Query: 309 LAMLMTHYREPIDFT--------------VQRLTEAEILLSKWPQT-------------- 340 L ++ THYR PI+++ Q L + E L + T Sbjct: 283 LFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENGSVPSDTLTSI 342 Query: 341 ---------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHI 391 S S ++ P L+A+ L T++ + K +++ + L + + Sbjct: 343 NTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIHTRKGKKQARREESLKALETTIRDV 402 Query: 392 LGI------------EVCKEHLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLE 436 L I E KE K + E + VQER K K++ +D IRK L Sbjct: 403 LTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQRVQERTDARKNKEYERSDAIRKDLA 462 Query: 437 SKGFILED 444 G L D Sbjct: 463 KVGIALMD 470 >gi|320325346|gb|EFW81413.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. B076] gi|320327670|gb|EFW83678.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882429|gb|EGH16578.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 460 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 180/478 (37%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +R+YVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRIYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE T L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED G+ T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLED------GKGGTTWR 457 >gi|148827229|ref|YP_001291982.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittGG] gi|187629826|sp|A5UFP3|SYC_HAEIG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148718471|gb|ABQ99598.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittGG] Length = 459 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 266/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWSSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGADQSAVVFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K + AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEVLIKQRNEARAAKDWPVADAARNELTAMGIVLED------GPNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|153855861|ref|ZP_01996836.1| hypothetical protein DORLON_02858 [Dorea longicatena DSM 13814] gi|149751829|gb|EDM61760.1| hypothetical protein DORLON_02858 [Dorea longicatena DSM 13814] Length = 468 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 187/478 (39%), Positives = 259/478 (54%), Gaps = 58/478 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ +K EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTMTKKKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGVTA------DEISKRYIAECKKDMDGMNIKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +IQ +I G AYE N + + T +YG S + +D+ + G R V Sbjct: 113 ATEEICGMVDMIQTLIDKGFAYEKNGTVYYSTRKFKDYGKLSHKNLDDLRSGERSLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKSLGNFRTVREISE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID--- 348 + V+R ML HYR P++F+ ++R+ A L + + ++ I D Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERIVNAADNLKFLMENAKAEAITDAEA 344 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 A+ +D NT A+ A+ L + ES+K + L + Sbjct: 345 ENFAKTEEFVAGFEKAMDDDFNTADAVAAIFDLVKYINTTTDAESSKEYLQKLFDLLVKL 404 Query: 389 AHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ V K E L+++ IEKL++ER K K F+ AD IR +L KG IL+D Sbjct: 405 TGVLGLIVDKKEEILDED----IEKLIEERQAARKAKDFARADAIRDELLEKGIILKD 458 >gi|92114173|ref|YP_574101.1| cysteinyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] gi|123084029|sp|Q1QVV6|SYC_CHRSD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91797263|gb|ABE59402.1| cysteinyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] Length = 461 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 181/469 (38%), Positives = 259/469 (55%), Gaps = 43/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ F +D +RMYVCG TVYD+ HIG+AR M+ FD++ R LR+ E Sbjct: 1 MQIYNTLTRRKETFTPLDAGRVRMYVCGITVYDYCHIGHARVMVAFDMITRYLRWRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI++RA + ++ I+ +T + +D RL L P +PR Sbjct: 60 -VDYVRNITDIDDKILKRAEEN------DEPIAALTERMIAAMHEDEGRLGVLRPDREPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ ++ ++Q +I G+AY AN ++ + YG S R +D+ + G+RV + Sbjct: 113 ATAHVDDIVAMVQRLIDKGYAYPAANGDVYYRVRRFEGYGKLSNRDLDDMRAGSRVEVET 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P E W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 173 AKEDPLDFVLWKAAKPGEASWPSPWGDGRPGWHIECSAMSTCCLGDTFDIHGGGPDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+H G + ++ KMSKS GNF TI E+LE Sbjct: 233 HHENEIAQSEAATG-RPYVNTWMHAGAVRVDQEKMSKSLGNFFTIREVLEAH-------- 283 Query: 304 AP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVLSA 354 AP V+R +L +HYR PI++ L++A L ++ P ++A Sbjct: 284 APEVVRYLLLASHYRSPINYAPDALSDARRSLERFYNALQGVAPVAGEVAAGYRERFIAA 343 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPI--------FNASAHILGI-----EVCKEHL 401 + +D NT A+ L LARE + P +LG+ E + Sbjct: 344 MDDDFNTAEALAVLFDLARELNRAKQEAPAHAPALAHELKELGGVLGLFGQDPEGFLQAG 403 Query: 402 NKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + ++ IE ++ R K K F++AD IR +L + G +L+D ++ Sbjct: 404 AGRLPMSEEDIEARIEARAQAKKAKDFATADGIRDELAALGIVLKDGRD 452 >gi|297590580|ref|ZP_06949219.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|297576879|gb|EFH95594.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|312439051|gb|ADQ78122.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193893|gb|EFU24287.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00] Length = 466 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 177/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + ++P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQTVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|51595384|ref|YP_069575.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|186894407|ref|YP_001871519.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] gi|61216168|sp|Q66DK9|SYC_YERPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558803|sp|B2K7N2|SYC_YERPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|51588666|emb|CAH20275.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|186697433|gb|ACC88062.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] Length = 461 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGIEVCKEHL----- 401 + +D NT A L +ARE KN D+ + A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNDLGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|170025371|ref|YP_001721876.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] gi|229558805|sp|B1JHJ1|SYC_YERPY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169751905|gb|ACA69423.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] Length = 461 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 264/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGI-IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + G+ + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGVEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGIEVCKEHL----- 401 + +D NT A L +ARE KN D+ + A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKDWALADAARDQLNDLGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|304381872|ref|ZP_07364519.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304339658|gb|EFM05605.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 466 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 177/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +D++ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDIVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|307822084|ref|ZP_07652316.1| cysteinyl-tRNA synthetase [Methylobacter tundripaludum SV96] gi|307736650|gb|EFO07495.1| cysteinyl-tRNA synthetase [Methylobacter tundripaludum SV96] Length = 492 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 191/482 (39%), Positives = 271/482 (56%), Gaps = 47/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK FQ + MYVCG TVYD+ HIG+AR M+VFD + R R+ E Sbjct: 32 LKIYNTLTRKKEPFQPRVAGKVGMYVCGMTVYDYCHIGHARVMVVFDTVARYFRHQGYE- 90 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA I + +T + +D LA L P +PR Sbjct: 91 -LTYVRNITDIDDKIIQRA------IENGEDYGKLTERFIDAMHEDERALAVLPPDLEPR 143 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +I +I+ ++ AY +N ++ + + +YG S + +D+ + G RV Sbjct: 144 ATQSIADIISMIKTLVDKDLAYVGSNGDVFYAVTKFKDYGRLSGKNLDDLQAGERVDVDL 203 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK + EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG+DL FP Sbjct: 204 AKRNPMDFVLWKMAKANEPAWDSPWGLGRPGWHIECSAMSTCCLGNHFDIHGGGMDLQFP 263 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A EK N+W+HNGF+ ++ KMSKS GNF T+ E+L K Sbjct: 264 HHENEIAQSEGATG-EKFVNVWMHNGFVRVDDEKMSKSLGNFFTVREVLNQYK------- 315 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVLS----A 354 +IR +L +HYR P++++ ++L +A+ L++ +T++ I+ A + A Sbjct: 316 PEIIRFFILSSHYRSPLNYSDEQLNDAKAALTRLYTALRGVETTAEAAIEEAYKTRFEQA 375 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI--EVCKEHLNKN 404 + +D NT A+ L LAR+ K + L + +LGI + L + Sbjct: 376 MDDDFNTPVALAVLFDLARDLNKAKELDQQKACALAATLKYLSGLLGILQDDPDAFLKGS 435 Query: 405 ISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 A +E+ +Q RL K K ++ AD IR L+ +G ILED +PD T W+ Sbjct: 436 GDAAVLGEETVEQQIQARLDAKKAKDWALADKIRNDLKEQGVILED--SPDG---TTSWR 490 Query: 459 QK 460 ++ Sbjct: 491 RE 492 >gi|257470811|ref|ZP_05634901.1| cysteinyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|317065015|ref|ZP_07929500.1| cysteinyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|313690691|gb|EFS27526.1| cysteinyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] Length = 473 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 192/483 (39%), Positives = 272/483 (56%), Gaps = 57/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL K+ EF+ + + MYVCGPTVY++ HIGNARP I FD + R Y G K Sbjct: 2 IKIYNTLSGKVDEFKPVREGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL-APTHQP 123 V YV+N TD+DDK+I RA +E S+ I K + + +DT+++ A +P Sbjct: 61 -VKYVQNFTDVDDKMIRRANEEGVSLKD------IAEKYIKAYFEDTSKVNLKEAGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI +IQN+I G+AYEA ++ F+ + YG+ S++ +D+ K G R+ Sbjct: 114 KATEHIGDMIEIIQNLIEKGYAYEAEGDVYFNVEKYKDGYGALSKQNVDDLKSGARIEVA 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP WESPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 174 DIKKSPVDFALWKAAKEGEPSWESPWGKGRPGWHIECSAMSHRYLGDTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ E A W+HNG++N+ G KMSKS G F+ + ++L+ +F GR Sbjct: 234 PHHENEIAQSKCSCGGE-FARYWMHNGYININGEKMSKS-GTFMLLRQVLD--QFEGR-- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------TSTSKGIIDPAVL 352 VIRL +L HYR+P+DF+ L +A+ L + T + D A L Sbjct: 288 ---VIRLFILGAHYRKPMDFSNYELNQAKSSLERIENALLRAKDALAADTKEDGADCAEL 344 Query: 353 ------------SALYNDLNTVSAIQALHKLARESTK--NHDLLP-------------IF 385 +A+ +D NT + A+ +L +E K D L + Sbjct: 345 AEVLKSSSEKFVTAMDDDFNTAQGLGAIFELIKELNKALEEDKLSAKGKETVKETVDYVV 404 Query: 386 NASAHILGIEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N +LG+ + ++ N+ S +E +++ R K ++ +D IR +L G ++D Sbjct: 405 NIMQEVLGVILKLDNEVGNLTSELVEFILELRREARADKNWAMSDKIRDRLAEIGIKIKD 464 Query: 445 YKN 447 K+ Sbjct: 465 GKD 467 >gi|152989578|ref|YP_001348862.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PA7] gi|187629850|sp|A6V727|SYC_PSEA7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150964736|gb|ABR86761.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PA7] Length = 460 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 262/483 (54%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGRFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 V+R ++ +HYR PI+++ + L EA+ L ++ + KG+ + A + Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRF--YNALKGLPEAAPAEAAEHVERFAA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNASAHILGIE 395 A+ +D NT A L +LARE + D LL + ++ Sbjct: 344 AMDDDFNTAGACSVLFELAREVNRLRDSDLPAAAALAARLKQLAGLLGVLQLEPEAF-LQ 402 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 E K + +E L+Q RL K ++ +D IR QL + G +LED G+ T Sbjct: 403 AGAE--GKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLED------GKGGT 454 Query: 456 RWK 458 W+ Sbjct: 455 TWR 457 >gi|314937165|ref|ZP_07844512.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] gi|313655784|gb|EFS19529.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] Length = 466 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 260/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEAFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--KGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ + S+P I + + F +D L T PR Sbjct: 60 TVDYVSNFTDVDDKLINRSKELNESVPE------IADRYIKAFYEDVGALNVKRATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKQLVDDGYAYESNGDVYFRTRQFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G+GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGQGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGIID-- 348 V+R M+ HYR PI++ V+ + A+ L + + T ID Sbjct: 286 DVLRFFMISVHYRSPINYNVELVNAAKSGLERIRNSYQLIKEREAIATDLETQTDYIDQI 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLAR----ESTKNHDLL----PIFNASAHILG 393 AV+ +N N V+A L KLA E+T + ++ ++ + +LG Sbjct: 346 NDILKQFEAVMDDDFNTANAVTAWYDLSKLANKYVLENTTSTKVIQRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLEGKENDVLLDEDIEKLIEERNEARKNKDFARADEIRDTLKEQNIILED 456 >gi|261868784|ref|YP_003256706.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414116|gb|ACX83487.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 469 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 190/481 (39%), Positives = 272/481 (56%), Gaps = 48/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 12 LKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYD- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 71 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVVEMYKDFDALNILRPDFEPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I ++Q +I GHAY A+N +++FD S +YG SR+ +++ + G R+ Sbjct: 124 ATHHIPEIIDIVQKLIQRGHAYVADNGDVMFDVESFKDYGKLSRQDLEQLQAGARIEINE 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 184 IKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDLMFP 243 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 244 HHENEIAQSCCA-HGNQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYD 295 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTS------KGIIDPAVLS 353 A +R +L HYR ++++ + L A E L + T S + +D A Sbjct: 296 AESVRYFLLTAHYRSQLNYSEENLNLAHGALERLYTALRGTDKSAVAFGGENFVD-AFRE 354 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT +A+ L ++ARE K + L A ILG+ + + Sbjct: 355 AMDDDFNTPNALSVLFEMARELNKLKTEDMAKANGLAARLRELAAILGLLQLDPEQFLQA 414 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +++ IE L+++R K +++AD R L G ILED G T W++ Sbjct: 415 GSDEDEVAKIEALIKQRNESRATKDWAAADAARNALTEMGIILED------GPNGTTWRK 468 Query: 460 K 460 + Sbjct: 469 Q 469 >gi|188026279|ref|ZP_02961521.2| hypothetical protein PROSTU_03559 [Providencia stuartii ATCC 25827] gi|188022312|gb|EDU60352.1| hypothetical protein PROSTU_03559 [Providencia stuartii ATCC 25827] Length = 494 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 266/483 (55%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I P I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 34 LQIFNTLSRQKEEFKPIHPGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 92 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + N+ + +T++ + KD L L P +PR Sbjct: 93 -LNYVRNVTDIDDKIIKRAAEN------NETVDSLTTRMLAEMHKDFDALNILRPDSEPR 145 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + +I GHAY A+N +++F+ + NYG SR+ +++ + G RV Sbjct: 146 ATQHIDEIIEITDLLIKRGHAYVADNGDVMFEVKTDKNYGQLSRQDLEQLQAGARVEVAD 205 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 206 SKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKALGNHFDIHGGGSDLMFP 265 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE + Sbjct: 266 HHENEIAQSSCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLEY-------YD 317 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 +R +L HYR +++T + L +A L + + + + PA A Sbjct: 318 PETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDKSVAPAGGEIFKKRFEDA 377 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI--EVCKEHLNKN 404 + +D NT A L +ARE + ++L A +LG+ + + L N Sbjct: 378 MNDDFNTPEAYSVLFDMAREINRLKSENKVAANELASELRKLAGVLGLLEQDPEAFLQGN 437 Query: 405 IS-------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 IE L+++R K K+++ AD R +L + G +LED G + T W Sbjct: 438 AQGEGDEEVAKIEALIKQRNNARKNKEWALADAARDELTAMGIVLED------GAQGTTW 491 Query: 458 KQK 460 ++K Sbjct: 492 RRK 494 >gi|15926207|ref|NP_373740.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|148266989|ref|YP_001245932.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|150393036|ref|YP_001315711.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156978858|ref|YP_001441117.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|253315639|ref|ZP_04838852.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005323|ref|ZP_05143924.2| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269202152|ref|YP_003281421.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|295406906|ref|ZP_06816709.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8819] gi|296275775|ref|ZP_06858282.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1] gi|297246270|ref|ZP_06930119.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8796] gi|21264022|sp|Q99W73|SYC_STAAN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56749452|sp|Q932G0|SYC_STAAM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171769940|sp|A7WYU7|SYC_STAA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082076|sp|A6TZ06|SYC_STAA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082077|sp|A5IQ83|SYC_STAA9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13700420|dbj|BAB41718.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|46395518|dbj|BAB56692.2| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|147740058|gb|ABQ48356.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|149945488|gb|ABR51424.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156720993|dbj|BAF77410.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|262074442|gb|ACY10415.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|285816229|gb|ADC36716.1| Cysteinyl-tRNA synthetase [Staphylococcus aureus 04-02981] gi|294968137|gb|EFG44163.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8819] gi|297176868|gb|EFH36126.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8796] gi|312829025|emb|CBX33867.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128822|gb|EFT84821.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03] gi|329727911|gb|EGG64360.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172] Length = 466 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|329767862|ref|ZP_08259376.1| cysteinyl-tRNA synthetase [Gemella haemolysans M341] gi|328838650|gb|EGF88249.1| cysteinyl-tRNA synthetase [Gemella haemolysans M341] Length = 465 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 183/487 (37%), Positives = 270/487 (55%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + +RMYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVRMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E S S +T K F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEEGIST------SELTDKYINAFFKDYDALGCKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I ++ G AYEA+ ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIIKFIAKLVEEGFAYEADGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W+SP+G GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWDSPFGEGRPGWHIECSVMAKETLGETIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHA-SFSNYWMHNAFINIDNVKMSKSLGNFRLVKDII-------AEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLSA 354 V+RL ML HYR PI++T++ + A+ K + ++ +D V++ Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELAKTNFEKIKTSYQNLQFRLNNEMTEEKLDTEVVTL 345 Query: 355 -----------LYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHIL 392 + +D NT +A+ + +++ R + T N + L + NA+ + IL Sbjct: 346 VTEELDKFEEYMQDDFNTANALSSWYEIVRISNSYTAKETVNKETLELINAAFETYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V ++ N S IE L+ ER K + F+ AD IR L+ +G ILED K Sbjct: 406 GINVKED--NTLDSEHIESLIAEREAARKNRDFALADKIRDDLKEQGIILEDTK------ 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKK 464 >gi|189423475|ref|YP_001950652.1| cysteinyl-tRNA synthetase [Geobacter lovleyi SZ] gi|229558717|sp|B3E1P0|SYC_GEOLS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189419734|gb|ACD94132.1| cysteinyl-tRNA synthetase [Geobacter lovleyi SZ] Length = 487 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 202/508 (39%), Positives = 264/508 (51%), Gaps = 75/508 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + F + MYVCG TVYDF HIG+AR IVFD++YR LR+ + Sbjct: 3 LRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RN TDIDDKII RA QE I + F +D RL L PT +P+ Sbjct: 62 -VTYIRNYTDIDDKIINRANQEGTDY------RTIADRYIATFDEDMDRLGMLRPTIEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI +I +IQ +I +GHAY + ++ F + P Y S R +D+ G RV Sbjct: 115 ATDHIEDIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK S P EP WESPWG+GRPGWHIECSAMS +LG FDIHGGG DL+FPH Sbjct: 175 KRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + W+HNGF+N+ KMSKS GNF TI E+LE + Sbjct: 235 HENEIAQSEGANGCQ-FVKYWLHNGFVNINSEKMSKSLGNFFTIREVLEL-------FDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------WPQTSTS- 343 +R +L HYR P+D++ Q L EA+ LS+ P ++ Sbjct: 287 ETLRFFILQAHYRSPLDYSDQNLREAQAGLSRIYEALAALDQALEKPATAIHLPASAAEF 346 Query: 344 ----KGIIDPAVLSALYNDLNTVSA-------IQALHKLARE-----STKNHDLLPIFNA 387 G++ P A+ +D NT A I+ L++L E S DL + A Sbjct: 347 AEKVAGLL-PRFREAMDDDFNTAQALGTLFDSIRTLNRLLAEGGGSSSASRADLEQLRAA 405 Query: 388 SAHI---LGIEVCK---------EHLNKNISIA---IEKLVQERLILLKMKKFSSADYIR 432 I LG+ K +++ I+ IE L+ ER K K F +D IR Sbjct: 406 VTEIGAVLGLFRIKPSDWLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDEIR 465 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQK 460 L S+ L D P T WK K Sbjct: 466 DYLLSRDIQLVD--TPQG----TAWKVK 487 >gi|22125011|ref|NP_668434.1| cysteinyl-tRNA synthetase [Yersinia pestis KIM 10] gi|45440695|ref|NP_992234.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] gi|21957858|gb|AAM84685.1|AE013714_1 cysteine tRNA synthetase [Yersinia pestis KIM 10] gi|45435553|gb|AAS61111.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] Length = 476 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 17 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 75 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 129 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 188 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 189 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 248 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 249 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 300 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 301 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 360 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGIEVCKEHL----- 401 + +D NT A L +ARE KN D+ + A +LG+ L Sbjct: 361 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 420 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 421 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNELGIVLED------GPQGTTWR 474 Query: 459 QK 460 +K Sbjct: 475 RK 476 >gi|108808560|ref|YP_652476.1| cysteinyl-tRNA synthetase [Yersinia pestis Antiqua] gi|108811182|ref|YP_646949.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|145599972|ref|YP_001164048.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|149365066|ref|ZP_01887101.1| cysteinyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|153947472|ref|YP_001401974.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] gi|162421370|ref|YP_001605813.1| cysteinyl-tRNA synthetase [Yersinia pestis Angola] gi|165927660|ref|ZP_02223492.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|166011255|ref|ZP_02232153.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166214354|ref|ZP_02240389.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398585|ref|ZP_02304109.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422736|ref|ZP_02314489.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423331|ref|ZP_02315084.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930118|ref|YP_002347993.1| cysteinyl-tRNA synthetase [Yersinia pestis CO92] gi|229838673|ref|ZP_04458832.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896170|ref|ZP_04511340.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|229899240|ref|ZP_04514383.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229901410|ref|ZP_04516532.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|270489600|ref|ZP_06206674.1| cysteine--tRNA ligase [Yersinia pestis KIM D27] gi|294504817|ref|YP_003568879.1| cysteinyl-tRNA synthetase [Yersinia pestis Z176003] gi|21264007|sp|Q8ZCC0|SYC_YERPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123073499|sp|Q1CKY1|SYC_YERPN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123372235|sp|Q1C4U1|SYC_YERPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187470969|sp|A7FL46|SYC_YERP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187470970|sp|A4TP63|SYC_YERPP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558804|sp|A9R253|SYC_YERPG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|108774830|gb|ABG17349.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|108780473|gb|ABG14531.1| cysteinyl-tRNA synthetase [Yersinia pestis Antiqua] gi|115348729|emb|CAL21675.1| cysteinyl-tRNA synthetase [Yersinia pestis CO92] gi|145211668|gb|ABP41075.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|149291479|gb|EDM41553.1| cysteinyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|152958967|gb|ABS46428.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] gi|162354185|gb|ABX88133.1| cysteinyl-tRNA synthetase [Yersinia pestis Angola] gi|165920414|gb|EDR37691.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989933|gb|EDR42234.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204483|gb|EDR48963.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|166958327|gb|EDR55348.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051089|gb|EDR62497.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057501|gb|EDR67247.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681339|gb|EEO77433.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|229687642|gb|EEO79715.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229695039|gb|EEO85086.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701093|gb|EEO89122.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|262362880|gb|ACY59601.1| cysteinyl-tRNA synthetase [Yersinia pestis D106004] gi|262366803|gb|ACY63360.1| cysteinyl-tRNA synthetase [Yersinia pestis D182038] gi|270338104|gb|EFA48881.1| cysteine--tRNA ligase [Yersinia pestis KIM D27] gi|294355276|gb|ADE65617.1| cysteinyl-tRNA synthetase [Yersinia pestis Z176003] Length = 461 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGIEVCKEHL----- 401 + +D NT A L +ARE KN D+ + A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|312961737|ref|ZP_07776235.1| Cysteinyl-tRNA synthetase [Pseudomonas fluorescens WH6] gi|311283996|gb|EFQ62579.1| Cysteinyl-tRNA synthetase [Pseudomonas fluorescens WH6] Length = 462 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 182/478 (38%), Positives = 262/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + +A +T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEAFDALTERMIAAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGTKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALY 356 V+R ++ +HYR I+++ L +A+ L ++ P + + G A + + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPAVAPAGGEAFVARFTEVM 345 Query: 357 N-DLNTVSAIQALHKLARESTKNHDLLPI--------FNASAHILGI------EVCKEHL 401 N D T A L ++ RE + + A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLDAAAGLAARLKELASVLGVLQMEADDFLQAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR QL + G +LED G+ T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARTNKDWAESDRIRDQLTAMGVVLED------GKGGTTWR 457 >gi|319941120|ref|ZP_08015456.1| cysteinyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] gi|319805477|gb|EFW02279.1| cysteinyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] Length = 468 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 199/488 (40%), Positives = 270/488 (55%), Gaps = 55/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY+TL R+ F++++P +RMYVCG TVYD+ HIG+ R + FDV+ R L G K Sbjct: 2 LSIYSTLTREQRPFESLEPGRVRMYVCGVTVYDYCHIGHGRTFVAFDVVRRWLEAS-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK----DTTRLACLAPT 120 VT+VRNITD+DDKII RA + + T + T +F + D L CLAPT Sbjct: 61 -VTFVRNITDVDDKIIRRAAER----------GVTTDELTDEFARAMQEDMLALGCLAPT 109 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +PRAT +IPQM+ LI + G AY A+ ++ + PNYG S + ID+ + G RV Sbjct: 110 FEPRATQYIPQMLNLIGKLEEKGFAYHAADGDVDYAVRKFPNYGRLSGKSIDDLQSGARV 169 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K +P DF+LWK + P EP W+S WG GRPGWHIECSAM+ LG+ DIHGGG D Sbjct: 170 QEREGKHDPLDFVLWKSAKPGEPQWDSKWGCGRPGWHIECSAMAMDLLGETIDIHGGGPD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL---EGR--KMSKSNGNFITINELL-E 293 L+FPHHENEIAQS A + A W+H+G L + +G+ KMSKS GNF TI + L E Sbjct: 230 LVFPHHENEIAQSEAATG-HQFARTWMHSGPLRVRSADGKEEKMSKSLGNFWTIRDALKE 288 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL- 352 T G A V+R +L + YR PI F+ + EA L + T+ D A L Sbjct: 289 TNAAYGEGCGAEVLRFFLLRSQYRSPITFSSVLIEEAHKALVRL-YTALKGRAADRAALD 347 Query: 353 ----------SALYNDLNTVSAIQALHKLARESTKN------HDLLPIFNASAHILGIEV 396 +A+ +D NT A+ L +LA E + LL + +ILG+E Sbjct: 348 WNEPFAARFKAAMDDDFNTALAVSVLFELATEINRTGSPALVRQLLGL-GRILNILGMEP 406 Query: 397 CKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 K L + IE L++ER + K K F+ AD IRK L ++G L+D G Sbjct: 407 EK-FLQGGAEASDDASRIEGLIEERALAKKAKNFARADEIRKSLLAEGIELQD------G 459 Query: 452 QRMTRWKQ 459 T W++ Sbjct: 460 AAGTTWRR 467 >gi|213968819|ref|ZP_03396960.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] gi|213926422|gb|EEB59976.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] Length = 466 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 256/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 8 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 67 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 120 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 179 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 180 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 239 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF T+ ++LE + Sbjct: 240 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTLRDVLE-------KYH 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ +PA +A+ Sbjct: 292 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAAEPAGGEAFVERFTTAM 351 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 352 NDDFGTPEACAVLFEMVREINRLRETDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 411 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR Q+ + G +LED K Sbjct: 412 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGKG 458 >gi|304319902|ref|YP_003853545.1| cysteinyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] gi|303298805|gb|ADM08404.1| cysteinyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] Length = 457 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 253/476 (53%), Gaps = 39/476 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + Y+T + F DP I +Y CGPTVY HIGNAR + D++ RLL+ YG Sbjct: 2 SLSFYDTFRGHVEPFTPADPERITVYCCGPTVYAPPHIGNARAALTADLVVRLLKDRYGA 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V + RN TDIDDKII A+ E +PI+ ++T++ T +++ L CL P P Sbjct: 62 EKVIFARNFTDIDDKIIAAAKDE--GVPID----VVTARATAAYLEGLDGLFCLRPDVAP 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI M LI +++ GHAY A I+FDT S P YG SR + G RV Sbjct: 116 RATAHIDSMQALIGSLLERGHAYGAEGHILFDTQSFPAYGQLSRLDREAILAGARVEIAP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESP--W---GRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 +K++ ADF+LWK S PGW P W G GRPGWHIECSAM + LG DIH GG Sbjct: 176 YKRDAADFVLWKPSPAEVPGWPVPASWPIDGEGRPGWHIECSAMIASVLGPSIDIHLGGQ 235 Query: 239 DLIFPHHENEIAQSCCADRIEKT--ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQSCC +T A W+HNG L G KMSKS GN T +LL Sbjct: 236 DLRFPHHENEIAQSCCGTDTGETPLARYWLHNGMLRFGGEKMSKSRGNIETPQDLLA--- 292 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDPAVLS 353 +WP IRLA++ YR+P+D++ + L ++ L ++ + +K + V++ Sbjct: 293 ----AWPGEAIRLALMSAQYRQPLDWSNELLAGSKAQLDRFYRVVPDGPAKAAMPDWVMA 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGI--EVCKEHLNKNISIA- 408 AL +DLNT A+ +H+L RE+ D+ A+ LG + E + Sbjct: 349 ALEDDLNTPKALAMMHEL-REAAGRGDIEAAHGLKAAGAFLGFFRQTADEWFRGATADGP 407 Query: 409 ----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 I+ + R K ++ AD IR +L ++G +LED G W+++ Sbjct: 408 TESDIDAQIAARQAAKTAKNWAEADRIRDELGAQGIVLED------GPEGVTWRRR 457 >gi|308179697|ref|YP_003923825.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045188|gb|ADN97731.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 470 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 182/479 (37%), Positives = 264/479 (55%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T Sbjct: 57 CGYHVDYVSNFTDVDDKLIKRAAEDHTTVPA------VADRFIKAFMEDTTAVNIEPATV 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----T 177 PRA+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G T Sbjct: 111 HPRASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHT 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K++P DF LWK + P E W+SPWG GRPGWHIECS MS+ YLG FDIHGGG Sbjct: 171 ADEETDRKEDPIDFALWKAAKPGEISWKSPWGAGRPGWHIECSVMSTKYLGDTFDIHGGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 DL FPHHENEIAQS + KT AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 231 QDLEFPHHENEIAQSEA--KTGKTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKT 288 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGI 346 V+R M T YR PI +T L EA L K + Sbjct: 289 VD-------PQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNG 341 Query: 347 IDPAVL-----------SALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNA 387 D AV +A+ +D N + + A+++LA+ + + L+ + A Sbjct: 342 TDTAVAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAQATVQKETLIALQKA 401 Query: 388 SAHILGI-EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + G+ V E N ++ AI+ L+ ER K K F+ AD IR L+++G ILED Sbjct: 402 LVQLTGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKAQGIILED 460 >gi|167855009|ref|ZP_02477783.1| cysteinyl-tRNA synthetase [Haemophilus parasuis 29755] gi|167853857|gb|EDS25097.1| cysteinyl-tRNA synthetase [Haemophilus parasuis 29755] Length = 459 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 183/480 (38%), Positives = 258/480 (53%), Gaps = 48/480 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KIYNTL+R+ EF+ I P ++ MYVCG TVYD H G+ R + FDV+ R LRY Y Sbjct: 2 LKIYNTLKREKEEFKPIYPDHVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + YVRNITD+DDKII+R S+ N+ + + + KD L L P +P Sbjct: 61 --LRYVRNITDVDDKIIKR------SLENNETCDQLVDRMIIEMHKDFDALNILRPDVEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT HIP++I +++ ++ GHAY A + +++F+ S YG+ SR+ +++ + G RV K Sbjct: 113 RATQHIPEIIAIVEKLLAKGHAYVAEDGDVMFNVESFQKYGALSRQNLEQLQAGARVEIK 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EP W+SPWG+GRPGWHIECSAM+S LG FDIHGGG DL+F Sbjct: 173 SVKRNPMDFVLWKMSKENEPSWDSPWGKGRPGWHIECSAMNSKELGNHFDIHGGGSDLMF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + N W+H G L + KMSKS NF TI ++L + Sbjct: 233 PHHENEIAQSCCA-HGDDYVNYWLHTGMLTINEEKMSKSLNNFFTIRDIL-------NKY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAVLS 353 +R L YR +D++ + + A L + W A Sbjct: 285 DCESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCDWNVELAENDQYVTAFKE 344 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI------EVCKE 399 ++ +D NT A+ L +LARE K + L A +LG+ + Sbjct: 345 SMDDDFNTPGALAVLFELAREINKLKAENQVEANKLAARLKQLAGVLGLLEQDPETFLQG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+++R K ++ AD R +L + G +LED G T W++ Sbjct: 405 DANNDEVAEIEALIKQRNEARASKNWAVADEARNKLTAMGIVLED------GANGTTWRK 458 >gi|323439800|gb|EGA97517.1| cysteinyl-tRNA synthetase [Staphylococcus aureus O11] Length = 466 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKSGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K FS AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKKKDFSRADEIRDMLKSQNIILED 456 >gi|94499488|ref|ZP_01306025.1| cysteinyl-tRNA synthetase [Oceanobacter sp. RED65] gi|94428242|gb|EAT13215.1| cysteinyl-tRNA synthetase [Oceanobacter sp. RED65] Length = 460 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 186/466 (39%), Positives = 261/466 (56%), Gaps = 40/466 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ + P I MYVCG TVYDF H+G+AR M+ FDV+ R LR+ + Sbjct: 3 LQIYNTLSRQKEEFKPLQPGKIGMYVCGMTVYDFCHMGHARVMVSFDVIVRYLRHKGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII+RA + P + + + F K L L P +PR Sbjct: 62 -VNYIRNITDIDDKIIQRAAENGE--PFEQLVDRMVDAMNEDFAK----LNILTPNSEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I +++ +I G AY A N ++ + YG S + ++E + G R+ + Sbjct: 115 ATQHIDGIIKMVETLIEKGFAYAAKNGDVYYRVRKFDGYGKLSGKILEELESGARIAVEE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 175 EKEDPLDFVLWKSAKPEEPSWDSPWGQGRPGWHIECSVMSTCCLGNNFDIHGGGPDLKFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E AN W+H G L ++G KMSKS GNF TI ++LE + Sbjct: 235 HHENEIAQSEAATG-EHYANTWMHAGALRIDGEKMSKSLGNFFTIRDILE-------KYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDP--AVL------ 352 A VIR + YR I+++ L +AE L + +ID AV+ Sbjct: 287 AEVIRFFLSSVQYRSAINYSEDGLKDAEAKLDRLYNAIHGCDLSAVIDEQDAVVQDTRER 346 Query: 353 --SALYNDLNTVSAIQALHKLA-----RESTKNHDLLPIFNASAHILGIEVC--KEHLNK 403 +A+ +D NT AI L L +E + + L + + ILG +L + Sbjct: 347 FEAAMDDDFNTPKAIAVLFDLVNEINKKEGAEKNPLAALLVELSSILGCLQSDPDNYLQR 406 Query: 404 NISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +++ I+ +QER K K F+ AD IR+ L+++G IL+D + Sbjct: 407 GVTLDDAYIQGKIQERAQAKKDKDFALADKIREDLDAQGIILQDSR 452 >gi|260768877|ref|ZP_05877811.1| cysteinyl-tRNA synthetase [Vibrio furnissii CIP 102972] gi|260616907|gb|EEX42092.1| cysteinyl-tRNA synthetase [Vibrio furnissii CIP 102972] gi|315180571|gb|ADT87485.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Vibrio furnissii NCTC 11218] Length = 460 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 184/481 (38%), Positives = 263/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + S +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENQESC------ESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L+Q +I G AY A+N +++F+ + +YG S++ +D+ + G RV Sbjct: 114 ATAYIQEIIELVQRLIDRGFAYVADNGDVMFEVNKFDDYGKLSKQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQ-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDMTVPAAGGEEYLTRFTTA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE + K L + A ++GI K Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTEDTDKASALGALMRELADVIGILYQDPEAFLKGD 405 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +A IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLNEMGIVLED------GPSGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|317047240|ref|YP_004114888.1| cysteinyl-tRNA synthetase [Pantoea sp. At-9b] gi|316948857|gb|ADU68332.1| cysteinyl-tRNA synthetase [Pantoea sp. At-9b] Length = 461 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY G K Sbjct: 2 LKIYNTLTRQKEEFKPIHAGEIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYV-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESIETLTNRMIGEMHKDFAALGILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+ +I GHAY A+N +++FD S +YG SR+ +++ + G RV Sbjct: 114 ATRHIDEIIELVGRLIERGHAYVADNGDVMFDVLSDKDYGVLSRQDLEQLQAGARVEVAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPAWNSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 234 HHENEVAQSTCA-HDGPYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR +++ L +A L + + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDVSAVAAGGEEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI--------EVCK 398 + +D NT A L +ARE T L A +LGI Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDKTAADALAAKLRQLAEVLGILQQDPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L++ R + K ++ AD R +L + G +LED G + T W+ Sbjct: 406 AQANDDEVAEIEALIKMRNDARQAKDWAQADVARDKLNALGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|228475261|ref|ZP_04059986.1| cysteine--tRNA ligase [Staphylococcus hominis SK119] gi|228270726|gb|EEK12135.1| cysteine--tRNA ligase [Staphylococcus hominis SK119] Length = 466 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/471 (37%), Positives = 260/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEAFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--KGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ + S+P I + + F +D L T PR Sbjct: 60 TVDYVSNFTDVDDKLINRSKELNESVPE------IADRYIKAFYEDVGALNVKRATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIEFIKQLVDDGYAYESNGDVYFRTRQFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G+GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGQGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGIID-- 348 V+R M+ HYR PI++ ++ + A+ L + + T ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVNAAKSGLERIRNSYQLIKEREAIATDLETQTDYIDQI 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLAR----ESTKNHDLL----PIFNASAHILG 393 AV+ +N N V+A L KLA E+T + ++ ++ + +LG Sbjct: 346 NDILKQFEAVMDDDFNTANAVTAWYDLSKLANKYVLENTTSTQVIQRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLEGKENDVLLDEDIEKLIEERNEARKNKDFARADEIRDTLKEQNIILED 456 >gi|28870897|ref|NP_793516.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|301384135|ref|ZP_07232553.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13] gi|302059502|ref|ZP_07251043.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40] gi|302134322|ref|ZP_07260312.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999386|sp|Q87YQ2|SYC_PSESM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28854146|gb|AAO57211.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|331018326|gb|EGH98382.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 460 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 256/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF T+ ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTLRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAAEPAGGEAFVERFTTAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + D+ A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRETDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR Q+ + G +LED K Sbjct: 406 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGKG 452 >gi|123443257|ref|YP_001007231.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|187470968|sp|A1JNP9|SYC_YERE8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|122090218|emb|CAL13084.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 461 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRALEN------NETCEQLTTRMLVEMHKDFDALNLKRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY AN +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIALTERLIARNHAYVAANGDVMFSVESDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE T + L A++LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDITAANALAAELRKLAYVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDDDEVAKIEVLIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|269940102|emb|CBI48478.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20] Length = 466 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N+ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIGNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|56418620|ref|YP_145938.1| cysteinyl-tRNA synthetase [Geobacillus kaustophilus HTA426] gi|261417586|ref|YP_003251268.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|319765244|ref|YP_004130745.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC52] gi|61216117|sp|Q5L429|SYC_GEOKA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56378462|dbj|BAD74370.1| cysteinyl-tRNA synthetase [Geobacillus kaustophilus HTA426] gi|261374043|gb|ACX76786.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|317110110|gb|ADU92602.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC52] Length = 466 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 187/487 (38%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + + Sbjct: 4 IRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDK+I+ AR+ S+P I + + + +D L C PR Sbjct: 63 -VTYVSNFTDVDDKLIKAARELGESVPA------IAERFIEAYFEDIQALGCKKADIHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I IQ +I G+AYE + ++ + T YG S + IDE + G R+ Sbjct: 116 VTENIDTIIEFIQALIDKGYAYEVDGDVYYRTRKFREYGKLSHQSIDELQAGARIEIGEK 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 176 KDDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 236 HENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------REIDP 287 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSK---------- 344 V+R ML HYR PI+++ ++RL A L Q ST+ Sbjct: 288 QVLRFFMLSVHYRHPINYSEELLESARRGLERLKTAYSNLQHRLQASTNLTDNDEEWVSR 347 Query: 345 -GIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKN----HDLLPIFNASAHIL 392 I + + + +D NT + I L +LA+ E T + H L F A +L Sbjct: 348 IADIRASFIREMDDDFNTANGIAVLFELAKQANLYLQEKTTSEKVIHAFLREFEQLADVL 407 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + ++ L + IE L+Q+R K + F+ AD IR +L +K ILED P Sbjct: 408 GLTLKQDEL---LDEEIEALIQKRNEARKNRDFALADRIRDELRAKNIILED--TPQG-- 460 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 461 --TRWKR 465 >gi|262369707|ref|ZP_06063035.1| cysteinyl-tRNA synthetase [Acinetobacter johnsonii SH046] gi|262315775|gb|EEY96814.1| cysteinyl-tRNA synthetase [Acinetobacter johnsonii SH046] Length = 473 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 193/473 (40%), Positives = 269/473 (56%), Gaps = 51/473 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR V Sbjct: 6 LYNSEQRKKVEFVPRVEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ--GWSV 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII+RA + ++I+ +T + Q +D L CL P PRAT Sbjct: 64 KYVRNITDIDDKIIKRANEN------GESITQLTDRFIQAMNEDAENLGCLHPDEAPRAT 117 Query: 127 NHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 ++I QM +I N++ G AY AN ++ F YG S RK+++ + G RV + Sbjct: 118 DYIDQMQSMIGNLVEKGTAYPSANGDVYFQVEKFAKYGRLSGRKLEDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG+GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKDNEPAWASPWGKGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI ++++ + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVMD-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ LS++ + T +D +L Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALSRFYHSFKAYQQAYGDTQVDTLDETLLER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI--EVCKE 399 SA+ +D NT AI L ++ +E + + I+ A+ +ILG+ +E Sbjct: 350 FNSAMRDDFNTAEAIAVLFEVNKELNRAVKEQQAEQAAIYYATLRHLTNILGLVQHNVEE 409 Query: 400 HLNKNISI--------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L +I IE L+Q+R K K+F+ AD IR+ L +G +LED Sbjct: 410 FLKSDIGQEALALSEEQIEDLIQQRQDAKKAKEFAKADEIRQSLLDQGVVLED 462 >gi|56478148|ref|YP_159737.1| cysteinyl-tRNA synthetase [Aromatoleum aromaticum EbN1] gi|61216130|sp|Q5P1H8|SYC_AZOSE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56314191|emb|CAI08836.1| cysteinyl-tRNA synthetase [Aromatoleum aromaticum EbN1] Length = 461 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 186/467 (39%), Positives = 257/467 (55%), Gaps = 44/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL R+ F I P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR E Sbjct: 2 LHIHNTLTRRKEAFVPIAPGKVRMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA ++ ++I +T + +D L L P H+PR Sbjct: 61 -LTYVRNITDIDDKIIRRAGEK------GESIRTLTDRFIAAMHEDADALGVLRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ QM LI + G AY A N ++ + +YG FS + +DE + G RV Sbjct: 114 ATEYVMQMQSLIGRLRDKGLAYVAGNRDVCYSVRKFDSYGRFSGKSLDELRAGERVEVAG 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL Sbjct: 174 DKQDPLDFVLWKHARTDEPDEVKWASPWGAGRPGWHIECSAMSSDLLGEQFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++LE Sbjct: 234 QFPHHENEIAQSEGA-HGHTFVNYWMHNGFVRVDDEKMSKSLGNFFTIRDVLE------- 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID---PAVL- 352 + V+R +L HYR P++++ L +A L++ S +D P + Sbjct: 286 RFDPEVVRFFILRAHYRSPLNYSDAHLEDARQALTRLYTALRNVQPSDAQVDWDEPHAMR 345 Query: 353 --SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-------------AHILGIEVC 397 +A+ +D NT A+ L +LA E+ ++ A L + Sbjct: 346 FRAAMDDDFNTAEAVAVLFELANEANRSGSAATAAQLKGLGGVLGLLAREPASFLQGRMA 405 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E +K +AIE +++ R + K K ++ AD IR QL + G +LED Sbjct: 406 GE-PDKGEGVAIESMIERRALAKKSKDYAEADRIRAQLLASGIVLED 451 >gi|326523811|dbj|BAJ93076.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 573 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 194/511 (37%), Positives = 271/511 (53%), Gaps = 80/511 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + + +YNT R+ F+ P + MYVCG T YD +HIG+AR + FDVL+R LRY Sbjct: 72 RDMHLYNTRSRRREPFRPRAPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLFRYLRYLD 131 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 132 YE--VRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRYSDDFLSDMAHLQCLPPSV 183 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI Q++ +I+ II +G AY + ++ F + P Y S RK+D+ + G RV Sbjct: 184 EPRVSDHIDQIVTMIKQIIDNGCAYVVSGDVYFSVDNFPEYRKLSGRKLDDNRAGERVAV 243 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+ YLG FDIHGGG DLI Sbjct: 244 DERKKNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAQYLGNSFDIHGGGEDLI 303 Query: 242 FPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS CC + + N W+HNGF+N+ G+KMSKS GNFITI +++E Sbjct: 304 FPHHENEIAQSRAACC----DSSINYWVHNGFVNVNGQKMSKSLGNFITIRKVIEL---- 355 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGII 347 + +R+ +L THYR PI++TV++L A L QT +S G Sbjct: 356 ---YHPLALRMFLLGTHYRSPINYTVEQLNVASDRLYYTYQTLRDSEESTQQDQSSSGDS 412 Query: 348 DPAVL------------SALYNDLNTVSAIQA-----------------------LHKLA 372 P +++ +DL+T A+ A L LA Sbjct: 413 LPFTTTHCIEKLHEDFETSMSDDLHTSVALAAVSEPLKVMNDLLHTRKGKKQEKRLESLA 472 Query: 373 RESTKNHDLLPIFN--ASAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFSS 427 K +L + S++ ++ + + + E+++Q ER K K+F Sbjct: 473 ALEEKVRMVLSVLGLMPSSYHEALQQLRGKALRRACVTEEQVLQKIEERTAARKAKQFGR 532 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +D IR +L + G L D PD T W+ Sbjct: 533 SDEIRDELAALGIALMD--GPDG----TAWR 557 >gi|83644974|ref|YP_433409.1| cysteinyl-tRNA synthetase [Hahella chejuensis KCTC 2396] gi|109894904|sp|Q2SK40|SYC_HAHCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83633017|gb|ABC28984.1| cysteinyl-tRNA synthetase [Hahella chejuensis KCTC 2396] Length = 467 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 184/481 (38%), Positives = 269/481 (55%), Gaps = 48/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY++L ++ EF+ I + +YVCG TVYD+ H+G+AR ++ FD++ R LR + Sbjct: 2 LKIYSSLSQQKEEFKPIQAGKVGIYVCGMTVYDYCHLGHARVLVCFDIITRYLRAKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI+ RAR +++ +T++ +D L L+PT +PR Sbjct: 61 -VNYVRNITDVDDKILNRARDN------GESVDALTARFIDAMHEDERALGVLSPTSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +IQ ++ G+AY A+N ++ + +YG S++K+DE + G R+ Sbjct: 114 ATGHIDEIIAMIQRLMDKGYAYHASNGDVYYSVEQFADYGKLSKQKLDEIRAGARIEVDA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK + P E W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 EKRSPADFVLWKAAKPGELSWDSPWGEGRPGWHIECSAMSTRCLGDTFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A K N W+H G + + KMSKS GNF TI E+L+ +P Sbjct: 234 HHENEIAQSEAATGC-KYVNYWMHAGAVRVNKEKMSKSLGNFFTIREILD-------KYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGII---DPAVLS--- 353 A V+R + +HYR ID++ L EA E L + + G + +P V Sbjct: 286 AEVVRYFLASSHYRSAIDYSDVALEEARSGLERLYNSIRELYGELGAVSMDEPLVGEYRE 345 Query: 354 ----ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILG-IEVCKEH 400 A+ +D NT SA+ L +A+ + T+ L A +LG ++ E Sbjct: 346 RFHQAMDDDFNTSSAVAVLFDMAKAVNVAKKEDRTRALSLAKGMVDLAEVLGLLQADPES 405 Query: 401 LNK-------NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 L + +S+A IE + +R K F+ +D IR L+ KG +L D + + Q Sbjct: 406 LMQGEGEEVGGLSVAEIEDFIAQRNAARANKDFAESDRIRDLLKEKGVLLNDSREGTSWQ 465 Query: 453 R 453 R Sbjct: 466 R 466 >gi|291279235|ref|YP_003496070.1| cysteinyl-tRNA synthetase [Deferribacter desulfuricans SSM1] gi|290753937|dbj|BAI80314.1| cysteinyl-tRNA synthetase [Deferribacter desulfuricans SSM1] Length = 481 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 190/481 (39%), Positives = 264/481 (54%), Gaps = 63/481 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I+NTL K EF + + +RMYVCG TVYD+ HIG+AR +VFD++ R L Y E V Sbjct: 4 IFNTLTGKKEEFIPLQDNKVRMYVCGVTVYDYCHIGHARSSVVFDIIRRYL--IYKEYDV 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK----DTTRLACLAPTHQ 122 T+V+N TDIDDKII+R+ +E +I + T++F+K D +L + P Sbjct: 62 TFVKNFTDIDDKIIKRSNEE----------NIHWKELTEKFIKEHDYDMEKLNIMPPDFT 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT I +MI L + +I G+AY + ++ + +YG S+R +DE G RV Sbjct: 112 PKATEFIDEMIKLCEKLIEKGYAYVVDGDVYYRVEKFKDYGKLSKRNLDELLAGARVEVD 171 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK+S EP WESPWG+GRPGWHIECS MS+ LG FDIHGGG DLIF Sbjct: 172 ERKENPLDFALWKKSKENEPYWESPWGKGRPGWHIECSVMSAKLLGIPFDIHGGGKDLIF 231 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A+ + A WIHNGF+N+ KMSKS GNF TI E++ + + Sbjct: 232 PHHENEIAQSEAAEE-KMFAKYWIHNGFVNINKEKMSKSLGNFFTIREII-------KEF 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDPA-- 350 V+R +L THYR PIDF+ L EAE L++ + + K ++ A Sbjct: 284 DPEVLRFFLLTTHYRSPIDFSFDHLVEAEQSLNRIYTFLDDLEHYVVSKKGKNYLEEANK 343 Query: 351 --------VLSALYNDLNTVSAIQALHKLARESTK----------NHDLLPIFNASA--- 389 +++ +D N+ A+ A+ +E + ++L + N Sbjct: 344 IFENFKKEFETSMDDDFNSAKALAAIFDYIKEINRLLNQKVVKETYEEILKLTNNFKKIV 403 Query: 390 -HILGI--EVCKEHLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLESKGFILE 443 +LGI + KE N+ I+ +L ++ER K K F AD IR +LES G L Sbjct: 404 NQVLGIINKTPKEWFASNLPISESELIKKIEERTNARKNKNFELADKIRDELESLGIELL 463 Query: 444 D 444 D Sbjct: 464 D 464 >gi|28377486|ref|NP_784378.1| cysteine--tRNA ligase [Lactobacillus plantarum WCFS1] gi|38258341|sp|Q88YX9|SYC_LACPL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28270318|emb|CAD63219.1| cysteine--tRNA ligase [Lactobacillus plantarum WCFS1] Length = 470 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 185/479 (38%), Positives = 261/479 (54%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T Sbjct: 57 CGYHVDYVSNFTDVDDKLIKRAAEDHTTVPA------VADRFIKAFMEDTTAVNIEPATV 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----T 177 PRA+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G T Sbjct: 111 HPRASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHT 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K++P DF LWK + P E WESPWG GRPGWHIECS MS+ YLG FDIHGGG Sbjct: 171 ADEETDRKEDPIDFALWKAAKPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 DL FPHHENEIAQS + KT AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 231 QDLEFPHHENEIAQSEA--KTGKTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKT 288 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGI 346 V+R M T YR PI +T L EA L K + Sbjct: 289 VD-------PQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNG 341 Query: 347 IDPAVLSAL--------------YNDLNTVSAIQALHKL-----ARESTKNHDLLPIFNA 387 D AV L +N N V+A+ L KL A+ + + L+ + A Sbjct: 342 TDTAVAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAKATVQKETLIALQKA 401 Query: 388 SAHILGI-EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + G+ V E N ++ AI+ L+ ER K K F+ AD IR L+ +G +LED Sbjct: 402 LVQLTGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKVQGIMLED 460 >gi|116049743|ref|YP_791450.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] gi|296389817|ref|ZP_06879292.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PAb1] gi|122258854|sp|Q02KT6|SYC_PSEAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115584964|gb|ABJ10979.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] Length = 460 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 263/483 (54%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------DEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 V+R ++ +HYR PI+++ + L EA+ L ++ + KG+ + A + Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRF--YNALKGLPEAAPAEAAEYVERFAA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNASAHILGIE 395 A+ +D NT A L +LARE + + LL + ++ Sbjct: 344 AMDDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAF-LQ 402 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 E K + +E L+Q RL K ++ +D IR QL + G +LED G+ T Sbjct: 403 AGAE--GKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLED------GKGGT 454 Query: 456 RWK 458 W+ Sbjct: 455 TWR 457 >gi|323443098|gb|EGB00718.1| cysteinyl-tRNA synthetase [Staphylococcus aureus O46] Length = 466 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRIFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKSGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHV-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQSIILED 456 >gi|219870367|ref|YP_002474742.1| cysteinyl-tRNA synthetase [Haemophilus parasuis SH0165] gi|254781682|sp|B8F392|SYC_HAEPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219690571|gb|ACL31794.1| cysteinyl-tRNA synthetase [Haemophilus parasuis SH0165] Length = 459 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 182/480 (37%), Positives = 257/480 (53%), Gaps = 48/480 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KIYNTL+R+ EF+ I P ++ MYVCG TVYD H G+ R + FDV+ R LRY Y Sbjct: 2 LKIYNTLKREKEEFKPIHPDHVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + YVRNITD+DDKII+R S+ N+ + + + KD L L P +P Sbjct: 61 --LRYVRNITDVDDKIIKR------SLENNETCDQLVDRMIIEMHKDFDALNILRPDVEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT HIP++I +++ ++ GHAY A + +++F+ S YG+ SR+ +++ + G RV K Sbjct: 113 RATQHIPEIIAIVEKLLAKGHAYVAEDGDVMFNVESFQKYGALSRQNLEQLQAGARVEIK 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EP W+SPWG+GRPGWHIECSAM+S LG FDIHGGG DL+F Sbjct: 173 SVKRNPMDFVLWKMSKENEPSWDSPWGKGRPGWHIECSAMNSKELGNHFDIHGGGSDLMF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + N W+H G L + KMSKS NF TI ++L + Sbjct: 233 PHHENEIAQSCCA-HGDDYVNYWLHTGMLTINEEKMSKSLNNFFTIRDIL-------NKY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAVLS 353 +R L YR +D++ + + A L + W A Sbjct: 285 DCESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCDWNVELVENDQYVTAFKE 344 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI------EVCKE 399 ++ +D NT A+ L +LARE K + L A +LG+ + Sbjct: 345 SMDDDFNTPGALAVLFELAREVNKLKAENQAEANKLAARLKQLAGVLGLLEQDPETFLQG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE +++R K ++ AD R +L + G +LED G T W++ Sbjct: 405 DANNDEVAEIEAFIKQRNEARASKNWAVADEARNKLTAMGIVLED------GANGTTWRR 458 >gi|293390637|ref|ZP_06634971.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951171|gb|EFE01290.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 469 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 166/385 (43%), Positives = 233/385 (60%), Gaps = 30/385 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 12 LKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYD- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 71 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVVEMYKDFDALNILRPDFEPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S +YG SR+ +++ + G R+ Sbjct: 124 ATHHIPEIIDIVEKLIQRGHAYVADNGDVMFDVESFKDYGKLSRQDLEQLQAGARIEINE 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 184 IKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDLMFP 243 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 244 HHENEIAQSCCA-HGNQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYD 295 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A L + + +GI AV Sbjct: 296 AESVRYFLLTAHYRSQLNYSEENLNLAHGALERL--YTALRGIDKSAVAFGGENFVDAFR 353 Query: 353 SALYNDLNTVSAIQALHKLARESTK 377 A+ +D NT +A+ L ++ARE K Sbjct: 354 EAMDDDFNTPNALSVLFEMARELNK 378 >gi|82750237|ref|YP_415978.1| cysteinyl-tRNA synthetase [Staphylococcus aureus RF122] gi|109894947|sp|Q2YSD1|SYC_STAAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|82655768|emb|CAI80168.1| cysteinyl-tRNA synthetase [Staphylococcus aureus RF122] Length = 466 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 176/471 (37%), Positives = 270/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + ++P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQTVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + +N W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFSNYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|15596992|ref|NP_250486.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|218892253|ref|YP_002441120.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] gi|254240136|ref|ZP_04933458.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 2192] gi|21264027|sp|Q9I2U7|SYC_PSEAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735063|sp|B7VB84|SYC_PSEA8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|9947777|gb|AAG05184.1|AE004605_6 cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|126193514|gb|EAZ57577.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 2192] gi|218772479|emb|CAW28261.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] Length = 460 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 262/483 (54%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 V+R ++ +HYR PI+++ + L EA+ L ++ + KG+ + A + Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRF--YNALKGLPEAAPAEAAEYVERFAA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNASAHILGIE 395 A+ +D NT A L +LARE + + LL + ++ Sbjct: 344 AMDDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAF-LQ 402 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 E K + +E L+Q RL K ++ +D IR QL + G +LED G+ T Sbjct: 403 AGAE--GKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLED------GKGGT 454 Query: 456 RWK 458 W+ Sbjct: 455 TWR 457 >gi|223042919|ref|ZP_03612967.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14] gi|222443773|gb|EEE49870.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14] Length = 466 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 262/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMQEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGKGRPGWHIECSVMAYHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + + + S I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREAIATDLEEHSEYIDQI 345 Query: 348 DPAVL---SALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + + + +D NT +A+ A + LA+ + K H ++ + +LG Sbjct: 346 ETILRQFEAVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLHRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ N+ + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLKGKNENELLDEDIEKLIEERNEARKNKDFARADEIRDMLKERNIILED 456 >gi|297528461|ref|YP_003669736.1| cysteinyl-tRNA synthetase [Geobacillus sp. C56-T3] gi|297251713|gb|ADI25159.1| cysteinyl-tRNA synthetase [Geobacillus sp. C56-T3] Length = 466 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 186/487 (38%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR +VFD + R L + + Sbjct: 4 IRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAVVFDTIRRYLEFRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDK+I+ AR+ S+P I + + + +D L C PR Sbjct: 63 -VTYVSNFTDVDDKLIKAARELGESVPA------IAERFIEAYFEDIQALGCKKADIHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I IQ +I G+AYE + ++ + T YG S + IDE + G R+ Sbjct: 116 VTENIDAIIEFIQALIDKGYAYEVDGDVYYRTRKFREYGKLSHQSIDELQAGARIEIGEK 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 176 KDDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 236 HENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------REIDP 287 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSK---------- 344 V+R ML HYR PI+++ ++RL A L Q ST+ Sbjct: 288 QVLRFFMLSVHYRHPINYSEELLESARRGLERLKTAYSNLQHRLQASTNLTDNDEEWVSR 347 Query: 345 -GIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKN----HDLLPIFNASAHIL 392 I + + + +D NT + I L +LA+ E T + H L F A +L Sbjct: 348 IADIRASFIREMDDDFNTANGIAVLFELAKQANLYLQEKTTSEKVIHAFLREFEQLADVL 407 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + ++ L + IE L+Q+R K + F+ AD IR +L +K ILED P Sbjct: 408 GLTLKQDEL---LDEEIEALIQKRNEARKNRDFALADRIRDELRAKNIILED--TPQG-- 460 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 461 --TRWKR 465 >gi|127513439|ref|YP_001094636.1| cysteinyl-tRNA synthetase [Shewanella loihica PV-4] gi|187631636|sp|A3QFX9|SYC_SHELP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126638734|gb|ABO24377.1| cysteinyl-tRNA synthetase [Shewanella loihica PV-4] Length = 459 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 267/487 (54%), Gaps = 60/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ I P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVAFDMIVRYLRYIGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + ++ +T + TQ+ D L P +PR Sbjct: 61 -VNFHRNITDVDDKIIKRATEN------GESCDALTERLTQEMYHDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ ++ HAY A+N +++F +S P YG S + +D+ + G RV Sbjct: 114 ATQHMPEIIEMVERLLERDHAYIADNGDVLFSVASFPEYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 NKRDPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPAVLS------- 353 A +R +L HYR ++++ L +A+ L + + KG+ ++ A S Sbjct: 286 ASTVRYFLLSGHYRSQLNYSEDNLKQAKAALERL--YTALKGLDLSVEAAPASEYVAKFK 343 Query: 354 -ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEV-------------- 396 A+ +D NT A L +ARE K DL A+A LG+ + Sbjct: 344 EAMDDDFNTPEAYSVLFDMAREINRLKVDDL-----AAASALGVSMKQLGDVLGILEQDV 398 Query: 397 ---CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 K + + IE L+ ER K +++AD R L + G ILED G Sbjct: 399 DGFFKGEGSDDEVAQIEALIAERNRARTEKDWAAADVARDGLNALGVILED------GPE 452 Query: 454 MTRWKQK 460 T W++K Sbjct: 453 GTTWRKK 459 >gi|313110488|ref|ZP_07796373.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 39016] gi|310882875|gb|EFQ41469.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 39016] Length = 460 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 262/483 (54%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 V+R ++ +HYR PI+++ + L EA+ L ++ + KG+ + A + Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRF--YNALKGLPEAAPAEAAEYVERFAA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNASAHILGIE 395 A+ +D NT A L +LARE + + LL + ++ Sbjct: 344 AMDDDFNTAGACAVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAF-LQ 402 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 E K + +E L+Q RL K ++ +D IR QL + G +LED G+ T Sbjct: 403 AGAE--GKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLED------GKGGT 454 Query: 456 RWK 458 W+ Sbjct: 455 TWR 457 >gi|297610616|ref|NP_001064785.2| Os10g0463100 [Oryza sativa Japonica Group] gi|22758318|gb|AAN05522.1| putative cysteinyl-tRNA synthetase [Oryza sativa Japonica Group] gi|255679472|dbj|BAF26699.2| Os10g0463100 [Oryza sativa Japonica Group] Length = 520 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 185/500 (37%), Positives = 269/500 (53%), Gaps = 81/500 (16%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++T + F+ + MYVCG T YD++H+G+AR + FDVL+R L+Y E Sbjct: 21 ELRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYLKYLGYE 80 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + DA+S+ +S+ +F +D L CL PTH+P Sbjct: 81 --VNYVRNFTDIDDKIIKRANEAG-----EDALSL-SSRFIDEFHRDMYELQCLPPTHEP 132 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T HI Q+I LI I+ +G AY ++ F + P+Y S S RK+D+ + GTRV Sbjct: 133 RVTKHIEQIIDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKVDQNRPGTRVAVDA 192 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP WESPWGRGRPGWHIECSAMS+HYLG +FDIHGGG DLIFP Sbjct: 193 RKRNPADFALWKSAKEGEPSWESPWGRGRPGWHIECSAMSAHYLGNIFDIHGGGKDLIFP 252 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A E W+HNGF+N +G+KM+K++ NF TI +++ + Sbjct: 253 HHENELAQSQAA-YPESEVKCWMHNGFVNKDGQKMAKADKNFFTIRDIISL-------YH 304 Query: 304 APVIRLAMLMTHYREPID--------------FTVQRLTEAEILLSKWPQTSTSKGIIDP 349 +RL ++ THYR ++ + Q L + E +S + + I P Sbjct: 305 PMALRLFLMRTHYRSDVNHSDTALQFASGRLYYIYQTLHDGEETVSLYGEHKLENSI--P 362 Query: 350 A------------VLSALYNDLNTVSA--------------------------------- 364 A L + +DL+T +A Sbjct: 363 ADDQKLIEENRSNFLEKMSDDLHTTAALDHLMKLQQKLEHQKKKQSQKQQQQQQKKPEDY 422 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA--IEKLVQERLILLKM 422 IQAL L E T +L + S+ L ++ + L + A +++++++R + K Sbjct: 423 IQALVALQNEVTDKLSILGLMPMSS--LAEQLKDKALKRAGMTAEQLQQMIEQRTLARKN 480 Query: 423 KKFSSADYIRKQLESKGFIL 442 K F+ +D IR +L + G L Sbjct: 481 KDFAESDRIRTELSALGIAL 500 >gi|291613145|ref|YP_003523302.1| cysteinyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] gi|291583257|gb|ADE10915.1| cysteinyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] Length = 491 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 187/496 (37%), Positives = 269/496 (54%), Gaps = 72/496 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R EF+ I P+ +RMYVCG TVYD+ H+G+AR M+VFD++YR L+ + Sbjct: 2 LKIYNTLARDKQEFKPIIPNTVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWLKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + SI +T + +D L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIKRAAENKESI------HALTQRFIDAMHEDADTLGVQRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ ++ + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 114 ATQYVPQMLEMVAQLEQNGLAYQAADGDVNYAVRKFDGYGKLSGKSLEDLRAGERVEVVS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + E W+S WG+GRPGWH+ECSAM+S LG FDIHGGG DL Sbjct: 174 DKHDPLDFVLWKHAKDGEADEVKWDSKWGKGRPGWHLECSAMASDILGNHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A R + N W+HNGF+ ++ KMSKS GNF TI E+L + Sbjct: 234 QFPHHENEIAQSEGAHRCQYV-NYWMHNGFVRVDNEKMSKSLGNFFTIREVL-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------------SKWP 338 + A V+R +L HYR P++++ L +A+ L S++P Sbjct: 286 KYDAEVVRFFILRAHYRSPLNYSDVHLDDAKGALTRLYTALKSAPSSSILPPEGEGSEFP 345 Query: 339 QTST----SKGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FN 386 S +G+ID SA+ +D NT AI L LA E ++ + Sbjct: 346 SPSGRGARGEGVIDWDTPHAARFKSAMDDDFNTPEAIAVLFDLANEVNRSQSVTAAAELK 405 Query: 387 ASAHILGI------EVCKEHLNKNISIA------------IEKLVQERLILLKMKKFSSA 428 A +LG+ + + + N+++ I+ L++ R+ K K F+ A Sbjct: 406 TLAGVLGLLQRDPQDFLQGRASMNLTVPTPTLEASGGALDIDALIEARIAAKKSKNFAEA 465 Query: 429 DYIRKQLESKGFILED 444 D IRK+L G +LED Sbjct: 466 DRIRKELLGAGIVLED 481 >gi|312885230|ref|ZP_07744908.1| cysteinyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367089|gb|EFP94663.1| cysteinyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 459 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 182/480 (37%), Positives = 266/480 (55%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I+ I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPINAGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII RA + N++ +T + + +D L P +P+ Sbjct: 61 -LTFVRNITDIDDKIITRANEN------NESCEALTERLIGEMHRDFDALNMKRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATEYIQEIIQLVEKLIERGFAYVADNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHDTQ-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 + +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 SETVRYFLMSGHYRSQLNYSEENLNQARAGLERLYTSLRGLDLTVPAADGEEYVSRFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARE-----STKNHD---LLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE +T N L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRVKATDNEHASALGSLLRELADVIGILHQDPEAFLQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +K+ IE L++ R K +++AD R +L + G +LED G T W++K Sbjct: 406 DDKDQVAEIEALIKLRNDSRAAKDWATADVARDKLTAMGIVLED------GPSGTTWRRK 459 >gi|78485268|ref|YP_391193.1| cysteinyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] gi|109894958|sp|Q31H54|SYC_THICR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78363554|gb|ABB41519.1| cysteinyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] Length = 456 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 186/460 (40%), Positives = 259/460 (56%), Gaps = 36/460 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F I P+ + +YVCG TVYD+ H+G+AR M+VFD + R LR + Sbjct: 3 LKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + SI +TS+ +D L L P +P+ Sbjct: 62 -VTYVRNITDIDDKIIQRALENKESI------QSLTSRFIDAMHEDEKALNVLRPDMEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ ++ +I +I AY A N ++ F + +YG S + I+E G+RV Sbjct: 115 ATEYMDEIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINS 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK S EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGGLDL FP Sbjct: 175 VKKDPLDFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H GF+ ++ KMSKS GNF TI E+L + + Sbjct: 235 HHENEIAQSECATG-EHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVL-------KQYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 VIR +L +HYR P++++ + L A+ + + Q ++ ++ ++A Sbjct: 287 PEVIRYFLLASHYRSPVNYSEENLDVAKASVGRLYSALELVPADQAEPAESKLEAEFMAA 346 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG-IEVCKEHLNKN------- 404 + +D NT A+ L +LA+E K L + A+ +G +E E K+ Sbjct: 347 MNDDFNTPQAMAVLFELAKEVNKQKSPGLAALLKKLANQIGLLEQTAESFFKSQPSDSDL 406 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE L+ ER K K FS +D IR +L ++G L D Sbjct: 407 TDEMIEALIVERAEARKAKDFSRSDEIRDELLAQGIELLD 446 >gi|224475678|ref|YP_002633284.1| cysteinyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] gi|254781694|sp|B9DKW3|SYC_STACT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|222420285|emb|CAL27099.1| cysteinyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] Length = 466 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 264/471 (56%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ ++P ++MYVCGPTVY++ HIGNARP I +DV+ R Y + Sbjct: 2 ITLYNTLTRQKEPFEPLEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I + Q F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKLIKRSKE------LNESVPEIADRYIQAFYEDTGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMNHMDDIIEFIKDLVDKGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIESGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G+GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGKGRPGWHIECSVMAYNELGETIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNF+ +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFVLVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTV-----------------QRLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ + Q + E E + + S I Sbjct: 286 DVLRFFMISVHYRSPINYNMELVESAKSGLERIRNSYQAIEEREAIATDIEDQSEYIEQI 345 Query: 348 DPAVLS---ALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + +D NT +AI + LA+ E+T + ++ +F + +LG Sbjct: 346 DQLLAQFEKVMDDDFNTANAITTWYDLAKLANKYVLENTTSKKVIERFKEVFQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I + + ++ + IE L++ER K K F+ AD IR QL+++ ILED Sbjct: 406 IPLKGKQQDELLDEDIEALIEERNEARKNKDFARADEIRDQLKAQNIILED 456 >gi|49482759|ref|YP_039983.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|295427067|ref|ZP_06819703.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] gi|56749424|sp|Q6GJD9|SYC_STAAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49240888|emb|CAG39555.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|295128855|gb|EFG58485.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 466 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 176/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + ++P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQTVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R ++ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFVISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|138893764|ref|YP_001124217.1| cysteinyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2] gi|196251125|ref|ZP_03149804.1| cysteinyl-tRNA synthetase [Geobacillus sp. G11MC16] gi|166200148|sp|A4IJG8|SYC_GEOTN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|134265277|gb|ABO65472.1| Cysteine-tRNA ligase [Geobacillus thermodenitrificans NG80-2] gi|196209366|gb|EDY04146.1| cysteinyl-tRNA synthetase [Geobacillus sp. G11MC16] Length = 467 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 187/487 (38%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + + Sbjct: 4 IRLYNTLTRKKETFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDK+I AR+ S+P I + + + +D L C PR Sbjct: 63 -VTYVSNFTDVDDKLIRAARELGESVPA------IAERFIEAYFEDIEALGCKKADIHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I IQ +I G+AYE + ++ + T YG S + IDE + G R+ Sbjct: 116 VTENIETIIEFIQALIDKGYAYEVDGDVYYRTRKFDGYGKLSHQSIDELQAGARIEVGEK 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 176 KDDPLDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 236 HENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------RQIDP 287 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLSA 354 V+R ML HYR PI+++ ++RL A L ST+ D LS Sbjct: 288 QVLRFFMLSVHYRHPINYSEELLESARRGLERLRTAYGNLQHRLGASTNLTDNDGEWLSR 347 Query: 355 LY-----------NDLNTVSAIQALHKLARE---------STKN--HDLLPIFNASAHIL 392 L +D NT + I L +LA++ +++N H L F +L Sbjct: 348 LADIRASFIREMDDDFNTANGIAVLFELAKQANLYLQEKTTSENVIHAFLREFEQLMDVL 407 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + +E L + IE L+++R K + F+ AD IR +L++K ILED P Sbjct: 408 GLTLKQEEL---LDEEIEALIRQRNEARKNRDFALADRIRDELKAKNIILED--TPQG-- 460 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 461 --TRWKR 465 >gi|188534564|ref|YP_001908361.1| Cysteinyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] gi|229558632|sp|B2VBD5|SYC_ERWT9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188029606|emb|CAO97484.1| Cysteinyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] Length = 462 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 191/483 (39%), Positives = 260/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA++ ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRAQEN------GESIEQLTNRMIGEMHKDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +++ L++ +I HAY A+N +++F S P YGS SR+ +D+ + G RV Sbjct: 114 ATRHITEIVELVEKLIAREHAYVASNGDVMFSVDSDPQYGSLSRQDLDQLQAGARVEVAA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++LE + Sbjct: 234 PHHENEIAQSTCA-HDGPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLE-------HY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAVLS 353 A +R ++ HYR +++ L +A I L +T G + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFETRFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT A AL LARE + L +LG+ + + Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKAEAPAAADGLAARLRVLGGVLGLLEQDPEQFLQS 405 Query: 400 HLNKNIS--IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 N N IE L+Q R+ K ++ AD R +L G +LED G TRW Sbjct: 406 GANSNDEEVAQIEALIQMRIDARNEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|261345727|ref|ZP_05973371.1| cysteine--tRNA ligase [Providencia rustigianii DSM 4541] gi|282566216|gb|EFB71751.1| cysteine--tRNA ligase [Providencia rustigianii DSM 4541] Length = 462 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 265/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LQIFNTLTRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + N+++ +T++ + KD L L P +PR Sbjct: 61 -LNYVRNVTDIDDKIIKRAAEN------NESVEELTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L +++I GHAY A+N +++F+ + PNYG SR+ +D+ + G RV Sbjct: 114 ATRHIHEIIELTESLIERGHAYVADNGDVMFEVKTDPNYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKTLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSTCAHE-GPYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLQY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R +L HYR +++T + L +A L + + + + PA A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTSLRGTDKSVAPAGGEAFKARFCEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILG---------IEVC 397 + +D NT A L +ARE K D+ +A +LG ++ Sbjct: 346 MNDDFNTPEAYSVLFDIAREINRLKTEDMAAANGMAAQLRELAKVLGLLEQEPEAFLQGG 405 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + IE L+++R + K ++ AD R L + G +LED T W Sbjct: 406 AQGEDDAEVAKIEALIKQRNDARQSKDWALADQARDALTAMGVVLEDSSAG------TTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|237808667|ref|YP_002893107.1| cysteinyl-tRNA synthetase [Tolumonas auensis DSM 9187] gi|259511845|sp|C4LG04|SYC_TOLAT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|237500928|gb|ACQ93521.1| cysteinyl-tRNA synthetase [Tolumonas auensis DSM 9187] Length = 463 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 186/490 (37%), Positives = 262/490 (53%), Gaps = 63/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVVRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKII+RA + S +T + D L P +PR Sbjct: 61 -VTFVRNITDVDDKIIKRAAENAESC------DALTERLIGDMHADFDALKLQRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+Q+++ +AY A++ +++F S P YG S + I++ + G RV + Sbjct: 114 ATQHIGEIITLVQSLLDQNYAYVADSGDVLFSIDSFPEYGRLSGQNIEQLQAGARVDVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 SKRNPMDFVLWKMSKPGEPMWDSPWGAGRPGWHIECSAMNSKHLGHHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHHT-PYVNTWMHSGMVMVDEEKMSKSLGNFFTIRDVLKV-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---PAVLSALY---- 356 A +R ++ HYR P++++ L +A L + + +G+ D A LSA + Sbjct: 286 AETVRYFLMSGHYRSPLNYSDLNLQQARASLERL--YTALRGVEDGEEQAALSAPFDERF 343 Query: 357 -----NDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI---- 407 +D NT A L LAR+ + P A + + C L + + Sbjct: 344 KAAMDDDFNTPEAYSVLFDLARDLNRAKQDSP-----ADAVALAACLRRLGGVLGLLQQQ 398 Query: 408 -----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 IE L++ R K ++ AD R +L G +LED Sbjct: 399 PEQFLQSGAAAETDDVAEIELLIKTRNDARASKNWALADEARNKLTEMGIVLED------ 452 Query: 451 GQRMTRWKQK 460 G + T W++K Sbjct: 453 GPQGTTWRRK 462 >gi|300715706|ref|YP_003740509.1| Cysteinyl-tRNA synthetase [Erwinia billingiae Eb661] gi|299061542|emb|CAX58656.1| Cysteinyl-tRNA synthetase [Erwinia billingiae Eb661] Length = 462 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 263/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + + ++T++ + KD L L P +PR Sbjct: 60 SLNYVRNITDIDDKIIKRANEN------GETVEVLTNRMIGEMHKDFAALNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT HI ++I ++ +I HAY A+N +++F S P YG SR+ +++ + G RV E+ Sbjct: 114 ATRHISEIIEIVSKLIDREHAYVASNGDVMFSVPSDPQYGQLSRQDLEQLQAGARVEVEQ 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKANEPSWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L+ + Sbjct: 234 PHHENEIAQSTCAHE-GPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLQ-------HF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLS 353 A +R ++ HYR +++ L +A L + + + +PA Sbjct: 286 DAETVRCFLMSGHYRSQLNYGEDNLKQARSALERLYTAIRNTDSSAEPAGGEVFETRFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL---- 401 A+ +D NT A AL +ARE + + L A +LG+ L Sbjct: 346 AMDDDFNTPEAYSALFDMAREVNRLKAEDMSAANGLAAKLRQLAGVLGLLEQDPELFLQN 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 N + IE L+++RL + K ++ AD R +L + G +LED G + T W Sbjct: 406 GAQSNDDEVAEIEALIRQRLDARREKNWAQADMARDKLVAMGIVLED------GPQGTSW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|239636927|ref|ZP_04677925.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603] gi|239597475|gb|EEQ79974.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603] Length = 466 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 261/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VVYVSNFTDVDDKLIKRSKE------LNESVPEIADKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T +YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKKLVDEGYAYESNGDVYFRTRQFKDYGKLSHQSIDDLKVGARIEAGDQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTV-----------------QRLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ + Q + E E + + I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVSAAKSGLERIRNSYQLIEEREAIATDIDNQEEYINQI 345 Query: 348 DPAVL---SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLP----IFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+ + +++ ++ + +LG Sbjct: 346 DQILENFETVMDDDFNTANAVTAWYDLAKLANRYVLENVTSTNVIAKFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLKGNQQDDLLDEEIEKLIEERNEARKNKDFARADEIRDHLKEQNIILED 456 >gi|227824943|ref|ZP_03989775.1| cysteinyl-tRNA synthetase [Acidaminococcus sp. D21] gi|226905442|gb|EEH91360.1| cysteinyl-tRNA synthetase [Acidaminococcus sp. D21] Length = 483 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 187/503 (37%), Positives = 262/503 (52%), Gaps = 70/503 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT+ RK EF + P + +YVCG T Y+ HIGNARP +V+DV++R L + + Sbjct: 4 IRVYNTMTRKKEEFVPLHPGKVGIYVCGVTPYNHPHIGNARPFVVWDVIHRFLEHEGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII A +E + +I ++ + + + +L PR Sbjct: 63 -VTHVQNFTDVDDKIIREANKEGVTW------DVIANRYIKAYFEVMDKLHVRRAHVYPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HIP +I+ +Q +I HG+ Y + ++ + +YG S R +D+ G RV Sbjct: 116 VSDHIPDIIHTVQQLIDHGYGYVVDGDVYYRVEKFEHYGELSGRTLDDMMAGARVDVDER 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG+GRPGWHIECS MS+ YLG FD HGGG DLIFPH Sbjct: 176 KENPMDFALWKSAKPGEPSWDSPWGKGRPGWHIECSTMSTKYLGSSFDFHGGGSDLIFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A W+HNGF+ + KMSKS GNF T+ ++L + + Sbjct: 236 HENEIAQSEGATCCHPFVRYWVHNGFITINEEKMSKSLGNFFTVLDIL-------KEYEP 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIID------------ 348 V+R +L THYR P+DF+ RL EA E L + + KG+I Sbjct: 289 EVLRYFILQTHYRSPLDFSDARLKEASRSLERLRTAAQNLTELKGVISVGPDEDSLALRE 348 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLARESTKNHD------------LLPIFNAS-- 388 + L A+ +D NT AI L L +E H L+ + + + Sbjct: 349 KVSGFVESFLEAMRDDFNTSLAISYLFALGKEINILHQSVMTGGQKPDGKLVDMMDKAWK 408 Query: 389 --AHILGI---------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 I+GI E K+ + AIE L+ ER K K F AD IR +L Sbjct: 409 EMTSIIGILEEDPGAKTEAVKD--ADEDAAAIESLIAERQEARKAKDFKKADAIRDELAQ 466 Query: 438 KGFILEDYKNPDNGQRMTRWKQK 460 KG +LED P RWK++ Sbjct: 467 KGILLED--TPQG----VRWKRQ 483 >gi|298693861|gb|ADI97083.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 466 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 177/471 (37%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEY--QGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + S+P I K F +D L T PR Sbjct: 60 NVEYVSNFTDVDDKLIKRSQELNQSVPE------IAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKSGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----KGIID-- 348 V+R M+ HYR PI++ ++R+ + L+ + Q +T+ + ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNAS----AHILG 393 A+L + + +D NT +AI A + LA+ E+T + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILED 456 >gi|148244266|ref|YP_001218960.1| cysteinyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] gi|146326093|dbj|BAF61236.1| cysteinyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] Length = 462 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 188/486 (38%), Positives = 279/486 (57%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ F I+ + + +YVCG TVYD+ H+G+AR +++FDV+ R LR ++ Sbjct: 2 LKIYNTLSKQKEIFHPINNNKVGIYVCGMTVYDYCHMGHARVLVMFDVITRHLRRHFSN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I +T++ +D L L P +PR Sbjct: 61 -VEYVRNITDIDDKIIKRAVEN------KEDIYTLTNRFINAMHEDEHALGILPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN + Q+ +I+++I G AY+A+N ++ + NYG FSR+ +++ ++G R+ + Sbjct: 114 ATNTMEQIFCMIKSLIEKGFAYQAHNGDVYYSVRHFKNYGKFSRKNLNKLEIGARIKVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK S P EP W SPWG+GRPGWHIECSAMS+H+LG FDIHGGG+DL FP Sbjct: 174 AKKDPLDFVLWKMSKPNEPSWSSPWGKGRPGWHIECSAMSTHHLGNHFDIHGGGMDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ NIW+H GF+N+ +KMSKS NF TI +L +++ Sbjct: 234 HHENEIAQSEGANNC-TFVNIWMHVGFVNINNKKMSKSLNNFFTIRNVL-------KNYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 ++R ++ +HY P++F+ + L +A+ LS+ +T +G+ V + Sbjct: 286 GEILRYFIMSSHYHSPLNFSDENLNKAKSSLSRL--YTTIRGLNTSNVRTEEISIHFDYS 343 Query: 354 -----ALYNDLNTVSAIQALHKLAR----ESTKNHD-------LLPIFNASAHILGIEVC 397 AL +D NT A+ L +LA+ + N D LL IL + Sbjct: 344 VRFNEALDDDFNTPIALSVLFELAKIVNIQRENNTDQAKTLAQLLKKLGGYIGILQMNAD 403 Query: 398 KEHLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 K L + IS++ E++ + R K F+ +DYIR +L ILED N Sbjct: 404 K-FLKQGISLSDEQINIKITNRNKARINKDFTLSDYIRDELAKFDIILEDNING------ 456 Query: 455 TRWKQK 460 T W++K Sbjct: 457 TTWRKK 462 >gi|289450440|ref|YP_003475062.1| cysteine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184987|gb|ADC91412.1| cysteine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 473 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 183/481 (38%), Positives = 262/481 (54%), Gaps = 61/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++++L + EF ++P ++MY CGPTVY++ H+GNARP +VFD+L R L Y G K Sbjct: 1 MQLFDSLTNQKREFIPLEPGKVKMYSCGPTVYNYFHLGNARPFVVFDLLRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I RA +E ++ + K ++ KD L T QPR Sbjct: 60 -VTFVQNFTDIDDKMIRRANEEGVTL------RELADKYIAEYFKDADGLGIKRATIQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I +I + ++ GHAY + + + F T S P+YG S +DE + G RV Sbjct: 113 ATESIDAIIEQVGKLVAGGHAYVSTDGVYFSTRSFPDYGKLSHFHLDELEAGASERVNTG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K +PADF +WK P EP W SPWG GRPGWHIECS+M + YLG DIH GG DLIF Sbjct: 173 ENKHDPADFAVWKFKKPGEPAWPSPWGEGRPGWHIECSSMINRYLGPTIDIHSGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA ++ A+ W+HNGF+N+ KMSKS GNF T+ +++ + + Sbjct: 233 PHHENEIAQSECATG-KQLAHYWLHNGFINVNNEKMSKSLGNFFTVRDVV-------KHF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------------------- 343 P VIR +L HYR PI+F+ + L A+ L++ ++ Sbjct: 285 PYDVIRFFLLTGHYRSPINFSDELLQAAQTGLTRLRNCYSAVQFKLKSKAESAESADKAA 344 Query: 344 ------KGIID---PAVLSALYNDLNTVSAIQALHKLARE----------STKNHDLLPI 384 + ID A ++A+ +DLNT A+ A+ RE + +L Sbjct: 345 AAAESVRKSIDTARAAFIAAMDDDLNTPDALAAIFSWVREVNTLITSSPSAADCQAVLDF 404 Query: 385 FNASAHILGIE-VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 F+ +LG+ C+E I I LV+ R K K F+ AD +RKQ+ G+ L Sbjct: 405 FDELGDVLGLRWQCEE----AIPTEILALVEARTQAKKAKNFTLADELRKQITEAGYTLM 460 Query: 444 D 444 D Sbjct: 461 D 461 >gi|88860441|ref|ZP_01135079.1| cysteinyl-tRNA synthetase [Pseudoalteromonas tunicata D2] gi|88817639|gb|EAR27456.1| cysteinyl-tRNA synthetase [Pseudoalteromonas tunicata D2] Length = 459 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 264/466 (56%), Gaps = 44/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ +F+ + I MYVCG T+YD+ H+G+AR + FDV+ R R+ + Sbjct: 2 VQIYNTLTRQKEQFKPMVAGKISMYVCGITIYDYCHVGHARTYVSFDVMNRYFRHLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII+RA + N+ I+ +T + T+ +D L L +P Sbjct: 61 -VTYVRNITDVDDKIIKRAHEN------NEEINDLTVRMTKAMHEDFNALNMLPADIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP++I +++ +I GHAY A N +++FD S+ YG+ S++ + + G RV Sbjct: 114 VTGHIPEIITMVERLIEKGHAYIAGNGDVLFDVSTFAAYGALSQQDLSMLQAGARVEVDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ P EP W SPWG GRPGWHIECSAMSS +LG FDIHGGG DL FP Sbjct: 174 GKDDPLDFVLWKKAKPEEPSWGSPWGAGRPGWHIECSAMSSKHLGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA +K N WIH G + + KMSKS NF T+ E+L + + Sbjct: 234 HHENEIAQSCCASG-QKYVNTWIHTGMVQVNKEKMSKSLNNFFTVREVL-------KQYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----IDPAV-------L 352 +R ++ HYR ++++ + L +A L + + +G+ +D A Sbjct: 286 RETVRFFLINGHYRSQLNYSQENLDQARSSLERI--YTALRGVTPTPVDLAANEYVAKFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT A+ + +LA+E S+K +L + A +LGI + Sbjct: 344 QAMNDDFNTPEALPVVFELAKEINRVKDSDSSKAAELAFVLKAITEVLGIAQQEPESFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +++ IE L+ +R K ++ AD R +L + ILED Sbjct: 404 GNQDEDEVAQIEALIAQRNQARADKNWALADDARDKLNAMNIILED 449 >gi|218134243|ref|ZP_03463047.1| hypothetical protein BACPEC_02135 [Bacteroides pectinophilus ATCC 43243] gi|217991618|gb|EEC57624.1| hypothetical protein BACPEC_02135 [Bacteroides pectinophilus ATCC 43243] Length = 474 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 195/499 (39%), Positives = 266/499 (53%), Gaps = 70/499 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +KIYNTL K EF ++ ++MYVCGPTVY+ HIGNARPMIVFD + R L Y Sbjct: 4 KTNMKIYNTLTAKKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYLEYKG 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A +E + +I+++ + KD + T Sbjct: 64 YE--VNYVSNFTDVDDKIIKAANEEGVTA------DVISTRYIAECKKDMAGMNVKPATK 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--- 178 P AT I MI LIQ +I G+AY N + + T YG S++ ID+ + G R Sbjct: 116 HPLATEEIDGMIELIQTLIDKGYAYNVNGTVYYRTRKFKGYGKLSKKNIDDLEAGHRDIK 175 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK EP WESPW GRPGWH ECS M+ YLG+ DIH GG Sbjct: 176 VAGGEEKEDPLDFVLWKPKKEGEPYWESPWSEGRPGWHTECSVMAKKYLGESIDIHAGGE 235 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A+ ++ + W+HN FL + KMSKS GNF T+ ++ Sbjct: 236 DLIFPHHENEIAQSEAANGVQ-FSKYWMHNAFLKINNVKMSKSLGNFFTVRDI------- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----IIDPA---- 350 + V+R ML HYR P++F+ + + A+ L + +T+ G +ID A Sbjct: 288 AAKYDLQVLRFFMLSAHYRNPLNFSEELMESAKNSLER---ITTAAGNLNHMIDNAQDRE 344 Query: 351 -------VLS-----------ALYNDLNTVSAIQALH---KLARESTKN-------HDLL 382 +L+ A+ +D NT AI A+ KLA S K+ D+L Sbjct: 345 VSEEEKNILAQLDGMIKQFENAMDDDFNTADAITAIFDMVKLANTSCKSSDSKKFLQDVL 404 Query: 383 PIFNASAHILGIEVC--KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 + ILG+EV KE L+++I + L+QER K + F+ AD IR+ L KG Sbjct: 405 DKIAGTCGILGLEVVSEKELLDEDI----DNLIQERQQARKDRNFARADEIRQLLLDKGI 460 Query: 441 ILEDYKNPDNGQRMTRWKQ 459 +LED + RWK+ Sbjct: 461 VLEDTREG------VRWKR 473 >gi|167769106|ref|ZP_02441159.1| hypothetical protein ANACOL_00429 [Anaerotruncus colihominis DSM 17241] gi|167668746|gb|EDS12876.1| hypothetical protein ANACOL_00429 [Anaerotruncus colihominis DSM 17241] Length = 462 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 181/473 (38%), Positives = 256/473 (54%), Gaps = 54/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I+P +RMY CGPTVY++ HIGNARP+ VFD L R L Y + Sbjct: 1 MKIFNTLTRQKEEFVPIEPGKVRMYACGPTVYNYIHIGNARPICVFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I +A +E I + + + + +++ DT L PR Sbjct: 60 -VTFVQNFTDIDDKLINKANEE--GITVRE----VAERYIGEYMTDTKGLGIRPADIHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I +++ + G AYE + + F + YG S + ++E + G R+ Sbjct: 113 ATENIDTIINMVKTLEEKGFAYERDGSVYFRSRRFEEYGKLSHQPLEELEAGARIDVSDK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM +LG DIH GG DLIFPH Sbjct: 173 KEDPLDFVLWKAAKPGEPSWPSPWGEGRPGWHIECSAMIRRHLGDTIDIHCGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C E + W+HNG++N++ RKMSKS GNF T+ E+ E KFG Sbjct: 233 HENEIAQSECCTGAEYV-HYWMHNGYINVDNRKMSKSLGNFFTVREVAE--KFGYEP--- 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALY-------- 356 I+ ML HYR PI+++++ + + L + S +D A+ SAL Sbjct: 287 --IKFMMLQAHYRSPINYSLEVIEQCRAALERLHNCRDS---LDFALESALGQGDWHAFR 341 Query: 357 ---------------NDLNTVSAIQALHKLARE----------STKNHDLLPIFNASAHI 391 +DLNT I AL ++AR+ + F+ + Sbjct: 342 EKMDARAAQFVEAMDDDLNTADGIAALFEMARDINTYIAQPQPEEAVAYAVKRFDELCGV 401 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ +K++ +E L+ ER K K F+ AD IR QL G +L+D Sbjct: 402 LGL--LYNRASKDLDSEVEALIAERQAARKAKDFARADAIRDQLAGMGILLKD 452 >gi|301155906|emb|CBW15375.1| cysteinyl-tRNA synthetase [Haemophilus parainfluenzae T3T1] Length = 459 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 186/480 (38%), Positives = 270/480 (56%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEVFKPIHEGKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +D+ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIARGHAYVADNGDVMFDVESFKEYGKLSRQDLDQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWPSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIID--PAVLSA 354 A +R +L HYR ++++ + L A+ L + Q++ + G + A A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVALGGENFVEAFREA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE + K + L A ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELAGILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|148548000|ref|YP_001268102.1| cysteinyl-tRNA synthetase [Pseudomonas putida F1] gi|187629852|sp|A5W458|SYC_PSEP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148512058|gb|ABQ78918.1| cysteinyl-tRNA synthetase [Pseudomonas putida F1] Length = 460 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 181/467 (38%), Positives = 255/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTRCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR I+++ L +A+ L ++ P+ + G S A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------AHILGI------EVCKEHL 401 +D T A L L RE + D P A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDPEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR QL + G +LED K Sbjct: 406 EGKVDAAEVEGLIQARLQARADKNWAESDRIRDQLTAMGVVLEDSKG 452 >gi|302341971|ref|YP_003806500.1| cysteinyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] gi|301638584|gb|ADK83906.1| cysteinyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] Length = 483 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 190/490 (38%), Positives = 257/490 (52%), Gaps = 74/490 (15%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 +YNT R+ EF ++P +R+YVCG TVYD HIG+AR + FD + +R++ + Sbjct: 5 VYNTQSRRKEEFIPLEPGVVRVYVCGVTVYDDPHIGHARCYVAFDAM---VRHFLAKGWR 61 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V YVRN TDIDDKII RA + + K + F +D L L P+H+PRA Sbjct: 62 VNYVRNFTDIDDKIIRRAAES------GLGWRELADKYIESFRQDMAALDVLPPSHEPRA 115 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +MI IQ ++ GHAY+ +++F S YG SRR +++ + G RV Sbjct: 116 TEHIAEMIATIQTLMAKGHAYQIEGGDVLFAVESFDGYGKLSRRNLEDMQAGARVEVDPR 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S P EP W+SP G GRPGWHIEC+AMS YLG+ FDIHGGG DL+FPH Sbjct: 176 KKNPMDFVLWKASKPGEPSWDSPLGPGRPGWHIECTAMSGKYLGQTFDIHGGGEDLVFPH 235 Query: 245 HENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HENEIAQ +C + A+ W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 236 HENEIAQGEACTGHPL---AHYWLHNGFVRVNHEKMSKSLGNFFTIKDILKITR------ 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPA--VLSA 354 +RL +L HYR P+DF+ + EA L + Q + G +D A L+A Sbjct: 287 -PEALRLFLLSKHYRSPLDFSDAAIKEAGAGLERLYTALQAAQERAAAGPLDAAGQALAA 345 Query: 355 ------------LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 + +D NT AI AL LAR K L + A +E+C L Sbjct: 346 EIQALADEFEAGMDDDFNTARAIGALFGLARLGNK---LAAEPDGPAKGPLLELCARRLR 402 Query: 403 K---------------------------NISIA-IEKLVQERLILLKMKKFSSADYIRKQ 434 + + A IE L+ +R K K F+ AD IR Q Sbjct: 403 ELGGRLGLLRIDPAEFFRGAAGQTATQGGVGAADIEALIAQRNQARKDKNFAEADRIRDQ 462 Query: 435 LESKGFILED 444 L++ G L+D Sbjct: 463 LKAMGVTLQD 472 >gi|241888786|ref|ZP_04776092.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379] gi|241864462|gb|EER68838.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379] Length = 465 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 184/487 (37%), Positives = 267/487 (54%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + +RMYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVRMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E S S +T K F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEEGIST------SELTEKYITAFFKDYDALGCKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I ++ G AYEA ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIINFIAKLVEEGFAYEAKGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W+SP+G GRPGWHIECS M+ LG DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWDSPFGEGRPGWHIECSVMAKETLGDTIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHV-PFSNYWMHNAFINIDNVKMSKSLGNFRLVKDII-------AEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLSA 354 V+RL ML HYR PI++T++ + A+ K + S +D V++ Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELAKTNFEKIKTSYQNLQFRLNNDMSDEKLDTDVVAL 345 Query: 355 -----------LYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNAS----AHIL 392 + +D NT +A+ + +++ R S N + L + NA+ + IL Sbjct: 346 VTEELNKFEEYMQDDFNTANALSSWYEIVRISNSYTAKEAVNKETLELINAAFETYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V ++ N S IE L+ ER K + F+ AD IR L+ +G ILED K Sbjct: 406 GISVKED--NTLDSEHIESLISEREEARKNRDFALADKIRDDLKEQGIILEDTK------ 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKK 464 >gi|167758881|ref|ZP_02431008.1| hypothetical protein CLOSCI_01226 [Clostridium scindens ATCC 35704] gi|167663621|gb|EDS07751.1| hypothetical protein CLOSCI_01226 [Clostridium scindens ATCC 35704] Length = 468 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 186/476 (39%), Positives = 260/476 (54%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTLSKQKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E S +D IS + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKRAIEEGVS---SDEIS---KRYIAECKKDMDGMNIKPATKNPM 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +IQ +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEICGMVDMIQTLIDKGYAYEKNGTVYYRTRKFEEYGKLSHKNLDDLRSGERSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWESPWSDGRPGWHIECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ + Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNRKMSKSLGNFRTVREI-------SQQ 284 Query: 302 WPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----EILLSKWPQTSTSKGII 347 + ++R ML HYR P++F+ ++R+ A + LL S ++ Sbjct: 285 YDLQILRFFMLSAHYRSPLNFSADLMEASKSGLERIVNAADNLKFLLGNAKSESMTQEEE 344 Query: 348 DPAVLSALY---------NDLNTVSAIQALHKLAR--ESTKNHD--------LLPIFNAS 388 +A Y +D NT AI ++ L + +T + D L + Sbjct: 345 AAFAKTAEYVQEFERAMDDDFNTADAIASVFDLVKYINTTADADKSKEFLQNLFDLLVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ V K+ + ++ IEK+++ER K K F+ AD IR +L +KG +LED Sbjct: 405 TDVLGLIVDKKE--EMLAEDIEKMIEERQAARKAKDFARADAIRDELLAKGIVLED 458 >gi|303240982|ref|ZP_07327492.1| cysteinyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] gi|302591407|gb|EFL61145.1| cysteinyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] Length = 467 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 178/475 (37%), Positives = 257/475 (54%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF I+ +RMY CGPTVY++ HIGNARP I+FD + R L Y + Sbjct: 1 MKIYNTLTRKKEEFVPINEKEVRMYSCGPTVYNYFHIGNARPFIIFDTVRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA +E I + D + + +++ D L T P+ Sbjct: 60 -VKFVQNFTDIDDKMIKRANEE--GITVKD----LADRFIKEYFIDAKGLGIDEATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I LI+ + +G AY N ++ F YG S +++ +G+ V Sbjct: 113 ATENIDAIIDLIKKLEENGFAYNVNGDVYFSIGKFKEYGKLSHHSLEDLAIGSSVNVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF +WK P EP W+SPWG+GRPGWHIECSAM++ YLG+ DIH GG DLIFPH Sbjct: 173 KQNPMDFAVWKAQKPGEPAWDSPWGKGRPGWHIECSAMANKYLGETIDIHSGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNGF+N+ KMSKS GNF T+ +++E + Sbjct: 233 HENEIAQSEAASG-KPFAKYWMHNGFINVNNEKMSKSAGNFFTVRDIVE-------KFDY 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE-------------ILLSKWPQ----TSTSKGI- 346 VIR ML HYR PI+F+ L +A+ + L + Q + K + Sbjct: 285 EVIRFFMLSAHYRSPINFSADLLEQAQNGLERIYNCLDNLVYLGEHAQAKEMSDEEKSLQ 344 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG-------- 393 I + + +DLNT AI A+ + +E N ++ N+S I+ Sbjct: 345 SRLLEIKGKFIEGMDDDLNTADAIAAIFDIVKEV--NSNITASSNSSKEIIDFSHSLIRE 402 Query: 394 ----IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ N+ +E L+ +R K K + +D IR +L+ G +LED Sbjct: 403 LGGVLGIGQKQKENNLDSEVEALISQRQQARKEKNWKLSDEIRDKLKDMGIVLED 457 >gi|288940189|ref|YP_003442429.1| cysteinyl-tRNA synthetase [Allochromatium vinosum DSM 180] gi|288895561|gb|ADC61397.1| cysteinyl-tRNA synthetase [Allochromatium vinosum DSM 180] Length = 461 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 185/480 (38%), Positives = 269/480 (56%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+N+L R+ FQ I+P +RMYVCG TVYD+ H+G+AR ++VFDV+YR LR + Sbjct: 2 LQIHNSLTRQKAPFQPIEPGKVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLRALGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RNITDIDDKII RA + + +T + Q +D+ L L PT +PR Sbjct: 61 -VTYIRNITDIDDKIIRRANEN------GEPFQALTERFIQAMREDSEALGVLPPTDEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +++ ++Q +I G AY A+N ++ + S P+YG S + + + G+RV Sbjct: 114 ATAHIGEILAMVQTLIDKGLAYVADNGDVYYAVSRFPDYGKLSGKDPADLRAGSRVEIGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 SKRDPLDFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTCCLGNHFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N+W+HNGF+ + KMSKS GNF T+ E+L R + Sbjct: 234 HHENEIAQSEGATG-EPFVNVWMHNGFVRVNEEKMSKSLGNFFTVREIL-------RLYR 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIIDPAVL-SAL 355 +R +L +HYR P+++ L +A L++ P+ + ++G A +A+ Sbjct: 286 PEEVRYFILTSHYRSPLNYDDSALQKARAALTRLYTALRGLPEAAPAEGEAFRARFQAAM 345 Query: 356 YNDLNTVSAIQALHKLARE----STKNHDLLPIFNASAHILGIEVC------KEHLNKNI 405 +D NT A+ L +LARE + D A LG + + +L Sbjct: 346 DDDFNTPEALAVLFELAREINRLRSDGSDQAAAHGALLRELGAALGLLQDDPERYLRGGA 405 Query: 406 ------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE ++ +R + ++ AD +R+ L + G +LED G + T W++ Sbjct: 406 DADGPSDAEIEAMIAQRRAARANRDWAEADRLREALTAAGIVLED------GPQGTTWRR 459 >gi|294101993|ref|YP_003553851.1| cysteinyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] gi|293616973|gb|ADE57127.1| cysteinyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] Length = 472 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 185/494 (37%), Positives = 261/494 (52%), Gaps = 64/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN L RK F + + Y CGPTVYDF HIGNARP IVFDV R L G K Sbjct: 3 LMLYNDLTRKKEPFIPLKEGEVGFYSCGPTVYDFFHIGNARPFIVFDVFRRYLEDI-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSI-PINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +V+N TDIDDK+I RA +E ++ + DA +++ +D L P Sbjct: 62 VV-FVQNFTDIDDKMINRANEEGITVKELADAF-------IKEYFEDADALGVRRADIYP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+H+ +++ ++Q +I GHAY + ++ F S P YG S++ I++ + G+R+ Sbjct: 114 RATDHMKEIVEVVQTLIDKGHAYVVDGDVFFSVESFPGYGKLSKQSIEDLQSGSRIDVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK P EP WESPWG GRPGWHIECS MS+ YLG FDIH GG DLIFP Sbjct: 174 QKRHPLDFALWKAQKPGEPAWESPWGLGRPGWHIECSVMSTKYLGNTFDIHSGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQ+ A ++ W+HNG+L ++ KMSKS GNF+T+ + + Sbjct: 234 HHENEVAQAEAATGMQ-FVRFWLHNGYLLIDKEKMSKSLGNFLTVRN-------ARKKYS 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWP------QTSTSKGIID-PAVL 352 IR ML HYR PI+F+ + L +A E L + W Q+ K D A L Sbjct: 286 PLAIRYFMLSAHYRSPINFSEEGLNQATGAVERLRNCWTDLEYALQSREQKEKDDTEAFL 345 Query: 353 S-----------ALYNDLNTVSAIQALHKLAR---------------ESTKNHDLLPIFN 386 S + +D NT A+ ++ ++ R + Sbjct: 346 SEIKQAETKFYEEMNDDFNTAGALGSVFEVVRLINTYLKDNSSIDFKVCKAAQTFFTKID 405 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I+G+E KE L+ + IE +++ER K + F+ +D IR QL KG ILED Sbjct: 406 GIMGIMGLESEKEELDTS---EIESMIEERTAARKARDFAKSDAIRDQLAEKGIILED-- 460 Query: 447 NPDNGQRMTRWKQK 460 P+ T+WK++ Sbjct: 461 TPEG----TKWKKQ 470 >gi|330830124|ref|YP_004393076.1| Cysteinyl-tRNA synthetase [Aeromonas veronii B565] gi|328805260|gb|AEB50459.1| Cysteinyl-tRNA synthetase [Aeromonas veronii B565] Length = 458 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 185/463 (39%), Positives = 258/463 (55%), Gaps = 39/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYAGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + +T + D L + P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRAAETRVTC------DELTERLIGDMHADFDALGMVRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+Q+++ HAY A+N +++F S +YG S + +++ + G RV Sbjct: 114 ATQHIEEIIELVQSLLEKEHAYVADNGDVMFIVESYADYGKLSGQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGGDYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVL-SAL 355 A +R ++ HYR ++++ L +A L + P + + G A A+ Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFKEAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILGI-----EVCKEHLN 402 +D NT A AL L RE K D++ A +LGI E + Sbjct: 346 DDDFNTPEAYSALFDLVREINRQKAEDMVVAAALGARLRELGAVLGILQQDPEAFLKGDE 405 Query: 403 KNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +A IE+L+ ER K +++AD R +L G +LED Sbjct: 406 ADEEVAEIERLIAERNQARADKNWAAADAARNRLTEMGIVLED 448 >gi|229591304|ref|YP_002873423.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens SBW25] gi|259511840|sp|C3JYD3|SYC_PSEFS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229363170|emb|CAY50215.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens SBW25] Length = 462 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 180/478 (37%), Positives = 261/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFDALTERMIAAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGTKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALY 356 V+R ++ +HYR I+++ L +A+ L ++ P + + G A + + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPSVAPAGGEAFVARFTEVM 345 Query: 357 N-DLNTVSAIQALHKLARESTKNHDLLPI--------FNASAHILGI------EVCKEHL 401 N D T A L ++ RE + + A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLDAAAGLAARLKELASVLGVLQMKPEDFLQAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A ++ L+Q RL K ++ +D IR QL + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVDALIQARLAARANKDWAESDRIRDQLTAMGVVLED------GKGGTTWR 457 >gi|157374677|ref|YP_001473277.1| cysteinyl-tRNA synthetase [Shewanella sediminis HAW-EB3] gi|187631638|sp|A8FTH6|SYC_SHESH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157317051|gb|ABV36149.1| Cysteine--tRNA ligase [Shewanella sediminis HAW-EB3] Length = 459 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 187/484 (38%), Positives = 263/484 (54%), Gaps = 54/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RNITD+DDKII+RA + S +T + + +D L P +PR Sbjct: 61 -VNFLRNITDVDDKIIKRANENKESC------ESLTERLIGEMHRDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I HAY N +++F SS P YG S + +D+ + G RV + Sbjct: 114 ATLHIPEIIDMVEKLIEKEHAYVSGNGDVLFSVSSFPEYGRLSGQNLDQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSCCAHNT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLE-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKGIIDPAVLS---A 354 A +R +L HYR ++++ L +A+ L K S D V A Sbjct: 286 AATVRYFLLSGHYRSQLNYSEDNLKQAKSALERLYTSLKGLDLSVEAASADEYVAKFKVA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH------LNKNISI- 407 + +D NT A L ++ RE + L NA A LG+++ KE L++++ Sbjct: 346 MDDDFNTPEAYSVLFEMVREINR---LKEADNAKASSLGVKL-KELADVLGILDQDVDTF 401 Query: 408 -----------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER K + +AD R L + G ILED G T Sbjct: 402 FKGEGSTDEVAEIEALIAERNRARAEKDWPAADVARDGLNALGVILED------GPEGTT 455 Query: 457 WKQK 460 W++K Sbjct: 456 WRKK 459 >gi|320016265|gb|ADV99836.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 461 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P E WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGESRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGIEVCKEHL----- 401 + +D NT A L +ARE KN D+ + A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|152979432|ref|YP_001345061.1| cysteinyl-tRNA synthetase [Actinobacillus succinogenes 130Z] gi|187629819|sp|A6VQ79|SYC_ACTSZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150841155|gb|ABR75126.1| cysteinyl-tRNA synthetase [Actinobacillus succinogenes 130Z] Length = 459 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 190/480 (39%), Positives = 264/480 (55%), Gaps = 48/480 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I+ + + MYVCG TVYD H G+ R + FDV+ R LR+ Sbjct: 2 LKIFNTLTREKEEFKPINQNQVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRFL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 60 NLRYVRNITDVDDKIIKRALEN------NETCDQLVERMIAEMHKDFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I ++ ++ GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVDALLQRGHAYLAADGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKELGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA E N W+H G L + KMSKS NF TI ++L TK + Sbjct: 234 HHENEIAQSCCAHDGE-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDIL-TK------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAVLSA 354 A +R L YR +D++ + + A L + W ++ A A Sbjct: 286 AESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCDWNSELPAQDQYVGAFKDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASAHILGI-----EVCKEH 400 + +D NT A+ L +LARE K NH L A +LG+ E + Sbjct: 346 MDDDFNTPGALAVLFELAREINKLKAENPAQANH-LAARLKHLAGVLGLLEQDPEAFLQG 404 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +N + IE L+++R K +++AD R L+ G +LED G T W++ Sbjct: 405 GAENEEVGKIEALIKQRNDARAEKNWAAADAARDALKEMGVVLED------GANGTSWRK 458 >gi|254234889|ref|ZP_04928212.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa C3719] gi|126166820|gb|EAZ52331.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa C3719] Length = 460 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 182/483 (37%), Positives = 262/483 (54%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 V+R ++ +HYR PI+++ + L EA+ L ++ + KG+ + A + Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRF--YNALKGLPEAAPAEAAEYVERFAA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNASAHILGIE 395 A+ +D NT A L +LARE + + LL + ++ Sbjct: 344 AMDDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAF-LQ 402 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 E K + +E L+Q RL K ++ +D IR +L + G +LED G+ T Sbjct: 403 AGAE--GKVDAAEVEALIQARLEARAAKNWAESDRIRDRLTAMGVVLED------GKGGT 454 Query: 456 RWK 458 W+ Sbjct: 455 TWR 457 >gi|119945844|ref|YP_943524.1| cysteinyl-tRNA synthetase [Psychromonas ingrahamii 37] gi|119864448|gb|ABM03925.1| cysteinyl-tRNA synthetase [Psychromonas ingrahamii 37] Length = 461 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 275/482 (57%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F+ + P + MYVCG T+YD+ HIG+ R + FD + R LR+ Sbjct: 2 LKIYNSLTRQKEPFKPLIPGKVGMYVCGITIYDYCHIGHGRTFVAFDTVARYLRF--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y+RNITD+DDKII+RA + N++ +TS+ T+ +D L L P +PR Sbjct: 60 SLNYIRNITDVDDKIIKRAAEN------NESCDQLTSRFTEAMHQDFDALFMLRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+H+P++I +I+ +I GHAY A NN+++F S YG S + ++ + G+RV + Sbjct: 114 VTDHMPEVIEMIKKLIAKGHAYVAENNDVLFAVDSFKEYGQLSGQNLEMLRAGSRVEVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK + P EP W SPWG GRPGWHIECSAM+ +LG+VFDIHGGG DL FP Sbjct: 174 SKRNPLDFVLWKMAKPAEPFWTSPWGNGRPGWHIECSAMNHKHLGEVFDIHGGGSDLAFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS NF TI E+L KF + Sbjct: 234 HHENEIAQSCCAHH-GQYVNTWMHSGMVQVDKVKMSKSLKNFFTIKEVL---KF----FD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPAVL------ 352 + +R ++ HYR ++++ L +A L + T + +D L Sbjct: 286 SESVRYFLISGHYRSQLNYSEDNLKQARASLERLYNSVRDLTFSKDTPLDKTNLHYQQFI 345 Query: 353 SALYNDLNTVSAIQALHKLARE-------STKNHDL-LPIFNASAHILGI--EVCKEHLN 402 A+ +D NT A+ L LA+E + K L + A++LG+ + ++ L Sbjct: 346 KAMDDDFNTPGALAVLFDLAKEINRLKQSNIKQASLSAGLLVTLANVLGLLNQSAEQFLQ 405 Query: 403 ---KNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 KN +A IE L+++R + K ++SAD R +L + +LED G T W+ Sbjct: 406 GDEKNEEVAMIEALIKQRNDARQNKDWASADSARDKLAALKIVLED------GPGGTTWR 459 Query: 459 QK 460 ++ Sbjct: 460 KQ 461 >gi|73663535|ref|YP_302316.1| cysteinyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|109894949|sp|Q49V39|SYC_STAS1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72496050|dbj|BAE19371.1| cysteinyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 466 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 263/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+R+++ +++++ I + F +D L T PR Sbjct: 61 -VVFVSNFTDVDDKLIKRSKE------LDESVETIADRYIDAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ +I I++++ G+AYE+ ++ F T +YG S + +++ K+G R+ + Sbjct: 114 VMNHMDDIINFIKDLVDEGYAYESGGDVYFRTRKFQDYGKLSHQSLNDLKVGARIEQGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKQAKPGEISWESPFGEGRPGWHIECSVMAYHELGATIDIHAGGTDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNF+ +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFVLVHDII-------KQIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTV-----------------QRLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ + Q + E E + + S I Sbjct: 286 DVLRFFMISVHYRSPINYNMELVEAAKSGLERVRNSYQAIEEREAIATDIEAQSDYIAEI 345 Query: 348 DPAV---LSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + + +D NT +AI A + LA+ E+T + +L ++ + +LG Sbjct: 346 DKILEQFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTKVLGRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + ++ + +E L++ER K K F+ AD IR QL+ + ILED Sbjct: 406 VPLKGKDSDELLDEEVEALIEERNNARKDKDFARADEIRDQLKEQNIILED 456 >gi|315923786|ref|ZP_07920016.1| cysteine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622906|gb|EFV02857.1| cysteine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 465 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 178/476 (37%), Positives = 263/476 (55%), Gaps = 57/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ ++ EF I+P +RMY CGPTVY++ HIGNARP IVFDVL R L Y + Sbjct: 1 MKLYNTMTQRKEEFVPIEPGKVRMYSCGPTVYNYFHIGNARPFIVFDVLRRFLEYIGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII R+ +E + I K ++ KD L T PR Sbjct: 60 -VTFVQNFTDVDDKIINRSHEEGCTA------KEIADKYIAEYFKDADALGIRRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +P++I +++ + G AY + + P+YG S + + + + G R+ Sbjct: 113 VSDTMPEIIAMVKALEDRGLAYNVGGNVYYAVDRFPDYGKLSGQNVADLEAGARIDVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK++ P EP W+SPWGRGRPGWHIECSAMS +LG+ DIHGGG DLIFPH Sbjct: 173 KHSPLDFALWKKAKPGEPYWDSPWGRGRPGWHIECSAMSRKFLGETIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + E A W+HNG++N+ KMSKS GNF T+ ++ + Sbjct: 233 HENEIAQSEGSCGCE-FARYWVHNGYININDEKMSKSKGNFFTVRDI-------AGKYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------------WP 338 V+R+ MLM HYR P++F+ + L A+ L + W Sbjct: 285 EVVRMFMLMAHYRSPVNFSDELLASAQNALERFYNAKNQMIYLADHAEDRKPSPDEAAWI 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDL---LPIFNAS 388 Q+ T ++A+ +DLNT AI A+ +L R ES+ + L +F Sbjct: 345 QSLTQ---YKNGFIAAMNDDLNTADAIAAMFELVRAANTALSESSPKSAVTAALKLFREL 401 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A ++G+ ++ + ++ +E L+ ER + + F+ AD IR +L ++G +LED Sbjct: 402 AGVIGL--AEKEPDSHLESEVEALIAERQAARRARDFARADAIRDELAARGIVLED 455 >gi|325263764|ref|ZP_08130497.1| cysteine--tRNA ligase [Clostridium sp. D5] gi|324030802|gb|EGB92084.1| cysteine--tRNA ligase [Clostridium sp. D5] Length = 468 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 189/497 (38%), Positives = 263/497 (52%), Gaps = 72/497 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ +F I+ +RMYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTLSKRKEDFVPIEEGKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + ++ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEEGVTA------DEVSKRYIAECKKDMEGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEICGMVDMIGTLIEKGYAYEKNGTVYYRTRKFKEYGKLSHKNLDDLQSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKSLGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFT-----------------------------VQRLTEAEI 332 + V+R ML HYR P++F+ VQ +T AE Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSADLMDAAKTGLDRIITAADNLKFLKGNAKVQEMTSAE- 343 Query: 333 LLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLL 382 K T T + I + A+ +D NT AI ++ +L + ES+ + DLL Sbjct: 344 ---KEAFTKTQEYI--DSFERAMDDDFNTADAISSVFELVKYINTSADGESSAEYLQDLL 398 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + +LGI V K+ + ++ IE L++ER K K F+ AD IR +L S+G +L Sbjct: 399 DLLVKLTDVLGIIVEKDE--EMLAEDIEALIEERQAARKAKNFARADEIRDELLSRGIVL 456 Query: 443 EDYKNPDNGQRMTRWKQ 459 ED + +WK+ Sbjct: 457 EDTREG------VKWKK 467 >gi|255548846|ref|XP_002515479.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223545423|gb|EEF46928.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] Length = 563 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 183/505 (36%), Positives = 270/505 (53%), Gaps = 76/505 (15%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YNT+ R F+ + MYVCG T YD +HIG+AR + FDVLYR L++ + Sbjct: 70 ELYLYNTMSRNKDLFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYD 129 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C YVRN TD+DDKII RA + D IS+ + + ++F D L CL P+ +P Sbjct: 130 VC--YVRNFTDVDDKIIARANELG-----EDPISL-SRRYCEEFHNDMVYLHCLPPSIEP 181 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ++H+PQ+I +I+ I+ +G AY + ++ F P YG S RK+++ + G RV Sbjct: 182 CVSDHMPQIINMIKQILDNGCAYRIDGDVYFSIDGYPEYGKLSGRKLEDNRAGERVAVDS 241 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNPADF LWK + EP WESPWG GRPGWHIECSAMS+ YLG FDIHGGG+DL+FP Sbjct: 242 RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 301 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSC A R + W+HNGF+ + KMSKS GNF TI ++++ + Sbjct: 302 HHENEIAQSCAACR-GSNISYWVHNGFVTINSEKMSKSLGNFFTIRQVIDL-------YH 353 Query: 304 APVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKWPQ---------- 339 +R +L THYR P++++ Q L + E ++S+ Sbjct: 354 PLALRFFLLGTHYRSPVNYSDVQLESASERIFYIYQTLHDCETVISQHETAFEKDSVPSD 413 Query: 340 -------------TSTSKGIIDPAVLSALYNDLNTVS----------AIQALHKLAREST 376 TS S + P +L+AL + L ++ ++ AL K+ R++ Sbjct: 414 TLDGINKFSDVFVTSMSDDLHTPVLLAALSDPLKIINDMLHTRKRIQSLAALEKIVRDAL 473 Query: 377 KNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFSSADYIRK 433 L+P + ++ +E + + E+++Q ER + K + + +D IRK Sbjct: 474 SVLGLMPTTYSEV----LQQLREKALRRAKLTEEQVLQRIEERTVARKNRDYERSDAIRK 529 Query: 434 QLESKGFILEDYKNPDNGQRMTRWK 458 L + G L D +PD T W+ Sbjct: 530 DLATHGIALMD--SPDG----TSWR 548 >gi|292898782|ref|YP_003538151.1| cysteinyl-tRNA synthetase [Erwinia amylovora ATCC 49946] gi|291198630|emb|CBJ45738.1| cysteinyl-tRNA synthetase [Erwinia amylovora ATCC 49946] Length = 462 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 193/483 (39%), Positives = 261/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T + + KD L L P +PR Sbjct: 61 -LNYVRNITDIDDKIIKRAHEN------GESIEQLTQRMIGEMHKDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A+N +++F S YGS SR+ +D+ + G RV Sbjct: 114 ATRHIAEIIELVEKLIAREHAYVASNGDVMFSVDSDLQYGSLSRQDLDQLQAGARVEVTA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A N W+H+G + ++ KMSKS NF T+ ++LE + Sbjct: 234 PHHENEIAQSTSA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLE-------HY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAVLS 353 A +R ++ HYR +++ L +A I L +T G + + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFEARFRA 345 Query: 354 ALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNASAHILG-----IEVCKE----- 399 A+ +D NT A AL LARE +N + A +LG +E E Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKAENPAAVDGLAARLRVLGGVLGLLEQDPEQFLQS 405 Query: 400 --HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++N IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 406 GANVNDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|222152121|ref|YP_002561281.1| cysteinyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402] gi|222121250|dbj|BAH18585.1| cysteinyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402] Length = 469 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 259/473 (54%), Gaps = 49/473 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + I +YNTL R +F I+ ++MYVCGPTVY++ HIGNARP I FDV+ R Y Sbjct: 5 RMITLYNTLTRSKEKFVPIEEGRVKMYVCGPTVYNYIHIGNARPAISFDVVRRYFEYRGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I+ A + ++P I + + + +DT L C TH Sbjct: 65 E--VDYVSNFTDVDDKLIKAANELGETVPE------IADRFIEAYFEDTHALNCKTATHH 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I +I G+AYE+ ++ F T YG S + IDE K+G R+ Sbjct: 117 PRVMDHMEDIIEFIDELIKKGYAYESGGDVYFRTRKFEGYGKLSHQSIDELKVGARIQAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K + DF LWK + P E W+SPWG GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 177 ELKDDALDFALWKTAKPGEISWQSPWGEGRPGWHIECSVMAKKHLGDSIDIHAGGSDLTF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNDT-TFANYWLHNGFINIDNEKMSKSLGNFILVHDII-------KEI 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---QTSTSKGIIDPAVL------- 352 V+R M+ HYR PI++ ++ + A+ L + Q + I V+ Sbjct: 289 DPNVLRFFMISVHYRNPINYNMELVASAKAGLERIQNAYQAMKERQAISVDVVNHAETIL 348 Query: 353 ----------SALYNDLNTVSAIQALHKLARES-----TKNHDL------LPIFNASAHI 391 +A+ +D NT +AI A ++LA+++ + DL + +F + + Sbjct: 349 VIDNILKQFETAMDDDFNTANAITAWYELAKQANIYNQNPSTDLKVINRFIEVFEVFSEV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+++ + + + +E+L++ER K K F AD IR L+++ ILED Sbjct: 409 LGVKL--DTSDTLLDEEVERLIEERQEARKNKDFKRADEIRDALKAQNIILED 459 >gi|291550109|emb|CBL26371.1| cysteinyl-tRNA synthetase [Ruminococcus torques L2-14] Length = 468 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 184/476 (38%), Positives = 257/476 (53%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF ++ ++MYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTMSKRKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKNYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVTA------EEISQRYIAECKKDMDGMNIEPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I+ +I G+AYE N + + T +YG S + +D+ + G R V Sbjct: 113 ATEEIDGMISMIETLIEKGYAYEKNGTVYYRTRKFKDYGKLSHKNLDDLQSGGRTLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP W SPWG GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWVSPWGEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E + W+HNGFLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FSRYWMHNGFLNIDNRKMSKSLGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------------WPQTST 342 + V+R ML HYR P++F+ + + A+ L + +T Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKSGLERIITAADRLKFLMGSAKTEDMAETEA 344 Query: 343 SKGIIDPAVL----SALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 K + SA+ +D NT AI A+ L + +S+K + +L Sbjct: 345 EKFAKSAEYVGNFESAMDDDFNTADAIAAVFDLVKFINTMTDEDSSKEYLENLFDRLVRL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI V KE ++ + IE L+ ER K K F+ AD IR +L +KG +L+D Sbjct: 405 TEVLGIIVDKE--DEILDSDIEALIAERQAARKEKNFARADEIRDELLAKGIVLKD 458 >gi|292487539|ref|YP_003530411.1| cysteine tRNA synthetase [Erwinia amylovora CFBP1430] gi|291552958|emb|CBA20003.1| cysteine tRNA synthetase [Erwinia amylovora CFBP1430] Length = 502 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 193/483 (39%), Positives = 261/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 42 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 100 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T + + KD L L P +PR Sbjct: 101 -LNYVRNITDIDDKIIKRAHEN------GESIEQLTQRMIGEMHKDFAALNILPPDLEPR 153 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A+N +++F S YGS SR+ +D+ + G RV Sbjct: 154 ATRHIAEIIELVEKLIAREHAYVASNGDVMFSVDSDLQYGSLSRQDLDQLQAGARVEVTA 213 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 214 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 273 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A N W+H+G + ++ KMSKS NF T+ ++LE + Sbjct: 274 PHHENEIAQSTSA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLE-------HY 325 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAVLS 353 A +R ++ HYR +++ L +A I L +T G + + Sbjct: 326 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFEARFRA 385 Query: 354 ALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNASAHILG-----IEVCKE----- 399 A+ +D NT A AL LARE +N + A +LG +E E Sbjct: 386 AMDDDFNTPEAYSALFDLAREVNRMKAENPAAVDGLAARLRVLGGVLGLLEQDPEQFLQS 445 Query: 400 --HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++N IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 446 GANVNDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 499 Query: 458 KQK 460 ++K Sbjct: 500 RRK 502 >gi|254229902|ref|ZP_04923306.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] gi|262394608|ref|YP_003286462.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] gi|151937606|gb|EDN56460.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] gi|262338202|gb|ACY51997.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] Length = 460 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 186/483 (38%), Positives = 265/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP++I L+Q +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIPEIIELVQKLIERGFAYVADNGDVMFEVRKFDEYGKLSKQDLDQLQAGARVDVET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA K N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-KYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ + L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERL--YTSLRGLDLNAAPAGGEEYVSRFT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|237741373|ref|ZP_04571854.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 4_1_13] gi|294784133|ref|ZP_06749434.1| cysteine--tRNA ligase [Fusobacterium sp. 3_1_27] gi|229430905|gb|EEO41117.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 4_1_13] gi|294488203|gb|EFG35548.1| cysteine--tRNA ligase [Fusobacterium sp. 3_1_27] Length = 473 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 274/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIENVSIKE------IAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKKDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSKKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENERAQSKCGCG-GTFARYWMHNGYININGEKMSKSSGSFVLLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGI------- 346 VIRL +L +HYR+P++F+ L + + L + T KGI Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDAELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 I+ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEIEAKFIEAMDEDFNTAQALGYIFELVKAVNKTLDEVNISKKGLEVIDEVYSYLVM 405 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 MIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|146292587|ref|YP_001183011.1| cysteinyl-tRNA synthetase [Shewanella putrefaciens CN-32] gi|166225305|sp|A4Y5H9|SYC_SHEPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145564277|gb|ABP75212.1| cysteinyl-tRNA synthetase [Shewanella putrefaciens CN-32] Length = 461 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 264/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 63 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHRDFDALNMLRPDFEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 116 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 176 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 236 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ L +A L + T+ +D V Sbjct: 288 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFIVKF 344 Query: 353 -SALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILGI------EVC 397 +A+ +D NT A L + R + K L A +LG+ Sbjct: 345 KAAMDDDFNTPEAYSVLFDMVRDINRLKATDIAKASALAVAMKQLADVLGLLGQDPDAFF 404 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 K + + IE L+ ER K +++AD R +L+ G +LED G T W Sbjct: 405 KGEGSDDEVAEIEALIVERNRARSEKDWAAADVARNRLDILGVVLED------GPSGTTW 458 Query: 458 KQK 460 ++K Sbjct: 459 RKK 461 >gi|34762389|ref|ZP_00143391.1| Cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887971|gb|EAA25037.1| Cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 473 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 274/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIENVSIKE------IAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKKDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSKKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENERAQSKCGCG-GTFARYWMHNGYININGEKMSKSSGSFVLLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGI------- 346 VIRL +L +HYR+P++F+ L + + L + T KGI Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDAELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 I+ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEIEAKFIEAMDEDFNTAQALGYIFELVKAVNKTLDEVNISKKGLEVIDEVYSYLVM 405 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|258544752|ref|ZP_05704986.1| cysteine--tRNA ligase [Cardiobacterium hominis ATCC 15826] gi|258520023|gb|EEV88882.1| cysteine--tRNA ligase [Cardiobacterium hominis ATCC 15826] Length = 473 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 179/458 (39%), Positives = 257/458 (56%), Gaps = 36/458 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YN+L R+ F +P I MYVCG TVYD+ HIG+AR M+VFD + R LR Sbjct: 24 LQFYNSLTRQKEAFIPREPGKIGMYVCGMTVYDYCHIGHARVMVVFDTIARHLRA--SGY 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII RA + + I +T++ +D L C P +PR Sbjct: 82 ALKYVRNITDIDDKIIARAHEN------GEPIDALTARFITAMHEDEAALGCQRPDVEPR 135 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + MI L+Q +I GHAY A+N ++ + S P YG + R +D+ + G R+ Sbjct: 136 ATAAVSGMIELVQTLIAKGHAYAADNGDVYYAVRSFPAYGKLANRSLDDLRAGERIAVNE 195 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP W+SPWG+GRPGWHIECS M + LG+ FDIHGGG+DL FP Sbjct: 196 AKKDPLDFVLWKAAKPGEPAWDSPWGKGRPGWHIECSVMGAETLGEHFDIHGGGMDLKFP 255 Query: 244 HHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 HHE EIAQS C N WIHNGF+ ++ KMSKS GNF T+ ++L KK+ G + Sbjct: 256 HHECEIAQSEGACG---HPHVNYWIHNGFVQIDNEKMSKSLGNFFTVRDVL--KKYDGET 310 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDPAVLS----A 354 +R +L +HYR P++++ L EA+ L++ + + G +D ++ A Sbjct: 311 -----LRAFILSSHYRGPLNYSDAALDEAKKALTRLYSALDKAPADGAMDADAVAAFDEA 365 Query: 355 LYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHILGI------EVCKEHLNKNISI 407 + +D NT A L LAR ++ L + LG+ + K + ++S Sbjct: 366 MNDDFNTPKAFAVLFDLARRLNSGETALAATLKTLSGRLGLLQQNPADWLKGENSGSLSE 425 Query: 408 A-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I + R K ++ AD IR +L ++G I++D Sbjct: 426 ADILARIHARAEAKAAKDYARADAIRAELAAQGIIIKD 463 >gi|260495810|ref|ZP_05815931.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_33] gi|260196657|gb|EEW94183.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_33] Length = 472 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 273/482 (56%), Gaps = 56/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR--DY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT++L +P Sbjct: 60 KVTYVQNFTDVDDKMINKANIENVSI------KEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RAT++I +MI +IQ +I G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 RATDNIDEMIKIIQALIDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKRDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGNSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++ + G KMSKS G+FI + ++L K F GR Sbjct: 234 PHHENEMAQSKCACG-GTFARYWMHNGYIKINGEKMSKS-GSFILLRDIL--KHFEGR-- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P+DF+ + L + + L + T Sbjct: 288 ---VIRLFVLGSHYRKPMDFSDEELNQTKSSLERIENTLKRIKELDRENIKGTDDCQELL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 +K ++ + A+ D NT A+ + +L + K D I S Sbjct: 345 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEANISKKSLEVIDEVYSYLVM 404 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 405 IIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 464 Query: 446 KN 447 K+ Sbjct: 465 KD 466 >gi|225574357|ref|ZP_03782967.1| hypothetical protein RUMHYD_02424 [Blautia hydrogenotrophica DSM 10507] gi|225038413|gb|EEG48659.1| hypothetical protein RUMHYD_02424 [Blautia hydrogenotrophica DSM 10507] Length = 484 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 194/484 (40%), Positives = 263/484 (54%), Gaps = 64/484 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+KIYNTL ++ EF ++ ++MYVCGPTVY+ HIGNARPMIVFD R + Y G Sbjct: 13 EKMKIYNTLSKRKEEFIPLEEGRVKMYVCGPTVYNLIHIGNARPMIVFDTARRYMEYK-G 71 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V +V N TD+DDKII +A +E + I+ + ++ KD + T Sbjct: 72 YK-VNFVSNFTDVDDKIIAKANEEGVTA------DEISKRYIEECKKDMEGMNVRPATTH 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--- 178 P AT I M+ +IQ +I G AY A+ + F YG S + +D+ + G R Sbjct: 125 PLATEEIEGMVEMIQTLIDKGFAYPVADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRALQ 184 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG Sbjct: 185 VSGEEQKEDPLDFVLWKPRKEGEPAWPSPWCEGRPGWHIECSVMSKKYLGEEIDIHAGGE 244 Query: 239 DLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENEIAQS CC ++ A W+HNGFLN++ +KMSKS GNF T+ E+ E Sbjct: 245 DLIFPHHENEIAQSECCNGKV--FARYWMHNGFLNIDNKKMSKSLGNFFTVREIAE---- 298 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-----------------------EILL 334 + V+R ML HYR P++F+ + L EA +I + Sbjct: 299 ---QYDLQVLRFFMLNAHYRSPLNFS-RDLMEASKNSLERILNGAERLRFLADGAKKIEI 354 Query: 335 SKWPQTS--TSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLL 382 S Q S +K I A+ +D NT A+ A+ +L + ES+K + ++ Sbjct: 355 SPQEQESLNEAKKIYVSKFEEAMDDDFNTADALAAVFELVKFANTQINEESSKGYVVEVY 414 Query: 383 PIFNASAHILG--IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 I +LG IE KE L+++ IE+L+ ER KMK F+ AD IR QL + G Sbjct: 415 AILKQLCDVLGLIIEKEKEVLDED----IERLIAERQAARKMKNFAKADEIRDQLTNMGI 470 Query: 441 ILED 444 ILED Sbjct: 471 ILED 474 >gi|238754302|ref|ZP_04615659.1| Cysteinyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] gi|238707549|gb|EEP99909.1| Cysteinyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] Length = 463 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 181/470 (38%), Positives = 257/470 (54%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N+ +TS+ + KD L P +P Sbjct: 60 SLTYVRNVTDVDDKIIKRAAEN------NETCDQLTSRMLAEMHKDFDALNLERPDLEPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L+Q +I HAY AN +++F S P+YG SR+ +++ + G RV Sbjct: 114 ATHHISEIIQLVQRLIERDHAYVAANGDVMFAVDSDPDYGLLSRQDLEQLQAGARVEIAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R ++ HYR ++++ + L +A L + + +G+ AV Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERL--YTALRGMDTNAVAAGGEEFEARFR 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGI---------- 394 +A+ +D NT A L +ARE K D+ + AH+LG+ Sbjct: 344 AAMDDDFNTPEAYSVLFDMAREVNRLKGEDMAAANGLAAELRKLAHVLGLLAQDPEQFLQ 403 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ N IE L+++R K ++ AD R +L G +LED Sbjct: 404 SSAQTDVDNNEVSEIEALIKQRNDARSSKDWALADSARDRLNEMGIVLED 453 >gi|242372747|ref|ZP_04818321.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] gi|242349520|gb|EES41121.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] Length = 466 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 261/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMQEIIDFIKELVDEGYAYESDGDVYFRTRQFNGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAYHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + + + + I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREAIATDLEEHTEYMNQI 345 Query: 348 DPAVL---SALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNA-------SAHILG 393 D + + + +D NT +A+ A + LA+ + K N +FN + +LG Sbjct: 346 DEILKQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVFNKFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + ++ + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLKGKEADELLDEEIEKLIEERNEARKNKDFARADEIRDMLKERNIILED 456 >gi|71906558|ref|YP_284145.1| cysteinyl-tRNA synthetase [Dechloromonas aromatica RCB] gi|109894895|sp|Q47HK6|SYC_DECAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71846179|gb|AAZ45675.1| cysteinyl-tRNA synthetase [Dechloromonas aromatica RCB] Length = 456 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 184/465 (39%), Positives = 266/465 (57%), Gaps = 45/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L+R+ F I+P+ +RMYVCG TVYD+ H+G+AR M+VFD++YR L+ + Sbjct: 2 LKIYNSLKREKQVFTPIEPNKVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWLKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA I + I +T++ +D L P ++PR Sbjct: 61 -VTYVRNITDIDDKIIKRA------IENGETIQQLTNRFIAFMHEDADALGVQRPDYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ LI + +G AY+A++ ++ + P YG S + +D+ + G RV Sbjct: 114 ATEYVPEMLDLIGKLEANGLAYQASDGDVNYAVRKFPGYGKLSGKSLDDLRAGERVEVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKHAKPGEPAWQSPWGDGRPGWHIECSAMSSKLLGQHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQS----CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HHENEIAQS CC N W+HNGF+ ++ KMSKS GNF TI +LE Sbjct: 234 HHENEIAQSEGANCC-----NFVNYWMHNGFVRVDNEKMSKSLGNFFTIRTVLE------ 282 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPA----- 350 + A V+R +L HYR P++++ L +A + L + ID + Sbjct: 283 -QFDAEVVRFFILRAHYRSPLNYSDAHLDDARRSLDSLYFALRDVPPAAADIDWSNEFAG 341 Query: 351 -VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI--EVCKEHLNKNI 405 +AL D ++ AI L +LA E K+ L + ++G+ +L Sbjct: 342 RFAAALNEDFDSHGAIAVLFELAAEVNRQKSAGLSCLLKGLGGVIGLLEREPSAYLQGGA 401 Query: 406 SI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + A+ +++ +R K K F+ AD IR +L++ G IL+D Sbjct: 402 GVGGLDEAAVGQMIVDRAAAKKAKNFAEADRIRDELKAAGIILDD 446 >gi|312171645|emb|CBX79903.1| cysteinyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158] Length = 507 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 193/483 (39%), Positives = 261/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 47 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 105 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T + + KD L L P +PR Sbjct: 106 -LNYVRNITDIDDKIIKRAHEN------GESIEQLTQRMIGEMHKDFAALNILPPDLEPR 158 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A+N +++F S YGS SR+ +D+ + G RV Sbjct: 159 ATRHIAEIIELVEKLIAREHAYVASNGDVMFSVDSDLQYGSLSRQDLDQLQAGARVEVTA 218 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 219 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 278 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A N W+H+G + ++ KMSKS NF T+ ++LE + Sbjct: 279 PHHENEIAQSTSA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLE-------HY 330 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAVLS 353 A +R ++ HYR +++ L +A I L +T G + + Sbjct: 331 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFEARFRA 390 Query: 354 ALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNASAHILG-----IEVCKE----- 399 A+ +D NT A AL LARE +N + A +LG +E E Sbjct: 391 AMDDDFNTPEAYSALFDLAREVNRMKAENPAAVDGLAARLRVLGGVLGLLEQDPEQFLQS 450 Query: 400 --HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++N IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 451 GANVNDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 504 Query: 458 KQK 460 ++K Sbjct: 505 RRK 507 >gi|119774358|ref|YP_927098.1| cysteinyl-tRNA synthetase [Shewanella amazonensis SB2B] gi|187631632|sp|A1S4X2|SYC_SHEAM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119766858|gb|ABL99428.1| cysteinyl-tRNA synthetase [Shewanella amazonensis SB2B] Length = 459 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 262/482 (54%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSISRQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVCFDMIVRYLRYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITD+DDKII+RA + ++ +T + + D L + P+ +PR Sbjct: 61 -VNYQRNITDVDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMVRPSFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++ ++ GHAY A+ +++FD SS YG S + +++ + G RV Sbjct: 114 ATLHIDEIIDMVTRLLDRGHAYVAADGDVLFDVSSYAAYGRLSGQDLEQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 NKRNPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNTWMHTGMVMVDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R +L HYR ++++ L +A L + + KG+ ++ A + Sbjct: 286 AQTVRYFLLSGHYRSQLNYSEDNLKQARASLER--MYTALKGLDLTVEAAGADEFVSRFM 343 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHDLLP------IFNASAHILGI------EVCK 398 +A+ +D NT A L + RE K D+ A +LGI + Sbjct: 344 AAMDDDFNTPEAYSVLFDMVREINRLKTSDMAAASQLGVALKELAEVLGILSSTPEAFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ ER K + +AD R +L + G +LED G T W+ Sbjct: 404 GEGNADEVAEIEALIVERNRARAEKDWPAADVARDRLNALGVVLED------GPEGTTWR 457 Query: 459 QK 460 +K Sbjct: 458 KK 459 >gi|90407713|ref|ZP_01215892.1| cysteinyl-tRNA synthetase [Psychromonas sp. CNPT3] gi|90311182|gb|EAS39288.1| cysteinyl-tRNA synthetase [Psychromonas sp. CNPT3] Length = 460 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 180/481 (37%), Positives = 263/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF + + MYVCG T+YD HIG+ R + FD + R LR+ + Sbjct: 2 LKIYNTLSKQKEEFTPLVAGKVSMYVCGVTIYDNCHIGHGRTFVAFDSVVRYLRFKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + ++RNITD+DDKII+RA + N++ +T++ T+ +D L L P +PR Sbjct: 61 -LNFIRNITDVDDKIIKRANEN------NESCDALTARFTKAMHRDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+P +I +I+ +I HAY A+N +++F SS YG S + +D + G RV + Sbjct: 114 VTEHMPDVIAMIKTLIEKQHAYVASNGDVLFSVSSFDGYGKLSGQNLDMLQAGARVDVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK S EP WESPWG GRPGWHIECSAMS +LG +FDIHGGG DL FP Sbjct: 174 SKHDPLDFVLWKMSKENEPSWESPWGAGRPGWHIECSAMSFKHLGPIFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA AN W+H+G + ++ KMSKS NF TI ++LE ++ Sbjct: 234 HHENEIAQSCCA-HDATYANTWMHSGMVQVDKVKMSKSLNNFFTIKDVLE-------AYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------AVLS 353 A +R ++ HYR ++++ L +A L + I D A Sbjct: 286 AESVRYFLISGHYRSQLNYSEDNLKQARASLERLYTALRDVDISDAPIAKDNSHYQAFCK 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGI--EVCKEHLNK 403 A+ +D NT A+ L +LA+ K +L + ++LG+ + + L Sbjct: 346 AMDDDFNTPEALAVLFELAKALNKAKLSADKSAPELALLLRTLGNVLGLLDQSADDFLQG 405 Query: 404 NISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + S A IE L+++R K ++SAD R QL + +LED G T W++ Sbjct: 406 DESSAEVEKIELLIKQRNDARANKDWASADDARAQLSALNIVLED------GANGTTWRK 459 Query: 460 K 460 + Sbjct: 460 Q 460 >gi|327393038|dbj|BAK10460.1| cysteinyl-tRNA synthetase CysS [Pantoea ananatis AJ13355] Length = 461 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFTPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRYVGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + ++I +T++ + D L L P +PR Sbjct: 61 -VNYVRNITDIDDKIIKRANEN------GESIETLTNRMIAEMHSDFDALGILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ L++ +I GHAY A N +++FD S +YG+ SR+ +D+ + G RV Sbjct: 114 ATRHIPEIVELVEKLIARGHAYVAENGDVMFDVLSDVDYGALSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPSWPSPWGQGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L+ + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKG--IIDPAVLSA 354 A +R ++ HYR +++ L +A L + + + + G + A Sbjct: 286 AETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDRNAVAHGGEAFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EV---CK 398 + +D NT A L +ARE T + L A++LGI EV Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMTAANALAAKLREIANVLGILQQEPEVFLQSS 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N IE+ V+ R K ++ AD R +L + G I+ED G + + W+ Sbjct: 406 AQGNDEEVAEIERWVKARADARAAKDWAQADVARDKLNALGVIVED------GPQGSSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|146328731|ref|YP_001209134.1| cysteinyl-tRNA synthetase class I [Dichelobacter nodosus VCS1703A] gi|166200146|sp|A5EWG6|SYC_DICNV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146232201|gb|ABQ13179.1| cysteinyl-tRNA synthetase class I [Dichelobacter nodosus VCS1703A] Length = 456 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 182/461 (39%), Positives = 257/461 (55%), Gaps = 39/461 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R+ F I P+++ MYVCG TVYDF HIG+AR M+VFD + R LR + Sbjct: 4 LHLYNSLSRQKEPFHPITPNHVMMYVCGMTVYDFCHIGHARVMVVFDTIARHLRASGYQ- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + N+ I +T + +D L CL P+ +P+ Sbjct: 63 -LTYVRNITDIDDKIIRRAAEN------NEPIQALTQRFINAMHEDEAALGCLPPSIEPK 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +MI +I +I HAY A+N ++ + S YG + R++++ + G R+ Sbjct: 116 ATEYVAEMIAMIGELIAQNHAYIADNGDVYYSVRSFDEYGKLANRRLEDLRAGERIAINE 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP WESPWG GRPGWHIECS MS H LG FDIHGGG+DL FP Sbjct: 176 AKNDPLDFVLWKKAKTGEPSWESPWGAGRPGWHIECSVMSRHQLGDHFDIHGGGMDLKFP 235 Query: 244 HHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 HHE EIAQS C K N W+HNGF+N++ KMSKS GNF T+ ++L ++ Sbjct: 236 HHECEIAQSEPVCGG---KHVNYWLHNGFINIDNEKMSKSLGNFFTVRDVL-------KN 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGII----DPAVLS 353 + VIR ML +HYR P++++ L EA + L + T+ G I ++ Sbjct: 286 YAGEVIRFFMLQSHYRGPVNYSDAALEEAKRGLQRLYTALETAPTTGGAILLPYQERFVA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL--------LPIFNASAHILGIEVCKEHLNKNI 405 A+ +D NT AI L +LA+ K L A +L + K Sbjct: 346 AMDDDFNTPQAIAVLFELAKMLNKAAAAEAADIAFTLRTLAARLGLLTGDAKTLFQQKGA 405 Query: 406 SIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A IE + R K +++AD IR++L + G L+D Sbjct: 406 LSAAEIEAEIARRQAAKAAKDYATADSIREKLSALGIELKD 446 >gi|317495866|ref|ZP_07954229.1| cysteinyl-tRNA synthetase [Gemella moribillum M424] gi|316914043|gb|EFV35526.1| cysteinyl-tRNA synthetase [Gemella moribillum M424] Length = 465 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 186/488 (38%), Positives = 268/488 (54%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + +RMYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVRMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E S S +T K F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEEGIST------SELTDKYIAAFFKDYDALGCKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I +I G AYE+N ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIIDFIAKLIEEGFAYESNGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W SP+G GRPGWHIECS M+ LG DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWASPFGEGRPGWHIECSVMAKETLGDTIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + +N W+HN F+N++ KMSKS GNF + +++ S Sbjct: 234 HENEIAQSECHNHA-PFSNYWMHNAFINIDNVKMSKSLGNFRLVKDII--------SEID 284 Query: 305 P-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVL 352 P V+RL ML HYR PI++T++ + A+ K + T + + D V Sbjct: 285 PMVLRLFMLTVHYRTPINYTLENIELAKTNFEKLKTSYQNLEFRLNNEMTVEKLDDEVVA 344 Query: 353 SA----------LYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI----FNASAHI 391 A + +D NT +A+ + +++ R ++ N + L + F+ + I Sbjct: 345 LASSELEKFEEYMQDDFNTANALSSWYEVVRITNSYTAQNEVNKETLELLKAAFDTYSSI 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI V + N IEKL++ER K + F+ AD IR L+ +G ILED K Sbjct: 405 LGINVKDD--NSLEDSHIEKLIEERENARKNRDFALADKIRDDLKEQGIILEDTK----- 457 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 458 -QGVRWKK 464 >gi|330686235|gb|EGG97847.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU121] Length = 466 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 260/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLIKRSKE------LNESVPEIADKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T +YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKKLVDEGYAYESNGDVYFRTRQFKDYGKLSHQSIDDLKVGARIEAGDQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTV-----------------QRLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ + Q + E E + + I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVSAAKSGLERIRNSYQLIEEREAIATDIDNQEEYINQI 345 Query: 348 DPAVL---SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLP----IFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+ + ++ ++ + +LG Sbjct: 346 DQILENFEAVMDDDFNTANAVTAWYDLAKLANRYVLENVTSSKVIAQFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + IE+L++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLKGNQQDDLLDEEIEQLIEERNEARKNKDFARADEIRDHLKEQNIILED 456 >gi|325272290|ref|ZP_08138699.1| cysteinyl-tRNA synthetase [Pseudomonas sp. TJI-51] gi|324102572|gb|EGC00010.1| cysteinyl-tRNA synthetase [Pseudomonas sp. TJI-51] Length = 460 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 180/467 (38%), Positives = 255/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLTKAKETFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR I+++ L +A+ L ++ P+ + G S A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L L RE + D L +LG+ + + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDVDAAAGLAGRLRELGDVLGVLQLDADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR QL + G +LED K Sbjct: 406 EGKVDAAEVEGLIQARLQARADKNWAESDRIRDQLTAMGVVLEDSKG 452 >gi|332800102|ref|YP_004461601.1| cysteinyl-tRNA synthetase [Tepidanaerobacter sp. Re1] gi|332697837|gb|AEE92294.1| cysteinyl-tRNA synthetase [Tepidanaerobacter sp. Re1] Length = 466 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 181/470 (38%), Positives = 260/470 (55%), Gaps = 48/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL RK EF ++ ++++MY CGPTVYDF HIGNAR I FD++ L++ + V Sbjct: 3 IYNTLTRKKEEFVPLEDNHVKMYTCGPTVYDFFHIGNARVFITFDMVRNYLKFRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+V+N TDIDDK+I+RA E ++ + + ++ D L PRAT Sbjct: 61 TFVQNFTDIDDKMIKRANDEGITV------KELGERFIGEYFHDADTLGITRADVHPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI ++I LI+ ++ G+AYE N ++ + TS +YG S + IDE K G R+ KK Sbjct: 115 EHIDEIIDLIKILVEKGYAYEVNGDVYYKTSRFKDYGKLSHQNIDELKAGARIEPGEQKK 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF LWK P EP W+SPWG+GRPGWHIECS M+ YLG+ DIHGGG DLIFPHHE Sbjct: 175 DPIDFALWKAQKPGEPAWDSPWGKGRPGWHIECSVMAMKYLGETIDIHGGGPDLIFPHHE 234 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS A + A ++H G+LN+ +KMSKS GNF T+ ++L+T + V Sbjct: 235 NEIAQSEAATG-KPFARFFMHVGYLNINNQKMSKSLGNFFTVRDILKT-------YDPEV 286 Query: 307 IRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP------- 349 +R ML +HYR PI+F +++RL A + + K + + Sbjct: 287 LRFFMLSSHYRNPINFSQDLMEQAKNSLERLHNAIYSMEHLESVAQDKDLAEDDEKYLNK 346 Query: 350 ------AVLSALYNDLNTVSAIQALHKLAREST----KNHDLLPIFNASAHILG----IE 395 + A+ +D NT AI +L + RE +N I + IL + Sbjct: 347 LETNKNEFIKAMDDDFNTADAIASLFNIVREYNMFVDENSPKKLIVDTKDAILTLGSVLG 406 Query: 396 VCKEHLNKN-ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ + K + IE+ + ER K K ++ AD IR L+++G ILED Sbjct: 407 LFRKFMEKTLLDEEIEQKIIEREQARKEKNYALADKIRDDLKAQGIILED 456 >gi|260655864|ref|ZP_05861333.1| cysteine--tRNA ligase [Jonquetella anthropi E3_33 E1] gi|260629480|gb|EEX47674.1| cysteine--tRNA ligase [Jonquetella anthropi E3_33 E1] Length = 467 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 179/489 (36%), Positives = 258/489 (52%), Gaps = 58/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN L R F + + Y CGPTVYD+ HIGNARP IVFDVL R L Y + Sbjct: 3 LSLYNDLTRNKELFVPLADGKVSFYSCGPTVYDYFHIGNARPFIVFDVLRRYLEYKGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I+RA ++ ++ + + K + +D L ++ PR Sbjct: 62 -VTFVQNFTDIDDKMIDRANRDGITV------AQLAEKTIADYYEDADALGIKRASYNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++PQ+I L+Q +I GHAY + FD S P YG S++ +DE G R+ Sbjct: 115 ATEYMPQIIQLVQKLIDRGHAYAVGGTVYFDVKSFPQYGRLSKQNMDELLAGARIEVDDA 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK P EP W+SPWG+GRPGWHIECS MS+ LG DIH GG+DL FPH Sbjct: 175 KKCPLDFVLWKPQKPGEPAWDSPWGKGRPGWHIECSVMSTALLGDTIDIHSGGVDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + N W+HN ++ ++ KMSKS GNF+T E R + Sbjct: 235 HENEIAQAEAATG-KPFVNFWLHNEYILIDKEKMSKSLGNFLTARE--------ARKHYS 285 Query: 305 PV-IRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKG----IIDPAVLS-- 353 P+ IR ML HYR P++F+ + L +A ++ + W +K D A LS Sbjct: 286 PLAIRAFMLSAHYRSPVNFSPEGLEQAGAMVERLRNCWSDLQFAKSRRDLSYDDASLSEA 345 Query: 354 ----------ALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNASAHI 391 A+ +D NT A+ A+ ++ + + D F + Sbjct: 346 VRQGREDFEEAMDDDFNTAGALGAVFEVVKAVNTHLKSSGALSGKGLDDAEKFFRDIEEV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 +G+ + + I+ LV++R K K F+ +D +R +L ++G +LED P Sbjct: 406 MGLLGLSHETDGDAE--IDALVEQRNAARKAKNFAESDRLRDELAARGIVLED--TPQG- 460 Query: 452 QRMTRWKQK 460 T+WK+K Sbjct: 461 ---TKWKRK 466 >gi|300721928|ref|YP_003711208.1| cysteine tRNA synthetase [Xenorhabdus nematophila ATCC 19061] gi|297628425|emb|CBJ88990.1| cysteine tRNA synthetase [Xenorhabdus nematophila ATCC 19061] Length = 460 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 264/482 (54%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHEGKVGMYVCGITIYDLCHIGHGRTFVAFDAIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N++ +T++ + D L L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRA------IENNESCDDLTTRMLAEMHNDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY AN +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIEITETLIERGHAYVAANGDVMFSIDTNPDYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKQGEPSWESPWGTGRPGWHIECSAMNGKTLGHHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLGY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL----------SKWPQTSTSKGIIDPAVLS 353 A +R +L HYR +++T + L +A L K Q + G + Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTSLERLYTSLRGTDKSAQPAGGAG-FEARFTE 344 Query: 354 ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILG-IEVCKEHLNKN 404 A+ +D NT A L +ARE K D++ +A ILG +E EH + Sbjct: 345 AMNDDFNTPEAYSVLFDMAREINRLKAEDIVAANGLAAELRKLAGILGLLEQEPEHFLQG 404 Query: 405 IS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K+++ AD R QL G LED G + T W+ Sbjct: 405 GAQVDDDVAQIEALIKQRNDARKNKEWALADAARNQLNELGIELED------GPQGTTWR 458 Query: 459 QK 460 +K Sbjct: 459 RK 460 >gi|220910551|ref|YP_002485862.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7425] gi|254781541|sp|B8HQA4|SYC_CYAP4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219867162|gb|ACL47501.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7425] Length = 494 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 190/500 (38%), Positives = 275/500 (55%), Gaps = 73/500 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R F+ ++P +++MY CG TVYD+ H+G+AR IV+DV+ R L++ + Sbjct: 3 LSLYNTLTRHQEPFEPLEPGHVKMYCCGVTVYDYCHLGHARSYIVWDVVRRYLQWSGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RARQE N + ++ + Q + +D RL L P+ Sbjct: 62 -VRYVQNFTDIDDKILNRARQE------NSTMQAVSDRFIQAYHEDMQRLNILLADVYPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT+ IP++I LIQ ++ G+AY + ++ + P+YG S R++++ + G RV + Sbjct: 115 ATDVIPEIIQLIQTLVDQGYAYAVDGDVYYAVDRFPDYGKLSGRQLEQMQAGASGRVDDT 174 Query: 183 YHKK-NPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK +P DF LWK + E W+SPWG+GRPGWHIECSAM LG DIH GG Sbjct: 175 EPKKRHPLDFALWKAAKSEELSVYQPWDSPWGKGRPGWHIECSAMVRKELGHTIDIHCGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DLIFPHHENEIAQS A R + A+ W+HNGF+N++G KMSKS GNF TI L + Sbjct: 235 MDLIFPHHENEIAQSEAATRAD-LAHYWLHNGFVNIQGEKMSKSLGNFKTIRAFLNSGV- 292 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQTS 341 ++RL +L HYR+PIDF+ + +T A+ +W Sbjct: 293 -----DPMMLRLFVLQAHYRKPIDFSDETITAAQHSWQTLQEGLRFGYDYGQQLRWEDYQ 347 Query: 342 TSKGIIDPAVL-------------SALYNDLNTVSAIQALHKLARESTKNHDLL-----P 383 S DPA + +A+ +DLNT SAI L +LA+E + +L+ P Sbjct: 348 DSS-FGDPACMRIPDSGAEIERFRAAMDDDLNTASAIAVLFELAKELRREGNLISHAGQP 406 Query: 384 IFNAS------------AHILGIEVCKE---HLNKNISIA-IEKLVQERLILLKMKKFSS 427 + A +LG+EV E + +S A IE L+Q+R K K ++ Sbjct: 407 QLDPQELRSIWQTLVCLAQVLGLEVSPETEVTADDGLSEAEIEDLIQQRQAARKAKNYAE 466 Query: 428 ADYIRKQLESKGFILEDYKN 447 D IR +L++KG L D K+ Sbjct: 467 GDRIRNELKTKGITLIDQKD 486 >gi|255282796|ref|ZP_05347351.1| cysteine--tRNA ligase [Bryantella formatexigens DSM 14469] gi|255266570|gb|EET59775.1| cysteine--tRNA ligase [Bryantella formatexigens DSM 14469] Length = 469 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 189/478 (39%), Positives = 257/478 (53%), Gaps = 57/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K EF + P + MYVCGPTVY+F HIGNARPMIVFD + R + + E Sbjct: 1 MKIYNTLSKKKEEFVPLVPGKVSMYVCGPTVYNFIHIGNARPMIVFDTVRRYMEHKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A++E + I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAQEEGVTA------DEISQRYIAECKKDMEGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +I +I G+AY A+ + F T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIEMISTLIEKGYAYPAADGTVYFRTRKFKEYGKLSHKNLDDLRGGNRSLLVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW +GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEQKEDPLDFVLWKPKKEGEPYWESPWCQGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS CC +I A W+HNGFLN++ RKMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECCNGKI--FARYWMHNGFLNIDNRKMSKSLGNFFTVREISE------ 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------------WP 338 + V+R ML HYR P++F+ + + A L++ P Sbjct: 285 -KYDLQVLRFFMLSAHYRSPLNFSAELMEAAGNGLNRIVNAVENLKFLAGNASQETLTEP 343 Query: 339 QTSTSKGII--DPAVLSALYNDLNTVSAIQALHKLARESTKN--HDLLPIFNAS------ 388 + T K + + A+ +D NT AI A+ +L + + N D + Sbjct: 344 EAETQKALAEYEKKFDDAMDDDFNTADAISAIFELVKFANTNVTEDSSKALAEAVKDKIV 403 Query: 389 --AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ILG+ V K+ + + IE L++ER K K F+ AD IR L KG IL+D Sbjct: 404 ELSDILGLIVEKKE--EMLDAEIEALIEERQAARKAKNFARADEIRDILLGKGIILKD 459 >gi|107101226|ref|ZP_01365144.1| hypothetical protein PaerPA_01002258 [Pseudomonas aeruginosa PACS2] Length = 460 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 182/483 (37%), Positives = 262/483 (54%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQILIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 V+R ++ +HYR PI+++ + L EA+ L ++ + KG+ + A + Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRF--YNALKGLPEAAPAEAAEYVERFAA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNASAHILGIE 395 A+ +D NT A L +LARE + + LL + ++ Sbjct: 344 AMDDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAF-LQ 402 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 E K + +E L+Q RL K ++ +D IR +L + G +LED G+ T Sbjct: 403 AGAE--GKVDAAEVEALIQARLEARAAKNWAESDRIRDRLTAMGVVLED------GKGGT 454 Query: 456 RWK 458 W+ Sbjct: 455 TWR 457 >gi|120599417|ref|YP_963991.1| cysteinyl-tRNA synthetase [Shewanella sp. W3-18-1] gi|166225307|sp|A1RL92|SYC_SHESW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120559510|gb|ABM25437.1| cysteinyl-tRNA synthetase [Shewanella sp. W3-18-1] Length = 461 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 262/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 63 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHRDFDALNMLRPDFEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 116 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 176 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 236 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ L +A L + T+ +D V Sbjct: 288 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFIVKF 344 Query: 353 -SALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILGI------EVC 397 +A+ +D NT A L + R + K L A +LG+ Sbjct: 345 KAAMDDDFNTPEAYSVLFDMVRDINRLKATDIAKASALAVAMKQLADVLGLLGQDPDAFF 404 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 K + + IE L+ ER K + +AD R +L G +LED G T W Sbjct: 405 KGEGSDDEVAEIEALIVERNRARSEKDWPAADVARNRLNELGVVLED------GPSGTTW 458 Query: 458 KQK 460 ++K Sbjct: 459 RKK 461 >gi|160937871|ref|ZP_02085229.1| hypothetical protein CLOBOL_02763 [Clostridium bolteae ATCC BAA-613] gi|158439097|gb|EDP16851.1| hypothetical protein CLOBOL_02763 [Clostridium bolteae ATCC BAA-613] Length = 469 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 186/479 (38%), Positives = 258/479 (53%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL RK EF + P ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRKKEEFVPLTPGEVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E DA ++ + ++ KD + T P+ Sbjct: 60 -VRYVSNFTDVDDKIIKKAIEEGV-----DA-DTVSRRYIEECKKDMAAMNVKPATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +IQ +I HAY A + + F T S YG S + +DE + G R V Sbjct: 113 ATQEICGMLEMIQTLIDKNHAYVAGDGTVYFRTGSFKEYGKLSHKNLDELQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEGKEDPNDFVLWKPKKEGEPFWESPWCDGRPGWHIECSVMSKRYLGEQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECAND-KNFATYWMHNAFLNIDNKKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTS 343 + V+R ML HYR P++F+ V++L + E S +T+ Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERILTCVEKLRDLEAKASDSSKTAGE 344 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 + ++ A A+ +D NT AI A+ +L + + D + + Sbjct: 345 QATMEEADKLRGKYEEAMDDDFNTADAISAIFELVKLANTTADESGTREFVSYMKTMIEE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI E + + IE++++ R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVLGI--ITEKKEEVLDSEIEEMIEARQQARKDKNFALADEIRGKLLDMGIVLEDTR 461 >gi|332978776|gb|EGK15466.1| cysteine--tRNA ligase [Psychrobacter sp. 1501(2011)] Length = 508 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/500 (37%), Positives = 262/500 (52%), Gaps = 66/500 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+++ F+ + + MYVCG TVYD+ HIG+AR M+ FDV+ R LR+ + Sbjct: 25 LKIYDSMTTNKRSFEPLQVGKVGMYVCGMTVYDYCHIGHARVMVAFDVVSRWLRHLGFD- 83 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + + I +T + +D L C +P +PR Sbjct: 84 -VNYVRNITDIDDKIIARANEN------GEEIGQLTERFITAMHEDAAALGCESPDAEPR 136 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I + HAY A+N ++ + + YG S+RK+++ + G+RV Sbjct: 137 ATQHIDDMLQMIGTLEQKEHAYAASNGDVYYAVDTFEGYGKLSKRKLEDLQAGSRVDVDT 196 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK + EP W+S WG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 197 DKKNPFDFVLWKAAKAGEPQWDSSWGGGRPGWHIECSAMSTKCLGNSFDIHGGGHDLQFP 256 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A AN W+H GF+N++G KMSKS GNF TI E++E + Sbjct: 257 HHENEIAQSEAATGC-TYANNWMHVGFINVDGEKMSKSLGNFFTIREVME-------KFH 308 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------WPQTSTSKGIIDPA 350 IR +L +HYR ++F+ L EA L++ P + S+ ID A Sbjct: 309 PETIRFFILSSHYRSQVNFSDAALKEAHSGLTRVYQALKAAEAVLDTPVNAQSEATIDTA 368 Query: 351 ------------VLSALYNDLNTVSAIQAL-------HKLARESTKNHDLLPIFNASAHI 391 + A+ +D NT AI L +KLARE+ + + A+ + Sbjct: 369 SIDSEIRGYSANFIKAMNDDFNTPQAISVLFSLAKEVNKLARETENDQATAKLKAAAVTL 428 Query: 392 LGI------------EVCKEHLN-----KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 G+ E + H+ + I+ L+QER+ K F+ AD IR Sbjct: 429 KGLAGTLNIGQVKPTEFLQAHIGSVDEEQMTDEQIDTLIQERIDAKANKNFARADEIRNL 488 Query: 435 LESKGFILEDYKNPDNGQRM 454 L+ LED K +R+ Sbjct: 489 LQQNNIELEDSKQGTTWRRI 508 >gi|258404670|ref|YP_003197412.1| cysteinyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692] gi|257796897|gb|ACV67834.1| cysteinyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692] Length = 485 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 191/494 (38%), Positives = 267/494 (54%), Gaps = 73/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN++ R+ EF I +YVCG T YD+ HIG+AR +VFDVL +RY+ + Sbjct: 1 MQLYNSMTRQKEEFIPQTSGEISLYVCGITAYDYCHIGHARAAVVFDVL---VRYFRDQN 57 Query: 65 -CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN TD+DDKII+RA +EH + K + +D RL +P Sbjct: 58 FAVHFVRNFTDVDDKIIKRAAEEHLEA------DEVAQKYIAAYYEDMERLGVQPANFEP 111 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI L +N+I GHAY A+ ++ F S+P+YGS S R++D + G R+ Sbjct: 112 KATEHIQDMIGLAENLIAKGHAYATASGDVYFRVRSLPSYGSLSGRELDTMRAGARIAPG 171 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWKR+ P EP W SPWG GRPGWH+ECSAMS +LG DIHGGG DL F Sbjct: 172 EEKEDPLDFALWKRAKPEEPSWPSPWGNGRPGWHLECSAMSERFLGLPLDIHGGGQDLAF 231 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS A E A W+HNGF+ +E KMSKS GNFITI ++L S+ Sbjct: 232 PHHENERAQSLAASGKE-LARFWVHNGFVQVEAEKMSKSLGNFITIRDIL--------SY 282 Query: 303 PAP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------SKGIIDPA 350 P V+R ++ HYR P+DF + + EAE L + QT SK + P+ Sbjct: 283 YLPEVLRYFLVTKHYRSPLDFNWEVMDEAEKGLRRLYQTRQHIAEALSRSNWSKTEL-PS 341 Query: 351 VLSA------------LYNDLNTVSAIQ---ALHKLA---------RESTKNHDLL---- 382 LSA + +DLNT A+ L++LA R++ LL Sbjct: 342 ELSAEIDDLDAKWRQNMEDDLNTAGALGHVFTLNRLANRILEDKTWRKAEAGGKLLERIQ 401 Query: 383 PIFNASAHILGI---------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADY 430 IF ++LG+ + + K I A+ +L+ +R + K F++AD Sbjct: 402 SIFEHIGNVLGLFQQTPDAFLDDLRTQKAKRKGIDTSAVAQLITKRQEARRAKDFTTADS 461 Query: 431 IRKQLESKGFILED 444 +R+QLE G ++D Sbjct: 462 VRQQLEEMGIEVQD 475 >gi|148285058|ref|YP_001249148.1| cysteinyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong] gi|166225303|sp|A5CFB8|SYC_ORITB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146740497|emb|CAM81053.1| cysteinyl-tRNA synthetase, class Ia [Orientia tsutsugamushi str. Boryong] Length = 478 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/489 (38%), Positives = 273/489 (55%), Gaps = 55/489 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL RK F ++ +++MYVCGPTVYD HIGNAR ++V+D+LYR+L + Y + + Sbjct: 5 IYNTLSRKKERFVPLNCKSVKMYVCGPTVYDIPHIGNARSVVVYDLLYRVLSFLYDRQNI 64 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA++ + IN I +T + T +F +D + L C PT +P+AT Sbjct: 65 TYVRNITDIDDKIINRAKE----LKIN--IFKLTHETTIKFHEDMSYLGCWNPTIEPKAT 118 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++I MI +I ++I G+AY ++ + F + +Y SRR D + + + K Sbjct: 119 DNIDVMINIITSLIQTGNAYSTDDGHVYFAVKTFQDYNLLSRRTFDSMMLNSSESSEQQK 178 Query: 186 KNPADFILWKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 ADF+LWK + ++ ++SPWG+GRPGWHIECSAMS +LG+ FDIHGGG DLI Sbjct: 179 SYFADFVLWKPANADNEDIDAVFDSPWGKGRPGWHIECSAMSYKFLGENFDIHGGGADLI 238 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS CA + A+ W+HNGFL ++G KMSKS NF+T+ +L + G Sbjct: 239 FPHHTNEIAQSRCAFPKSRHASYWVHNGFLTVKGEKMSKSLNNFVTVRDLQKQNINGA-- 296 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------------- 346 +RL L THYR+P+DF + L +A+ +++ T S + Sbjct: 297 ----AVRLMFLSTHYRKPLDFNDKSLNDAKNIINYLYDTIDSVNVTVQQQDNTKAEFKGN 352 Query: 347 -IDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIFNASA 389 ++AL +DLN+ AI L +A++ + + +LL I + Sbjct: 353 AFTVEFINALLDDLNSPKAIVCLLNIAKQIRRQNQSEYKLALTQALLYASNLLGILHNYQ 412 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 I K++ N I I+ L+ +R+ + K ++ AD IR QL S G L D Sbjct: 413 FIKDSNDVKDNSNV-IPHEIDLLIAKRIQAKQDKDWNLADQIRSQLLSNGISL-----TD 466 Query: 450 NGQRMTRWK 458 T WK Sbjct: 467 KADGTTSWK 475 >gi|262373040|ref|ZP_06066319.1| cysteinyl-tRNA synthetase [Acinetobacter junii SH205] gi|262313065|gb|EEY94150.1| cysteinyl-tRNA synthetase [Acinetobacter junii SH205] Length = 473 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 192/475 (40%), Positives = 268/475 (56%), Gaps = 51/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGQIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII RA + ++I +T++ + +D L C AP P+AT Sbjct: 64 RYIRNITDIDDKIIARANEN------GESIQQLTARFIEAMNEDAANLGCAAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMISNLVDKGAAYPASNGDVYFEVTKFDKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPAWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGI--IDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ LS+ + QT K + +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALSRFYHSFKAYQQTYGQKTVDALDQSFVER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE---------STKNHDLLPIFNASAHILGI--EVCKE 399 +A+ +D NT A+ L +L +E + + L +ILG+ E Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQAEQATVLYSTLRQLTNILGLVQHDVDE 409 Query: 400 HLNKNIS--------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L +I IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQEALTLSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLDQGVVLEDTR 464 >gi|269468026|gb|EEZ79749.1| cysteinyl-tRNA synthetase [uncultured SUP05 cluster bacterium] Length = 452 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 183/468 (39%), Positives = 259/468 (55%), Gaps = 45/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ F IDP+ + MYVCG TVYD+ H+G+AR +++FDV+ R LR ++ Sbjct: 2 LKIYNTLSKQKEVFHPIDPNKVGMYVCGMTVYDYCHMGHARVLVMFDVITRHLRRHF--P 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I +T++ +D L L P +PR Sbjct: 60 NVEYVRNITDIDDKIIKRA------VENKEDIYSLTNRFIDAMHEDERALGVLPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+ + QM Y+I+ +I G AY+A N ++ + YG S + +DE + G RV + Sbjct: 114 ATDAMDQMFYMIEALIEKGIAYQAKNGDVYYSVRDFEGYGKLSGKNLDELEAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP W SPWG GRPGWHIECSAMS+H+LG FDIHGGG+DL FP Sbjct: 174 DKKDPLDFVLWKMAKPSEPSWSSPWGDGRPGWHIECSAMSTHHLGNHFDIHGGGMDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H GF+N+ KMSKS NF TI +LE S+ Sbjct: 234 HHENEIAQSEGANGC-TFVNTWMHVGFVNINDEKMSKSLNNFFTIRVVLE-------SYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVL------- 352 +R ++ +HYR P++F+ L A+ L++ S S +D Sbjct: 286 GETLRYFIMSSHYRSPLNFSDDNLNLAKTSLTRLYTAMRGLSASDAAMDEVSQRFDFESR 345 Query: 353 --SALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKE 399 +AL +D NT A+ L +LA+ D LL IL + Sbjct: 346 FNAALDDDFNTPIALSILFELAKAVNLQRDQDIDQANALSQLLQKLGGYIGILQTD-ADS 404 Query: 400 HLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + +A E + +++R K F+ +D+IR +L G L+D Sbjct: 405 FLKRGVDLADEDIDAKIKQRDEAKAYKDFALSDHIRGELPKLGLELKD 452 >gi|158319520|ref|YP_001512027.1| cysteinyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] gi|187629787|sp|A8MLB7|SYC_ALKOO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|158139719|gb|ABW18031.1| cysteinyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] Length = 464 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/471 (38%), Positives = 256/471 (54%), Gaps = 48/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF ++ +RMY CGPTVY++ HIGNAR +VFD L R L Y + Sbjct: 1 MKLYNTLTRKKEEFIPLEEGKVRMYACGPTVYNYFHIGNARTFMVFDALRRYLIYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII RA +E A I+ + +++ D L P+ Sbjct: 60 -VTFVQNFTDVDDKIIRRANEEGV------APEEISERFIKEYFYDAGTLGIEKADIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I + ++ GHAYE+N ++ FD S YG S++ +++ + G R+ + Sbjct: 113 VTENMAEIIAFVAKLVEKGHAYESNGDVYFDVSKYEEYGKLSKQSLEDLQAGARIEINEY 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + EP WESPWG GRPGWHIECSAM+ YLG+ DIHGGG DL+FPH Sbjct: 173 KKNPLDFALWKSAKAGEPSWESPWGNGRPGWHIECSAMAKRYLGETIDIHGGGGDLVFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C+ + K AN W+H G+LN++ +KMSKS NF T E+ E + Sbjct: 233 HENEIAQSEACSGK--KFANYWLHVGYLNVDNKKMSKSLNNFFTPREISE-------EFD 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWPQTSTSK----- 344 +R ML HYR PI+F+ L A E LL + S+ Sbjct: 284 LENLRFFMLSAHYRNPINFSRDLLEAAKNGLDRLYTGKNNLEYLLENAAEREVSEEEKNF 343 Query: 345 --GI--IDPAVLSALYNDLNTVSAIQALHKLARE-----STKNHD--LLPIFNASAHILG 393 G+ + A+ +D NT I + L RE S KN + ++ + G Sbjct: 344 IHGLQSFKNQFIDAVDDDFNTADGIAVIFDLVREINSHISEKNSKKAVEASYDLLMELTG 403 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + +++ IE+L+ ER K K F+ +D IR L+ KG +LED Sbjct: 404 VLGLLKREAEDLEEEIERLIAERQQARKDKNFALSDKIRDDLKEKGIVLED 454 >gi|319425887|gb|ADV53961.1| cysteinyl-tRNA synthetase [Shewanella putrefaciens 200] Length = 459 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 263/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHRDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ L +A L + T+ +D V Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFIAKF 342 Query: 353 -SALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILGI------EVC 397 +A+ +D NT A L + R + K L A +LG+ Sbjct: 343 KAAMDDDFNTPEAYSVLFDMVRDINRLKATDIAKASALAVAMKQLADVLGLLGQDPDAFF 402 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 K + + IE L+ ER K + +AD R +L+ G +LED G T W Sbjct: 403 KGEGSDDEVAEIEALIVERNRARSEKDWVAADVARNRLDILGVVLED------GPSGTTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|313499077|gb|ADR60443.1| CysS [Pseudomonas putida BIRD-1] Length = 460 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 180/467 (38%), Positives = 255/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR I+++ L +A+ L ++ P+ + G S A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L L RE + D L +LG+ + + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDVEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR QL + G +LED K Sbjct: 406 EGKVDAAEVEGLIQARLQARADKNWAESDRIRDQLTAMGVVLEDSKG 452 >gi|89093601|ref|ZP_01166548.1| Cysteinyl-tRNA synthetase, class Ia [Oceanospirillum sp. MED92] gi|89081997|gb|EAR61222.1| Cysteinyl-tRNA synthetase, class Ia [Oceanospirillum sp. MED92] Length = 461 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 180/469 (38%), Positives = 260/469 (55%), Gaps = 45/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL ++ + F I+ I+MYVCG TVYD HIG+AR M+ FDV+ R +R + Sbjct: 2 LQIYNTLTKEKSPFTPIEEGKIKMYVCGVTVYDLCHIGHARVMVAFDVITRFMRSQGWD- 60 Query: 65 CVTYVRNITDIDDKIIERARQ--EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRNITD+DDKII+RA + E P +T + +D RL+ L PT + Sbjct: 61 -VDYVRNITDVDDKIIKRAAENGEEPHE--------LTERMIAAMHEDEARLSVLRPTQE 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI +I L++ +I G AY AN ++ + +YG + + +DE K G R+ Sbjct: 112 PRATAHIGDIISLVETLIEKGFAYPAANGDVYYRVEKFADYGKLTNKNVDELKTGARIEV 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK + E W+SPWG+GRPGWHIECSAMS LG FDIHGGG DL Sbjct: 172 EEAKESPLDFVLWKSAKEGEVSWDSPWGKGRPGWHIECSAMSKCCLGNTFDIHGGGPDLP 231 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ N W+H G + + KMSKS GNF TI ++LE Sbjct: 232 FPHHENEIAQSEAANGC-TYVNTWMHAGPVRVNSEKMSKSLGNFFTIRDVLE-------K 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------LS 353 + A V+R + HYR ID++ L EA ++L ++ Q ++ + ++ Sbjct: 284 YNAEVVRFFLARVHYRTYIDYSEDSLKEARVMLERFYQALRGVDAVEGPLENDFEERFIA 343 Query: 354 ALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASAHILG--IEVCKEHLNKNI-- 405 A+ +D NT A+ + +L E K P A LG + + +++ ++ + Sbjct: 344 AMNDDFNTPKAVSVMFELVNELNKATREGASEAPALAAQLRKLGGMLGLLQQNADEFLQG 403 Query: 406 --------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + IE+L+ +R K K F+ AD IR L S+G IL+D + Sbjct: 404 ESEEGGLSNEEIEQLIVDRAEAKKAKNFAEADKIRDDLASQGIILKDSR 452 >gi|157690877|ref|YP_001485339.1| cysteinyl-tRNA synthetase [Bacillus pumilus SAFR-032] gi|187629792|sp|A8F962|SYC_BACP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157679635|gb|ABV60779.1| cysteine--tRNA ligase [Bacillus pumilus SAFR-032] Length = 466 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 174/487 (35%), Positives = 261/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL RK EF ++P ++MYVCGPTVY++ HIGNARP IV+D + + L Y Sbjct: 3 INIYNTLTRKKEEFVPLEPGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRKYLEY--SGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + +P I + Q + +D + L C PR Sbjct: 61 DVNFVSNFTDVDDKLIKAANELGEDVPT------IADRFIQAYFEDVSALGCKKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I+ +I G+AYEA+ ++ + T S YG S + IDE K G R+ Sbjct: 115 VTENMDDIIAFIETLIEKGYAYEADGDVYYSTRSFEGYGKLSHQSIDELKTGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KRDALDFALWKAAKNQEISWDSPWGEGRPGWHIECSAMVKKYLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+E KMSKS GNF+ ++++++ + Sbjct: 235 HENEIAQSEALTG-KPFAKYWMHNGYINIENEKMSKSLGNFVLVHDIVKEQ-------DP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID-------- 348 V+R ML HYR PI++++ L + ++ + +S I + Sbjct: 287 DVLRFFMLSVHYRHPINYSMDLLESTKSAFNRLKTSYANLHHRLESSTNITEDNAKWLAK 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHIL 392 +S + +D NT +AI L +LA+++ +H + +F +L Sbjct: 347 VEEQRATFISEMNDDFNTANAISVLFELAKQANYYMENDHTSEEVIKAFIGLFQEITSVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G + ++H + +E L+++R + + F+ +D IR QL+S +LED P Sbjct: 407 GFSLEEKH---TLEKEVEALIEQRNEARRNRDFALSDQIRDQLKSMNIVLED--TP---- 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|70727478|ref|YP_254394.1| cysteinyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] gi|109894948|sp|Q4L3I9|SYC_STAHJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68448204|dbj|BAE05788.1| cysteinyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] Length = 466 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 170/471 (36%), Positives = 259/471 (54%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ + S+P I + + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKELNESVPD------IADRYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKELVDEGYAYESDGDVYFRTRKFEGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA------ 350 V+R M+ HYR PI++ ++ + A+ L + + + + I+D + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVNAAKSGLERIRNSYQLIEERETIATDIVDQSKYIEQI 345 Query: 351 ------VLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D NT +A+ A + L++ + K ++ + +LG Sbjct: 346 DAIIEQFETVMDDDFNTANAVTAWYDLSKLANKYVLENNTSTQVISRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + IEKL++ER K K F+ AD IR L+ + ILED Sbjct: 406 VPLKGNKSDMLLDEDIEKLIEERNEARKNKDFARADEIRDMLKEQNIILED 456 >gi|85713337|ref|ZP_01044354.1| cysteinyl-tRNA synthetase [Idiomarina baltica OS145] gi|85692839|gb|EAQ30820.1| cysteinyl-tRNA synthetase [Idiomarina baltica OS145] Length = 460 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 173/482 (35%), Positives = 265/482 (54%), Gaps = 52/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F + + MYVCG T YD HIG+AR + FDV+ R LR + Sbjct: 3 LTLFNTLTREKETFTPREAGRVGMYVCGVTTYDLCHIGHARTYVAFDVVVRYLRKIGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII+RA + + +T + + +D L L P +PR Sbjct: 62 -VTYVRNITDLDDKIIKRAAEN------GEPFDALTQRYIDEMHRDFAALNLLEPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ +I +I++++ G+AY+A+N +++FD S+ +YG SR+ +++ + G RV + Sbjct: 115 VTQHMDDIIRMIESLVTQGYAYQADNGDVLFDVSTFDDYGRLSRQNLEQLQAGARVDVEA 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W+SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DL FP Sbjct: 175 SKLDPLDFVLWKKAKAGEPSWDSPWGEGRPGWHIECSAMNKAHLGETFDIHGGGSDLTFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA++ N W+H+G + ++ KMSKS GNF TI ++L ++ Sbjct: 235 HHENEIAQSCCANQT-NYVNYWMHSGMVQVDDVKMSKSLGNFFTIRDVL-------NAYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------AV 351 A +R +L +HYR +++T L +A L + + +G+ Sbjct: 287 AETVRYFLLSSHYRSQLNYTQDNLEQAHAALERL--YTALRGLTPEQPDENLRLPYWNQF 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVC 397 A+ +D N A+ L +L RE K D L + A +LG+ Sbjct: 345 TDAMNDDFNAPEAMSVLFELVREINKARDNDAERAAQLAHVLVELADVLGLLQQSPESFL 404 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +++ IE L+ +R K +++AD R +L G +LED G T+W Sbjct: 405 QGGADDEVAL-IEALIAQRNKARAEKDWAAADEARDRLTEMGIVLED------GANGTQW 457 Query: 458 KQ 459 ++ Sbjct: 458 RR 459 >gi|209527155|ref|ZP_03275668.1| cysteinyl-tRNA synthetase [Arthrospira maxima CS-328] gi|209492404|gb|EDZ92746.1| cysteinyl-tRNA synthetase [Arthrospira maxima CS-328] Length = 486 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 185/489 (37%), Positives = 263/489 (53%), Gaps = 64/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F ++P ++MY CG TVYD+ H+G+AR +DV+ R L + E Sbjct: 3 LKIYNTQTRQKETFTTLEPGKVKMYCCGVTVYDYCHLGHARSYTTWDVVRRYLEWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA+++ ++ ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRAKEQESTM------EAVSQRFIDAYFEDLRRLNVRDAKAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 T+HI ++ LI+ + GHAY + ++ ++ P+YG SRR++++ +MG RV Sbjct: 115 VTDHIKEIHQLIEQLTATGHAYAVDGDVYYNVGHFPDYGKLSRRQLEDLQMGASGRVAVA 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPETLKKKNPADFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMVRQLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELL+ Sbjct: 235 DLVFPHHENEIAQSEAATG-KTLARYWMHNGMVTVGGEKMSKSLGNFTTIRELLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSK-------W-PQTS 341 R V+RL +L HYR+P+DFT + + A+ +L ++ W +S Sbjct: 289 -RPVDPMVVRLFILQGHYRKPLDFTDEAIASAKNGWETLKDGLLFAEQYGARLGWSADSS 347 Query: 342 TSKGIIDPAVLS----ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------- 388 SK L A+ +D NT + L +LA+E + +LL + Sbjct: 348 PSKYDTTEDALQRFRVAMDDDFNTPGGLAVLFELAKELRRQGNLLAHEGKTDTPSDRIYA 407 Query: 389 --------AHILGIEVCKE----HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQL 435 A + G+E + + IS A IE LV++R K K ++ D IR QL Sbjct: 408 TWKTLVELAGVFGLEAVTQAQPPAATQGISDAEIEDLVKQRQSARKAKNYAEGDRIRDQL 467 Query: 436 ESKGFILED 444 ++ G L D Sbjct: 468 QANGVTLID 476 >gi|260549524|ref|ZP_05823742.1| cysteinyl-tRNA synthetase [Acinetobacter sp. RUH2624] gi|260407317|gb|EEX00792.1| cysteinyl-tRNA synthetase [Acinetobacter sp. RUH2624] Length = 473 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 193/477 (40%), Positives = 272/477 (57%), Gaps = 55/477 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWKR+ EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKRAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTST---SKGIIDP 349 VIR ++ +HYR P++F+ L EA+ L++ + QT+T +G I+ Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTETLDQGFIER 349 Query: 350 AVLSALYNDLNTVSAIQALHKLARE---------STKNHDLLPIFNASAHILGI------ 394 +A+ +D NT A+ L +L +E + + L +ILG+ Sbjct: 350 -FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRYLTNILGLVQHNVD 408 Query: 395 -----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ +E L + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 409 DFLKSDIGQEALALS-DAEIEDFIQQRVDAKKAKDFAKADAIRQSLLEQGVVLEDTR 464 >gi|304395563|ref|ZP_07377446.1| cysteinyl-tRNA synthetase [Pantoea sp. aB] gi|304356857|gb|EFM21221.1| cysteinyl-tRNA synthetase [Pantoea sp. aB] Length = 461 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 262/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + D L L P +PR Sbjct: 61 -LNYVRNITDIDDKIIKRANEN------GESIETLTNRMIGEMHNDFAALGILPPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I GHAY A+N +++FD S +YG+ SR+ +++ + G RV Sbjct: 114 ATRHIAEIIELVEKLIARGHAYVADNGDVMFDVLSDTDYGALSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPAWSSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 234 HHENEIAQSSCA-HDGPYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTS-----KGIIDPAVLSA 354 A +R ++ HYR +++ L +A E L + T +S + SA Sbjct: 286 AETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDSSVPASGGDAFEARFRSA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EV---CK 398 + +D NT A L +ARE H L A++LGI E+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKSEDGASAHALASKLREMANVLGILQQDPELFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +N IE V+ R K ++ AD R +L + G I+ED G + + W+ Sbjct: 406 AQVNDEEVAEIEHWVKARADARAAKAWAEADIARDKLNALGVIVED------GPQGSSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|269140042|ref|YP_003296743.1| cysteinyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|267985703|gb|ACY85532.1| cysteinyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|304559869|gb|ADM42533.1| Cysteinyl-tRNA synthetase [Edwardsiella tarda FL6-60] Length = 461 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY G + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYL-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + S +T + + +D L P +PR Sbjct: 61 -LKYVRNVTDVDDKIIKRALENKESC------EQLTERMLAEMHRDFDALNIARPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I HAY A+N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALVEQLIARDHAYVASNGDVMFAVDTDPDYGVLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGAYVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAV--------LSA 354 A +R ++ HYR ++++ + L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDAAAQPAADETFTARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D L AH+LG +E EH ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKGEDMAQASALAAQMRGLAHVLGLLEQTPEHFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+++R K ++ AD R L + G +LED G + T W+ Sbjct: 406 AAAGDDEVAQIEALIKQRNDARAAKAWALADEARDSLNAMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|254496542|ref|ZP_05109412.1| cysteine tRNA synthetase [Legionella drancourtii LLAP12] gi|254354241|gb|EET12906.1| cysteine tRNA synthetase [Legionella drancourtii LLAP12] Length = 455 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 186/473 (39%), Positives = 267/473 (56%), Gaps = 40/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R F +I+P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRTKEPFVSINPGKIGMYVCGITVYDHCHLGHARSMVCFDVIVRYLRSQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII RA + IPI++ +T+ +D L L P ++PR Sbjct: 61 -VTFVRNITDIDDKIIARANER--GIPIDE----LTAHYIDAMHEDMRALNILPPNYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LI+ ++ G+AY ++N ++ + S YG S + ++ G RV Sbjct: 114 ATEHIATIIRLIERLLARGNAYVSDNGDVCYQVDSFAEYGKLSHKDLEGLMSGARVEVVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPYWASPWGNGRPGWHIECSAMAIEELGEHFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + KMSKS GNF TI ++L Sbjct: 234 HHENEIAQSEAATH-KPFANYWLHVGMLQVNNEKMSKSLGNFFTIADVLAKHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-----TSKGIIDPAVLS----A 354 V+R +L +HYR ++++ + L A+ L++ QT T G +D ++ A Sbjct: 286 PEVVRYFLLSSHYRSSLNYSEENLFNAKKALTRLYQTMKDSPVTVNGELDNHWINEFNKA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI------EVCKEHLNKNIS 406 + +D N+ A+ L +L+ E KN L A ++G+ E + +++ Sbjct: 346 MNDDFNSPVALSVLFQLSHEVNKNGTPVLATTLKHLAGLMGLLQSDSAEFLQAGFDEDDK 405 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 AIE+L+ ERL + + AD IR +L ++G LED G + T W++ Sbjct: 406 AAIEQLIAERLQARADRNWERADQIRAELLNQGIELED------GAKGTTWRK 452 >gi|256846544|ref|ZP_05552001.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] gi|256718313|gb|EEU31869.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] Length = 473 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 274/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT+++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NISIKEIAERYIKAYFEDTSKINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKKDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSKKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENERAQSKCGCG-GTFARYWMHNGYININGEKMSKSSGSFVLLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGI------- 346 VIRL +L +HYR+P++F+ L + + L + T KGI Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDAELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 I+ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEIEAKFIEAMDEDFNTAQALGYIFELVKAVNKTLDEVNISKKGLEVIDEVYSYLVM 405 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|251809946|ref|ZP_04824419.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|282875020|ref|ZP_06283895.1| cysteine--tRNA ligase [Staphylococcus epidermidis SK135] gi|251806489|gb|EES59146.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|281296348|gb|EFA88867.1| cysteine--tRNA ligase [Staphylococcus epidermidis SK135] gi|329734647|gb|EGG70954.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU028] Length = 466 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 265/471 (56%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + S + S I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQHI 345 Query: 348 DPAV---LSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+T + +L +++ + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I + + ++ + IE+L++ER K K F+ AD IR L+++ ILED Sbjct: 406 IPLKSKETDELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILED 456 >gi|283784327|ref|YP_003364192.1| cysteinyl-tRNA synthetase [Citrobacter rodentium ICC168] gi|282947781|emb|CBG87337.1| cysteinyl-tRNA synthetase [Citrobacter rodentium ICC168] Length = 461 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPSYGQLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKTVAPAGGEAFEARFIDA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNK--------- 403 + +D NT A L +ARE KN D+ ++H+ I L + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKNEDMAAANAMASHLRKISAVLGLLEQEPEAFLQSG 405 Query: 404 ----NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAQIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|163751990|ref|ZP_02159201.1| cysteinyl-tRNA synthetase [Shewanella benthica KT99] gi|161328148|gb|EDP99315.1| cysteinyl-tRNA synthetase [Shewanella benthica KT99] Length = 459 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/488 (38%), Positives = 272/488 (55%), Gaps = 62/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ + P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKIGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRAAEN------NESCKSLTERLIGEMHRDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I +AY ++N +++F SS YG S + I++ + G RV + Sbjct: 114 ATQHMPEIIDMVEKLIEKEYAYVSDNGDVLFSVSSFAEYGRLSGQNIEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVL-------KHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPAVLS------- 353 A IR +L HYR ++++ L +A+ L + ++ KG+ ++PA S Sbjct: 286 AGTIRYFLLSGHYRSQLNYSEDNLKQAKSALDRL--YTSLKGLDLNVEPADASEFVVKFK 343 Query: 354 -ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKE------HLNKN 404 A+ +D NT A L + RE K DL A A +G+++ KE L+++ Sbjct: 344 AAMDDDFNTPEAYSVLFDMVREINRVKGSDL-----AQASAMGVKL-KELAGVLGLLDQD 397 Query: 405 ISI------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + I IE L+ ER K + +AD R L + G ILED G Sbjct: 398 VDIFFKGEGSDDEVAQIEALIVERNRARAEKDWPAADVARDGLNALGVILED------GP 451 Query: 453 RMTRWKQK 460 T W++K Sbjct: 452 SGTTWRKK 459 >gi|171463666|ref|YP_001797779.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229470557|sp|B1XUY8|SYC_POLNS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171193204|gb|ACB44165.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 473 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 197/485 (40%), Positives = 263/485 (54%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ I P ++MYVCG TVYDF HIG+AR MIVFD++ R LR E Sbjct: 2 LQIYNTLSRSKQVFKPIVPGKVKMYVCGMTVYDFCHIGHARVMIVFDMVVRWLRASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA I + IS +T++ D+ L + P +PR Sbjct: 61 -VLYVRNITDIDDKIINRA------IENGEPISALTNRFVDAMHADSDELGLMHPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I QM +I +I + AY+AN+ ++ F +P YG S + +DE G RV Sbjct: 114 ATDYIAQMQGMIGKLIENELAYQANDGDVNFAVRLLPRYGQLSGKTLDELNAGERVAVGD 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 174 GKRDPLDFVLWKSAKPEEPADTRWKSPWGEGRPGWHIECSAMSCDLLGEHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCA----DRIEKTA---NIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 FPHHENEIAQS A DR A N W+HNG + + KMSKS GNF I ++L Sbjct: 234 QFPHHENEIAQSEGALYGKDRKVDDAPFVNYWMHNGHIRVNEEKMSKSLGNFFLIRDVL- 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTST-SKG 345 +S+ VIR ML THYR PI+++ +L EA L++ + T S G Sbjct: 293 ------KSFDPEVIRFFMLKTHYRSPINYSDAQLEEARSGLVRLYTALAQGSKAQTISLG 346 Query: 346 IIDP---AVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGI 394 +P A+ +D NT AI L + E + ++L AS + L Sbjct: 347 SSNPWAKRFADAMNDDFNTPEAIAVLFDIVSEVNRAQGEEKQVLANILKALGASLNFLQR 406 Query: 395 E---VCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + + ++ IE+ + R+ + K F+ AD IRK L +G +LED Sbjct: 407 DPTVFLQSSAKDQAGLSPEQIEEQIAARVAAKQAKDFAKADAIRKALLEQGIVLEDKPGG 466 Query: 449 DNGQR 453 G R Sbjct: 467 LTGWR 471 >gi|117617683|ref|YP_857264.1| cysteinyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559090|gb|ABK36038.1| cysteinyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 458 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 182/463 (39%), Positives = 259/463 (55%), Gaps = 39/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + + +D +T++ D L + P +PR Sbjct: 61 -LNYVRNVTDVDDKIIKRAAE--TGVTCDD----LTARLIGDMHADFDALGMVRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+Q+++ HAY A+N +++F S +YG S + +++ + G RV Sbjct: 114 ATQHIGEIIELVQSLLDKEHAYVADNGDVMFIVDSYADYGKLSGQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPLDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGGDYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVL-SAL 355 A +R ++ HYR ++++ L +A L + P + + G A A+ Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPAAAAAGGDEQVARFKEAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILGI-----EVCKEHLN 402 +D NT A AL L RE K D+ A +LGI E + Sbjct: 346 DDDFNTPEAYSALFDLVREINRQKGEDMAVAAALGARLRELGAVLGILQQDPEAFLKGDE 405 Query: 403 KNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +A IE+L+ +R K +++AD R +L G +LED Sbjct: 406 ADEEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLED 448 >gi|256028172|ref|ZP_05442006.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11] gi|289766105|ref|ZP_06525483.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11] gi|289717660|gb|EFD81672.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11] Length = 472 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 274/482 (56%), Gaps = 56/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIENVSI------KEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RAT++I +MI +IQ +I G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 RATDNIDEMIKIIQALIDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKRDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGNSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++ + G KMSKS G+F+ + ++L K F GR Sbjct: 234 PHHENEMAQSKCACG-GTFARYWMHNGYIKINGEKMSKS-GSFVLLRDIL--KHFEGR-- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P+DF+ + L + + L + T Sbjct: 288 ---VIRLFVLGSHYRKPMDFSDEELNQTKSSLERIENTLKRIKELDRENIKGTDDCQELL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS------------- 388 +K ++ + A+ D NT A+ + +L + K D I Sbjct: 345 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEANISKKGLEVIDEVYSYLVM 404 Query: 389 --AHILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 ++LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 405 IIQNVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 464 Query: 446 KN 447 K+ Sbjct: 465 KD 466 >gi|255585350|ref|XP_002533372.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223526794|gb|EEF29017.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] Length = 530 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 184/439 (41%), Positives = 253/439 (57%), Gaps = 45/439 (10%) Query: 1 MKKKI--KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR 58 M KK+ K+YNT+ R++ F+ P + MYVCG T Y F+HIG+AR ++FDVL+R L+ Sbjct: 1 MAKKVEFKLYNTMNRQLEAFKPHVPGKVGMYVCGVTAYAFSHIGHARAAVIFDVLFRYLQ 60 Query: 59 YYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 + E VTY RN TDIDDKII+RA + D S+ +S+ ++++ D L CL Sbjct: 61 HLGYE--VTYARNFTDIDDKIIKRANESG-----EDPFSL-SSRFCEEYLVDMDSLQCLR 112 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PTHQPR T+HI Q+ +I II +G AY + ++ F PNYG S +K++ + G R Sbjct: 113 PTHQPRVTDHIEQIKDMITQIINNGFAYPSEGDVFFAVDKFPNYGQLSGQKLENHRAGER 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P+ K+NPADF LWK + P EP WESPWG GRPGWHIECSAMS+ YL FDIHGGG Sbjct: 173 NPDT-RKRNPADFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTFKFDIHGGGS 231 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEI QS A + E + WIHNG + KMSKS GN+ TI E+ E Sbjct: 232 DLIFPHHENEITQSAAACQ-ESNVSYWIHNGHVTNNNEKMSKSLGNYFTIREVTE----- 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSK 344 R P V R ++ HYR P+++TV Q L + E LS + S + Sbjct: 286 -RYHPLAV-RHFLISAHYRSPLNYTVFQLESASDAIFYIYQTLQDCEDALSMFQDGSLKE 343 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHIL--GIEVCKEHL 401 G + + + T A + ++KL E TK D L +++HIL + + + Sbjct: 344 GAAQNSKVVGI-----TADAKKCINKLRDEFETKMSDDL----STSHILTGAFQDALKFI 394 Query: 402 NKNISIAIEKLVQERLILL 420 N +IS+ +KL + + + L Sbjct: 395 NSSISMLKKKLQKPQQLSL 413 >gi|260779213|ref|ZP_05888105.1| cysteinyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450] gi|260605377|gb|EEX31672.1| cysteinyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450] Length = 460 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 184/481 (38%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I+ + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPINAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + S +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANENGESC------DSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATEFIAEIIELVEKLIERGFAYVADNGDVMFEVGQFDEYGKLSKQDLDQLQAGARVDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQ-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLTVPAAGGEEYVKRFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE KN +L + A ++GI K Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRIKNDNLEQASAMGSLMRELADVIGILHQEPEAFLKGD 405 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +A IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEGLIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|270157070|ref|ZP_06185727.1| cysteinyl-tRNA synthetase [Legionella longbeachae D-4968] gi|269989095|gb|EEZ95349.1| cysteinyl-tRNA synthetase [Legionella longbeachae D-4968] Length = 464 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 186/475 (39%), Positives = 265/475 (55%), Gaps = 44/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R F +I P I +YVCG TVYD HIG+AR M+ FDV+ R LR + Sbjct: 12 LHLYNSLTRTKEPFVSISPGKIGIYVCGITVYDRCHIGHARSMVAFDVIVRYLRSQGYD- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII RA + +IPI++ +T++ +DT L L P +PR Sbjct: 71 -VKYIRNITDIDDKIIARAHER--AIPIDE----LTAQYIAAMNEDTQALNILPPDVEPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I+LI+ ++ G+AY ++N ++ + +S +YG S + ++ G RV Sbjct: 124 ATDHIHSIIHLIERLLAKGNAYLSDNGDVCYQVNSFADYGKLSNKDLEGLMAGARVEIVK 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGGLDL FP Sbjct: 184 EKRSPLDFVLWKKAKQGEPSWPSPWGEGRPGWHIECSAMAMSELGEQFDIHGGGLDLQFP 243 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + KMSKS GNF TI ++L + P Sbjct: 244 HHENEIAQSEAATE-KPFANYWLHVGMLQVNNEKMSKSLGNFFTIADVL------AKHHP 296 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------A 354 V+R +L +HYR ++++ + L A+ L++ QT I L A Sbjct: 297 -EVVRYFLLSSHYRSSLNYSEENLANAKKALTRLYQTIKDSRFIADGELDNHWINEFNQA 355 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG----------IEVCKEHLNKN 404 + +D NT A+ + +L+ E K++ PI A+ LG + L+ Sbjct: 356 MNDDFNTPVALSVMFQLSHEVNKSNS--PILAATLKYLGNTMGLLLTDPSSFLQSGLDDE 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +IE+L+ ERL + + AD IR L S+G LED G T W++ Sbjct: 414 DKASIEQLINERLQARTERNWERADQIRADLLSRGIELED------GANGTTWRK 462 >gi|167033877|ref|YP_001669108.1| cysteinyl-tRNA synthetase [Pseudomonas putida GB-1] gi|187629853|sp|B0KUU0|SYC_PSEPG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166860365|gb|ABY98772.1| cysteinyl-tRNA synthetase [Pseudomonas putida GB-1] Length = 460 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 254/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR + Sbjct: 2 LTIYNTLSKAKETFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR I+++ L +A+ L ++ P+ + G S A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSMAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L L RE + D L +LG+ + + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDLEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR QL + G +LED K Sbjct: 406 EGKVDAAEVEGLIQARLQARTDKNWAESDRIRDQLTAMGVVLEDSKG 452 >gi|104781222|ref|YP_607720.1| cysteinyl-tRNA synthetase [Pseudomonas entomophila L48] gi|123079208|sp|Q1IBP9|SYC_PSEE4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|95110209|emb|CAK14916.1| cysteinyl-tRNA synthetase [Pseudomonas entomophila L48] Length = 460 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 176/467 (37%), Positives = 256/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D +N+RMYVCG TVYD+ H+G+ R M+ FD++ R LR Sbjct: 2 LTIYNTLSKTKETFKPLDGNNVRMYVCGMTVYDYCHLGHGRSMVAFDLITRWLRK--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T++ +D RL+ L P +PR Sbjct: 60 ALTYVRNITDIDDKIINRANEN------GESFDALTARMIDAMHEDERRLSILKPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRKKIEDLRIGARIEVGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGAKPGEPFWDSPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KPYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKG-IIDPAVLSAL 355 V+R ++ +HYR I+++ L +++ L ++ P+ + G A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDSKGALERFYHALRGLPRVAAKGGEAFVERFTVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L L RE + + L +LG+ E + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRESDVEAAAGLAGRLRELGDVLGVLQLDADEFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR Q+ + G +LED K Sbjct: 406 EGKVDAAQVEALIQARLQARADKNWAESDRIRDQITAMGVVLEDGKG 452 >gi|238920879|ref|YP_002934394.1| cysteinyl-tRNA synthetase, [Edwardsiella ictaluri 93-146] gi|259511831|sp|C5B8V6|SYC_EDWI9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|238870448|gb|ACR70159.1| cysteinyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146] Length = 461 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 263/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY G + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYL-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + S +T + + +D L P +PR Sbjct: 61 -LKYVRNVTDVDDKIIKRALENQESC------EQLTERMLAEMHRDFDALNIARPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I HAY A+N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALVEQLIARDHAYVASNGDVMFAVDTDPDYGVLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGAYVNCWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T+ +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDVAAQPTADETFTTRFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D L AH+LG +E EH ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKGEDMAQANALAAQMRGLAHVLGLLEQTPEHFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+++R K ++ AD R L + G +LED G + T W+ Sbjct: 406 AAAGDDEVAQIEALIRQRNDARAAKAWALADEARDSLNAMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|258591299|emb|CBE67598.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [NC10 bacterium 'Dutch sediment'] Length = 530 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 158/321 (49%), Positives = 202/321 (62%), Gaps = 16/321 (4%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL +K F+ P +RMY CGPTVYD AHIG+AR + FDV++R L G K V Sbjct: 5 VYNTLHQKKERFEPAVPGEVRMYACGPTVYDRAHIGHARAALTFDVVWRYLERR-GYK-V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +YVRN TD+DDKII+RA + + + + + + + +D L PT +PRAT Sbjct: 63 SYVRNYTDVDDKIIQRAAE------LGQSRESLVEEQIEAYRRDMDALGLRTPTEEPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HI +MI +I+ ++ G AY + ++ F+ +YG S R +DE + G RV K+ Sbjct: 117 RHIREMIEIIRTLMAKGVAYSVDGDVYFEVRRSSDYGKLSHRGLDELQAGARVEVDPRKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF LWK S P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DLIFPHHE Sbjct: 177 DPLDFALWKASRPGEPAWESPWGPGRPGWHIECSAMSMKYLGETFDIHGGGADLIFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS CA + A WIHNGF+N+ KMSKS GN +TI ELL GR P Sbjct: 237 NEIAQSECATG-KPFARYWIHNGFVNIRAEKMSKSLGNILTIRELL------GRISPC-A 288 Query: 307 IRLAMLMTHYREPIDFTVQRL 327 +L +L THYR P++F+ L Sbjct: 289 FKLFLLGTHYRAPVEFSEDAL 309 >gi|319946262|ref|ZP_08020502.1| cysteine--tRNA ligase [Streptococcus australis ATCC 700641] gi|319747644|gb|EFV99897.1| cysteine--tRNA ligase [Streptococcus australis ATCC 700641] Length = 450 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 184/473 (38%), Positives = 252/473 (53%), Gaps = 41/473 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMSRDLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + P + K F +D T L T Sbjct: 61 GYE--VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 PR + +I + ++I G+AYE+ ++ F NY + + +++ ++G Sbjct: 113 RHPRVVEFMDDIIRFVTDLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGR 172 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E WESPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEVSWESPWGPGRPGWHIECSVMSTGILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTID 290 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL-- 352 V+R HYR+PI+FT + + +AE L T G +DPA L Sbjct: 291 -------GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGEVDPADLQS 343 Query: 353 ------SALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNK 403 +A+ D+N + I + +LA+ H D+ + GI +E L Sbjct: 344 FVDKFVAAMDEDINAANGITVVFELAKWINSGHYDQDVKEALAKMLEVFGIVFVEEVLAA 403 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IE L+ ER K F+ AD IR QL ++G L D K G R TR Sbjct: 404 D----IEALIAERQEARANKDFARADEIRDQLAAQGIKLLDTK---EGVRWTR 449 >gi|74311083|ref|YP_309502.1| cysteinyl-tRNA synthetase [Shigella sonnei Ss046] gi|109894944|sp|Q3Z4P5|SYC_SHISS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|73854560|gb|AAZ87267.1| cysteine tRNA synthetase [Shigella sonnei Ss046] gi|323163965|gb|EFZ49773.1| cysteinyl-tRNA synthetase [Shigella sonnei 53G] Length = 461 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 272/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYAADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + ++ + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTEKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|289164517|ref|YP_003454655.1| cysteine tRNA synthetase [Legionella longbeachae NSW150] gi|288857690|emb|CBJ11533.1| cysteine tRNA synthetase [Legionella longbeachae NSW150] Length = 454 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 185/475 (38%), Positives = 263/475 (55%), Gaps = 44/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R F +I P I +YVCG TVYD HIG+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRTKEPFVSISPGKIGIYVCGITVYDRCHIGHARSMVAFDVIVRYLRSQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII RA + +IPI++ +T++ +DT L L P +PR Sbjct: 61 -VKYIRNITDIDDKIIARAHER--AIPIDE----LTAQYIAAMNEDTQALNILPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I+LI+ ++ G+AY ++N ++ + +S +YG S + ++ G RV Sbjct: 114 ATDHIHSIIHLIERLLAKGNAYLSDNGDVCYQVNSFADYGKLSNKDLEGLMAGARVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKQGEPSWPSPWGEGRPGWHIECSAMAMSELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + KMSKS GNF TI ++L Sbjct: 234 HHENEIAQSEAATE-KPFANYWLHVGMLQVNNEKMSKSLGNFFTIADVLAKHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------A 354 V+R +L +HYR ++++ + L A+ L++ QT I L A Sbjct: 286 PEVVRYFLLSSHYRSSLNYSEENLANAKKALTRLYQTIKDSRFIADGELDNHWINEFNQA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG----------IEVCKEHLNKN 404 + +D NT A+ + +L+ E K++ PI A+ LG + L+ Sbjct: 346 MNDDFNTPVALSVMFQLSHEVNKSNS--PILAATLKYLGNTMGLLLTDPSSFLQSGLDDE 403 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +IE+L+ ERL + + AD IR L S+G LED G T W++ Sbjct: 404 DKASIEQLINERLQARTERNWERADQIRADLLSRGIELED------GANGTTWRK 452 >gi|24373357|ref|NP_717400.1| cysteinyl-tRNA synthetase [Shewanella oneidensis MR-1] gi|30316159|sp|Q8EG22|SYC_SHEON RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24347617|gb|AAN54844.1|AE015623_6 cysteinyl-tRNA synthetase [Shewanella oneidensis MR-1] Length = 459 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 186/484 (38%), Positives = 262/484 (54%), Gaps = 54/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I+P + MYVCG TVYD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITDIDDKII+RA + + + +T + + KD L P +PR Sbjct: 61 -VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A+ +++F +S P YG S + +++ + G RV Sbjct: 114 ATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLS-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR I+++ + L +A L + T+ +D V Sbjct: 286 AETVRYFLLSGHYRSQINYSEENLKQARAALER---LYTAIKDVDLTVAAAPAEEFVAKF 342 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS---------AHILGI------EV 396 +A+ +D NT A L + RE + L + AS A +LG+ Sbjct: 343 KAAMDDDFNTPEAYSVLFDMVREINR-LKLTDMAEASALAVSMKQLADVLGLLHQSPDAF 401 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 K + + IE L+ ER K + +AD R +L G +LED G T Sbjct: 402 FKGEGSDDEVAEIEALIVERNRARTEKDWPAADVARNRLNELGVVLED------GPSGTT 455 Query: 457 WKQK 460 W++K Sbjct: 456 WRKK 459 >gi|194017569|ref|ZP_03056180.1| cysteinyl-tRNA synthetase [Bacillus pumilus ATCC 7061] gi|194010841|gb|EDW20412.1| cysteinyl-tRNA synthetase [Bacillus pumilus ATCC 7061] Length = 466 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 174/487 (35%), Positives = 260/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL RK EF ++P ++MYVCGPTVY++ HIGNARP IV+D + + L Y Sbjct: 3 INIYNTLTRKKEEFVPLEPGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRKYLEY--SGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + +P I + Q + +D + L C PR Sbjct: 61 DVNFVSNFTDVDDKLIKAANELGEDVPT------IADRFIQAYFEDVSALGCKKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I +I G+AYEA+ ++ + T S YG S + IDE K G R+ Sbjct: 115 VTENMDDIIAFIATLIEKGYAYEADGDVYYSTRSFEGYGKLSHQSIDELKTGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KRDALDFALWKAAKDQEISWDSPWGEGRPGWHIECSAMVKKYLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+E KMSKS GNF+ ++++++ + Sbjct: 235 HENEIAQSEALTG-KPFAKYWMHNGYINIENEKMSKSLGNFVLVHDIVKEQ-------DP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID-------- 348 V+R ML HYR PI++++ L + ++ + +S I + Sbjct: 287 DVLRFFMLSVHYRHPINYSMDLLESTKSAFNRLKTSYANLHHRLESSTNITEDNAEWLAK 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHIL 392 +S + +D NT +AI L +LA+++ +H + +F +L Sbjct: 347 VEEQRATFISEMNDDFNTANAISVLFELAKQANYYMENDHTSEEVIKAFIGLFQEITSVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G + ++H + +E L+++R + + F+ +D IR QL+S +LED P Sbjct: 407 GFSLEEKH---TLDEEVEALIEKRNEARRNRDFALSDQIRDQLKSMNIVLED--TP---- 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|27467210|ref|NP_763847.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57866107|ref|YP_187766.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|242241861|ref|ZP_04796306.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis W23144] gi|30316150|sp|Q8CTU1|SYC_STAES RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216111|sp|Q5HRM3|SYC_STAEQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|27314752|gb|AAO03889.1|AE016744_292 cysteinyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57636765|gb|AAW53553.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|242234639|gb|EES36951.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis W23144] Length = 466 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 264/471 (56%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + S + S I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQQI 345 Query: 348 DPAV---LSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+T + +L +++ + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IE+L++ER K K F+ AD IR L+++ ILED Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILED 456 >gi|323938475|gb|EGB34726.1| cysteinyl-tRNA synthetase [Escherichia coli E1520] Length = 461 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA K N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGKYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|308185969|ref|YP_003930100.1| Cysteinyl-tRNA synthetase [Pantoea vagans C9-1] gi|308056479|gb|ADO08651.1| Cysteinyl-tRNA synthetase [Pantoea vagans C9-1] Length = 500 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 188/485 (38%), Positives = 263/485 (54%), Gaps = 48/485 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 38 RSMLKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLG 97 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + + YVRNITDIDDKII+RA + ++I +T++ + D L L P Sbjct: 98 YQ--LNYVRNITDIDDKIIKRANEN------GESIETLTNRMIGEMHNDFAALGILPPDE 149 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI ++I L+Q +I HAY A+N +++FD S +YG+ SR+ +++ + G RV Sbjct: 150 EPRATRHIAEIIELVQTLIARNHAYVADNGDVMFDVLSDTDYGALSRQDLEQLQAGARVE 209 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL Sbjct: 210 VADVKRNPMDFVLWKMSKADEPAWSSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDL 269 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA N W+H+G + ++ KMSKS GNF T+ ++L+ Sbjct: 270 MFPHHENEIAQSSCA-HDGPYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ------- 321 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTS-----KGIIDPAV 351 + A +R ++ HYR +++ L +A E L + T +S + Sbjct: 322 HYDAETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDSSVKAHGGEAFEARF 381 Query: 352 LSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI-----EV-- 396 SA+ +D NT A L +ARE + H L A++LGI E+ Sbjct: 382 RSAMDDDFNTPEAYSVLFDMAREVNRLKSEDGASAHGLASKLREMANVLGILQQDPELFL 441 Query: 397 -CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +N IE V+ R K ++ AD R +L + G I+ED G + + Sbjct: 442 QSGAQVNDEEVAEIEHWVKARADARAAKAWAEADIARDKLNALGVIVED------GPQGS 495 Query: 456 RWKQK 460 W++K Sbjct: 496 SWRRK 500 >gi|77360989|ref|YP_340564.1| cysteinyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] gi|109894923|sp|Q3IF51|SYC_PSEHT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|76875900|emb|CAI87121.1| cysteine tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] Length = 459 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 263/467 (56%), Gaps = 46/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ +F+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ + Sbjct: 2 VNIYNTLTRQKEQFKPMVEGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + SI ND +T + T+ +D L L P +P Sbjct: 61 -LKYVRNITDVDDKIIKRANENGESI--ND----LTVRMTKAMHEDFDSLNMLRPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +++ +I GHAY A+ +++FD S+ YG+ S++ + + G+RV Sbjct: 114 VTAHMDEIIEMVERLITKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECSAMSS +LG+ FDIHGGG DL FP Sbjct: 174 DKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ K N WIH G + + KMSKS NF T+ E+L + + Sbjct: 234 HHENEIAQSCCANN-GKYVNTWIHTGMVQVNKEKMSKSLDNFFTVREVL-------KQYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 A +R ++ HYR ++++ + L +A S + T+ ++P Sbjct: 286 AESVRYFLISGHYRSQLNYSQENLDQAR---SSLERIYTALRGVEPVACELDDNEYVIKF 342 Query: 354 --ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCK 398 A+ +D NT A+ L +LA+E S + L I + + +LG+ E Sbjct: 343 RKAMDDDFNTPEALPVLFELAKELNLVKDIDSQQAGQLAFILGSISEVLGVAQQDPEAFL 402 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + +A IE L+ +R K +++AD R L + G ILED Sbjct: 403 QGGQDDDEVAQIEALIVKRNDARASKNWAAADEARDALSALGVILED 449 >gi|319891494|ref|YP_004148369.1| Cysteinyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] gi|317161190|gb|ADV04733.1| Cysteinyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] gi|323465335|gb|ADX77488.1| cysteinyl-tRNA synthetase [Staphylococcus pseudintermedius ED99] Length = 466 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 263/472 (55%), Gaps = 49/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ FQ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKEVFQPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ ++P I + Q F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKLIKRSQELGETVPE------IAERYIQAFYEDTEALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+ ++ G+AYE+ ++ F T +YG S + ID+ K+G R+ + + Sbjct: 114 VMDHMDDIIKFIKKLVDEGYAYESGGDVYFRTRQFEDYGKLSHQSIDDLKVGARIEQGEN 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFEKLGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + E AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNH-ETFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTV-----------------QRLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ + Q LTE E + + +T I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVEAARSGLERIRNSYQALTERETVATDLTNDATMLTQI 345 Query: 348 DPAVL----SALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHIL 392 D A+L + + +D NT +AI A + L + + K +F + +L Sbjct: 346 D-AILTQFETVMDDDFNTANAITAWYDLVKLANKYLLEDNTSTQVIQRFKEVFAIFSDVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G+ + H+ + IE+L++ER + K ++ AD IR QL+++ ILED Sbjct: 405 GVPLTSNHVEGLLDEEIERLIEERNAARQAKDYARADEIRDQLKAQNIILED 456 >gi|26989624|ref|NP_745049.1| cysteinyl-tRNA synthetase [Pseudomonas putida KT2440] gi|37999406|sp|Q88IU4|SYC_PSEPK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24984507|gb|AAN68513.1|AE016483_4 cysteinyl-tRNA synthetase [Pseudomonas putida KT2440] Length = 460 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 254/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR++I++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKRIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR I+++ L +A+ L ++ P+ + G S A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L L RE + D L +LG+ + + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDVEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR QL + G +LED K Sbjct: 406 EGKVDAAEVEGLIQARLKARADKNWAESDRIRDQLTAMGVVLEDSKG 452 >gi|15612674|ref|NP_240977.1| cysteinyl-tRNA synthetase [Bacillus halodurans C-125] gi|11387138|sp|Q9KGF4|SYC_BACHD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|10172723|dbj|BAB03830.1| cysteinyl-tRNA synthetase [Bacillus halodurans C-125] Length = 466 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 183/488 (37%), Positives = 263/488 (53%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++N+L RK F ++ ++MYVCGPTVY++ HIGNARP IV+D++ R L+Y E Sbjct: 3 IQVFNSLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPPIVYDMIRRYLKYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + ++ + + +DT+ L L H PR Sbjct: 62 -VLFVSNFTDVDDKIIRVANE------LGEDVFAVANRFIEAYKQDTSALGVLEADHHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++I I+ + G+AYE ++ F T YG S + ID+ G R+ Sbjct: 115 VTETMSEIISFIRVLEEKGYAYEQGGDVYFRTRKFKEYGKLSAQSIDDLLSGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKAAKEGEVSWDSPWGKGRPGWHIECSAMVKKYLGDTIDIHAGGQDLKFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + AN W+HNGF+NL+ KMSKS GN + NE++ R A Sbjct: 235 HENEIAQSECMTG-KPMANYWLHNGFINLDNEKMSKSLGNVVLANEMI-------RQHSA 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAV--- 351 V+R ML HYR PI+F+ ++RL A L Q S G +P + Sbjct: 287 EVLRFFMLSAHYRSPINFSDELLEGAKRGLERLQTAVSSLVHRLQESADFGGTEPWLERI 346 Query: 352 -------LSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D N+ + I L LA+E+ + + +FN +LG Sbjct: 347 DEFRGRFIEEMDDDFNSANGIAVLFDLAKEANRYLREEQTSKAVLQSFIDLFNELGGVLG 406 Query: 394 IEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 + + + E L++ I IE+ + R K K F AD IR QL+++G ILED P Sbjct: 407 VTLNRQEELLDEEIERLIEERNEAR----KAKNFQRADDIRDQLKAEGIILED--TPQG- 459 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 460 ---VRWKR 464 >gi|218547963|ref|YP_002381754.1| cysteinyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] gi|226735060|sp|B7LJI4|SYC_ESCF3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218355504|emb|CAQ88115.1| cysteinyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] gi|324113037|gb|EGC07013.1| cysteinyl-tRNA synthetase [Escherichia fergusonii B253] Length = 461 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 272/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D++ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMVAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|212636030|ref|YP_002312555.1| cysteinyl-tRNA synthetase [Shewanella piezotolerans WP3] gi|226735064|sp|B8CRG0|SYC_SHEPW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212557514|gb|ACJ29968.1| Cysteinyl-tRNA synthetase [Shewanella piezotolerans WP3] Length = 459 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 186/481 (38%), Positives = 262/481 (54%), Gaps = 48/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKLYNTLTRQKEQFVPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCDSLTERLIGEMHRDFDSLNMARPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I HAY AN +++F SS P YG S + +++ + G RV + Sbjct: 114 ATLHMPEIIEMVEKLIAREHAYVAANGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRDPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA K N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-KYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R +L HYR ++++ + L +A+ L + + +D A A Sbjct: 286 AATVRYFLLSGHYRSQLNYSEENLKQAKSGLERIYTALKDLDLTVDAAPAEAFIAQFKRA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------HILGIEV---CKE 399 + +D NT A L ++ RE + L + ASA ILG +V K Sbjct: 346 MDDDFNTPEAYSVLFEMVREINR-LKLTDMQQASALGVALKQLADVLGILGQDVDTFFKG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+ ER K + +AD R L + G ILED G T W++ Sbjct: 405 EGSDDEVAEIEALIVERNRARTEKDWPAADVARDGLNALGVILED------GPEGTTWRK 458 Query: 460 K 460 K Sbjct: 459 K 459 >gi|260582005|ref|ZP_05849800.1| cysteinyl-tRNA synthetase [Haemophilus influenzae NT127] gi|260094895|gb|EEW78788.1| cysteinyl-tRNA synthetase [Haemophilus influenzae NT127] Length = 459 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 267/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGADQSAVAFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKAEDVEKANGLAARLRELGAILGLLQQEPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSNDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|148653067|ref|YP_001280160.1| cysteinyl-tRNA synthetase [Psychrobacter sp. PRwf-1] gi|187629854|sp|A5WEW9|SYC_PSYWF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148572151|gb|ABQ94210.1| cysteinyl-tRNA synthetase [Psychrobacter sp. PRwf-1] Length = 505 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 192/505 (38%), Positives = 261/505 (51%), Gaps = 69/505 (13%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIY+++ F+ + I MYVCG TVYD+ HIG+AR M+ FDV+ R LR+ Sbjct: 22 QAALKIYDSMTTNKRSFEPLQAGKIGMYVCGMTVYDYCHIGHARVMVAFDVVSRWLRHLG 81 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRNITDIDDKII RA + + I +T + + +D L C P Sbjct: 82 YE--VNYVRNITDIDDKIIARANEN------GEPIGELTHRFIKAMHEDAAALGCENPDA 133 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI +M+ +I + HAY A+N ++ + + YG S+RK+++ + G+RV Sbjct: 134 EPRATEHIDEMLDMIGTLEQKQHAYAASNGDVYYAVDTFEGYGKLSKRKLEDLQAGSRVD 193 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK + EP W S WG GRPGWHIECSAMS+ LG FDIHGGG DL Sbjct: 194 VDTDKKNPFDFVLWKAAKAGEPQWASSWGGGRPGWHIECSAMSTKCLGNSFDIHGGGHDL 253 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+H GF+N++G KMSKS GNF TI E+++ Sbjct: 254 QFPHHENEIAQSEAATGCTYAHN-WMHVGFINVDGEKMSKSLGNFFTIREVMQ------- 305 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------TSTS------- 343 + IR +L +HYR ++F+ L EA L++ Q TS S Sbjct: 306 KFHPETIRFFILSSHYRSQVNFSDAALKEAHSGLTRIYQALKAADAVLNTSVSAAESIES 365 Query: 344 -----KGIIDPAVLSALYNDLNTVSAIQALHKLARESTK--------------------N 378 G ++A+ +D NT AI L LA+E K Sbjct: 366 INAEHAGTHSADFIAAMNDDFNTPQAISVLFSLAKEVNKLARDADDADTQAQLQLQAVQL 425 Query: 379 HDLLPIFNAS----AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 L I N A L ++ + ++ IE L+QERL K F+ AD IR Sbjct: 426 RALAGILNIGQLNPAEFLQAQIGEVAEDQMSDEQIEALIQERLDSKANKNFARADEIRDL 485 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L++ G LED G+ T W++ Sbjct: 486 LQNSGIELED------GKLGTTWRR 504 >gi|239503714|ref|ZP_04663024.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB900] Length = 473 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 189/475 (39%), Positives = 271/475 (57%), Gaps = 51/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A EK N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEKYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTETLDQSFVER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI------E 395 +A+ +D NT A+ L +L +E + D + ++ +ILG+ + Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRHLTNILGLVQHNVDD 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K + ++ IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQDALALSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTR 464 >gi|269123413|ref|YP_003305990.1| cysteinyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112] gi|268314739|gb|ACZ01113.1| cysteinyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112] Length = 457 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 179/469 (38%), Positives = 273/469 (58%), Gaps = 55/469 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L K+ EF I+ + +YVCGPTVY++ H GN+RP+IVFD L R + Sbjct: 1 MKIYNSLNNKLEEFIPINDKKVGIYVCGPTVYNYIHFGNSRPVIVFDTLAR--HFINQGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V++V+N TDIDDKII ++ +E+ IP + I+ K F++D ++L L +P+ Sbjct: 59 EVSFVQNFTDIDDKIINKSIEEN--IPFEE----ISKKYINAFMEDISKLNILDIVKRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + +IP +I +I+ +I +G+AYE + +++F + YG S +K+ + +G R+ + Sbjct: 113 VSEYIPDIIEMIEVLIYNGYAYERDGDVLFRVNKYLEYGKLSNQKLSDLSVGVRINKDEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK+ EP W +P+ GRPGWHIECSAMS LG FDIH GG+DL+FPH Sbjct: 173 KENPLDFVLWKKKKENEPYWNAPFSEGRPGWHIECSAMSRKLLGDNFDIHAGGIDLLFPH 232 Query: 245 HENEIAQSCC-ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE AQS C + AN W+HNGFL + G KMSKS GNFIT+ E+L + Sbjct: 233 HENERAQSVCFCNEKSSFANYWMHNGFLEVNGEKMSKSLGNFITLREIL-------NDYS 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------KWPQTSTS--------KGII- 347 V+R ML THYR+PI+++++ L ++ L+ ++ Q + K II Sbjct: 286 GDVVRFFMLSTHYRKPINYSIENLEISKKTLNSIIDTIDRYKQIDVTNNSNNEIKKDIIE 345 Query: 348 -DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH---ILGIEVCKEHLNK 403 + A+ SAL +DLNT AI +H L +++ K N+S L +E+ ++++ Sbjct: 346 FELAINSALNDDLNTPLAISCIHDLIKKTNK------YLNSSIFREITLVVEILEKYIIN 399 Query: 404 NISIAIEK----LVQERLILL--------KM-KKFSSADYIRKQLESKG 439 + I +EK ++ E LI L +M K ++ +D IR +L G Sbjct: 400 VLGIKMEKNKNDMLSESLIELLNKIREDARMNKNYALSDMIRDELLKLG 448 >gi|156934911|ref|YP_001438827.1| hypothetical protein ESA_02760 [Cronobacter sakazakii ATCC BAA-894] gi|156533165|gb|ABU77991.1| hypothetical protein ESA_02760 [Cronobacter sakazakii ATCC BAA-894] Length = 479 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 192/482 (39%), Positives = 269/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R I FDV+ R LR+ G K Sbjct: 20 LKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFL-GYK 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + D ++++ T+ KD L L P +PR Sbjct: 79 -LKYVRNITDIDDKIIKRANENG-----EDFVALVDRMVTEMH-KDFDALNILRPDSEPR 131 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A N +++F S +YG SR+ +++ + G RV Sbjct: 132 ATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVAD 191 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 192 SKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 251 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 252 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ-------HYD 303 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGI-----IDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + + A Sbjct: 304 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATVAGGEAFEARFVEA 363 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILG-IEVCKEHL---- 401 + +D NT A L +ARE S+ + L A +LG +E E Sbjct: 364 MNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSG 423 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ +RL K K +++AD R +L G ILED G + T W+ Sbjct: 424 AQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILED------GPQGTTWR 477 Query: 459 QK 460 +K Sbjct: 478 RK 479 >gi|117921105|ref|YP_870297.1| cysteinyl-tRNA synthetase [Shewanella sp. ANA-3] gi|166225306|sp|A0KYM2|SYC_SHESA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|117613437|gb|ABK48891.1| cysteinyl-tRNA synthetase [Shewanella sp. ANA-3] Length = 461 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 261/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P + MYVCG TVYD HIG+ R + FD++ R LRY E Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITDIDDKII+RA + + + +T + + KD L + P +PR Sbjct: 63 -VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMIRPDFEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A+ +++F +S P YG S + +++ + G RV Sbjct: 116 ATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDD 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 176 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 236 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR I+++ + L +A L + T+ +D V Sbjct: 288 AETVRYFLLSGHYRSQINYSEENLKQARAALER---LYTAIKDVDLTVTAAPAEEFVAKF 344 Query: 353 -SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNAS------AHILGI------EVC 397 +A+ +D NT A L + RE K D+ + A +LG+ Sbjct: 345 KAAMDDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAVAMKQLADVLGLLHQAPDAFF 404 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 K + + IE L+ ER K + +AD R +L G +LED G T W Sbjct: 405 KGEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLED------GPSGTTW 458 Query: 458 KQK 460 ++K Sbjct: 459 RKK 461 >gi|210632458|ref|ZP_03297386.1| hypothetical protein COLSTE_01283 [Collinsella stercoris DSM 13279] gi|210159553|gb|EEA90524.1| hypothetical protein COLSTE_01283 [Collinsella stercoris DSM 13279] Length = 493 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 191/508 (37%), Positives = 258/508 (50%), Gaps = 75/508 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+ + +F I+ +RMYVCGPTVYD HIGNAR I FDV+ R L E Sbjct: 1 MKIYNSATHQKEDFHPIEEGRVRMYVCGPTVYDNIHIGNARTFISFDVIRRWLIASGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ +N+TD+DDKII RA ++ + + ++ + +F+ L P +PR Sbjct: 60 -VTFAQNLTDVDDKIINRANEQGRTA------EEVATEFSNKFIGVMRAANVLDPDARPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I+ +I HAY A+N ++ F S P+YG S R ID+ +G R+ E Sbjct: 113 ATKEIGAMIGMIKTLIEGDHAYAADNGDVYFSVRSDPSYGEVSGRNIDDLMVGARIEENE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWH EC+AM YLG DIHGGG DL FP Sbjct: 173 DKRDPLDFALWKAAKPGEPSWKSPWGEGRPGWHTECAAMVHRYLGTPIDIHGGGSDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ CA E AN W+H G L ++G KMSKS GNF T+ E+LE Sbjct: 233 HHENECAQATCAWH-EGFANTWMHTGMLLVDGEKMSKSLGNFFTLAEVLEKHS------- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQ-----------TSTS 343 A +RL ML THYR P+DF+ +RL AE L+ KW Sbjct: 285 AAALRLLMLQTHYRSPLDFSWERLEGAENSLARIAGTCRNLKWAADHVEGEPNAELAEAL 344 Query: 344 KGIIDPAVL---SALYNDLNTVSAIQALHKLARESTK-------------NHDLLPIFNA 387 ++ A + + +D NT AI A +L E+ K + Sbjct: 345 TAAMEKAAADYEACMDDDFNTAGAIAAYFQLVTEANKYLEQAAGAVDEVTARACAAVIAG 404 Query: 388 SAHILGIE--VCKEHL---------------NKNISIAIEKLVQERLILLKMKKFSSADY 430 + LG+E V +E L ++ A EK+++ R K +++AD Sbjct: 405 ALAQLGVELPVIEEPLPVGLLGVAAGLTGYTGDSVDEAAEKILEARAAARAAKDWTTADA 464 Query: 431 IRKQLESKGFILEDYK-----NPDNGQR 453 IR QL G +ED P NG R Sbjct: 465 IRDQLRDMGLAIEDTAAGSRITPQNGDR 492 >gi|284053526|ref|ZP_06383736.1| cysteinyl-tRNA synthetase [Arthrospira platensis str. Paraca] Length = 486 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 188/490 (38%), Positives = 261/490 (53%), Gaps = 66/490 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F ++P ++MY CG TVYD+ H+G+AR +DV+ R L + E Sbjct: 3 LKIYNTQTRQKETFTTLEPGKVKMYCCGVTVYDYCHLGHARSYTTWDVVRRYLEWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA+ EH S + ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRAK-EHDST-----MEEVSQRFIDAYFEDLRRLNVRDANAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 T+HI ++ LI + GHAY + ++ ++ P+YG SRR++++ +MG RV Sbjct: 115 VTDHIQEIHQLIDTLTATGHAYAVDGDVYYNVGHFPDYGKLSRRQLEDLQMGASGRVAVA 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPETLKKKNPADFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMVRQLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELL+ Sbjct: 235 DLVFPHHENEIAQSEAATG-KTLARYWMHNGMVTVGGEKMSKSLGNFTTIRELLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSK-------WPQTST 342 R V+RL +L HYR+P+DFT + + A +L ++ W S Sbjct: 289 -RPVDPMVVRLFILQGHYRKPLDFTDEAIASANNGWETLKDGLLFAQQYGAPLGWSDDS- 346 Query: 343 SKGIIDPAVLS------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-------- 388 S G D + A+ +D NT + L +LA+E + +LL + Sbjct: 347 SPGKYDTTEDALQRFRVAMDDDFNTPGGLAVLFELAKELRRQGNLLAHEGKTDTQSDRIY 406 Query: 389 ---------AHILGIEVCKE----HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQ 434 A + G+E + + IS A IE LV++R K K ++ D IR Q Sbjct: 407 AIWKTLVELAGVFGLEAVTQAQPPAATQGISDAEIEDLVKQRQSARKAKNYAEGDRIRDQ 466 Query: 435 LESKGFILED 444 L++ G L D Sbjct: 467 LQASGVTLID 476 >gi|187928101|ref|YP_001898588.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12J] gi|229558781|sp|B2U9P8|SYC_RALPJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187724991|gb|ACD26156.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12J] Length = 463 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 188/486 (38%), Positives = 269/486 (55%), Gaps = 54/486 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + +S +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETMSALTGRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGRLQTNGLAYQATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG+ FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS A KT N+W+HNGF+ + KMSKS GNF TI ++L+ Sbjct: 234 DLQFPHHENEIAQSEGA--TGKTFVNMWMHNGFVRVNDEKMSKSLGNFFTIRDVLKV--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTS 343 + A V+R +L +HYR ++++ L +A L++ P S S Sbjct: 289 ----YDAEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSES 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH- 400 G L A+ +D NT A+ L +LA E T++ +L A A ++G+ H Sbjct: 345 HG---KRFLEAMNDDFNTPVAVSVLFELASEVNKTRSPELASQLAALAGVIGLLGRDPHV 401 Query: 401 -LNKNIS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 L +S +E ++ER + F+ AD IR L + G +LED Sbjct: 402 FLQGGVSADGVDAAEVEARIEERRAAKAARDFARADAIRADLLAAGIVLEDKPGG----- 456 Query: 454 MTRWKQ 459 +T W++ Sbjct: 457 LTEWRR 462 >gi|87122362|ref|ZP_01078243.1| cysteinyl-tRNA synthetase [Marinomonas sp. MED121] gi|86162337|gb|EAQ63621.1| cysteinyl-tRNA synthetase [Marinomonas sp. MED121] Length = 460 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 264/467 (56%), Gaps = 41/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P + MYVCG TVYD+ HIG+AR MI FD++ R +R+ + Sbjct: 2 LKVYNTLSGKKEEFVPLVPGKVGMYVCGNTVYDYCHIGHARAMISFDIIARHIRFSGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA E+ P + + +I ++ +D +L P +P+ Sbjct: 61 -LNYVRNITDVDDKIIKRA-AENDETPESLTLRMIEAQ-----TQDELKLGNKLPDREPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I +I ++ G AY+ + ++ F T YG + RK+++ G R+ + Sbjct: 114 ATEFMQEIIDMISVLVDKGFAYQGSTGDVYFRTEKHEAYGKLNNRKLEDMLAGARIDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF+LWK + E W+SPWG GRPGWHIECSAMS++ LG FDIHGGG DL FP Sbjct: 174 AKENPADFVLWKSAKEGEVHWQSPWGIGRPGWHIECSAMSTNCLGPHFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA+ + N W+H G + + KMSKS GNF T+ ++LE + Sbjct: 234 HHENEIAQSECANGTD-YVNYWMHCGAVRVNNEKMSKSLGNFFTVRDVLE-------KYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS--------AL 355 VIR M+ + YR PID++ Q L EA++ L + + + + D + S A+ Sbjct: 286 PEVIRFLMVSSQYRSPIDYSEQSLLEAKVGLERMYTSLQGQALTDDYIASSYTERYQQAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNH----DLLPI----FNASAHILGIE-------VCKEH 400 +D NT AI L L RE K D PI + A +LG+ + Sbjct: 346 DDDFNTPVAISVLFDLVRELNKAKASAADNAPILAKELSVLAELLGLLGQDPEYFLKNSV 405 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 LN IS A IE L+ ER+ K K F+ +D IR +L +G L D + Sbjct: 406 LNNGISEAEIETLIAERIQARKDKNFARSDEIRDELSEQGITLLDSR 452 >gi|260557959|ref|ZP_05830171.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606] gi|260408469|gb|EEX01775.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606] Length = 473 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 192/477 (40%), Positives = 269/477 (56%), Gaps = 55/477 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVTKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTETLDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----------------STKNHDLLPIFNASAH--- 390 +A+ +D NT A+ L +L +E ST H L I H Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATMLYSTLRH-LTNILGLVQHNVD 408 Query: 391 -ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L ++ +E L + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 409 DFLKSDIGQEALALS-DAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTR 464 >gi|225568316|ref|ZP_03777341.1| hypothetical protein CLOHYLEM_04391 [Clostridium hylemonae DSM 15053] gi|225162845|gb|EEG75464.1| hypothetical protein CLOHYLEM_04391 [Clostridium hylemonae DSM 15053] Length = 468 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 186/491 (37%), Positives = 257/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLFNTLTRKKEEFVPVEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+ + ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGVSA------DEISKRYIKECKKDMEGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I ++I G+AYE N + F T S +YG S + +D+ + G R V Sbjct: 113 ATEEICGMVEMIGSLIEKGYAYEKNGTVYFRTRSFKDYGKLSHKNLDDLRTGERSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWDSPWSDGRPGWHIECSVMSRKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNHKMSKSLGNFRTVREISE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFT----------VQRLTEA-------------EILLSKWP 338 + V+R ML HYR P++F+ ++R+ A E + ++ Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSADLMEASRNGLERIVNAAGNLKFLMGSAKSEEMTAQER 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 + +A+ +D NT A+ A+ +L + D LL Sbjct: 345 EAFAGSEEFVKGFEAAMDDDFNTADAVAAVFELVKYINTTADAHSSRAYLQALLSRLVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG+ V K+ + IEKL+ ER K K F+ AD IR L KG ILED + Sbjct: 405 TDVLGLIVDKKE--DMLEEEIEKLIAERQAARKEKNFARADEIRGTLLEKGIILEDTREG 462 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 463 ------VKWKK 467 >gi|229815837|ref|ZP_04446161.1| hypothetical protein COLINT_02890 [Collinsella intestinalis DSM 13280] gi|229808532|gb|EEP44310.1| hypothetical protein COLINT_02890 [Collinsella intestinalis DSM 13280] Length = 532 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 185/494 (37%), Positives = 257/494 (52%), Gaps = 70/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+ + +F+ I+ +RMYVCGPTVYD HIGNAR I FDV+ R L E Sbjct: 45 MKIYNSATHQKEDFRPIEEGKVRMYVCGPTVYDNIHIGNARTFISFDVIRRWLIASGYE- 103 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ +N+TD+DDKII RA ++ + + ++ + +F+ L P +PR Sbjct: 104 -VTFAQNLTDVDDKIINRANEQGRTA------EEVATEFSDKFIGVMRAANVLDPDVRPR 156 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I+ +I GHAY A+N ++ F S P+YG S R ID+ +G R+ E Sbjct: 157 ATKEIGAMIGMIKTLIEGGHAYAADNGDVYFSVRSDPSYGEVSGRNIDDLMVGARIEENE 216 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWH EC+AM YLG DIHGGG DL FP Sbjct: 217 DKRDPLDFALWKAAKPGEPSWKSPWGEGRPGWHTECAAMVHRYLGTPIDIHGGGSDLAFP 276 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ CA E AN W+H G L ++G KMSKS GNF T+ E+LE Sbjct: 277 HHENECAQATCAWH-EGFANTWMHTGMLLVDGEKMSKSLGNFFTLAEVLEKHS------- 328 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KW--------PQTSTSKGI 346 A +RL ML THYR P+DF+ +RL AE L+ KW P + + Sbjct: 329 AAALRLLMLQTHYRSPLDFSWERLEGAENSLARIAGTCRNLKWAADHAEGEPNAELADAL 388 Query: 347 IDPAVLSA------LYNDLNTVSAIQALHKLARESTKNHD-------------LLPIFNA 387 +A + +D NT A+ A +L E+ K + + + Sbjct: 389 TAAMEKAAADYEACMDDDFNTAGAVAAYFQLVTEANKYLEQAAGAVDEGAARVCAAVISG 448 Query: 388 SAHILGIE--VCKEHL---------------NKNISIAIEKLVQERLILLKMKKFSSADY 430 + LG++ V +E L ++ A E ++ R K + +AD Sbjct: 449 ALAQLGVKLPVIEEPLPAELAGVAAELVGFEGDDVDAAAEAILSARAEARAAKDWGTADA 508 Query: 431 IRKQLESKGFILED 444 IR +L+ G +ED Sbjct: 509 IRDRLKELGLAIED 522 >gi|187608842|sp|A7MK00|SYC_ENTS8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 192/482 (39%), Positives = 269/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R I FDV+ R LR+ G K Sbjct: 2 LKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + D ++++ T+ KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANENG-----EDFVALVDRMVTEMH-KDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A N +++F S +YG SR+ +++ + G RV Sbjct: 114 ATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 SKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGI-----IDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATVAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILG-IEVCKEHL---- 401 + +D NT A L +ARE S+ + L A +LG +E E Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ +RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|293367905|ref|ZP_06614543.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291317934|gb|EFE58342.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329738050|gb|EGG74271.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU045] Length = 466 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 263/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYDDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + S + S I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQQI 345 Query: 348 DPAV---LSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+T + +L +++ + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IE+L++ER K K F+ AD IR L+++ ILED Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILED 456 >gi|52078589|ref|YP_077380.1| cysteinyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52783950|ref|YP_089779.1| cysteinyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|61216165|sp|Q65PC8|SYC_BACLD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52001800|gb|AAU21742.1| cysteinyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52346452|gb|AAU39086.1| CysS [Bacillus licheniformis ATCC 14580] Length = 467 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 268/487 (55%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IVFD + + L Y E Sbjct: 3 LTLYNTLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRKYLEYKGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P+ I + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEEVPV------IAERFIKAYFEDVGSLGCTKADCHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I IQ +I G+AYEA+ ++ + T S YG S + +DE + G R+ Sbjct: 115 VTENMDEIIDFIQTLIDKGYAYEADGDVYYKTRSFEGYGKLSHQSVDELRSGARIQVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDALDFTLWKAAKDNEISWDSPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQS-EALTGKPFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KEHDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDP----- 349 V+R ML HYR PI+++V+ RL A L ++ST+ D Sbjct: 287 QVLRFFMLSVHYRHPINYSVELLENTKNAFGRLKTAYSNLQHRLKSSTNLTEGDSEWLEK 346 Query: 350 ------AVLSALYNDLNTVSAIQALHKLAR--------ESTKNH---DLLPIFNASAHIL 392 A +A+ +D NT +AI L LA+ ++T H + +F+ +L Sbjct: 347 IEEQRKAFQTAMDDDFNTANAISVLFDLAKHANYYLQEKNTAEHVIQAFIQLFDEICSVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G + ++ L + IE+L+++R + + F+++D IR QL+S ILED P Sbjct: 407 GFSLKEQEL---LDKDIEELIEKRNEARRNRDFATSDQIRDQLKSMNIILED--TP---- 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|148909295|gb|ABR17747.1| unknown [Picea sitchensis] Length = 602 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 169/389 (43%), Positives = 229/389 (58%), Gaps = 41/389 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NT+ +K F+A +P + MYVCG T YD++HIG+AR + FD+LYR L+ E Sbjct: 105 LYIFNTMSKKKELFKAREPGKVGMYVCGVTAYDYSHIGHARVYVTFDILYRYLQRLGYE- 163 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TDIDDKII RA + + ++++ ++F D L CL P+ +PR Sbjct: 164 -VKYVRNFTDIDDKIISRAND------LGENPLSLSNRFCKEFQVDMAELNCLPPSVEPR 216 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+HI Q+I +IQ I+ +G+AY N ++ F P YG S RK+D+ + G R+ Sbjct: 217 VTDHINQIIEMIQQILRNGYAYVVENGDVYFSVDKYPKYGCLSGRKLDDNRAGERIAVDS 276 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAMS+ +LG FDIHGGG+DLIFP Sbjct: 277 RKQNPADFALWKSAKPSEPFWDSPWGPGRPGWHIECSAMSAAHLGYCFDIHGGGVDLIFP 336 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + WIHNGF+ ++ KMSKS GNF TI E+LE S+ Sbjct: 337 HHENEIAQS-CASCNDSNVPYWIHNGFVTVDAEKMSKSLGNFFTIREVLE-------SYH 388 Query: 304 APVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKWPQTSTSKGI--- 346 +RL + THYR ++++ Q L + E LS + S + I Sbjct: 389 PLALRLFLSGTHYRSQLNYSKSQLENASERLFYIYQTLKDCEECLSGHVRQSIGQPIPED 448 Query: 347 -------IDPAVLSALYNDLNTVSAIQAL 368 I A S++ NDL+ A+ AL Sbjct: 449 IQKRINNIHNAFSSSMSNDLHIAMALDAL 477 >gi|207722904|ref|YP_002253338.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum MolK2] gi|206588088|emb|CAQ18668.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum MolK2] Length = 465 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 180/472 (38%), Positives = 257/472 (54%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASAY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGALTDRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQANGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L+ Sbjct: 234 DLQFPHHENEIAQAEGANG-STFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVLKV---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTSK 344 + V+R +L +HYR ++++ L +A L++ P S S Sbjct: 289 ---YDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESH 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH-- 400 G A+ +D NT A+ L +LA E T++ L+ A ++G+ H Sbjct: 346 G---QRFREAMNDDFNTPVAMAVLFELASEVNKTRSPALVNQLAALGGVMGLLGRDPHAF 402 Query: 401 LNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + A +E ++ R + + F+ AD IR L + G +LED Sbjct: 403 LQGGVGAAADGLDTVEVEARIEARRVAKAARDFARADGIRADLLAAGIVLED 454 >gi|160874741|ref|YP_001554057.1| cysteinyl-tRNA synthetase [Shewanella baltica OS195] gi|187631635|sp|A9KWH4|SYC_SHEB9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160860263|gb|ABX48797.1| cysteinyl-tRNA synthetase [Shewanella baltica OS195] gi|315266983|gb|ADT93836.1| cysteinyl-tRNA synthetase [Shewanella baltica OS678] Length = 459 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 262/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ L +A L + T+ +D V Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFIAKF 342 Query: 353 -SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCK 398 +A+ +D NT A L + RE + L A +LG+ E Sbjct: 343 KAAMDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFF 402 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L+ ER K +++AD R +L G LED G T W Sbjct: 403 QGGGSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED------GPSGTTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|288554704|ref|YP_003426639.1| cysteinyl-tRNA synthetase [Bacillus pseudofirmus OF4] gi|288545864|gb|ADC49747.1| cysteinyl-tRNA synthetase [Bacillus pseudofirmus OF4] Length = 465 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 175/486 (36%), Positives = 256/486 (52%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN+L +K F ++ ++MYVCGPTVY++ HIGNARP IV+D++ R L Y E Sbjct: 3 IQLYNSLTKKKETFVPMEEGKVKMYVCGPTVYNYIHIGNARPPIVYDMVRRYLEYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII A + + + + + ++ +++ DT L PR Sbjct: 62 -VEFISNFTDVDDKIIRAAHE------LGEDVFAVANRFIEEYHNDTCALGVKKANKHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T IP++I + +I +AYE+ ++ F T YG S + ID+ + G R+ Sbjct: 115 VTETIPEIIEFVAKLIEKEYAYESGGDVYFRTKKFEGYGKLSSQSIDDLRSGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E WESPWG GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKAAKEGEVSWESPWGDGRPGWHIECSAMVKKYLGDTIDIHAGGKDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N+ KMSKS GNF+ ++++ R A Sbjct: 235 HENEIAQSEALTG-KTMANYWMHNGFININNEKMSKSLGNFVLAHDII-------RQHSA 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKG--------- 345 V+R ML HYR PI+F+ ++RL A L S G Sbjct: 287 EVVRFFMLTAHYRSPINFSDELLDGAKNGLERLRTAVSSLEHRLGESADYGEKAEWLTKI 346 Query: 346 -IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + A + + +D N+ + I + LA+E+ + H + +F+ A +LG Sbjct: 347 SQLKEAFIKEMDDDFNSANGIAVMFDLAKEANRYLREEQTSKEVLHAFIDLFDELADVLG 406 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I V + + + IE L++ER + + F AD IR QL+ +G +LED Sbjct: 407 IVVRTQ--AELLDTEIEALIEERNETRRSRNFKRADEIRDQLKDQGILLEDTAQG----- 459 Query: 454 MTRWKQ 459 RWK+ Sbjct: 460 -VRWKR 464 >gi|119485660|ref|ZP_01619935.1| Cysteinyl-tRNA synthetase, class Ia [Lyngbya sp. PCC 8106] gi|119456985|gb|EAW38112.1| Cysteinyl-tRNA synthetase, class Ia [Lyngbya sp. PCC 8106] Length = 481 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 194/488 (39%), Positives = 261/488 (53%), Gaps = 67/488 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R F ++P +++MY CG TVYD+ H+G+AR I +DV+ R L + Sbjct: 3 LKIYNTQTRTKETFIPLEPQHVKMYCCGVTVYDYCHLGHARSYIFWDVVRRYLEWL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA++E N ++ ++ + + + +D RL PR Sbjct: 61 TVQYVQNFTDIDDKILNRAKKE------NSSMEAVSERFIEAYYEDLRRLNIRDADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 AT++I ++ LIQ + G+AY + ++ + P YG S RK D+ + G RV Sbjct: 115 ATDNISEIYQLIQQLEKKGYAYASKGDVFYSVEKFPEYGKLSGRKQDQLQAGASGRVSGA 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + KK+ +DF LWK S P EP W+SPWG GRPGWHIECSAM LG DIHGGG DLI Sbjct: 175 EGEKKHSSDFALWKASKPGEPAWKSPWGEGRPGWHIECSAMVRQLLGATIDIHGGGGDLI 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGF+ + G KMSKS GNF TI +LLET Sbjct: 235 FPHHENEIAQSEAAN-CEPLARFWMHNGFVTVGGEKMSKSLGNFTTIRQLLETVD----- 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSKGIID----- 348 VIRL + HYR+P+DFT +T A E LL K Q G +D Sbjct: 289 --PMVIRLFVFQAHYRKPLDFTPDAITSAENGWNTLCEGLLFK-SQHGEKLGWLDKNDLP 345 Query: 349 PAVLS--------ALYNDLNTVSAIQALHKLARE----------STKNHDLLPIFNAS-- 388 PA+ S A+ +D NT + L +LA+E K LP + Sbjct: 346 PALHSEAVERFQIAMDDDFNTPGGLAVLFELAKELRTEGNILTHEGKTETPLPQIQQTWW 405 Query: 389 -----AHILGIEVCKEHLNKNISIA-------IEKLVQERLILLKMKKFSSADYIRKQLE 436 A +LG+EV E + +I A IE L+Q+RL K K ++ D IR +L+ Sbjct: 406 TLVQLAEVLGLEVKPE--DTSIPTASGLSDQEIEDLIQQRLAARKAKNYAEGDQIRDRLK 463 Query: 437 SKGFILED 444 G L D Sbjct: 464 EAGITLID 471 >gi|145635477|ref|ZP_01791177.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittAA] gi|145267242|gb|EDK07246.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittAA] Length = 459 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 268/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVAFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE + K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDTEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|329729466|gb|EGG65869.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU144] Length = 466 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 269/471 (57%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTST-----SKGI--I 347 V+R M+ HYR PI++ ++R+ + L+ + Q +T S+ I I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIATDLEEQSEYIQQI 345 Query: 348 DPAV---LSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+T + +L +++ + +LG Sbjct: 346 DKILNQFEAVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IE+L++ER K K F+ AD IR L+++ ILED Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILED 456 >gi|14521604|ref|NP_127080.1| cysteinyl-tRNA synthetase [Pyrococcus abyssi GE5] gi|13878786|sp|Q9UYV2|SYC_PYRAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|5458823|emb|CAB50310.1| cysS cysteinyl-tRNA synthetase [Pyrococcus abyssi GE5] Length = 477 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 197/494 (39%), Positives = 260/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL RK E + + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 IKVYNTLTRKKEELKPLRDGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHR--GF 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA QE P + + + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIKRA-QETGEDP-----GKLAERFIKVFLEDMNALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I I+ + G+AYE ++ + F+ +YG S KI+E + G RV Sbjct: 115 VTEHIDDIIEFIKKLKEKGYAYEGSDGVYFEVQKFKDYGKLSGVKIEELRKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C + W+H GF+ ++G KMSKS GNF+T+ ELL+ + Sbjct: 235 HENEIAQSEACFGH--EWVRYWLHTGFVMVKGEKMSKSLGNFVTVRELLQ-------RYS 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-IDPAVLS--------- 353 VIRL +L HYR P+D+T + L A+ L + T + I + A LS Sbjct: 286 PEVIRLFVLQKHYRSPLDYTEEGLQHAKNNLERLYNTLENIRIAMRNAELSYKWSEKDFE 345 Query: 354 --------------ALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNA 387 A+ +D NT A++A+ +++ K L F Sbjct: 346 AYEAIREARKKFYDAMDDDFNTAEALKAVFEVSNAINKYILEVDKPKESILRKALEFFKV 405 Query: 388 SAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + + GI + KE IE LV+ R L K K+F AD IR++L G LE Sbjct: 406 VSEVFGIFEDYFKEEKKGEEEKLIELLVEVRKQLRKEKRFDLADKIREELRKLGIQLE-- 463 Query: 446 KNPDNGQRMTRWKQ 459 D GQ T WK+ Sbjct: 464 ---DKGQE-TVWKR 473 >gi|319649137|ref|ZP_08003345.1| cysteinyl-tRNA synthetase [Bacillus sp. BT1B_CT2] gi|317388837|gb|EFV69656.1| cysteinyl-tRNA synthetase [Bacillus sp. BT1B_CT2] Length = 463 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 180/485 (37%), Positives = 267/485 (55%), Gaps = 57/485 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IVFD + + L Y E V Sbjct: 1 MYNTLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRKYLEYKGYE--V 58 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV N TD+DDK+I+ A + +P+ I + + + +D L C PR T Sbjct: 59 QYVSNFTDVDDKLIKAANELGEEVPV------IAERFIKAYFEDVGSLGCTKADCHPRVT 112 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++ ++I IQ +I G+AYEA+ ++ + T S YG S + +DE + G R+ K+ Sbjct: 113 ENMDEIIDFIQTLIDKGYAYEADGDVYYKTRSFEGYGKLSHQSVDELRSGARIQVGEKKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 + DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHE Sbjct: 173 DALDFTLWKAAKDNEISWDSPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLAFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS A + A W+HNG++N++ KMSKS GNF+ +++++ + V Sbjct: 233 NEIAQS-EALTGKPFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KEHDPQV 284 Query: 307 IRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDP------- 349 +R ML HYR PI+++V+ RL A L ++ST+ D Sbjct: 285 LRFFMLSVHYRHPINYSVELLENTKNAFGRLKTAYSNLQHRLKSSTNLTEGDSEWLEKIE 344 Query: 350 ----AVLSALYNDLNTVSAIQALHKLAR--------ESTKNH---DLLPIFNASAHILGI 394 A +A+ +D NT +AI L LA+ ++T H + +F+ +LG Sbjct: 345 EQRKAFQTAMDDDFNTANAISVLFDLAKHANYYLQEKNTAEHVIQAFIQLFDEICSVLGF 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + ++ L + IE+L+++R + + F+++D IR QL+S ILED P + Sbjct: 405 SLKEQEL---LDKDIEELIEKRNEARRNRDFATSDQIRDQLKSMNIILED--TP----QG 455 Query: 455 TRWKQ 459 TRWK+ Sbjct: 456 TRWKR 460 >gi|229845478|ref|ZP_04465607.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 6P18H1] gi|229811581|gb|EEP47281.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 6P18H1] Length = 459 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 184/482 (38%), Positives = 268/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVERMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVAFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE + K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDTEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|153000119|ref|YP_001365800.1| cysteinyl-tRNA synthetase [Shewanella baltica OS185] gi|304409708|ref|ZP_07391328.1| cysteinyl-tRNA synthetase [Shewanella baltica OS183] gi|307304064|ref|ZP_07583817.1| cysteinyl-tRNA synthetase [Shewanella baltica BA175] gi|187631634|sp|A6WLP8|SYC_SHEB8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151364737|gb|ABS07737.1| cysteinyl-tRNA synthetase [Shewanella baltica OS185] gi|304352226|gb|EFM16624.1| cysteinyl-tRNA synthetase [Shewanella baltica OS183] gi|306912962|gb|EFN43385.1| cysteinyl-tRNA synthetase [Shewanella baltica BA175] Length = 459 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 262/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ L +A L + T+ +D V Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFVAKF 342 Query: 353 -SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCK 398 +A+ +D NT A L + RE + L A +LG+ E Sbjct: 343 KAAMDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFF 402 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L+ ER K +++AD R +L G LED G T W Sbjct: 403 QGGGSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED------GPSGTTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|323963293|gb|EGB58857.1| cysteinyl-tRNA synthetase [Escherichia coli H489] Length = 461 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 272/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + +++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------SESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|253579512|ref|ZP_04856781.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849013|gb|EES76974.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 469 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 256/482 (53%), Gaps = 61/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF ++ +RMYVCGPTVY+ HIGNARPMI+FD + R + Y E Sbjct: 1 MKLFNTLTRRKEEFVPLEEGKVRMYVCGPTVYNLIHIGNARPMIIFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+ + + KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGVSA------QEISERYIAECKKDMDGMNVKPATTNPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ ++ G+AY A+ + F YG S + +D+ + G R V Sbjct: 113 ATQEINGMISMIQTLVDKGYAYPAADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLQVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W SPW GRPGWHIECS M+ YLG DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPSWPSPWCDGRPGWHIECSVMAKKYLGDEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS CC D+I A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECCNDKI--FAKYWMHNAFLNIDNRKMSKSLGNFRTVREISE------ 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDP 349 + V+R ML HYR P++F+ ++R+T+A L + ++ D Sbjct: 285 -QYDLQVLRFFMLNAHYRSPLNFSADLMEAAKNALERITDAAANLKDRKAAAQTETATDA 343 Query: 350 A-------------VLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFN 386 A+ +D NT A+ A+ +L + + N LL Sbjct: 344 EKELLAQAQEFVKKFEEAMDDDFNTADALAAIFELVKFANTNVSEASSAEFAGTLLDTMV 403 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG++ K E L+K IE L+ ER K K F+ AD IR +L +KG IL+D Sbjct: 404 KLCDVLGLKAVKTEEILDKE----IEDLIAERQEARKAKNFARADEIRDELLAKGIILKD 459 Query: 445 YK 446 + Sbjct: 460 TR 461 >gi|289551670|ref|YP_003472574.1| Cysteinyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] gi|289181201|gb|ADC88446.1| Cysteinyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] Length = 466 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 263/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y + Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I + Q F +D L T PR Sbjct: 61 -VDYVSNFTDVDDKLIKRSQE------LNESVPEIADRYIQAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+N++ G+AYE++ ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMDHMEDIIEFIKNLVDEGYAYESHGDVYFRTRKFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWSSPFGEGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIID-------- 348 V+R M+ HYR PI++ ++ ++ A+ L + + + + I++ Sbjct: 286 DVLRFFMISVHYRSPINYNMELVSAAKSGLERIRNSYQLIEERETIATNIVEQTDYIEQI 345 Query: 349 PAVL----SALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 A+L + +D NT +A+ A + LA+ + K ++ + +LG Sbjct: 346 DAILKQFEQVMNDDFNTANAVTAWYDLAKLANKYVLEKSTSTAVIERFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IE+++ ER K K F+ AD IR L+++ ILED Sbjct: 406 VPLKGQEADVLLDEEIEQMIAERDEARKNKDFARADEIRDTLKAQHIILED 456 >gi|237730496|ref|ZP_04560977.1| cysteinyl-tRNA synthetase [Citrobacter sp. 30_2] gi|226906035|gb|EEH91953.1| cysteinyl-tRNA synthetase [Citrobacter sp. 30_2] Length = 461 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 191/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHSDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A IR ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ +AH +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMAAANGMAAHLRKLSSVLGLLEQDPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|323499496|ref|ZP_08104466.1| cysteinyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] gi|323315369|gb|EGA68410.1| cysteinyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] Length = 460 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 184/481 (38%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + S +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANENGESC------DSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ + +YG SR+ +D+ + G RV + Sbjct: 114 ATEYIKEIIELVETLIERGFAYVADNGDVMFEIAKYDDYGKLSRQDLDQLQAGARVEIES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSSLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGTDYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ L +A L + + I PA A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDISVPAAGGEDYVKRFTDA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE K D++ + A ++GI K Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKTEDVMAASALGALMRELADVIGILHQDPEAFLKGD 405 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +A IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GSEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|215485603|ref|YP_002328034.1| cysteinyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] gi|254781678|sp|B7UKK3|SYC_ECO27 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|215263675|emb|CAS08007.1| cysteinyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] Length = 461 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGRYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|237743811|ref|ZP_04574292.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 7_1] gi|229432842|gb|EEO43054.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 7_1] Length = 472 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 278/482 (57%), Gaps = 56/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIENVSI------KEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RAT++I +MI +IQ +I G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 RATDNIDEMIKIIQALIDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKRDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGNSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++ + G KMSKS G+F+ + ++L K F GR Sbjct: 234 PHHENEMAQSKCACG-GTFARYWMHNGYIKINGEKMSKS-GSFVLLRDIL--KHFEGR-- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P+DF+ + L + + L + T Sbjct: 288 ---VIRLFVLGSHYRKPMDFSDEELNQTKSSLERIENTLKRIKELDRENIKGTDDCQELL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSA-------IQALHKLARESTKNHDLLPIFNAS------ 388 +K ++ + A+ D NT A ++A++K E+ + + L + + Sbjct: 345 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEANISKEGLEVIDEVYSYLVM 404 Query: 389 --AHILGIEV-CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ K +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 405 IIQDVLGVKLKLKVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 464 Query: 446 KN 447 K+ Sbjct: 465 KD 466 >gi|145629045|ref|ZP_01784844.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 22.1-21] gi|144978548|gb|EDJ88271.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 22.1-21] Length = 414 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 164/385 (42%), Positives = 230/385 (59%), Gaps = 30/385 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV+ Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVVFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARESTK 377 A+ +D NT +A+ L ++ARE K Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINK 368 >gi|297568576|ref|YP_003689920.1| cysteinyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296924491|gb|ADH85301.1| cysteinyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 494 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 183/507 (36%), Positives = 275/507 (54%), Gaps = 75/507 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I I+NT + + ++ +++MYVCG T YD+ HIG+AR ++VFD++YR L++ G + Sbjct: 3 ILIHNTKTARKEKLAPLEEGHVKMYVCGITAYDYCHIGHARSVLVFDMIYRYLQHR-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TDIDDKII+RA+++ + ++ + +F +D T L L PT +P Sbjct: 62 -VTFVRNFTDIDDKIIKRAQEQ------GTTCTELSQRFIAKFHEDMTALNTLPPTLEPL 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+MI +I+ ++ AYEA ++ + YG S R +++ + G RV + Sbjct: 115 ATEHLPEMIAMIEELVAKDLAYEAQGDVYYRVQRFAGYGVLSGRGLEDMQAGARVAVNDN 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM YLG+ FDIHGGG DL+FPH Sbjct: 175 KEHPMDFVLWKASKPGEPAWDSPWGPGRPGWHIECSAMGKKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + AN+W+H+GF+ ++ KMSKS GNF+TI E+LE PA Sbjct: 235 HENEIAQSEGASG-KSFANLWVHHGFVTIKDEKMSKSLGNFLTIREVLERH-------PA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIIDPAVL----- 352 +RL + THYR P+D++ L +AE L++ Q + G P+ Sbjct: 287 EALRLFVFSTHYRNPLDYSETALQDAEAALTRIYSALAATAQLPGAAGDPSPSASVVGEK 346 Query: 353 -------------SALYNDLNTVSAI-----------------------QALHKLAREST 376 A+ D N+ A+ Q L L + + Sbjct: 347 DRDKLAKLEQSFHQAMDIDFNSALALGRIFDAIKIINKVRQALPANPAPQDLQLLQQTAA 406 Query: 377 KNHDLLPIFNASAH--ILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYI 431 DL +F + + +E ++ L +SI IE L+++R + K ++ AD I Sbjct: 407 TIRDLTAVFGLAQEEPVSWLEKRQQRLLAQLSIKPAEIEALLEQREQARRDKDWAEADRI 466 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWK 458 R QL + +++D PD T+W+ Sbjct: 467 RDQLLQQRIVIKD--GPDG----TKWE 487 >gi|291567546|dbj|BAI89818.1| cysteinyl-tRNA synthetase [Arthrospira platensis NIES-39] Length = 486 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 188/490 (38%), Positives = 260/490 (53%), Gaps = 66/490 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F ++P ++MY CG TVYD+ H+G+AR +DV+ R L + E Sbjct: 3 LKIYNTQTRQKETFTTLEPGKVKMYCCGVTVYDYCHLGHARSYTTWDVVRRYLEWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA+ EH S + ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRAK-EHDST-----MEEVSQRFIDAYFEDLRRLNVRDANAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 T+HI ++ LI + GHAY + ++ + P+YG SRR++++ +MG RV Sbjct: 115 VTDHIQEIHQLIDTLTATGHAYAVDGDVYYSVGHFPDYGKLSRRQLEDLQMGASGRVAVA 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPETLKKKNPADFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMVRQLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELL+ Sbjct: 235 DLVFPHHENEIAQSEAATG-KTLARYWMHNGMVTVGGEKMSKSLGNFTTIRELLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSK-------WPQTST 342 R V+RL +L HYR+P+DFT + + A +L ++ W S Sbjct: 289 -RPVDPMVVRLFILQGHYRKPLDFTDEAIASANNGWETLKDGLLFAQQYGAPLGWSDDS- 346 Query: 343 SKGIIDPAVLS------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-------- 388 S G D + A+ +D NT + L +LA+E + +LL + Sbjct: 347 SPGKYDTTEDALQRFRVAMDDDFNTPGGLAVLFELAKELRRQGNLLAHEGKTDTQSDRIY 406 Query: 389 ---------AHILGIEVCKE----HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQ 434 A + G+E + + IS A IE LV++R K K ++ D IR Q Sbjct: 407 AIWKTLVELAGVFGLEAVTQAQPPAATQGISDAEIEDLVKQRQSARKAKNYAEGDRIRDQ 466 Query: 435 LESKGFILED 444 L++ G L D Sbjct: 467 LQASGVTLID 476 >gi|297587609|ref|ZP_06946253.1| cysteine--tRNA ligase [Finegoldia magna ATCC 53516] gi|297574298|gb|EFH93018.1| cysteine--tRNA ligase [Finegoldia magna ATCC 53516] Length = 462 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 180/474 (37%), Positives = 255/474 (53%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLYNTLTRKKEEFKPIKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC-LAPTHQP 123 V +V N TDIDDKII +A+ E IT K Q ++ + + L T P Sbjct: 59 NVKFVSNFTDIDDKIINKAKDEDIDF------REITKKYIQAYLDNVSGLNFDEEDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATEYIDEMIKFVKTLEDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNS 172 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK R EP WESPWG GRPGWH+ECS MS LG DIH GG DL F Sbjct: 173 EKKNPMDFALWKKRKEESEPAWESPWGMGRPGWHLECSVMSKSILGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS C AN W+HN + ++ KMSKS NF + ++ + Sbjct: 233 PHHENEIAQSETCTGAHF---ANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EK 282 Query: 301 SWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPA 350 + VIRL +L HYR PIDF +++RL A+ L++ + S+ K D Sbjct: 283 EFDLEVIRLWLLSVHYRNPIDFSHDTLVATKNSLERLYTAKKFLNRILENSSEKEGSDDN 342 Query: 351 VLS-------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHILG 393 + S A+ +D+NT AI L + KN+D + + +++LG Sbjct: 343 IQSFREKFEQAMDDDINTSDAISVLFDFIKYINKNYDENTSKNILTEAKKLMDDISYVLG 402 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I +E + ++ IE L+++R K K F AD IR +L S G +L+D ++ Sbjct: 403 ILFKEE--DDDLDSEIEDLIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRD 454 >gi|224141927|ref|XP_002324312.1| predicted protein [Populus trichocarpa] gi|222865746|gb|EEF02877.1| predicted protein [Populus trichocarpa] Length = 493 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 187/502 (37%), Positives = 269/502 (53%), Gaps = 78/502 (15%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + RK F+ + MYVCG T YD +HIG+AR + FDVL R L++ + V YVR Sbjct: 1 MSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGFD--VHYVR 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII RA + D IS+ + + ++F+ D L CL P+ +PR ++H+P Sbjct: 59 NFTDVDDKIIARANELG-----EDPISL-SKRYCEEFLHDMVYLHCLPPSVEPRVSDHMP 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 Q+I +I+ I+ +G+AY + ++ F +P YG S RK+++ + G RV KKNPAD Sbjct: 113 QIIDMIERILENGYAYRIDGDVYFSVDKLPEYGRLSGRKLEDNRAGERVAVDSRKKNPAD 172 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK + EP W+SPWG GRPGWHIECSAMS+ YLG FDIHGGG+DL+FPHHENEIA Sbjct: 173 FALWKSAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIA 232 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 QSC A R + + W+HNGF+ ++ KMSKS GNF TI +++ + +RL Sbjct: 233 QSCAACR-DSNISYWVHNGFVTIDSEKMSKSLGNFFTIRQVINL-------YHPLALRLF 284 Query: 311 MLMTHYREPIDFT--------------VQRLTEAEILLSKW----------PQ------- 339 +L THYR P++++ Q L + E +LS+ P Sbjct: 285 LLGTHYRSPVNYSDVQLESASERIFYIYQTLHDCENILSQHRVAFEKDAIPPDTINDINK 344 Query: 340 ------TSTSKGIIDPAVLSALYNDLNTVS----------------AIQALHKLARESTK 377 TS S + P +LSAL + L ++ +I AL K+ R + Sbjct: 345 FHDTLVTSMSDDLHTPVLLSALSDPLKIINDMLHTRKGKKQIKRIESIAALEKMVRNALM 404 Query: 378 NHDLL-PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 L+ P +N + L + + K I + ++ER + K K + +D IRK L Sbjct: 405 VLGLMPPTYNEALQQLREKALRR--AKLTEDQILQKIEERTVARKDKDYEKSDAIRKDLA 462 Query: 437 SKGFILEDYKNPDNGQRMTRWK 458 + G L D +PD T W+ Sbjct: 463 ALGIALMD--SPDG----TSWR 478 >gi|301020339|ref|ZP_07184446.1| cysteinyl-tRNA synthetase [Escherichia coli MS 69-1] gi|300398784|gb|EFJ82322.1| cysteinyl-tRNA synthetase [Escherichia coli MS 69-1] Length = 461 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMITEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|170721588|ref|YP_001749276.1| cysteinyl-tRNA synthetase [Pseudomonas putida W619] gi|229558806|sp|B1J805|SYC_PSEPW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169759591|gb|ACA72907.1| cysteinyl-tRNA synthetase [Pseudomonas putida W619] Length = 460 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 255/467 (54%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPYWDSPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLDV-------YH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLS-AL 355 V+R ++ +HYR I+++ L +A+ L ++ P+ + G S A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEEFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------AHILGI------EVCKEHL 401 +D T A L L RE + D P A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDPDAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + A +E L+Q RL K ++ +D IR QL + G +LED K Sbjct: 406 EGKVDAAEVEALIQARLQARADKNWAESDRIRDQLTAMGVVLEDSKG 452 >gi|26246536|ref|NP_752575.1| cysteinyl-tRNA synthetase [Escherichia coli CFT073] gi|91209601|ref|YP_539587.1| cysteinyl-tRNA synthetase [Escherichia coli UTI89] gi|117622783|ref|YP_851696.1| cysteinyl-tRNA synthetase [Escherichia coli APEC O1] gi|157155754|ref|YP_001461714.1| cysteinyl-tRNA synthetase [Escherichia coli E24377A] gi|157160050|ref|YP_001457368.1| cysteinyl-tRNA synthetase [Escherichia coli HS] gi|162139357|ref|YP_688055.2| cysteinyl-tRNA synthetase [Shigella flexneri 5 str. 8401] gi|170021093|ref|YP_001726047.1| cysteinyl-tRNA synthetase [Escherichia coli ATCC 8739] gi|191172271|ref|ZP_03033813.1| cysteinyl tRNA synthetase [Escherichia coli F11] gi|193064170|ref|ZP_03045254.1| cysteinyl tRNA synthetase [Escherichia coli E22] gi|193067585|ref|ZP_03048552.1| cysteinyl tRNA synthetase [Escherichia coli E110019] gi|194429574|ref|ZP_03062094.1| cysteinyl tRNA synthetase [Escherichia coli B171] gi|194437452|ref|ZP_03069549.1| cysteinyl tRNA synthetase [Escherichia coli 101-1] gi|209917742|ref|YP_002291826.1| cysteinyl-tRNA synthetase [Escherichia coli SE11] gi|218553090|ref|YP_002386003.1| cysteinyl-tRNA synthetase [Escherichia coli IAI1] gi|218557437|ref|YP_002390350.1| cysteinyl-tRNA synthetase [Escherichia coli S88] gi|218688385|ref|YP_002396597.1| cysteinyl-tRNA synthetase [Escherichia coli ED1a] gi|218693989|ref|YP_002401656.1| cysteinyl-tRNA synthetase [Escherichia coli 55989] gi|218698893|ref|YP_002406522.1| cysteinyl-tRNA synthetase [Escherichia coli IAI39] gi|227884465|ref|ZP_04002270.1| cysteinyl-tRNA synthetase [Escherichia coli 83972] gi|237707473|ref|ZP_04537954.1| cysteinyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|253774486|ref|YP_003037317.1| cysteinyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160594|ref|YP_003043702.1| cysteinyl-tRNA synthetase [Escherichia coli B str. REL606] gi|256020497|ref|ZP_05434362.1| cysteinyl-tRNA synthetase [Shigella sp. D9] gi|260842721|ref|YP_003220499.1| cysteinyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|293408676|ref|ZP_06652515.1| cysteinyl-tRNA synthetase [Escherichia coli B354] gi|293413782|ref|ZP_06656431.1| cysteinyl-tRNA synthetase [Escherichia coli B185] gi|293418593|ref|ZP_06661028.1| cysteinyl-tRNA synthetase [Escherichia coli B088] gi|297517317|ref|ZP_06935703.1| cysteinyl-tRNA synthetase [Escherichia coli OP50] gi|300819552|ref|ZP_07099746.1| cysteinyl-tRNA synthetase [Escherichia coli MS 107-1] gi|300820228|ref|ZP_07100380.1| cysteinyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300903202|ref|ZP_07121133.1| cysteinyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300919177|ref|ZP_07135707.1| cysteinyl-tRNA synthetase [Escherichia coli MS 115-1] gi|300925801|ref|ZP_07141656.1| cysteinyl-tRNA synthetase [Escherichia coli MS 182-1] gi|300929112|ref|ZP_07144605.1| cysteinyl-tRNA synthetase [Escherichia coli MS 187-1] gi|300940519|ref|ZP_07155089.1| cysteinyl-tRNA synthetase [Escherichia coli MS 21-1] gi|300987704|ref|ZP_07178317.1| cysteinyl-tRNA synthetase [Escherichia coli MS 45-1] gi|301049738|ref|ZP_07196683.1| cysteinyl-tRNA synthetase [Escherichia coli MS 185-1] gi|301301682|ref|ZP_07207817.1| cysteinyl-tRNA synthetase [Escherichia coli MS 124-1] gi|301327827|ref|ZP_07221017.1| cysteinyl-tRNA synthetase [Escherichia coli MS 78-1] gi|307314558|ref|ZP_07594160.1| cysteinyl-tRNA synthetase [Escherichia coli W] gi|312970621|ref|ZP_07784802.1| cysteinyl-tRNA synthetase [Escherichia coli 1827-70] gi|331651486|ref|ZP_08352506.1| cysteine--tRNA ligase [Escherichia coli M718] gi|331656583|ref|ZP_08357545.1| cysteine--tRNA ligase [Escherichia coli TA206] gi|331661914|ref|ZP_08362837.1| cysteine--tRNA ligase [Escherichia coli TA143] gi|331666881|ref|ZP_08367755.1| cysteine--tRNA ligase [Escherichia coli TA271] gi|331672057|ref|ZP_08372853.1| cysteine--tRNA ligase [Escherichia coli TA280] gi|331676195|ref|ZP_08376907.1| cysteine--tRNA ligase [Escherichia coli H591] gi|331681920|ref|ZP_08382553.1| cysteine--tRNA ligase [Escherichia coli H299] gi|332281678|ref|ZP_08394091.1| cysteinyl-tRNA synthetase [Shigella sp. D9] gi|29336539|sp|Q8FK44|SYC_ECOL6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123266145|sp|Q1RF08|SYC_ECOUT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629813|sp|A7ZIT5|SYC_ECO24 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629814|sp|A7ZXI1|SYC_ECOHS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629815|sp|A1A8J2|SYC_ECOK1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631652|sp|Q0T776|SYC_SHIF8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082063|sp|B1IZ75|SYC_ECOLC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710841|sp|B6I0H1|SYC_ECOSE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735055|sp|B7ME49|SYC_ECO45 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735056|sp|B7NL20|SYC_ECO7I RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735057|sp|B7M4M9|SYC_ECO8A RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781679|sp|B7L7F3|SYC_ECO55 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781680|sp|B7MRI9|SYC_ECO81 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|26106935|gb|AAN79119.1|AE016757_23 Cysteinyl-tRNA synthetase [Escherichia coli CFT073] gi|91071175|gb|ABE06056.1| cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Escherichia coli UTI89] gi|115511907|gb|ABI99981.1| cysteinyl-tRNA synthetase [Escherichia coli APEC O1] gi|157065730|gb|ABV04985.1| cysteinyl tRNA synthetase [Escherichia coli HS] gi|157077784|gb|ABV17492.1| cysteinyl-tRNA synthetase [Escherichia coli E24377A] gi|169756021|gb|ACA78720.1| cysteinyl-tRNA synthetase [Escherichia coli ATCC 8739] gi|190907370|gb|EDV66967.1| cysteinyl tRNA synthetase [Escherichia coli F11] gi|192929199|gb|EDV82809.1| cysteinyl tRNA synthetase [Escherichia coli E22] gi|192958997|gb|EDV89433.1| cysteinyl tRNA synthetase [Escherichia coli E110019] gi|194412371|gb|EDX28673.1| cysteinyl tRNA synthetase [Escherichia coli B171] gi|194423621|gb|EDX39611.1| cysteinyl tRNA synthetase [Escherichia coli 101-1] gi|209911001|dbj|BAG76075.1| cysteinyl-tRNA synthase [Escherichia coli SE11] gi|218350721|emb|CAU96413.1| cysteinyl-tRNA synthetase [Escherichia coli 55989] gi|218359858|emb|CAQ97400.1| cysteinyl-tRNA synthetase [Escherichia coli IAI1] gi|218364206|emb|CAR01871.1| cysteinyl-tRNA synthetase [Escherichia coli S88] gi|218368879|emb|CAR16629.1| cysteinyl-tRNA synthetase [Escherichia coli IAI39] gi|218425949|emb|CAR06755.1| cysteinyl-tRNA synthetase [Escherichia coli ED1a] gi|226898683|gb|EEH84942.1| cysteinyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|227838551|gb|EEJ49017.1| cysteinyl-tRNA synthetase [Escherichia coli 83972] gi|242376305|emb|CAQ30998.1| cysteinyl-tRNA synthetase [Escherichia coli BL21(DE3)] gi|253325530|gb|ACT30132.1| cysteinyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972495|gb|ACT38166.1| cysteinyl-tRNA synthetase [Escherichia coli B str. REL606] gi|253976705|gb|ACT42375.1| cysteinyl-tRNA synthetase [Escherichia coli BL21(DE3)] gi|257757868|dbj|BAI29365.1| cysteinyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|284920336|emb|CBG33396.1| cysteinyl-tRNA synthetase [Escherichia coli 042] gi|291325121|gb|EFE64536.1| cysteinyl-tRNA synthetase [Escherichia coli B088] gi|291433840|gb|EFF06813.1| cysteinyl-tRNA synthetase [Escherichia coli B185] gi|291471854|gb|EFF14337.1| cysteinyl-tRNA synthetase [Escherichia coli B354] gi|294494083|gb|ADE92839.1| cysteinyl-tRNA synthetase [Escherichia coli IHE3034] gi|300298494|gb|EFJ54879.1| cysteinyl-tRNA synthetase [Escherichia coli MS 185-1] gi|300404775|gb|EFJ88313.1| cysteinyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300407683|gb|EFJ91221.1| cysteinyl-tRNA synthetase [Escherichia coli MS 45-1] gi|300413722|gb|EFJ97032.1| cysteinyl-tRNA synthetase [Escherichia coli MS 115-1] gi|300418111|gb|EFK01422.1| cysteinyl-tRNA synthetase [Escherichia coli MS 182-1] gi|300454692|gb|EFK18185.1| cysteinyl-tRNA synthetase [Escherichia coli MS 21-1] gi|300462904|gb|EFK26397.1| cysteinyl-tRNA synthetase [Escherichia coli MS 187-1] gi|300527013|gb|EFK48082.1| cysteinyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300527878|gb|EFK48940.1| cysteinyl-tRNA synthetase [Escherichia coli MS 107-1] gi|300843179|gb|EFK70939.1| cysteinyl-tRNA synthetase [Escherichia coli MS 124-1] gi|300845630|gb|EFK73390.1| cysteinyl-tRNA synthetase [Escherichia coli MS 78-1] gi|306905876|gb|EFN36399.1| cysteinyl-tRNA synthetase [Escherichia coli W] gi|307552429|gb|ADN45204.1| cysteinyl-tRNA synthetase [Escherichia coli ABU 83972] gi|307628004|gb|ADN72308.1| cysteinyl-tRNA synthetase [Escherichia coli UM146] gi|309700788|emb|CBJ00084.1| cysteinyl-tRNA synthetase [Escherichia coli ETEC H10407] gi|310337270|gb|EFQ02408.1| cysteinyl-tRNA synthetase [Escherichia coli 1827-70] gi|315059799|gb|ADT74126.1| cysteinyl-tRNA synthetase [Escherichia coli W] gi|315256355|gb|EFU36323.1| cysteinyl-tRNA synthetase [Escherichia coli MS 85-1] gi|315289989|gb|EFU49378.1| cysteinyl-tRNA synthetase [Escherichia coli MS 110-3] gi|315294314|gb|EFU53665.1| cysteinyl-tRNA synthetase [Escherichia coli MS 153-1] gi|315299089|gb|EFU58343.1| cysteinyl-tRNA synthetase [Escherichia coli MS 16-3] gi|320180178|gb|EFW55115.1| Cysteinyl-tRNA synthetase [Shigella boydii ATCC 9905] gi|320201474|gb|EFW76054.1| Cysteinyl-tRNA synthetase [Escherichia coli EC4100B] gi|323160878|gb|EFZ46803.1| cysteinyl-tRNA synthetase [Escherichia coli E128010] gi|323170660|gb|EFZ56310.1| cysteinyl-tRNA synthetase [Escherichia coli LT-68] gi|323184846|gb|EFZ70216.1| cysteinyl-tRNA synthetase [Escherichia coli 1357] gi|323379632|gb|ADX51900.1| cysteinyl-tRNA synthetase [Escherichia coli KO11] gi|323945190|gb|EGB41250.1| cysteinyl-tRNA synthetase [Escherichia coli H120] gi|323952862|gb|EGB48730.1| cysteinyl-tRNA synthetase [Escherichia coli H252] gi|323958529|gb|EGB54234.1| cysteinyl-tRNA synthetase [Escherichia coli H263] gi|323965083|gb|EGB60543.1| cysteinyl-tRNA synthetase [Escherichia coli M863] gi|323975981|gb|EGB71074.1| cysteinyl-tRNA synthetase [Escherichia coli TW10509] gi|324006401|gb|EGB75620.1| cysteinyl-tRNA synthetase [Escherichia coli MS 57-2] gi|324010562|gb|EGB79781.1| cysteinyl-tRNA synthetase [Escherichia coli MS 60-1] gi|324019545|gb|EGB88764.1| cysteinyl-tRNA synthetase [Escherichia coli MS 117-3] gi|324116764|gb|EGC10678.1| cysteinyl-tRNA synthetase [Escherichia coli E1167] gi|327254874|gb|EGE66490.1| cysteinyl-tRNA synthetase [Escherichia coli STEC_7v] gi|331050759|gb|EGI22816.1| cysteine--tRNA ligase [Escherichia coli M718] gi|331054831|gb|EGI26840.1| cysteine--tRNA ligase [Escherichia coli TA206] gi|331060336|gb|EGI32300.1| cysteine--tRNA ligase [Escherichia coli TA143] gi|331066105|gb|EGI37989.1| cysteine--tRNA ligase [Escherichia coli TA271] gi|331071046|gb|EGI42405.1| cysteine--tRNA ligase [Escherichia coli TA280] gi|331076253|gb|EGI47535.1| cysteine--tRNA ligase [Escherichia coli H591] gi|331081122|gb|EGI52287.1| cysteine--tRNA ligase [Escherichia coli H299] gi|332104030|gb|EGJ07376.1| cysteinyl-tRNA synthetase [Shigella sp. D9] gi|332341889|gb|AEE55223.1| cysteinyl-tRNA synthetase CysS [Escherichia coli UMNK88] gi|332760809|gb|EGJ91097.1| cysteinyl-tRNA synthetase [Shigella flexneri 4343-70] gi|333007742|gb|EGK27218.1| cysteinyl-tRNA synthetase [Shigella flexneri K-218] gi|333008207|gb|EGK27682.1| cysteinyl-tRNA synthetase [Shigella flexneri VA-6] gi|333009963|gb|EGK29398.1| cysteinyl-tRNA synthetase [Shigella flexneri K-272] gi|333020797|gb|EGK40057.1| cysteinyl-tRNA synthetase [Shigella flexneri K-227] Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|256023857|ref|ZP_05437722.1| cysteinyl-tRNA synthetase [Escherichia sp. 4_1_40B] gi|301648555|ref|ZP_07248272.1| cysteinyl-tRNA synthetase [Escherichia coli MS 146-1] gi|307137169|ref|ZP_07496525.1| cysteinyl-tRNA synthetase [Escherichia coli H736] gi|331641048|ref|ZP_08342183.1| cysteine--tRNA ligase [Escherichia coli H736] gi|301073390|gb|EFK88196.1| cysteinyl-tRNA synthetase [Escherichia coli MS 146-1] gi|315616534|gb|EFU97151.1| cysteinyl-tRNA synthetase [Escherichia coli 3431] gi|323972179|gb|EGB67391.1| cysteinyl-tRNA synthetase [Escherichia coli TA007] gi|331037846|gb|EGI10066.1| cysteine--tRNA ligase [Escherichia coli H736] Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADGSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|170683319|ref|YP_001742670.1| cysteinyl-tRNA synthetase [Escherichia coli SMS-3-5] gi|331645713|ref|ZP_08346816.1| cysteine--tRNA ligase [Escherichia coli M605] gi|226735059|sp|B1LKE5|SYC_ECOSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|170521037|gb|ACB19215.1| cysteinyl tRNA synthetase [Escherichia coli SMS-3-5] gi|222032317|emb|CAP75056.1| Cysteinyl-tRNA synthetase [Escherichia coli LF82] gi|281177699|dbj|BAI54029.1| cysteinyl-tRNA synthetase [Escherichia coli SE15] gi|312945102|gb|ADR25929.1| cysteinyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C] gi|330910316|gb|EGH38826.1| cysteinyl-tRNA synthetase [Escherichia coli AA86] gi|331044465|gb|EGI16592.1| cysteine--tRNA ligase [Escherichia coli M605] Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|16128510|ref|NP_415059.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|89107393|ref|AP_001173.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110] gi|170080109|ref|YP_001729429.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238899807|ref|YP_002925603.1| cysteinyl-tRNA synthetase [Escherichia coli BW2952] gi|300949224|ref|ZP_07163257.1| cysteinyl-tRNA synthetase [Escherichia coli MS 116-1] gi|300954345|ref|ZP_07166803.1| cysteinyl-tRNA synthetase [Escherichia coli MS 175-1] gi|301022849|ref|ZP_07186685.1| cysteinyl-tRNA synthetase [Escherichia coli MS 196-1] gi|135097|sp|P21888|SYC_ECOLI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558631|sp|B1XGC4|SYC_ECODH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|259511830|sp|C4ZUX4|SYC_ECOBW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|20664375|pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase gi|20664376|pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase gi|20664379|pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With Cysteine Substrate Bound gi|20664380|pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With Cysteine Substrate Bound gi|56966182|pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary Complex With Trnacys gi|41206|emb|CAA41983.1| cysteinyl-tRNA synthetase [Escherichia coli K-12] gi|145692|gb|AAA23658.1| transfer RNA-Cys synthetase [Escherichia coli] gi|1773207|gb|AAB40279.1| cysteinyl-tRNA synthetase [Escherichia coli] gi|1786737|gb|AAC73628.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|85674663|dbj|BAE76303.1| cysteinyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110] gi|169887944|gb|ACB01651.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238860697|gb|ACR62695.1| cysteinyl-tRNA synthetase [Escherichia coli BW2952] gi|260450291|gb|ACX40713.1| cysteinyl-tRNA synthetase [Escherichia coli DH1] gi|299881060|gb|EFI89271.1| cysteinyl-tRNA synthetase [Escherichia coli MS 196-1] gi|300318682|gb|EFJ68466.1| cysteinyl-tRNA synthetase [Escherichia coli MS 175-1] gi|300451342|gb|EFK14962.1| cysteinyl-tRNA synthetase [Escherichia coli MS 116-1] gi|315135208|dbj|BAJ42367.1| cysteinyl-tRNA synthetase [Escherichia coli DH1] gi|323943145|gb|EGB39302.1| cysteinyl-tRNA synthetase [Escherichia coli E482] gi|227964|prf||1714234A Cys-tRNA synthetase Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|237756267|ref|ZP_04584825.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691568|gb|EEP60618.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 487 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 187/495 (37%), Positives = 262/495 (52%), Gaps = 75/495 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K +F I P +++Y CG TVYD+ H+G+ R +IVFD++ R LRY Sbjct: 3 LKIYNTLTGKKEDFAPIKPGEVKIYTCGVTVYDYNHVGHGRSLIVFDMIRRYLRYL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA+ E +P S+I+ K +++ D + +PR Sbjct: 61 NVIFVRNFTDVDDKIINRAKNE--CLPF----SVISDKFIKEYFDDAEKFRIEPADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP +I IQ ++ G+AYEA+ ++ F YG S+R IDE G R+ Sbjct: 115 VTTHIPDIINFIQKLVDAGYAYEADGDVYFSVRKFKEYGKLSKRSIDELLAGARIEPGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + EP WESPWG+GRPGWH EC AM +LG+ DIHGGGLDL FPH Sbjct: 175 KKDPLDFALWKSAKAGEPYWESPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A WIHNG + + G+KMSKS GN+IT+ E+ + Sbjct: 235 HENEIAQAEALTG-KPFARYWIHNGLVTVNGQKMSKSLGNYITLKEIYS-------KYEP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTE--------------AEILLSKWPQTSTSKGIIDPA 350 ++RL +L HYR P+DF+ ++ E AE+L +K P +G + A Sbjct: 287 DILRLLVLSVHYRSPLDFSWDKMEETKKAYERLKNAIEEAEVL-NKLPIEENFEGDLYNA 345 Query: 351 V-------LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHIL 392 V SA+ +D NT A+ +L L RE D L + +A L Sbjct: 346 VQKAQSGFYSAMSDDFNTPEALASLFGLVREMNILRDKAIKHGGISKKALESYKEAAKTL 405 Query: 393 ------------GIEVC-----------KEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 ++ C +E +N+++ I+ L++ R K K+F+ AD Sbjct: 406 HDIGRDIFGLFDSLQPCVKQEEIKAKEKEESINEDL---IQVLIEAREKARKDKQFAIAD 462 Query: 430 YIRKQLESKGFILED 444 IR +L KG ILED Sbjct: 463 LIRDKLAEKGIILED 477 >gi|91788726|ref|YP_549678.1| cysteinyl-tRNA synthetase [Polaromonas sp. JS666] gi|122967676|sp|Q129L2|SYC_POLSJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91697951|gb|ABE44780.1| cysteinyl-tRNA synthetase [Polaromonas sp. JS666] Length = 462 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 257/468 (54%), Gaps = 47/468 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + F + P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ G K Sbjct: 3 LRIYNTLSRDVEVFSPLLPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVS-GLK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII+RA + + I +T + +D L PTH+PR Sbjct: 62 -VTYVRNVTDIDDKIIKRAVEN------GETIRSLTDRMVVALHQDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-----ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 AT+ +PQM+ LI + G AY+ ++ + YG S + +DE + G RV Sbjct: 115 ATDFVPQMLSLIGTLEKKGLAYQTQSGSGQGDVNYAVRKFDGYGKLSGKSLDELRAGERV 174 Query: 180 PEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K +P DF+LWK + P EP W+SP+G GRPGWHIECSAM+ LG+ FDIHGG Sbjct: 175 EVLDGKDDPLDFVLWKSAKPSEPDDAKWDSPYGPGRPGWHIECSAMACELLGESFDIHGG 234 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENEIAQS A + A W+HNGF+ ++ KMSKS GNF TI E+L Sbjct: 235 GADLQFPHHENEIAQSEGA-FGKPLAGTWMHNGFVRVDNEKMSKSLGNFFTIREILA--- 290 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL---- 352 + A +R ++ HYR P++++ L +A L + T+ ++ PAV+ Sbjct: 291 ----KYDAETVRFFIIRAHYRSPLNYSDAHLDDARNSLKR---LYTALDLVSPAVVAIDW 343 Query: 353 ---------SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI--EVCKE 399 +A+ D T A+ L LA E T++ +L + + LG+ Sbjct: 344 TNPFAARFKAAMDEDFGTPEAVAVLFDLAGEVNKTRSAELAGLLKSLGGCLGLLQSAPGS 403 Query: 400 HLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L + +I++L+ +R K K F+ AD IR L +G +L+D Sbjct: 404 YLQAGAGLDDASIQRLIAQRADAKKTKNFAEADRIRNDLLGQGIVLKD 451 >gi|294141771|ref|YP_003557749.1| cysteinyl-tRNA synthetase [Shewanella violacea DSS12] gi|293328240|dbj|BAJ02971.1| cysteinyl-tRNA synthetase [Shewanella violacea DSS12] Length = 459 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 187/488 (38%), Positives = 262/488 (53%), Gaps = 62/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKIGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + S +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRAAENKESC------ESLTERLIGEMHRDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I HAY N +++F SS P YG S + I++ + G RV + Sbjct: 114 ATLHMPEIIDMVEKLIEKDHAYVSGNGDVLFSVSSFPEYGRLSGQNIEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWDSPWGAGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-SYVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 A IR +L HYR ++++ L +A+ L + TS +D +V S Sbjct: 286 AGTIRYFLLSGHYRSQLNYSEDNLKQAKSALER---LYTSLKGLDLSVESADASEFVAKF 342 Query: 354 --ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEV------------- 396 A+ +D NT A L ++ RE K D+ A+A LG+++ Sbjct: 343 KAAMDDDFNTPEAYSVLFEMVREINRVKGSDI-----AAASALGVKLKELAEVLGLLEQD 397 Query: 397 ----CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 K + + IE L+ ER K + +AD R L + G ILED G Sbjct: 398 VDTFFKGEGSDDEVAQIEALIVERNRARAEKDWPAADIARDGLNALGVILED------GP 451 Query: 453 RMTRWKQK 460 T W++K Sbjct: 452 SGTTWRKK 459 >gi|197286005|ref|YP_002151877.1| cysteinyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227356519|ref|ZP_03840906.1| cysteinyl-tRNA synthetase [Proteus mirabilis ATCC 29906] gi|229470558|sp|B4F1M6|SYC_PROMH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|194683492|emb|CAR44297.1| cysteinyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227163275|gb|EEI48202.1| cysteinyl-tRNA synthetase [Proteus mirabilis ATCC 29906] Length = 463 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 265/482 (54%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LKIFNTLTRQKEEFKPIHKGKIGMYVCGITIYDLCHIGHGRTFVAFDAITRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TD+DDKII+RA I N+ +T++ + KD L L P +PR Sbjct: 61 -VNYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALTETLIKRGHAYVAENGDVMFAIDTDPDYGLLSRQDLEQLQAGARVEVAN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWTSPWGEGRPGWHIECSAMNGKELGHHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGPYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R +L HYR +++T + L +A L + + + PA + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTSLRGTDANAQPAGGEAFEAQFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L LARE + + L + A +LG +E EH ++ Sbjct: 346 MNDDFNTPEAYSVLFDLAREVNRLKTVNMEAANGLAAVLRKLAKVLGLLEQQPEHFLQSG 405 Query: 406 SIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + A IE L+Q+R K K +++AD R L + G +LED G + T W Sbjct: 406 AQADDADEVEKIEALIQQRNDARKNKDWAAADAARDALTAMGIVLED------GPQGTTW 459 Query: 458 KQ 459 ++ Sbjct: 460 RR 461 >gi|169824112|ref|YP_001691723.1| cysteinyl-tRNA synthetase [Finegoldia magna ATCC 29328] gi|229558634|sp|B0S0W3|SYC_FINM2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167830917|dbj|BAG07833.1| cysteinyl-tRNA synthetase [Finegoldia magna ATCC 29328] Length = 462 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 183/474 (38%), Positives = 259/474 (54%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLYNTLTRKKEEFKPIKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V +V N TDIDDKII +A+ E N IT K Q ++ + + L T P Sbjct: 59 NVKFVSNFTDIDDKIINKAKDE------NIDFREITKKYIQAYLDNVSGLNFDEDDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATEYIDEMIKFVKTLEDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNS 172 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK R EP WESPWG GRPGWH+ECS MS LG DIH GG DL F Sbjct: 173 EKKNPMDFALWKKRKEESEPAWESPWGMGRPGWHLECSVMSKTILGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS C AN W+HN + ++ KMSKS NF + ++ + Sbjct: 233 PHHENEIAQSETCTGAHF---ANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EK 282 Query: 301 SWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPA 350 + VIRL +L HYR PIDF ++ RL A+ L++ + S+ K D Sbjct: 283 EFDLEVIRLWLLSVHYRNPIDFSHDTLVATKNSLDRLYTAKKFLNRILENSSEKEEKDDN 342 Query: 351 VLS-------ALYNDLNTVSAIQALHKLARESTKNHD-------LLP---IFNASAHILG 393 + + A+ +D+NT AI L + KN+D LL + + +++LG Sbjct: 343 IKTFREKFEQAMDDDINTADAISVLFDFIKYINKNYDENTSKNILLDAKKLMDDISYVLG 402 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I + KE + ++ IE+L+++R K K F AD IR +L S G +L+D ++ Sbjct: 403 I-LFKED-DDDLDSEIEELIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRD 454 >gi|227513730|ref|ZP_03943779.1| cysteinyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577] gi|227522453|ref|ZP_03952502.1| cysteinyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290] gi|227083049|gb|EEI18361.1| cysteinyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577] gi|227090405|gb|EEI25717.1| cysteinyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290] Length = 468 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 185/476 (38%), Positives = 257/476 (53%), Gaps = 55/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK +F+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y G K Sbjct: 2 LQIFNTLTRKKEKFEPVTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+ H ++ I K F++DT L PR Sbjct: 61 -VNYVSNFTDVDDKMINAARENHTTV------GAIAEKYINAFMQDTAALNISKDVTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT +IP++I ++N+ G+AY + + F P YG +D+ ++G Sbjct: 114 ATQNIPEIIAFVKNLEDQGYAYNVDGNVYFRARKFPTYGELPHINVDQLEVGASQHVEKG 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK+S E W+SPWG+GRPGWHIECS MS YLGK DIHGGG DL Sbjct: 174 EFEQKEDPIDFALWKKSKGDEISWDSPWGKGRPGWHIECSVMSMKYLGKTLDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 IFPHHENE AQS A+ + W+HNGF+ + + KMSKS GNFIT+++LL KK Sbjct: 234 IFPHHENERAQS-EAETHQTFVKYWMHNGFVTIGEDNEKMSKSLGNFITVHDLL--KKID 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 G+ VIRL M THYR PI ++ + EA+ L K P+ Sbjct: 291 GQ-----VIRLLMSTTHYRRPIQYSDASVQEAKSNLKKLQTAFNNSTYRLHNAEAGSDPK 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS----------- 388 T I + A+ +D N + I A+++LA+ S + +F S Sbjct: 346 TEQEVRQIVADFIDAMDDDFNVQNGIAAVYELAKFSNMYSERNVVFQNSLQFIINTLKQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I GI++ + L + I L+ ER K F +D IR++L+++G +LED Sbjct: 406 AAIFGIKLEQSELKDD---EIWALIHERQQARANKDFIRSDEIREELKARGIVLED 458 >gi|224111652|ref|XP_002315932.1| predicted protein [Populus trichocarpa] gi|222864972|gb|EEF02103.1| predicted protein [Populus trichocarpa] Length = 532 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 182/509 (35%), Positives = 267/509 (52%), Gaps = 83/509 (16%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++K+YN++ ++ F++ P + MYVCG T YDF+H+G+AR + FD+L+R L++ Sbjct: 5 EELKLYNSMTQQKEVFKSRIPGKVSMYVCGVTSYDFSHLGHARAAVAFDILFRYLQHLGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRN TDIDDKII RA + I + ++S+ ++++ D T L CL PTHQ Sbjct: 65 E--VTYVRNFTDIDDKIIRRANE------IGEDPLSLSSRFCEEYLVDMTDLQCLIPTHQ 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T+H+ Q+ +I II AY ++ F + PNYG S ++++ + G RV Sbjct: 117 PRVTDHVEQIKDMITQIIEKDCAYAVEGDVFFAVNKSPNYGQLSGQRLENNRAGERVAVD 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NPADF LWK + P EP WESPWG GRPGWHIECSAMS+ YL FDIHGGG+DLIF Sbjct: 177 SRKRNPADFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTFKFDIHGGGIDLIF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSC A E + + W+HNG + KMSKS GNF TI ++ E R Sbjct: 237 PHHENEIAQSCAACE-ESSVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE------RYH 289 Query: 303 PAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSKGIID 348 P +R ++ HYR P++++V Q L + E L + + S +G Sbjct: 290 PL-ALRHFLISAHYRSPLNYSVSQLESSSDAVFYIYQTLQDCEDALLPFQEGSLKEGAGQ 348 Query: 349 PAVLSA-------------------LYNDLNT---------------------------- 361 A L A + +DLNT Sbjct: 349 NANLVAITADAQKCISRLHEDFETKMSDDLNTSPLLTGAFQEALKVVNGSLGMLKKKQQK 408 Query: 362 ---VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA---IEKLVQE 415 +S I+++ ++ +E T+ +L +F ++ K K + + L+++ Sbjct: 409 KQQLSLIRSVTEVKKEVTEVLRILGLFPPCTCAEVLQQLKGKALKRAGLTEDDVMSLIED 468 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILED 444 R + K + F +D IR L ++G L D Sbjct: 469 RAVARKSQDFKKSDQIRTDLSARGIALMD 497 >gi|194432744|ref|ZP_03065029.1| cysteinyl tRNA synthetase [Shigella dysenteriae 1012] gi|194419006|gb|EDX35090.1| cysteinyl tRNA synthetase [Shigella dysenteriae 1012] Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHITEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|251799666|ref|YP_003014397.1| cysteinyl-tRNA synthetase [Paenibacillus sp. JDR-2] gi|247547292|gb|ACT04311.1| cysteinyl-tRNA synthetase [Paenibacillus sp. JDR-2] Length = 470 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 251/476 (52%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F +P ++MYVCGPTVYD+ HIGNARP+I FDV+ R L Y Sbjct: 3 VQIYNTLTRSKEAFVPQEPGKVKMYVCGPTVYDYIHIGNARPVIFFDVVRRYLEY--AGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I++A Q ++P + K F +D L T PR Sbjct: 61 DVNYIVNFTDVDDKLIKKAEQLGLTVPE------VADKFINAFNEDIASLGVHKATLNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP +I IQ ++ G+AY + ++ + TS YG S + ++E + G R+ Sbjct: 115 VTEHIPSIIAFIQGLVDTGYAYASEGDVYYRTSKFEEYGKLSHQNLEELQFGIRIEVGER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK P E WESPWG GRPGWHIECSAM+ YLG DIHGGG DL FPH Sbjct: 175 KENPQDFVLWKGVKPGEINWESPWGPGRPGWHIECSAMAREYLGDTLDIHGGGHDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E+AQS ++ AN W+HNG++++ KMSKS GN IT+NEL++ K PA Sbjct: 235 HECEVAQSEALTG-KQLANYWMHNGYIHINNEKMSKSLGNGITVNELVKRVK------PA 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIIDPAVLSAL- 355 IR +L THYR P++FT + + +AE + + + ST G + A L Sbjct: 288 -AIRYFILSTHYRSPLNFTDETIAQAENSVDRIANCAANLKHRLSTFDGQSEGAAAGELG 346 Query: 356 --------------YNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHL 401 +D NT AI A+ +L E+ N + +S I + E + Sbjct: 347 DRIAQLKAQFEAKMGDDFNTPDAITAVFELVTEA--NQYMNRADASSEGIAALLAALEQM 404 Query: 402 NKNISI-------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N + + I+ L+ ER K ++ AD IR L KG LED Sbjct: 405 NTVLGLLPEAGTDAELLDDEIDALIVERTEARAAKNWARADEIRNLLTEKGIALED 460 >gi|262404192|ref|ZP_06080747.1| cysteinyl-tRNA synthetase [Vibrio sp. RC586] gi|262349224|gb|EEY98362.1| cysteinyl-tRNA synthetase [Vibrio sp. RC586] Length = 459 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/487 (38%), Positives = 264/487 (54%), Gaps = 60/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------SETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLDQLQAGARVDVEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A IR ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRTVPAAGGEEYLTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K+ DL NASA LG +C+ L I I Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDLT---NASA--LGSLMCE--LADVIGILYQEP 398 Query: 408 --------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L++ R K +++AD R +L G +LED G Sbjct: 399 EAFFQGGAEDEEAEQIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPN 452 Query: 454 MTRWKQK 460 T W++K Sbjct: 453 GTTWRRK 459 >gi|70731271|ref|YP_261012.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] gi|109894922|sp|Q4K9S1|SYC_PSEF5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68345570|gb|AAY93176.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] Length = 460 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 178/478 (37%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLITRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + +A +T + +D RL P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEAFEALTERMIAAMHEDEARLNIKKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHTMIQTLIDKGYAYAPGNGDVYYRVGKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKAAKPGEPSWPSPWGDGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA--------L 355 V+R ++ +HYR I+++ L +A+ L ++ + PA A + Sbjct: 286 PEVVRYLLVASHYRSAINYSEDNLKDAKGALERFYHALKGLPKVAPAGGEAFVERFTQVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIDAAAGLAARLKELASVLGVLQLEADDFLQAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G ILED G+ T W+ Sbjct: 406 EGRVDGAQVEALIQARLAARANKDWAESDRIRDQITAMGVILED------GKGGTTWR 457 >gi|323191193|gb|EFZ76457.1| cysteinyl-tRNA synthetase [Escherichia coli RN587/1] Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKGGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|327480668|gb|AEA83978.1| cysteinyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166] Length = 462 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 186/467 (39%), Positives = 259/467 (55%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ ++ + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR+ + Sbjct: 4 LAIYNTLSKAKEPFRPLEGNKVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRHRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + + + +D TRL L P +PR Sbjct: 63 -VTYVRNITDIDDKIIRRASEN------GEPFQALVERMIAAMHEDETRLNVLRPDVEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G AY N ++ + YG SRRKI++ K+G R+ Sbjct: 116 ATDHIAGMHTMIQTLIDKGFAYAPGNGDVYYRVGKFVGYGKLSRRKIEDLKIGARIEVDE 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 176 AKEDPLDFVLWKGAKPGEPSWDSPWGPGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 236 HHENEIAQSEAATG-KLYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALY 356 V+R ++ +HYR PI+++ L EA+ L ++ P+ + G A +A+ Sbjct: 288 PEVVRYLLVSSHYRSPINYSEDSLREAKSALERFYNGLKGLPEAQPAGGDEFVARFAAVM 347 Query: 357 -NDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIE-------VCKEH 400 +D N+ A L ++ RE + + L A +LG+ + Sbjct: 348 DDDFNSPEACAVLFEMIREVNRLRESDLTAAAALAARLKELAGVLGVLQLEPGAFLQAGA 407 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K + +E L+ RL K + +D IR QL + G +LED K Sbjct: 408 AGKVDAAEVEALIAARLAARAEKNWGESDRIRDQLTAMGVVLEDGKG 454 >gi|325496424|gb|EGC94283.1| cysteinyl-tRNA synthetase [Escherichia fergusonii ECD227] Length = 461 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNQMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|239625541|ref|ZP_04668572.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519771|gb|EEQ59637.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 469 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 188/492 (38%), Positives = 258/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF + P ++MYVCGPTVY+ HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRRKEEFVPLTPGEVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E DA ++ + ++ KD + T P+ Sbjct: 60 -VKYVSNFTDVDDKIIKKAIEEGV-----DA-DTVSQRYIEECKKDMAAMNVKPATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +IQ +I GHAY A + + F T S YG S + +DE + G R V Sbjct: 113 ATQEICGMLEMIQTLIDKGHAYVAKDGTVYFRTGSFKEYGKLSHKNLDELQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P+DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEGKEDPSDFVLWKPKKEGEPFWESPWCNGRPGWHIECSVMSKRYLGEQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECAND-KPFATYWMHNAFLNIDNKKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTS 343 + V+R ML HYR P++F+ V +L + E QT Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERILTCVDKLRDLEAKAEGAAQTCAE 344 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 +G ++ A A+ +D NT AI + +L + + D L Sbjct: 345 QGSMEEAGKLLGRFEEAMDDDFNTADAISVVFELVKLANTTADSGSTKAYVSFLKKNIEQ 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + IE+++ R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVLGI--ITEKKEEVLDSDIEEMIAARQQARKDKDFALADEIRGKLLDMGIVLEDTRE 462 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 463 G------VKWKR 468 >gi|85058683|ref|YP_454385.1| cysteinyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans'] gi|109894945|sp|Q2NV45|SYC_SODGM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|84779203|dbj|BAE73980.1| cysteinyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'] Length = 457 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 258/477 (54%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKIFNTLTRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDVVTRYLRYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDI+DKII RA + + +T + + D +L L P +PR Sbjct: 61 -VNYVRNITDIEDKIIRRAAEN------GETFHQLTERMISEMHSDFDQLNILRPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I +I L+ +I HAY AN +++F S +YG SR+ +++ + G RV Sbjct: 114 ATHYIDAIIELVGQLIDRDHAYVAANGDVMFAVDSDSDYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DLIFP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNGRQLGHHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N+W+H G + ++ KMSKS GNF T+ ++L R + Sbjct: 234 HHENEIAQSTCA-HDGPYVNVWMHAGMVMVDREKMSKSLGNFFTVRDVL-------RYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + PA ++A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYIALRGTDATAVPAGGDHFVAQFIAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNASAHILGI-----EVCKEHLN 402 + +D NT A L +ARE + + A +LG+ + Sbjct: 346 MDDDFNTPKAYSVLFDIAREVNRLKSEQPAAQGMAATLRQLAGVLGLLEQEPAAFLQQGA 405 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ IE L+Q+R K ++++ AD R +L + G +LED G + T W++ Sbjct: 406 AEDNVMIEALIQQRNDARKARQWALADEARDKLTALGIVLED------GPQGTTWRR 456 >gi|169633852|ref|YP_001707588.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii SDF] gi|229558610|sp|B0VS71|SYC_ACIBS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169152644|emb|CAP01639.2| cysteinyl-tRNA synthetase [Acinetobacter baumannii] Length = 473 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 193/477 (40%), Positives = 268/477 (56%), Gaps = 55/477 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T + +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTMRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N WIH GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWIHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTETLDQSFVER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----------------STKNHDLLPIFNASAH--- 390 +A+ +D NT A+ L +L +E ST H L I H Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRH-LTNILGLVQHNVD 408 Query: 391 -ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L ++ +E L + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 409 DFLKSDIGQEALALS-DAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTR 464 >gi|167837113|ref|ZP_02463996.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis MSMB43] Length = 465 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 187/470 (39%), Positives = 260/470 (55%), Gaps = 45/470 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ HIG+AR ++VFDV+ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDVVQRWLRA--A 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +TS+ T+ D L P + Sbjct: 60 GYRVTYVRNITDIDDKIIRRA------VENGETIQSLTSRFTRAMNVDFDALGVERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPQDPAGASWESKYGAGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ D A L Sbjct: 288 --KFDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRL-YTALKDATPDVAPLDWSEAH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI--EVCKEHLNK 403 +A+ +D NT A+ L +LA E T+ L A +LG+ +E L + Sbjct: 345 ARRFAAAMNDDFNTAVAVAVLFELATEVNRTREPALARQLKRLAGVLGLLGREPREFLQQ 404 Query: 404 NISIA---------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A IE + R+ + K ++ AD IR +L G LED Sbjct: 405 AAGAARAGALEPEEIEAKIAARVAAKQAKNYAEADRIRAELLEAGIALED 454 >gi|108706130|gb|ABF93925.1| Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] gi|108706131|gb|ABF93926.1| Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] gi|218192068|gb|EEC74495.1| hypothetical protein OsI_09969 [Oryza sativa Indica Group] gi|222624173|gb|EEE58305.1| hypothetical protein OsJ_09367 [Oryza sativa Japonica Group] Length = 528 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 188/520 (36%), Positives = 270/520 (51%), Gaps = 95/520 (18%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++N++ +K F+ + +RMYVCG T YDF+HIG+AR + FDVLYR L++ E Sbjct: 10 QLELFNSMTKKKELFEPLVEGKVRMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKFLGYE 69 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + + ++ ++S+ +F+ D +L CL PT +P Sbjct: 70 --VEYVRNFTDIDDKIIKRANE------AGETVTSLSSRFINEFLLDMAQLQCLPPTCEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T+HI +I LI I+ +G AY ++ F + P Y S S RK+D G+RV Sbjct: 122 RVTDHIEHIIELITKIMENGKAYAMEGDVYFSVDTFPEYLSLSGRKLDHNLAGSRVAVDT 181 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP W+SPWGRGRPGWHIECSAMS+HYLG VFDIHGGG DLIFP Sbjct: 182 RKRNPADFALWKAAKEGEPFWDSPWGRGRPGWHIECSAMSAHYLGHVFDIHGGGKDLIFP 241 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A E W+HNGF+N + +KMSKS+ NF TI ++++ + Sbjct: 242 HHENELAQSRAA-YPESEVKCWMHNGFVNKDDQKMSKSDKNFFTIRDIIDL-------YH 293 Query: 304 APVIRLAMLMTHYREPID--------------FTVQRLTEAEILLSKW-------PQTST 342 +R ++ THYR ++ + Q L + E +LS++ P Sbjct: 294 PMALRFFLMRTHYRGDVNHSDKALEIASDRVYYIYQTLYDCEEVLSQYRGENISVPVPVE 353 Query: 343 SKGIID---PAVLSALYNDLNTVSAIQALHKLARESTKNHD------------------- 380 + +++ L ++ +DL T + L + N + Sbjct: 354 EQDMVNKHHSEFLESMADDLRTTDVLDGFTDLLKAINSNLNDFKKLQQKLEQQKKKQQQQ 413 Query: 381 -----------------LLPIFNASAH------ILGI-------EVCKEHLNKNISIA-- 408 + +F ILG+ E K+ +K + A Sbjct: 414 KQQKQKQQQAQKQPEEYIQAMFALETEIKNKISILGLMPPSSLAEALKQLKDKALKRAGL 473 Query: 409 IEKLVQE----RLILLKMKKFSSADYIRKQLESKGFILED 444 E+L+QE R K K+F +D IRKQL SKG L D Sbjct: 474 TEELLQEQIEQRTAARKNKQFDVSDQIRKQLGSKGIALMD 513 >gi|15641850|ref|NP_231482.1| cysteinyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591342|ref|ZP_01678630.1| cysteinyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121730275|ref|ZP_01682651.1| cysteinyl-tRNA synthetase [Vibrio cholerae V52] gi|147673703|ref|YP_001217382.1| cysteinyl-tRNA synthetase [Vibrio cholerae O395] gi|227081977|ref|YP_002810528.1| cysteinyl-tRNA synthetase [Vibrio cholerae M66-2] gi|229508055|ref|ZP_04397560.1| cysteinyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229511706|ref|ZP_04401185.1| cysteinyl-tRNA synthetase [Vibrio cholerae B33] gi|229518845|ref|ZP_04408288.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC9] gi|229607616|ref|YP_002878264.1| cysteinyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254848934|ref|ZP_05238284.1| cysteinyl-tRNA synthetase [Vibrio cholerae MO10] gi|255745392|ref|ZP_05419341.1| cysteinyl-tRNA synthetase [Vibrio cholera CIRS 101] gi|298498113|ref|ZP_07007920.1| cysteinyl-tRNA synthetase [Vibrio cholerae MAK 757] gi|11387140|sp|Q9KQZ9|SYC_VIBCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631647|sp|A5F763|SYC_VIBC3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781697|sp|C3LNF1|SYC_VIBCM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|9656376|gb|AAF94996.1| cysteinyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546806|gb|EAX56972.1| cysteinyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121627977|gb|EAX60538.1| cysteinyl-tRNA synthetase [Vibrio cholerae V52] gi|146315586|gb|ABQ20125.1| cysteinyl-tRNA synthetase [Vibrio cholerae O395] gi|227009865|gb|ACP06077.1| cysteinyl-tRNA synthetase [Vibrio cholerae M66-2] gi|227013746|gb|ACP09956.1| cysteinyl-tRNA synthetase [Vibrio cholerae O395] gi|229343534|gb|EEO08509.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC9] gi|229351671|gb|EEO16612.1| cysteinyl-tRNA synthetase [Vibrio cholerae B33] gi|229355560|gb|EEO20481.1| cysteinyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229370271|gb|ACQ60694.1| cysteinyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254844639|gb|EET23053.1| cysteinyl-tRNA synthetase [Vibrio cholerae MO10] gi|255737222|gb|EET92618.1| cysteinyl-tRNA synthetase [Vibrio cholera CIRS 101] gi|297542446|gb|EFH78496.1| cysteinyl-tRNA synthetase [Vibrio cholerae MAK 757] Length = 459 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENAETC------ESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE T L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|226951456|ref|ZP_03821920.1| cysteinyl-tRNA synthetase [Acinetobacter sp. ATCC 27244] gi|226837804|gb|EEH70187.1| cysteinyl-tRNA synthetase [Acinetobacter sp. ATCC 27244] Length = 473 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 190/475 (40%), Positives = 267/475 (56%), Gaps = 51/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF + I +YVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRNEGQIDIYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII RA + ++I +T++ +D L C+AP P+AT Sbjct: 64 RYIRNITDIDDKIIARANEN------GESIQQLTARFIDAMNEDAADLGCVAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I ++ G AY A+N ++ F+ S YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMISTLVNKGAAYPASNGDVYFEVSKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG+GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPAWASPWGKGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EATTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLS---- 353 VIR ++ +HYR P++F+ L EA+ LS++ Q + +D S Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALSRFYHSFKAYQQVYGQKTVDALEQSFVER 349 Query: 354 ---ALYNDLNTVSAIQALHKLARE---------STKNHDLLPIFNASAHILGI------E 395 A+ +D NT A+ L +L +E + + L +ILG+ E Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQAEQAMVLYSTLRQLTNILGLVQHNVDE 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K + ++ IE L+Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQDALALSDTDIEDLIQQRVDAKKAKDFAKADGIRQSLLDQGVVLEDTR 464 >gi|190568970|ref|ZP_03021871.1| cysteinyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|190559894|gb|EDV13878.1| cysteinyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] Length = 465 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 264/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I ++ + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IANRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|15800263|ref|NP_286275.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 EDL933] gi|15829842|ref|NP_308615.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|168747790|ref|ZP_02772812.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|168754640|ref|ZP_02779647.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|168768489|ref|ZP_02793496.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|168774602|ref|ZP_02799609.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|168779029|ref|ZP_02804036.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|168786387|ref|ZP_02811394.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC869] gi|195936093|ref|ZP_03081475.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi|208808572|ref|ZP_03250909.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208815777|ref|ZP_03256956.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208822926|ref|ZP_03263244.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209397071|ref|YP_002269179.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|217324178|ref|ZP_03440262.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254791714|ref|YP_003076551.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|261224014|ref|ZP_05938295.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000] gi|261257708|ref|ZP_05950241.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966] gi|291281437|ref|YP_003498255.1| Cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|21264001|sp|Q8XCT9|SYC_ECO57 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710840|sp|B5YPP1|SYC_ECO5E RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|12513423|gb|AAG54883.1|AE005233_9 cysteine tRNA synthetase [Escherichia coli O157:H7 str. EDL933] gi|13360046|dbj|BAB34011.1| cysteine tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|187769725|gb|EDU33569.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|188017727|gb|EDU55849.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|189003129|gb|EDU72115.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|189357976|gb|EDU76395.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|189362536|gb|EDU80955.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|189373672|gb|EDU92088.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC869] gi|208728373|gb|EDZ77974.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208732425|gb|EDZ81113.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208737119|gb|EDZ84803.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209158471|gb|ACI35904.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|209777878|gb|ACI87251.1| cysteine tRNA synthetase [Escherichia coli] gi|209777880|gb|ACI87252.1| cysteine tRNA synthetase [Escherichia coli] gi|209777882|gb|ACI87253.1| cysteine tRNA synthetase [Escherichia coli] gi|209777884|gb|ACI87254.1| cysteine tRNA synthetase [Escherichia coli] gi|209777886|gb|ACI87255.1| cysteine tRNA synthetase [Escherichia coli] gi|217320399|gb|EEC28823.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254591114|gb|ACT70475.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|290761310|gb|ADD55271.1| Cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|320192951|gb|EFW67591.1| Cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212] gi|320638305|gb|EFX08030.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101] gi|320643709|gb|EFX12839.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89] gi|320649025|gb|EFX17612.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687] gi|320654603|gb|EFX22608.1| cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660389|gb|EFX27860.1| cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905] gi|320665083|gb|EFX32180.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61] gi|326341299|gb|EGD65091.1| Cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044] gi|326345924|gb|EGD69663.1| Cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125] Length = 461 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKVEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|302385700|ref|YP_003821522.1| cysteinyl-tRNA synthetase [Clostridium saccharolyticum WM1] gi|302196328|gb|ADL03899.1| cysteinyl-tRNA synthetase [Clostridium saccharolyticum WM1] Length = 467 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 190/475 (40%), Positives = 261/475 (54%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF +++P I+MYVCGPTVY+ HIGNARP+IVFD + R Y E Sbjct: 1 MKIYNTLSRQKEEFVSLEPGKIKMYVCGPTVYNLIHIGNARPIIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TDIDDKII++A +E DA + I+ + ++ KD L T P Sbjct: 60 -VNFVSNFTDIDDKIIKKAIEEGV-----DA-NTISKRYIEECKKDMESLNIKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +I+ +I GHAYEA + + F T + YG S + +++ + G R V Sbjct: 113 ATEEICGMLDMIEKLIASGHAYEAADGTVYFRTKTFGEYGKLSHKNLEDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P+DF+LWK EP WESPW +GRPGWHIECS MS YLG DIH GG DL Sbjct: 173 GEDGKEDPSDFVLWKPKKEGEPYWESPWCQGRPGWHIECSVMSKKYLGDQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ E A W+HNGFLN++ +KMSKS GNF T+ ++ G Sbjct: 233 IFPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNKKMSKSLGNFFTVRDI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID-- 348 + V+R ML HYR PI+F+ ++R+ A L T+T++ +++ Sbjct: 285 KYDLQVLRFFMLSAHYRSPINFSADLMEASKNGLERILTAVDKLKSLEATATTEKLLEGE 344 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLAR--ESTKNHD--------LLPIFNASA 389 +A+ +D NT AI + +L + ST N D L Sbjct: 345 DNNSVQELVSKYEAAMDDDFNTADAISVIFELVKLSNSTANGDSSREYVTYLRDTIERLC 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI E + + IE ++ R K K F+ AD IR +L KG +LED Sbjct: 405 EVLGI--ITEKEEEILDDEIEAMIAGRQQARKDKNFALADEIRGKLLEKGIVLED 457 >gi|294650979|ref|ZP_06728319.1| cysteine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194] gi|292823080|gb|EFF81943.1| cysteine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194] Length = 473 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 190/475 (40%), Positives = 267/475 (56%), Gaps = 51/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF + I +YVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRNEGQIDIYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII RA + ++I +T++ +D L C+AP P+AT Sbjct: 64 RYIRNITDIDDKIIARANEN------GESIQQLTARFIDAMNEDAANLGCVAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I ++ G AY A+N ++ F+ S YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMISTLVNKGAAYPASNGDVYFEVSKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG+GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPAWASPWGKGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EATTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLS---- 353 VIR ++ +HYR P++F+ L EA+ LS++ Q + +D S Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALSRFYHSFKAYQQVYGQKTVDALEQSFVER 349 Query: 354 ---ALYNDLNTVSAIQALHKLARE---------STKNHDLLPIFNASAHILGI------E 395 A+ +D NT A+ L +L +E + + L +ILG+ E Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQAEQATVLYSTLRQLTNILGLVQHNVDE 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K + ++ IE L+Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQDALALSDTDIEDLIQQRVDAKKAKDFAKADGIRQSLLDQGVVLEDTR 464 >gi|162139463|ref|YP_001172566.2| cysteinyl-tRNA synthetase [Pseudomonas stutzeri A1501] gi|187631654|sp|A4VL73|SYC_PSEU5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 259/467 (55%), Gaps = 40/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ ++ + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR+ + Sbjct: 3 LAIYNTLSKAKEPFRPLEGNKVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRHRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + + + +D TRL L P +PR Sbjct: 62 -VTYVRNITDIDDKIIRRASEN------GEPFQALVERMIAAMHEDETRLNVLRPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G AY N ++ + YG SRRKI++ K+G R+ Sbjct: 115 ATDHIAGMHTMIQTLIDKGFAYAPGNGDVYYRVGKFVGYGKLSRRKIEDLKIGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 AKEDPLDFVLWKGAKPGEPSWDSPWGPGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KLYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA-VLSAL 355 V+R ++ +HYR PI+++ L EA+ L ++ P+ + G A +A+ Sbjct: 287 PEVVRYLLVSSHYRSPINYSEDSLREAKSALERFYNGLKGLPEAQPAGGDEFVARFAAAM 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH--------ILGIEVCKEH------- 400 +D N+ A L ++ RE + + A+ +LG+ + Sbjct: 347 DDDFNSPEACAVLFEMIREVNRLREADLAAAAALAARLKVLAGVLGVLQLEPDAFLQAGA 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K + +E L+ RL K + +D IR QL + G +LED K Sbjct: 407 AGKVDAAEVEALIAARLAARAEKNWGESDRIRDQLTAMGVVLEDGKG 453 >gi|303234834|ref|ZP_07321459.1| cysteine--tRNA ligase [Finegoldia magna BVS033A4] gi|302493952|gb|EFL53733.1| cysteine--tRNA ligase [Finegoldia magna BVS033A4] Length = 462 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 183/474 (38%), Positives = 258/474 (54%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLYNTLTRKKEEFKPIKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V +V N TDIDDKII +A+ E N IT K Q ++ + + L T P Sbjct: 59 NVKFVSNFTDIDDKIINKAKDE------NIDFREITKKYIQAYLNNVSGLNFDEDDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATEYIDEMIKFVKTLEDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNS 172 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK R EP WESPWG GRPGWH+ECS MS LG DIH GG DL F Sbjct: 173 EKKNPMDFALWKKRKEESEPAWESPWGMGRPGWHLECSVMSKSILGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS C AN W+HN + ++ KMSKS NF + ++ + Sbjct: 233 PHHENEIAQSETCTGAHF---ANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EK 282 Query: 301 SWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPA 350 + VIRL +L HYR PIDF ++ RL A+ L++ + S+ K D Sbjct: 283 EFDLEVIRLWLLSVHYRNPIDFSHDTLVATKNSLDRLYTAKKFLNRILENSSEKEEKDDN 342 Query: 351 VLS-------ALYNDLNTVSAIQALHKLARESTKNHD-------LLP---IFNASAHILG 393 + + A+ +D+NT AI L + KN+D LL + + +++LG Sbjct: 343 IKTFREKFEQAMDDDINTADAISVLFDFIKYINKNYDENTSKNILLDAKKLMDDISYVLG 402 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I + KE + ++ IE L+++R K K F AD IR +L S G +L+D ++ Sbjct: 403 I-LFKED-DDDLDSEIEDLIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRD 454 >gi|71065916|ref|YP_264643.1| cysteinyl-tRNA synthetase [Psychrobacter arcticus 273-4] gi|109894925|sp|Q4FRZ9|SYC_PSYA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71038901|gb|AAZ19209.1| cysteinyl-tRNA synthetase [Psychrobacter arcticus 273-4] Length = 488 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 262/487 (53%), Gaps = 63/487 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ IY++L + F+ + + MYVCG TVYD+ HIG+AR M+ FD+ R L + Sbjct: 13 QLVIYDSLTGRKQSFKPLVEGKVGMYVCGMTVYDYCHIGHARVMVGFDMAVRWLAQLGYD 72 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITDIDDKII RA + + I +T + +D T L C +P +P Sbjct: 73 --VNYVRNITDIDDKIIARAAEN------GEEIGALTQRFITAMHEDATALGCQSPNAEP 124 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT++I +M +I+ ++ + +AY +N ++ + S +YG S+R +D+ + G+RV + Sbjct: 125 RATDYIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDDMQAGSRVEVE 184 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK + P EP W S WG+GRPGWHIECSAMS+ LG FDIHGGG DL F Sbjct: 185 NDKRNPFDFVLWKAAKPDEPQWVSSWGQGRPGWHIECSAMSTKCLGNTFDIHGGGHDLQF 244 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A E N W+H GF+N++G KMSKS GNF TI +++ + Sbjct: 245 PHHENEIAQSEAATGCEYARN-WMHVGFINVDGEKMSKSLGNFFTIRDVMA-------KY 296 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKG---IIDPAVLS-- 353 +R +L +HYR ++F+ L EA LS+ Q KG I+D A+++ Sbjct: 297 LPETVRFFLLSSHYRSQVNFSDSALDEAHNSLSRLYQALKVVEQQKGQTLIVDDALINNA 356 Query: 354 -----------ALYNDLNTVSAIQALHKLARESTKNHDLLPI---------FNASAHILG 393 A+ +D N+ +AI L LAR+ K + I A A L Sbjct: 357 YASAPGQDFIKAMNDDFNSSTAISVLFGLARDINKASKVEDIESAWQLAQQLKALAQTLN 416 Query: 394 I--------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 I E ++ L AI+ L+ ER K F+ AD IR QL+ G Sbjct: 417 ILQQPVQQFLQAVIGEAAEDGLTDE---AIDSLIIERADAKTNKNFARADEIRIQLKDAG 473 Query: 440 FILEDYK 446 LED + Sbjct: 474 IELEDSR 480 >gi|323494384|ref|ZP_08099494.1| cysteinyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] gi|323311367|gb|EGA64521.1| cysteinyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] Length = 460 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 182/481 (37%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I+ + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPINAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIIELVEKLIERGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQ-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 + +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 SETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLTTPAAGGEEYVSRFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE K D L + A ++GI K Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRIKAEDIAAASALGSLMRELADVIGILYQDPEAFLKGD 405 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +A IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRASKDWANADLARDKLNEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|114048058|ref|YP_738608.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-7] gi|123030490|sp|Q0HTK4|SYC_SHESR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|113889500|gb|ABI43551.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-7] Length = 461 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 183/480 (38%), Positives = 259/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P + MYVCG TVYD HIG+ R + FD++ R LRY E Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITDIDDKII+RA + + + +T + + KD L + P +PR Sbjct: 63 -VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMIRPDFEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A+ +++F +S P YG S + +++ + G RV Sbjct: 116 ATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDD 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 176 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 236 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 +R +L HYR I+++ + L +A L + + + PA +A Sbjct: 288 PETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAPAPAEEFVAKFKAA 347 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNAS------AHILGI------EVCKEH 400 + +D NT A L + RE K D+ + A +LG+ K Sbjct: 348 MDDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAVAMKQLADVLGLLHQAPDAFFKGE 407 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R +L G +LED G T W++K Sbjct: 408 GSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLED------GPSGTTWRKK 461 >gi|47569824|ref|ZP_00240494.1| cysteinyl-tRNA synthetase [Bacillus cereus G9241] gi|47553517|gb|EAL11898.1| cysteinyl-tRNA synthetase [Bacillus cereus G9241] Length = 465 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 264/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+++ ILED Sbjct: 407 GLELAQEDL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKNRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|254724230|ref|ZP_05186015.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A1055] Length = 465 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSIGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|154485049|ref|ZP_02027497.1| hypothetical protein EUBVEN_02770 [Eubacterium ventriosum ATCC 27560] gi|149734002|gb|EDM50121.1| hypothetical protein EUBVEN_02770 [Eubacterium ventriosum ATCC 27560] Length = 470 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 180/476 (37%), Positives = 256/476 (53%), Gaps = 52/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K EF ++ ++MYVCGPTVY+ HIGNARPMI+FD R L Y + Sbjct: 1 MKIYNTLTKKKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIIFDTFRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + ++ KD L T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGTTA------EEISQRYIKECKKDMHDLNIEPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I+ +I G+AY+A+ + + T +YG S++ ID+ + G R V Sbjct: 113 ATQEIDGMIEMIKTLIDKGYAYDADGTVYYRTRKFKDYGKLSKKNIDDLEAGHRDIKVAG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG DIH GG DLI Sbjct: 173 EESKEDPLDFVLWKPKKEGEPSWPSPWSDGRPGWHIECSVMSKKYLGDEIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E + W+HNGFLN+ +KMSKS GNF T+ ++ E Sbjct: 233 FPHHENEIAQSEAANGCE-FSKYWMHNGFLNINNKKMSKSLGNFFTVRDISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------------WPQTSTSK 344 + V+R ML HYR P++F+ + A+ L + T Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSDDLMESAKNGLERIITSGAKIRDIISNGKDGKVTDAEA 344 Query: 345 GIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 ++D A A+ +D NT +AI A+ +L + + N + + I + Sbjct: 345 KLLDEAKEYITKFEEAMDDDCNTANAISAVFELVKFANSNLNEGSTKEFAAGVYEILDKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++LGI + KE IE+++ +R K + F+ AD IR +L +KG +L+D Sbjct: 405 CNVLGIILEKEEEKVGDEDYIEEMIAKRAQAKKDRDFAMADQIRDELAAKGIVLKD 460 >gi|30260280|ref|NP_842657.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Ames] gi|47525344|ref|YP_016693.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183123|ref|YP_026375.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|49481691|ref|YP_034442.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145127|ref|YP_081701.1| cysteinyl-tRNA synthetase [Bacillus cereus E33L] gi|65317550|ref|ZP_00390509.1| COG0215: Cysteinyl-tRNA synthetase [Bacillus anthracis str. A2012] gi|165873141|ref|ZP_02217757.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167635089|ref|ZP_02393406.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|167641949|ref|ZP_02400184.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|170689572|ref|ZP_02880758.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|170707565|ref|ZP_02898018.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|177655593|ref|ZP_02936974.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|196041797|ref|ZP_03109087.1| cysteine--tRNA ligase [Bacillus cereus NVH0597-99] gi|218901292|ref|YP_002449126.1| cysteinyl-tRNA synthetase [Bacillus cereus AH820] gi|227812763|ref|YP_002812772.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. CDC 684] gi|229601947|ref|YP_002864741.1| cysteine--tRNA ligase [Bacillus anthracis str. A0248] gi|254684407|ref|ZP_05148267.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066] gi|254733756|ref|ZP_05191471.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Western North America USA6153] gi|254756312|ref|ZP_05208341.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Vollum] gi|254758390|ref|ZP_05210417.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Australia 94] gi|300119599|ref|ZP_07057143.1| cysteinyl-tRNA synthetase [Bacillus cereus SJ1] gi|33301677|sp|Q81VV1|SYC_BACAN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216160|sp|Q63HB0|SYC_BACCZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216199|sp|Q6HPS8|SYC_BACHK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735045|sp|B7JK97|SYC_BACC0 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765175|sp|C3P9N5|SYC_BACAA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765176|sp|C3LJ62|SYC_BACAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|30253601|gb|AAP24143.1| cysteine--tRNA ligase [Bacillus anthracis str. Ames] gi|47500492|gb|AAT29168.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177050|gb|AAT52426.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|49333247|gb|AAT63893.1| cysteine--tRNA ligase (cysteinyl-tRNA synthetase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978596|gb|AAU20146.1| cysteine--tRNA ligase (cysteinyl-tRNA synthetase) [Bacillus cereus E33L] gi|164711121|gb|EDR16682.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167510080|gb|EDR85491.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|167529563|gb|EDR92313.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|170127561|gb|EDS96435.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|170666485|gb|EDT17262.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|172080057|gb|EDT65155.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|196027417|gb|EDX66034.1| cysteine--tRNA ligase [Bacillus cereus NVH0597-99] gi|218537598|gb|ACK89996.1| cysteinyl-tRNA synthetase [Bacillus cereus AH820] gi|227004950|gb|ACP14693.1| cysteine--tRNA ligase [Bacillus anthracis str. CDC 684] gi|229266355|gb|ACQ47992.1| cysteine--tRNA ligase [Bacillus anthracis str. A0248] gi|298723071|gb|EFI63969.1| cysteinyl-tRNA synthetase [Bacillus cereus SJ1] Length = 465 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|323703779|ref|ZP_08115417.1| cysteinyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] gi|323531248|gb|EGB21149.1| cysteinyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] Length = 493 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 190/512 (37%), Positives = 260/512 (50%), Gaps = 77/512 (15%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 KK ++IYNTL + EF D ++ MYVCGPT Y+F H+GNARP++ FD + R Y Sbjct: 5 KKVMEIYNTLTKTKEEFIPRDKGHVSMYVCGPTTYNFIHLGNARPLVFFDTVRRYF-LYK 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G K V YV+N TD+DDKII RA++E P+ + +K ++ D L L Sbjct: 64 GFK-VKYVQNFTDVDDKIINRAKEEGMD-PL-----ALANKYINEYFVDADALNVLRADV 116 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+ + HI ++I LI+ + GHAY + ++ F S P YG S R +++ + G RV Sbjct: 117 HPKVSEHIKEIIDLIKLLEQRGHAYAVDGDVYFAVRSFPEYGKLSGRNLEDMQAGARVEV 176 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KK+P DF LWK + P EP WESPWG GRPGWHIECSAM+ YLG FDIHGGG DLI Sbjct: 177 DVRKKDPMDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMAQKYLGYSFDIHGGGFDLI 236 Query: 242 FPHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS C + A W+HNGF+ + KMSKS GNF + E+L+ Sbjct: 237 FPHHENEIAQSEASCG---KPFARYWMHNGFITINQEKMSKSLGNFFLVREILD------ 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------STSKGII 347 +P V+R +L THYR P+DF ++L A L + S K + Sbjct: 288 -KFPPDVVRWFLLSTHYRSPLDFDDEKLQVAGRGLERIKTAVRLLYEALDRPDSAGKEAL 346 Query: 348 DPAVL------------SALYNDLNTVSAIQALHKLARE-------------------ST 376 D A A+ +D NT AI +L++E Sbjct: 347 DAARFKGKLAALRSEFEQAMDDDFNTALAISVFFELSKEINILVGNLGGVVTPAARQLLA 406 Query: 377 KNHDLLPIFNASAHILGIEVCKEHL--------NKNISIAIEKLVQERLILLKMKKFSSA 428 H L+ FN IL + L +K + ++ +++ R K +++A Sbjct: 407 DAHALVKDFNYVLGILKEDQTSGRLLLEAPAKDDKLVDALVQLIIKIRQEARGKKDWATA 466 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 D IR L+ G ILED P RWK++ Sbjct: 467 DAIRDGLKELGIILED--TPQG----VRWKKQ 492 >gi|260853742|ref|YP_003227633.1| cysteinyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|260866682|ref|YP_003233084.1| cysteinyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|257752391|dbj|BAI23893.1| cysteinyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|257763038|dbj|BAI34533.1| cysteinyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|323153431|gb|EFZ39686.1| cysteinyl-tRNA synthetase [Escherichia coli EPECa14] gi|323178201|gb|EFZ63779.1| cysteinyl-tRNA synthetase [Escherichia coli 1180] Length = 461 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYIALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|315652374|ref|ZP_07905363.1| cysteine--tRNA ligase [Eubacterium saburreum DSM 3986] gi|315485348|gb|EFU75741.1| cysteine--tRNA ligase [Eubacterium saburreum DSM 3986] Length = 469 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 193/479 (40%), Positives = 255/479 (53%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I+ +RMYVCGPTVY+ HIGNARPMI FD + R Y E Sbjct: 1 MKIFNTLSRRKEEFVPIEEGKVRMYVCGPTVYNLIHIGNARPMIFFDTVRRYFEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E DA ++I+ + + KD + L T P Sbjct: 60 -VNYVSNFTDVDDKIINKAIEEGV-----DA-AVISQRYINECKKDMAAMNVLPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M +I +I GHAY A + + F S +YG S + IDE + G R V Sbjct: 113 ATQEIEGMEDMIGKLIKSGHAYVAKDGTVYFRVKSFKDYGKLSHKNIDELQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ DF+LWK EP WESPW +GRPGWHIECS MS YLG+ DIHGGG DL Sbjct: 173 GEDGKEDSNDFVLWKPKKEGEPYWESPWSKGRPGWHIECSVMSKKYLGEQIDIHGGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + AN W+HN FLN++ +KMSKS GNF T+ ++ E Sbjct: 233 IFPHHENEIAQSESASG-KSFANYWMHNAFLNIDNKKMSKSAGNFFTVRDISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTST-----SKGIIDPAV 351 + V+R ML HYR P++F+ + + A E +L+ T + I A Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAELMEAAKNSLERILTGMDNIKTVIARNNTAPITDAE 344 Query: 352 LS--------------ALYNDLNTVSAIQALHKLARES--TKNHD--------LLPIFNA 387 LS A+ +D NT A+ A+ +L + S T N + LL + Sbjct: 345 LSNLEIAKVLKDKFADAMDDDFNTADAVSAIFELVKLSNTTLNENSTVEYAKGLLNVIEP 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI E + + IE L+ R K K F+ AD IR L KG +LED + Sbjct: 405 LCDVLGI--ITERKTEILDSEIEDLIARRTQARKNKDFALADKIRNDLLEKGIVLEDTR 461 >gi|240103606|ref|YP_002959915.1| cysteinyl-tRNA synthetase [Thermococcus gammatolerans EJ3] gi|259511844|sp|C5A739|SYC_THEGJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239911160|gb|ACS34051.1| Cysteinyl-tRNA synthetase (cysS) [Thermococcus gammatolerans EJ3] Length = 476 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 189/480 (39%), Positives = 258/480 (53%), Gaps = 58/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 IRIYNTLTRQKEEFKPLHEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEH--KGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA + + + K + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIKRANE------TGEDPKELAEKFLRIFLEDMKALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +I I+ + G+AYE ++ + F+ +YG S+ K+++ G RV Sbjct: 115 VTEHMQDIISFIKKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK++ P EP WESPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KRNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C + + W+H GFL + G KMSKS GNF+T+ ELL + + Sbjct: 235 HENEIAQSEACFGH--EWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELL-------KRYN 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRL-----------TEAEILLSKW--PQT 340 VIRL +L HYR P+D++ ++RL ++AEI +W P+ Sbjct: 286 PEVIRLFVLQRHYRSPLDYSEEGIEHAKNNLERLYNTLENIRVAMSKAEISF-RWDEPEF 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDL---LPIFN 386 + I D A+ +D NT A++A+ +++ E K L F Sbjct: 345 RAYEAIRDARKKFYEAMDDDFNTAEALKAVFEVSNAINRYLTEVEKPKESILRKAWEFFK 404 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + G+ + KE +N I LV+ R L K KKF AD IR++L G LED Sbjct: 405 DVGEVFGLFEDYFKEQKAENDEELINLLVEVRAQLRKEKKFDLADKIREELRKLGIQLED 464 >gi|315659130|ref|ZP_07911995.1| cysteine--tRNA ligase [Staphylococcus lugdunensis M23590] gi|315495854|gb|EFU84184.1| cysteine--tRNA ligase [Staphylococcus lugdunensis M23590] Length = 466 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 260/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y + Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I + Q F +D L T PR Sbjct: 61 -VDYVSNFTDVDDKLIKRSQE------LNESVPEIADRYIQAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+N++ G+AYE++ ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMDHMEDIIEFIKNLVDEGYAYESHGDVYFRTRKFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWSSPFGEGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA------ 350 V+R M+ HYR PI++ ++ ++ A+ L + + + + I++ Sbjct: 286 DVLRFFMISVHYRSPINYNMELVSAAKSGLERIRNSYQLIEERETIATNIVEQTDYIEQI 345 Query: 351 ------VLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + +D NT +A+ A + LA+ + K ++ + +LG Sbjct: 346 DEILKQFEQVMNDDFNTANAVTAWYDLAKLANKYVLEKSTSTAVIERFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IE+++ ER K K F+ AD IR L+++ ILED Sbjct: 406 VPLKGQEADVLLDEEIEQMIAERDEARKNKDFARADEIRDTLKAQHIILED 456 >gi|315127193|ref|YP_004069196.1| cysteinyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] gi|315015707|gb|ADT69045.1| cysteinyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] Length = 459 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 175/467 (37%), Positives = 261/467 (55%), Gaps = 46/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ + Sbjct: 2 VQIYNTLTRQKEEFKPMVDGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + +AI+ +T + T+ +D L L P +P Sbjct: 61 -LKYVRNITDVDDKIIKRANEN------GEAINDLTVRMTKAMHEDFDSLNMLRPDIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +++ +I GHAY A+ +++FD S+ YG+ S++ + + G+RV Sbjct: 114 VTGHMDEIIAMVERLIAKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECSAMSS +LG+ FDIHGGG DL FP Sbjct: 174 DKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ + N WIH G + + KMSKS NF T+ E+L + + Sbjct: 234 HHENEIAQSCCANN-GQYVNTWIHTGMVQVNKEKMSKSLDNFFTVREVL-------KQYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 A +R ++ HYR ++++ + L +A S + T+ ++P Sbjct: 286 AESVRYFLISGHYRSQLNYSQENLDQAR---SSLERIYTALRGVEPVECELEGNEYVAKF 342 Query: 354 --ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 A+ +D N+ A+ + ++A+E S K L I + ILGI Sbjct: 343 RKAMNDDFNSPEALPVVFEVAKELNRVKDSDSEKAGHLAFILRSLGEILGIAQQAPEAFL 402 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N + IE L+ +R K +++AD R L + G +LED Sbjct: 403 QGGQNDDEVAEIEALIVKRNDARASKNWAAADEARDALNALGVVLED 449 >gi|153830573|ref|ZP_01983240.1| cysteinyl-tRNA synthetase [Vibrio cholerae 623-39] gi|229520308|ref|ZP_04409734.1| cysteinyl-tRNA synthetase [Vibrio cholerae TM 11079-80] gi|229529129|ref|ZP_04418519.1| cysteinyl-tRNA synthetase [Vibrio cholerae 12129(1)] gi|254292163|ref|ZP_04962934.1| cysteinyl-tRNA synthetase [Vibrio cholerae AM-19226] gi|148873935|gb|EDL72070.1| cysteinyl-tRNA synthetase [Vibrio cholerae 623-39] gi|150421926|gb|EDN13902.1| cysteinyl-tRNA synthetase [Vibrio cholerae AM-19226] gi|229332903|gb|EEN98389.1| cysteinyl-tRNA synthetase [Vibrio cholerae 12129(1)] gi|229342674|gb|EEO07666.1| cysteinyl-tRNA synthetase [Vibrio cholerae TM 11079-80] Length = 459 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE T L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|113970833|ref|YP_734626.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-4] gi|123029526|sp|Q0HH98|SYC_SHESM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|113885517|gb|ABI39569.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-4] Length = 461 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 183/480 (38%), Positives = 259/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P + MYVCG TVYD HIG+ R + FD++ R LRY E Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITDIDDKII+RA + + + +T + + KD L + P +PR Sbjct: 63 -VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMIRPDFEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A+ +++F +S P YG S + +++ + G RV Sbjct: 116 ATLHITEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDD 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 176 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 236 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 +R +L HYR I+++ + L +A L + + + PA +A Sbjct: 288 PETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAPAPAEEFVAKFKAA 347 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNAS------AHILGI------EVCKEH 400 + +D NT A L + RE K D+ + A +LG+ K Sbjct: 348 MDDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAVAMKQLADVLGLLHQAPDAFFKGE 407 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R +L G +LED G T W++K Sbjct: 408 GSDDEVAEIEALIVERNRARVEKDWPAADVARNRLNELGVVLED------GPSGTTWRKK 461 >gi|218703810|ref|YP_002411329.1| cysteinyl-tRNA synthetase [Escherichia coli UMN026] gi|293403647|ref|ZP_06647738.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1412] gi|298379257|ref|ZP_06989138.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1302] gi|300897246|ref|ZP_07115688.1| cysteinyl-tRNA synthetase [Escherichia coli MS 198-1] gi|226735058|sp|B7N980|SYC_ECOLU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218430907|emb|CAR11781.1| cysteinyl-tRNA synthetase [Escherichia coli UMN026] gi|291429500|gb|EFF02520.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1412] gi|298280370|gb|EFI21874.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1302] gi|300358974|gb|EFJ74844.1| cysteinyl-tRNA synthetase [Escherichia coli MS 198-1] Length = 461 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGPGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSSVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|283834167|ref|ZP_06353908.1| cysteine--tRNA ligase [Citrobacter youngae ATCC 29220] gi|291070317|gb|EFE08426.1| cysteine--tRNA ligase [Citrobacter youngae ATCC 29220] Length = 461 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHSDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A IR ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMAAANGMASHLRKLSSVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|42779170|ref|NP_976417.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10987] gi|61216251|sp|Q73FB7|SYC_BACC1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|42735085|gb|AAS39025.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 465 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIQAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|293608603|ref|ZP_06690906.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829176|gb|EFF87538.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 473 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 190/477 (39%), Positives = 267/477 (55%), Gaps = 55/477 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWN--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTETLDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----------------STKNHDLLPIFNASAH--- 390 +A+ +D NT A+ L +L +E ST H L I H Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRH-LTNILGLVQHNVD 408 Query: 391 -ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L ++ +E L + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 409 DFLKSDIGQEALTLS-DAEIEDFIQQRVDAKKAKDFAKADGIRQSLLDQGVVLEDTR 464 >gi|156937781|ref|YP_001435577.1| cysteinyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I] gi|187629828|sp|A8AB68|SYC_IGNH4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|156566765|gb|ABU82170.1| cysteinyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I] Length = 464 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 178/473 (37%), Positives = 263/473 (55%), Gaps = 53/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R++ +F+ ++P +RMYVCGPTVYD +HIG+AR + FD++ + LR Sbjct: 2 LKVFNTLTRRLEDFKPLEPPLVRMYVCGPTVYDHSHIGHARTWVAFDIIKKYLRL--KGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+NITDIDDKII RAR+ + + + T ++ + +L PT PR Sbjct: 60 NVIHVQNITDIDDKIINRARE------LGVSWKEVADTYTNEYFELMKKLKVF-PTVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+HI +I +Q+++ G+AY + + FD P YG S I ++KM ++ Sbjct: 113 VTDHIDDIIEFVQDLVDKGYAYVTQSGVYFDVDKYPYYGQLS--GIKDKKMWSQEEFVKD 170 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + P EP W+SPW +GRPGWHIECS MSS YLGK FD+HGG DLIFPH Sbjct: 171 KKNPYDFALWKCAKPGEPWWDSPWCKGRPGWHIECSTMSSKYLGKQFDVHGGARDLIFPH 230 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + W+H+G+L ++G KMSKS GN + + ++L +S+ Sbjct: 231 HENEIAQSEARFGVRPWVKYWLHSGYLTVKGEKMSKSLGNIVPLKDVL-------KSFEP 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLSA 354 V+R + HYR +DF+ +RL EA+ L++ T + KG +D + A Sbjct: 284 EVVRYWLSSAHYRTELDFSWERLEEAKRSLTRMRMTVDELRKIVKKESPKGKLDEWEIKA 343 Query: 355 LY--------------NDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHI 391 +Y ND NT A A+ + R K + +L N + + Sbjct: 344 IYEVSKIRNEFYDAMDNDFNTPEAWAAVREALRLGNKAIEEGSWEVSLAVLEFVNEADKV 403 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 EV +E +++ + I+ LV+ R L +MK++ ADYIR +L+ G L D Sbjct: 404 F--EVFEERVHEGVEPFIDLLVEVRSKLREMKQWELADYIRSKLDELGVKLLD 454 >gi|229523866|ref|ZP_04413271.1| cysteinyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] gi|229337447|gb|EEO02464.1| cysteinyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] Length = 459 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSRYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE T L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRAAKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|114563765|ref|YP_751278.1| cysteinyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] gi|122299286|sp|Q07ZX5|SYC_SHEFN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114335058|gb|ABI72440.1| cysteinyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] Length = 460 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 186/485 (38%), Positives = 260/485 (53%), Gaps = 55/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSISRDKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYIGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRAAEN------NESCESLTERLIAEMHQDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++Q ++ HAY A+N +++F +S P YG S + +D+ + G RV Sbjct: 114 ATLHIEEIIDMVQRLLDRDHAYVASNGDVLFSVASFPEYGQLSGQNLDQLQAGARVEIDN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLDNFFTIRDVL-------KHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R +L HYR ++++ L +A L + + KG+ +D A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARAALERL--YTALKGLDLTVDAAPAEAFVAKFK 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV---------------- 396 SA+ +D NT A L ++ RE + L A A LG+ + Sbjct: 344 SAMDDDFNTPEAYSVLFEMVREINR---LKTTDMAEASALGVSLKQLADVLGLISQTPEA 400 Query: 397 -CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 K + + IE L+ ER K + +AD R +L G LE D G T Sbjct: 401 FFKGEGSDDEVAEIEALIVERNRARTEKDWPAADVARDRLNELGVELE-----DGGPSGT 455 Query: 456 RWKQK 460 W++K Sbjct: 456 TWRKK 460 >gi|172056119|ref|YP_001812579.1| cysteinyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] gi|229558633|sp|B1YGS9|SYC_EXIS2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171988640|gb|ACB59562.1| cysteinyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] Length = 465 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 176/487 (36%), Positives = 264/487 (54%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN++ K F+ ++ ++MYVCGPTVY++ HIGNARP IVFD + R Y + Sbjct: 2 IQLYNSMTGKKEPFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYFTYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A + + + +T + + + DT L P Sbjct: 61 -VKYVSNFTDVDDKIIRTANE------LGEDYHALTKRFIEAYHADTGALNVQKADIHPL 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ ++ G+AY ++ ++ F T S +YG S++ IDE + G R+ Sbjct: 114 VTETMDDIIAFIEVLVKKGNAYASSGDVYFRTRSFKDYGQLSQQSIDELRSGARIEVGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 174 KEDPLDFVLWKAAKPGEPAWTSPWGEGRPGWHIECSAMAKKYLGDTIDIHAGGQDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + +K AN W+HNGFLN+E KMSKS GNF+T++E ++ + Sbjct: 234 HENEIAQSEACNS-QKFANYWMHNGFLNIENEKMSKSLGNFLTVHEAIQ-------AVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------------TSTSKGI-- 346 V+R ML YR PI+++ + +A L++ + T+T K + Sbjct: 286 MVLRFFMLSVQYRHPINYSRDLIDQAANGLARIRESVANVEHRLTMTADLGTATEKWLNR 345 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHIL 392 I ++++ +D NT +A+ L L++E+ L +F + +L Sbjct: 346 IEEIKQHFVTSMDDDFNTANAVTDLFDLSKEANLYLGEDQVAKEVLERFLAVFQELSTVL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + E + +E+L+++R K + F+ AD IR QL +G +LE D Q Sbjct: 406 GVTLTIE--KGLLDEEVEQLIRDRDTARKERDFARADAIRDQLRDQGILLE-----DTAQ 458 Query: 453 RMTRWKQ 459 M RWK+ Sbjct: 459 GM-RWKR 464 >gi|169796523|ref|YP_001714316.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AYE] gi|213156364|ref|YP_002318784.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB0057] gi|215483986|ref|YP_002326211.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB307-0294] gi|301346200|ref|ZP_07226941.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB056] gi|301510179|ref|ZP_07235416.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB058] gi|301594397|ref|ZP_07239405.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB059] gi|332853945|ref|ZP_08435065.1| cysteine--tRNA ligase [Acinetobacter baumannii 6013150] gi|332870201|ref|ZP_08439096.1| cysteine--tRNA ligase [Acinetobacter baumannii 6013113] gi|226735042|sp|B7GWA1|SYC_ACIB3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735043|sp|B7IBU3|SYC_ACIB5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558611|sp|B0VAU1|SYC_ACIBY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169149450|emb|CAM87336.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AYE] gi|213055524|gb|ACJ40426.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB0057] gi|213985743|gb|ACJ56042.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii AB307-0294] gi|332728301|gb|EGJ59682.1| cysteine--tRNA ligase [Acinetobacter baumannii 6013150] gi|332732368|gb|EGJ63625.1| cysteine--tRNA ligase [Acinetobacter baumannii 6013113] Length = 473 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 187/475 (39%), Positives = 271/475 (57%), Gaps = 51/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G R+ + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERIDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTEALDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI------E 395 +A+ +D NT A+ L +L +E + D + ++ +ILG+ + Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRHLTNILGLVQHNVDD 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K + ++ IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQDALALSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTR 464 >gi|297579367|ref|ZP_06941295.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC385] gi|297536961|gb|EFH75794.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC385] Length = 459 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSRYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE T L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|297618406|ref|YP_003703565.1| cysteinyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297146243|gb|ADI03000.1| cysteinyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 539 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 157/396 (39%), Positives = 221/396 (55%), Gaps = 42/396 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ ++P+ ++MYVCGPT Y++ H+GNARP++VFD++ R L+Y E Sbjct: 2 IQVYNTLSRRKERLNTLEPNKVKMYVCGPTTYNYIHLGNARPLVVFDIIRRYLQYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII+R+++E S + + K ++ +D L + PR Sbjct: 61 -VTYVQNFTDVDDKIIQRSQEEGKSA------AEVAGKYIDEYFRDADALGVKRADYHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HIP +I +I+ ++ G+AY ++ + + YG S R ++E G RV Sbjct: 114 VSDHIPDIIRVIETLVEKGYAYRIGGDVYYRVRAFERYGQLSGRSLEEMLAGARVEVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG GRPGWHIECS M+ YLG+ DIHGGG DL+FPH Sbjct: 174 KEDPMDFALWKEAKPGEPAWESPWGPGRPGWHIECSVMAMKYLGETLDIHGGGADLVFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A W+HNGF+ + KMSKS GNF + E+L +PA Sbjct: 234 HENEIAQS-EAYSGRPFVRYWLHNGFITVNKEKMSKSLGNFFILREILS-------QYPA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------------STSK 344 V+R + THYR P+DF +L EA L++ T K Sbjct: 286 EVVRFYLGSTHYRSPLDFDNTKLEEAGRALARLNNTLRRLNEVVKNEEVEANDETRDADK 345 Query: 345 GIID------PAVLSALYNDLNTVSAIQALHKLARE 374 G + A+ +D NT AI L +ARE Sbjct: 346 GFVSRLHELKEKFEVAMDDDFNTAQAIGYLFDMARE 381 >gi|217973913|ref|YP_002358664.1| cysteinyl-tRNA synthetase [Shewanella baltica OS223] gi|254781693|sp|B8E5F2|SYC_SHEB2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|217499048|gb|ACK47241.1| cysteinyl-tRNA synthetase [Shewanella baltica OS223] Length = 459 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 263/483 (54%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ L +A L + T+ +D V Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFVAKF 342 Query: 353 -SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCK 398 +A+ +D NT A L + RE + L A +LG+ E Sbjct: 343 KAAMDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFF 402 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L+ ER K +++AD R +L G LED +P T W Sbjct: 403 QGGGSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED--SPSG----TTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|41203|emb|CAA39691.1| cysteine-tRNA ligase [Escherichia coli K-12] Length = 461 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A + + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAAVERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|110640787|ref|YP_668515.1| cysteinyl-tRNA synthetase [Escherichia coli 536] gi|123344273|sp|Q0TKB5|SYC_ECOL5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110342379|gb|ABG68616.1| cysteinyl-tRNA synthetase [Escherichia coli 536] Length = 461 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 190/483 (39%), Positives = 272/483 (56%), Gaps = 50/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCA-DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQS CA D + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGL--YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLS 353 A +R ++ HYR ++++ + L +A L + + + + PA + Sbjct: 285 DAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIE 344 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKN 404 A+ +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 345 AMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQS 404 Query: 405 ISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + A IE L+Q+RL K K +++AD R +L G +LED G + T W Sbjct: 405 GAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTW 458 Query: 458 KQK 460 ++K Sbjct: 459 RRK 461 >gi|196047745|ref|ZP_03114944.1| cysteinyl-tRNA synthetase [Bacillus cereus 03BB108] gi|225862142|ref|YP_002747520.1| cysteinyl-tRNA synthetase [Bacillus cereus 03BB102] gi|254765177|sp|C1ET19|SYC_BACC3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|196021423|gb|EDX60131.1| cysteinyl-tRNA synthetase [Bacillus cereus 03BB108] gi|225788057|gb|ACO28274.1| cysteine--tRNA ligase [Bacillus cereus 03BB102] Length = 465 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|254302121|ref|ZP_04969479.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322313|gb|EDK87563.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 473 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 183/482 (37%), Positives = 273/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT+++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIENVSIKE------IAERYIKAYFEDTSKINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVKKYRDGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G+KMSKS+G+FI + ++L K F GR Sbjct: 234 PHHENEMAQSKCGCG-GTFARYWMHNGYININGQKMSKSSGSFILLRDIL--KHFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P++F+ L + + L + T Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENTLKRIKELDRENLKGTDDCQDLL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 +K ++ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEVNISEKGLEVINEVYSYLVM 405 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVQLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|206978367|ref|ZP_03239240.1| cysteinyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217957665|ref|YP_002336209.1| cysteinyl-tRNA synthetase [Bacillus cereus AH187] gi|222093860|ref|YP_002527910.1| cysteinyl-tRNA synthetase [Bacillus cereus Q1] gi|226735048|sp|B7HQS4|SYC_BACC7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765178|sp|B9IZH4|SYC_BACCQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206743428|gb|EDZ54862.1| cysteinyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217066370|gb|ACJ80620.1| cysteinyl-tRNA synthetase [Bacillus cereus AH187] gi|221237908|gb|ACM10618.1| cysteinyl-tRNA synthetase [Bacillus cereus Q1] Length = 465 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLRSTNNGLERIKTAYGNLKHRMESSTDLTDHDEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LKKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIQAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|171058353|ref|YP_001790702.1| cysteinyl-tRNA synthetase [Leptothrix cholodnii SP-6] gi|170775798|gb|ACB33937.1| cysteinyl-tRNA synthetase [Leptothrix cholodnii SP-6] Length = 457 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/463 (39%), Positives = 257/463 (55%), Gaps = 39/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+N+L R++ F++I+P ++RMYVCG T+YD HIG+AR M+ FDV+YR LR G + Sbjct: 1 MRIHNSLSRELETFKSIEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVYRWLRAS-GWR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T + +D L PTH+PR Sbjct: 60 -VTYVRNITDIDDKIIRRAVERGITI------RQLTDEMIDAMHRDIGALGIERPTHEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I + G AY + N ++ + YG S + +D+ + G RV Sbjct: 113 ATEYIPQMLSMISTLESKGLAYRSGNGDVNYAVRRFEGYGKLSGKSLDQLRAGERVAVAD 172 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP ++SP+G GRPGWHIECSAMS LG+ FDIHGGGLDL Sbjct: 173 GKEDPLDFVLWKSAKPQEPDDAKYDSPYGPGRPGWHIECSAMSCALLGETFDIHGGGLDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A W+HNGFLN++ KMSKS GNF TI ++L + Sbjct: 233 QFPHHENEIAQSEGA-LGHSWVPTWMHNGFLNVDNEKMSKSLGNFFTIRDVL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVL 352 S+ +R ML YR P +F+ L +A L++ + D PA Sbjct: 285 SYDGETVRFFMLRVQYRSPFNFSDAGLDDARSSLTRLYTALDGVAVDDASEIDWTHPAAA 344 Query: 353 ---SALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGI--EVCKEHLNKNI 405 +A+ +D NT A+ L LA E +N D + +LG+ + + L + Sbjct: 345 RFKAAMDDDFNTPIAVSVLFDLAGEVNRNKDAGTAGLLKRLGAVLGVLQQSPRTFLQGDT 404 Query: 406 S----IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I++ + ER + F+ AD IR L ++G L+D Sbjct: 405 GGLDEAHIQQQIGERQAAKAARNFAEADRIRLALAAQGITLKD 447 >gi|324324079|gb|ADY19339.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 465 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLRSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIQAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|187734096|ref|YP_001879221.1| cysteinyl-tRNA synthetase [Shigella boydii CDC 3083-94] gi|229558790|sp|B2TTB3|SYC_SHIB3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187431088|gb|ACD10362.1| cysteinyl tRNA synthetase [Shigella boydii CDC 3083-94] gi|320174878|gb|EFW49998.1| Cysteinyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112] gi|320186200|gb|EFW60940.1| Cysteinyl-tRNA synthetase [Shigella flexneri CDC 796-83] gi|332098469|gb|EGJ03435.1| cysteinyl-tRNA synthetase [Shigella boydii 3594-74] Length = 461 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L + L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|294781851|ref|ZP_06747183.1| cysteine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] gi|294481662|gb|EFG29431.1| cysteine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] Length = 473 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 273/483 (56%), Gaps = 57/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ I + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPIKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT ++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANAENVSIKE------IAERYIKAYFEDTAQINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT++I MI +I++++ G+AYE+N ++ F+ YG S++ I++ + G R+ Sbjct: 114 KATDNIDGMINIIKSLVDKGYAYESNGDVYFEVKKYKEGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKKDALDFALWKSSKPNEPSWDSPWGKGRPGWHIECSAMSRRYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++N+ G KMSKS+G+FI + ++L K F GR Sbjct: 234 PHHENEMAQSKCACG-GTFARYWMHNGYININGEKMSKSSGSFILLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IRL +L +HYR+P++F+ L + + L + + Sbjct: 289 ---IIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENSLKRIKELNRENLDGTNDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 +K ++ + A+ D NT A+ + +L + K D F+ +A Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHVFELVKSVNKALD-EGNFSKTAIEVLDEVYSYLV 404 Query: 390 ----HILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 405 MIIEEVLGVKLKLEAEVNNISADLIELILELRKDAREQKNWALSDKIRDRLLELGIKIKD 464 Query: 445 YKN 447 K+ Sbjct: 465 GKD 467 >gi|134094511|ref|YP_001099586.1| cysteinyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|166200149|sp|A4G4M2|SYC_HERAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|133738414|emb|CAL61459.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Herminiimonas arsenicoxydans] Length = 462 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 194/486 (39%), Positives = 264/486 (54%), Gaps = 59/486 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F IDP +RMYVCG TVYD+ HIG+AR M+VFD++ R LR + Sbjct: 4 LKIYNTLAREKQLFTPIDPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASGFD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + IS +T + +D L P H+PR Sbjct: 63 -VTYVRNITDIDDKIIKRAAEN------GETISQLTQRFIDAMDEDAAALGVQKPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN++PQM+ LI + +G AY+A + ++ + YG S + +D+ + G RV Sbjct: 116 ATNYVPQMLGLIDMLERNGLAYKAADGDVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK S EP W S WG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 176 GKHDPLDFVLWKSSKENEPEEVKWSSKWGSGRPGWHIECSAMACELLGEQFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 236 QFPHHENEIAQSEGASG-HTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLE------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------PQTSTSKGIID 348 + A V+R +L HYR ++++ L +A L++ P T + Sbjct: 288 KFDAEVVRFFILRAHYRSQLNYSDAHLDDARNALTRMYTALKDVAPDHLPLDMTEAHAV- 346 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN----ASAHILGI--EVCKEHLN 402 + A+ +D NT AI L +LA E N + P+ A I+G+ ++ L+ Sbjct: 347 -RFIDAMNDDFNTPLAIAVLFELANEI--NREKSPVLARQLIGLAGIVGLLQRPAQQFLH 403 Query: 403 KNISIAIEKLVQERLILLKM---------KKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 ++ A E E LI+ ++ K F+ AD IR L KG ILED Sbjct: 404 AGLAGADE---METLIIGQIAARADAKKAKNFAEADRIRAALLEKGIILEDKPGG----- 455 Query: 454 MTRWKQ 459 +T W++ Sbjct: 456 LTEWRR 461 >gi|308050311|ref|YP_003913877.1| cysteinyl-tRNA synthetase [Ferrimonas balearica DSM 9799] gi|307632501|gb|ADN76803.1| cysteinyl-tRNA synthetase [Ferrimonas balearica DSM 9799] Length = 460 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 178/483 (36%), Positives = 265/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ F+ I P + MYVCG T+YD+ HIG+AR + FD + R LR + Sbjct: 2 LQIFNTLTRQKEAFKPIQPGKVGMYVCGVTIYDYCHIGHARTYVAFDTMVRYLRSQGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII RA + N++ + ++ T+ +D L L P +P Sbjct: 61 -VTYVRNITDVDDKIIRRAAEN------NESCEALVARFTEAMYQDFDALNLLRPDIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +IQ ++ GHAY + ++ F+ + +YG SR+ +++ + G RV Sbjct: 114 VTGHMAEIIDIIQTLVNKGHAYVTDAGDVWFEVKTFDDYGKLSRQDLEQLQSGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK + P EP W SPWG GRPGWHIECSAM+ +LGKVFDIHGGG DL+FP Sbjct: 174 SKRNPMDFALWKSAKPGEPSWTSPWGEGRPGWHIECSAMNGKHLGKVFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H+G + + KMSKS NF TI E+L + + Sbjct: 234 HHENEVAQSCCAHDT-NYVNYWVHSGMVQVNKEKMSKSLNNFFTIREVL-------KQYQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L +HYR ++++ + L +A L + + +G+ L Sbjct: 286 AESVRYFLLSSHYRSQLNYSEENLNQAHAALERL--YTALRGVTPATELNLDNDHVARFQ 343 Query: 353 SALYNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGI-----EVCK 398 +A+ +D NT A+ L LAR ES + L + ++G+ E Sbjct: 344 AAMNDDFNTAEALPVLFDLARELNITKEDGESEQAAQLAGLMRYLGGVMGLLEQAPEAFL 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L++ R K +++AD R +L + G +LED G T W Sbjct: 404 QGGGDDDEVAKIEGLIKARNDARASKDWAAADAARDELTAMGIVLED------GAGGTSW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|308275277|emb|CBX31873.1| Cysteinyl-tRNA synthetase [uncultured Desulfobacterium sp.] Length = 413 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/333 (48%), Positives = 208/333 (62%), Gaps = 18/333 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ERK F+ + P + MYVCGPTVYD HIG+AR +IVFDV+ + L E Sbjct: 3 LRIYNTIERKKVPFEPVQPGKVSMYVCGPTVYDSCHIGHARSVIVFDVILKYLNATGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA Q + + + ++F +D L T +P+ Sbjct: 62 -VTYVRNFTDVDDKIINRAVQ------LGIESHEVAERYIKEFYEDMDALNIKRATIEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I LI+ ++ AY + +I + +YG S RK+++ + G RV Sbjct: 115 ATEHIDKIIALIEILLKKEIAYRIDGDIYYSVDKFKDYGKLSGRKLEDMEAGARVEIDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK P EP WESPWGRGRPGWHIECSAMSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KNNPFDFALWKSQKPGEPYWESPWGRGRPGWHIECSAMSSAYLGETFDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS A EK A W+HNGF+N+ KMSKS GNF+ I ++L +S+ Sbjct: 235 HENEIAQSEGA--FEKPFAKYWVHNGFVNINHEKMSKSLGNFLLIKDIL-------KSYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 +RL +L HYR PIDFT + + E+E L K Sbjct: 286 PDSVRLFLLSNHYRSPIDFTDKAMEESEAALDK 318 >gi|19704900|ref|NP_602395.1| cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22257049|sp|Q8RIK9|SYC_FUSNN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|19712793|gb|AAL93694.1| Cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 473 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 270/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 V YV+N TD+DDK+I +A E+ SI I + + + +DT+++ +P Sbjct: 61 -VNYVQNFTDVDDKMINKANIENVSIKE------IAERYIKAYFEDTSKINLKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +IQ+++ G+AYE+N ++ F+ + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIQSLVDKGYAYESNGDVYFEVKKYRDGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENEMAQSKCGCG-GTFAKYWMHNGYININGEKMSKSSGSFVLLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID----- 348 VIRL +L +HYR+P++F+ L + + L + T KGI D Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 + A+ D NT A+ + +L + K D I Sbjct: 346 ATKKEMEAKFIEAMNEDFNTAQALGHIFELVKAVNKTLDEANISKKGLEVIDEVYSYLVM 405 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVQLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|170727456|ref|YP_001761482.1| cysteinyl-tRNA synthetase [Shewanella woodyi ATCC 51908] gi|229558789|sp|B1KLU0|SYC_SHEWM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169812803|gb|ACA87387.1| cysteinyl-tRNA synthetase [Shewanella woodyi ATCC 51908] Length = 459 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVAFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RNITD+DDKII+RA + S +T + + KD L P +PR Sbjct: 61 -VNFLRNITDVDDKIIKRAAENKESC------DSLTERLIGEMHKDFDSLNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ ++I +++ +I HAY +N +++F SS P YG S + +++ + G RV + Sbjct: 114 ATLHMAEIIEMVEKLIEKEHAYVSSNGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 SKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHNT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAVLS--------A 354 A IR +L HYR ++++ L +A+ L++ + ++PA A Sbjct: 286 AATIRYFLLSGHYRSQLNYSEDNLKQAKSALARLYTALKDLDLTVEPAAAENFVSKFKQA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGI------EVCKEH 400 + +D NT A L + RE K DL A +LGI K Sbjct: 346 MDDDFNTPEAYSVLFDMVREVNRLKVTDLAQASALAVRLKELAGVLGILEQDVDSFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N +E L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 SNDAEVAEVEALIAERNRARAEKDWPAADIARDGLNALGVILED------GPEGTTWRKK 459 >gi|326937883|gb|AEA13779.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis CT-43] Length = 465 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 259/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKDAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYNP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIID-------- 348 +IR ML HYR PI+F+ + L L + + +S + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAE 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|227510715|ref|ZP_03940764.1| cysteinyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189836|gb|EEI69903.1| cysteinyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 468 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 183/476 (38%), Positives = 257/476 (53%), Gaps = 55/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK +F+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y G K Sbjct: 2 LQIFNTLTRKKEKFEPVTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+ H ++ I K F++DT L PR Sbjct: 61 -VNYVSNFTDVDDKMINAARENHTTV------GAIAEKYINAFMQDTAALNISKDVTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT +IP++I ++N+ G+AY + + F P YG +D+ ++G Sbjct: 114 ATQNIPEIIAFVKNLEDQGYAYNVDGNVYFRARKFPTYGELPHINVDQLEVGASQHVEKG 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK+S E W+SPWG+GRPGWHIECS MS YLGK DIHGGG DL Sbjct: 174 EFEQKEDPIDFALWKKSKGDEISWDSPWGKGRPGWHIECSVMSMKYLGKTLDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 IFPHHENE AQS A+ + W+HNGF+ + + KMSKS GNFIT+++LL KK Sbjct: 234 IFPHHENERAQS-EAETHQTFVKYWMHNGFVTIGEDNEKMSKSLGNFITVHDLL--KKID 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 G+ VIRL M THYR PI ++ + EA+ L K P+ Sbjct: 291 GQ-----VIRLLMSTTHYRRPIQYSDASVQEAKSNLKKLQTAFNNSTYRLHNAEAGSDPK 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS----------- 388 T I + A+ +D N + I A+++LA+ + + +F S Sbjct: 346 TEQEVRQIVADFIDAMDDDFNVQNGIAAVYELAKFANMYSERDVVFQNSLQFIINTLKQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + GI++ + L + I L+ ER K F +D IR++L+++G +LED Sbjct: 406 AAVFGIKLEQSELKDD---EIWALIHERQQARANKDFIRSDEIREELKARGIVLED 458 >gi|167624689|ref|YP_001674983.1| cysteinyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] gi|189082075|sp|B0TLV2|SYC_SHEHH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167354711|gb|ABZ77324.1| cysteinyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] Length = 459 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/483 (37%), Positives = 260/483 (53%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ +F + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + KD L P ++PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCDSLTERLIAEMHKDFDSLNMARPDNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I HAY A++ +++F SS P YG S + +++ + G RV + Sbjct: 114 ATQHIPEIIDMVERLIERDHAYVASSGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------ 351 A +R +L HYR ++++ L +A+ L + T+ +D +V Sbjct: 286 AATVRYFLLSGHYRSQLNYSEDNLKQAKAALER---IYTALKDLDLSVEAAPAQEFVAKF 342 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 +A+ +D NT A L + RE K L A +LGI Sbjct: 343 KTAMDDDFNTPEAYSVLFDMVREINRLKATDMAKASALGVALKELADVLGILGQDVDTFF 402 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 K + + IE L+ ER K + +AD R L + G ILED G T W Sbjct: 403 KGEGSDDEVAEIEALIVERNRARAEKDWPAADVARDGLNALGVILED------GPEGTTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|168798100|ref|ZP_02823107.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC508] gi|189379362|gb|EDU97778.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC508] Length = 461 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKHARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKVEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|163801179|ref|ZP_02195079.1| cysteinyl-tRNA synthetase [Vibrio sp. AND4] gi|159175528|gb|EDP60325.1| cysteinyl-tRNA synthetase [Vibrio sp. AND4] Length = 460 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 182/483 (37%), Positives = 262/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTDRLIGEMHVDFDSLNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVRQFKEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A +R ++ HYR ++++ L +A L + ++ +G+ A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDSNAAPAGGEEYVTRFT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTENVEKASELGALMRELADVIGILHQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GDAGDDEEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GSEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|300996966|ref|ZP_07181604.1| cysteinyl-tRNA synthetase [Escherichia coli MS 200-1] gi|300304371|gb|EFJ58891.1| cysteinyl-tRNA synthetase [Escherichia coli MS 200-1] Length = 461 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 271/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDID+KII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDEKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|160897948|ref|YP_001563530.1| cysteinyl-tRNA synthetase [Delftia acidovorans SPH-1] gi|229558629|sp|A9BZ45|SYC_DELAS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160363532|gb|ABX35145.1| cysteinyl-tRNA synthetase [Delftia acidovorans SPH-1] Length = 461 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 168/409 (41%), Positives = 237/409 (57%), Gaps = 38/409 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + F I+P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR G + Sbjct: 3 LRIYNTLSRALEAFSPIEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRAS-GHR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I +T + +D L PTH+PR Sbjct: 62 -VTYVRNITDIDDKIIRRA------VENGETIRSLTDRMIDALHQDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+ + ++ F P YG S + +DE + G RV + Sbjct: 115 ATEYVPQMLSMIGRLQDKGLAYQGTDGDVNFAVRKFPGYGKLSGKSLDELQAGERVAVQD 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKQDPLDFVLWKSAKPAEPEEVKWASPWGVGRPGWHIECSAMGCEMLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + + +W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPFSQVWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYN--- 357 + A +R ++ +HYR P++++ L +A L + T+ ++ PA ++ +N Sbjct: 287 EYDAETVRFFVVRSHYRSPLNYSDVHLNDARGALKR---LYTALSLVAPAEVAVDWNHPA 343 Query: 358 ----------DLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI 394 D T A+ L +LA E +K+ + + A A LG+ Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSAETAGLLKALAGCLGL 392 >gi|327484400|gb|AEA78807.1| Cysteinyl-tRNA synthetase [Vibrio cholerae LMA3894-4] Length = 459 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 60 NLTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE T L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|113867241|ref|YP_725730.1| cysteinyl-tRNA synthetase [Ralstonia eutropha H16] gi|123134207|sp|Q0KCA9|SYC_RALEH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|113526017|emb|CAJ92362.1| Cysteinyl-tRNA synthetase [Ralstonia eutropha H16] Length = 462 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 184/464 (39%), Positives = 253/464 (54%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR E Sbjct: 4 LNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+NITDIDDKII RA + + I +T++ Q +D L + P H+PR Sbjct: 63 -VTYVQNITDIDDKIIRRAAEN------GETIGELTTRFIQYMHEDAAALGVIRPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ +I + G AY+A++ ++ + YG S + +++ + G RV Sbjct: 116 ATDYVPQMLDMIGKLEAKGLAYQASDGDVNYSVRKFAGYGKLSGKSLEDLRAGERVSAND 175 Query: 184 HKKNPADFILWKR---STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S P E W+S WG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKSAKASEPPESKWDSKWGAGRPGWHIECSAMSCTLLGEHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI E+L + Sbjct: 236 QFPHHENEIAQSEGASG-KPFVNMWMHNGFVRINDEKMSKSLGNFFTIREVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 S+ A V+R +L HYR P++++ L +A L++ AV Sbjct: 288 SYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKDSQPGGCAVDWDEPHARR 347 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIEVCKEHL------- 401 A+ +D NT A+ L LA E + A LG+ H Sbjct: 348 FAEAMGDDFNTPIAMSVLFDLASEINRTGSTAAARQLKGLAGTLGLLERDPHTFLQGGRS 407 Query: 402 NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IS IE L+ R + F+ AD IR QL G +LED Sbjct: 408 DDGISPEQIETLIAARKTAKVERNFAEADRIRAQLLEAGIVLED 451 >gi|301168673|emb|CBW28264.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 10810] Length = 459 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 183/482 (37%), Positives = 267/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +P Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWSSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVAFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE + K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNKARAAKDWAAADAARNELTAMGIVLED------GPNGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|296327724|ref|ZP_06870264.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155162|gb|EFG95939.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 473 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 270/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 V YV+N TD+DDK+I +A E+ SI I + + + +DT+++ +P Sbjct: 61 -VNYVQNFTDVDDKMINKANIENVSIKE------IAERYIKAYFEDTSKINLKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +IQ+++ G+AYE+N ++ F+ + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIQSLVDKGYAYESNGDVYFEVKKYRDGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENEMAQSKCGCG-GTFARYWMHNGYININGEKMSKSSGSFVLLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID----- 348 VIRL +L +HYR+P++F+ L + + L + T KGI D Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 + A+ D NT A+ + +L + K D I Sbjct: 346 ATKKEMEAKFIEAMNEDFNTAQALGHIFELVKAVNKTLDEANISKKGLEVIDEVYSYLVM 405 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVQLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|262067257|ref|ZP_06026869.1| cysteine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] gi|291379031|gb|EFE86549.1| cysteine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] Length = 473 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 272/482 (56%), Gaps = 55/482 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ I + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPIKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT ++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANAENVSIKE------IAERYIKAYFEDTAQINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT++I MI +I++++ G+AYE+N ++ F+ YG S++ I++ + G R+ Sbjct: 114 KATDNIDGMINIIKSLVDKGYAYESNGDVYFEVKKYREGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKSSKPNEPSWDSPWGKGRPGWHIECSAMSRRYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENEMAQSKCGCG-GTFARYWMHNGYININGEKMSKSSGSFVLLRDIL--KYFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P++F+ L + + L + + Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENSLKRIKELNRENLDGTNDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNAS------ 388 +K ++ + A+ D NT A+ + +L + K D + +F+ Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHVFELVKSVNKALDEGNFSKTAIEVFDEVYSYLVM 405 Query: 389 --AHILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 406 IIEEVLGVKLKLEAEVNNISADLIELILELRKDAREQKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KN 447 K+ Sbjct: 466 KD 467 >gi|327438250|dbj|BAK14615.1| cysteinyl-tRNA synthetase [Solibacillus silvestris StLB046] Length = 467 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 180/489 (36%), Positives = 263/489 (53%), Gaps = 60/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R L+Y E Sbjct: 3 IQIFNSLTRQKEPFIPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYLQYAGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII+ A + + + S++T + + +D T L C PR Sbjct: 62 -VKFVSNFTDVDDKIIKAANE------LGEETSVLTDRFIAAYFEDITALGCQKADAHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +I I+ +I G+AYE+ ++ + T YG S + ID+ K+G R+ Sbjct: 115 VTEHMDDIIEFIKVLIDKGYAYESQGDVYYRTRKFNGYGKLSHQSIDDLKVGARIEAGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W SPWG GRPGWHIECS M+ +LG DIH GG DL FPH Sbjct: 175 KEDPLDFALWKAAKAGEIKWASPWGEGRPGWHIECSVMAREHLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS + +KT A W+HNG++N++ KMSKS GNFI +N++ R Sbjct: 235 HENEIAQSEAHN--DKTFARYWMHNGYINIDNEKMSKSLGNFILVNDI--------RQQI 284 Query: 304 AP-VIRLAMLMTHYREPIDFT---------------------VQRLTEAEILLSKWPQTS 341 P V+R ML HYR PI+F RLT + L Q Sbjct: 285 DPQVLRFFMLSVHYRNPINFAQDLVEAAKNGLDRIRTSYTNVAHRLTSSASLGDNSEQWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLA-------RESTKNHD----LLPIFNASAH 390 G I +A+ +D NT +A+ AL +L+ E+ + + +L +F+ + Sbjct: 345 EKIGQIKVDFENAMNDDFNTANAVSALFELSHIANVYLNEANTDKEVLQAILTMFDTIGN 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI + E + IE L++ER K + F+ +D IR QL +LED + Sbjct: 405 VLGIHIKVEA--GLLDEEIEALIEERNQARKNRDFARSDEIRDQLLGMDIVLEDTR---- 458 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 459 --QGTRWKR 465 >gi|119897351|ref|YP_932564.1| cysteinyl-tRNA synthetase [Azoarcus sp. BH72] gi|119669764|emb|CAL93677.1| CysS protein [Azoarcus sp. BH72] Length = 460 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 172/403 (42%), Positives = 231/403 (57%), Gaps = 32/403 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL R F+ I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LSIHNTLSRSKEVFRPIEPGKVRMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ ++I +T + +D L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAQEN------GESIRALTDRFIAAMHEDADALGVLRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++ M LI+ + G AY AN+++ + YG S + +DE + G RV Sbjct: 114 ATDYVASMQSLIERLHAKGLAYVAANHDVCYAVRKFEGYGKLSGKSLDELRAGERVEVAG 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL Sbjct: 174 EKKDPLDFVLWKHAKAEEPDEAKWASPWGSGRPGWHIECSAMSSDLLGEHFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++LET Sbjct: 234 QFPHHENEIAQSEGA-HGHAFVNYWMHNGFVRVDDEKMSKSLGNFFTIRDVLET------ 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 + A V+R +L HYR P++++ L +A L++ S AV Sbjct: 287 -YDAEVVRFFILRAHYRSPLNYSDAHLDDARQALTRLYTALRSVEAAPAAVDWTESHALR 345 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 +A+ +D NT A+ L +LA E + D P+ A LG Sbjct: 346 FRAAMDDDFNTAEALAVLFELANEVNRGRD--PLLAAQLKALG 386 >gi|168181842|ref|ZP_02616506.1| cysteine--tRNA ligase [Clostridium botulinum Bf] gi|237796964|ref|YP_002864516.1| cysteinyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657] gi|259511826|sp|C3KVS3|SYC_CLOB6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|182674897|gb|EDT86858.1| cysteine--tRNA ligase [Clostridium botulinum Bf] gi|229261308|gb|ACQ52341.1| cysteine--tRNA ligase [Clostridium botulinum Ba4 str. 657] Length = 465 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 262/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLPLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKKANEEGTTV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMKEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPEEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV--- 351 V+R+ ML HYR I+F+++ L + L + + ++G+ D + Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEGLRDEELKYR 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 DELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNITIESSKELVKYALDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ ++ IE+L+QER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQKSTKASLEEEIERLIQERQKARKEKDWALADKIRDDLKERGIVLED--TPQG- 459 Query: 452 QRMTRWKQ 459 RWKQ Sbjct: 460 ---VRWKQ 464 >gi|257784983|ref|YP_003180200.1| cysteinyl-tRNA synthetase [Atopobium parvulum DSM 20469] gi|257473490|gb|ACV51609.1| cysteinyl-tRNA synthetase [Atopobium parvulum DSM 20469] Length = 493 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 187/507 (36%), Positives = 257/507 (50%), Gaps = 76/507 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNT K EF+ ID IRMYVCGPTVYD HIGNAR + FDV+ R L Y E V Sbjct: 3 VYNTQTHKKEEFKPIDEGKIRMYVCGPTVYDQIHIGNARTFLSFDVIRRYLMYKGFE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+ +N+TD+DDKII+RA ++ + ++ + +Q F+K R L P +PRAT Sbjct: 61 TFAQNLTDVDDKIIQRANEQGRTA------QEVSEEFSQAFIKQMHRFNILDPDIRPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + I M+ +IQ++I G+AY + ++ F S +YG S R +D+ + G RV K Sbjct: 115 HEIEAMLQMIQSLIEQGYAYAVPSGDVYFSVRSDHDYGVLSGRDLDQLRAGERVEVNDEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF LWK + P EP W SPWG GRPGWH EC AM YLG DIHGGG DL+FPHH Sbjct: 175 RDPFDFALWKAAKPGEPSWSSPWGEGRPGWHSECCAMIHRYLGTPIDIHGGGSDLVFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENE AQ+ CA AN W+H G L ++G KMSKS GNF T+ E+L+ +PA Sbjct: 235 ENETAQASCAWHA-PLANYWMHTGMLRVDGEKMSKSLGNFYTLKEVLD-------KYPAD 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDPAVLSA 354 +RL ML THYR P+DF+ +RL L + + Q+S + D A Sbjct: 287 AVRLLMLQTHYRAPLDFSFERLEGTVGTLERMKTCVANLRWAYKQSSAQHELSDADRTLA 346 Query: 355 -------------LYNDLNTVSAIQALHKLA-------RESTKNHDLLPIFNASAHI--- 391 + +D NT A+ A+ L E +N P+ AS + Sbjct: 347 EAINIAQSEFDAQMDDDFNTAGALAAIFALVTAANTYLAEVGQNVGASPVLRASDMLCEL 406 Query: 392 ---LGIEVCKEHLNKNI-------------------SIAIEKLVQERLILLKMKKFSSAD 429 LGI++ + ++ A E L+ R K ++ AD Sbjct: 407 TGALGIDLTQAASTSDLPEELVALAAQVAAYEGSSADEAAEVLLAARQEARSQKNWAVAD 466 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTR 456 IR + G ++ED G R+ R Sbjct: 467 QIRDGIAELGLLIEDTA---AGARLKR 490 >gi|28897924|ref|NP_797529.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|260364387|ref|ZP_05777025.1| cysteine--tRNA ligase [Vibrio parahaemolyticus K5030] gi|260877081|ref|ZP_05889436.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|260895742|ref|ZP_05904238.1| cysteine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|31076996|sp|Q87QJ9|SYC_VIBPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28806138|dbj|BAC59413.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|308088338|gb|EFO38033.1| cysteine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|308093754|gb|EFO43449.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|308115166|gb|EFO52706.1| cysteine--tRNA ligase [Vibrio parahaemolyticus K5030] gi|328473118|gb|EGF43966.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus 10329] Length = 460 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGDMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFDEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSTILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA K N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-KYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLNAAPAGGEEYVSRFT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTESVEKASELGALMRELADVIGILYQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GNAGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|251788870|ref|YP_003003591.1| cysteinyl-tRNA synthetase [Dickeya zeae Ech1591] gi|247537491|gb|ACT06112.1| cysteinyl-tRNA synthetase [Dickeya zeae Ech1591] Length = 461 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I +T++ + D L L+P +PR Sbjct: 61 -VKYVRNITDIDDKIIKRATEN------GETIEQLTNRMIGEMHTDFQALNILSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I ++I L++ +I HAY A+N +++F + P YG SR+ +D+ K G RV Sbjct: 114 ATHYIAEIIELVEKLIARRHAYVADNGDVMFSVDTAPGYGVLSRQDLDQLKAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGD-YVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLT-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A IR ++ HYR +++T + L +A L + ++ + A Sbjct: 286 AETIRYFLISGHYRSQLNYTEENLKQARASLERLYTALRGTDASASAAGGEAFERRFRDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L + A +LG+ C L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDAAAANGLAAMLRQLAGVLGLLECDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R + K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVQEIEALIKQRNDARQSKDWALADAARNRLTEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|153839789|ref|ZP_01992456.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] gi|149746697|gb|EDM57685.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] Length = 463 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 5 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + D L P +PR Sbjct: 64 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGDMHADFDALNMKRPDVEPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 117 ATQFISEIIELVEKLIERGFAYVADNGDVMFEVGKFDEYGKLSKQDLDQLQAGARVDIET 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 177 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSTILGDHFDIHGGGSDLQFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA K N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 237 HHENEIAQSCCAHDT-KYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 288 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 289 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLNAAPAGGEEYVSRFT 346 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 347 AAMNDDFNTPEAYSVLFDMAREVNRLKTESVEKASELGALMRELADVIGILYQDPEAFLK 406 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 407 GNAGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTW 460 Query: 458 KQK 460 ++K Sbjct: 461 RRK 463 >gi|309797198|ref|ZP_07691594.1| cysteinyl-tRNA synthetase [Escherichia coli MS 145-7] gi|308119182|gb|EFO56444.1| cysteinyl-tRNA synthetase [Escherichia coli MS 145-7] Length = 461 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 189/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQLRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|331090783|ref|ZP_08339630.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA] gi|330399891|gb|EGG79550.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA] Length = 468 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 259/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF ++ ++MYVCGPTVY+ HIGNARPMIVFD + R Y E Sbjct: 1 MKVYNTLTRRKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + N+ I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEE--GVSANE----ISQRYIAECKKDMEGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I ++I G+AYE N + F T YG S + +D+ + G R V Sbjct: 113 ATEEICGMIEMISDLIDKGYAYEKNGTVYFRTRKFEEYGKLSHKNLDDLQSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWESPWCDGRPGWHIECSVMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWLHNAFLNIDNHKMSKSLGNFRTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDP-------- 349 + V+R ML HYR P++F+ + + E +L+ G++ Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAALMESSANGLERILTAVANLKHLLGVVSEENMTAEER 344 Query: 350 -----------AVLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNAS 388 A A+ +D NT AI ++ L + +S+K + L + Sbjct: 345 EQVKETENFVRAYEEAMEDDFNTADAIASIFDLVKFANTTTSAQSSKEYLQTLYDLIVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + +LG+ V KE + ++ IE L++ER K + F AD IR +L KG ILED + Sbjct: 405 SDVLGLIVEKEE--EMLAEDIEALIEERQAARKERNFQRADEIRDELLKKGIILEDTREG 462 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 463 ------VKWKK 467 >gi|225430454|ref|XP_002285478.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 491 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 188/500 (37%), Positives = 264/500 (52%), Gaps = 75/500 (15%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + R+ F+ + MYVCG T YD +HIG+AR + FDVLYR LR+ E V YVR Sbjct: 1 MSRQKEVFKPKVDGRVGMYVCGVTAYDLSHIGHARVYVSFDVLYRYLRHLEYE--VNYVR 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII RA E PIN ++ + Q+F D T L CL P+ +P ++H+P Sbjct: 59 NFTDVDDKIIARA-NEMGEDPIN-----LSRRYCQEFHVDMTYLHCLPPSVEPCVSDHMP 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 Q+I +I+ II + AY ++ F P YG S RK+++ + G RV KKNPAD Sbjct: 113 QIIDMIKQIIDNDCAYRVEGDVYFSVDKFPEYGRLSGRKVEDNRAGERVAVDSRKKNPAD 172 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK + EP W+SPWG GRPGWHIECSAMS+ YLG FDIHGGG+DL+FPHHENEIA Sbjct: 173 FALWKAAKKGEPFWDSPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIA 232 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 QSC A + + + WIHNGF+ ++ KMSKS GNF TI ++++ + +RL Sbjct: 233 QSCAACK-QSNISYWIHNGFVTIDSEKMSKSLGNFFTIRQVIDI-------YHPLALRLF 284 Query: 311 MLMTHYREPIDFTVQRLTEAEILLSKWPQ------------------------------- 339 ++ THYR PI+++ +L A + Q Sbjct: 285 LIGTHYRSPINYSDVQLESASDRVFYIYQTLHDCQNAMDQDDMTKKDSVPPHILDCINKF 344 Query: 340 -----TSTSKGIIDPAVLSALYNDLNTVS----------------AIQALHKLARESTKN 378 TS S + P VL+AL + L T++ ++ AL K+ R+ Sbjct: 345 YNDFLTSMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKQELRLESLAALEKVIRDVLTI 404 Query: 379 HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 L+P + A +L + +K I + ++ER + K K++ +D IRK L + Sbjct: 405 LGLMPASYSEA-LLQLREKALKRSKLTEDHILQKIEERTMARKNKEYEKSDAIRKDLAAV 463 Query: 439 GFILEDYKNPDNGQRMTRWK 458 G L D +PD T W+ Sbjct: 464 GIALMD--SPDG----TTWR 477 >gi|301059000|ref|ZP_07199966.1| cysteine--tRNA ligase [delta proteobacterium NaphS2] gi|300446881|gb|EFK10680.1| cysteine--tRNA ligase [delta proteobacterium NaphS2] Length = 484 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 188/506 (37%), Positives = 264/506 (52%), Gaps = 79/506 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+ RK F+ ++ + +YVCG TVYD HIG+AR IVFDVL R R + Sbjct: 3 LKLYNSSIRKKEVFKPLNDGKVGLYVCGVTVYDLCHIGHARSTIVFDVLARYFRARGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKIIERA+ + A + + F +D +L L +PR Sbjct: 62 -VTYVRNFTDIDDKIIERAKL------LKKAPKELAREFIDAFYEDMGKLGVLKADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+++ MI + Q ++ G+AY ++ F S P YGS S R +++ + G+RV Sbjct: 115 ATDYVEDMIEMTQTLMDRGYAYTEGGDVYFSVDSYPGYGSLSGRNLEDMRAGSRVAVDDR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG GRPGWH+ECS MS+ +LG FDIHGGG DL+FPH Sbjct: 175 KRHPMDFVLWKSAKPGEPQWPSPWGPGRPGWHLECSVMSNRHLGPTFDIHGGGRDLLFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS CA+ E A W+HNGF+ +E KMSKS GNF+TI + L + + Sbjct: 235 HENERAQSMCANDGE-FARYWVHNGFVTVESEKMSKSLGNFLTIRDAL-------KKYHP 286 Query: 305 PVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTSKGII 347 V+RL +L HYR P+DF+ +QRL + LL TS+ + Sbjct: 287 EVLRLFLLSKHYRSPLDFSAKDVANLQSGLVRIYRMLQRLND---LLGPGDGEKTSEDSL 343 Query: 348 DPA-------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA------------- 387 A + +DLNT A+ + RE + D P N Sbjct: 344 SGASGEFYEKFCEMMDDDLNTAGALGLVFDKVREMNRLMD--PDGNGAVSEKALSSLKSQ 401 Query: 388 ------SAHILGI------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIR 432 + ILG+ E ++ + + + IE LV++R K ++ +D IR Sbjct: 402 RDQLLRAGEILGLFQQNPAEFFEQLASPSKDVNTDEIEALVKKRSQARVAKDWALSDTIR 461 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWK 458 QL+ G +LED G + T W+ Sbjct: 462 DQLKEMGVVLED------GPQGTTWR 481 >gi|306813010|ref|ZP_07447203.1| cysteinyl-tRNA synthetase [Escherichia coli NC101] gi|305853773|gb|EFM54212.1| cysteinyl-tRNA synthetase [Escherichia coli NC101] Length = 461 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRTPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|239825672|ref|YP_002948296.1| cysteinyl-tRNA synthetase [Geobacillus sp. WCH70] gi|259511835|sp|C5D3P6|SYC_GEOSW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239805965|gb|ACS23030.1| cysteinyl-tRNA synthetase [Geobacillus sp. WCH70] Length = 466 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 186/487 (38%), Positives = 264/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + E Sbjct: 4 IRLYNTLTRKKELFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ AR+ +P I + Q + +D T L C PR Sbjct: 63 -VKYVSNFTDVDDKLIKAARELGEDVPT------IAERFIQAYFEDITALGCKKADVHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I IQ +I G+AYE + ++ + T YG S + IDE K G R+ Sbjct: 116 VTENIDTIIEFIQTLIDRGYAYEVDGDVYYRTRKFKEYGKLSHQSIDELKAGARIEVGEK 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 176 KEDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG+LN+ KMSKS GNF+ ++++++ Sbjct: 236 HENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDIIQ-------QIDP 287 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID------ 348 V+R ML HYR PI+++ ++RL + L Q+ST+ D Sbjct: 288 QVLRFFMLSVHYRHPINYSEELLESAKKGLERLKTSYFNLKHRLQSSTNLTDDDDQWLAR 347 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLAREST-----KN------HDLLPIFNASAHIL 392 A + + +D NT + I L +L++++ KN H L F +L Sbjct: 348 IQEQHEAFIREMDDDFNTANGIAVLFELSKQANLYLLEKNTSERVIHAFLREFEQLLDVL 407 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI + + + + IE L+Q+R K + F+ AD IR +L++K ILED P Sbjct: 408 GITLQE---EELLDEEIEALIQKRNEARKNRNFALADQIRDELKAKNIILED--TPQG-- 460 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 461 --TRWKR 465 >gi|229515228|ref|ZP_04404688.1| cysteinyl-tRNA synthetase [Vibrio cholerae TMA 21] gi|229347933|gb|EEO12892.1| cysteinyl-tRNA synthetase [Vibrio cholerae TMA 21] Length = 459 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYIADNGDVMFEVSRYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE T L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDIAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|326795514|ref|YP_004313334.1| cysteinyl-tRNA synthetase [Marinomonas mediterranea MMB-1] gi|326546278|gb|ADZ91498.1| cysteinyl-tRNA synthetase [Marinomonas mediterranea MMB-1] Length = 461 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 192/486 (39%), Positives = 273/486 (56%), Gaps = 56/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + EF+ I I MYVCG TVYDF HIG+AR MI FDV+ R+LR+ + Sbjct: 2 LRIYNTLTGQKEEFKPIVEGKIGMYVCGNTVYDFCHIGHARAMISFDVISRILRHL--DY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA E+ +P S +T + + +D L L P +P+ Sbjct: 60 DLTYVRNITDVDDKIIKRA-AENGELP-----SDLTERMIEAQQEDEKALGNLPPDREPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I +I+ ++ G AY++++ ++ + S +YG + RK++E G RV Sbjct: 114 ATEFMQEIINMIKTLVDKGFAYQSDSGDVFYRASRFTDYGKLNNRKLEEMLAGARVEVTE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK E W+SPWG+GRPGWHIECSAMS++ LG FDIHGGG DL FP Sbjct: 174 SKEHPADFVLWKPVKEGEVHWDSPWGKGRPGWHIECSAMSTNCLGDHFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+H G + + KMSKS GNF TI E+L + + Sbjct: 234 HHENEIAQSEAATG-KDYVNYWMHCGAVRVNNEKMSKSLGNFFTIREVL-------KLYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL------------SKWPQTSTSKGIIDPAV 351 V+R M+ +HYR PID++ Q L +A++ L S+ P++S + Sbjct: 286 PEVLRYLMVSSHYRSPIDYSDQSLNDAKVALERLYNALRDQSCSEIPESSDYR----TRF 341 Query: 352 LSALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNAS----AHILGIEVCK-EHLN 402 +AL +D NT A+ L L R+ T++ +L A A +LG+ ++ Sbjct: 342 TAALNDDFNTPVALSVLFDLVRDLNKAKTESAELAETLAAELTNLASVLGLLYQDADYFL 401 Query: 403 KNISI--------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 KN + IEKL++ER K K FS +D IR L KG L D + Sbjct: 402 KNGTFDAEGISADDIEKLIEERKQARKDKNFSRSDEIRDLLAEKGIELLDSREG------ 455 Query: 455 TRWKQK 460 T W +K Sbjct: 456 TSWTRK 461 >gi|57640379|ref|YP_182857.1| cysteinyl-tRNA synthetase [Thermococcus kodakarensis KOD1] gi|68735029|sp|Q5JD45|SYC_PYRKO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57158703|dbj|BAD84633.1| cysteinyl-tRNA synthetase [Thermococcus kodakarensis KOD1] Length = 476 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 188/479 (39%), Positives = 250/479 (52%), Gaps = 56/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ EF+ + +RMYVCGPTVYD+ HIG+AR I FDV+ R L + Sbjct: 3 IKIYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYTHIGHARTYIAFDVIRRYLEH--KGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA + + + K + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIKRANE------TGEDPKELAEKFLKYFLEDMKALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I I+ + G+AYE ++ + F+ +YG S+ K+++ G RV Sbjct: 115 VTEHIQDIIDFIRKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKVKLEDLVKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP WESPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIFPH Sbjct: 175 KKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQ+ C + W+H GFL + G KMSKS GNF+TI E LE + Sbjct: 235 HENEIAQTEACTGH--EWVRYWMHTGFLMVNGEKMSKSLGNFVTIREALE-------RYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS--------------------KWPQT--S 341 VIRL +L HYR P+D+T + L A+ L KW + Sbjct: 286 PEVIRLFVLQRHYRSPLDYTEEGLEHAKNNLERLYNTLENIRVAMERAEISFKWGEEEFE 345 Query: 342 TSKGIID--PAVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDL---LPIFNA 387 + I D A+ +D NT A++A+ +++ E K L F Sbjct: 346 AYEAIRDGRKKFYDAMDDDFNTAEALKAVFEVSNAINRYLTQVEKPKESILRKAWEFFKM 405 Query: 388 SAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + GI + +E I+ L+ R L K +KF AD IR +L + G LED Sbjct: 406 VSEVFGIFEDYFREQKAGEEEALIKLLIDVRAQLRKERKFDLADKIRDELRNLGIQLED 464 >gi|260902702|ref|ZP_05911097.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AQ4037] gi|308108249|gb|EFO45789.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AQ4037] Length = 460 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGDMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFISEIIELVEKLIERGFAYVADNGDVMFEVGKFDEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSTILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA K N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-KYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLNAAPAGGEEYVSRFT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTESVEKASELGALMRELADVIGILYQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GNAGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|229828827|ref|ZP_04454896.1| hypothetical protein GCWU000342_00910 [Shuttleworthia satelles DSM 14600] gi|229791990|gb|EEP28104.1| hypothetical protein GCWU000342_00910 [Shuttleworthia satelles DSM 14600] Length = 468 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 181/475 (38%), Positives = 267/475 (56%), Gaps = 52/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF I+P ++MYVCGPTVY++ HIGNARPMIVFD R + Y + Sbjct: 1 MRIFNTLTRRKEEFVPIEPGKVKMYVCGPTVYNYIHIGNARPMIVFDTFRRYMEYRGYQ- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII++A++E DA S I+ + + KD L + PR Sbjct: 60 -VTYVSNFTDVDDKIIKKAKEEG-----KDA-SEISERYIAECQKDMEALNVRPASVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +M++++ ++I G+AY + + + T + +YG S + I++ + G R + Sbjct: 113 ATREIGEMVHMVSDLIDKGYAYPVEDGTVYYKTRAFHSYGKLSHKNIEDLEGGHRDIKVT 172 Query: 184 H--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W+SPW +GRPGWHIECS MS YLG DIH GG DLI Sbjct: 173 GELKRDPLDFVLWKPKKEGEPYWDSPWCQGRPGWHIECSCMSKRYLGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ +E A W+HNGFLN++ RKMSKS GNF T+ E+ +K+ G+ Sbjct: 233 FPHHENEIAQSEAANGVE-FARYWMHNGFLNIDHRKMSKSLGNFFTVREV--CQKYSGQ- 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------DP 349 V+R ML HYR P++F+ + A++ L + + + + Sbjct: 289 ----VLRFFMLSAHYRSPLNFSADLMEAAKVSLERILTAGENLRFLAENARIDRMSEEER 344 Query: 350 AVLS-----------ALYNDLNTVSAIQALHKLAR------ESTKNHDLLPIFNASAHIL 392 +L+ A+ +D NT A+ A+ +L + + +L F L Sbjct: 345 KILADSDQYMDKFNGAMDDDCNTADALAAIFELVKFINSRAAGQISRELADQFYQRLDTL 404 Query: 393 GIEVCKEHLNK---NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +VC L++ N+ I+ L++ER + K F+ AD IR L ++G +LED Sbjct: 405 -TQVCGLILDQKEDNLDAEIDSLIEERQEARRQKDFARADRIRDDLLARGIVLED 458 >gi|152969054|ref|YP_001334163.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578467|ref|YP_002239997.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae 342] gi|262041635|ref|ZP_06014829.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936751|ref|YP_003440810.1| cysteinyl-tRNA synthetase [Klebsiella variicola At-22] gi|187629829|sp|A6T5R2|SYC_KLEP7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710845|sp|B5Y0K6|SYC_KLEP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150953903|gb|ABR75933.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567525|gb|ACI09301.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae 342] gi|259041024|gb|EEW42101.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891460|gb|ADC59778.1| cysteinyl-tRNA synthetase [Klebsiella variicola At-22] Length = 461 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 269/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A IR ++ HYR ++++ + L +A L + + + +D A + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGI--EVCKEHLNKN 404 + +D NT A L +ARE K D +AH +LG+ + + L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 405 ISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQVDDAEVAEIESLIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|157369409|ref|YP_001477398.1| cysteinyl-tRNA synthetase [Serratia proteamaculans 568] gi|187631631|sp|A8GAY0|SYC_SERP5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157321173|gb|ABV40270.1| cysteinyl-tRNA synthetase [Serratia proteamaculans 568] Length = 461 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 180/482 (37%), Positives = 254/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII RA + ++ +T++ + D L P +PR Sbjct: 60 SLNYVRNVTDVDDKIIRRATEN------GESCDQLTTRMLAEMHADFDSLLIERPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +++ + Q +I GHAY A+N +++F S P YG SR+ +D+ + G RV Sbjct: 114 ATQHIAEIVEITQRLIDRGHAYVASNGDVMFSIDSDPQYGLLSRQDLDQLQAGARVEIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGAGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCA-HDGPYVNYWMHSGMVMIDKEKMSKSLDNFFTIRDVLGY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARTALERLYTALRGTDVNAQPAGGEVFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A AL LARE T + L A +LG+ + L Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKAEDLTAANGLAAELRKLAKVLGLLQQEPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K ++ AD R +L +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIKQRNDARKAKDWALADAARDRLNEMNIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|184157544|ref|YP_001845883.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii ACICU] gi|332874278|ref|ZP_08442197.1| cysteine--tRNA ligase [Acinetobacter baumannii 6014059] gi|187631665|sp|A3M419|SYC_ACIBT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558609|sp|B2HX34|SYC_ACIBC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|183209138|gb|ACC56536.1| Cysteinyl-tRNA synthetase [Acinetobacter baumannii ACICU] gi|193076930|gb|ABO11663.2| cysteinyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] gi|322507858|gb|ADX03312.1| cysS [Acinetobacter baumannii 1656-2] gi|323517455|gb|ADX91836.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715] gi|332737503|gb|EGJ68411.1| cysteine--tRNA ligase [Acinetobacter baumannii 6014059] Length = 473 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 187/475 (39%), Positives = 271/475 (57%), Gaps = 51/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+++ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLEDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTEALDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI------E 395 +A+ +D NT A+ L +L +E + D + ++ +ILG+ + Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRHLTNILGLVQHNVDD 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K + ++ IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQDALALSDAEIEDFIQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTR 464 >gi|298528309|ref|ZP_07015713.1| cysteinyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298511961|gb|EFI35863.1| cysteinyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 485 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 189/492 (38%), Positives = 263/492 (53%), Gaps = 73/492 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--YYGEK 64 IYNTL R +F ++P +RMYVCG T YD+ HIG+AR +VFDVL R LRY Y+ Sbjct: 3 IYNTLHRAKEKFVPLEPGKVRMYVCGITAYDYCHIGHARSCVVFDVLVRYLRYLGYH--- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V++VRN TD+DDKII+RA +E +D ++ K + F D L L +PR Sbjct: 60 -VSFVRNFTDVDDKIIKRAEEEGLD---SDQVA---EKYIEAFYLDMDELNVLKADVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI + ++++ G AY + +I F +P YG S R I+E + G+R+ Sbjct: 113 ATRHIEEMIQVTKSLLDKGFAYITSGKDIYFRVRRMPRYGQLSGRNIEELQSGSRIAPDE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWH+EC+AMS YLG FDIHGGG DL FP Sbjct: 173 EKEDPLDFALWKTAKPGEPSWDSPWGAGRPGWHLECTAMSEKYLGIPFDIHGGGQDLAFP 232 Query: 244 HHENEIAQSCCA-DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENE AQS A DR + W+HNGF+ ++ KMSKS GNFITI +++ K F G Sbjct: 233 HHENEKAQSEAAFDR--EFVKYWVHNGFVRVDSEKMSKSLGNFITIRDIM--KDFHGE-- 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--WPQTST---------SKGIIDPAV 351 V+R +L HYR P+D++ L E E L + W +T SKG P Sbjct: 287 ---VLRFFLLTKHYRSPLDYSDGSLEETEKALKRVYWAKTGLQKELQKEKWSKGQGFPEA 343 Query: 352 L-----------SALYNDLNTVSAIQALHKLAR--------------ESTKN--HDLLPI 384 A+ +DLNT A+ + L R E+ K +L + Sbjct: 344 SQELQDLASKWDQAMQDDLNTAEAVGYVFGLVRLANRMLEDKTFRKSEAGKEIIQQMLGM 403 Query: 385 FNASAHILGI-EVCKEHLNKNISI-----------AIEKLVQERLILLKMKKFSSADYIR 432 LG+ + E + + + ++++V +R K K F +AD IR Sbjct: 404 LEGWGDALGVFQRSGEEFLEQLKLMRCNRLDIDPQTVQEMVLKRQQARKDKDFETADNIR 463 Query: 433 KQLESKGFILED 444 ++L +KG + D Sbjct: 464 EELTAKGIEVMD 475 >gi|170767865|ref|ZP_02902318.1| cysteinyl tRNA synthetase [Escherichia albertii TW07627] gi|170123353|gb|EDS92284.1| cysteinyl tRNA synthetase [Escherichia albertii TW07627] Length = 461 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVERMIAEMHKDFDALNIQRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLASVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|241662706|ref|YP_002981066.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12D] gi|240864733|gb|ACS62394.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12D] Length = 463 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 184/468 (39%), Positives = 265/468 (56%), Gaps = 43/468 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + +S +T + +D L P ++ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETMSALTGRFIAAMHEDADALGVQRPDYE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLGMIGKLQTNGLAYQATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG+ FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKAEEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS A KT N W+HNGF+ + KMSKS GNF TI ++L+ Sbjct: 234 DLQFPHHENEIAQSEGA--TGKTFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVLKV--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA 350 + A V+R +L +HYR ++++ L +A L++ P + +K + + Sbjct: 289 ----YDAEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAAGAKPDWNES 344 Query: 351 ----VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH--LN 402 L A+ +D NT A+ L +LA E T++ +L A A +LG+ H L Sbjct: 345 HGKRFLEAMNDDFNTPVAVSVLFELASEVNKTRSPELASQLAALAGVLGLLGRDPHAFLQ 404 Query: 403 KNIS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +S +E ++ER + F+ AD IR L + G +LED Sbjct: 405 GGVSPDGLDAAEVEARIEERRAAKAARDFARADAIRADLLAAGIVLED 452 >gi|117927293|ref|YP_871844.1| cysteinyl-tRNA synthetase [Acidothermus cellulolyticus 11B] gi|166200127|sp|A0LQZ8|SYC_ACIC1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|117647756|gb|ABK51858.1| cysteinyl-tRNA synthetase [Acidothermus cellulolyticus 11B] Length = 469 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 252/472 (53%), Gaps = 52/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R + EFQ DP + MYVCG TV HIG+ R +VFDVL R L + + Sbjct: 3 LRLHDTRSRGLREFQPADPPRVTMYVCGATVQAPPHIGHLRSGLVFDVLVRWLAVHGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RN+TDIDDKI+ A E IP + +N + F L C+ PT +P Sbjct: 62 -VVFCRNVTDIDDKILRVAAAE--GIPWWQ----VAYRNYRLFDSAYRLLGCVPPTVEPW 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIPQ+I LI+ +I GHAY A ++ F S P YG S R D + G + H Sbjct: 115 ATGHIPQIIALIRRLIDAGHAYPAGGDVYFAVRSFPAYGGLSGRDPDALQAGES--DGVH 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG GRPGWHIECSAMS+ YLG FDIHGGGLDL+FPH Sbjct: 173 KRDPLDFALWKGAKPGEPSWESPWGPGRPGWHIECSAMSTTYLGSTFDIHGGGLDLLFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS A + A W+HNG + L G KMSKS GN +++++LLE + Sbjct: 233 HENECAQSQAAG--DGFARYWLHNGLVTLRGEKMSKSLGNVLSMDQLLELVR-------- 282 Query: 305 PV-IRLAMLMTHYREPIDFTVQR--------------LTEAEILLSKWPQTSTSKGIID- 348 P+ +R ++ HYR +DF+ + L A+ L+ + P G+ID Sbjct: 283 PIELRYYLIGAHYRSTLDFSEESLEEAAAAYRRIEGFLLRAQELVGELPAADPQTGLIDR 342 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARES---------TKNHDLLPIFNASAHILGIEVC 397 P ++AL +DL A+ +H + R+ T L A ++G+ Sbjct: 343 LPPEFVAALDDDLAVPRALAVMHSVVRQGNAALAETDKTAVRRFLGEVTAMLDVMGLRPP 402 Query: 398 KEH-----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + L + + ++ ER + + F++AD +R +L G ++ED Sbjct: 403 DDGSRLDALRRVVDNLARLVLDEREAARQRRDFATADALRARLTDAGIVVED 454 >gi|237738879|ref|ZP_04569360.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 2_1_31] gi|229423982|gb|EEO39029.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 2_1_31] Length = 473 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 272/483 (56%), Gaps = 57/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ I + + MYVCGPTVY++ HIGNARP I FD + R L Y G K Sbjct: 2 IKIYNTLTGHLDEFKPIKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 VTYV+N TD+DDK+I +A E+ SI I + + + +DT ++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANAENVSIKE------IAERYIKAYFEDTAQINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT++I MI +I++++ G+AYE+N ++ F+ YG S++ I++ + G R+ Sbjct: 114 KATDNIDGMINIIKSLVDKGYAYESNGDVYFEVKKYKEGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKKDALDFALWKSSKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L K F GR Sbjct: 234 PHHENEMAQSKCGCG-GTFARYWMHNGYININGEKMSKSSGSFVLLRDIL--KHFEGR-- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P++F+ L + + L + + Sbjct: 289 ---VIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENSLKRIKELNRENLDGTNDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 +K ++ + A+ D NT A+ + +L + K D F+ +A Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHVFELVKSVNKALD-EENFSKTAIEVLDEVYSYLV 404 Query: 390 ----HILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+++ E NIS + +L+ E R + K ++ +D IR +L G ++D Sbjct: 405 MIIEEVLGVKLKLEAEVNNISADLIELILELRKDAREQKNWALSDKIRDRLLELGIKIKD 464 Query: 445 YKN 447 K+ Sbjct: 465 GKD 467 >gi|290510194|ref|ZP_06549564.1| cysteinyl-tRNA synthetase [Klebsiella sp. 1_1_55] gi|289776910|gb|EFD84908.1| cysteinyl-tRNA synthetase [Klebsiella sp. 1_1_55] Length = 461 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 269/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A IR ++ HYR ++++ + L +A L + + + +D A + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGI--EVCKEHLNKN 404 + +D NT A L +ARE K D +AH +LG+ + + L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 405 ISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQVDDAEVAEIESLIQQRLNARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|186476148|ref|YP_001857618.1| cysteinyl-tRNA synthetase [Burkholderia phymatum STM815] gi|184192607|gb|ACC70572.1| cysteinyl-tRNA synthetase [Burkholderia phymatum STM815] Length = 465 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 181/472 (38%), Positives = 255/472 (54%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQNFVPLHEGEVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTL-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YK-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIAALHEDADALGIERPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +PQM+ +I+ + +G+AY+A + ++ + NYG+ S + +++ + G RV Sbjct: 114 PRATEFVPQMLGMIEKLEANGYAYQAADGDVNYAVRKFENYGALSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK+S P EP GWES +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQSKPDEPADTGWESKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A R + N W+HNG++ ++ KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQSEGATR-QTFVNYWMHNGYVQIDNEKMSKSLGNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID------ 348 + A V+R + HYR P++++ L +A L++ T G +D Sbjct: 288 --KYDAEVVRFFIARAHYRSPLNYSDVHLDDARGALARLYTALKDTPPQAGEVDWNEAYA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA----------------HIL 392 +A+ +D NT A+ L +L E + D Sbjct: 346 QRFRAAMNDDFNTPVAVSVLFELVSEVNRTRDAALARQLHGLGLVLGLLGREPRVYLQQA 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G V + L+ + AIE + R+ + K ++ AD IRK+L G LED Sbjct: 406 GASVGEGALD---TAAIEAKIAARVAAKQAKDYAEADRIRKELLDAGIALED 454 >gi|320354379|ref|YP_004195718.1| cysteinyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] gi|320122881|gb|ADW18427.1| cysteinyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] Length = 487 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 172/409 (42%), Positives = 236/409 (57%), Gaps = 38/409 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ Q ++ ++++YVCG T YD+ HIG+AR +VFD++ R LR+ G K Sbjct: 3 IRIYNTLSRRKEILQPLEEGHVKLYVCGITSYDYCHIGHARSALVFDMVVRYLRHR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TDIDDKII RA ++ I+ A + N +F D L L P +P+ Sbjct: 62 -VTFVRNFTDIDDKIINRANEQ----GIDSASLALRFIN--EFYTDMDALGTLRPDLEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+MI LI+++I G AY A+ ++ F YG S R + + + G RV Sbjct: 115 ATEHIPEMIGLIEDLIDKGMAYPADGDVYFRVERFVGYGQLSGRGLADMQAGARVEVNDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KEHPMDFVLWKAAKPGEPKWPSPWGEGRPGWHIECSAMSRKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSC A + AN+W+H+GF+ ++ KMSKS GNF+TI ++L + + Sbjct: 235 HENEIAQSCGASG-KPFANLWMHHGFVTIKEEKMSKSLGNFLTIRDVL-------KQYEP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGII----DPA 350 V+RL + T YR P+DFT ++R+ E + P T + D Sbjct: 287 EVLRLFIFSTQYRNPLDFTETALHDARAGLERMYECLAQVEDLPAEGTEGASVITDKDRT 346 Query: 351 VLSALY--------NDLNTVSAIQALHKLARESTKNHDLLPIFNASAHI 391 L++L ND NT A+ L + K LP A+A + Sbjct: 347 ALASLVDRFHQAMDNDFNTAQALAHLFDTVKLLNKVLRTLPERPAAADL 395 >gi|157146856|ref|YP_001454175.1| cysteinyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895] gi|157084061|gb|ABV13739.1| hypothetical protein CKO_02631 [Citrobacter koseri ATCC BAA-895] Length = 461 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 60 TLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKHNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKTVAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K+ D+ ++H +LG +E E ++ Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANAMASHLRKISGVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGELAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|320156698|ref|YP_004189077.1| cysteinyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] gi|56749448|sp|Q7MLR5|SYC_VIBVY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|319932010|gb|ADV86874.1| cysteinyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] Length = 460 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 264/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ + YG S++ +D+ + G RV + Sbjct: 114 ATQYIQEIIELVERLIERGFAYVADNGDVMFEVNKFDEYGKLSKQDLDQLQAGARVDVET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRCPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A +R ++ HYR ++++ + L +A L + ++ +G+ A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERL--YTSLRGLDFSAAPAGGEEYVSRFT 343 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K DL + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREINRLKTEDLANASALGALMRELADVIGILHQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED PD T W Sbjct: 404 GDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED--GPDG----TTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|51246780|ref|YP_066664.1| cysteinyl-tRNA synthetase [Desulfotalea psychrophila LSv54] gi|61216190|sp|Q6AJ23|SYC_DESPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50877817|emb|CAG37657.1| probable cysteinyl-tRNA synthetase [Desulfotalea psychrophila LSv54] Length = 489 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 187/490 (38%), Positives = 263/490 (53%), Gaps = 66/490 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL K Q I+P+++++YVCG T YD+ HIG+AR + FD++ R LRY + Sbjct: 3 IRVYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYL--DY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TDIDDKII RA + + + + +F D L L P +P+ Sbjct: 61 KVTFVRNFTDIDDKIIARANETGVTA------QALAERFIDEFHTDMDNLGTLRPDIEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +IQ ++ AY + ++ + +S P YG S R I++ + G R+ Sbjct: 115 ATEHIQEMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQ 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK S P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DLIFPH Sbjct: 175 KRNPMDFALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + AN WIH+GF+ ++ KMSKS GNF+TI ++L+ + Sbjct: 235 HENEIAQSEGANG-KPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILD-------HYHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGI-IDPAVLSA---- 354 ++R + T YR P+DF+ + +AE L + + +KG PA++SA Sbjct: 287 EILRAFIFSTQYRNPLDFSEIAMQDAETALVRLYECLHDIQQLAKGDPTLPALISAKDAA 346 Query: 355 ------------LYNDLNTV-------SAIQALHKLARESTKNHDLLPI---------FN 386 + ND NT AI+ +++ R T L + Sbjct: 347 KLNSIETRFQEAMNNDFNTALALGVLYDAIKIINRAQRALTDTPSALDVKMLKGSMTLIQ 406 Query: 387 ASAHILGI---------EVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQ 434 A I+G+ + KE + I I IE +Q+RL K ++ +D IR Sbjct: 407 KLAGIVGLLQEDANLFLQQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIRDI 466 Query: 435 LESKGFILED 444 L KG L+D Sbjct: 467 LLEKGITLKD 476 >gi|126173835|ref|YP_001049984.1| cysteinyl-tRNA synthetase [Shewanella baltica OS155] gi|187631633|sp|A3D302|SYC_SHEB5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|125997040|gb|ABN61115.1| cysteinyl-tRNA synthetase [Shewanella baltica OS155] Length = 459 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 185/483 (38%), Positives = 260/483 (53%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A++ +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA--------- 354 A +R +L HYR ++++ L +A L + T+ +D V +A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALER---LYTAIKDVDLTVAAAPAEEFVAKF 342 Query: 355 ---LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-----EVCK 398 + +D NT A L + RE + L A +LG+ E Sbjct: 343 KAAMDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFF 402 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L+ ER K +++AD R L G LED G T W Sbjct: 403 QGGGSYDEVAEIEALIVERNRARTEKDWAAADVARNCLNELGVELED------GPSGTTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|145589043|ref|YP_001155640.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|187629841|sp|A4SX62|SYC_POLSQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145047449|gb|ABP34076.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 473 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 190/476 (39%), Positives = 257/476 (53%), Gaps = 51/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ I P ++MYVCG TVYDF HIG+AR MIVFD++ R LR E Sbjct: 2 LQIYNTLSRSKQVFKPIVPGKVKMYVCGMTVYDFCHIGHARVMIVFDMVVRWLRASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + ++ IS +T++ D+ L + P +PR Sbjct: 61 -VQYVRNITDIDDKIIKRALEN------SEPISALTNRFIAAMHADSDELGLMHPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I QM +I +I + AY+ + ++ F +P YG S + +DE G RV Sbjct: 114 ATDYIQQMQGMIGKLIENELAYQGEDGDVNFAVRLLPRYGQLSGKTLDELNAGERVAIGG 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W SPWG GRPGWHIECSAMS LG FDIHGGG DL Sbjct: 174 GKRDPLDFVLWKSAKPEEPADTRWNSPWGEGRPGWHIECSAMSCDLLGAHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCA----DRIEKTA---NIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 FPHHENEIAQS A +R E A N W+HNG + + KMSKS GNF I ++L Sbjct: 234 QFPHHENEIAQSEGALYGQNRQENDAPFVNYWMHNGHIRVNEEKMSKSLGNFFLIRDVL- 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL- 352 +S+ V+R ML HYR PI+++ +L EA L++ T +D + Sbjct: 293 ------KSFDPEVVRFFMLKAHYRSPINYSDAQLEEARSGLTRLYTALTHIPEVDTVPID 346 Query: 353 ----------SALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILG- 393 A+ +D NT AI L LA E + LL + + L Sbjct: 347 LQNPWAKRFADAMNDDFNTPEAIAVLFDLASEVNRAQGAEKQMLAGLLKSLGGTLNFLQR 406 Query: 394 -----IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ + + S IE+ + R+ + K F+ AD IRK L +G +LED Sbjct: 407 DPTNFLQAGSKDQSGLSSEQIEEHIAARVAAKQAKDFAKADGIRKALLEQGVVLED 462 >gi|37679546|ref|NP_934155.1| cysteinyl-tRNA synthetase [Vibrio vulnificus YJ016] gi|37198290|dbj|BAC94126.1| cysteinyl-tRNA synthetase [Vibrio vulnificus YJ016] Length = 509 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 264/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 51 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 109 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + + D L P +PR Sbjct: 110 -LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFDALNMKRPDVEPR 162 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ + YG S++ +D+ + G RV + Sbjct: 163 ATQYIQEIIELVERLIERGFAYVADNGDVMFEVNKFDEYGKLSKQDLDQLQAGARVDVET 222 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 223 AKRCPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 282 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 283 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 334 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A +R ++ HYR ++++ + L +A L + ++ +G+ A Sbjct: 335 AETVRYFLMSGHYRSQLNYSEENLNQARASLERL--YTSLRGLDFSAAPAGGEEYVSRFT 392 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K DL + A ++GI K Sbjct: 393 AAMNDDFNTPEAYSVLFDMAREINRLKTEDLANASALGALMRELADVIGILHQDPEAFLK 452 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED PD T W Sbjct: 453 GDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED--GPDG----TTW 506 Query: 458 KQK 460 ++K Sbjct: 507 RRK 509 >gi|322388262|ref|ZP_08061866.1| cysteine--tRNA ligase [Streptococcus infantis ATCC 700779] gi|321140934|gb|EFX36435.1| cysteine--tRNA ligase [Streptococcus infantis ATCC 700779] Length = 447 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 178/469 (37%), Positives = 257/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLRDFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + +K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VANKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVSDLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ LET Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALETID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 288 ---GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDSGELQAFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ D NT + I + ++A+ ++ N+D + A + GI +E L++ I + Sbjct: 345 FVAAMDEDFNTANGITVVFEMAKWINSGNYDATVKEALTAMLEVFGIVFVEEVLDEEIEV 404 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 I+K + R + F++AD IR QL ++G L D K +G R TR Sbjct: 405 LIQKRQEAR----ANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|23097554|ref|NP_691020.1| cysteinyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] gi|30316161|sp|Q8ETZ9|SYC_OCEIH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|22775777|dbj|BAC12055.1| cysteinyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] Length = 468 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 176/475 (37%), Positives = 250/475 (52%), Gaps = 55/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ F+ ++ ++MYVCGPTVY++ HIGNARP IVFD + R L Y + Sbjct: 3 IQIYNTLTRQKEIFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEYRGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A+ +P+ + + +++D L T PR Sbjct: 62 -VDYVLNFTDVDDKIIKTAKDVGEEVPV------LADRFVNAYLEDVGALGVKKATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + + +I I +I G+AYEA+ ++ F S YG S + IDE + G R+ Sbjct: 115 VMDTMDDIIAFISALIEKGYAYEADGDVYFKPRSFDTYGKLSHQSIDELRSGARIQVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ E W+SPWG GRPGWHIECSAM +LG DIH GG DL FPH Sbjct: 175 KEDPLDFALWKQAKDDEIAWKSPWGEGRPGWHIECSAMVKKHLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + E AN W+HNG++N++ KMSKS GNF+ +L++ Sbjct: 235 HENEIAQSEAMNG-ETFANYWMHNGYINIDNEKMSKSLGNFVLARDLIQAH-------DP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILL------------------------SKWPQT 340 V+R ML HYR PI+FT L A+ L +KW Q Sbjct: 287 RVLRFFMLSVHYRNPINFTEALLESAKTSLERIQTAYHNLSHRRDSSLNLTNDDAKWLQL 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST----KNHDLLPIFNASAH------ 390 ++ + +D NT +AI L L++E+ +N + +A Sbjct: 347 VSAAM---SKFEQDMDDDFNTANAISVLFDLSKEANVYLQENQTSTEVIDAFQDAISQIL 403 Query: 391 -ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI + ++ + IE L++ER K + F+ AD IR L+ KG +LED Sbjct: 404 TVLGINILEDE-ETLLDETIEALIKERNEARKNRNFARADEIRDMLKEKGIVLED 457 >gi|302879529|ref|YP_003848093.1| cysteinyl-tRNA synthetase [Gallionella capsiferriformans ES-2] gi|302582318|gb|ADL56329.1| cysteinyl-tRNA synthetase [Gallionella capsiferriformans ES-2] Length = 456 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 180/473 (38%), Positives = 263/473 (55%), Gaps = 41/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R EF I+P+ +RMYVCG TVYD+ H+G+AR M+VFD++YR + + Sbjct: 2 LKIYNTLARDKQEFVPIEPNVVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWFKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + N++I +T + D L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAAEN------NESIHSLTQRFIDAMHVDADALGVTRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ +I + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 114 ATQYVPEMLEMIAKLEANGLAYQAADGDVNYAVRKFEGYGKLSGKSLEDLRAGERVEVTD 173 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + E W+S WGRGRPGWHIECSAM S LG+ FDIHGGG DL Sbjct: 174 AKNDPLDFVLWKHARDDEAEEVKWDSKWGRGRPGWHIECSAMGSKLLGEHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+L + Sbjct: 234 QFPHHENEIAQSEGAHQCSYV-NYWMHNGFVRVDNEKMSKSLGNFFTIREVL-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQTSTSKGI--ID------P 349 + V+R +L HYR P++++ L +A+ L + ++ ++ G+ +D Sbjct: 286 QYDPEVVRFFILRAHYRSPLNYSDAHLDDAKKALDRLYTALKSGSASGVRAVDWTEAYAV 345 Query: 350 AVLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI------EVCKEHL 401 +A+ +D NT AI L LA + +++ D A +LG+ E + Sbjct: 346 RFKAAMDDDFNTAEAIAVLFDLANDVNRSQSEDAAAQLKALGAVLGLLERDPTEFLQGAG 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + + I + + R K ++ AD IRK L + G +LED N +R+ Sbjct: 406 SDDAQIVGQ--IAARNAAKLAKNYAEADRIRKALLADGIVLEDSAAGTNWRRV 456 >gi|262278507|ref|ZP_06056292.1| cysteinyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202] gi|262258858|gb|EEY77591.1| cysteinyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202] Length = 473 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 189/477 (39%), Positives = 266/477 (55%), Gaps = 55/477 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ--GWSV 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L C AP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCAAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGSAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTETLDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----------------STKNHDLLPIFNASAH--- 390 +A+ +D NT A+ L +L +E ST H L I H Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRH-LTNILGLVQHDVD 408 Query: 391 -ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L ++ +E L + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 409 AFLKSDIGQEALTLS-DAEIEDFIQQRVDAKKAKDFAKADGIRQSLLDQGVVLEDTR 464 >gi|188997490|ref|YP_001931741.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|229558793|sp|B2V6B4|SYC_SULSY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188932557|gb|ACD67187.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 487 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 187/510 (36%), Positives = 266/510 (52%), Gaps = 81/510 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K +F I P +++Y CG TVYD+ H+G+ R +IVFD++ R LRY Sbjct: 3 LKIYNTLTGKKEDFAPIKPGEVKIYTCGVTVYDYNHVGHGRSLIVFDMIRRYLRYL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA+ E +P S+I+ K +++ D + +PR Sbjct: 61 NVIFVRNFTDVDDKIINRAKNE--CLPF----SVISDKFIKEYFDDAEKFRIEPADIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP +I IQ ++ G+AYEA+ ++ F YG S+R IDE G R+ Sbjct: 115 VTTHIPDIINFIQKLVDAGYAYEADGDVYFSVRKFKEYGKLSKRSIDELLAGARIEPGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + EP WESPWG+GRPGWH EC AM +LG+ DIHGGGLDL FPH Sbjct: 175 KKDPLDFALWKSAKAGEPYWESPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A WIHNG + + G+KMSKS GN+I + E+ + Sbjct: 235 HENEIAQAEALTG-KPFARYWIHNGLVTVNGQKMSKSLGNYIKLKEIYS-------KYEP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTE--------------AEILLSKWPQTSTSKGIIDPA 350 ++RL +L HYR P+DF+ ++ E AE+L +K P +G + A Sbjct: 287 DILRLLVLSVHYRSPLDFSWDKMEETKKAYERLKNAIEEAEVL-NKLPIDENFEGDLYNA 345 Query: 351 V-------LSALYNDLNTVSAIQALHKLARE--------------STKNHDLLPIFNASA 389 + SA+ +D NT A+ +L L RE S K + + Sbjct: 346 IQKAQSGFYSAMSDDFNTPEALASLFGLVREMNILRDKAIKHGGISKKAIESYKEAAKTL 405 Query: 390 HILGIEV---------CKEH-----------LNKNISIAIEKLVQERLILLKMKKFSSAD 429 H +G ++ C + +N+++ I+ L++ R K K+F+ AD Sbjct: 406 HDIGRDIFGLFDSLQPCIKQEEVKVKEKEESINEDL---IQVLIEAREKARKEKQFTIAD 462 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IR +L KG ILED T+WK+ Sbjct: 463 LIRDKLAEKGIILED------APFGTKWKK 486 >gi|269960838|ref|ZP_06175209.1| cysteinyl-tRNA synthetase [Vibrio harveyi 1DA3] gi|269834502|gb|EEZ88590.1| cysteinyl-tRNA synthetase [Vibrio harveyi 1DA3] Length = 460 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFNEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLNAAPAGGEEYVTRFT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GDAGDDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|161501802|ref|NP_761714.2| cysteinyl-tRNA synthetase [Vibrio vulnificus CMCP6] gi|30316151|sp|Q8D8R1|SYC_VIBVU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|319999475|gb|AAO11241.2| cysteinyl-tRNA synthetase [Vibrio vulnificus CMCP6] Length = 460 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ + YG S++ +D+ + G RV + Sbjct: 114 ATQYIQEIIELVERLIERGFAYVADNGDVMFEVNKFDEYGKLSKQDLDQLQAGARVDVET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRCPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-----------L 352 A +R ++ HYR ++++ + L +A L + ++ +G+ A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERL--YTSLRGLDFSAAPAGGEEYVSRFT 343 Query: 353 SALYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K DL + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREINRLKTEDLANASALGALMRELADVIGILHQDPDAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|91226019|ref|ZP_01260946.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 12G01] gi|269968727|ref|ZP_06182720.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 40B] gi|91189460|gb|EAS75737.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 12G01] gi|269826654|gb|EEZ80995.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 40B] Length = 460 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFNEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLNAAPAGGEEYVSRFT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|83748223|ref|ZP_00945249.1| Cysteinyl-tRNA synthetase [Ralstonia solanacearum UW551] gi|207743491|ref|YP_002259883.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum IPO1609] gi|83725064|gb|EAP72216.1| Cysteinyl-tRNA synthetase [Ralstonia solanacearum UW551] gi|206594889|emb|CAQ61816.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum IPO1609] Length = 465 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 180/472 (38%), Positives = 257/472 (54%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASAY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGALTDRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQANGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L+ Sbjct: 234 DLQFPHHENEIAQAEGANG-NTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVLKV---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTSK 344 + V+R +L +HYR ++++ L +A L++ P S S Sbjct: 289 ---YDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESH 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH-- 400 G A+ +D NT A+ L +LA E T++ L+ A ++G+ H Sbjct: 346 G---QRFREAMNDDFNTPVAMAVLFELASEVNKTRSPALVNQLAALGGVMGLLGRDPHAF 402 Query: 401 LNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + A +E ++ R + + F+ AD IR L + G +LED Sbjct: 403 LQGGVGAAADGLDAAEVEARIEARRVAKAERDFARADGIRADLLAAGIVLED 454 >gi|188584813|ref|YP_001916358.1| cysteinyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349500|gb|ACB83770.1| cysteinyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 469 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 185/492 (37%), Positives = 268/492 (54%), Gaps = 57/492 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK IK++NT+++K EF + MYVCGPTVYD+ H+GNAR ++FDV+ R L Y Sbjct: 1 MKMSIKLFNTMKKKKEEFVPKQEGKVDMYVCGPTVYDYFHVGNARAFLIFDVVRRYLDYK 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLA 118 + VTYV+NITDI+DK+I RA + D I++ + K T ++ D + Sbjct: 61 GYQ--VTYVQNITDIEDKMINRANE--------DGITVAELAEKYTSEYFDDARAIGIKD 110 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 H P+AT HI ++I +IQ+++ G+AY ++ FDT++ +YG R+ +E G R Sbjct: 111 ADHHPKATEHIAEIIEIIQDLLDKGYAYRQGGDVYFDTAAFDDYGKLCRQDPEELVSGAR 170 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V KKNPADF+LWK EP W+SP+G+GRPGWHIECSAMS YL DIH GG Sbjct: 171 VAVDDRKKNPADFVLWKSKKEGEPAWDSPFGQGRPGWHIECSAMSMKYLDTPLDIHAGGS 230 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE+AQS A + W+H G+L ++ RKMSKS GNF+T+ + +K+ Sbjct: 231 DLVFPHHENEVAQSEAATG-QDFCKYWMHVGYLEIDNRKMSKSMGNFLTVRDF--RQKYD 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIID 348 R V+RL ++ HYR P++FT + + +A+ L + + + S + + D Sbjct: 288 PR-----VLRLFLMSAHYRSPLNFTDELIEQAKSSLDRLDNFYNNLKFYLEKSREQELTD 342 Query: 349 P-------------AVLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAH 390 +A+ +D NT SA+ + LA+E + L N Sbjct: 343 KEQDIMEYLKQARTEFEAAMDDDFNTASALAVIFSLAKEINSYIGNGGENALVFKNTYDL 402 Query: 391 ILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +L + L + I IE+ +QER K K F AD IR +L +G ILED Sbjct: 403 LLEFDQVMGLLPETDEILPEEIEQKIQEREQARKQKDFQRADAIRDELRDRGIILED--T 460 Query: 448 PDNGQRMTRWKQ 459 P+ RWK+ Sbjct: 461 PEG----VRWKR 468 >gi|332306241|ref|YP_004434092.1| cysteinyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173570|gb|AEE22824.1| cysteinyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 464 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 179/484 (36%), Positives = 255/484 (52%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F + S + +YVCG TVYD +H+G+AR + FD++ R LR+ E Sbjct: 2 LHIYNTLTRQKELFTPLHESKVGLYVCGITVYDLSHMGHARTYLSFDLMVRYLRHKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + +T + D + L P +PR Sbjct: 61 -VNYVRNITDIDDKIIQRANEN------GETTRALTERTIAMMHDDFAAINLLEPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+P++I +I+ +I GHAY+A + +++FD SS +YG S++ +++ MG+RV Sbjct: 114 VTTHMPEIIAIIERLIQRGHAYQAKSGDVLFDVSSYSDYGKLSKQDLEQLNMGSRVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK P EP W SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DLIFP Sbjct: 174 DKDDPMDFVLWKTVKPGEPSWSSPWGEGRPGWHIECSAMNQKHLGEHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H G + ++ KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCA-YDTPYVNYWVHAGMVQVDSEKMSKSLGNFFTLRDVL-------KQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 A +R ++ HYR + ++ +T+A L + Q G Sbjct: 286 AETLRYFLMSAHYRSQLSYSEDNITQARSALERLYTALRDVNANIQVDMQSGDYLARFDK 345 Query: 354 ALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASAHILGI--EVCKEH 400 A+ +D NT A+ L +A+E ++ DL I +LGI E+ Sbjct: 346 AMDDDFNTPEAMAVLFDVAKELNKAKAEEQSGHSRASDLAGILLNLGKVLGILQRSPSEY 405 Query: 401 LNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 L + A IE L++ R K + +AD R L ILED G T Sbjct: 406 LQGDQQDADEVAEIEALIKARNDARAAKDWPAADAARDGLNVLNIILED------GPSGT 459 Query: 456 RWKQ 459 W++ Sbjct: 460 TWRK 463 >gi|254172364|ref|ZP_04879039.1| cysteinyl-tRNA synthetase [Thermococcus sp. AM4] gi|214033293|gb|EEB74120.1| cysteinyl-tRNA synthetase [Thermococcus sp. AM4] Length = 476 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 60/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 I+IYNTL R+ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L R Y Sbjct: 3 IRIYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII+RA + + + + + F++D L Sbjct: 61 --TVLMVMNFTDIDDKIIKRANE------TGEDPKELAERFLRIFLEDMKALKVKPADVY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ ++I ++ + G+AYE ++ + F+ +YG S+ K+++ G RV Sbjct: 113 PRVTEHMDEIINFVKKLEEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK++ P EP WESPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIF Sbjct: 173 EGKRNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQS C + + W+H GFL + G KMSKS GNF+T+ ELL + Sbjct: 233 PHHENEIAQSEACFGH--EWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELL-------KR 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS--------------------KW--PQ 339 + VIRL +L HYR P+D++ + + A+ L +W P+ Sbjct: 284 YDPEVIRLFVLQRHYRSPLDYSEEGIEHAKNNLERLYNTLENIRVAMGRAEISFRWDEPE 343 Query: 340 TSTSKGIIDP--AVLSALYNDLNTVSAIQALHK--------LARESTKNHDLL----PIF 385 + I D A+ +D NT A++A+ + L T +L F Sbjct: 344 FRVYEAIRDARRKFYEAMDDDFNTAEALKAVFEVSNAINRYLTEVETPKESILRKAWEFF 403 Query: 386 NASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + G+ + KE N I+ L++ R L K +KF AD IR +L G LE Sbjct: 404 RDVGEVFGLFEDYFKEQRAGNEEALIDLLIEVRAQLRKERKFDLADRIRDELRKLGIQLE 463 Query: 444 D 444 D Sbjct: 464 D 464 >gi|331701830|ref|YP_004398789.1| cysteinyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929] gi|329129173|gb|AEB73726.1| cysteinyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929] Length = 468 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 179/476 (37%), Positives = 260/476 (54%), Gaps = 55/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK +F+ I P ++MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 2 LQIFNTLTRKKEKFEPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I ARQ H ++ I K F++DT L + PR Sbjct: 61 -VKYVSNFTDVDDKMINAARQNHTTV------GAIADKYINAFMQDTAALNISSNVIHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 AT +IP++I ++ ++ G+AY+ + ++ F +YG+ +D+ ++G PE Sbjct: 114 ATENIPEIIDFVKTLVDKGYAYDVDGDVYFRARKFKSYGALPHINVDQLEIGASQHVNPE 173 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK +P DF LWK+S E W+SPWG+GRPGWHIECS MS+ YLGK DIHGGG DL Sbjct: 174 EMAKKEDPIDFALWKKSKGDEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 IFPHHENE AQS A+ + W+HNGF+ + + KMSKS GNFIT+++LL Sbjct: 234 IFPHHENERAQS-EANTGQTFVKYWMHNGFVTIGDDNEKMSKSLGNFITVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 ++ VIRL M THYR PI ++ + EA L K P+ Sbjct: 287 -KNLDGQVIRLLMSTTHYRRPIQYSDASVKEASSNLKKLQTAFNNLEYRLHNADEGDDPK 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS----------- 388 T I A+ +D N + I A+++LA+ + + +F S Sbjct: 346 TDQEVRQIVADFTDAMDDDFNVQNGIAAVYELAKFANTYSERETVFKLSLQFIINTLRQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + GI++ + L + I L+ ER K F +D IR++L+++G +LED Sbjct: 406 SGVFGIKLEQSELKDD---EIWSLIHEREQARHDKDFIRSDEIREELKARGIVLED 458 >gi|121593996|ref|YP_985892.1| cysteinyl-tRNA synthetase [Acidovorax sp. JS42] gi|187629817|sp|A1W6E1|SYC_ACISJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120606076|gb|ABM41816.1| cysteinyl-tRNA synthetase [Acidovorax sp. JS42] Length = 458 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 182/464 (39%), Positives = 257/464 (55%), Gaps = 43/464 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + EF ++P ++RMYVCG TVYD H+G+AR MI FDV+ R LR Sbjct: 3 LRIYNTLSRALEEFSPLEPGHVRMYVCGMTVYDLCHLGHARSMIAFDVVQRWLRA--SGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + +D L PTH+PR Sbjct: 61 AVTYVRNITDIDDKIIKRA------VENGETIRSLTDRMIDALHQDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV + Sbjct: 115 ATAYVPQMLDMIGTLQGKGLAYQAGNGDVNYAVRKFPGYGKLSGKSLDELNAGERVAVQD 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + P EP W SP+G GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKHDPLDFVLWKSAKPEEPADVKWRSPFGEGRPGWHIECSAMGCALLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A +W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPFARLWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A +R ++ +HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 EYDAETVRFFVVRSHYRSPLNYSNVHLDDARAALKR---LYTALSLVAPAPVEVDWAEGY 343 Query: 353 -----SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVC--KEHLNK 403 +A+ D T A+ L LA E +K+ + A LG+ ++ L Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFDLAGEVNRSKSPAAAGLLKALGGHLGLLQADPQDFLKA 403 Query: 404 NISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + AI+ + R K F+ AD IR L ++G +L+D Sbjct: 404 GAGLDEAAIQAQIAARATAKAAKNFAEADRIRNDLLAQGIVLKD 447 >gi|225851008|ref|YP_002731242.1| cysteinyl-tRNA synthetase [Persephonella marina EX-H1] gi|254781689|sp|C0QRE6|SYC_PERMH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|225645417|gb|ACO03603.1| cysteinyl-tRNA synthetase [Persephonella marina EX-H1] Length = 487 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 181/508 (35%), Positives = 261/508 (51%), Gaps = 75/508 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF I P +++Y CG TVYD H+G+ R +IVFDV+ R LRY Sbjct: 3 LKVYNTLTGKKEEFVPIKPGEVKIYTCGVTVYDVNHVGHGRSLIVFDVIRRYLRYL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA+ E +P ++I + +++ +D +PR Sbjct: 61 NVYFVRNFTDVDDKIINRAKNE--CLPF----TVIADRYIKEYFQDAENFRIEPADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP +I IQ +I G+AYE ++ F YG S+R +DE G RV Sbjct: 115 VTTHIPDIIDFIQRLIDKGYAYEVEGDVYFSVRKFKEYGKLSKRSVDELIAGARVEPGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL FPH Sbjct: 175 KRDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE+AQ+ +D+ A WIHNG + + G+KMSKS GN+IT+ E+ + Sbjct: 235 HENELAQAEALSDK--PFARYWIHNGLVTVNGQKMSKSLGNYITLKEIYS-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEI-------------LLSKWPQTSTSK------ 344 V+RL +L HYR P+DF+ +++ E + +L K P+ Sbjct: 286 PDVLRLLVLSVHYRSPLDFSWEKMEETKKAYERLKGAIDEYEILKKLPENPDFDEHLYDE 345 Query: 345 -GIIDPAVLSALYNDLNTVSAIQALHKLARE----------------------------- 374 + +A+ +D NT A+ +L L RE Sbjct: 346 IAKAEQGFYAAMSDDFNTPEALASLFTLVREMNILRDKAVKSGGISKKALESYKEASDVL 405 Query: 375 STKNHDLLPIFNASAHILGIEVCK-EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIR 432 + ++ +F++ + +E K E + I +E L++ R K K+F ADYIR Sbjct: 406 HSIGKEIFGLFDSLQPCIEVEEIKVEKAEEKIDTQLVEALIEVRNKARKEKQFEIADYIR 465 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++L G ++ED P T+WK+K Sbjct: 466 EKLSQLGIVIED--TPVG----TKWKKK 487 >gi|332158896|ref|YP_004424175.1| cysteinyl-tRNA synthetase [Pyrococcus sp. NA2] gi|331034359|gb|AEC52171.1| cysteinyl-tRNA synthetase [Pyrococcus sp. NA2] Length = 476 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 195/494 (39%), Positives = 258/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF+ I +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 LKVYNTLTKRKEEFKPIREGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEH--KGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RAR+ + + K + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIRRARE------TGEDPKELAEKFIKVFLEDMNALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I I+ + G+AYE + + F+ YG S KI+E + G RV Sbjct: 115 VTEHIGDIIDFIKKLEEKGYAYEGKDGVYFEVQKFKEYGKLSGIKIEELRKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C + W+H GF+ ++G KMSKS GNF+T+ ELL+ + Sbjct: 235 HENEIAQSEACFGH--EWVRYWLHTGFVMVKGEKMSKSLGNFVTVRELLQ-------RYS 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------------DPA 350 VIR +L HYR P+D++ + L A+ L + T + I D Sbjct: 286 PEVIRFFVLQKHYRSPLDYSEEGLQHAKNNLERLYNTLENIRIAMERAELAYTWDEDDYE 345 Query: 351 VLSALYN-----------DLNTVSAIQALHKLA---------RESTKNHDL---LPIFNA 387 V A+ N D NT A++A+ +++ +E K L L F Sbjct: 346 VYEAIKNARKKFYEAMDDDFNTAEALKAVFEVSNAINKYLTEKERPKEAILRKALEFFKV 405 Query: 388 SAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + I GI + KE + I+ LV R L K K+F AD IR++L G LE Sbjct: 406 VSEIFGIFEDYFKEEKREIEEELIKVLVDVRSQLRKEKRFDLADKIREELRRLGIQLE-- 463 Query: 446 KNPDNGQRMTRWKQ 459 D GQ T WK+ Sbjct: 464 ---DRGQE-TVWKR 473 >gi|238893488|ref|YP_002918222.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545804|dbj|BAH62155.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 461 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 268/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A IR ++ HYR ++++ + L +A L + + + +D A + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGI--EVCKEHLNKN 404 + +D NT A L +ARE K D +AH +LG+ + + L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 405 ISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQVDDAEVAEIESLIQRRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|325121583|gb|ADY81106.1| cysteinyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2] Length = 473 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 189/477 (39%), Positives = 267/477 (55%), Gaps = 55/477 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWN--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L CLAP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY A+N ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + + +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQKTTETLDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----------------STKNHDLLPIFNASAH--- 390 +A+ +D NT A+ L +L +E ST H L I H Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRH-LTNILGLVQHNVD 408 Query: 391 -ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L ++ +E L+ + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 409 DFLKSDIGQEALSLS-DAEIEDFIQQRVDAKKAKDFAKADGIRQSLLDQGVVLEDTR 464 >gi|299770841|ref|YP_003732867.1| cysteinyl-tRNA synthetase [Acinetobacter sp. DR1] gi|298700929|gb|ADI91494.1| cysteinyl-tRNA synthetase [Acinetobacter sp. DR1] Length = 473 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 186/476 (39%), Positives = 268/476 (56%), Gaps = 53/476 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR V Sbjct: 6 LYNSEQRKKVEFVPRKEGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWN--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + + I +T++ +D L C AP P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------GETIQQLTTRFIDAMNEDAANLGCAAPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I N++ G AY AN ++ F+ + YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGNLVNKGSAYPAANGDVYFEVTKFEKYGRLSGRKLDDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQS-EASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVL-- 352 VIR ++ +HYR P++F+ L EA+ L+++ + T+ +D + + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQQMYGQTTTETLDQSFIER 349 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILGI------- 394 +A+ +D NT A+ L +L +E + D + ++ +ILG+ Sbjct: 350 FNNAMCDDFNTAEAMAVLFELNKELNRAVKEEQADQATVLYSTLRYLTNILGLVQHNVDD 409 Query: 395 ----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ +E L + IE +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQEALTLS-DAEIEDFIQQRVDAKKAKDFAKADGIRQSLLDQGVVLEDTR 464 >gi|303290903|ref|XP_003064738.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453764|gb|EEH51072.1| predicted protein [Micromonas pusilla CCMP1545] Length = 479 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 170/374 (45%), Positives = 221/374 (59%), Gaps = 32/374 (8%) Query: 11 LERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGEKCVT 67 + RK F DP + + MYVCG TVYD++HIG+AR + FDVLYR L R Y VT Sbjct: 1 MTRKKEPFAPNDPDDKKVSMYVCGVTVYDYSHIGHARVYVAFDVLYRTLTRLGYD---VT 57 Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127 YVRN TD+DDKII+RA + + + + F +D + L CL PT +PRAT Sbjct: 58 YVRNFTDVDDKIIKRANEN------GEECDALVERFIAAFHEDMSSLGCLPPTMEPRATR 111 Query: 128 HIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 H+ ++ + + ++ GHAY A ++ F S+P YG S RK+++ + G RV KK Sbjct: 112 HVDDILRVTEALVEKGHAYPAEGGDVYFSVDSLPTYGKLSGRKLEDNRAGERVAIDERKK 171 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHH 245 NPADF LWK S P EP W SPWG GRPGWHIECSAM + + GK DIHGGG DL+FPHH Sbjct: 172 NPADFALWKASKPGEPSWASPWGEGRPGWHIECSAMIDATFGGKSIDIHGGGQDLVFPHH 231 Query: 246 ENEIAQS-----CCADRIEKT-----ANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 ENE+AQS CC D + W+HNGF+ ++ KMSKS GNF TI E+ T Sbjct: 232 ENELAQSTAFCGCCDDAKDAKDAPPFVKYWVHNGFVKVDSEKMSKSLGNFFTIREV--TA 289 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDPAVLSA 354 K+ A +R +L THYR I++T + L EA L QT S + + AV +A Sbjct: 290 KY-----DATALRWMLLGTHYRAAINYTQRALEEASDRLYYLYQTLSEASDETETAVGAA 344 Query: 355 LYNDLNTVSAIQAL 368 L +DLNT AI +L Sbjct: 345 LSDDLNTPLAIASL 358 >gi|258621406|ref|ZP_05716440.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM573] gi|262171188|ref|ZP_06038866.1| cysteinyl-tRNA synthetase [Vibrio mimicus MB-451] gi|258586794|gb|EEW11509.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM573] gi|261892264|gb|EEY38250.1| cysteinyl-tRNA synthetase [Vibrio mimicus MB-451] Length = 459 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 259/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L+Q +I G AY A+N +++F+ YG S++ +++ + G RV + Sbjct: 114 ATAYIEEIIALVQRLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLEQLQAGARVDVEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYLSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE K+ DL + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDLTNASALGSLMRELADVIGILYQEPETFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEEAEQIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|212223750|ref|YP_002306986.1| cysteinyl-tRNA synthetase [Thermococcus onnurineus NA1] gi|229558797|sp|B6YUQ3|SYC_THEON RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212008707|gb|ACJ16089.1| cysteinyl-tRNA synthetase [Thermococcus onnurineus NA1] Length = 476 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 186/481 (38%), Positives = 250/481 (51%), Gaps = 60/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 I++YNTL ++ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L R Y Sbjct: 3 IRVYNTLTKQKEEFRPLREGEVRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEHRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII RA + + + K + F++D L Sbjct: 61 --TVLMVMNFTDIDDKIIRRANE------TGEDPKELAEKFLRYFLEDMKALKVKPADIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HI +I ++ + G+AYE N+ + F+ +YG S K++E G RV Sbjct: 113 PRVTEHIQDIIDFVRKLQEKGYAYEGNDGVYFEVRKFKDYGKLSGIKLEELVKGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK++ P EP WESPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIF Sbjct: 173 EGKKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQS C + W+H GF+ + G KMSKS GNF+TI ELL+ Sbjct: 233 PHHENEIAQSEACTGH--EWVRYWLHTGFVMVSGEKMSKSLGNFVTIRELLQ-------K 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIIDPA------- 350 + VIR +L HYR P+D+T + + A E L + + D A Sbjct: 284 YSPEVIRFFVLQKHYRSPLDYTEEGIQHAKNNLERLYNTLENIRVAMEKADVAFRWDEEE 343 Query: 351 -------------VLSALYNDLNTVSAIQALHKLAR---------ESTKNHDL---LPIF 385 A+ +D NT A++A+ +++ E K L L F Sbjct: 344 FELYETVREARKKFYDAMDDDFNTAEALKAVFEVSNAVNRYLTKVEKPKESVLRKALEFF 403 Query: 386 NASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + + G+ + KE + IE LV R L K + F+ AD IR +L++ G LE Sbjct: 404 KIVSEVFGLFEDYFKEQKAGDEEALIELLVSVRAELRKQRNFTLADKIRDELKALGIQLE 463 Query: 444 D 444 D Sbjct: 464 D 464 >gi|331006994|ref|ZP_08330231.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC1989] gi|330419182|gb|EGG93611.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC1989] Length = 478 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 188/499 (37%), Positives = 268/499 (53%), Gaps = 66/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F ID IR+YVCG TVYD+ HIG+AR +I FDV+ R LR + Sbjct: 3 LTIYNTLAREKVIFTPIDAGKIRLYVCGMTVYDYCHIGHARVLISFDVIVRFLRSQGWD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII RA + ++ I+ + +D L L P +PR Sbjct: 62 -VEYVRNITDVDDKIINRAEEN------GESSEILAQRFIDAMHEDERALNILPPNQEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ +I +++ +I +AY A NN++ + NYG S +K DE G RV Sbjct: 115 ATAHMDNIIAMVKTLINKNYAYVASNNDVYYRVGKFGNYGQLSGKKPDELMAGARVEVGD 174 Query: 184 HKKNPADFILWKRSTPMEP---------GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 K++P DF LWK P WESPWG GRPGWHIECSAMS LG FDIH Sbjct: 175 IKEDPRDFALWKAIDPSNVVGDGKNAPVSWESPWGAGRPGWHIECSAMSKSCLGNSFDIH 234 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHENEIAQS A+ K N W+H G + ++G KMSKS GNF TI ++L Sbjct: 235 GGGPDLPFPHHENEIAQSEAANGC-KYVNYWLHAGAVRVDGEKMSKSLGNFFTIRDVL-- 291 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA 354 + + + VIR ++ +HYR I+++ L EA+ L ++ QT ++PA + + Sbjct: 292 -----KKYHSEVIRYLIVNSHYRSSINYSEDNLIEAKSGLDRFYQTLKHYTDVEPAAIES 346 Query: 355 LY-------------NDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILG 393 L +D NT A+ +++L + ++ K L+ A A+ILG Sbjct: 347 LSDSVYYQHFVDSMNDDFNTRIALSGMYELIKTINTVAVDDAEKAKKLVAELKAMANILG 406 Query: 394 I------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + + + + +I + IE L+ +R+ K K++ AD IR+QL+ +G + Sbjct: 407 VLQADPTEFLQAEDKTSQVVGLSIDV-IETLISQRIQAKKDKQYQRADDIRQQLDDQGVL 465 Query: 442 LEDYKNPDNGQRMTRWKQK 460 LED + T W++K Sbjct: 466 LEDSREG------TAWRRK 478 >gi|296082122|emb|CBI21127.3| unnamed protein product [Vitis vinifera] Length = 474 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 186/483 (38%), Positives = 258/483 (53%), Gaps = 75/483 (15%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD +HIG+AR + FDVLYR LR+ E V YVRN TD+DDKII RA E Sbjct: 1 MYVCGVTAYDLSHIGHARVYVSFDVLYRYLRHLEYE--VNYVRNFTDVDDKIIARA-NEM 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 PIN ++ + Q+F D T L CL P+ +P ++H+PQ+I +I+ II + AY Sbjct: 58 GEDPIN-----LSRRYCQEFHVDMTYLHCLPPSVEPCVSDHMPQIIDMIKQIIDNDCAYR 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 ++ F P YG S RK+++ + G RV KKNPADF LWK + EP W+SP Sbjct: 113 VEGDVYFSVDKFPEYGRLSGRKVEDNRAGERVAVDSRKKNPADFALWKAAKKGEPFWDSP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG GRPGWHIECSAMS+ YLG FDIHGGG+DL+FPHHENEIAQSC A + + + WIH Sbjct: 173 WGPGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAACK-QSNISYWIH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NGF+ ++ KMSKS GNF TI ++++ + +RL ++ THYR PI+++ +L Sbjct: 232 NGFVTIDSEKMSKSLGNFFTIRQVIDI-------YHPLALRLFLIGTHYRSPINYSDVQL 284 Query: 328 TEAEILLSKWPQ------------------------------------TSTSKGIIDPAV 351 A + Q TS S + P V Sbjct: 285 ESASDRVFYIYQTLHDCQNAMDQDDMTKKDSVPPHILDCINKFYNDFLTSMSDDLHTPVV 344 Query: 352 LSALYNDLNTVS----------------AIQALHKLARESTKNHDLLPIFNASAHILGIE 395 L+AL + L T++ ++ AL K+ R+ L+P + A +L + Sbjct: 345 LAALSDPLKTINDLLHTRKGKKQELRLESLAALEKVIRDVLTILGLMPASYSEA-LLQLR 403 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +K I + ++ER + K K++ +D IRK L + G L D +PD T Sbjct: 404 EKALKRSKLTEDHILQKIEERTMARKNKEYEKSDAIRKDLAAVGIALMD--SPDG----T 457 Query: 456 RWK 458 W+ Sbjct: 458 TWR 460 >gi|290476082|ref|YP_003468980.1| cysteine tRNA synthetase [Xenorhabdus bovienii SS-2004] gi|289175413|emb|CBJ82216.1| cysteine tRNA synthetase [Xenorhabdus bovienii SS-2004] Length = 460 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 183/482 (37%), Positives = 263/482 (54%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHEGKVGMYVCGITIYDLCHIGHGRTFVAFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N++ +T++ + D L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRATEN------NESCDALTTRMLSEMHSDFDALNIQRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + + +I GHAY A+N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATQHISEIIQITEELINRGHAYVADNGDVMFSIDTNPDYGLLSRQDLEQLQAGARVEIAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGVGRPGWHIECSAMNGKQLGQHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCA-HGGPYVNYWMHSGMVMVDKEKMSKSLSNFFTIRDVLGY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + T + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDKSAQPTGSEAFEARFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILG-IEVCKE------ 399 + +D NT A L +ARE + L A ILG +E E Sbjct: 346 MNDDFNTPEAYSVLFDIAREINCLKTENLAAANGLAAELRKLAGILGLLEQEPEQFLQGG 405 Query: 400 -HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 H++ +++ IE L+++R K+++ AD R QL + LED G + T W+ Sbjct: 406 AHVDDDVA-QIEALIKQRNDARTNKEWALADAARDQLNAMRIELED------GPQGTTWR 458 Query: 459 QK 460 +K Sbjct: 459 RK 460 >gi|77459860|ref|YP_349367.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] gi|109894924|sp|Q3KA28|SYC_PSEPF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77383863|gb|ABA75376.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] Length = 460 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 176/478 (36%), Positives = 257/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T + +D RL P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFEALTERMIAAMHEDEARLNIKKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA--------L 355 V+R ++ +HYR I+++ L +A+ L ++ + PA A + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPKVAPAGGEAFVERFTQVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPI--------FNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLDAAAGLAARLKELASVLGVLQLEADDFLQAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A ++ L+Q RL K ++ +D IR QL + G +LED G+ T W+ Sbjct: 406 EGRVDAAEVDALIQARLTARANKDWAESDRIRDQLTAMGVVLED------GKGGTTWR 457 >gi|291543500|emb|CBL16609.1| cysteinyl-tRNA synthetase [Ruminococcus sp. 18P13] Length = 464 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 259/471 (54%), Gaps = 52/471 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYGEK 64 +YNT+ RK E + +Y CGPTVY+F HIGNARP+ FDVL R L R Y Sbjct: 3 LYNTMSRKKEELLPQQGKQVNIYACGPTVYNFIHIGNARPICAFDVLRRYLTWRGY---- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII+RA +E S + + K ++ D L + P+ Sbjct: 59 TVKYVQNFTDVDDKIIKRANEEGSSA------AQVAEKYIAEYKTDAHGLNVMDADVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I ++ ++ GHAYEA+ ++ F T+S P YG S+ +++ + G R+ Sbjct: 113 VTTCMQDIIDFVKALVDSGHAYEADGDVYFRTASFPEYGKLSKNSMEDLQAGARIGVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF +WK + P EP W+SPWG+GRPGWHIECSAMS YLG DIH GG DLIFPH Sbjct: 173 KESALDFAVWKAAKPGEPYWDSPWGKGRPGWHIECSAMSRKYLGDTLDIHCGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN+W+HNG++N++ +KMSKS GNF T E+ E K+G Sbjct: 233 HENEIAQSESVTG-KPLANLWMHNGYINVDNKKMSKSLGNFFTAREVAE--KYG-----Y 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDP------ 349 V+R M+ HYR PI++ V+ L + L + + G DP Sbjct: 285 EVVRYMMVQAHYRSPINYCVELLDACKASLERLYTCRDTLDRAIANAPAGAADPDSLALF 344 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARE-STKNHDLLP----------IFNASAHILG 393 A ++A+ +DLNT + L L R+ +T+++D +F+ +LG Sbjct: 345 DQRKQAFITAMDDDLNTADGVSVLFDLVRDLNTRSNDPATTKDTLTAGARLFDELTGVLG 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ N+ I +++LV R + K K F+ AD +R ++ + G+ +++ Sbjct: 405 LLYNRKQGNE-IPAQVQELVDARTVARKAKDFAEADRLRDEIAALGYAVKE 454 >gi|145633713|ref|ZP_01789439.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 3655] gi|144985473|gb|EDJ92294.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 3655] Length = 459 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 183/482 (37%), Positives = 267/482 (55%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S E W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENELSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCA-HGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R +L HYR ++++ + L A+ L + + +G AV Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERL--YTALRGTDQSAVAFGGENFVETFR 343 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCK 398 A+ +D NT +A+ L ++ARE + K + L ILG+ + + Sbjct: 344 EAMDDDFNTPNALSVLFEMAREINKLKTEDTEKANGLAARLRELGAILGLLQQDPEKFLQ 403 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K +++AD R +L + G +LED G T W+ Sbjct: 404 AGSDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWR 457 Query: 459 QK 460 ++ Sbjct: 458 KQ 459 >gi|295401941|ref|ZP_06811904.1| cysteinyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312109240|ref|YP_003987556.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] gi|294976071|gb|EFG51686.1| cysteinyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311214341|gb|ADP72945.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] Length = 466 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 262/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + E Sbjct: 4 IRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ AR+ +P + + Q + +D T L C PR Sbjct: 63 -VKYVSNFTDVDDKLIKAARELGEDVPT------VAERFIQAYFEDITALGCKKADVHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE + ++ + T YG S + IDE K G R+ Sbjct: 116 VTENMDTIIEFIQALVEKGYAYEVDGDVYYRTRKFAEYGKLSHQSIDELKAGARIEIGEK 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 176 KEDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 236 HENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------RQIDP 287 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID------ 348 V+R ML HYR PI+++ ++RL A L Q+ST+ D Sbjct: 288 QVLRFFMLSVHYRHPINYSEELLENAKKGLERLKTAYFNLKHRLQSSTNLTDDDEQWLAR 347 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLAREST-----KN------HDLLPIFNASAHIL 392 A + + +D NT + I L +LA+++ KN H L +L Sbjct: 348 IQEQHEAFIREMDDDFNTANGIAVLFELAKQANLYLHEKNTSERVIHAFLRELEQLLDVL 407 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI + + + + IE L+Q+R K + F+ AD IR +L +K ILED P Sbjct: 408 GITLQE---EELLDEEIEALIQKRNEARKNRNFALADQIRDELRAKNIILED--TPQG-- 460 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 461 --TRWKR 465 >gi|24111894|ref|NP_706404.1| cysteinyl-tRNA synthetase [Shigella flexneri 2a str. 301] gi|30062010|ref|NP_836181.1| cysteinyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|61216306|sp|Q83M27|SYC_SHIFL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24050695|gb|AAN42111.1| cysteine tRNA synthetase [Shigella flexneri 2a str. 301] gi|30040254|gb|AAP15987.1| cysteine tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|313646855|gb|EFS11312.1| cysteinyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|332761515|gb|EGJ91797.1| cysteinyl-tRNA synthetase [Shigella flexneri 2747-71] gi|332768439|gb|EGJ98623.1| cysteinyl-tRNA synthetase [Shigella flexneri 2930-71] Length = 461 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+N DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNRMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|319399722|gb|EFV87971.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis FRI909] Length = 466 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 263/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T R Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNSR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGII 347 V+R M+ HYR PI++ ++ + E E + + + S I Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREEIATDLEEQSEYIQQI 345 Query: 348 DPAV---LSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILG 393 D + + + +D NT +A+ A + LA+ E+T + +L +++ + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + IE+L++ER K K F+ AD IR L+++ ILED Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILED 456 >gi|281599852|gb|ADA72836.1| Cysteinyl-tRNA synthetase [Shigella flexneri 2002017] gi|332763819|gb|EGJ94057.1| cysteinyl-tRNA synthetase [Shigella flexneri K-671] gi|333021864|gb|EGK41112.1| cysteinyl-tRNA synthetase [Shigella flexneri K-304] Length = 461 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNSDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+N DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNRMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|163938097|ref|YP_001642981.1| cysteinyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|229558616|sp|A9VNA2|SYC_BACWK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|163860294|gb|ABY41353.1| cysteinyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] Length = 465 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 260/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFMPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS----------- 343 +IR ML HYR PI+F+ ++R+ A L ++ST Sbjct: 287 QLIRFFMLSVHYRHPINFSEDLLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAE 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 MEKFQVAFEEAMDDDFNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFSIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ + + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARQNRDFALSDQIRDDLKGRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|258626834|ref|ZP_05721641.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM603] gi|258580881|gb|EEW05823.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM603] Length = 459 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/480 (37%), Positives = 260/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L+Q +I G AY A+N +++F+ YG S++ +++ + G RV + Sbjct: 114 ATAYIEEIIALVQRLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLEQLQAGARVDVEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRRVPAAGGEEYLSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE K+ DL + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDLTNASALGSLMRELADVIGILYQEPETFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R +K +++AD R +L G +LED N T W++K Sbjct: 406 AEDEEAEQIEALIKLRNDSRAVKDWANADMARDKLNEMGIVLEDCPNG------TTWRRK 459 >gi|167550932|ref|ZP_02344688.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324269|gb|EDZ12108.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 461 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGTDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|152996132|ref|YP_001340967.1| cysteinyl-tRNA synthetase [Marinomonas sp. MWYL1] gi|189082069|sp|A6VX53|SYC_MARMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150837056|gb|ABR71032.1| cysteinyl-tRNA synthetase [Marinomonas sp. MWYL1] Length = 460 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/467 (38%), Positives = 262/467 (56%), Gaps = 41/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K F+ I+ + MYVCG TVYDF HIG+AR MI FDV+ R +R+ E Sbjct: 2 LKIYNTLSGKKEIFKPIEEGKVGMYVCGNTVYDFCHIGHARAMISFDVISRFIRHLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N++ +T + +D RL P +P+ Sbjct: 61 -LNYVRNITDVDDKIIKRAEEN------NESTQSLTERMIAAQREDELRLGNKMPDREPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I ++Q +I G AY+ + ++ + + +YG + RK+++ G R+ + Sbjct: 114 ATEFMQEIIDMVQVLIDKGFAYQGTSGDVYYRATKFKDYGKLNNRKLEDMLAGARIDVEV 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK++ E W SPWG GRPGWHIECSAMS++ LG FDIHGGG DL FP Sbjct: 174 AKEHPADFVLWKQAKAGEVSWSSPWGEGRPGWHIECSAMSTNCLGSHFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N W+H G + + KMSKS GNF T+ ++L KF Sbjct: 234 HHENEIAQSEAATGKE-YVNYWMHCGAVRVNNEKMSKSLGNFFTVRDVL--AKFN----- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPAVLS-----AL 355 V+R M+ + YR ID++ Q L EA++ L + + + +P V + A+ Sbjct: 286 PEVVRYLMVSSQYRSAIDYSDQSLLEAKVALERLYTALRQQQVAESFEPTVFTERFEEAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGIEVCK-EHLNKNIS 406 +D NT A+ L +L RE K D L + A +LG+ E+ +N + Sbjct: 346 KDDFNTAVAVSVLFELVRELNKAKTEDANKASLLAAELRSLAELLGLLYQDPEYFLQNST 405 Query: 407 -------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +AI+ L+ ER K K F+ +D IR +L S+G L D + Sbjct: 406 VSEGLGEVAIQALIDERTQARKDKNFARSDEIRDELASQGIELLDSR 452 >gi|260892309|ref|YP_003238406.1| cysteinyl-tRNA synthetase [Ammonifex degensii KC4] gi|260864450|gb|ACX51556.1| cysteinyl-tRNA synthetase [Ammonifex degensii KC4] Length = 474 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 263/493 (53%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL ++ F +P +RMYVCGPT Y++ H+GNAR ++VFD + R L Y G + Sbjct: 2 IEVYNTLTKRKEPFVPREPGRVRMYVCGPTTYNYIHLGNARALVVFDTIRRYLEYR-GFR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII+RA +E P A+ I + + +D ++ PR Sbjct: 61 -VFFVQNFTDIDDKIIKRAAEEKMD-PQELALKYI-----EAYFEDADQINIKRADVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++H+P+++ LI +I G AY A ++ F P YG S R++ E + G RV + Sbjct: 114 VSDHLPEIVELISILIDKGFAYAAEGDVYFAVRKFPAYGKLSGRQLSELRAGARVEPGEN 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P EP W SPWG GRPGWHIECSAM+ YLG FDIHGGG DLIFPH Sbjct: 174 KRDPLDFALWKKAKPGEPSWPSPWGEGRPGWHIECSAMALKYLGPEFDIHGGGSDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A A W+HNGF+ ++ KMSKS GN + +++E +P Sbjct: 234 HENEIAQSEAATG-RPFARYWLHNGFITVKEEKMSKSLGNVFLLRKVMEL-------YPP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----W-------PQTSTSKGIIDPAV-- 351 P +RL +L THYR P+ +T + L A LS+ W Q S G + Sbjct: 286 PAVRLFLLSTHYRSPLAYTPEYLEGAAKALSRLRSSWLFLQEAQKQAEESSGGTEQLARL 345 Query: 352 -------LSALYNDLNTVSAIQALHKLARESTKNHDLLPI---------------FNASA 389 +A+ +D NT A+ LA E +L P+ FN Sbjct: 346 DKWEQDFTAAMDDDFNTARALALFFDLAHEINSWAELRPLPPAPVLRRALLLWVSFNRVL 405 Query: 390 HIL----GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + G+ V ++ + ++ LV+ R + K +++AD IR+ L++ G +LED Sbjct: 406 GLFPERRGLPVVEQERTMVLEELVKLLVEIRQEARQRKDWATADRIRESLKNLGIVLED- 464 Query: 446 KNPDNGQRMTRWK 458 P TRW+ Sbjct: 465 -TPAG----TRWR 472 >gi|118475860|ref|YP_893011.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|187629790|sp|A0R8G1|SYC_BACAH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118415085|gb|ABK83504.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/487 (37%), Positives = 262/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIHELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|291453078|ref|ZP_06592468.1| cysteinyl-tRNA synthetase 1 [Streptomyces albus J1074] gi|291356027|gb|EFE82929.1| cysteinyl-tRNA synthetase 1 [Streptomyces albus J1074] Length = 486 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 255/471 (54%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD+L R Y + Sbjct: 23 IRLYDTSARQIRDFAPLTPGCVSIYLCGATVQSAPHIGHIRSGLNFDILRRWFAYRGYD- 81 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII++ A QE P I +N + F L CL PT++P Sbjct: 82 -VTFIRNVTDIDDKIIKKSAEQERPWWAIG-------YENERAFNNGYDALGCLPPTYEP 133 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+P+MI +++ +I GHAYEA+ + FD S P Y S + +DE + + E Sbjct: 134 RATGHVPEMIEMMRGLIERGHAYEADGNVYFDVRSFPEYLELSNQDLDELRQPSGEGET- 192 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDL+FP Sbjct: 193 GKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGLDLVFP 252 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 253 HHENEIAQAKAYG--DDFATYWVHNAWVTMAGEKMSKSLGNSVLVSEMV-------KHWR 303 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS-----------KWPQTSTSKGIIDPAVL 352 V+R + HYR I+++ + L EAE + K +T + PA Sbjct: 304 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFMQRVTEKAGETPEPATEVPPAFA 363 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEHL-- 401 A+ +DL A+ +H R+ L A +LG++ H Sbjct: 364 EAMDDDLGVPQALAVIHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPYDPHWAG 423 Query: 402 ----NKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ A++ LV+ +R K +++AD IR QL+ G ++ED Sbjct: 424 EADRGEDLHGAVDTLVRLVLDQREAARTRKDWATADAIRDQLQQSGLVIED 474 >gi|239981215|ref|ZP_04703739.1| cysteinyl-tRNA synthetase [Streptomyces albus J1074] Length = 466 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 255/471 (54%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD+L R Y + Sbjct: 3 IRLYDTSARQIRDFAPLTPGCVSIYLCGATVQSAPHIGHIRSGLNFDILRRWFAYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII++ A QE P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIKKSAEQERPWWAIG-------YENERAFNNGYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+P+MI +++ +I GHAYEA+ + FD S P Y S + +DE + + E Sbjct: 114 RATGHVPEMIEMMRGLIERGHAYEADGNVYFDVRSFPEYLELSNQDLDELRQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDL+FP Sbjct: 173 GKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGLDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAYG--DDFATYWVHNAWVTMAGEKMSKSLGNSVLVSEMV-------KHWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS-----------KWPQTSTSKGIIDPAVL 352 V+R + HYR I+++ + L EAE + K +T + PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFMQRVTEKAGETPEPATEVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEHL-- 401 A+ +DL A+ +H R+ L A +LG++ H Sbjct: 344 EAMDDDLGVPQALAVIHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPYDPHWAG 403 Query: 402 ----NKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ A++ LV+ +R K +++AD IR QL+ G ++ED Sbjct: 404 EADRGEDLHGAVDTLVRLVLDQREAARTRKDWATADAIRDQLQQSGLVIED 454 >gi|258512691|ref|YP_003186125.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479417|gb|ACV59736.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 474 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 179/477 (37%), Positives = 249/477 (52%), Gaps = 53/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YN+L K Q ++P +R Y CGPTVY F H+GNAR +VFD + R L Y E Sbjct: 3 ILLYNSLTGKKEPLQTLEPGKVRFYACGPTVYHFFHLGNARMFVVFDTIRRYLEYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDD+II+RA++ + + + +N + + +D +L T PR Sbjct: 62 -VRFVQNFTDIDDRIIQRAQE------LGISPRELAEENIRYYFEDAGKLFIRPATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++I IQ++I GHAYE N + FDTSS P YG S + ++ + G R+ + Sbjct: 115 VTECVDEIIRFIQDLIDRGHAYERNGSVYFDTSSFPEYGKLSHQSPEDMRAGYRIEVQDE 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + P E W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 175 KDDPTDFALWKAAKPGEEWWPSPWGPGRPGWHIECSVMNYLYLGEQIDIHAGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG LN+ G KMSKS GNFI +LLE + Sbjct: 235 HENEIAQSE-AHSGKTFARYWLHNGTLNINGEKMSKSTGNFIMARDLLERRD-------P 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------------------W 337 +R +L HYR P+++T + L +AE LS+ Sbjct: 287 RAVRFFLLSAHYRNPLNYTEEALDQAEQALSRIDRLIRDLDHRAEALKAMRGALDRADEV 346 Query: 338 PQTSTSKGI--IDPAVLSALYNDLNTVSAIQALH--------KLARESTKNHDLLPIFNA 387 P T + I A + A+ +D NT + A+ +L DL + Sbjct: 347 PSTRGRSDVEQIRSAFIQAMDDDFNTADGMAAIFDGVRVVNTRLEEGGVTLGDLRLYRDL 406 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + + + IE+L+ ER K + F+ AD IR QL +G +LED Sbjct: 407 FVELLGVLGIPKKEEERLEDEIERLIAERAEARKRRDFARADEIRDQLRHRGIVLED 463 >gi|299821033|ref|ZP_07052921.1| cysteine--tRNA ligase [Listeria grayi DSM 20601] gi|299816698|gb|EFI83934.1| cysteine--tRNA ligase [Listeria grayi DSM 20601] Length = 473 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 261/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL R+ F+ + + MYVCGPTVY++ HIGNARP+I FD + R L Y + Sbjct: 3 LQLFNTLTREKEVFKPLVNGKVSMYVCGPTVYNYIHIGNARPIIFFDTVRRYLTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A + ++P + K F +D +L T PR Sbjct: 62 -VNYVSNFTDVDDKLIRAAEELDLTVPE------VADKFIHAFFEDVDQLNVARATTNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I IQ ++ G+AYE+ ++ F T YG S + + + + G RV Sbjct: 115 VTENMQEIIDFIQALVDKGYAYESAGDVYFATKKFDAYGKLSHQPLQDLQHGIRVETTDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESPWG+GRPGWHIECSAM+ +LG DIH GG DLIFPH Sbjct: 175 KRDELDFTLWKAAKPGEINWESPWGKGRPGWHIECSAMAQKFLGDTIDIHAGGHDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE+EIAQS A ++ AN W+HN FLN++G KMSKS GNFIT++++L + A Sbjct: 235 HEDEIAQSE-ARTGKQFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL--------AEHA 285 Query: 305 P-VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------------- 336 P V+R ML HYR PI + L +A+ L + Sbjct: 286 PDVVRFFMLSVHYRNPISLSEDTLEDAKNSLERLRTAYQNIDYRIQHAEEDVADEETTED 345 Query: 337 WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES-----------TKNHDLLPIF 385 W + T + + + +D NT +AI H+LA+ + T + L + Sbjct: 346 WLEQLTE---LKQSFEDEMDDDFNTANAITVFHELAKRANIYLAEEDVSITVLREFLSML 402 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A++LG+++ E + IE L++ERL + F AD IR+ L SK ILED Sbjct: 403 QLFANVLGLKLETEQAFELADEEIEALIEERLKARNERNFERADEIRELLRSKHIILEDT 462 Query: 446 KNPDNGQRMTRWKQ 459 +G R R ++ Sbjct: 463 A---HGTRFKRGEE 473 >gi|254168458|ref|ZP_04875302.1| cysteinyl-tRNA synthetase [Aciduliprofundum boonei T469] gi|197622513|gb|EDY35084.1| cysteinyl-tRNA synthetase [Aciduliprofundum boonei T469] Length = 455 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 251/465 (53%), Gaps = 41/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+TL + EF + + +YVCGPT YD+AHIG+ARP I+FDV R L Y + Sbjct: 1 MKIYDTLSGEKKEFVPVHEGRVGIYVCGPTTYDYAHIGHARPAILFDVFRRFLEYMGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + NITD+DDKII +A E PI + ++++KD L P+ Sbjct: 60 -VILISNITDVDDKIINKA-NELGKDPIE-----MAHYYAREYLKDMDALRVRRANIIPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I LI+ ++ G+AYE+ ++ F +YG S RKI++ G RV Sbjct: 113 ATRHIEEIINLIKTLVDKGYAYESGGDVYFSVKKFKDYGKLSHRKIEDMVAGARVEVNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG GRPGWHIECSAMS +YLG DIHGGG DLIFPH Sbjct: 173 KRDPLDFALWKASKPGEPSWQSPWGSGRPGWHIECSAMSMNYLGPTLDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G + E KMSKS GN I + L + +PA Sbjct: 233 HENEIAQSEAATG-KPFSKYWMHVGLVRFEKEKMSKSIGNVFLIKDFL-------KKYPA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-W--------------PQTSTSKGIIDP 349 V+RL L +HYR+P DF+ + + EA LL K W P K I D Sbjct: 285 EVLRLMYLNSHYRKPYDFSEKNIEEALPLLEKIWSTYQILKNSAMQEGPSEEVEKRIEDS 344 Query: 350 --AVLSALYNDLNTVSAIQ---ALHKLARESTKNHDLLPIFN---ASAHILGIEVCKEHL 401 ++++L +D NT A++ + ARE K D L N I I ++ Sbjct: 345 RKKIIASLEDDFNTREAMKEYLSFINFARE-LKGGDALAALNFLKEMDEIFDILPRGDNE 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K + IE L+ R K K + ADYIR +LE G +ED K Sbjct: 404 GKEREL-IELLLNVRNEERKRKNYEIADYIRNELEKIGIKIEDTK 447 >gi|325686898|gb|EGD28923.1| cysteine--tRNA ligase [Streptococcus sanguinis SK72] Length = 450 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 254/472 (53%), Gaps = 39/472 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + P + K F +D T L + T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKKEGIT-PKE-----VADKYIAAFHEDVTALGVKSAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 PR + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 QHPRVIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGR 172 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSAL 355 V+R HYR+PI+FT + + +A L T G D A A Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYDQPFTGQADSAQFQAF 344 Query: 356 YN--------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKN 404 + D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 345 LDKFTAAMDEDFNAANGITVVFELAKWINSGNYTAEVKAALAELLEVFGIVFVEEVLDAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 405 ----IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 449 >gi|329298451|ref|ZP_08255787.1| cysteinyl-tRNA synthetase [Plautia stali symbiont] Length = 461 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 186/482 (38%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ E + I I MYVCG TVYD HIG+ R + FDV+ R LRY G K Sbjct: 2 LKIYNTLSRQKEELKPIHACEIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYV-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESIETLTNRMIAEMHKDFAALGILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I LI +I GHAY A+N +++FD S +YG SR+ +++ + G RV Sbjct: 114 ATRHIGEIIELIGKLIDRGHAYVADNGDVMFDVLSDKDYGVLSRQDLEQLQAGARVEVAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPAWNSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 234 HHENEVAQSTCA-HDGPYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKG--IIDPAVLSA 354 A +R ++ HYR ++ L +A L + ++T G + +A Sbjct: 286 AETVRYFLMSGHYRSQLNDGEDNLNQARAALERLYTALRHTDASATPAGGEAFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI--------EVCK 398 + +D NT A L +ARE + L A +LGI Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKSEDKAAADALAAKLRQLADVLGILQQDPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +N + IE V+ R K ++ AD R +L G I+ED G + + W+ Sbjct: 406 AQVNADEVAEIEHWVKTRANARAAKDWAQADIARDKLNELGVIVED------GPKGSSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|108706133|gb|ABF93928.1| Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] Length = 338 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/324 (46%), Positives = 209/324 (64%), Gaps = 16/324 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++N++ +K F+ + +RMYVCG T YDF+HIG+AR + FDVLYR L++ E Sbjct: 10 QLELFNSMTKKKELFEPLVEGKVRMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKFLGYE 69 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + + ++ ++S+ +F+ D +L CL PT +P Sbjct: 70 --VEYVRNFTDIDDKIIKRANEA------GETVTSLSSRFINEFLLDMAQLQCLPPTCEP 121 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T+HI +I LI I+ +G AY ++ F + P Y S S RK+D G+RV Sbjct: 122 RVTDHIEHIIELITKIMENGKAYAMEGDVYFSVDTFPEYLSLSGRKLDHNLAGSRVAVDT 181 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP W+SPWGRGRPGWHIECSAMS+HYLG VFDIHGGG DLIFP Sbjct: 182 RKRNPADFALWKAAKEGEPFWDSPWGRGRPGWHIECSAMSAHYLGHVFDIHGGGKDLIFP 241 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A E W+HNGF+N + +KMSKS+ NF TI ++++ + Sbjct: 242 HHENELAQSRAA-YPESEVKCWMHNGFVNKDDQKMSKSDKNFFTIRDIIDL-------YH 293 Query: 304 APVIRLAMLMTHYREPIDFTVQRL 327 +R ++ THYR ++ + + L Sbjct: 294 PMALRFFLMRTHYRGDVNHSDKAL 317 >gi|332532274|ref|ZP_08408155.1| cysteinyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505] gi|332038372|gb|EGI74817.1| cysteinyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 459 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 181/464 (39%), Positives = 262/464 (56%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ +F+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ + Sbjct: 2 VNIYNTLTRQKEQFKPMVEGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + SI ND +T + T+ +D L L P +P Sbjct: 61 -LKYVRNITDIDDKIIKRANENGESI--ND----LTVRMTKAMHEDFDSLNMLRPDIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+H+ ++I +++ +I GHAY A+ +++FD S+ YG+ S++ + + G+RV Sbjct: 114 VTSHMDEIIAMVKRLIEKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECS MSS +LG+ FDIHGGG DL FP Sbjct: 174 DKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSVMSSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ K N WIH G + + KMSKS NF T+ E+L +++ Sbjct: 234 HHENEIAQSCCANN-GKYVNTWIHTGMVQVNKEKMSKSLDNFFTVREVL-------KAYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKGIIDPAVL-SA 354 A +R ++ HYR ++++ + L +A L + P +G A A Sbjct: 286 AESVRYFLISGHYRSQLNYSQENLDQARSSLERIYTALRDVVPVECDLEGNEFVAKFRKA 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHD------LLPIFNASAHILGI-----EVCKEHL 401 + +D NT A+ L +LA+E K D L I + +LG+ E + Sbjct: 346 MNDDFNTPEALPVLFELAKELNRVKESDAGQAGKLAFILRSLGEVLGVAQQAPEAFLQGG 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +A IE L+ +R K +++AD R L + G ILED Sbjct: 406 QDDDEVATIEALIVKRNEARASKDWAAADEARDALNALGVILED 449 >gi|323490593|ref|ZP_08095798.1| cysteinyl-tRNA synthetase [Planococcus donghaensis MPA1U2] gi|323395685|gb|EGA88526.1| cysteinyl-tRNA synthetase [Planococcus donghaensis MPA1U2] Length = 467 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/487 (36%), Positives = 264/487 (54%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+N+L R+ EF ++ ++MYVCGPTVY++ HIGNARP+IV+D + R L+Y + Sbjct: 3 IQIFNSLSRQKEEFIPLEEGKVKMYVCGPTVYNYIHIGNARPVIVYDTVRRHLQYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + ++T L C P Sbjct: 62 -VKYVSNFTDVDDKLIKAANELGQEVPE------IAERFIAAYFENTKALGCAEADVHPL 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+H+ Q+I I +I G+AYE+ ++ + T YG S + +DE K+G RV Sbjct: 115 VTDHMAQIIEFIVALIEKGYAYESQGDVYYRTRKFDGYGKLSHQSVDELKIGARVETGDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK + P E W+SPWG+GRPGWHIECS M+ +LG DIH GG DL FPH Sbjct: 175 KEDELDFVLWKAAKPKEISWDSPWGKGRPGWHIECSVMAREHLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A+ W+HNG++N++ KMSKS NF+ +N++L + Sbjct: 235 HENEIAQSE-AFTGKPFAHYWMHNGYINIDNEKMSKSLNNFVLVNDIL-------KELDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWP----QTSTSKGI---------- 346 V+R ML HYR PI+++ Q + +A E L + + + S S + Sbjct: 287 QVLRFFMLSVHYRHPINYSQQLVEDAVAGLERLRTAYANLKHRLSASADLGDHSDTWVHK 346 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHIL 392 I A + + +D NT +AI +L L+R S + +F+ A IL Sbjct: 347 IEEIKTAFIETMDDDFNTANAISSLFDLSRLSNTYLLEKQTATSVLETFIAVFDELAGIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ ++ + + +E L+ ER+ K + F+ AD IR + K ILED Sbjct: 407 GLPFNQQ--EELLDEEVEALMAERIEARKNRDFARADEIRDLFKEKNIILED------TA 458 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 459 QGTRWKR 465 >gi|328955961|ref|YP_004373294.1| cysteinyl-tRNA synthetase [Coriobacterium glomerans PW2] gi|328456285|gb|AEB07479.1| cysteinyl-tRNA synthetase [Coriobacterium glomerans PW2] Length = 488 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/428 (41%), Positives = 234/428 (54%), Gaps = 45/428 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY++ R EF+ I+ +RMYVCGPTVYD AHIGNAR I D + R L E Sbjct: 1 MRIYSSQTRVKREFKPIEAGRVRMYVCGPTVYDDAHIGNARTFITLDAIRRWLIASGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TD+DDKII RA + S + + ++F+ R L P +PR Sbjct: 60 -VTFVQNLTDVDDKIIGRAADQGRSA------EQVAQQFAERFIDVMRRANVLDPDIRPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP MI +I+++I GHAY A N ++ F S P+YG S R IDE +G R+ E Sbjct: 113 ATREIPAMIEMIKSLIKQGHAYAAGNGDVYFSVRSDPSYGEVSGRDIDELMVGARIEENA 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWH EC+AM +LG DIHGGG DLIFP Sbjct: 173 VKRDPLDFALWKAAKPGEPMWDSPWGPGRPGWHTECAAMVHRHLGCPIDIHGGGSDLIFP 232 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENE AQ+ CC E AN W+H G L ++G KMSKS GNF T+ E+L+ Sbjct: 233 HHENECAQAECCWH--EGFANTWLHVGMLMVDGEKMSKSLGNFWTLEEVLDRHS------ 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KW--------PQTSTSKG 345 A +RL ML THYR P+DF+ +RL A+ L +W P S ++G Sbjct: 285 -AAALRLLMLQTHYRTPLDFSFERLEGAQTSLGRIVSTVGNLRWASDRASGNPDASLAQG 343 Query: 346 IIDPAVLS------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 + ++ + +D NT A+ A LA T L S C E Sbjct: 344 LARRMQIARSEFKEQMDDDFNTAGALGACFSLA---TAARSYLECAGVSVDASIALACVE 400 Query: 400 HLNKNISI 407 L ++ S+ Sbjct: 401 FLEESFSV 408 >gi|293392469|ref|ZP_06636789.1| cysteine-tRNA ligase [Serratia odorifera DSM 4582] gi|291424871|gb|EFE98080.1| cysteine-tRNA ligase [Serratia odorifera DSM 4582] Length = 461 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII RA + + +T + + D L P +PR Sbjct: 61 -LNYVRNVTDVDDKIIRRAAEN------GETCDQLTGRMLAEMHADFDALLIERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L + +I GHAY A+N +++F S +YG SR+ +D+ + G RV Sbjct: 114 ATQHIAEIIELTERLIARGHAYVASNGDVMFAIDSDADYGLLSRQDLDQLQAGARVEVDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWQSPWGAGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCA-HDGPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLGY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGI-IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + P + G + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDPLATPDGGAEFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILGI--------EVCK 398 + +D NT A AL LARE KN D+ + A +LG+ Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKNEDMAAANAMAAELRKLAKVLGLLQQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIKQRNDARKSKDWALADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|150392183|ref|YP_001322232.1| cysteinyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] gi|187629786|sp|A6TWK5|SYC_ALKMQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149952045|gb|ABR50573.1| cysteinyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] Length = 464 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 182/477 (38%), Positives = 252/477 (52%), Gaps = 60/477 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F I+ +RMY CGPTVY++ HIGN R IVFD L + L Y + Sbjct: 1 MRLYNTLTRKKEVFVPIEQGKVRMYACGPTVYNYFHIGNGRTFIVFDALRKYLVYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII++A++E S I+ + ++ KD L P+ Sbjct: 60 -VTFVQNFTDIDDKIIKKAQEEAVSAKE------ISERFIVEYFKDAATLGVDQADIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++P++I IQ ++ AYE N ++ +D S +YG S++ ++E + G R+ Sbjct: 113 VTENVPEIIAFIQELLEKNVAYEVNGDVYYDVSRFEDYGKLSKQNLEELQSGARIEVNEA 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DF+LWK + P EP WESPWG GRPGWHIECSAM+ YLG+ DIHGGG DL+FPH Sbjct: 173 KRNSLDFVLWKTAKPGEPSWESPWGSGRPGWHIECSAMAKKYLGETIDIHGGGGDLVFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C + AN WIH G+LN++ +KMSKS NF T E+ E + Sbjct: 233 HENEIAQSEACTGKT--FANYWIHVGYLNIDNKKMSKSLDNFFTPREIAE-------EYD 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQTSTSKGI 346 +R ML HYR P++F+ + L A+ L + T K Sbjct: 284 LESLRFFMLSAHYRTPVNFSRELLESAKSGLERLYNAKNHLEHILENTKVEEMKETEKEW 343 Query: 347 IDPAV-LSALYN-----DLNTVSAIQALHKLAR--------ESTKN-----HDLLPIFNA 387 ID S +N D NT I + L R E++K + +L Sbjct: 344 IDSLTHYSEEFNRVMDDDFNTADGIAVIFDLVRDMNTYITGEASKEAVKAAYGMLVELTG 403 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L E +E L+K I IE Q R+ K F+ +D IR L+ KG +LED Sbjct: 404 VLGLLRKE--EESLDKEIGRLIEARQQARI----EKNFTKSDEIRDYLKEKGIVLED 454 >gi|16759512|ref|NP_455129.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142716|ref|NP_806058.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414312|ref|YP_151387.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161615258|ref|YP_001589223.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168239036|ref|ZP_02664094.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240371|ref|ZP_02665303.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465640|ref|ZP_02699522.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442819|ref|YP_002039781.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451708|ref|YP_002044570.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734068|ref|YP_002113550.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197363232|ref|YP_002142869.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241911|ref|YP_002214492.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389934|ref|ZP_03216545.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213162267|ref|ZP_03347977.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213423442|ref|ZP_03356426.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427916|ref|ZP_03360666.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586100|ref|ZP_03367926.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213617481|ref|ZP_03372307.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647061|ref|ZP_03377114.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289823986|ref|ZP_06543585.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21264006|sp|Q8Z8P6|SYC_SALTI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216133|sp|Q5PCE2|SYC_SALPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631630|sp|A9MW31|SYC_SALPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710850|sp|B5FLP7|SYC_SALDC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558785|sp|B4TA89|SYC_SALHS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558786|sp|B4SXP2|SYC_SALNS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558787|sp|B5BCZ8|SYC_SALPK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558788|sp|B4TN59|SYC_SALSV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|25293235|pir||AC0569 cysteinyl-tRNA synthetase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501804|emb|CAD05021.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138347|gb|AAO69918.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128569|gb|AAV78075.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161364622|gb|ABX68390.1| hypothetical protein SPAB_03027 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401482|gb|ACF61704.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410012|gb|ACF70231.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709570|gb|ACF88791.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631983|gb|EDX50503.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094709|emb|CAR60239.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288172|gb|EDY27557.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936427|gb|ACH73760.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602379|gb|EDZ00925.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339820|gb|EDZ26584.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|322614796|gb|EFY11725.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618903|gb|EFY15791.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623610|gb|EFY20449.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629091|gb|EFY25870.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631812|gb|EFY28566.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637451|gb|EFY34153.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642135|gb|EFY38745.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645840|gb|EFY42361.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649781|gb|EFY46206.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653205|gb|EFY49538.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660646|gb|EFY56882.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664798|gb|EFY60991.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669149|gb|EFY65299.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670695|gb|EFY66828.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679067|gb|EFY75122.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682094|gb|EFY78119.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685076|gb|EFY81073.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193031|gb|EFZ78254.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196887|gb|EFZ82029.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203872|gb|EFZ88889.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207042|gb|EFZ91995.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214431|gb|EFZ99182.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220129|gb|EGA04593.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226317|gb|EGA10529.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230246|gb|EGA14366.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233984|gb|EGA18073.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238322|gb|EGA22380.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244009|gb|EGA28018.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246597|gb|EGA30571.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252160|gb|EGA36017.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257792|gb|EGA41471.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261192|gb|EGA44784.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264876|gb|EGA48375.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272440|gb|EGA55847.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622240|gb|EGE28585.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 461 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|194289323|ref|YP_002005230.1| cysteinyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424] gi|229558628|sp|B3R4D1|SYC_CUPTR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|193223158|emb|CAQ69163.1| cysteine tRNA synthetase [Cupriavidus taiwanensis LMG 19424] Length = 462 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 184/464 (39%), Positives = 253/464 (54%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR E Sbjct: 4 LNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+NITDIDDKII RA + + I +T++ Q +D L + P H+PR Sbjct: 63 -VTYVQNITDIDDKIIRRA------VENGETIGELTTRFIQYMHEDAAALGVIRPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ +I + G AY+A++ ++ + YG S + +++ + G RV Sbjct: 116 ATDYVPQMLDMIGKLEAKGLAYQASDGDVNYSVRKFDGYGKLSGKSLEDLRAGERVSAND 175 Query: 184 HKKNPADFILWKR---STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S P E W+S WG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKSAKASEPPESKWDSKWGAGRPGWHIECSAMSCALLGEHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI E+L + Sbjct: 236 QFPHHENEIAQSEGASG-KPFVNLWMHNGFVRINDEKMSKSLGNFFTIREVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 ++ A V+R +L HYR P++++ L +A L++ AV Sbjct: 288 AYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKDSQPGGCAVDWDEPHAKR 347 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIEVCKEH--LNKNIS 406 A+ +D NT A+ L LA E + A LG+ H L S Sbjct: 348 FAEAMGDDFNTPIAMSVLFDLASEINRTGSTAAARQLKGLAGTLGLLERDPHTFLQGGKS 407 Query: 407 I------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IEKL+ R + F+ AD IR QL G +LED Sbjct: 408 ADGPSPDEIEKLIAARKAAKAERNFAEADRIRAQLLEAGIVLED 451 >gi|238027920|ref|YP_002912151.1| cysteinyl-tRNA synthetase [Burkholderia glumae BGR1] gi|237877114|gb|ACR29447.1| Cysteinyl-tRNA synthetase [Burkholderia glumae BGR1] Length = 464 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 187/486 (38%), Positives = 262/486 (53%), Gaps = 53/486 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR M+VFDV+ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRHPGEVRMYVCGITVYDYCHVGHARMMVVFDVVQRWLRAL-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +TS+ +D L P H+ Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIGSLTSRFIAAMHEDLDALGVARPEHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ +PQM+ +I+ + +G+AY+A++ ++ + NYG S + +D+ + G RV Sbjct: 114 PRATDFVPQMLGMIETLEANGYAYQASDGDVNYAVRKFANYGRLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + P EP W+S +GRGRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKSAKPGEPADTSWDSKYGRGRPGWHIECSAMGCTLLGHHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ D A L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSEVHLDDARASLTRL-YTALKDVTPDAAPLDRDEPH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHDLLPIF------NASAHILGIEVCKEHL 401 +A+ +D NT A+ L +LA E + + P L + +L Sbjct: 345 ARRFAAAMNDDFNTALAVSVLFELAGEVNRTRE--PALARQLKQLGGLLGLLGREPRAYL 402 Query: 402 NKNISI--------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + AIE + R+ + K ++ AD IR L G LED P Sbjct: 403 QQASGAASGALEAGAIEAQIAARVAAKQAKNYAEADRIRAALLEAGVALED--KPGG--- 457 Query: 454 MTRWKQ 459 +T W++ Sbjct: 458 LTEWRR 463 >gi|270263639|ref|ZP_06191908.1| cysteinyl-tRNA synthetase [Serratia odorifera 4Rx13] gi|270042523|gb|EFA15618.1| cysteinyl-tRNA synthetase [Serratia odorifera 4Rx13] Length = 461 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII RA + ++ +T++ + D L P +PR Sbjct: 60 SLNYVRNVTDVDDKIIRRATEN------GESCDQLTARMLAEMHADFDSLLIERPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + Q +I HAY A+N +++F S P YG SR+ +D+ + G RV Sbjct: 114 ATQHIAEIIEITQRLIDRDHAYVASNGDVMFSIDSDPQYGLLSRQDLDQLQAGARVEIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWQSPWGAGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCA-HDGPYVNYWMHSGMVMIDREKMSKSLDNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARTALERLYTALRGTDANAQPAGGEAFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A AL LARE K D+ +A +LG ++ E ++ Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKGEDMAAANGLAAELRKLAKVLGLLQQEPEQFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+++R K K ++ AD R +L +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIKQRNDARKAKDWALADAARDRLNEMSIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|229917379|ref|YP_002886025.1| cysteinyl-tRNA synthetase [Exiguobacterium sp. AT1b] gi|259511833|sp|C4KZR7|SYC_EXISA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229468808|gb|ACQ70580.1| cysteinyl-tRNA synthetase [Exiguobacterium sp. AT1b] Length = 465 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 177/487 (36%), Positives = 265/487 (54%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN+L K F I P + MYVCGPTVY++ H+GNARP I FD + R L Y E Sbjct: 2 IQLYNSLTNKKEPFVPIVPGKVSMYVCGPTVYNYIHVGNARPAIAFDTVRRYLTYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A + + + +T++ + ++ DT L PR Sbjct: 61 -VKYVLNFTDVDDKIIRTANE------LGEDTETLTNRYIEAYLADTGALNVQPADVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++I I+ + G AYE+ ++ F T YG S++ I++ + G+RV Sbjct: 114 VTDTMEEIIEFIRQLETEGFAYESEGDVYFRTKKFETYGKLSQQSIEDLRAGSRVDVGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAM+ +LG DIH GG DL FPH Sbjct: 174 KEDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMAKKHLGTTIDIHAGGHDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + K AN W+HNGF+N+E KMSKS GNF+ ++E L + Sbjct: 234 HENEIAQSEACNHA-KFANYWLHNGFINIENEKMSKSLGNFLLVHEAL-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGI---------- 346 V+R ML HYR PI+++ + + +A S+ + S + G+ Sbjct: 286 MVLRFFMLSVHYRHPINYSRELIEQAANGWSRIKEAYQNIEYRLSVTAGLGEASESMERK 345 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLAREST----KNH-------DLLPIFNASAHIL 392 I + + ++ +D+NT +A+ L LARE+ +H +L +F+ +L Sbjct: 346 LESIKASFIESMDDDINTANAVTVLFDLAREANIYAKADHVAKATLEQVLSLFDELTGVL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + +E + + I++L+QER + F+ AD IR L+ + LED Sbjct: 406 GLTLAEE--KELLDAEIDQLIQERNDARAARNFARADEIRDLLKEQNIQLED------TA 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKR 464 >gi|306825734|ref|ZP_07459073.1| cysteine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432095|gb|EFM35072.1| cysteine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 447 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 178/469 (37%), Positives = 256/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMEDIIRFVTDLIEKGYAYESQGDVYFRVEKSHNYARLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGSGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T GI+D L Sbjct: 286 -IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGIVDAGELQDFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 + + D N+ + I + ++A+ ++ N+D + A + GI +E L+ + Sbjct: 345 FVAVMDEDFNSANGITVVFEMAKWINSGNYDASVKKSLAAMLEVFGIVFVEEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|120602598|ref|YP_966998.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris DP4] gi|187629811|sp|A1VDQ5|SYC_DESVV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120562827|gb|ABM28571.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris DP4] Length = 485 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 186/492 (37%), Positives = 255/492 (51%), Gaps = 69/492 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ F P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ RN TD+DDKII+RA +E + + K F +D RL L +P+ Sbjct: 60 -VTFARNFTDVDDKIIKRANEEGLTS------QQVAEKYIDTFYEDMDRLNVLRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L + +I G AY + ++ F S P YG S R ID+ + G RV Sbjct: 113 ATGHILEMIALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS ++ DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKSAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ+ A ++K W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 233 HHENEIAQTEAA--LDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILE-------GY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGI 346 V+R +L HYR PIDFT + EAE L SKW T + Sbjct: 284 LPEVLRFFLLTKHYRSPIDFTFDSMDEAEKSLKRIYEALSLARTERGRSKWSATPLPADV 343 Query: 347 ------IDPAVLSALYNDLNTVSA-------IQALHKL-----ARESTKNHDLLPIFNA- 387 +D A AL +DLNT +A I+ +++L R+S + LL + Sbjct: 344 TAEFDTLDRAFDEALEDDLNTAAALGHVFGTIRLVNRLLEDKNLRKSAETLALLERLDGL 403 Query: 388 ---------------SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 A + ++ C+ + ++ L++ER + K F+ AD IR Sbjct: 404 VAKWMKVLGVFGREPEAFLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIR 463 Query: 433 KQLESKGFILED 444 +L + G + D Sbjct: 464 DELAALGIEVRD 475 >gi|50122074|ref|YP_051241.1| cysteinyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043] gi|61216191|sp|Q6D2E4|SYC_ERWCT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49612600|emb|CAG76050.1| cysteinyl-RNA synthetase [Pectobacterium atrosepticum SCRI1043] Length = 461 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 181/482 (37%), Positives = 255/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHADQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA I + +T++ + D L L P +PR Sbjct: 60 SLKYVRNITDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A+N +++F + YG SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLITRRHAYVASNGDVMFSVDTASGYGVLSRQDLDQLRAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSCCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGI-IDPAVLSA 354 +R ++ HYR ++++ L +A L + P G + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALERLYIALRGTDPSVEAHGGDEFEARFHDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L +ARE + + L + +LG +E E +N Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDVQAANQLASTLRKLSGVLGLLEQDPEQFLQNG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVNDDEVKEIEALIQQRKDARATKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|282897582|ref|ZP_06305582.1| Cysteinyl-tRNA synthetase, class Ia [Raphidiopsis brookii D9] gi|281197505|gb|EFA72401.1| Cysteinyl-tRNA synthetase, class Ia [Raphidiopsis brookii D9] Length = 488 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 191/506 (37%), Positives = 269/506 (53%), Gaps = 73/506 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R EFQ ++P +RMY CG TVYD+ H+G+AR IV+DV+ R L + G + Sbjct: 3 LSIYNTLTRCQEEFQPVEPGQVRMYYCGVTVYDYCHLGHARACIVWDVVRRYLEFI-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RAR+E N + + + Q + +D RL PR Sbjct: 62 -VRYIQNFTDIDDKILNRARKE------NSTMETVAERYIQAYFEDMGRLGVREADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LIQ++ + G+AY A+ ++ + + YG S RK+ + + G RV Sbjct: 115 ATHTMNGIKKLIQDLEVRGYAYAADGDVYYAVRNFNEYGKLSGRKLADLQAGASERVNIE 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF LWK + P EP WESPWG+GRPGWHIECSAM LG DIH GG Sbjct: 175 DPEYQKKKDPFDFALWKAAKPCEPAWESPWGKGRPGWHIECSAMVRDRLGDTIDIHAGGA 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + AN W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 235 DLIFPHHENEIAQSEAVTG-KPLANYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLS--------KWPQTST 342 R +RL +LM YR+P+DFT + + A E LL W ST Sbjct: 289 -RGVDPMALRLFVLMAQYRKPLDFTEEAILAATNGWHTLKEGLLFGYHHGGKLDWDLQST 347 Query: 343 SKGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-------------- 382 ++ I D +A+ +D N + + ++A+E K +++ Sbjct: 348 NE-ITDIDQVEIEKFTTAVDDDFNFPGGLVVIFEIAKELRKEGNIIVHEGKTQTPSAELL 406 Query: 383 ---PIFNASAHILGIEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQ 434 +LG+ + K K I + IE LVQ+R K K F+ +D IR++ Sbjct: 407 TKWQTLVTLTRVLGL-IAKPEDQKTIDESLSDKVIENLVQKRQEARKAKDFAESDRIREE 465 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L++KG L D K TRW+++ Sbjct: 466 LKAKGITLIDSKEG------TRWQRE 485 >gi|46579990|ref|YP_010798.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|61216247|sp|Q72BQ5|SYC_DESVH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|46449406|gb|AAS96057.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|311234011|gb|ADP86865.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris RCH1] Length = 485 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 186/492 (37%), Positives = 255/492 (51%), Gaps = 69/492 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ F P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ RN TD+DDKII+RA +E + + K F +D RL L +P+ Sbjct: 60 -VTFARNFTDVDDKIIKRANEEGLTS------QQVAEKYIDTFYEDMDRLNVLRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L + +I G AY + ++ F S P YG S R ID+ + G RV Sbjct: 113 ATGHILEMIALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS ++ DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKAAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ+ A ++K W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 233 HHENEIAQTEAA--LDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILE-------GY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGI 346 V+R +L HYR PIDFT + EAE L SKW T + Sbjct: 284 LPEVLRFFLLTKHYRSPIDFTFDSMDEAEKSLKRIYEALSLARTERSRSKWSATPLPADV 343 Query: 347 ------IDPAVLSALYNDLNTVSA-------IQALHKL-----ARESTKNHDLLPIFNA- 387 +D A AL +DLNT +A I+ +++L R+S + LL + Sbjct: 344 TAEFDTLDRAFDEALEDDLNTAAALGHVFGTIRLVNRLLEDKNLRKSAETLALLERLDGL 403 Query: 388 ---------------SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 A + ++ C+ + ++ L++ER + K F+ AD IR Sbjct: 404 VAKWMKVLGVFGREPEAFLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIR 463 Query: 433 KQLESKGFILED 444 +L + G + D Sbjct: 464 DELAALGIEVRD 475 >gi|327468352|gb|EGF13837.1| cysteine--tRNA ligase [Streptococcus sanguinis SK330] Length = 447 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/468 (37%), Positives = 251/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +A L T G D A L Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ D+ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTSDIKAAFAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQVARGNRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|293364920|ref|ZP_06611637.1| cysteine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307703173|ref|ZP_07640119.1| cysteinyl-tRNA synthetase [Streptococcus oralis ATCC 35037] gi|291316370|gb|EFE56806.1| cysteine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307623248|gb|EFO02239.1| cysteinyl-tRNA synthetase [Streptococcus oralis ATCC 35037] Length = 447 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 256/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVSFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P+ + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PLE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + +++ G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVTDLVEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 -LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDAQELQAFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ D N+ + I + ++A+ ++ N+D + A + GI +E L+ + Sbjct: 345 FVAAMDEDFNSANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|109898207|ref|YP_661462.1| cysteinyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] gi|109700488|gb|ABG40408.1| cysteinyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] Length = 464 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 158/381 (41%), Positives = 225/381 (59%), Gaps = 27/381 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F + S + +YVCG TVYD +H+G+AR + FD++ R LR+ E Sbjct: 2 LHIYNTLTRQKELFTPLHESKVGLYVCGITVYDLSHMGHARTYLSFDLMVRYLRHKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + S +T + D + LAP +PR Sbjct: 61 -VNYVRNITDIDDKIIQRANEN------GETTSELTERTIAMMHDDFAAIGLLAPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+P++I +I+ +I GHAY+A + +++FD SS +YG S++ +D+ MG+RV Sbjct: 114 VTTHMPEIIAIIERLIQRGHAYQAKSGDVLFDVSSYADYGKLSKQDLDQLNMGSRVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DLIFP Sbjct: 174 DKDDPMDFVLWKTAKPGEPSWQSPWGDGRPGWHIECSAMNQKHLGEHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H G + ++ KMSKS GNF T+ ++L+ Sbjct: 234 HHENEVAQSCCA-YDTPYVNYWVHAGMVQVDSEKMSKSLGNFFTLRDVLQQHD------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAVLSALY------ 356 A +R ++ HYR + ++ +T+A L + + K + SA Y Sbjct: 286 AETLRYFLMSAHYRSQLSYSQSNITQARSALERLYTSLRDVKANTQVDMHSADYLTRFDK 345 Query: 357 ---NDLNTVSAIQALHKLARE 374 +D NT A+ L +A+E Sbjct: 346 AMDDDFNTPEAMAVLFDVAKE 366 >gi|300857267|ref|YP_003782251.1| cysteinyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] gi|300437382|gb|ADK17149.1| cysteinyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] Length = 465 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 267/487 (54%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF +D ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKIFNTMTREKEEFVPLDSDEVKMYVCGPTVYNFFHIGNARTFVVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A+ EH ++ + K +++ KD L T PR Sbjct: 60 -VRFVQNFTDIDDKMIKKAQDEHITV------KELGDKFIKEYYKDADALHIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I I ++I +AYE + ++ F T NYG S + ID+ + G R+ Sbjct: 113 ATLYITKIIEFIGDLIDRDYAYEIDGDVYFSTKKFSNYGKLSGQNIDDLRAGARIDVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ LG+ DIH GG DL+FPH Sbjct: 173 KKDPMDFAVWKGQKPGEPAWESPWGMGRPGWHIECSCMAHDLLGETIDIHAGGSDLMFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R KT A W+H+ F+N+ +KMSKS NF T+ E+LE + Sbjct: 233 HENEIAQS--EGRTGKTFARYWMHSAFVNVNNQKMSKSLNNFFTVREILE-------KYE 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIID-------------- 348 VIR+ ML HYR I+F+++ L + L + + T+ + ++D Sbjct: 284 PDVIRMFMLSGHYRTQINFSMELLDSTKSALDRLYNSITNLENLLDNKEDIPISENEKEY 343 Query: 349 --------PAVLSALYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASAHI---LG- 393 + + +D NT AI + L ++ S + + S ++ LG Sbjct: 344 RNKLGKYKQRYIEKMDDDFNTADAISVIFDLVKDINVSINKDSSVEVIRDSLNLIRELGA 403 Query: 394 -IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + + ++ +I IE L+++R I K ++ +D IR L+++G +LED P+ Sbjct: 404 PLGILQQSKRGSIEKEIEALIEKRQIARSEKNWALSDKIRDDLKAQGIVLED--TPEG-- 459 Query: 453 RMTRWKQ 459 RWK+ Sbjct: 460 --VRWKR 464 >gi|157962505|ref|YP_001502539.1| cysteinyl-tRNA synthetase [Shewanella pealeana ATCC 700345] gi|187631637|sp|A8H617|SYC_SHEPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157847505|gb|ABV88004.1| cysteinyl-tRNA synthetase [Shewanella pealeana ATCC 700345] Length = 459 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 257/483 (53%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ +F + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + S +T + + +D L P ++PR Sbjct: 61 -VNFQRNITDVDDKIIKRANENKESC------DSLTERLIAEMHRDFDALNMARPDNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I HAY A+N +++F SS P YG S + +++ + G RV + Sbjct: 114 ATLHMPEIIEMVEKLIEREHAYVASNGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------ 351 A +R +L HYR ++++ L +A+ S + T+ +D V Sbjct: 286 ATTVRYFLLSGHYRSQLNYSEDNLKQAK---SGLERIYTALKDLDLTVEAAPAEEFVAKF 342 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 SA+ +D NT A L + RE K L A +LGI Sbjct: 343 KSAMDDDFNTPEAYSVLFDMVREINRLKATDMAKASALGVALKQLADVLGILGQDVDTFF 402 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 K N + IE L+ ER K + +AD R L + G ILED G T W Sbjct: 403 KGEGNDDEVAEIEALIVERNRARAEKDWPAADVARDGLNALGVILED------GPEGTTW 456 Query: 458 KQK 460 ++K Sbjct: 457 RKK 459 >gi|325697466|gb|EGD39352.1| cysteine--tRNA ligase [Streptococcus sanguinis SK160] Length = 450 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/472 (37%), Positives = 253/472 (53%), Gaps = 39/472 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + P + K F +D + L T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 PR + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 QHPRVIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGR 172 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL--- 352 V+R HYR+PI+FT + + +A L T G D A L Sbjct: 291 ------GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVF 344 Query: 353 -----SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404 +A+ D N + I + +LA+ D+ F + GI +E L+ + Sbjct: 345 LDKFTAAMDEDFNAANGITVVFELAKWINSGNYTADIKAAFAELLEVFGIVFVEEVLDAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 405 ----IERLIEERQVARGNRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 449 >gi|198283982|ref|YP_002220303.1| cysteinyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665072|ref|YP_002426619.1| cysteinyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248503|gb|ACH84096.1| cysteinyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517285|gb|ACK77871.1| cysteinyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 462 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 187/484 (38%), Positives = 263/484 (54%), Gaps = 58/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++TL R T + + P+++ +YVCG TVYDF H+G+AR M+ FD + R LR E Sbjct: 7 VTLFDTLRRSKTPLEVLRPNHVGLYVCGMTVYDFCHLGHARVMVTFDTVVRYLRERGYE- 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + ++I +T++ +D L C P +PR Sbjct: 66 -VTYVRNITDIDDKIIRRA------LECGESIQSLTARFIDAMHEDEAALLCRRPDLEPR 118 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ M LI +I GHAY AN ++ + S P YG S + IDE G RV Sbjct: 119 ATEHVGAMQTLIGELIHRGHAYVAANGDVYYAVRSFPEYGRLSGKSIDELTSGARVEVGE 178 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W S WG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 179 EKRDPLDFALWKAAKPGEPSWPSAWGEGRPGWHIECSAMSADALGCAFDIHGGGADLQFP 238 Query: 244 HHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 HHENEIAQS CA A+ W+HNGF+ + KMSKS NF T+ ELL ++ G Sbjct: 239 HHENEIAQSQGAGCA-----FAHYWMHNGFVRINDEKMSKSLNNFFTVRELL--PRYSGE 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 V+R +L +HYR P+++ L +A L++ + +G+ P ++ Sbjct: 292 -----VLRFFILSSHYRSPLNYAEDALEQARAGLTRL--YTALRGMPRPKIVAEMGSEWR 344 Query: 353 ----SALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI-----E 395 +A+ +D +T +A+ L LARE + D L + A +LG+ E Sbjct: 345 ERFHAAMSDDFHTPAALAVLFDLARELNRLRDEGSEVAAPLATLLRELAGVLGLLQQDAE 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++S I+ + R + + F+ AD IR++L + G ILED G T Sbjct: 405 GFLRGHDADVSW-IDGRIAARAAARQARDFAGADAIRQELTAAGVILED------GPGGT 457 Query: 456 RWKQ 459 W++ Sbjct: 458 TWRR 461 >gi|225848506|ref|YP_002728669.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644318|gb|ACN99368.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] Length = 487 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 179/494 (36%), Positives = 257/494 (52%), Gaps = 73/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K +F I P +++Y CG TVYD+ H+G+ R +IVFD++ R LRY Sbjct: 3 LKIYNTLTGKKEDFAPIKPPQVKIYTCGVTVYDYNHVGHGRSLIVFDMIRRYLRYL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA+ E +P ++I+ K +++ D + +PR Sbjct: 61 NVIFVRNFTDVDDKIINRAKNE--CVPF----TVISDKYIKEYFDDAEKFRIEPADIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP +I IQ +I G+AYE + ++ F +YG S+R IDE G R+ Sbjct: 115 VTTHIPDIIKFIQELIDKGYAYEVDGDVYFSVRKFKDYGKLSKRSIDELLAGARIEPGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + EP WESPWG+GRPGWH EC AM +LG+ DIHGGGLDL FPH Sbjct: 175 KKDPLDFALWKSAKAGEPYWESPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A WIHNG + + G+KMSKS GN++T+ E+ + Sbjct: 235 HENEIAQAESLTG-KPFARYWIHNGLVTVNGQKMSKSLGNYVTLKEIYS-------KYEP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI-------------LLSKWPQTS-------TSK 344 ++RL +L HYR P+DF+ ++ E + +L K P T Sbjct: 287 DILRLLVLSVHYRSPLDFSWDKMEETKKAYERLKNAIQEYEILQKLPTDENFEEDLYTEI 346 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLAR--------------------ESTKN------ 378 SA+ +D NT A+ +L L R +S K Sbjct: 347 QKAQSGFYSAMSDDFNTPEALASLFGLVRQMNILKDKAIKQGGISKKALQSYKEAADTLH 406 Query: 379 ---HDLLPIFNA-----SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 D+ +F++ + +E +E L++++ I L++ R K K+FS AD Sbjct: 407 NICRDIFGLFDSLQPCVKTEEIKVEKQEEKLDEDL---INILIEVRDKARKEKQFSIADT 463 Query: 431 IRKQLESKGFILED 444 IR +L KG ++ED Sbjct: 464 IRDKLAEKGIVIED 477 >gi|218290036|ref|ZP_03494203.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218239870|gb|EED07058.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 474 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 179/477 (37%), Positives = 248/477 (51%), Gaps = 53/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YN+L K Q ++P +R Y CGPTVY F H+GNAR +VFD + R L Y E Sbjct: 3 IVLYNSLTGKKEPLQTLEPGKVRFYACGPTVYHFFHLGNARMFVVFDTIRRYLEYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDD+II+RA++ + + + +N + + +D +L T PR Sbjct: 62 -VLFVQNFTDIDDRIIQRAQE------LGISPRELAEENIRYYFEDAGKLFIRPATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I IQ++I GHAYE N + FDTSS P YG S + ++ + G R+ + Sbjct: 115 VTECVDDIIRFIQDLIDRGHAYERNGSVYFDTSSFPEYGKLSHQSPEDMRAGYRIEVQDE 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + P E W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 175 KDDPTDFALWKAAKPGEEWWPSPWGPGRPGWHIECSVMNYLYLGEQIDIHAGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG LN+ G KMSKS GNFI +LLE + Sbjct: 235 HENEIAQSE-AHSGKTFARYWLHNGTLNINGEKMSKSTGNFIMARDLLERRD-------P 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------------------W 337 +R +L HYR P+++T + L +AE LS+ Sbjct: 287 RAVRFFLLSAHYRNPLNYTEEALDQAEQALSRIDRLIRDLDHRAEALKAMRGALDRADEV 346 Query: 338 PQTSTSKGI--IDPAVLSALYNDLNTVSAIQALH--------KLARESTKNHDLLPIFNA 387 P T + I A + A+ +D NT + A+ +L DL + Sbjct: 347 PSTQGRSDVEQIRSAFIQAMDDDFNTADGMAAIFDGVRLVNTRLEEGGVTLGDLHLYRDL 406 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + + + IE+L+ ER K + F+ AD IR QL +G +LED Sbjct: 407 FVELLGVLGIPKKEEERLEDEIERLIAERAEARKRRDFARADEIRDQLRHRGIVLED 463 >gi|306829040|ref|ZP_07462231.1| cysteine--tRNA ligase [Streptococcus mitis ATCC 6249] gi|304428845|gb|EFM31934.1| cysteine--tRNA ligase [Streptococcus mitis ATCC 6249] Length = 447 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 179/469 (38%), Positives = 255/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ S ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDSKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P I K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----IADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMEDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIID--------PA 350 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 -LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDIQELQDFKDK 344 Query: 351 VLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + I + ++A+ ++ N+D + A + GI +E L+ Sbjct: 345 FVAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IETLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|242240078|ref|YP_002988259.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech703] gi|242132135|gb|ACS86437.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech703] Length = 461 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 177/487 (36%), Positives = 263/487 (54%), Gaps = 58/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FD++ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDMVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I+ +T + + D L L+P +PR Sbjct: 61 -VKYVRNITDIDDKIIKRAAEN------GETIAQLTDRMIAEMHADFASLNILSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I HAY A N +++F + P YG SR+ +++ K G RV Sbjct: 114 ATHHIAEIIELVEKLIARRHAYVAENGDVMFSVDTAPGYGVLSRQDLEQLKAGARVEIAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKLNEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGEYV-NYWMHTGMVMVDREKMSKSLNNFFTVRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKG--IIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + ++++ G + +A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDESASPAGGEAFEARFCTA 345 Query: 355 LYNDLNTVSAIQALHKLARE------------------STKNHDLLPIFNASAHIL---G 393 + +D NT A L +AR+ + +L + + G Sbjct: 346 MDDDFNTPEAYSVLFDIARDINRLKAEDAAAANALAAELRRLAGVLGLLEQDPELFLQSG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + C + + + I+ L+++R + K +++AD R +L G +LED G + Sbjct: 406 AQPCDDEVQE-----IDALIKQRNDARQSKDWAAADAARNRLTDMGIVLED------GPQ 454 Query: 454 MTRWKQK 460 T W++K Sbjct: 455 GTIWRRK 461 >gi|325829816|ref|ZP_08163274.1| cysteine--tRNA ligase [Eggerthella sp. HGA1] gi|325487983|gb|EGC90420.1| cysteine--tRNA ligase [Eggerthella sp. HGA1] Length = 501 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 188/517 (36%), Positives = 265/517 (51%), Gaps = 86/517 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT R +F+ ++ + MYVCGPTVY++ HIGNAR I FDV+ R L + + Sbjct: 2 IRLYNTKTRTKVDFETLERGKVGMYVCGPTVYNYIHIGNARTFISFDVIRRYLMWRGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TD+DDKII ++ +E S + + ++ T+ F++D L P +P+ Sbjct: 61 -VTFVQNVTDVDDKIIGKSLEEGRSA------AEVAAEYTEAFIEDMRAAGVLDPDIRPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT IP MI LIQ +I GHAY+A+ ++ F+ S P YG S R +DE + G R Sbjct: 114 ATEEIPAMIELIQELIDGGHAYDADGDVYFNVRSFPAYGELSGRNVDEMESGHRELRADG 173 Query: 182 ---KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FDIHGGG Sbjct: 174 KGVEDRKRDPLDFALWKAAKPGEPAWESPWGMGRPGWHIECSAMSRKYLGLPFDIHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE AQS A AN W+H G L + KMSKS GNF + ++L+ Sbjct: 234 DLVFPHHENERAQSEAACGC-TFANYWMHGGMLQINSEKMSKSLGNFKLLRDVLKVTD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 V+R ML THYR P+DF+ +RL EA L + W Q ++ I P Sbjct: 291 -----PKVLRFLMLQTHYRSPLDFSDERLAEAGAALCRIENAVKNLDW-QLQNAQDIPSP 344 Query: 350 ---------------AVLSALYNDLNTVSAIQALHKL--------ARESTKNHDLLPIFN 386 A + A+ +D NT A+ + A ++ D+ P+ + Sbjct: 345 LDTRELMKRTKEAKLAFILAMDDDFNTCKALGEVFDFVAAVNAQTADKTISLSDVPPVRD 404 Query: 387 ASA------HILGIEV----------------------CKEHLNKNISIAIEKLVQERLI 418 A + GI+V + + + A++ L+ R Sbjct: 405 ARGVIVELMGVFGIDVEAASASCAAGGYPPEVVGLAADIAGYEGADAAEAVDALLAARAD 464 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 K +S AD +R L GF++ED G R+T Sbjct: 465 ARAAKDWSRADAVRDGLCGLGFVIEDTP---QGARVT 498 >gi|251771305|gb|EES51886.1| cysteinyl-tRNA synthetase [Leptospirillum ferrodiazotrophum] Length = 485 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 187/499 (37%), Positives = 256/499 (51%), Gaps = 58/499 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I +YN+L RK+ F P ++MYVCG TVYD H+G+AR +VFD L+RL Sbjct: 1 MPPSISLYNSLSRKVEPFIPQTPGEVKMYVCGVTVYDDCHLGHARSQMVFDTLHRLF-LE 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 G + V YVRNITDIDDKII +A + +PI + IT + F +D RL L+P Sbjct: 60 TGHR-VRYVRNITDIDDKIIRKAAEA--GVPIEN----ITRTFIESFSRDMGRLGILSPE 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT + M+ LI ++ G AY + ++ F S YG S + +++ + G R+ Sbjct: 113 REPRATEFLDSMVALIDRLLSLGSAYRSGGDVYFRVRSFSGYGGLSHQILEDLRSGARIE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP + +P+G GRPGWHIECSAMS HYLG D+HGGG+DL Sbjct: 173 PGEEKEDPLDFVLWKGAKPGEPSYPAPFGPGRPGWHIECSAMSLHYLGPTLDLHGGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG-- 298 +FPHHENE AQS A + A W+HNGF+ KMSKS GN I E F Sbjct: 233 LFPHHENERAQSEAATG-QTFARTWMHNGFVTTSQEKMSKSLGNTRRIRAFFEDSPFPEA 291 Query: 299 -GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---------------EILLSKWPQTST 342 R W +R L THYR P+DFT L A E L ++ P+ Sbjct: 292 VTREW----LRYFFLGTHYRSPVDFTEGGLASAKNALDGLHQCRALLLECLSAEAPEGDP 347 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHK--------LARESTKNHDLLP-----IFNASA 389 G + + + AL +DL+T A+ LH LA + + + P +F+ + Sbjct: 348 IAGPLLSSFMEALSSDLDTPVALSVLHGAKSRINPWLASGGSGSPPVDPREVRALFSLAG 407 Query: 390 HILGIEVCKEH-----------LNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLES 437 LGI + +S IE+LV R K + F AD +R QL + Sbjct: 408 RTLGILTTDPSSWIGGEGRDGGGGEGLSPEEIERLVHLREEARKARDFKQADALRDQLRA 467 Query: 438 KGFILEDYKNPDNGQRMTR 456 G +LED P R+ R Sbjct: 468 AGVVLED--QPGGPPRIRR 484 >gi|18977396|ref|NP_578753.1| cysteinyl-tRNA synthetase [Pyrococcus furiosus DSM 3638] gi|18893083|gb|AAL81148.1| cysteinyl-tRNA synthetase [Pyrococcus furiosus DSM 3638] Length = 483 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 189/488 (38%), Positives = 259/488 (53%), Gaps = 66/488 (13%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +K+YNTL ++ EF+ + ++MYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 5 KNMLKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEH-- 62 Query: 62 GEKCVTYVRNITDIDDKIIERARQ--EHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 V V N TDIDDKII+RAR+ E P I I F++D L Sbjct: 63 KGYTVLMVMNFTDIDDKIIKRARETGEDPKELAERFIKI--------FLEDMEALKVKPA 114 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 PR T+HI +I I + G+AYE ++ I F+ P YG S KI++ + G RV Sbjct: 115 DIYPRVTDHIDDIIEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARV 174 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG D Sbjct: 175 EPGEGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGND 234 Query: 240 LIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 LIFPHHENEIAQS C + W+H GF+ ++G KMSKS GNF+TI ELL Sbjct: 235 LIFPHHENEIAQSEACFGH--EWVKYWLHTGFVMVKGEKMSKSLGNFVTIRELL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKG 345 + + VIR +L HYR P+++T + L A+ L + T S + G Sbjct: 287 -KRYEPEVIRFFVLQKHYRSPLEYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWG 345 Query: 346 IID-----------PAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHD-----LL 382 ++ A+ +D NT A++A+ ++A E+ K + L Sbjct: 346 ELEFKTYEIIREGKRKFYEAMDDDFNTAEALKAVFEVANAINKYLTEANKPKESILRKAL 405 Query: 383 PIFNASAHILGIEVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLE 436 F + + G V +++ + IE LV+ R L K K++ AD IR++L+ Sbjct: 406 EFFKIVSEVFG--VFEDYFREETKEREESEKLIELLVEVRKQLRKEKRYELADMIREELK 463 Query: 437 SKGFILED 444 G LED Sbjct: 464 KLGIQLED 471 >gi|331003582|ref|ZP_08327079.1| cysteinyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412423|gb|EGG91814.1| cysteinyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167] Length = 469 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 194/493 (39%), Positives = 260/493 (52%), Gaps = 63/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL RK EF I+ ++MYVCGPTVY+ HIGNARPMI FD + R Y + Sbjct: 1 MKIFNTLSRKKEEFVPIEEGKVKMYVCGPTVYNLIHIGNARPMIFFDTVRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E S+I+++ + KD + L T P Sbjct: 60 -VNYVSNFTDVDDKIINKAIEEGVEA------SVISTRYIDECKKDMEAMNVLPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M +I ++I GHAY A + + F S +YG S + IDE + G R V Sbjct: 113 ATEEIDGMEEMIGSLIEKGHAYVAKDGTVYFRVKSFEDYGKLSHKNIDELQSGFREIKVK 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ DF+LWK EP W+SPW +GRPGWHIECS MS YLG DIHGGG DL Sbjct: 173 GEEDKEDSNDFVLWKPKKDGEPYWDSPWSKGRPGWHIECSVMSKKYLGDQIDIHGGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + AN W+HN FLN++ +KMSKS GNF T+ ++ E Sbjct: 233 IFPHHENEIAQSESASG-KSFANYWMHNAFLNIDNKKMSKSLGNFFTVRDISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA-----EILLS-----KWPQTSTSKGIIDPA 350 + V+R ML HYR P++F+ + L EA E +L+ K Q + I A Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAE-LMEASKNSLERILTGVENIKDVQKRNNADAITDA 343 Query: 351 VLS--------------ALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFN 386 LS A+ +D NT AI A+ +L + S + + LL I Sbjct: 344 ELSNLEIAKVLKDKFVIAMDDDFNTADAITAIFELIKLSNTSLNEKSTVEYANGLLNIIL 403 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 LGI E + + IE L+++R K K F+ AD IR +L G +LED + Sbjct: 404 PLCDTLGI--ITERKVEILDSEIEDLIEQRTSARKNKDFALADKIRNELLEMGIVLEDTR 461 Query: 447 NPDNGQRMTRWKQ 459 +WK+ Sbjct: 462 EG------VKWKR 468 >gi|222111282|ref|YP_002553546.1| cysteinyl-tRNA synthetase [Acidovorax ebreus TPSY] gi|254781677|sp|B9MAU5|SYC_DIAST RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221730726|gb|ACM33546.1| cysteinyl-tRNA synthetase [Acidovorax ebreus TPSY] Length = 458 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 165/391 (42%), Positives = 227/391 (58%), Gaps = 36/391 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + EF I+P ++RMYVCG TVYD H+G+AR MI FDV+ R LR Sbjct: 3 LRIYNTLSRALEEFSPIEPGHVRMYVCGMTVYDLCHLGHARSMIAFDVVQRWLRA--SGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + +D L PTH+PR Sbjct: 61 AVTYVRNITDIDDKIIKRAVEN------GETIRSLTDRMIDALHQDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV + Sbjct: 115 ATAYVPQMLDMIGTLQGKGLAYQAGNGDVNYAVRKFPGYGKLSGKSLDELNAGERVAVQD 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + P EP W SP+G GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKHDPLDFVLWKSAKPEEPADVKWRSPFGEGRPGWHIECSAMGCALLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A +W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPFARLWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A +R ++ +HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 EYDAETVRFFVVRSHYRSPLNYSNVHLDDARAALKR---LYTALSLVAPAPVEVDWAEGY 343 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKN 378 +A+ D T A+ L LA E ++ Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFDLAGEVNRS 374 >gi|324996026|gb|EGC27937.1| cysteine--tRNA ligase [Streptococcus sanguinis SK678] Length = 447 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 179/468 (38%), Positives = 253/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PKE-----VADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +A L T G D A L Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 SA+ D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TSAMDEDFNAANGITVVFELAKWINSGNYTAQVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQMARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|156974130|ref|YP_001445037.1| cysteinyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116] gi|156525724|gb|ABU70810.1| hypothetical protein VIBHAR_01842 [Vibrio harveyi ATCC BAA-1116] Length = 460 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 182/483 (37%), Positives = 263/483 (54%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +++ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFNEYGKLSKQDLEQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLNAAPAGGEEYVSRYT 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCK 398 +A+ +D NT A L +ARE K +L + A ++GI K Sbjct: 344 AAMNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLK 403 Query: 399 EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +A IE L++ R K +++AD R +L G +LED G T W Sbjct: 404 GDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTW 457 Query: 458 KQK 460 ++K Sbjct: 458 RRK 460 >gi|253689302|ref|YP_003018492.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259511839|sp|C6DAX2|SYC_PECCP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|251755880|gb|ACT13956.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 461 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 179/482 (37%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + + +T++ + D L L P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRAAEN------GETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A+N +++F + P YG SR+ +D+ + G RV Sbjct: 114 ATHHITDIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGVLSRQDLDQLQAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSSCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGI-IDPAVLSA 354 +R ++ HYR ++++ L +A L + P + G + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALERLYTALRGTDPDAAAQGGDEFEGRFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L +ARE + + L + +LG +E E +N Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAQAANQLASALRKLSGVLGLLEQDPEQFLQNG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVDNDEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|269837621|ref|YP_003319849.1| cysteinyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786884|gb|ACZ39027.1| cysteinyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] Length = 468 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 183/474 (38%), Positives = 247/474 (52%), Gaps = 52/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ +T + F+ I+P +RMYVCGPTVYD AHIG+A IVFDVL R L Y G + Sbjct: 3 LRLTDTRTGEQRPFEPIEPGVVRMYVCGPTVYDDAHIGHAMSAIVFDVLRRYLEYS-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + + +N TD+DDKII+RA + + + + +++DT RL T PR Sbjct: 62 VI-HAQNFTDVDDKIIQRA------ATLGIEPRELAERLIEDWLRDTARLNVKPATIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +I +I+ +I GHAY ++ F S P YG S R +DE G R+ Sbjct: 115 ATQEIDTIIEMIKGLIAEGHAYAVEGGDVFFRVDSFPGYGKLSHRSLDEMMAGARIEVDP 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK + P EP W+SPWG GRPGWHIECSAM +LG DIHGGG DLIFP Sbjct: 175 RKENPMDFALWKGAKPGEPAWDSPWGPGRPGWHIECSAMIYRHLGDRIDIHGGGADLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS E A W+HNG L L G KMSKS GN ITI ELLE Sbjct: 235 HHENEIAQSEAFTDQEPLARFWVHNGLLQLGGEKMSKSLGNLITIRELLERGD------- 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 R +L +HYR P+ F+ + + A L++ S +G DPA Sbjct: 288 GEAFRFLVLSSHYRSPLTFSDEAMDSARRGLARL--QSAVRG-FDPATAPATAPDHALAR 344 Query: 353 ----------SALYNDLNTVSAIQALHKLARESTKNHDLL----------PIFNASAHIL 392 +A+ +DLNT A+ L +LAR + D + A +L Sbjct: 345 IADETRAEFRAAMDDDLNTPVALSHLFELARAINRERDAGAPAAAVAYAQSVLKELAGVL 404 Query: 393 G--IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G +E + ++ I ++ L++ R L K + + AD IR +L G +ED Sbjct: 405 GLTLETTTQRTDEAIEPFVDLLLEVRAELRKQRLWDLADRIRVRLGELGIRVED 458 >gi|149191898|ref|ZP_01870131.1| cysteinyl-tRNA synthetase [Vibrio shilonii AK1] gi|148834246|gb|EDL51250.1| cysteinyl-tRNA synthetase [Vibrio shilonii AK1] Length = 460 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 259/482 (53%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYVGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LKFVRNITDIDDKIIKRANEN------GESCESLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATEFIAEIIELVEKLIDRGFAYVADNGDVMFEVSKFDKYGKLSKQDLDQLQAGARVDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHDTQ-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLD-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------VLS 353 +R ++ HYR ++++ L +A L + TS +D + Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLNQARSALERL-YTSLRGLDLDAEPTGGEEYVTRFTA 344 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT A L +ARE + L + A ++GI K Sbjct: 345 AMNDDFNTPEAYSVLFDMAREINRLKTVDLGQASQLGALMRELADVIGILHQDPEAFLKG 404 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N +A IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 405 DAGDNDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTWR 458 Query: 459 QK 460 +K Sbjct: 459 RK 460 >gi|257791977|ref|YP_003182583.1| cysteinyl-tRNA synthetase [Eggerthella lenta DSM 2243] gi|317489986|ref|ZP_07948478.1| cysteinyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA] gi|257475874|gb|ACV56194.1| cysteinyl-tRNA synthetase [Eggerthella lenta DSM 2243] gi|316910984|gb|EFV32601.1| cysteinyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA] Length = 501 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 188/517 (36%), Positives = 264/517 (51%), Gaps = 86/517 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT R +F+ ++ + MYVCGPTVY++ HIGNAR I FDV+ R L + + Sbjct: 2 IRLYNTKTRTKVDFETLERGKVGMYVCGPTVYNYIHIGNARTFISFDVIRRYLMWRGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TD+DDKII ++ +E S + + ++ T+ F++D L P +P+ Sbjct: 61 -VTFVQNVTDVDDKIIGKSLEEGRSA------AEVAAEYTEAFIEDMRAAGVLDPDIRPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT IP MI LIQ +I GHAY+A+ ++ F+ S P YG S R +DE + G R Sbjct: 114 ATEEIPAMIELIQELIDGGHAYDADGDVYFNVRSFPAYGELSGRNVDEMESGHRELRADG 173 Query: 182 ---KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FDIHGGG Sbjct: 174 KGVEDRKRDPLDFALWKAAKPGEPAWESPWGMGRPGWHIECSAMSRKYLGLPFDIHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE AQS A AN W+H G L + KMSKS GNF + ++L+ Sbjct: 234 DLVFPHHENERAQSEAACGC-TFANYWMHGGMLQINSEKMSKSLGNFKLLRDVLKVTD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 V+R ML THYR P+DF+ +RL EA L + W Q ++ I P Sbjct: 291 -----PKVLRFLMLQTHYRSPLDFSDERLAEAGAALCRIENAVKNLDW-QLQNAQDIPSP 344 Query: 350 ---------------AVLSALYNDLNTVSAIQALHKL--------ARESTKNHDLLPIFN 386 A + A+ +D NT A+ + A + D+ P+ + Sbjct: 345 LDTRELMKRTKEAKLAFILAMDDDFNTCKALGEVFDFVAAVNAQTADRTISLSDVPPVRD 404 Query: 387 ASA------HILGIEV----------------------CKEHLNKNISIAIEKLVQERLI 418 A + GI+V + + + A++ L+ R Sbjct: 405 ARGVIVELMGVFGIDVEAASASCAAGGYPPEVVGLAADIAGYEGADAAEAVDALLAARAD 464 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 K +S AD +R L GF++ED G R+T Sbjct: 465 ARAAKDWSRADAVRDGLCGLGFVIEDTP---QGARVT 498 >gi|270293221|ref|ZP_06199432.1| cysteine--tRNA ligase [Streptococcus sp. M143] gi|270279200|gb|EFA25046.1| cysteine--tRNA ligase [Streptococcus sp. M143] Length = 450 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 256/473 (54%), Gaps = 41/473 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + P + K F +D T L T Sbjct: 61 GYE--VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 PR + +I ++++I G+AYE+ ++ F NY + + +++ ++G Sbjct: 113 RHPRVVEFMADIIRFVEDLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGR 172 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKTAKTGEISWDSPWGAGRPGWHIECSVMSTGILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT-- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL-- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 289 -----IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDAQELQD 343 Query: 353 ------SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNK 403 +A+ D N + I + ++A+ ++ N+D + A + GI +E L+ Sbjct: 344 FKDKFVAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDA 403 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 404 E----IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 449 >gi|153952840|ref|YP_001393605.1| cysteinyl-tRNA synthetase [Clostridium kluyveri DSM 555] gi|219853505|ref|YP_002470627.1| hypothetical protein CKR_0162 [Clostridium kluyveri NBRC 12016] gi|187629803|sp|A5N4M6|SYC_CLOK5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765185|sp|B9DY88|SYC_CLOK1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146345721|gb|EDK32257.1| CysS [Clostridium kluyveri DSM 555] gi|219567229|dbj|BAH05213.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 182/489 (37%), Positives = 258/489 (52%), Gaps = 59/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NT+ R+ EF + P I+MYVCGPTVY+F HIGNAR +VFD + R Y G K Sbjct: 1 MRIFNTMTRRKEEFVPLIPGEIKMYVCGPTVYNFFHIGNARTFVVFDTVRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A E N + + + ++ +D L T PR Sbjct: 60 -VNFVQNFTDIDDKMIKKANDE------NITVQQLGDRFIDEYYRDADALNIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I IQ++I G+AY + ++ F+ NYG S + I++ + G R+ Sbjct: 113 ATLYISKIIEFIQDLIDKGYAYSVDGDVYFNAKKFNNYGKLSGQNIEQLQSGARIDIDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF +WK EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKNPMDFAVWKSEKKGEPSWESPWGMGRPGWHIECSCMAYNILGETIDIHAGGSDLKFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R K A W+H+ F+N+ +KMSKS NF T E+L+ + Sbjct: 233 HENEIAQS--EGRTGKVFAKYWMHSAFVNINNQKMSKSLNNFFTTREILD-------KYE 283 Query: 304 APVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDPAV-- 351 VIRL ML HYR PI+F+++ R+ + I L + + GI+D + Sbjct: 284 PDVIRLFMLSGHYRTPINFSIELLDSTKSALDRICNSIINLEELSSKVKNDGILDSEIKY 343 Query: 352 -----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 + + +D NT AI + L R+ N D L + Sbjct: 344 KEHLNSYKQRYIEKMDDDFNTADAISVIFDLIRDINTNIDENSSMEIIKYSLALIRELGS 403 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 LGI ++ +I +E L+++R K K ++ AD IR L+ KG ILED + Sbjct: 404 PLGI--LQKSKRGSIETEVELLIEKRQKARKDKNWALADKIRDDLKDKGIILEDTSDG-- 459 Query: 451 GQRMTRWKQ 459 RWK+ Sbjct: 460 ----VRWKR 464 >gi|320162457|ref|YP_004175682.1| cysteinyl-tRNA synthetase [Anaerolinea thermophila UNI-1] gi|319996311|dbj|BAJ65082.1| cysteinyl-tRNA synthetase [Anaerolinea thermophila UNI-1] Length = 468 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 187/473 (39%), Positives = 257/473 (54%), Gaps = 47/473 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK F+ ++P +RMYVCGPTVY+ AH+G+A +VFD++ R L Y + Sbjct: 3 LKIYNTLTRKKEPFETLEPGKVRMYVCGPTVYNKAHVGHAMSALVFDIIRRYLEYRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + N TD+DDKII RA Q P A + I Q++ K+ L L T PR Sbjct: 62 -VKHAMNYTDVDDKIILRASQLGMD-PFALAETYI-----QEYRKNLEDLNVLPATINPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I Q+I +IQ +I G+AY A N ++ F + +YG S RK+DE + G R+ Sbjct: 115 ATQEIDQIIAIIQGLIEKGYAYPAPNGDVYFRVTRDEDYGRLSGRKLDEMQAGARIEVGE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM+ H+LG+ DIHGGG DLIFP Sbjct: 175 QKEHPMDFALWKAAKPGEPAWDSPWGKGRPGWHIECSAMNLHHLGEQIDIHGGGNDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + A W+HNG L G KMSKS GN +TI E L Sbjct: 235 HHENEIAQSESYTG-KPFARYWVHNGMLQFGGEKMSKSLGNLVTIEEFLARHD------- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----PQTSTSKGIIDPAVLS----- 353 A V+RL +L + YR P+ F + + E L + P + GI AV + Sbjct: 287 ADVLRLMVLNSGYRAPLTFNDDVIEQTERALERLKSALRPALPGAAGISAEAVKALEEQA 346 Query: 354 ---------ALYNDLNTVSAIQALHKLAR-------ESTKNHDL---LPIFNASAHILGI 394 A+ +D NT A+ L +L R E + L + A +LG+ Sbjct: 347 RAARAGFEEAMDDDFNTAGALSHLFELVRAINSARTEGATDEQLRVGQDVLRELAGVLGL 406 Query: 395 EV-CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + +E + + I+ L++ R L K K ++ +D IR +L + G LED + Sbjct: 407 RLRMEEEKPQEAAPFIDLLIEVRTELRKQKLWALSDLIRDRLTALGVTLEDTR 459 >gi|224369425|ref|YP_002603589.1| CysS2 [Desulfobacterium autotrophicum HRM2] gi|223692142|gb|ACN15425.1| CysS2 [Desulfobacterium autotrophicum HRM2] Length = 477 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 188/496 (37%), Positives = 259/496 (52%), Gaps = 65/496 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R F ++ + ++MYVCGPTVYD +HIG+AR ++VFDV++R LR+ + Sbjct: 3 LRIYNTQTRTKETFIPLEKNKVKMYVCGPTVYDTSHIGHARSVVVFDVVFRWLRHSGYDV 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 C YVRN TD+DDKII RA + + I+ + ++F + L L PT +P+ Sbjct: 63 C--YVRNFTDVDDKIINRANE------LGQDPKEISERYIKEFHNEMDALNVLRPTIEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I IQ +I G AY +++ F S YG S R D+ G+R+ Sbjct: 115 ATEHIQDIIDFIQRLIDKGKAYHVPGSDVFFSIQSFDEYGKLSGRNPDDMMPGSRIAVDD 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK P EP W SPWG GRPGWHIECSAMS YLG+ FDIHGGG DLIFP Sbjct: 175 KKRDPKDFTLWKPVKPGEPSWPSPWGDGRPGWHIECSAMSYKYLGESFDIHGGGKDLIFP 234 Query: 244 HHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQS A KT WIHNGF+++ KMSKS GNF I ++L + + Sbjct: 235 HHENEIAQSEAA--FGKTFVRYWIHNGFVDINNEKMSKSLGNFTMIKDVL-------KDY 285 Query: 303 PAPVIRLAMLMTHYREPIDF-------TVQRLTEAEILLSKWPQTSTSKGIIDP-----A 350 V+R+ +L HYR PID+ + L + + + ++P + Sbjct: 286 HPEVMRMFLLSKHYRSPIDYNDTSMDEVISGLDRLYAFVERAQGAGATVNGVEPGKEWAS 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIFNASAHILGI 394 +A+ +D NT A+ L + + D L ILGI Sbjct: 346 FEAAMDDDFNTARAMATLFDTVKTGNRILDQQGETVSPETLSAVSTLCADLKRMGSILGI 405 Query: 395 ---------EVCKEH--LNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 KE K++ AIE+L+QER+ + K F+ AD IR +L++ +L Sbjct: 406 LAQEPQDYFRAKKESGLAGKDLDGDAIERLIQERVAARQSKNFARADEIRAELDAMNIVL 465 Query: 443 EDYKNPDNGQRMTRWK 458 ED PD T WK Sbjct: 466 ED--GPDG----TTWK 475 >gi|209363819|ref|YP_001423944.2| cysteinyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] gi|212212147|ref|YP_002303083.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] gi|212219210|ref|YP_002305997.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] gi|215919193|ref|NP_820470.2| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|218511865|sp|Q83BL7|SYC_COXBU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206584077|gb|AAO90984.2| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|207081752|gb|ABS78112.2| cysteinyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] gi|212010557|gb|ACJ17938.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] gi|212013472|gb|ACJ20852.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] Length = 460 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 179/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L ++ F+ I+ +++YVCG TVYD+ HIG+ R I+FD++ R LR E Sbjct: 3 VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RA + S + + + Q +D L L+P +PR Sbjct: 62 -VTFVRNITDIDDKIIKRAGENKESP------AALAERFIQILHEDEKALRVLSPDQEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P++I LIQ ++ + +AY N ++ FD +YG S R +DE + G RV Sbjct: 115 ATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSD 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGGLDL FP Sbjct: 175 SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + +W+H G L + KMSKS GN I+I E L+ Sbjct: 235 HHENEIAQSEAGEE-KPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESD------- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS--------AL 355 V+R +L HYR P+ ++ + L + L ++ +++ S A+ Sbjct: 287 VEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAM 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNAS---------AHILGI-----EVCKEHL 401 +D NT A L ++ RE + D I A+ +I G+ E + Sbjct: 347 DDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA 406 Query: 402 NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K + I+KL+ +R K + +AD IR QL G +ED + T W+Q+ Sbjct: 407 KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG------TSWRQE 460 >gi|331012668|gb|EGH92724.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 391 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 159/379 (41%), Positives = 222/379 (58%), Gaps = 25/379 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 8 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 67 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 120 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 179 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 180 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 239 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 240 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 292 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 351 Query: 356 YNDLNTVSAIQALHKLARE 374 +D T A L ++ RE Sbjct: 352 NDDFGTPEACAVLFEMVRE 370 >gi|326626876|gb|EGE33219.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 461 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 266/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A ++R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AEIVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|323526548|ref|YP_004228701.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1001] gi|323383550|gb|ADX55641.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1001] Length = 465 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 183/486 (37%), Positives = 263/486 (54%), Gaps = 52/486 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQAGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 E--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIAALHEDADALGIARPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIETLEANGYAYQAKDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKRS EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRSKAGEPADTGWDSKYGRGRPGWHIECSAMGCSLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QPFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L + T+ + D A L Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALGRL-YTALTDVAPDGAALDWNEAH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVCKEHLN 402 +A+ +D NT A+ L +LA E + D L A +LG E + +L Sbjct: 345 AQRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRSLGAVLGLLGRE-PRAYLQ 403 Query: 403 KNISIAIEKLVQ---------ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + A+E ++ ER + K +++AD IR +L G LED P Sbjct: 404 QAAGAAVEGALEPAAIEAKIAERAAAKQAKDYAAADRIRAELLEAGVALED--KPGG--- 458 Query: 454 MTRWKQ 459 +T W++ Sbjct: 459 LTEWRR 464 >gi|224031283|gb|ACN34717.1| unknown [Zea mays] Length = 561 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 150/324 (46%), Positives = 203/324 (62%), Gaps = 16/324 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++N+ ++ FQ + MYVCG T YDF+HIG+AR + FDVLYR L++ E Sbjct: 33 QLLLFNSFTKREEPFQPRVEGKVGMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKFLGYE 92 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + + ++ ++S+ +F+ D T L CL PT +P Sbjct: 93 --VEYVRNFTDIDDKIIKRANER------GETVTSLSSQFINEFLLDMTELQCLPPTCEP 144 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T HI +I LI I+ +G AY ++ F S P Y S S RK D+ + G RV Sbjct: 145 RVTEHIEHIIKLITQIMENGKAYAIEGDVYFSVESFPEYLSLSGRKFDQNQAGARVAFDT 204 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP W+SPWGRGRPGWHIECSAMS+HYLG VFDIHGGG DLIFP Sbjct: 205 RKRNPADFALWKAAKEGEPFWDSPWGRGRPGWHIECSAMSAHYLGHVFDIHGGGKDLIFP 264 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A + W+HNGF+N + +KM+KS+ NF TI +++ + Sbjct: 265 HHENELAQSRAA-YPDSEVKCWMHNGFVNKDDKKMAKSDNNFFTIRDIIAL-------YH 316 Query: 304 APVIRLAMLMTHYREPIDFTVQRL 327 +R ++ THYR ++ + Q L Sbjct: 317 PMALRFFLMRTHYRSDVNHSDQAL 340 >gi|326503818|dbj|BAK02695.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 563 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 185/519 (35%), Positives = 265/519 (51%), Gaps = 95/519 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N++ +K F + MYVCG T YDF+H+G+AR + FDVLYR L++ E Sbjct: 48 LQLFNSMTKKKELFVPRVEGKVGMYVCGVTPYDFSHVGHARAYVAFDVLYRYLKFLGYE- 106 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TDIDDKII+RA Q + ++ ++S+ +F+ D L CL PTH+PR Sbjct: 107 -VDYVRNFTDIDDKIIKRANQN------GETVTSLSSRFITEFLADVAELQCLPPTHEPR 159 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I LI II +G AY + ++ F + P Y S S R +D + G+RV Sbjct: 160 VTEHIENIIKLITEIIKNGKAYVVDGDVYFSVDNFPEYLSLSGRILDHNRAGSRVAVDTR 219 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NPADF LWK + EP WESPWG GRPGWHIECSAMS+HYLG VFDIHGGG DLIFPH Sbjct: 220 KRNPADFALWKAAKEGEPSWESPWGNGRPGWHIECSAMSAHYLGHVFDIHGGGKDLIFPH 279 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS A E W+HNGF+N++ +KMSKS NF TI +++ + Sbjct: 280 HENELAQSRAA-YPESEVKCWMHNGFINIDDQKMSKSVNNFFTIRDIITL-------YHP 331 Query: 305 PVIRLAMLMTHYR--------------EPIDFTVQRLTEAEILLSKWPQTSTS------- 343 +R ++ THY+ + + + Q L + + ++S + +TS Sbjct: 332 LALRFFLMRTHYKSDANHSDKALEIASDRVYYIFQTLYDCDEVVSLHREENTSAPVPAEE 391 Query: 344 KGIIDP---AVLSALYNDLNTVSAIQALHKLARESTKN---------------------- 378 + ++D A L ++ +DL T + +L + N Sbjct: 392 QKLVDDHHKAFLESMSDDLRTTDVLDGFMELLKAINGNLNDLKKLQQKLEQQKKKQQQQK 451 Query: 379 -------------HDLLPIFNASA-------HILGI-------EVCKEHLNKNISIA--- 408 D + NA ILG+ EV K+ K + A Sbjct: 452 KQQQKQQRPQKQPEDHIQALNALGAEIKHKLSILGLMPPSPLAEVLKQLKEKALKRAGLT 511 Query: 409 ---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ R+ K+F +D IRK+L SKG L D Sbjct: 512 EESLSEQIEHRIAARNNKQFEVSDQIRKELASKGIALMD 550 >gi|197263729|ref|ZP_03163803.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241984|gb|EDY24604.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 461 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWSSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|295096713|emb|CBK85803.1| cysteinyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 465 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 265/483 (54%), Gaps = 50/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Y Sbjct: 6 LKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRFLGYNL 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K YVRNITDIDDKII+RA + ++ + + + KD L L P +P Sbjct: 66 K---YVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT+HI ++I + Q +I GHAY A+N +++F + P YG+ SR+ +D+ + G RV Sbjct: 117 RATHHIHEIIDITQKLIERGHAYVADNGDVMFSVPTDPTYGALSRQDLDQLQAGARVDVV 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+F Sbjct: 177 DVKRNPMDFVLWKMSKAGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 237 PHHENEIAQSTCAHGGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYY 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGI-------IDPAVLS 353 A +R ++ HYR ++++ + L +A L + T K + + + Sbjct: 289 DAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKSVPAAGGEAFEARFVE 348 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGIEVCKEHL---- 401 + +D NT A L +ARE K+ D+ ++H +LG+ + L Sbjct: 349 VMNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANALASHLRKLSSVLGLLEQEPDLFLQS 408 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + IE L++ RL + K +++AD R +L G ILED G + T W Sbjct: 409 GAQADDGEVAEIEALIKARLEARQAKDWAAADAARNRLTEMGIILED------GPQGTTW 462 Query: 458 KQK 460 ++K Sbjct: 463 RRK 465 >gi|225387932|ref|ZP_03757696.1| hypothetical protein CLOSTASPAR_01704 [Clostridium asparagiforme DSM 15981] gi|225045975|gb|EEG56221.1| hypothetical protein CLOSTASPAR_01704 [Clostridium asparagiforme DSM 15981] Length = 469 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 187/479 (39%), Positives = 257/479 (53%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF + P ++MYVCGPTVY+F HIGNARPMIVFD + R Y E Sbjct: 1 MKIFNTLSRRKEEFVPLTPGVVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E DA I+ + ++ KD + T P Sbjct: 60 -VQYVSNFTDVDDKIIKKAIEEGV-----DA-DTISKRYIEECKKDMASMNVKPATVHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +I +I GHAY A + + F T S YG S + +++ + G R V Sbjct: 113 ATEEICGMLDMIGTLIEKGHAYAAADGTVYFRTGSFKEYGKLSHKNLEDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++PADF+LWK EP WESPW +GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEGKEDPADFVLWKPKKDGEPFWESPWCQGRPGWHIECSVMSKKYLGEQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ + A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 IFPHHENEIAQSESAND-KPFATYWMHNAFLNIDNRKMSKSLGNFFTVREI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTS 343 + V+R ML HYR P++F+ +++L + E +T Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERIITCMEKLRDLESKARGNAETCDE 344 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLAR--ESTKNHD--------LLPIFNA 387 + + A +A+ +D NT AI A+ +L + ST + D L + Sbjct: 345 QNNMAQADGLRGKYEAAMDDDFNTADAISAVFELVKLANSTADADSTARYVSYLKDMIQE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI E + + +E+L+ R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVLGI--ITERKAETLDSQVEELIAARQQARKEKNFALADEIRGRLLDMGIVLEDTR 461 >gi|308808270|ref|XP_003081445.1| D84717 probable cysteinyl-tRNA synthetase (ISS) [Ostreococcus tauri] gi|116059908|emb|CAL55967.1| D84717 probable cysteinyl-tRNA synthetase (ISS) [Ostreococcus tauri] Length = 661 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 158/336 (47%), Positives = 206/336 (61%), Gaps = 25/336 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYY 60 K+ + NT+ RK F DP+ ++MYVCG TVYD++HIG+AR + FDVLYR L+ Sbjct: 159 KLWLTNTMTRKKELFIPRDPAGKKVQMYVCGVTVYDYSHIGHARVYVAFDVLYRRLMGLG 218 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y VTY RN TDIDDKII+R+ + + +T+K F +D T L CL PT Sbjct: 219 YD---VTYCRNFTDIDDKIIKRSNES------GETCEALTNKFIDAFHEDMTALGCLRPT 269 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT + +I I+ +I G+AYEA+ ++ F ++P YG+ S RK D+ + G RV Sbjct: 270 LEPRATECVDDIIAFIERLIAKGNAYEASGDVYFSVDTLPAYGALSGRKQDDNRAGERVA 329 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNPADF LWK + P EP W SPWG GRPGWHIECSAM LG DIHGGG DL Sbjct: 330 VDERKKNPADFALWKTAKPGEPTWTSPWGDGRPGWHIECSAMIEKMLGPTIDIHGGGQDL 389 Query: 241 IFPHHENEIAQSCCADRIEKTAN------IWIHNGFLNLEGRKMSKSNGNFITINELLET 294 +FPHHENE+AQS A A+ W+HNGF+ ++ KMSKS GNF TI E+L+ Sbjct: 390 VFPHHENELAQSSAACGCGAHADENPFVRYWVHNGFVKVDSEKMSKSLGNFFTIREVLD- 448 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + V+R +L HYR PI++T + L EA Sbjct: 449 ------KYHPFVLRFMLLGAHYRAPINYTQRALEEA 478 >gi|260596903|ref|YP_003209474.1| cysteinyl-tRNA synthetase [Cronobacter turicensis z3032] gi|260216080|emb|CBA28825.1| Cysteinyl-tRNA synthetase [Cronobacter turicensis z3032] Length = 461 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 266/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R I FDV+ R LR+ G K Sbjct: 2 LKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + D ++++ + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANENG-----EDFVALV-DRMVAEMHNDFDALNILRPESEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A N +++F S +YG SR+ +++ + G RV Sbjct: 114 ATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 SKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDPA-------VLSA 354 A +R ++ HYR ++++ + L +A L + T + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDRSVAAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILG-IEVCKEHL---- 401 + +D NT A L +ARE S+ + L A +LG +E E Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ +RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQTNDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|30316338|sp|Q8U227|SYC_PYRFU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 477 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 188/485 (38%), Positives = 258/485 (53%), Gaps = 66/485 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF+ + ++MYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 2 LKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEH--KGY 59 Query: 65 CVTYVRNITDIDDKIIERARQ--EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII+RAR+ E P I I F++D L Sbjct: 60 TVLMVMNFTDIDDKIIKRARETGEDPKELAERFIKI--------FLEDMEALKVKPADIY 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T+HI +I I + G+AYE ++ I F+ P YG S KI++ + G RV Sbjct: 112 PRVTDHIDDIIEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEPG 171 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIF Sbjct: 172 EGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIF 231 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQS C + W+H GF+ ++G KMSKS GNF+TI ELL + Sbjct: 232 PHHENEIAQSEACFGH--EWVKYWLHTGFVMVKGEKMSKSLGNFVTIRELL-------KR 282 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGIID 348 + VIR +L HYR P+++T + L A+ L + T S + G ++ Sbjct: 283 YEPEVIRFFVLQKHYRSPLEYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWGELE 342 Query: 349 -----------PAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHD-----LLPIF 385 A+ +D NT A++A+ ++A E+ K + L F Sbjct: 343 FKTYEIIREGKRKFYEAMDDDFNTAEALKAVFEVANAINKYLTEANKPKESILRKALEFF 402 Query: 386 NASAHILGIEVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + G V +++ + IE LV+ R L K K++ AD IR++L+ G Sbjct: 403 KIVSEVFG--VFEDYFREETKEREESEKLIELLVEVRKQLRKEKRYELADMIREELKKLG 460 Query: 440 FILED 444 LED Sbjct: 461 IQLED 465 >gi|152973937|ref|YP_001373454.1| cysteinyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|187629791|sp|A7GK01|SYC_BACCN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|152022689|gb|ABS20459.1| cysteinyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98] Length = 465 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 259/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ ++MYVCGPTVY++ HIGNARP +VFD + R L + + Sbjct: 3 IHIYNTLTRQKEEFIPLEEKKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEHKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IAERFIEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ + T YG S + I++ + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYYRTKEFEGYGKLSHQAIEDLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KPFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID-------- 348 +IR ML HYR PI+F+ + L L + T +S + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTTYRNLKHRIESSTDLTDHNEKWLAE 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASAH-------IL 392 A +A+ +D NT +AI L+ LA + + H + A + IL Sbjct: 347 MKEFQSAFEAAMDDDFNTANAITELYNLANHANQYLLEEHTSKVVIEAYINQLEMLFRIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ KE L + IE L+Q+R+ K + F+ AD IR L+ + ILED Sbjct: 407 GLVFTKEEL---LDKEIEALIQKRIEARKNRDFALADKIRDDLKERNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|221134802|ref|ZP_03561105.1| cysteinyl-tRNA synthetase [Glaciecola sp. HTCC2999] Length = 459 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 173/467 (37%), Positives = 254/467 (54%), Gaps = 46/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL R+ F ++P+ + MYVCG TVYD +H+G+AR + FDV+ R LR+ E Sbjct: 2 LHIFNTLTREKAPFVPLEPNKVGMYVCGITVYDLSHMGHARTYLSFDVMVRYLRHMGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA I N+ +S +T + +D L L P +PR Sbjct: 61 -VKYVRNITDVDDKIIQRA------IENNETMSQLTERTVAMMHEDFAALNLLPPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +I+ ++ GHAY A++ +++FD S+ +YG+ S++ +D+ + G RV Sbjct: 114 VTTHMAEIIEVIEKLVAKGHAYVASSGDVLFDVSTFKDYGALSKQDLDQLQSGARVAVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECSAM+ +LGK FDIHGGG DL FP Sbjct: 174 GKDDPMDFVLWKKAKANEPSWSSPWGEGRPGWHIECSAMNHKHLGKHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H G + ++ KMSKS GNF T+ +LE Sbjct: 234 HHENEVAQSCCAFDT-PYVNTWVHTGMVQVDNEKMSKSLGNFFTLRSVLEQHH------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIID--PAVLS 353 +R ++ HYR + ++ L +A+ L + P + T G + Sbjct: 286 KETLRFFLMSAHYRSQLSYSQDNLEQAQSGLERLYTALRDVTPDSRTELGYGGYLARFEA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLP--------IFNASAHILGIEVCKEH----- 400 A+ +D NT A L A++ K P + + ILG C + Sbjct: 346 AMNDDFNTPIAFSVLFDCAKDLNKAKSTDPAEASRLAQVLISLGAILG---CLQDDPVNF 402 Query: 401 LNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + I A+ L+ +R K + +AD R L + G ++ED Sbjct: 403 LQSDADIDGEAVAALIAQRNQARADKDWGAADAARDALTAMGVVIED 449 >gi|282899565|ref|ZP_06307529.1| Cysteinyl-tRNA synthetase, class Ia [Cylindrospermopsis raciborskii CS-505] gi|281195444|gb|EFA70377.1| Cysteinyl-tRNA synthetase, class Ia [Cylindrospermopsis raciborskii CS-505] Length = 488 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 188/505 (37%), Positives = 269/505 (53%), Gaps = 71/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ EF+ ++P +RMY CG TVYD+ H+G+AR IV+DV+ R L + G + Sbjct: 3 LSIYNTLTRRQEEFKPVEPGQVRMYYCGVTVYDYCHLGHARACIVWDVVRRYLEFI-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RAR+E N + + + Q + +D RL PR Sbjct: 62 -VRYIQNFTDIDDKILNRARKE------NSTMETVAERYIQAYFEDMGRLGVREADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LIQ++ + G+AY A+ ++ + YG S RK+ + + G RV Sbjct: 115 ATHTMNGIKRLIQDLEVRGYAYPADGDVYYAVRKFNEYGKLSGRKLADLQAGASERVNIE 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF LWK + P EP WESPWG+GRPGWHIECSAM LG DIH GG Sbjct: 175 DPEYQKKKDPFDFALWKAAKPCEPAWESPWGKGRPGWHIECSAMVRDRLGDTIDIHAGGA 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + AN W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 235 DLIFPHHENEIAQSEAVTG-KPLANYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWP---------QTS 341 R +RL +LM YR+P+DFT + + A E LL + Q++ Sbjct: 289 -RGVDPMALRLFVLMAQYRKPLDFTEEAILAATNGWHTLKEGLLFGYHHGAKLDWDLQSA 347 Query: 342 TSKGIIDPAVL----SALYNDLNTVSAIQALHKLARESTKNHDLL--------------- 382 ID + +A+ +D N + + ++A+E K +++ Sbjct: 348 KDNTNIDQVEIEKFTTAVDDDFNFPGGLAVIFEIAKELRKEGNIIVHEGKTQTPCAKLLT 407 Query: 383 --PIFNASAHILGIEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQL 435 +LG+ + K K I + IE LVQ+R K K F+ +D IR++L Sbjct: 408 KWQTLVTLTSVLGL-IAKPEEQKTIDESLSDKVIENLVQKRQEARKAKDFAESDRIREEL 466 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 ++KG L D K TRW+++ Sbjct: 467 KAKGITLIDSKEG------TRWQRE 485 >gi|262281989|ref|ZP_06059758.1| cysteinyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] gi|262262443|gb|EEY81140.1| cysteinyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 174/472 (36%), Positives = 254/472 (53%), Gaps = 39/472 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + P + K F +D T L T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVTALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 PR + +I +++++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 RHPRVVEFMADIIRFVEDLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGR 172 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIID----- 348 V+R HYR+PI+FT + + +A + L + + Q T + D Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSDQLQAF 344 Query: 349 -PAVLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 345 LDKFTAAMDEDFNAANGITVVFELAKWINSGNYTAEVKEAFAKLLEVFGIVFVEEVLDAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR L ++G L D K +G R TR Sbjct: 405 ----IERLIEERQVARANRDFATADRIRDDLAAQGIKLLDTK---DGVRWTR 449 >gi|145298606|ref|YP_001141447.1| cysteinyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851378|gb|ABO89699.1| Cysteinyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] Length = 458 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 183/463 (39%), Positives = 257/463 (55%), Gaps = 39/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + ++ +D +T + +D L + P +PR Sbjct: 61 -LNYVRNVTDVDDKIIKRAAE--TNVTCDD----LTERLIGDMHQDFDALGMVRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++++I HAY A+N +++F S +YG S + +++ + G RV Sbjct: 114 ATQHISEIIELVESLIAQDHAYVADNGDVMFIVDSYADYGKLSGQDLEQLQAGARVGVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGGDYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA-VLSAL 355 A +R ++ HYR ++++ L +A L + P + + G A + A+ Sbjct: 286 AESVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFVDAM 345 Query: 356 YNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILGI------EVCKEHL 401 +D NT A AL L RE K D+ A +LGI K Sbjct: 346 DDDFNTPEAYSALFDLVREINRQKAEDMSVAAGLGARLRELGAVLGILQQDPDAFLKGDE 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE+L+ ER K +++AD R +L G +LED Sbjct: 406 ADEEVAEIERLIAERNQARADKNWAAADAARARLTEMGIVLED 448 >gi|119471530|ref|ZP_01613944.1| cysteinyl-tRNA synthetase [Alteromonadales bacterium TW-7] gi|119445473|gb|EAW26759.1| cysteinyl-tRNA synthetase [Alteromonadales bacterium TW-7] Length = 459 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 177/465 (38%), Positives = 258/465 (55%), Gaps = 42/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 ++IYNTL R+ +F+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ Y Sbjct: 2 VQIYNTLTRQKEQFKPMVDGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYNL 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K YVRNITD+DDKII+RA + SI ND +T + T+ +D L L P +P Sbjct: 62 K---YVRNITDVDDKIIKRANENKESI--ND----LTLRMTKAMHEDFDSLNMLRPDVEP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 T H+ ++I +++ +I GHAY A+ +++FD S+ YG+ S++ + + G+RV Sbjct: 113 TVTGHMDEIIEMVERLIAKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF+LWK++ EP W SPWG GRPGWHIECSAMSS +LG+ FDIHGGG DL F Sbjct: 173 QDKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA+ E N WIH G + + KMSKS NF T+ ++L + + Sbjct: 233 PHHENEIAQSCCANNGE-YVNTWIHTGMVQVNKEKMSKSLDNFFTVRDVL-------KEY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS--------- 353 +R ++ HYR ++++ + L +A L + I+ + S Sbjct: 285 DPESVRYFLISGHYRSQLNYSQENLDQARSSLERIYTALRDVKPIECELESNEFVIKFRK 344 Query: 354 ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKE 399 A+ +D NT A+ L +LA+E + + L I +LG+ + Sbjct: 345 AMDDDFNTPEALPVLFELAKELNRVKESDAIQAGQLAFILRTIGEVLGVAQQAPEAFLQG 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N IE L+ +R K +++AD R L + G ILED Sbjct: 405 GQDDNEVATIEALIVKRNDARASKNWAAADEARDALNALGVILED 449 >gi|82543006|ref|YP_406953.1| cysteinyl-tRNA synthetase [Shigella boydii Sb227] gi|109894937|sp|Q324Y3|SYC_SHIBS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81244417|gb|ABB65125.1| cysteine tRNA synthetase [Shigella boydii Sb227] Length = 439 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 176/450 (39%), Positives = 252/450 (56%), Gaps = 42/450 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L + L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSA 428 + A IE L+Q+RL K K ++ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAGG 435 >gi|329999154|ref|ZP_08303351.1| cysteine--tRNA ligase [Klebsiella sp. MS 92-3] gi|328538407|gb|EGF64532.1| cysteine--tRNA ligase [Klebsiella sp. MS 92-3] Length = 444 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 163/383 (42%), Positives = 227/383 (59%), Gaps = 26/383 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A IR ++ HYR ++++ + L +A L + + + +D A + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK 377 + +D NT A L +ARE + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNR 368 >gi|284048089|ref|YP_003398428.1| cysteinyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] gi|283952310|gb|ADB47113.1| cysteinyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] Length = 481 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 179/500 (35%), Positives = 253/500 (50%), Gaps = 65/500 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN + R+ EF + P + +YVCG T Y+ HIGNARP +V+D + R L + + Sbjct: 3 IRVYNDMTRQKEEFVPLHPGKVGIYVCGVTPYNHPHIGNARPFVVWDTIRRFLDHEGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII A +E + +I ++ + + + +L PR Sbjct: 62 -VTYVQNFTDVDDKIIRAANEEGVTW------DVIANRYIKAYFEVMDKLHVKRAHIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HIP +I+ +Q +I +G+ Y + ++ + +YG S RK+D+ G RV Sbjct: 115 VSEHIPDIIHTVQELINNGYGYVVDGDVYYRVERFSHYGELSGRKLDDMMAGARVDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG+GRPGWHIECS MS+ YLG D HGGG DLIFPH Sbjct: 175 KENPMDFALWKSAKPGEPSWDSPWGKGRPGWHIECSTMSTKYLGNTLDFHGGGSDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+ + KMSKS GNF T+ +LL + + Sbjct: 235 HENEIAQSEGATGVHPFVRYWVHNGFITINEEKMSKSLGNFKTVYDLL-------KEYEP 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 IR +L THYR P+DF+ +RL EA L + + I + Sbjct: 288 ETIRYFILNTHYRSPLDFSQERLAEAGRSLERLRTAQNNLQEIQQVITVGPDAESLALRD 347 Query: 352 ---------LSALYNDLNTVSAIQALHKLARESTKNHDLL-------------PIFNASA 389 A+ +D NT AI L LA+E H+ + I A Sbjct: 348 KVEELRKGFFDAMSDDFNTSLAISYLFALAKEINVYHNAIISGAKKPDGKLVEQIDKAWK 407 Query: 390 HILGIEVCKEH---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ++G+ E+ N I ++ER K + F+ AD IR +L +KG Sbjct: 408 EMIGVIGILENQPAANGEGGAVSNEEAEIAARIEERQAARKARDFAKADAIRDELAAKGI 467 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 ILED P RWK+K Sbjct: 468 ILED--TPQG----VRWKRK 481 >gi|270291200|ref|ZP_06197423.1| cysteinyl-tRNA synthetase [Pediococcus acidilactici 7_4] gi|270280596|gb|EFA26431.1| cysteinyl-tRNA synthetase [Pediococcus acidilactici 7_4] Length = 472 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 182/492 (36%), Positives = 259/492 (52%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT+ R F+ + + MYVCGPTVY++ HIGNAR +I FD + R L Y + Sbjct: 2 IKLYNTMTRSKEVFKPLVDQQVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A+ E+ ++P + + F +D L T PR Sbjct: 61 -VRFVSNFTDVDDKMIKAAQAENITVPE------LAERYIAAFKEDVQALNVEPATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I +I + ++I +AY + + NYG+ S + IDE + G Sbjct: 114 ATENIADIIAFVADLIEKDYAYVVEGNVYYRARRFKNYGALSHQNIDELEQGASQHINDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E WE+PWG+GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETMQKEDPIDFALWKAAKPGEIAWEAPWGKGRPGWHIECSVMSTKYLGDTFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS ++ A W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 QFPHHENEIAQSEARTGVQ-FARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA 350 + V+R M T YR+PI +T L +A+ L K T+ G DPA Sbjct: 287 -KQVNPQVLRFLMSTTQYRKPIQYTETSLQDAKNNLEKLQNAYVNLNYRLQTADGAADPA 345 Query: 351 V-----------LSALYNDLNTVSAIQALHKLAR-------ESTKNHD----LLPIFNAS 388 V ++A+ +D N + I +++ AR ++T NH+ L F Sbjct: 346 VDQQAAALQADFVAAMDDDFNAQNGITVVYEFARLINVYSEQATVNHEQIARLAKQFAEM 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A I GIE+ IE LV++R + F ++D +R QL+ G ILED P Sbjct: 406 AAIFGIELATA-TEAPADEKIEALVKQRDAARAARDFETSDRLRDQLKEMGIILED--TP 462 Query: 449 DNGQRMTRWKQK 460 TRW++K Sbjct: 463 QG----TRWRKK 470 >gi|83719803|ref|YP_442471.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis E264] gi|167581386|ref|ZP_02374260.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis TXDOH] gi|167621097|ref|ZP_02389728.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis Bt4] gi|257138679|ref|ZP_05586941.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis E264] gi|109894888|sp|Q2SX78|SYC_BURTA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83653628|gb|ABC37691.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis E264] Length = 465 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 184/472 (38%), Positives = 255/472 (54%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R +F P +RMYVCG TVYD+ HIG+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRA--A 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + D L P + Sbjct: 60 GYRVTYVRNITDIDDKIIRRALEN------GETIQSLTRRFIDAMNADFDALGVERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K K +P DF+LWKR+ P EP WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 KDAKDDPLDFVLWKRAKPEEPAGASWESKYGAGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ D A L Sbjct: 288 --KYDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRL-YTALKDVTPDAAPLDWSEAH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHDLLPIF------NASAHILGIEVCKEHL 401 +A+ +D NT A+ L +LA E + + P A L +E L Sbjct: 345 AQRFAAAMNDDFNTAVAVAVLFELATEVNRTRE--PALARQLKRLAGLLGLLGREPREFL 402 Query: 402 NKNISIA---------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + A IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQAAGAARTGALEPDEIEARIAARVAAKQAKNYAEADRIRAELLEAGIALED 454 >gi|325288490|ref|YP_004264671.1| cysteinyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] gi|324963891|gb|ADY54670.1| cysteinyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] Length = 476 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 254/479 (53%), Gaps = 54/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF + + MY CGPT Y++ H+GNAR ++VFD++ R L Y E Sbjct: 3 VKIYNTIHKEKEEFIPREAGKVAMYACGPTTYNYFHLGNARMLVVFDMVRRYLAYKGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII+RA +E+ P+ + + +++ KD L T P+ Sbjct: 62 -VTYVQNFTDVDDKIIKRASEENCE-PL-----ALAGRYIEEYYKDANALNIQPATVHPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI +MI +I+ + G AY ++ F P YG S R +++ + G RV Sbjct: 115 ATDHIKEMIEIIKGLEKKGLAYPVEGDVYFAVEHFPQYGRLSGRNLEDLQAGARVEIDDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK++ P EP W SPWG GRPGWHIECSAM+ YLG FDIHGGG DL+FPH Sbjct: 175 KLNPMDFALWKKAKPGEPAWPSPWGDGRPGWHIECSAMALKYLGPNFDIHGGGGDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E+ A W+HN F+ + KMSKS GNF I ++L KKF P Sbjct: 235 HENEIAQSEGYLDGEQFARYWMHNAFITVNQEKMSKSLGNFFMIRDIL--KKF-----PG 287 Query: 305 PVIRLAMLMTHYREPIDF----------------TVQRLTEAEILLSKWPQTSTSKGII- 347 V+R +L THYR P+DF T RL + K ++ ++G + Sbjct: 288 EVVRFYLLGTHYRSPLDFDDEKLEMAARGLDRLKTSVRLAGEALSKGKSTDSAGTRGELL 347 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASAH 390 A A+ +D N+ A +L LA+E + + A Sbjct: 348 NASSKARAAFEEAMEDDFNSAQAYASLFDLAKEINTALNEGGWTGAQIAEARDTLIDLAG 407 Query: 391 ILGIEVCKEHL-----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ILG ++ K+ + + +E +++ R K +S+AD IR +L+ ILED Sbjct: 408 ILGFDLQKDSEVPAGESGKFNAVMELVLELRAKARADKDWSTADLIRDRLKEASIILED 466 >gi|241667314|ref|ZP_04754892.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875866|ref|ZP_05248576.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841887|gb|EET20301.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 459 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 184/472 (38%), Positives = 253/472 (53%), Gaps = 59/472 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L K EF+ I+P+ I+MYVCG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGKKEEFKPIEPNKIKMYVCGITVYDDCHIGHARTNIAFDVINRYFKYRGFD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT--------TRLACLA 118 T+VRNITDIDDKII+RA + + T Q V+ T +L L Sbjct: 61 TFVRNITDIDDKIIKRANE--------------NGETTDQLVERTIKSMHDAFDKLNILR 106 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 PT +PRAT IP+MI +I+ ++ G AY+ N ++ + + +YG S++ ++ + G+ Sbjct: 107 PTKEPRATQTIPEMIAMIETLVEKGFAYQGTNGDVFYRVAKFADYGKLSKQNLEALEQGS 166 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 RV K+NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG Sbjct: 167 RVDVVEEKENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGG 226 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS + AN W+H+G + + KMSKS NF TINE++E Sbjct: 227 SDLRFPHHENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTINEVIE---- 281 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPA-- 350 + VIR + T YR I+++ + L A + + + D A Sbjct: 282 ---EYHPEVIRYFLASTVYRSEINYSKENLDNARASVERLFNALRDIEPVEVNLPDDANE 338 Query: 351 ----VLSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI---- 394 + A+ ND NT A+ L LA+E K + +LGI Sbjct: 339 YEEKFIKAMDNDFNTPEALAVLFSLAKEINTLKTVNKYKASGYAFLLRKLCDVLGILFTD 398 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E K+ ++S IEKL+ ER K K ++ AD IR +L+++G ILED Sbjct: 399 IEEYFKQGDGIDVS-EIEKLIAERAQAKKDKNYARADEIRNELQNQGIILED 449 >gi|167044639|gb|ABZ09311.1| putative tRNA synthetases class I (C) catalytic domain protein [uncultured marine crenarchaeote HF4000_APKG7F19] Length = 463 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 191/471 (40%), Positives = 257/471 (54%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++TL TE + D +R+Y+CG TVYD AHIG+AR +IVFDVL R L + Sbjct: 2 MQIFDTLGNTKTELKFSDK--VRIYLCGVTVYDDAHIGHARTIIVFDVLRRFLES--QKI 57 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKIIERA QE S P+ + +K T+ + D RL T P+ Sbjct: 58 LVEFVQNFTDVDDKIIERALQEKTS-PLE-----LAAKYTKNYFDDFDRLNVKRATMYPK 111 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI M LI N++ +AY N + F S YG S++K D+ G RV Sbjct: 112 ATEHIEDMQNLISNLVDKKYAYITKNGVYFSVSKFTEYGKLSKKKTDDLISGARVAVDEE 171 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK S EP W+SPWG+GRPGWHIECSAMS YLG+ F+IHGGG DLIFPH Sbjct: 172 KNNPIDFALWKFSNS-EPSWDSPWGKGRPGWHIECSAMSLKYLGENFEIHGGGRDLIFPH 230 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + T IW+H G + + G KMSKS GN ++N +LE +W Sbjct: 231 HENEIAQSESFMSNQFT-KIWMHVGMITINGEKMSKSLGNVKSVNHVLE-------NWGP 282 Query: 305 PVIRLAMLMTHYREPID----FTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 +IRL L Y +PID F + +T+ + S + + ++G + + Sbjct: 283 NIIRLFCLSGSYSKPIDYSEKFLKENITKLRQIESCYYELRLAEGTDEETIAEKLVKECR 342 Query: 353 ----SALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASAHILGIEVC 397 SAL NDLNT A+ A +KL RE T +LP F + ILGI++ Sbjct: 343 DEFDSALNNDLNTPLALTAFYKLIREVNSLAAEEKITQTSAEIVLPEFERMSGILGIQIL 402 Query: 398 K-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K KN I +++++R K + AD IR ++ K I D+KN Sbjct: 403 KVSDAEKN---EINQMIKKRDEYRMQKNYEQADSIRAKIAEKNIIFFDHKN 450 >gi|326560050|gb|EGE10445.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 46P47B1] Length = 480 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 187/494 (37%), Positives = 259/494 (52%), Gaps = 58/494 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++Y+TL F+ I I +YVCG TVYD+ H+G+AR M+ FDV+ R LR Sbjct: 8 QSQLQLYDTLSASKRPFKPIHAGQIGIYVCGMTVYDYCHMGHARVMVGFDVIVRWLRAIG 67 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII+RA + I+ +T + +D L C +P Sbjct: 68 YQ--VNYVRNITDIDDKIIQRAYDN------GETITELTDRFITAMHQDEQFLGCQSPNI 119 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 +PRAT HI M +LI ++ AY+ + ++ + PNYG S+R +D+ + G R Sbjct: 120 EPRATEHIENMQHLIDVLLTKNLAYQGSGGDVYYAIEKFPNYGKLSKRHVDDMQAGASER 179 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG+ FDIHGGG Sbjct: 180 VSTAEDKRHPFDFVLWKTAKPSEPHWQSPWGLGRPGWHIECSAMSTCCLGETFDIHGGGH 239 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI E+++ Sbjct: 240 DLQFPHHENEIAQSEGATG-KTYANHWMHMGFINIDGEKMSKSLGNFFTIREVMD----- 293 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---GIID------- 348 + IR +L +HYR P++F+ L E+ LS+ Q+ S G+I Sbjct: 294 --KFHPETIRFFLLSSHYRSPVNFSDTALKESHTALSRIYQSLKSAENFGVISIMPNAWE 351 Query: 349 ----PAVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFNASAHILGIE 395 A A+ +D NT A+ L + A E K A +L I Sbjct: 352 SEAGQAFAKAMNDDFNTPKAVSVLFSVVTEINRAMKAGEYQKATQEASTLKTLASVLNIA 411 Query: 396 VCKEH--LNKNIS--------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 H L NI I + +R K F+ AD IR +L +G LED Sbjct: 412 QSSPHEFLQANIGNKPDGLSDAEIANKIAQRQQAKAQKNFAKADAIRDELNRQGIELED- 470 Query: 446 KNPDNGQRMTRWKQ 459 G+ T W++ Sbjct: 471 -----GRMGTTWRR 479 >gi|315230286|ref|YP_004070722.1| cysteinyl-tRNA synthetase [Thermococcus barophilus MP] gi|315183314|gb|ADT83499.1| cysteinyl-tRNA synthetase [Thermococcus barophilus MP] Length = 474 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 186/480 (38%), Positives = 250/480 (52%), Gaps = 58/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 1 MKVYNTLTKQKEEFKPLREGEVRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEH--KGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RA QE P + K + F++D L PR Sbjct: 59 TVLMVMNFTDIDDKIIRRA-QETGEDPKE-----LAEKFLKYFLEDMKALKVKPADIYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I ++ + G+AYE ++ + F+ +YG S K++E + G RV Sbjct: 113 VTEHIEDIIDFVKKLEEKGYAYEGSDGVYFEVQRFRDYGKLSGIKLEELRKGARVEPGEG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK++ P EP W+SPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIFPH Sbjct: 173 KRNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSTMSTKYLGEQFDIHGGGNDLIFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQ+ C + + W+H GF+ ++G KMSKS GNF+TI ELL+ + Sbjct: 233 HENEIAQTEACTGK--EWVRYWLHTGFVMVKGEKMSKSLGNFVTIRELLQ-------RYS 283 Query: 304 APVIRLAMLMTHYREPIDFTVQ---------------------RLTEAEILLSKWPQTST 342 VIR +L HYR P+D+T + L +AEI KW + Sbjct: 284 PEVIRFFVLQKHYRSPLDYTEEGIQHAKNNLEKLYNTIENIRIALEKAEIPF-KWSKEEF 342 Query: 343 S-KGIIDPA---VLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFN 386 +I A A+ +D NT A++ + ++A K L F Sbjct: 343 ELYEVIREAKRKFYEAMDDDFNTAEAMKPIFEVANAVNKYLAKVEKPKESVLRKALEFFK 402 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + GI E KE IE L+Q R L K K ++ AD IR +L G LED Sbjct: 403 MVGEVFGIFEEYFKETKETKEEELIELLIQVRAELRKQKNYALADKIRAELRELGIQLED 462 >gi|258513619|ref|YP_003189841.1| cysteinyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257777324|gb|ACV61218.1| cysteinyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 500 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 185/521 (35%), Positives = 265/521 (50%), Gaps = 91/521 (17%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ EF P + MYVCGPT Y+F H+GNARP++ FD + R L Y G + V Sbjct: 3 LYNTLSRQKEEFVPAIPGRVSMYVCGPTTYNFIHLGNARPLVFFDTVRRYL-IYKGYQ-V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV+N TDIDDKII+RA +E S + K T+++ D T L + P+ + Sbjct: 61 LYVQNFTDIDDKIIKRAAEEKLDP------SALAFKYTEEYYIDATSLNVMMADIHPKVS 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +H+ ++I L++ ++ G AY+++ ++ F+ +YG S R +++ G RV K+ Sbjct: 115 DHMAEIIELVEKLVQKGFAYQSDGDVYFEVRRFKDYGKLSGRALEDMLAGARVEVNEKKR 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF LWK + P EP W SPWG+GRPGWHIECSAMS YLG+ FD+HGGG DLIFPHHE Sbjct: 175 DPMDFALWKAAKPGEPSWNSPWGQGRPGWHIECSAMSLKYLGENFDMHGGGADLIFPHHE 234 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS A E A W+HNGF+ + KMSKS GNF + E+L+ + V Sbjct: 235 NEIAQSEAATG-EPLARYWLHNGFITVNQEKMSKSLGNFFLVREILD-------KFSPEV 286 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------------------PQT 340 +R +L THYR P+DF ++L E L + P Sbjct: 287 VRFFLLGTHYRSPLDFDDEKLAVVEKGLDRIRTSIQLLGEACQRAGVDFSMINAKEKPAR 346 Query: 341 STSKGIID-------------PAVLSALYNDLNTVSAIQALHKLAREST----------- 376 TS IID + A+ +D NT A+ +L +LA+E+ Sbjct: 347 VTS--IIDTRHSSMKAFIKIKTSFEQAMEDDFNTALAVGSLFELAKETNILVQSLGPKIS 404 Query: 377 --------KNHDLLPIFNASAHILGIEVC---------KEHLNKNISIAIEKLVQERLIL 419 + +L +FN I ++C E + + ++ L+ R Sbjct: 405 EQEKACLLQAAELFKLFNQVLGIFKEDLCTGYPLVTPVDESGDGMLEAVMQMLLDIRNEA 464 Query: 420 LKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K K ++ +D IR L+ ILED P TRWK++ Sbjct: 465 RKNKNWALSDRIRDALKDINVILED--TPQG----TRWKKQ 499 >gi|153209422|ref|ZP_01947398.1| cysteinyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165919402|ref|ZP_02219468.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 334] gi|187629807|sp|A9KBJ2|SYC_COXBN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120575359|gb|EAX31983.1| cysteinyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165916918|gb|EDR35522.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 334] Length = 458 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 179/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L ++ F+ I+ +++YVCG TVYD+ HIG+ R I+FD++ R LR E Sbjct: 1 MKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RA + S + + + Q +D L L+P +PR Sbjct: 60 -VTFVRNITDIDDKIIKRAGENKESP------AALAERFIQILHEDEKALRVLSPDQEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P++I LIQ ++ + +AY N ++ FD +YG S R +DE + G RV Sbjct: 113 ATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGGLDL FP Sbjct: 173 SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + +W+H G L + KMSKS GN I+I E L+ Sbjct: 233 HHENEIAQSEAGEE-KPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESD------- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS--------AL 355 V+R +L HYR P+ ++ + L + L ++ +++ S A+ Sbjct: 285 VEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAM 344 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNAS---------AHILGI-----EVCKEHL 401 +D NT A L ++ RE + D I A+ +I G+ E + Sbjct: 345 DDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA 404 Query: 402 NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K + I+KL+ +R K + +AD IR QL G +ED + T W+Q+ Sbjct: 405 KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG------TSWRQE 458 >gi|14590527|ref|NP_142595.1| cysteinyl-tRNA synthetase [Pyrococcus horikoshii OT3] gi|6831682|sp|O58370|SYC_PYRHO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|3257043|dbj|BAA29726.1| 476aa long hypothetical cysteinyl-tRNA synthetase [Pyrococcus horikoshii OT3] Length = 476 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 190/479 (39%), Positives = 258/479 (53%), Gaps = 56/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL ++ EF+ I+ +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 LRIYNTLTKQKEEFKPINEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEH--KGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RA++ + + + K + F++D L PR Sbjct: 61 SVLMVMNFTDIDDKIIRRAKE------TGEDPAKLAEKFIKVFLEDMKALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I I+ + G+AYE ++ + F+ YG S K++E + G RV Sbjct: 115 VTEHIEDIIQFIERLKEKGYAYEGSDGVYFEVQKFKEYGKLSGVKLEELRKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP WESPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C + + W+H GF+ ++G KMSKS GNF+T+ ELL+ + Sbjct: 235 HENEIAQSEACFGH--EWVHYWLHTGFVMVKGEKMSKSLGNFVTVRELLQ-------RYS 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-IDPAVLS--------- 353 VIR +L HYR P+D++ + L A+ L + T + I ++ A L+ Sbjct: 286 PEVIRFFVLQKHYRSPLDYSEEGLQHAKNNLERLYNTLENIRIAMENAELAYTWDENDFK 345 Query: 354 --------------ALYNDLNTVSAIQ-------ALHKLARESTKNHDLL-----PIFNA 387 A+ +D NT A++ A++K E+ K + + F Sbjct: 346 AYNSIKEARRKFYEAMDDDFNTAEALKAVFEVSNAINKYITEAEKPKESVLRKAWEFFRT 405 Query: 388 SAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I GI E KE K IE L+Q R L K +KF AD IR++L G LED Sbjct: 406 VGEIFGIFEEYFKEEKAKEEEKLIELLIQVRAELRKERKFELADKIREELRKLGIQLED 464 >gi|271501481|ref|YP_003334507.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech586] gi|270345036|gb|ACZ77801.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech586] Length = 461 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 181/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + + I +T++ + D L L+P +PR Sbjct: 61 -VKYVRNITDIDDKIIRRATEN------GETIEQLTNRMIDEMHTDFRALNILSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I ++I L++ +I HAY A+N +++F + P YG SR+ +++ K G RV Sbjct: 114 ATHYIAEIIELVEKLIARRHAYVADNGDVMFSVDTAPGYGVLSRQDLEQLKAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGDYV-NYWMHSGMVMVDREKMSKSLNNFFTVRDVLS-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSA 354 A IR ++ HYR +++T + L +A L + PA A Sbjct: 286 AETIRYFLISGHYRSQLNYTEENLKQARASLERLYTALRGTDASVPAAGGEAFEHRFRDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNASAHILGIEVCKEH--------- 400 + +D NT A L +ARE + + +A + G+ EH Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKADDAAAASGLASALRQLAGVLGLLEHDPELFLQSG 405 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R + K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVQEIEALIKQRNDARQSKDWALADAARNRLTEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|257438112|ref|ZP_05613867.1| cysteine--tRNA ligase [Faecalibacterium prausnitzii A2-165] gi|257199443|gb|EEU97727.1| cysteine--tRNA ligase [Faecalibacterium prausnitzii A2-165] Length = 465 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 188/473 (39%), Positives = 266/473 (56%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF P R+YVCGPTVY++ HIGNARP+IVFD L R L Y G K Sbjct: 1 MQIFNTLTRQKEEFVPQVPGEYRIYVCGPTVYNYIHIGNARPLIVFDTLRRYLEYR-GNK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDK+I++ ++E S+ + + +++KD L C PT QPR Sbjct: 60 -VIYVSNITDIDDKLIKKGQEEGTSM------KEVAQRFEAEYLKDAAGLNCKKPTVQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----V 179 AT HI Q++ +++++I GHAY A N ++ F S P YG S K+D+ + G R Sbjct: 113 ATEHIQQILDIVKDLIDSGHAYVAKNGDVYFRVKSDPEYGKLSHLKLDDLESGNRELRSQ 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++PADF +WK + P EP WESP+G GRPGWHIECSAMS +LGK D+H GG D Sbjct: 173 MEDDLKEDPADFAVWKAAKPGEPAWESPYGMGRPGWHIECSAMSRTHLGKTIDLHCGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS CA+ E A+ W+HNGF+N++ +KMSKS NF T+ ++ + + Sbjct: 233 LIFPHHENEIAQSECANGCE-FAHYWMHNGFINVDNQKMSKSLHNFFTVRDVADLYGY-- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWP----QTS 341 IR ML YR P+++TV + + LSK +T Sbjct: 290 -----EPIRYFMLTAGYRMPLNYTVDLIESCKNSLERLYTCRENLDFALSKTAFGTDETL 344 Query: 342 TSKGIIDPA-VLSALYNDLNTVSAIQALHKLARE---------STKNHDLLPIFNASAHI 391 T+K A A+ +DLNT A+ A+ L +E F+ + Sbjct: 345 TAKADEARAKFCKAMDDDLNTPDALAAVFDLVKEINTLSAASSKAALEAAAKAFDEITGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ + + +LV++R K K +++AD IR QL G+ ++D Sbjct: 405 LGLMYNRK--KDEVPAEVTELVEKRAAAKKAKDWAAADAIRAQLTEMGWAVKD 455 >gi|295694815|ref|YP_003588053.1| cysteinyl-tRNA synthetase [Bacillus tusciae DSM 2912] gi|295410417|gb|ADG04909.1| cysteinyl-tRNA synthetase [Bacillus tusciae DSM 2912] Length = 476 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 256/478 (53%), Gaps = 54/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NTL ++ F+ +P ++MY CGPTVYD+ HIGNAR +VFD++ R LRY Sbjct: 3 IRVFNTLTKRKEVFEPQEPGVVKMYCCGPTVYDYFHIGNARAFVVFDLVRRYLRYR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII RA +EH A+ + K + + +D L QPR Sbjct: 61 RVTYVQNFTDVDDKIIRRAAEEHM------AVQDLAEKYIRAYFEDAAALGIEPADVQPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ ++I +IQ ++ G AY ++ FDTS P+YG S + G RV Sbjct: 115 VTMHMHEIIDMIQALLDKGFAYRIQEDVYFDTSRDPDYGKLSGQDPAALMAGARVEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P E W+SPWG+GRPGWHIECSAMS YLG DIH GG DLIFPH Sbjct: 175 KRHPLDFALWKGSKPGEVAWDSPWGKGRPGWHIECSAMSRTYLGDTLDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C A W+HNG+L KMSKS GN +T+ ELL+ + Sbjct: 235 HENEIAQSECVTG-HPFARYWMHNGYLQWNRVKMSKSLGNVVTVRELLKRVR-------P 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------W--PQTSTSKGIID---- 348 IRL +L HYR P++F+++ L +A+ L + W P +S + + + Sbjct: 287 HAIRLYLLSAHYRHPLNFSLELLEQADRGLERIESSLRDLGDWLGPDSSLTGAVTEESGH 346 Query: 349 -PAV------------LSALYNDLNTVSAIQALHK---LARESTKNHDLLPI------FN 386 P + A+ +D NT A+ AL++ LA + + D+ + Sbjct: 347 VPGLEVDEVQRIHEKWTEAMDDDFNTAEALGALYEGVGLANRAIREQDVTRAKAWQGWLS 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +G+ + ++ IE L+ R K + +++AD IR QL G +LED Sbjct: 407 YHARFMGLIADGQKESETEREKIEALIARRAEARKKRDWAAADRIRDQLSEMGIVLED 464 >gi|134298071|ref|YP_001111567.1| cysteinyl-tRNA synthetase [Desulfotomaculum reducens MI-1] gi|187629810|sp|A4J0Y9|SYC_DESRM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|134050771|gb|ABO48742.1| cysteinyl-tRNA synthetase [Desulfotomaculum reducens MI-1] Length = 486 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 189/507 (37%), Positives = 255/507 (50%), Gaps = 73/507 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R EF D ++ MYVCGPT Y+F H+GNARP++ FD + R Y G K Sbjct: 1 MQIYNTLARAKEEFIPRDKGHVSMYVCGPTTYNFIHLGNARPLVFFDTVRRYF-LYKGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII RA +E P+ + K Q+F D L + P+ Sbjct: 60 -VDYVQNFTDVDDKIINRAAEEKID-PLE-----LAQKYIQEFFVDADALNVMRADTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HI ++I LI+ + GHAY + ++ F S YG S R +++ + G RV Sbjct: 113 VSEHIEEIIDLIKRLEDQGHAYVVDGDVYFAVRSFAEYGKLSGRSLEDMQAGARVEVDPR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + P EP W+SPWG GRPGWHIECSAM+ YLG FDIHGGG DLIFPH Sbjct: 173 KKDPMDFALWKAAKPGEPSWDSPWGSGRPGWHIECSAMAEKYLGNGFDIHGGGFDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNGF+ + KMSKS GNF + E+L +P Sbjct: 233 HENEIAQSEAACKA-PFARYWMHNGFITINQEKMSKSLGNFFLVREILA-------KFPP 284 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKG--------- 345 V+R +L THYR P+DF ++R+ A LL + +G Sbjct: 285 DVVRWYLLSTHYRSPLDFDDEKLVMSGKGLERIKTALRLLYEAMDLPVYEGEDIQGAENF 344 Query: 346 -----IIDPAVLSALYNDLNTVSAIQALHKLAREST-------------------KNHDL 381 I A+ +D NT AI LA+E + H L Sbjct: 345 EETLQRIRLEFEKAMDDDFNTALAISYFFDLAKEVNIYVGKLNSKVTLEMRKILDQAHTL 404 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL--------KMKKFSSADYIRK 433 + FN IL + L ++ A + L + + L+ K +S+AD IR Sbjct: 405 IKDFNRVLGILKEDKMTGKLLIEMAGADDTLTEGLVQLIIKIRQEARSKKDWSTADAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 L+ G +LED P RWK++ Sbjct: 465 GLKELGVVLED--TPQG----VRWKKQ 485 >gi|309790456|ref|ZP_07685017.1| cysteinyl-tRNA synthetase [Oscillochloris trichoides DG6] gi|308227504|gb|EFO81171.1| cysteinyl-tRNA synthetase [Oscillochloris trichoides DG6] Length = 477 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 186/488 (38%), Positives = 262/488 (53%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYN+L RK+ + ++P +RMYVCG TVYD AHIG+A +VFD++ R L + E Sbjct: 11 IQIYNSLTRKVEPLETVEPQVVRMYVCGVTVYDDAHIGHAMSAVVFDIIRRYLEFRGYE- 69 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII RA + D +++ ++ +F+ RL L T PR Sbjct: 70 -VRHIVNFTDVDDKIIARA-----ATLGRDPLTM-AAQYADEFLAQLERLNVLPATAYPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+ + ++I + +I GHAY A ++ F +S +YG S R ++E GTR Sbjct: 123 ATHTMAEIIDFTERLIAAGHAYPAEGDVYFRVASDADYGKLSGRSLEEMLTGTRFEVDPR 182 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF LWK + P EP W SPWG GRPGWHIECSAMS +LG+ DIHGGG DL+FPH Sbjct: 183 KESPADFALWKGAKPGEPAWPSPWGNGRPGWHIECSAMSMKHLGEEIDIHGGGNDLVFPH 242 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNL------EGRKMSKSNGNFITINELLETKKFG 298 HENEIAQS C + A W+HNG L L + KMSKS GN +TI+ L Sbjct: 243 HENEIAQSECLTG-KSFARYWVHNGMLQLVNPETRQVEKMSKSLGNVVTIDSFLS----- 296 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQ-------RLTEAEILLSKWPQTSTSKGIID--- 348 + A V RL +L ++YR P+ + + +L L ++ S ++ Sbjct: 297 --QYDADVFRLIVLSSYYRSPLTYNTEIAADNARKLDRLLGALLPALGSNASGPAVESLN 354 Query: 349 -------PAVLSALYNDLNTVSAIQALHKL------ARESTKNHDLLPIFNAS----AHI 391 A LSA+ D NT A+ AL +L AR++ D S A + Sbjct: 355 QSVERTRSAFLSAMDADFNTAGALAALFELVRAINVARDAGVGGDAFSAAQNSLRELASV 414 Query: 392 LGIEVCKEHL-NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 LG+ + +H + ++ IE L++ R L K K+F AD IR +L G LED Sbjct: 415 LGLRLNPQHAKQQEVAPFIELLIELRTSLRKAKQFELADTIRTRLADLGVTLED------ 468 Query: 451 GQRMTRWK 458 G + TR+K Sbjct: 469 GPQGTRYK 476 >gi|82775639|ref|YP_401986.1| cysteinyl-tRNA synthetase [Shigella dysenteriae Sd197] gi|109894938|sp|Q32JL0|SYC_SHIDS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81239787|gb|ABB60497.1| cysteine tRNA synthetase [Shigella dysenteriae Sd197] Length = 461 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 268/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFNALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY +N +++FD + P YG SR+ +D+ G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVVDNGDVMFDVPTDPTYGVLSRQDLDQLLAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+N DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNTMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCA-HDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D+ ++H +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|167626735|ref|YP_001677235.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189082064|sp|B0U0I3|SYC_FRAP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167596736|gb|ABZ86734.1| Cysteine--tRNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 459 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L K EF+ I+P+ I+MYVCG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGKKEEFKPIEPNKIKMYVCGITVYDDCHIGHARTNIAFDVINRYFKYRGFD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+VRNITDIDDKII+RA + + + + + +L L PT +PRAT Sbjct: 61 TFVRNITDIDDKIIKRANEN------GETTDKLVERTIKSMHDAFDKLNILRPTKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+MI +I+ ++ G AY+ N ++ + + +YG S++ ++ + G+RV K Sbjct: 115 QTIPEMIAMIETLVEKGFAYQGTNGDVFYRVAKFADYGKLSKQNLEALEQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TINE++E + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTINEVIE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 VIR + T YR I+++ + L A + + P ++ + Sbjct: 287 VIRYFLASTVYRSEINYSKENLDNARASVERLFNALRDIEPVEVNLPDDASE---YEEKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 344 IKAMDNDFNTPEALAVLFSLAKEINTLKTVNKYKASGYAFLLRKLCDVLGILFTDIEEYF 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ ++S IEKL+ ER K K ++ AD IR L+++G ILED Sbjct: 404 KQGDGIDVS-EIEKLIAERTQAKKDKNYARADEIRNDLQNQGIILED 449 >gi|73540824|ref|YP_295344.1| cysteinyl-tRNA synthetase [Ralstonia eutropha JMP134] gi|109894927|sp|Q473D3|SYC_RALEJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72118237|gb|AAZ60500.1| cysteinyl-tRNA synthetase [Ralstonia eutropha JMP134] Length = 462 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 179/464 (38%), Positives = 252/464 (54%), Gaps = 40/464 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR + Sbjct: 4 LNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+NITDIDDKII RA + + I +T++ Q +D L + P H+PR Sbjct: 63 -VTFVQNITDIDDKIIRRAAEN------GETIGQLTTRFIQYMHEDADALGIVRPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ LI + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 116 ATDYVPQMLDLIGKLEANGLAYQATDGDVNYSVRKFDGYGKLSGKSLEDLRAGERVTAND 175 Query: 184 HKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S P E W S WG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKSAKESEPPESKWNSKWGMGRPGWHIECSAMSCTLLGEHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI E+L + Sbjct: 236 QFPHHENEIAQSEGASG-KPFVNVWMHNGFVRVNDEKMSKSLGNFFTIREVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID------PA 350 + A V+R +L HYR P++++ L +A L++ T +D Sbjct: 288 EYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKDTQPGGYAVDWEEAHAKR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIEVCKEH-------- 400 A+ +D NT A+ L LA E + + A LG+ H Sbjct: 348 FAEAMCDDFNTPIAVSVLFDLASEVNRTGSSVAARQLKGLAGTLGLLERDPHTFLQGGKK 407 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ IE L+ R + F+ AD IR L + G +LED Sbjct: 408 VDGPSPDEIEGLIAARKTAKAERNFAEADRIRADLLAAGIVLED 451 >gi|16763917|ref|NP_459532.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179146|ref|YP_215563.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167990531|ref|ZP_02571631.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231534|ref|ZP_02656592.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261021|ref|ZP_02682994.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818841|ref|ZP_02830841.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194472796|ref|ZP_03078780.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251404|ref|YP_002145520.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205351838|ref|YP_002225639.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856015|ref|YP_002242666.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582374|ref|YP_002636172.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911333|ref|ZP_04655170.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|21264009|sp|Q8ZR68|SYC_SALTY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81309761|sp|Q57S29|SYC_SALCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710849|sp|B5EYD7|SYC_SALA4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710851|sp|B5R6X0|SYC_SALG2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558784|sp|B5QUV0|SYC_SALEP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781692|sp|C0PVI8|SYC_SALPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|16419048|gb|AAL19491.1| cysteine tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62126779|gb|AAX64482.1| cysteine tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194459160|gb|EDX47999.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215107|gb|ACH52504.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205271619|emb|CAR36445.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330830|gb|EDZ17594.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333999|gb|EDZ20763.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343946|gb|EDZ30710.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349964|gb|EDZ36595.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707818|emb|CAR32103.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466901|gb|ACN44731.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245816|emb|CBG23614.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992259|gb|ACY87144.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157145|emb|CBW16629.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911570|dbj|BAJ35544.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084812|emb|CBY94602.1| Cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226119|gb|EFX51170.1| Cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713608|gb|EFZ05179.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128857|gb|ADX16287.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987486|gb|AEF06469.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 461 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI----- 407 + +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 408 ---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|161504307|ref|YP_001571419.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|187631629|sp|A9MLA7|SYC_SALAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160865654|gb|ABX22277.1| hypothetical protein SARI_02415 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 461 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 268/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIEITRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSA 354 A +R ++ HYR ++++ + L +A E L + T S + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNK--------- 403 + +D NT A L +ARE K+ D+ ++H+ I L + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKSEDMTAANAMASHLRKISGVLGLLEQEPDAFLQSG 405 Query: 404 ----NISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +A IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|307729279|ref|YP_003906503.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1003] gi|307583814|gb|ADN57212.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1003] Length = 479 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 181/471 (38%), Positives = 258/471 (54%), Gaps = 47/471 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F ++P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 16 ESLRIYNTLARDKQTFVPLEPGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 75 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + Q +D L P + Sbjct: 76 Q--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIQALHEDADALGIARPDME 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + G+AY+A + ++ + YG S + +++ + G RV Sbjct: 128 PRATDFIPQMLGMIEKLEEKGYAYQAKDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 187 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK+S EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 188 NDAKEDPLDFVLWKQSKADEPADTGWDSRYGRGRPGWHIECSAMGCTLLGERFDIHGGGQ 247 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 248 DLQFPHHENEIAQSEAATG-QPFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 301 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L + T+ D A L Sbjct: 302 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALGRL-YTALKDVTPDGAALDWNEAH 358 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVCKEHLN 402 +A+ +D NT A+ L +LA E + D L A +LG E + +L Sbjct: 359 AQRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRSLGAVLGLLGRE-PRAYLQ 417 Query: 403 KNIS---------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + AIE + ER+ + K +++AD IR +L G LED Sbjct: 418 QAAGAAVQGALEPAAIEAKIAERVAAKQAKDYAAADRIRAELLEAGVALED 468 >gi|259500940|ref|ZP_05743842.1| cysteine-tRNA ligase [Lactobacillus iners DSM 13335] gi|302190608|ref|ZP_07266862.1| cysteinyl-tRNA synthetase [Lactobacillus iners AB-1] gi|259167634|gb|EEW52129.1| cysteine-tRNA ligase [Lactobacillus iners DSM 13335] Length = 470 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 181/477 (37%), Positives = 262/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLKQAEAVLKRYKNILRNIKERLSEKNDVSDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L KN HD + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLHDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|227873421|ref|ZP_03991676.1| cysteine--tRNA ligase [Oribacterium sinus F0268] gi|227840726|gb|EEJ51101.1| cysteine--tRNA ligase [Oribacterium sinus F0268] Length = 468 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 183/488 (37%), Positives = 257/488 (52%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF I+ IRMYVCGPTVY+ HIGNARPMIVFD R + Y + Sbjct: 1 MKIYNTMSKQKEEFVPIEEGKIRMYVCGPTVYNLIHIGNARPMIVFDTFRRFMEYKGYKV 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 C YV N TD+DDKII+ A E S IT + + KD + L + T P+ Sbjct: 61 C--YVSNYTDVDDKIIKTAMDEGTDC------SSITERYISEVEKDMSDLNIMEATAHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ LI ++ G AY + + +DT++ P+YG S + +++ + G R V Sbjct: 113 ATEEIQGMVNLIDVLVKKGFAYPVDGTVYYDTTAFPSYGKLSHKNMEDLRSGLRELKVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + KK+P DF+LWK EP W SPW GRPGWH EC M+ Y G DIH GG DL+ Sbjct: 173 EEEKKSPTDFVLWKPKKMGEPYWNSPWSEGRPGWHTECCVMAPKYCGGALDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ A E+ A W+HN F+N++ +KMSKS GNF T+ ++ T +F Sbjct: 233 FPHHENEIAQYEAA-HGEQFARYWMHNAFINIDNKKMSKSLGNFFTVRDV--TSQF---- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAE-----ILLSKW------------------- 337 V+R ML HYR P++F+ + A+ IL + W Sbjct: 286 -DPMVLRFYMLSAHYRSPLNFSKDLMEAAKTSLGRILTAIWRLQDLIPRLEEKAFSKEEE 344 Query: 338 PQTSTSKGIIDPAVLSA-LYNDLNTVSAIQALHKLAR--------ESTKNHD--LLPIFN 386 T++G A+ S + +DLNT AI + +L R S+K + LL Sbjct: 345 ENVKTAEGY--EAIFSEKMEDDLNTADAITQIFELVRLANATVEEHSSKAYGEALLQKLE 402 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI K+ + + +E L+Q+R K K F+ AD IR +L + G L+D + Sbjct: 403 TLMAVLGIRTEKKE--EELGAKVEALIQQRQDARKNKDFAKADQIRDELLAMGIQLKDTR 460 Query: 447 NPDNGQRM 454 N Q++ Sbjct: 461 NGVEWQKI 468 >gi|300704462|ref|YP_003746065.1| cysteine tRNA synthetase [Ralstonia solanacearum CFBP2957] gi|299072126|emb|CBJ43458.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Ralstonia solanacearum CFBP2957] Length = 465 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 177/476 (37%), Positives = 253/476 (53%), Gaps = 57/476 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-Y 61 + +KIYNTL R+ F I+ +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Y Sbjct: 2 ESLKIYNTLAREKQTFVPIESGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASGY 61 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G VTYVRNITDIDDKII+RA + + I +T + +D L P H Sbjct: 62 G---VTYVRNITDIDDKIIKRA------VENGETIGALTDRFIAAMHEDADALGVQRPDH 112 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT ++PQM+ +I + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 113 EPRATEYVPQMLSMIGKLQANGLAYQAADGDVNYAVRKFAGYGKLSGKSLEDLRAGERVA 172 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 173 ANDAKQDPLDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L+ Sbjct: 233 ADLQFPHHENEIAQAEGANG-NTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVLKV--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTS 343 + V+R +L +HYR ++++ L +A L++ P S S Sbjct: 289 ----YDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSES 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH------------DLLPIFNASAHI 391 G A+ +D NT A+ L +LA E K ++ + H Sbjct: 345 HG---QRFREAMNDDFNTPVAMAVLFELASEVNKTRSAALASQLAALGGVMGLLGRDPHA 401 Query: 392 L---GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G+ + L+ + +E ++ R + + F+ AD IR L + G +LED Sbjct: 402 FLQGGVGAAADGLD---TAEVEARIEARRVAKAARDFARADGIRADLLAAGIVLED 454 >gi|322386163|ref|ZP_08059796.1| cysteine--tRNA ligase [Streptococcus cristatus ATCC 51100] gi|321269743|gb|EFX52670.1| cysteine--tRNA ligase [Streptococcus cristatus ATCC 51100] Length = 447 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 176/468 (37%), Positives = 254/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGITS------QEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVEFMGDIIRFVEDLIDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKGIIDPAVL--- 352 V+R HYR+PI+FT + + +A L + P T ++ A L Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVYDAATNLKYLKNTYEQPFTGQAESAQLQAFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAKVKAALAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|254166931|ref|ZP_04873785.1| cysteinyl-tRNA synthetase [Aciduliprofundum boonei T469] gi|289596106|ref|YP_003482802.1| cysteinyl-tRNA synthetase [Aciduliprofundum boonei T469] gi|197624541|gb|EDY37102.1| cysteinyl-tRNA synthetase [Aciduliprofundum boonei T469] gi|289533893|gb|ADD08240.1| cysteinyl-tRNA synthetase [Aciduliprofundum boonei T469] Length = 455 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 250/465 (53%), Gaps = 41/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+TL + EF + + +YVCGPT YD+AHIG+ARP I+FD+ R L Y + Sbjct: 1 MKIYDTLSGEKKEFVPVHEGRVGIYVCGPTTYDYAHIGHARPAILFDIFRRFLEYMGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + NITD+DDKII +A E PI + ++++KD L P+ Sbjct: 60 -VILISNITDVDDKIINKA-NELGKDPIE-----MAHYYAREYLKDMDALRVRRANIIPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I LI+ ++ G+AYE+ ++ F +YG S RKI++ G RV Sbjct: 113 ATRHIEEIINLIKTLVDKGYAYESGGDVYFSVKKFKDYGKLSHRKIEDMLAGARVEVNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG GRPGWHIECSAMS +YLG DIHGGG DLIFPH Sbjct: 173 KRDPLDFALWKASKPGEPSWQSPWGSGRPGWHIECSAMSMNYLGPTLDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G + E KMSKS GN I + L + +PA Sbjct: 233 HENEIAQSEAATG-KPFSKYWMHVGLVRFEKEKMSKSIGNVFLIKDFL-------KKYPA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKG-------------IIDPA 350 V+RL L +HYR+P DF+ + + EA LL K W K ID Sbjct: 285 EVLRLMYLNSHYRKPYDFSEKNIEEALPLLEKIWSTYQILKNSAMQEEPSEEVIEEIDSV 344 Query: 351 ---VLSALYNDLNTVSAIQ---ALHKLARESTKNHDLLPIFN---ASAHILGIEVCKEHL 401 +++AL +D NT A++ + ARE K D L N I I ++ Sbjct: 345 RKKIIAALEDDFNTREAMKEYLSFINFARE-LKGGDALAALNFLKEMDEIFDILPRGDNE 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K S IE L+ R K K + ADYIR +LE G +ED K Sbjct: 404 GKE-SELIELLLNVRNEERKRKNYEIADYIRDELEKIGIKIEDTK 447 >gi|296113612|ref|YP_003627550.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis RH4] gi|295921307|gb|ADG61658.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis RH4] gi|326559609|gb|EGE10023.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 7169] gi|326565528|gb|EGE15699.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 12P80B1] gi|326567711|gb|EGE17817.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis BC1] gi|326568652|gb|EGE18723.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis BC7] gi|326568779|gb|EGE18849.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis BC8] gi|326575029|gb|EGE24958.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis O35E] Length = 480 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 187/494 (37%), Positives = 259/494 (52%), Gaps = 58/494 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++Y+TL F+ I I +YVCG TVYD+ H+G+AR M+ FDV+ R LR Sbjct: 8 QSQLQLYDTLSASKRPFKPIHAGQIGIYVCGMTVYDYCHMGHARVMVGFDVIVRWLRAIG 67 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII+RA + I+ +T + +D L C +P Sbjct: 68 YQ--VNYVRNITDIDDKIIQRAYDN------GETITELTDRFITAMHQDEQFLGCQSPNI 119 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 +PRAT HI M +LI ++ AY+ + ++ + PNYG S+R +D+ + G R Sbjct: 120 EPRATEHIENMQHLIDVLLTKNLAYQGSGGDVYYAIEKFPNYGKLSKRHVDDMQAGASER 179 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG+ FDIHGGG Sbjct: 180 VSTAEDKRHPFDFVLWKTAKPSEPHWQSPWGLGRPGWHIECSAMSTCCLGETFDIHGGGH 239 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI E+++ Sbjct: 240 DLQFPHHENEIAQSEGATG-KTYANHWMHMGFINIDGEKMSKSLGNFFTIREVVD----- 293 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---GIID------- 348 + IR +L +HYR P++F+ L E+ LS+ Q+ S G+I Sbjct: 294 --KFHPETIRFFLLSSHYRSPVNFSDTALKESHTALSRIYQSLKSAENFGVISIMPNAWE 351 Query: 349 ----PAVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFNASAHILGIE 395 A A+ +D NT A+ L + A E K A +L I Sbjct: 352 SEAGQAFAKAMNDDFNTPKAVSVLFSVVTEINRAMKAGEYQKATQEASTLKTLASVLNIA 411 Query: 396 VCKEH--LNKNIS--------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 H L NI I + +R K F+ AD IR +L +G LED Sbjct: 412 QSSPHEFLQANIGNKPDGLSDAEIANKIAQRQQAKAQKNFAKADAIRDELNRQGIELED- 470 Query: 446 KNPDNGQRMTRWKQ 459 G+ T W++ Sbjct: 471 -----GRMGTTWRR 479 >gi|160872079|ref|ZP_02062211.1| cysteinyl-tRNA synthetase [Rickettsiella grylli] gi|159120878|gb|EDP46216.1| cysteinyl-tRNA synthetase [Rickettsiella grylli] Length = 466 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 189/488 (38%), Positives = 266/488 (54%), Gaps = 55/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K F+ + + MYVCG TVYDF HIG+AR ++VFDV+ R L+ + Sbjct: 2 LKIYNTLTQKKEAFKPMIAKKVGMYVCGMTVYDFCHIGHARVVVVFDVILRYLKMQGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII+RA QE+ P +T + + +D RL L P +P+ Sbjct: 61 -VNYIRNITDIDDKIIKRA-QENNESPFE-----LTQRMIKAMHEDFNRLNTLPPNAEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+ I +I LIQ ++ +AY + N +I FD YG + + + + + G RV Sbjct: 114 ATDAIVYIIALIQRLVDKAYAYRSENGDICFDVKKFKTYGDLAHQNVQKLRRGLRVAVDI 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK++ EP WESPWG GRPGWHIECSAMS LG+ FDIHGGGLDL+FP Sbjct: 174 TKKDPLDFVLWKKAKSGEPSWESPWGPGRPGWHIECSAMSMAALGEHFDIHGGGLDLVFP 233 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HH+NEIAQS D+ K N WIH GF+ ++ +KMSKS GNF T+ ++L + + Sbjct: 234 HHQNEIAQSEGVTDK--KFVNTWIHVGFVQIDRQKMSKSLGNFFTLRDVL-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEI-----------LLSKWPQT---STSKGIID 348 PA V+R ++ +HYR PI ++++ L A+ L+ K PQ S Sbjct: 285 PAEVVRYFLISSHYRSPIQYSLENLQAAQAALQRLYTSLRGLVGKGPQKFVLEESSKEYQ 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLA------RESTKNHDL--LPIFNASAHILGI------ 394 A+ +D NT A+ L +LA RE+ H A +LGI Sbjct: 345 EKFEHAMNDDFNTPDALAILFELARRINRLRETNSKHAQRDANCLQYLASLLGILQQEPE 404 Query: 395 EVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + K + K+ + I L+ R K + AD IR +L + +LED Sbjct: 405 QFLKLNQEKDPHLVEKINGLMNARNHARAAKNWQEADRIRDELLALNIVLEDTTTG---- 460 Query: 453 RMTRWKQK 460 T+W++K Sbjct: 461 --TQWRRK 466 >gi|313114813|ref|ZP_07800313.1| cysteinyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622868|gb|EFQ06323.1| cysteinyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 465 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 185/473 (39%), Positives = 267/473 (56%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF P R+YVCGPTVY++ HIGNARP+IVFD L R L Y G K Sbjct: 1 MQIFNTLTRQKEEFVPQVPGEYRIYVCGPTVYNYIHIGNARPLIVFDTLRRYLEYR-GNK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDK+I++ ++E S+ + + +++KD L C PT QPR Sbjct: 60 -VFYVSNITDIDDKLIKKGQEEGTSM------KEVAQRFEAEYLKDAAGLNCKKPTVQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI Q++ +++++I GHAY A N ++ F S P YG S K+D+ + G R Sbjct: 113 ATEHIQQILDIVKDLIDSGHAYVAKNGDVYFRVKSDPEYGKLSHLKLDDLESGNRELRSQ 172 Query: 184 H----KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++PADF +WK + P EP WESP+G GRPGWHIECSAMS +LGK D+H GG D Sbjct: 173 MDDDLKEDPADFAVWKAAKPGEPAWESPYGMGRPGWHIECSAMSRTHLGKTIDLHCGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS CA+ E A W+HNGF+N++ +KMSKS NF T+ ++ + + Sbjct: 233 LIFPHHENEIAQSECANGCE-FARYWMHNGFINVDNQKMSKSLHNFFTVRDVADVYGY-- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------PQTSTSKGI 346 IR ML YR P+++TV + + L + T + + Sbjct: 290 -----EPIRYFMLTAGYRMPLNYTVDLIESCKNSLERLYTCRENLDFALTKDAFGTDETL 344 Query: 347 IDPAV------LSALYNDLNTVSAIQALHKLARE-----STKNHDLL----PIFNASAHI 391 + A +A+ +DLNT A+ A+ L +E + + D L F+ + Sbjct: 345 KEKAAEARTKFCTAMDDDLNTPDALAAVFDLVKEINTLSAVSSKDALQTAAAAFDEITGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ + + +LV++R K K +++AD IR QL G+ ++D Sbjct: 405 LGLLYNRK--KDEVPAEVTELVEKRAAAKKAKDWATADAIRAQLTELGWAVKD 455 >gi|323700147|ref|ZP_08112059.1| cysteinyl-tRNA synthetase [Desulfovibrio sp. ND132] gi|323460079|gb|EGB15944.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans ND132] Length = 485 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 184/484 (38%), Positives = 253/484 (52%), Gaps = 67/484 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL+R+ EF +++ MYVCG T YD HIG+AR +VFDVLYR L++ + Sbjct: 1 MRLYNTLKRRKEEFTPAHNNDVNMYVCGITAYDLCHIGHARSSVVFDVLYRYLKHEGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN TDIDDKII+RA + + S I K +F D RL P+ +P+ Sbjct: 60 -VNFIRNFTDIDDKIIKRANE------VGKEASEIAEKFIGEFYVDMDRLNIERPSVEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP+MI L Q +I GHAY + ++ F S YG S R IDE + G R+ Sbjct: 113 CTEHIPEMIALTQRLIDKGHAYATPSGDVYFKVRSFEGYGKLSGRNIDELESGARIAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWH+ECSAMS Y DIHGGG DL FP Sbjct: 173 EKEDPLDFALWKAAKPGEPFWESPWGKGRPGWHLECSAMSEKYADLPLDIHGGGQDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A + AN W+HNGF+ + KMSKS GNF TI ++L + Sbjct: 233 HHENEVAQSEAATG-KPFANYWVHNGFVQINSEKMSKSLGNFFTIRDILA-------KFL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA----------------EILLSKWPQTSTSKGII 347 +R +L HYR P+DF+ L EA E+ KW ++ + ++ Sbjct: 285 PETLRYFLLTMHYRSPLDFSFDALEEAEKGLKRIYSALNQIDEELARDKWKKSPFPEELV 344 Query: 348 ------DPAVLSALYNDLNTV-------SAIQALHKLA-----RESTKNHDLLPIFNAS- 388 + A+ +DLNT SAI+ ++A R+S DL A Sbjct: 345 KELDDLEKHFAEAMADDLNTAGALGHVFSAIRLAGRVAEDKNLRKSEGGRDLFARIKADM 404 Query: 389 ---AHILGI------EVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRK 433 A +LGI E E + + A + +L+ R K K F+ +D IR Sbjct: 405 ADWASVLGIFERKPAEFLLELRDSRAARAGIDPAKVRELLDARAQARKDKDFARSDAIRD 464 Query: 434 QLES 437 +L + Sbjct: 465 ELAA 468 >gi|261409541|ref|YP_003245782.1| cysteinyl-tRNA synthetase [Paenibacillus sp. Y412MC10] gi|261286004|gb|ACX67975.1| cysteinyl-tRNA synthetase [Paenibacillus sp. Y412MC10] Length = 468 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 183/492 (37%), Positives = 257/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F A +P +++YVCGPTVYD+ HIGNARPMI FDV+ R Y+ + Sbjct: 3 LQIYNTLTRMKETFVAQEPGKVKIYVCGPTVYDYIHIGNARPMIFFDVV----RAYFENQ 58 Query: 65 C--VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I +A Q ++P + K + +D L T Sbjct: 59 GNDVNYVVNFTDVDDKMIRKAEQTGTTVPE------VAEKFINAYYEDLDGLGIPRATLN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T+++ +I IQ +I AYE ++ + T +YG S++ +DE + G R+ Sbjct: 113 PRVTDNMESIIEFIQELIDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL F Sbjct: 173 KRKENPEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E+AQS + AN W+HNG++ + KMSKS GN + + EL E + Sbjct: 233 PHHECEVAQSEALTG-KPLANYWMHNGYIRINNEKMSKSLGNGVLVKELRE-------QY 284 Query: 303 PAPVIRLAMLMTHYREPIDF----------TVQRLTEAE---------ILLSKWPQTSTS 343 +R ML THYR P+++ +V+RL A + SK Q S Sbjct: 285 TKEAVRYFMLSTHYRNPLNYSDEVMEQAQNSVERLANAAANVEHRLGTAIGSKDDQVSQD 344 Query: 344 KGIIDPAVL----SALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNAS 388 AVL + +D NT AI A+ + A E+ + H++L FN Sbjct: 345 VADKISAVLVEFHEKMQDDFNTPDAITAMFQWASEANQLLKEASIPAADLHEVLRAFNEM 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +L + ++ + IE L+ ER+ K K ++ AD IR +L +G +LE Sbjct: 405 NGVL--RIVNNGTDELLDEEIEALIAERVEARKNKNWARADEIRDKLADEGIVLE----- 457 Query: 449 DNGQRMTRWKQK 460 D Q M RW++K Sbjct: 458 DTAQGM-RWRRK 468 >gi|329925602|ref|ZP_08280443.1| cysteine--tRNA ligase [Paenibacillus sp. HGF5] gi|328939731|gb|EGG36073.1| cysteine--tRNA ligase [Paenibacillus sp. HGF5] Length = 468 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 183/492 (37%), Positives = 257/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F A +P +++YVCGPTVYD+ HIGNARPMI FDV+ R Y+ + Sbjct: 3 LQIYNTLTRMKETFVAQEPGKVKIYVCGPTVYDYIHIGNARPMIFFDVV----RAYFENQ 58 Query: 65 C--VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I +A Q ++P + K + +D L T Sbjct: 59 GNDVNYVVNFTDVDDKMIRKAEQTGTTVPE------VAEKFINAYYEDLDGLGIPRATLN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T+++ +I IQ +I AYE ++ + T +YG S++ +DE + G R+ Sbjct: 113 PRVTDNMESIIEFIQELIDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL F Sbjct: 173 KRKENPEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E+AQS + AN W+HNG++ + KMSKS GN + + EL E + Sbjct: 233 PHHECEVAQSEALTG-KPLANYWMHNGYIRINNEKMSKSLGNGVLVKELRE-------QY 284 Query: 303 PAPVIRLAMLMTHYREPIDF----------TVQRLTEAE---------ILLSKWPQTSTS 343 +R ML THYR P+++ +V+RL A + SK Q S Sbjct: 285 TKEAVRYFMLSTHYRNPLNYSDEVMEQAQNSVERLANAAANVEHRLGTAIGSKDDQVSQD 344 Query: 344 KGIIDPAVL----SALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNAS 388 AVL + +D NT AI A+ + A E+ + H++L FN Sbjct: 345 VADKISAVLVEFHEKMQDDFNTPDAITAMFQWASEANQLLKEASIPAANLHEVLRAFNEM 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +L + ++ + IE L+ ER+ K K ++ AD IR +L +G +LE Sbjct: 405 NSVL--RIVNTGTDELLDEEIEALIAERVEARKNKNWARADEIRDKLADEGIVLE----- 457 Query: 449 DNGQRMTRWKQK 460 D Q M RW++K Sbjct: 458 DTAQGM-RWRRK 468 >gi|227329459|ref|ZP_03833483.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 461 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 181/485 (37%), Positives = 257/485 (52%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA I + +T++ + D L L P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A+N +++F + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGVLSRQDLDQLQAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSSCA-HDGSYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 +R ++ HYR ++++ L +A L + T+ D +V + Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALDR---LYTALRGTDASVAAHGGDEFEARF 342 Query: 354 --ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLN 402 A+ +D NT A L +ARE + + L + +LG +E E Sbjct: 343 REAMDDDFNTPEAYSVLFDMAREVNRLKTEDVQAANQLASALRKLSGVLGLLEQDPEQFL 402 Query: 403 KNISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +N + IE L+Q+R K ++ AD R +L G +LED G + T Sbjct: 403 QNGAQVDDEEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGT 456 Query: 456 RWKQK 460 W++K Sbjct: 457 IWRRK 461 >gi|257871414|ref|ZP_05651067.1| cysteinyl-tRNA synthetase [Enterococcus gallinarum EG2] gi|257805578|gb|EEV34400.1| cysteinyl-tRNA synthetase [Enterococcus gallinarum EG2] Length = 469 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 187/492 (38%), Positives = 267/492 (54%), Gaps = 63/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK FQ ++ ++MYVCGPTVY++ H+GN R ++ FD + R L Y E Sbjct: 2 IKIYNTLTRKKEVFQPLEQGRVKMYVCGPTVYNYIHVGNGRSVVSFDTIRRYLEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A++ S P I + + F KDT L T PR Sbjct: 61 -VDYVMNFTDVDDKIIRTAKELKTSAPE------IADRFIEAFNKDTAALNVQPATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 +HI +I IQ ++ G+AY ANN++ + T +YG S + IDE ++G R E+ Sbjct: 114 VMDHIEDIIAFIQVLVDKGYAYMANNDVYYRTRKFKHYGQLSDQSIDELEVGASQRTGEE 173 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKENEIAWDSPWGLGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + KT AN W+HNG++ + E KMSKS GNF+T++E+++ Sbjct: 234 FPHHENEIAQSEA--KTGKTFANYWMHNGYVTIGEEEEKMSKSLGNFVTVHEMVQ----- 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI--- 346 V+R + T YR PI ++ L EAE L K + ++ +G Sbjct: 287 --KIDPQVLRFFLATTQYRRPIKYSETTLKEAETNLQKLRTALENAQFRLQNSKEGFPEG 344 Query: 347 IDPAVLS--------ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI----FNA 387 D A+L+ + +D N + I +++LA+ ++ + +LL F Sbjct: 345 TDHAILAEFEQRFVQEMDDDFNAANGITVVYELAKWLNTYSESASIDIELLTAAVEKFKE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER+ + + F+ +D IR L+ KG ILED Sbjct: 405 WLAIFGIYFVGEEL---LDEEIEQLIEERIQARQARDFARSDEIRDVLKEKGIILEDTAQ 461 Query: 448 PDNGQRMTRWKQ 459 TRW++ Sbjct: 462 G------TRWRR 467 >gi|296101636|ref|YP_003611782.1| cysteinyl tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056095|gb|ADF60833.1| cysteinyl tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 461 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 183/482 (37%), Positives = 262/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 2 LKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRFL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 60 NLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIVEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F + P YGS SR+ +D+ + G RV Sbjct: 114 ATHHIHEIIDITEKLIARGHAYVADNGDVMFSVPTDPTYGSLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LGK FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGKHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHGGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGI-------IDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T K + + + Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVEAAGGEAFEARFVEV 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGI--------EVCK 398 + +D NT A L +ARE K+ D+ +AH +LG+ Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANALAAHLRKLSSVLGLLEQEPDAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+ RL + K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALINARLEARQAKDWAAADAARNRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|332365578|gb|EGJ43338.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1059] Length = 447 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 178/468 (38%), Positives = 251/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKKEGIT-PKE-----VADKYIAAFHEDVTALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVAKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D A L A + Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKEAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRNELAAQGIKLLDTK---DGVRWTR 446 >gi|330445515|ref|ZP_08309167.1| cysteinyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489706|dbj|GAA03664.1| cysteinyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 460 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 186/484 (38%), Positives = 268/484 (55%), Gaps = 53/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEAFTPIQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGEMHADFDALGMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A+N +++F+ S +YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIALCERLIERGFAYVASNGDVMFEVSKFEDYGRLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 +R ++ HYR ++++ + L +A L + TS +D +V + Sbjct: 286 PETVRYFLMSGHYRSQLNYSEENLKQARSALER---LYTSLRGLDTSVEAAGGEEFVARF 342 Query: 354 --ALYNDLNTVSAIQALHKLARE--STKNHDLLP--IFNAS----AHILGI------EVC 397 A+ +D NT A L +ARE K D+ + A A +LG+ Sbjct: 343 KEAMDDDFNTPEAYSVLFDMAREINRLKADDVAAASVLGARMRELADVLGLLSQEPETFL 402 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + ++ +A IE L+Q+RL K +++AD R +L + G ILED G + T Sbjct: 403 QGGAGEDDDVAEIEALIQQRLDARAAKDWAAADEARDKLMAMGIILED------GAQGTT 456 Query: 457 WKQK 460 W++K Sbjct: 457 WRRK 460 >gi|227112835|ref|ZP_03826491.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 461 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 181/485 (37%), Positives = 257/485 (52%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA I + +T++ + D L L P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A+N +++F + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGVLSRQDLDQLQAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSSCA-HDGSYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 +R ++ HYR ++++ L +A L + T+ D +V + Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALDR---LYTALRGTDASVAAHGGDEFEARF 342 Query: 354 --ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLN 402 A+ +D NT A L +ARE + + L + +LG +E E Sbjct: 343 REAMDDDFNTPEAYSVLFDMAREVNRLKTEDVQAANQLASALRKLSGVLGLLEQDPEQFL 402 Query: 403 KNISIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +N + IE L+Q+R K ++ AD R +L G +LED G + T Sbjct: 403 QNGAQVDDDEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGT 456 Query: 456 RWKQK 460 W++K Sbjct: 457 IWRRK 461 >gi|169335260|ref|ZP_02862453.1| hypothetical protein ANASTE_01668 [Anaerofustis stercorihominis DSM 17244] gi|169257998|gb|EDS71964.1| hypothetical protein ANASTE_01668 [Anaerofustis stercorihominis DSM 17244] Length = 468 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 176/474 (37%), Positives = 260/474 (54%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF I+ + MYVCGPTVY+F HIGNARP I+FD L R L Y G K Sbjct: 1 MKLYNTLTRKKEEFVPINEGEVNMYVCGPTVYNFFHIGNARPFIIFDTLRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII +A++EH + + K +++ D L T PR Sbjct: 60 -VNYVQNFTDIDDKIINKAKEEHTTSKA------VADKYIKEYFTDAKGLGIKEATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + I +I LI ++ +G+AY + + + S +YG S++ IDE G RV Sbjct: 113 VSECIGDIIDLISDLEKNGYAYNVDGNVYYRVSKFKDYGKLSKKPIDELISGARVEVNDE 172 Query: 185 KKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK+ E ++SPWG+GRPGWHIECSAMS YLG DIHGGG DLIFP Sbjct: 173 KESPLDFALWKKQKEDSEIAFDSPWGKGRPGWHIECSAMSRKYLGSTIDIHGGGEDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ + + ++HNG++N+ KMSKS GNF + ++ + + Sbjct: 233 HHENEIAQSEGANG-KDFVHYFVHNGYININNEKMSKSKGNFFMVRDI-------SKDFD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIIDPA------------ 350 V+RL ML HY+ P++F+ L + + L++ T + ++D A Sbjct: 285 LEVVRLFMLSAHYKTPVNFSFDILKQTQSGLNRLYNTKENLLYLLDKAKDKDLKEDEKEF 344 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 +A+ +D+NT +A+ ++ L+++ N + ++ Sbjct: 345 INSLPKYREEFKNAMEDDINTANAVSTIYDLSKDINSNVNENSSKEMIMKSYEMYMELNG 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + KE ++ + I +L+++R K K F+ AD IR L KG +LED Sbjct: 405 VLGL-LTKEKEDEILEDEIIELIEKRQNARKNKDFALADKIRDDLLDKGIVLED 457 >gi|269217196|ref|ZP_06161050.1| cysteine--tRNA ligase [Slackia exigua ATCC 700122] gi|269129333|gb|EEZ60418.1| cysteine--tRNA ligase [Slackia exigua ATCC 700122] Length = 503 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 180/503 (35%), Positives = 257/503 (51%), Gaps = 79/503 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T +F ++ IRMYVCGPTVY++ HIGNAR I FDV+ R L + + Sbjct: 4 IRLYDTQSHAKRDFHPVEEGKIRMYVCGPTVYNYIHIGNARTFISFDVIRRYLMWRGFD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TD+DDKII++A +E S + + ++ T+ F+ D L P +PR Sbjct: 63 -VTFVQNVTDVDDKIIKKANEEGRSA------AEVAAEYTEAFIADMHAAGVLDPDIRPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT I MI L+ ++ GHAYE ++ F S P YG+ S R +D+ + G R Sbjct: 116 ATEEIDAMIDLVGRLVDAGHAYEVEGDVYFGVRSFPAYGALSNRNVDDLEGGHRELRADG 175 Query: 182 ---KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++ DF +WK + P EP W+SPWG+GRPGWHIECSAMS YLG DIHGGG Sbjct: 176 QGLEGRKRDELDFAVWKAAKPGEPSWDSPWGKGRPGWHIECSAMSRMYLGLPLDIHGGGS 235 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A E N W+H G L + KMSKS GNF+ + ++L+T Sbjct: 236 DLVFPHHENEIAQSEAA-YGETFCNYWMHGGMLQINQEKMSKSLGNFLLLRDVLKTTD-- 292 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------W----PQTSTSKG 345 A V+R+ ML THYR P+DF +RL EA L + W P G Sbjct: 293 -----ARVLRMLMLQTHYRSPLDFNDERLDEAASSLERVENFIDRMDWLVKHPVEGEGIG 347 Query: 346 I---------IDPAVLSALYNDLNTVSAIQALHK--------LARESTKNHDLLPIFNAS 388 + ++A+ +D NT A+ AL L S D+ +A Sbjct: 348 TQAFSVPLQALREGFVAAMDDDFNTAGALGALFSCINDVNAALGTASLGRGDIEAASDAR 407 Query: 389 AHIL------GIEVCKEHLN---------------------KNISIAIEKLVQERLILLK 421 ++ GI+V + + A+E L++ R Sbjct: 408 DAVVELFGVFGIDVPGRATDAQDAYPAEVVALAREIASFEGDDAQAAVEALLETRAQARA 467 Query: 422 MKKFSSADYIRKQLESKGFILED 444 K ++ AD +R + + GF++ED Sbjct: 468 SKMWAVADAVRDGMGALGFVIED 490 >gi|238916434|ref|YP_002929951.1| cysteinyl-tRNA synthetase [Eubacterium eligens ATCC 27750] gi|259511832|sp|C4Z3N5|SYC_EUBE2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|238871794|gb|ACR71504.1| cysteinyl-tRNA synthetase [Eubacterium eligens ATCC 27750] Length = 472 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 188/496 (37%), Positives = 260/496 (52%), Gaps = 69/496 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ ++ ++MYVCGPTVY+ HIGNARPMIVFD + R L Y + Sbjct: 1 MRIYNTLSRRKEEFKPLEEGKVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+++ + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVSA------EEISTRYIAECKKDMEGMNIKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------ 178 AT I MI +IQ +I G+AYE N + + T YG S++ ID+ + G R Sbjct: 113 ATQEIGGMIDMIQTLIDKGYAYEVNGTVYYRTRKFAEYGKLSKKNIDDLEAGHRDEAHSL 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 V + K++P DF+LWK EP W SPW GRPGWHIECS MS YL DIH GG Sbjct: 173 KVTGEDEKEDPLDFVLWKPKKEGEPSWPSPWSDGRPGWHIECSVMSKKYLADEIDIHAGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENEIAQS A+ + + W+HN FLN++ +KMSKS GNF T+ ++ Sbjct: 233 EDLIFPHHENEIAQSEAANGV-PFSKYWMHNAFLNIDNKKMSKSLGNFFTVRDI------ 285 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------QT 340 R + V+R ML HYR P++F+ + A+ L + T Sbjct: 286 -SREYDLEVLRFFMLSAHYRNPVNFSHDLMESAKNGLDRILTAVDNLRHLSENAKDVIMT 344 Query: 341 STSKGIIDPAVLSALY--------NDLNTVSAIQALHKLARESTKN----------HDLL 382 K II A + +Y +D NT AI A+ +L + + N L+ Sbjct: 345 EDEKKII--ASIDDIYKKFEDSMDDDFNTADAISAIFELVKLANSNSSSDNSKEYIDTLM 402 Query: 383 PIFNASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ILG++ K E L+++ IE L+ ER K K F+ AD IR +L +KG Sbjct: 403 KKITTLTDILGLKTDKKEEMLDED----IEALIAERQQARKDKNFARADEIRDELLAKGI 458 Query: 441 ILEDYKNPDNGQRMTR 456 +L+D + G R +R Sbjct: 459 VLKDTR---EGVRWSR 471 >gi|182683526|ref|YP_001835273.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] gi|303253920|ref|ZP_07340041.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS455] gi|303260086|ref|ZP_07346059.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|303261270|ref|ZP_07347218.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|303263935|ref|ZP_07349856.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS397] gi|303265926|ref|ZP_07351822.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|303268308|ref|ZP_07354105.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|182628860|gb|ACB89808.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] gi|301801464|emb|CBW34156.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae INV200] gi|302599096|gb|EFL66121.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS455] gi|302637404|gb|EFL67891.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|302638781|gb|EFL69243.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|302642146|gb|EFL72496.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|302644510|gb|EFL74761.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|302646340|gb|EFL76566.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS397] Length = 447 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 183/469 (39%), Positives = 256/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ + Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|309781263|ref|ZP_07676000.1| cysteine--tRNA ligase [Ralstonia sp. 5_7_47FAA] gi|308920084|gb|EFP65744.1| cysteine--tRNA ligase [Ralstonia sp. 5_7_47FAA] Length = 463 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 185/468 (39%), Positives = 264/468 (56%), Gaps = 43/468 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + +S +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETMSALTGRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGRLQTNGLAYQATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG+ FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKAEEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS A KT N W+HNGF+ + KMSKS GNF TI ++L+ Sbjct: 234 DLQFPHHENEIAQSEGA--TGKTFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVLKL--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA 350 + A V+R +L +HYR ++++ L +A L++ P + +K + + Sbjct: 289 ----YDAEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAAGAKPDWNES 344 Query: 351 ----VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH--LN 402 L A+ +D NT A+ L +LA E T++ L A A +LG+ H L Sbjct: 345 HGKRFLEAMNDDFNTPVAVSVLFELASEVNKTRSPALASQLAALAGVLGLLGRDPHAFLQ 404 Query: 403 KNIS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +S +E ++ER + F+ AD IR L + G +LED Sbjct: 405 GGVSPDGLDAAEVEARIEERRAAKAARDFARADAIRADLLAAGIVLED 452 >gi|322377813|ref|ZP_08052302.1| cysteine--tRNA ligase [Streptococcus sp. M334] gi|321281236|gb|EFX58247.1| cysteine--tRNA ligase [Streptococcus sp. M334] Length = 447 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 254/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 -LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDAQELQTFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + + + GI +E L+ Sbjct: 345 FVAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALASMLEVFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|322374782|ref|ZP_08049296.1| cysteine--tRNA ligase [Streptococcus sp. C300] gi|321280282|gb|EFX57321.1| cysteine--tRNA ligase [Streptococcus sp. C300] Length = 447 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 254/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIID--------PA 350 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 -LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDIQELQDFKDK 344 Query: 351 VLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + I + ++A+ ++ N+D + A + GI +E L+ Sbjct: 345 FVAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IETLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|331266879|ref|YP_004326509.1| cysteinyl-tRNA synthetase [Streptococcus oralis Uo5] gi|326683551|emb|CBZ01169.1| cysteinyl-tRNA synthetase [Streptococcus oralis Uo5] Length = 447 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 179/469 (38%), Positives = 256/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKTAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN WIHNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWIHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS--KWPQTSTSKGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L K G +D L Sbjct: 286 -IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKITYEQPFTGNVDTQELQDFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ D N+ + I + ++A+ ++ N+D + A + GI +E L+ + Sbjct: 345 FVAAMDEDFNSANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|168067577|ref|XP_001785689.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662678|gb|EDQ49502.1| predicted protein [Physcomitrella patens subsp. patens] Length = 491 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 154/316 (48%), Positives = 202/316 (63%), Gaps = 21/316 (6%) Query: 18 FQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77 FQ I P + MYVCG T YD++HIG+AR + FDVL+R L+ + VTYVRN TDIDD Sbjct: 8 FQPIVPGKVSMYVCGVTTYDYSHIGHARVYVAFDVLFRYLKSVGYD--VTYVRNFTDIDD 65 Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KII+RA E P+N ++ + +F D L CL P +PR ++HIPQ+I +I Sbjct: 66 KIIKRA-NEVGEDPLN-----LSRRFCDEFQVDMELLRCLPPNVEPRVSDHIPQIIKMIS 119 Query: 138 NIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR 196 II + + Y ++ F+ ++P YG S RK +E + G RV K+NPADF LWK Sbjct: 120 QIIENKNGYVMEGGDVYFEVDTLPTYGCLSGRKQEENRAGERVLVDNRKRNPADFALWKS 179 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC--C 254 + P EP W+SPWG GRPGWHIECSAMS+ +LG FDIHGGG+DLIFPHHENEIAQSC C Sbjct: 180 AKPGEPAWDSPWGPGRPGWHIECSAMSAEHLGHKFDIHGGGMDLIFPHHENEIAQSCAAC 239 Query: 255 ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 AD W+HNGF+ ++ KMSKS GNF TI E+LE + +R +L T Sbjct: 240 AD---SRVGYWLHNGFVTVDNEKMSKSVGNFFTIREVLEL-------YHPLALRWFLLGT 289 Query: 315 HYREPIDFTVQRLTEA 330 HYR P++++ ++L A Sbjct: 290 HYRAPVNYSKRQLEVA 305 >gi|299533876|ref|ZP_07047243.1| cysteinyl-tRNA synthetase [Comamonas testosteroni S44] gi|298718160|gb|EFI59150.1| cysteinyl-tRNA synthetase [Comamonas testosteroni S44] Length = 461 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 256/468 (54%), Gaps = 50/468 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + F ++P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR G K Sbjct: 3 LRIYNTLSRALESFSPLEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRAS-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + +D L PT +PR Sbjct: 62 -VTYVRNITDIDDKIIKRA------VENGETIRSLTDRMIDALHQDADALGIERPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV Sbjct: 115 ATEYVPQMLGMIARLQDKGLAYQAGNGDVNYAVRKFPGYGKLSGKSLDELNAGERVAVAD 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + EP W+SP+G GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKHDPLDFVLWKSAKADEPADVRWQSPFGEGRPGWHIECSAMGCELLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPFARTWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A IR ++ +HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 EYDAETIRFFVVRSHYRSPLNYSNVHLDDARGALKR---LYTALDLVTPAEVQIDWSNPY 343 Query: 353 -----SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILG---------IEV 396 +A+ D T A+ L +LA E +K+ ++ + A LG ++ Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSPEVAGLLKALGACLGLLQAEPQKFLQA 403 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E ++ A E K ++ AD IRK+L +G +L+D Sbjct: 404 GAEGVDAAAIEAQIAARAE---AKATKNWAEADRIRKELLDQGIVLKD 448 >gi|226531133|ref|NP_001146887.1| LOC100280495 [Zea mays] gi|195604736|gb|ACG24198.1| cysteinyl-tRNA synthetase [Zea mays] Length = 556 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 150/324 (46%), Positives = 202/324 (62%), Gaps = 16/324 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++N+L ++ FQ + MYVCG T YDF+HIG+AR + FDVLYR L++ E Sbjct: 32 QLVLFNSLTKREEPFQPRVEGKVGMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKFLGYE 91 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + + ++ ++S+ +F+ D T L CL PT +P Sbjct: 92 --VEYVRNFTDIDDKIIKRANER------GETVTSLSSRFINEFLLDMTELQCLPPTCEP 143 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T HI +I LI I+ + AY ++ F S P Y S S RK D+ + G RV Sbjct: 144 RVTEHIEHIIELITKIMENDKAYAMEGDVYFSVESFPEYLSLSGRKFDQNQAGARVAFDT 203 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP W+SPWGRGRPGWHIECSAMS+HYLG +FDIHGGG DLIFP Sbjct: 204 RKRNPADFALWKAAKEGEPFWDSPWGRGRPGWHIECSAMSAHYLGHLFDIHGGGKDLIFP 263 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A E W+HNGF+N + +KM+KS+ NF TI ++ + Sbjct: 264 HHENELAQSRAA-YPESEVKCWMHNGFVNKDDKKMAKSDNNFFTIRDITAL-------YH 315 Query: 304 APVIRLAMLMTHYREPIDFTVQRL 327 +R ++ THYR ++ + Q L Sbjct: 316 PLALRFFLMRTHYRSDVNHSDQAL 339 >gi|303327042|ref|ZP_07357484.1| cysteine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] gi|302863030|gb|EFL85962.1| cysteine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] Length = 483 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 191/491 (38%), Positives = 253/491 (51%), Gaps = 69/491 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF + P + MYVCG T YD+ HIG+AR +VFD L R LR+ E Sbjct: 1 MQIYNTLGRQKEEFIPVRPGKVHMYVCGITAYDYCHIGHARSALVFDALVRHLRHLGLE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII RA +E + F +D RL L +PR Sbjct: 60 -VTFVRNFTDVDDKIINRANKE------GRDWQEVAQTYIDAFHEDMDRLGVLRADLEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQ+ L +I G AY + ++ F S P YG S R +DE G RV Sbjct: 113 ATEYIPQIQELCAKLIAEGTAYATPSGDVYFRVRSYPPYGKLSGRSLDELLSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAMSS YL DIHGGG DL+FP Sbjct: 173 EKEDPLDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSSPYL--PLDIHGGGQDLVFP 230 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS R E A W+HNGF+ + KMSKS GNF TI ++L S+ Sbjct: 231 HHENEIAQSEAVCRCE-LARYWVHNGFVQVNAEKMSKSLGNFKTIRDILG-------SYL 282 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----------------ILLSKWPQT------S 341 +R +L HYR PIDFT + + EAE + + W +T S Sbjct: 283 PETLRFFLLGKHYRSPIDFTAEGMDEAEKAQHRVYSSLMEARKALERASWKKTPLPAELS 342 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQAL------------HKLARESTKNHDLLPIFNASA 389 + A +AL +DLNT A+ + K R + DLL F A A Sbjct: 343 AEWAALPQAFEAALDDDLNTAQALGQIFSQVRIVNRLLEEKNLRAAESTRDLLEDFLARA 402 Query: 390 H-------ILG---IEVCKE-----HLNKNISI-AIEKLVQERLILLKMKKFSSADYIRK 433 + G +E E KN+ + +E L+++R + K F+ +D +R+ Sbjct: 403 RDWDAQLGLFGRDPVEFLTELRAMRAARKNLDMDRVEDLLRQRREVRMQKDFTRSDALRR 462 Query: 434 QLESKGFILED 444 +L G + D Sbjct: 463 ELLDLGVNVRD 473 >gi|332970727|gb|EGK09707.1| cysteine--tRNA ligase [Desmospora sp. 8437] Length = 462 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 254/487 (52%), Gaps = 58/487 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 ++NT RK+ F+ + MYVCGPTVY++ HIGNAR + FDV+ R LRY + V Sbjct: 1 MFNTQTRKLEPFRPQHDRKVAMYVCGPTVYNYIHIGNARVFVFFDVVRRYLRYKGYD--V 58 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV+N TD+DD++IE A++E N + + + + + D L P+AT Sbjct: 59 TYVQNFTDVDDRLIESAKRE------NTTVKELAERYIRAYFDDMDALGVQRADVHPKAT 112 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HIP+M I +I G+AYE ++ + +YG S + ++E G RV K+ Sbjct: 113 EHIPEMQEAILTLIDKGYAYEREGDVYYRALRKEDYGKLSGQSVEELNAGARVEVNEKKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 P DF LWK++ P E WESPWGRGRPGWHIECSAMS YLG D+H GG+DL FPHHE Sbjct: 173 TPLDFALWKKAKPGEISWESPWGRGRPGWHIECSAMSRKYLGDTLDVHAGGMDLCFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS + W+HNG++N+ KMSKS GN + ++EL E + Sbjct: 233 NEIAQSEAWTE-KPFVRYWLHNGYINMGNEKMSKSLGNVVRVHELRE-------QYAPRA 284 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVL----- 352 +R +L HYR PI F+ + + + E L ++ T+ +G +P V Sbjct: 285 LRYFLLSAHYRNPISFSHEAIRQIEGSLERFDTAVTNLHHRMGAAQEGEAEPEVRERLAS 344 Query: 353 ------SALYNDLNTVSAIQALH---KLARESTKNHDLLP----------IFNASAHILG 393 +A+ +DLNT + I LH K A E T ++P I ILG Sbjct: 345 LTGEFEAAMDDDLNTANGISVLHEAVKFANE-TVARSVVPKGSLAMLLDWIHRFGGEILG 403 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + E +++ IE L++ER + F AD IR +L ++G ILED P Sbjct: 404 LVTAGE--EDSLAGEIEALIEERQQARAARDFKRADAIRDRLAAQGIILED--TPQG--- 456 Query: 454 MTRWKQK 460 RW++K Sbjct: 457 -VRWRRK 462 >gi|255083368|ref|XP_002504670.1| cysteine-trna ligase [Micromonas sp. RCC299] gi|226519938|gb|ACO65928.1| cysteine-trna ligase [Micromonas sp. RCC299] Length = 522 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/412 (41%), Positives = 227/412 (55%), Gaps = 62/412 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRY 59 + + ++NT+ R+ F D + + MYVCG TVYD++HIG+AR + FDVLYR L R Sbjct: 8 QTLMLHNTMARRKEPFSPRDSTGKKVNMYVCGVTVYDYSHIGHARVYVAFDVLYRQLTRM 67 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 Y VTY RN TD+DDKII+RA + + + + F +D L CL P Sbjct: 68 GYD---VTYCRNFTDVDDKIIKRANEN------GEECDALVDRFIAAFHEDIDALGCLRP 118 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 T +PRAT+HI ++ + + +I G+AY A+ ++ F ++P YGS S RK ++ + G RV Sbjct: 119 TIEPRATDHIKDIVTMCERLIEKGYAYPADGDVYFSVDALPEYGSLSGRKQEDNRAGERV 178 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LGK DIHGGG D Sbjct: 179 AVDDRKKNPADFALWKAAKPGEPTWDSPWGAGRPGWHIECSAMIDSILGKSIDIHGGGQD 238 Query: 240 LIFPHHENEIAQS-----CCA----DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 L+FPHHENE+AQS CCA + E W+HNGF+ ++ KMSKS GNF TI E Sbjct: 239 LVFPHHENELAQSTASCRCCATDGDEPEEPFVRYWVHNGFVKVDSEKMSKSLGNFFTIRE 298 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL---------------- 334 + E + +R +L THYR PI++T + L EA L Sbjct: 299 VTE-------KYHPFALRWMLLGTHYRAPINYTQRALEEASDRLYYLYQTLVDSRVALTE 351 Query: 335 -------------SKWPQTSTSKGI-----IDPAVLSALYNDLNTVSAIQAL 368 K P ++GI AV SAL +DLNT A+ +L Sbjct: 352 AEASATDAEVKGKPKPPTGVAAEGIELAVETKAAVASALTDDLNTPLAMASL 403 >gi|53719852|ref|YP_108838.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|53723757|ref|YP_103282.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|67642953|ref|ZP_00441703.1| cysteine--tRNA ligase [Burkholderia mallei GB8 horse 4] gi|76809388|ref|YP_334067.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121599658|ref|YP_993471.1| cysteinyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124385862|ref|YP_001029097.1| cysteinyl-tRNA synthetase [Burkholderia mallei NCTC 10229] gi|126441734|ref|YP_001059571.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 668] gi|126449503|ref|YP_001080979.1| cysteinyl-tRNA synthetase [Burkholderia mallei NCTC 10247] gi|126452065|ref|YP_001066849.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|134277835|ref|ZP_01764550.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|167001797|ref|ZP_02267589.1| cysteine--tRNA ligase [Burkholderia mallei PRL-20] gi|167720284|ref|ZP_02403520.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei DM98] gi|167739281|ref|ZP_02412055.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 14] gi|167816497|ref|ZP_02448177.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 91] gi|167830172|ref|ZP_02461643.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 9] gi|167846407|ref|ZP_02471915.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei B7210] gi|167894988|ref|ZP_02482390.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 7894] gi|167903372|ref|ZP_02490577.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177] gi|167916840|ref|ZP_02503931.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 112] gi|167919625|ref|ZP_02506716.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei BCC215] gi|217420917|ref|ZP_03452422.1| cysteine--tRNA ligase [Burkholderia pseudomallei 576] gi|226198973|ref|ZP_03794536.1| cysteine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|237812906|ref|YP_002897357.1| cysteine--tRNA ligase [Burkholderia pseudomallei MSHR346] gi|242315930|ref|ZP_04814946.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|254178125|ref|ZP_04884780.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|254184417|ref|ZP_04891007.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|254191450|ref|ZP_04897954.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|254197349|ref|ZP_04903771.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|254200234|ref|ZP_04906600.1| cysteinyl-tRNA synthetase [Burkholderia mallei FMH] gi|254209314|ref|ZP_04915660.1| cysteinyl-tRNA synthetase [Burkholderia mallei JHU] gi|254258938|ref|ZP_04949992.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1710a] gi|254297083|ref|ZP_04964536.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|254358017|ref|ZP_04974290.1| cysteinyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|61216158|sp|Q62J37|SYC_BURMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216161|sp|Q63SS8|SYC_BURPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894887|sp|Q3JQT6|SYC_BURP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200132|sp|A3ML43|SYC_BURM7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200133|sp|A2SAX8|SYC_BURM9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200134|sp|A1V5G8|SYC_BURMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200135|sp|A3NWX8|SYC_BURP0 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200136|sp|A3NB50|SYC_BURP6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52210266|emb|CAH36245.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|52427180|gb|AAU47773.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|76578841|gb|ABA48316.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121228468|gb|ABM50986.1| cysteinyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124293882|gb|ABN03151.1| cysteine--tRNA ligase [Burkholderia mallei NCTC 10229] gi|126221227|gb|ABN84733.1| cysteine--tRNA ligase [Burkholderia pseudomallei 668] gi|126225707|gb|ABN89247.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|126242373|gb|ABO05466.1| cysteine--tRNA ligase [Burkholderia mallei NCTC 10247] gi|134251485|gb|EBA51564.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|147749830|gb|EDK56904.1| cysteinyl-tRNA synthetase [Burkholderia mallei FMH] gi|147750087|gb|EDK57158.1| cysteinyl-tRNA synthetase [Burkholderia mallei JHU] gi|148027144|gb|EDK85165.1| cysteinyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|157807476|gb|EDO84646.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|157939122|gb|EDO94792.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|160699164|gb|EDP89134.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|169654090|gb|EDS86783.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|184214948|gb|EDU11991.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|217396329|gb|EEC36346.1| cysteine--tRNA ligase [Burkholderia pseudomallei 576] gi|225929073|gb|EEH25097.1| cysteine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|237504389|gb|ACQ96707.1| cysteine--tRNA ligase [Burkholderia pseudomallei MSHR346] gi|238524180|gb|EEP87614.1| cysteine--tRNA ligase [Burkholderia mallei GB8 horse 4] gi|242139169|gb|EES25571.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|243062482|gb|EES44668.1| cysteine--tRNA ligase [Burkholderia mallei PRL-20] gi|254217627|gb|EET07011.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1710a] Length = 465 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 183/472 (38%), Positives = 255/472 (54%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R +F P +RMYVCG TVYD+ HIG+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRAR-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + T D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIQSLTRRFTDAMNADFDALGVERPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATEFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFANYGRLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P EP WES +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ D L Sbjct: 288 --KFDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRL-YTALKDATPDAQPLDWSEAH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC------KEHL 401 +A+ +D NT A+ L +LA E + + P +L + +E L Sbjct: 345 AQRFAAAMNDDFNTAVAVAVLFELATEVNRTRE--PALARQLRLLAGLLGLLGREPREFL 402 Query: 402 NKNISIA---------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QHAAGAARTGALEPHEIEARIAARVAAKQAKNYAEADRIRAELLEAGIALED 454 >gi|322833979|ref|YP_004214006.1| cysteinyl-tRNA synthetase [Rahnella sp. Y9602] gi|321169180|gb|ADW74879.1| cysteinyl-tRNA synthetase [Rahnella sp. Y9602] Length = 463 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 185/484 (38%), Positives = 260/484 (53%), Gaps = 50/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + +T + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRAAEN------GETFMALTDRMIAEMHADFASLNILPPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT HI ++I ++Q +I HAY A+N +++F S P+YG SR+ +D+ + G RV E Sbjct: 114 ATQHIHEIIDIVQKLIDRDHAYVASNGDVMFWVESDPDYGLLSRQDLDQLQAGARVEVEA 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+F Sbjct: 174 NVKRNPMDFVLWKMSKPGEPSWTSPWGEGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 PHHENEIAQSSCA-HDGPYVNTWMHSGMVMIDREKMSKSLDNFFTVRDVL-------KYY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLS 353 A +R ++ HYR ++++ + L A + + + + PA + Sbjct: 286 DAESVRYFLMSGHYRSQLNYSEENLKLARTSMERLYTALRGTDAAATPAGGEAFVTRFRA 345 Query: 354 ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILG-IEVCKEHLNKN 404 A+ +D NT A L +AR+ K DL +A +LG +E E K+ Sbjct: 346 AMDDDFNTPEAYSVLFDMARDINRLKTEDLSAANGLAAELRQLAGVLGLLEQDPEQFLKS 405 Query: 405 ISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + A IE L+++R K + AD R +L G +LED G T Sbjct: 406 GAQADNDDEVAEIEALIKQRNDARASKDWGMADKARDRLNEMGIVLED------GAAGTT 459 Query: 457 WKQK 460 W++K Sbjct: 460 WRRK 463 >gi|148980442|ref|ZP_01816064.1| cysteinyl-tRNA synthetase [Vibrionales bacterium SWAT-3] gi|145961245|gb|EDK26558.1| cysteinyl-tRNA synthetase [Vibrionales bacterium SWAT-3] Length = 461 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 183/484 (37%), Positives = 263/484 (54%), Gaps = 52/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIIELVEKLIERGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF++WK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVVWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI +LL + Sbjct: 234 HHENEIAQSCCAHGTDYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDLLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA--------VL 352 A +R ++ HYR ++++ L +A L + ++ +G+ PA Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERL--YTSLRGLDLTAAPAGGEEYVTRFS 343 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE-------VC 397 +A+ +D NT A L ++ARE K L + A I+GI + Sbjct: 344 TAMNDDFNTPEAYSVLFEMAREINRIKTESIEKASGLGALMRELADIIGILHQDPEAFLQ 403 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + + +A IE L++ R K +++AD R +L G +LED G T Sbjct: 404 GDAAGNDDEVAEIEALIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTT 457 Query: 457 WKQK 460 W++K Sbjct: 458 WRRK 461 >gi|332365783|gb|EGJ43540.1| cysteine--tRNA ligase [Streptococcus sanguinis SK355] Length = 447 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 175/468 (37%), Positives = 250/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR I FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEGGKVKMYVCGPTVYNYIHVGNARSTIAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DD+II RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDRIINRAKEEGIT-PKE-----VADKYIAAFREDVTALGVKLATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +A L T G D A L Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVAFELAKWINSGNYTAEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|313887550|ref|ZP_07821233.1| cysteine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846428|gb|EFR33806.1| cysteine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 465 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 189/489 (38%), Positives = 258/489 (52%), Gaps = 59/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK +F I + +Y CGPTVY+F H+GNARP++VFD L R Y G K Sbjct: 1 MKLYNTLTRKKEDFVPIKEGEVGIYNCGPTVYNFIHVGNARPLVVFDTLRRYFDYK-GMK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDK+I +A E + S I + ++F KD L T P Sbjct: 60 -VKFVVNFTDIDDKMINKANDEGVKV------SDIAERYIKEFKKDAGGLHLYDYETINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI ++I IQ +I G AY +N ++ FD S +YG S++ +++ G RV Sbjct: 113 RATEHIDEIIDFIQTLIDKGAAYVSNGDVYFDISHAKDYGKLSKKNLEDLISGHRVDVND 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF LWK EP W++PWG GRPGWHIECS M+ +G DIH GG DL FP Sbjct: 173 NKKNPQDFALWKNKKEGEPYWQAPWGEGRPGWHIECSVMAKTIIGDNIDIHTGGEDLQFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + AN W+HNG + ++ KMSKS GNF T+ E+ E + Sbjct: 233 HHENEIAQSETCNGV-PFANYWLHNGMITVDNEKMSKSKGNFFTVREISE-------EFD 284 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKW-PQTSTSKGIIDPAVL 352 V+R +L T YR PI+F + +RL A+ L +TS K + L Sbjct: 285 LEVLRFFLLTTQYRSPINFSREVMEQTKNSSKRLYNAKYKLEDAIEKTSVEKMTEEEENL 344 Query: 353 ------------SALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 A+ +DLNT AI A+ L ++ N D L + Sbjct: 345 LKGYDKHIEKFEKAMEDDLNTADAITAIFDLVKDINLNLDENSSKEVLEKSLELLKKLTK 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI E + IS IE+L++ER K K F+ AD IR +L++ G +ED ++ Sbjct: 405 VLGI---MEEEREEISGDIEELIKERNEARKNKDFTRADEIRDELKNMGIEIEDTRSG-- 459 Query: 451 GQRMTRWKQ 459 T WK+ Sbjct: 460 ----TTWKR 464 >gi|332076428|gb|EGI86891.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA41301] Length = 447 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 181/468 (38%), Positives = 252/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + ++A+ ++ N+D + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|302390937|ref|YP_003826757.1| cysteinyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] gi|302203014|gb|ADL11692.1| cysteinyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] Length = 481 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 181/487 (37%), Positives = 260/487 (53%), Gaps = 65/487 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL +K EF+ +D +++Y CGPTVYD+ HIGNAR I+ D+L R L Y Sbjct: 3 LQIYNTLTQKKEEFEPLDQDEVKLYSCGPTVYDYFHIGNARAFILPDILKRYLEY--KGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+RA +E I + + + +DT RL P+ Sbjct: 61 NVLHVTNFTDVDDKMIKRANEEEIEI------EELADRFITAYFEDTERLNIKQADVYPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I L++ + G+AYE + ++ F +YG S ++++E G+RV Sbjct: 115 ATEHISDIIELVKKLEDKGYAYEVDGDVFFAVRKFADYGKLSNQELEELTSGSRVEVNDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK+S EP WESPWG GRPGWHIECSAMS YLG+ FD H GG+DL+FPH Sbjct: 175 KEDPLDFVLWKKSKEGEPSWESPWGTGRPGWHIECSAMSMCYLGEEFDFHTGGVDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + N W+HNG++N++G KMSKS GNF T ++L + + A Sbjct: 235 HENEIAQN-EAGVGSQVVNYWLHNGYINVDGEKMSKSLGNFFTTRDIL-------QDYSA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIID--------------- 348 V+R ++ HYR PI+F+ L A L + T K ++D Sbjct: 287 EVLRFFLISKHYRSPINFSDAELDNAAKSLQRLQNTVNKLKDLLDRDRADLKPGNKEELQ 346 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLAREST-------------------KNH 379 A+ +DLNT AI ALH+LA+E K + Sbjct: 347 ELEKKIKAKREKFEEAMDDDLNTALAIGALHELAKELNIVVNDADFELNQANIIVLEKAY 406 Query: 380 DLLPIFNASAHILGIEV-CKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 D S +LGI + ++ ++ N+ S I L++ R + + + AD IR +L Sbjct: 407 DTFK--ELSQQVLGINLETEDDISDNLTSDLIGLLLEVRNKARQNQDWELADQIRDELSE 464 Query: 438 KGFILED 444 G ILED Sbjct: 465 LGIILED 471 >gi|308234253|ref|ZP_07664990.1| cysteinyl-tRNA synthetase [Atopobium vaginae DSM 15829] gi|328943535|ref|ZP_08241000.1| cysteine--tRNA ligase [Atopobium vaginae DSM 15829] gi|327491504|gb|EGF23278.1| cysteine--tRNA ligase [Atopobium vaginae DSM 15829] Length = 490 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 184/497 (37%), Positives = 263/497 (52%), Gaps = 73/497 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYN+ K EF ++P+ +RMYVCGPTVYD HIGNAR + FD++ R L+Y V Sbjct: 3 IYNSKTHKKEEFIPLEPNRVRMYVCGPTVYDQIHIGNARTFLSFDIIRRYLQYK--GFAV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 + +N+TD+DDKII RA ++ S + + F++ R L P +PRAT Sbjct: 61 VFAQNLTDVDDKIINRANEQGISA------DELAKTYSCAFIEQMHRFGILDPDIRPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 I M +IQ +I GHAY A+N ++ F S NYG S R++D+ + G R+ K Sbjct: 115 AEIEHMQVMIQILIDKGHAYVADNGDVYFSVRSDHNYGVVSGRQLDDMRAGERIEVNDAK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + P EP W+SPWG+GRPGWH EC AM YLG DIHGGG DL+FPHH Sbjct: 175 RDPFDFVLWKAAKPSEPSWDSPWGKGRPGWHTECCAMIHRYLGTPIDIHGGGQDLMFPHH 234 Query: 246 ENEIAQSCCA-DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 ENE AQ+ CA D+ AN W+H G L ++G KMSKS GNF T+ E+L+ ++PA Sbjct: 235 ENENAQASCAWDK--PLANYWMHAGMLRVDGEKMSKSLGNFYTLKEVLD-------AYPA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WP--QTSTSKGI------- 346 +RL ML THYR P+DF+ +RL A L K W Q+ S + Sbjct: 286 DAVRLLMLQTHYRAPLDFSFERLNGARGTLQKLIGCVENLRWSAEQSGESGALGKAEQAL 345 Query: 347 ---IDPAVL---SALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNAS----- 388 +D A + + + +D N A+ A+ L + K + + P+ + Sbjct: 346 GNAVDHAQIEFETQMDDDFNAAGALAAIFNLMAHANKYLEEAGAHPCVAPMLRCADMLCE 405 Query: 389 -AHILGIEVCKE--HLNKNISIAIEKLVQE---------RLILLKM------KKFSSADY 430 +LGI + + L I +K+ Q+ RL+++ K ++ AD Sbjct: 406 LCSVLGITLAAKTSELPAEIIDLAQKVTQQSASSCEEAARLLIMARAEARSNKDWTRADA 465 Query: 431 IRKQLESKGFILEDYKN 447 IR + G ++ED N Sbjct: 466 IRDGIAELGLMVEDTAN 482 >gi|160943774|ref|ZP_02091005.1| hypothetical protein FAEPRAM212_01272 [Faecalibacterium prausnitzii M21/2] gi|158444948|gb|EDP21951.1| hypothetical protein FAEPRAM212_01272 [Faecalibacterium prausnitzii M21/2] gi|295104011|emb|CBL01555.1| cysteinyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3] Length = 465 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 188/474 (39%), Positives = 267/474 (56%), Gaps = 53/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF P R+YVCGPTVY++ HIGNARP+IVFD L R L Y G K Sbjct: 1 MQIFNTLTRQKEEFVPQVPGEYRIYVCGPTVYNYIHIGNARPLIVFDTLRRYLEYR-GNK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDK+I++ ++E S+ + + +++KD L C PT QPR Sbjct: 60 -VIYVSNITDIDDKLIKKGQEEGTSM------KEVAQRFEAEYLKDAAGLNCEKPTVQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---- 179 AT HIPQ++ +++++I GHAY A N ++ F S P YG S +D+ + G R Sbjct: 113 ATEHIPQILDIVKDLIDSGHAYVAKNGDVYFRVKSDPGYGKLSHLNLDDLESGNRELRSR 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++PADF +WK + P EP WESP+G GRPGWHIECSAMS +LGK D+H GG D Sbjct: 173 MEDDLKEDPADFAVWKAAKPGEPAWESPYGMGRPGWHIECSAMSRTHLGKTIDLHCGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS CA+ E A W+HNGF+N++ +KMSKS NF T+ ++ + Sbjct: 233 LIFPHHENEIAQSECANGCE-FARYWMHNGFINVDNQKMSKSLHNFFTVRDVANLYGY-- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWPQTSTSKG 345 IR ML YR P+++TV + + LSK T + Sbjct: 290 -----EPIRYFMLTAGYRMPLNYTVDLIESCKNSLERLYTCRENLDFALSK-TDFGTDET 343 Query: 346 IIDPAV------LSALYNDLNTVSAIQALHKLARE-------STK--NHDLLPIFNASAH 390 + + A +A+ +DLNT A+ A+ L +E S+K F+ Sbjct: 344 LKEKAAEARTKFCTAMDDDLNTPDALAAVFDLVKEINTLSAASSKAALETAAAAFDEITG 403 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ ++ + + +LV++R K K +++AD IR QL G+ ++D Sbjct: 404 VLGLLYNRK--KDEVPAEVTELVEKRAAAKKAKDWATADAIRAQLTELGWAVKD 455 >gi|303244169|ref|ZP_07330507.1| cysteinyl-tRNA synthetase [Methanothermococcus okinawensis IH1] gi|302485554|gb|EFL48480.1| cysteinyl-tRNA synthetase [Methanothermococcus okinawensis IH1] Length = 476 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 187/481 (38%), Positives = 260/481 (54%), Gaps = 56/481 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K EF +ID ++MYVCGPTVYD+AH+G+ R +VFD + R L + Sbjct: 1 MKIYNTLTKKKEEFNSIDEHEVKMYVCGPTVYDYAHLGHGRTYVVFDTIRRYLEH--KNY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA +E +IP + + K + F++D +L PR Sbjct: 59 IVKLVINFTDIDDKIIKRANEE--NIPPTE----LADKFIKSFLEDMEKLNIKPAYVYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HI +I I+ +I G+AY A++ I FD +YG S +DE + G R+ Sbjct: 113 VSEHIKDIIRFIEVLIKKGYAYVADDGIYFDVRKFKDYGKLSNINLDEIRTGYRIETNLT 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG GRP WHIECSAM YLG+ FDIHGGG DLIFPH Sbjct: 173 KRNPEDFALWKFAKPNEPKWDSPWGEGRPAWHIECSAMGIKYLGEQFDIHGGGNDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + WIH GF+ ++ KMSKS GNF+ + +LL+ F Sbjct: 233 HENEIAQSEVYTDKKPWVKYWIHTGFVMMDKEKMSKSLGNFVELKDLLDKYDF------- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------------ST 342 VIRL +L HYR P+D++ + L +A+I L K T T Sbjct: 286 EVIRLFLLQRHYRSPLDYSEEGLLDAKISLEKLYNTLKNIDAICRNSHVKHKLNEIDIKT 345 Query: 343 SKGIIDPAV--LSALYNDLNTVSAIQ-------ALHKLARESTK-NHDLLPIFNASAHIL 392 + I + + +A+ +D NT A++ ++K ES N LL + N ++ Sbjct: 346 YETIKNAWINFYNAMDDDFNTPEALKYVFEVSSVINKYMNESNNPNKSLLIMTNEFFKMI 405 Query: 393 G--------IEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 G I K + +KN+ I+ L+ R L + K + AD IR +L++ G LE Sbjct: 406 GEIFGIFHNIINNKNNEDKNMEGHLIDILINIRAKLKEEKNYKLADEIRSELKNIGIQLE 465 Query: 444 D 444 D Sbjct: 466 D 466 >gi|187924487|ref|YP_001896129.1| cysteinyl-tRNA synthetase [Burkholderia phytofirmans PsJN] gi|187715681|gb|ACD16905.1| cysteinyl-tRNA synthetase [Burkholderia phytofirmans PsJN] Length = 465 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 178/470 (37%), Positives = 255/470 (54%), Gaps = 45/470 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQEGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIRRA------VENGETIKALTDRFIDALHEDADALGIQRPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A++ ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEQLEANGYAYQASDGDVNYAVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPDEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNFWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L++ T+ D A L Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALARL-YTALKDVTPDAAELDWNEAH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIE------- 395 +A+ +D NT A+ L +LA E + D L A +LG E Sbjct: 345 AQRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRSLGAVIGLLGREPRAYLQQ 404 Query: 396 -VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 AIE + R+ + K +++AD IR +L G LED Sbjct: 405 AAGAAAEGALEPAAIEAKIAARVAAKQAKDYAAADRIRAELLEAGVALED 454 >gi|157150688|ref|YP_001449668.1| cysteinyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|157075482|gb|ABV10165.1| cysteinyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] Length = 447 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 174/468 (37%), Positives = 255/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I +++++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVEFMADIIRFVEDLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTCQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIID------PAV 351 V+R HYR+PI+FT + + +A + L + + Q T + D Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSDQLQDFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKTAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|161830739|ref|YP_001597327.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 331] gi|187629808|sp|A9N924|SYC_COXBR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|161762606|gb|ABX78248.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 331] Length = 458 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 178/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L ++ F+ I+ +++YVCG TVYD+ HIG+ R I+FD++ R LR E Sbjct: 1 MKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RA + S + + + Q +D L L+P +PR Sbjct: 60 -VTFVRNITDIDDKIIKRAGENKESP------AALAERFIQILHEDEKALRVLSPDQEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P++I LIQ ++ + +AY N ++ FD +YG S R +D+ + G RV Sbjct: 113 ATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDKLQAGARVEVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGGLDL FP Sbjct: 173 SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + +W+H G L + KMSKS GN I+I E L+ Sbjct: 233 HHENEIAQSEAGEE-KPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESD------- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS--------AL 355 V+R +L HYR P+ ++ + L + L ++ +++ S A+ Sbjct: 285 VEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAM 344 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNAS---------AHILGI-----EVCKEHL 401 +D NT A L ++ RE + D I A+ +I G+ E + Sbjct: 345 DDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA 404 Query: 402 NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K + I+KL+ +R K + +AD IR QL G +ED + T W+Q+ Sbjct: 405 KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG------TSWRQE 458 >gi|15900500|ref|NP_345104.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] gi|111657664|ref|ZP_01408394.1| hypothetical protein SpneT_02001141 [Streptococcus pneumoniae TIGR4] gi|149005703|ref|ZP_01829442.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|149021553|ref|ZP_01835608.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|168490519|ref|ZP_02714662.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] gi|168576506|ref|ZP_02722380.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|225858428|ref|YP_002739938.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 70585] gi|225860592|ref|YP_002742101.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|298230928|ref|ZP_06964609.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254670|ref|ZP_06978256.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502386|ref|YP_003724326.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A] gi|307126794|ref|YP_003878825.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] gi|21264019|sp|Q97S25|SYC_STRPN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|14972066|gb|AAK74744.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] gi|147762643|gb|EDK69603.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|147930249|gb|EDK81234.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|183575011|gb|EDT95539.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] gi|183577730|gb|EDT98258.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|225720814|gb|ACO16668.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 70585] gi|225728330|gb|ACO24181.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|298237981|gb|ADI69112.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A] gi|306483856|gb|ADM90725.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] gi|327390330|gb|EGE88671.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA04375] gi|332077024|gb|EGI87486.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA17545] Length = 447 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 183/469 (39%), Positives = 255/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|301793788|emb|CBW36177.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae INV104] gi|332204613|gb|EGJ18678.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA47901] Length = 447 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 182/469 (38%), Positives = 253/469 (53%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++ +I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEGLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|304385485|ref|ZP_07367830.1| cysteine--tRNA ligase [Pediococcus acidilactici DSM 20284] gi|304328692|gb|EFL95913.1| cysteine--tRNA ligase [Pediococcus acidilactici DSM 20284] Length = 472 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 181/492 (36%), Positives = 259/492 (52%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT+ R F+ + + MYVCGPTVY++ HIGNAR +I FD + R L Y + Sbjct: 2 IKLYNTMTRSKEVFKPLVDQQVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A+ E+ ++P + + F +D L T PR Sbjct: 61 -VRFVSNFTDVDDKMIKAAQAENITVPE------LAERYIAAFKEDVQALNVEPATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I +I + ++I +AY + + NYG+ S + IDE + G Sbjct: 114 ATENITDIIAFVADLIEKDYAYVVEGNVYYRARRFKNYGALSHQNIDELEQGASQHINDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W++PWG+GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETMQKEDPIDFALWKAAKPGEIAWKAPWGKGRPGWHIECSVMSTKYLGDTFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS ++ A W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 QFPHHENEIAQSEARTGVQ-FARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA 350 + V+R M T YR+PI +T L +A+ L K T+ G DPA Sbjct: 287 -KQVNPQVLRFLMSTTQYRKPIQYTETSLQDAKNNLEKLQNAYVNLNYRLQTANGAADPA 345 Query: 351 V-----------LSALYNDLNTVSAIQALHKLAR-------ESTKNHD----LLPIFNAS 388 V ++A+ +D N + I +++ AR ++T NH+ L F Sbjct: 346 VDQQAAALQADFVAAMDDDFNAQNGITVVYEFARLINVYSEQATVNHEQIARLAKQFAEM 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A I GIE+ IE LV++R + F ++D +R QL+ G ILED P Sbjct: 406 AAIFGIELATA-TEAPADEKIEALVKQRDAARAARDFETSDRLRDQLKEMGIILED--TP 462 Query: 449 DNGQRMTRWKQK 460 TRW++K Sbjct: 463 QG----TRWRKK 470 >gi|147676630|ref|YP_001210845.1| cysteinyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] gi|187629838|sp|A5D5M0|SYC_PELTS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146272727|dbj|BAF58476.1| cysteinyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] Length = 484 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 182/505 (36%), Positives = 260/505 (51%), Gaps = 71/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ FQ +P + MYVCGPT Y++ H+GNARP++ FD + R L + E Sbjct: 1 MEIYNTLTRRKENFQPREPGRVCMYVCGPTTYNYIHLGNARPLVFFDTVRRYLIHKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII RA++E D + + ++ KD L P Sbjct: 60 -VLFVQNFTDVDDKIINRAQEE------GDDPLALARRYIGEYFKDADALNVRRADRHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HIP +I ++ ++ G AY + + F+ YG S R +++ + G RV Sbjct: 113 VSEHIPDIIKMVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG GRPGWHIECSAMS YLG FDIHGGG DLIFPH Sbjct: 173 KRDPLDFALWKAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+ + KMSKS GNF + ++L +P Sbjct: 233 HENEIAQSEAATG-QPFVRYWMHNGFITVNEEKMSKSLGNFFLVRDILA-------KFPP 284 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI-------- 346 ++R +L THYR P+DF ++R+ + LL + + S+G+ Sbjct: 285 ELVRFFLLSTHYRSPLDFDGEKMAAAGRGLERIKTSLRLLYEALERPVSEGVQAVCSRDP 344 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLARE----------STKNHD------LLPIFNA 387 I + +A+ +D NT AI A+ LARE + D L +FN Sbjct: 345 FDEIRASFEAAMDDDFNTALAIGAVFDLAREANTAVQRTGPAVSGQDRQILQYALDLFNE 404 Query: 388 SAHILGI--------EVCKEHLNKNISIAIEKLV----QERLILLKMKKFSSADYIRKQL 435 +LGI + + + S +E L+ + R K K +S+AD IR L Sbjct: 405 FNEVLGIFKVDGASGRLLIDGAAGDDSGLVEGLINLILEVRQEARKRKDWSTADRIRDGL 464 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 + G +LED P RWK++ Sbjct: 465 KELGILLED--TPQG----VRWKKQ 483 >gi|209695403|ref|YP_002263332.1| cysteinyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] gi|226710839|sp|B6EH43|SYC_ALISL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|208009355|emb|CAQ79625.1| cysteinyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] Length = 462 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 180/485 (37%), Positives = 269/485 (55%), Gaps = 53/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVISRYLRFLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + N++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------NESCEALTERLIAEMHADFDALKMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP--E 181 AT +I +++ L++ +I G AY A+N +++F+ YG SR+ +++ + G+RV E Sbjct: 114 ATEYITEIVELVERLIERGFAYVASNGDVMFEVKKFDEYGRLSRQDLEQLQAGSRVTLEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 174 TSVKRSGMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLM 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA K N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDA-KYVNTWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA-------- 350 + + +R ++ HYR ++++ + L +A L + ++ +G+ + PA Sbjct: 286 YDSETVRYFLMSGHYRSQLNYSEENLNQARSSLERL--YTSLRGLDLTVTPAGGETFVTR 343 Query: 351 VLSALYNDLNTVSAIQALHKLARE----STKN----HDLLPIFNASAHILGIE------- 395 +A+ +D NT A L ++ARE T+N L + A +LG+ Sbjct: 344 FSTAMNDDFNTPEAYSVLFEMAREVNRLKTENIEAASKLGALMRELAEVLGLLSQEPEAF 403 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + + N IE L++ R K +S+AD R + + +LED G T Sbjct: 404 LQGDSGSDNEVAEIEALIKARNDARAAKDWSAADAARDAITALNIVLED------GPEGT 457 Query: 456 RWKQK 460 W++K Sbjct: 458 TWRRK 462 >gi|255659332|ref|ZP_05404741.1| cysteine--tRNA ligase [Mitsuokella multacida DSM 20544] gi|260848414|gb|EEX68421.1| cysteine--tRNA ligase [Mitsuokella multacida DSM 20544] Length = 477 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 178/498 (35%), Positives = 259/498 (52%), Gaps = 66/498 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ R+ EF+ + P + +Y CG T Y+ HIGNARP + +DV+ R Y+ +K Sbjct: 2 LKVYNTMTRRKEEFKPLKPGEVSIYCCGVTPYNHPHIGNARPFVTWDVIRR----YFAKK 57 Query: 65 C--VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TD+DDKII A +E + D I+ + + + + L Sbjct: 58 GYKVHYIQNFTDVDDKIINAANKE--GVTWKD----ISDRYIKAYFEAMDALNVRHADVY 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR + +P++I ++Q +I G+AY +N ++ + +YG S R +D+ + G R+ Sbjct: 112 PRVSETMPEIIAMVQKLIDKGYAYVIDNGDVYYSVEKFSHYGKLSGRSLDDMQAGARIEV 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K +P DF LWK + P EP W+SPWG+GRPGWHIECS MS YLGK FD HGGG DLI Sbjct: 172 NTAKHHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSTMSLKYLGKKFDFHGGGSDLI 231 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS C A W+HNGF+ + KMSKS NF T+ ++L + Sbjct: 232 FPHHENEIAQSQACIGDDHSFAQYWLHNGFITIHNEKMSKSKNNFFTVKDIL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDP---- 349 +P VIR +L THYR P+DF+ +RL EA+ L + T S +G D Sbjct: 285 EYPGEVIRFFILQTHYRSPLDFSDERLKEAQTSLGRLQNTKAYVDELSAKQGESDTAAEL 344 Query: 350 ---------AVLSALYNDLNTVSAIQALHKLARE----------STKNHD------LLPI 384 A A+ +D NT AI + L+++ TK D + + Sbjct: 345 AAKAEELRKAFYEAMDDDFNTALAISQMFALSKDINIYYQEVVNGTKAFDAADFKKVAAV 404 Query: 385 FNASAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + A I+GI +E + + +E ++ R K K ++ AD IR L+ G + Sbjct: 405 YAEMAEIIGIFEQQEKAAADDGLTDKLMEIIITLRQDARKEKNWAVADKIRDALKDAGVV 464 Query: 442 LEDYKNPDNGQRMTRWKQ 459 LED P RWK+ Sbjct: 465 LED--TPSG----VRWKK 476 >gi|322390880|ref|ZP_08064388.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 903] gi|321142393|gb|EFX37863.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 903] Length = 447 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 250/466 (53%), Gaps = 35/466 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMEDIIRFVADLIEKGYAYESQGDVYFRVEKSNNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +DPA L Sbjct: 288 ---GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFAGEVDPADLQNFVDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 +A+ D+N + I + +LA+ H + +A A +L + + + IE Sbjct: 345 FIAAMDEDINAANGITVVFELAKWINSGHYNQDVKDALAKML-EVFGVVFVEEVLDADIE 403 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+ ER K F+ AD IR +L ++G L D K G R TR Sbjct: 404 ALIAERQEARAKKDFARADAIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|15902563|ref|NP_358113.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116517189|ref|YP_816017.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae D39] gi|30316153|sp|Q8DQS8|SYC_STRR6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15458093|gb|AAK99323.1| Cysteinyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116077765|gb|ABJ55485.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae D39] Length = 447 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 183/469 (39%), Positives = 254/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIERGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|315649724|ref|ZP_07902808.1| cysteinyl-tRNA synthetase [Paenibacillus vortex V453] gi|315274912|gb|EFU38288.1| cysteinyl-tRNA synthetase [Paenibacillus vortex V453] Length = 468 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 179/492 (36%), Positives = 258/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F A + +++YVCGPTVYD+ HIGNARPMI FDV+ R Y+ + Sbjct: 3 LQIYNTLTRMKETFVAQESGKVKIYVCGPTVYDYIHIGNARPMIFFDVV----RAYFENQ 58 Query: 65 C--VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V+YV N TD+DDK+I +A Q ++P + K Q + +D L T Sbjct: 59 GNDVSYVVNFTDVDDKMIRKAEQTGTTVPE------VADKFIQAYYEDLDGLGIPRATLN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T+++ +I IQ ++ AYE ++ + T +YG S++ +DE + G R+ Sbjct: 113 PRVTDNMENIIEFIQELVDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL F Sbjct: 173 KRKENPEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E+AQS + AN W+HNG++ + KMSKS GN + + EL E + Sbjct: 233 PHHECEVAQSEALTG-KPLANYWMHNGYIRINNEKMSKSLGNGVLVKELRE-------QY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID------ 348 +R ML THYR P++++ + + +A+ + + ST+ G D Sbjct: 285 TKEAVRYFMLSTHYRNPLNYSDEVMDQAQNSVERLANAAANIEHRLSTAIGSKDDEVSQE 344 Query: 349 -----PAVLSALY----NDLNTVSAIQALHKLARESTK-----------NHDLLPIFNAS 388 AVL + +D NT AI A+ + A E+ + H++L FN Sbjct: 345 VAGKISAVLGEFHQKMQDDFNTPDAITAMFQWASEANQLLKEASIPAADLHEVLRAFNEM 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +L + + IE L+ ER+ K K ++ AD IR +L +G +LE Sbjct: 405 NGVL--RIVNTGTGDLLDEEIEALIAERIEARKNKNWARADEIRDKLADEGIVLE----- 457 Query: 449 DNGQRMTRWKQK 460 D Q M RW++K Sbjct: 458 DTAQGM-RWRRK 468 >gi|94676564|ref|YP_588592.1| cysteinyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123081502|sp|Q1LTX2|SYC_BAUCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|94219714|gb|ABF13873.1| cysteinyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 462 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 182/466 (39%), Positives = 263/466 (56%), Gaps = 42/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL K F+ I + +YVCG T YD HIG+ R + FDV+ R LRY E Sbjct: 2 LAIFNTLTNKKEIFKPIHIGKVALYVCGVTAYDLCHIGHVRTFVTFDVVIRYLRYCGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDI+DKII +A ++ +T + + D L L P +PR Sbjct: 61 -VNYIRNITDIEDKIIRKAANN------GESCQQLTDRMIAEMHHDLDLLNILRPDKEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L + +I HAY A+N +++F S NYG S + +++ ++G RV Sbjct: 114 ATQHIKEIIQLTRQLIDKEHAYIASNGDVMFAIESANNYGILSSQNLNQLQIGQRVKITT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAMS YLGK FDIHGGG DLIFP Sbjct: 174 VKRNPMDFVLWKMSKHGEPTWSSPWGNGRPGWHIECSAMSIKYLGKHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS C + N W+H+G + + KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSTCMEN-NPYVNFWMHSGMVTICNEKMSKSLSNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL-SKWPQTSTSKGIIDPA--------VLSA 354 A +R ++ +HYR+P++++ + L A L S + +K + P+ + A Sbjct: 286 AETVRYFLISSHYRKPLNYSEKSLQLARTALKSLYIALRNTKKEVIPSGGEYFIEQFMMA 345 Query: 355 LYNDLNTVSA----IQALHKLARESTKN----HDLLPIFNASAHILGI-----EVC--KE 399 + ND NT +A Q H++ R TKN + A+ILG+ EV K+ Sbjct: 346 MNNDFNTPAAHAVLFQLAHEVNRLKTKNIKSAQGMAATLRYLANILGLLEQDPEVFLQKQ 405 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +++IA IE+LV++R + K ++ AD +R++L + G +LED Sbjct: 406 KIVTDLNIALIEELVKQRNNIRKKHQWVQADKVREKLAAMGIVLED 451 >gi|149376716|ref|ZP_01894474.1| cysteinyl-tRNA synthetase [Marinobacter algicola DG893] gi|149358955|gb|EDM47421.1| cysteinyl-tRNA synthetase [Marinobacter algicola DG893] Length = 436 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 248/451 (54%), Gaps = 41/451 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD+ H+G+AR ++ FDV+ R LR+ + V YVRNITDIDDKI+ RA + Sbjct: 1 MYVCGMTVYDYCHLGHARVLVAFDVITRYLRHSGYD--VHYVRNITDIDDKILRRADEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + S +T + + +D +L L+PT +P AT++I ++ +I ++ GHAY Sbjct: 58 -----GEVYSDLTQRMIKAMHEDEAKLGVLSPTEEPCATDYINDIVAMIHKLVSGGHAYA 112 Query: 148 ANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A+N ++ F S +YG S++K+++ G RV + K++PADF+LWK + E W S Sbjct: 113 ADNGDVYFSVESYSDYGKLSKKKLEDLVAGARVDVQEAKRSPADFVLWKAAKEGEVSWPS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAMS+ LG+ FDIHGGG DL+FPHHENEIAQS CA+ N W+ Sbjct: 173 PWGDGRPGWHIECSAMSNRCLGETFDIHGGGPDLLFPHHENEIAQSECANG-HTFVNTWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H G + + KMSKS GNF TI E+ E + V+R ++ +HYR +D++ Sbjct: 232 HAGAIRVNKEKMSKSLGNFFTIREIFE-------KYAPEVVRYFLVSSHYRSQVDYSEDN 284 Query: 327 LTEAEILLSKW--------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE---- 374 L EA L++ P + ++ D A+ +D NT A LH +A E Sbjct: 285 LAEAGRTLTRLYHALRGLVPAKNVAETEHDQRFAEAMDDDFNTAGATAVLHAVANEINLH 344 Query: 375 -----STKNHDLLPIFNASAHILGI------EVCKEHLNKNISIA-IEKLVQERLILLKM 422 K ++ + +LG+ + +S I ++Q R K Sbjct: 345 RREGRDEKANEQAAVLVRLGGVLGLLQQDPEAFFQADTGGELSADDIAAMIQARADARKQ 404 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 K F+ AD IR +L KG IL+D + + +R Sbjct: 405 KDFAEADRIRDELADKGVILDDSREGTSWRR 435 >gi|307131980|ref|YP_003883996.1| cysteinyl-tRNA synthetase [Dickeya dadantii 3937] gi|306529509|gb|ADM99439.1| cysteinyl-tRNA synthetase [Dickeya dadantii 3937] Length = 461 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 185/482 (38%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I+ +T + + D L P +PR Sbjct: 61 -VKYVRNITDIDDKIIKRATEN------GETITQLTDRMIGEMHTDFDALNIQRPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I ++I L++ +I HAY ANN +++F + P YG+ SR+ +++ K G RV Sbjct: 114 ATHYIAEIIELVEQLIARRHAYVANNGDVMFSVDTAPGYGALSRQDLEQLKAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGE-YVNYWMHTGMVMVDREKMSKSLNNFFTMRDVL-------MHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A IR ++ HYR +++T + L +A L + ++ + A Sbjct: 286 AETIRYFLISGHYRSQLNYTEENLKQARASLERLYTALRGTDAAASAAGGDAFESRFRDA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNAS------AHILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D + A +LG +E E ++ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDAAAANGLAAALRRLAGVLGLLEQDPELFLQSG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+++R + K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVQEIEALIKQRNDARQSKDWALADAARNRLTEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|311896844|dbj|BAJ29252.1| putative cysteinyl-tRNA synthetase [Kitasatospora setae KM-6054] Length = 464 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 169/472 (35%), Positives = 257/472 (54%), Gaps = 51/472 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T+ R++ +F + P + +Y+CG TV HIG+ R + FDV+ R RY + Sbjct: 2 SLRLYDTMTRQVRDFVPLVPGCVSIYLCGATVQAPPHIGHIRSGLNFDVMQRWFRYRGYD 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDK+I + R++ I S N + F + L CL P+ +P Sbjct: 62 --VTFVRNVTDIDDKVIAKGREQSTDW------WKIASANERAFSEGYAALGCLPPSVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+P+MI +++ +I GHAY A+ + F ++ P+Y S ++++ + E Sbjct: 114 RATGHVPEMIEMMRGLIERGHAYAADGNVYFAVTTFPDYLELSNQELENLRQPAGDNET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGGLDLIFP Sbjct: 173 GKRDPRDFAMWKAVKPGEPSWETPWGRGRPGWHLECSAMAHKYLGRAFDIHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + AN W+HN ++ L G KMSKS GN + ++E++ R W Sbjct: 233 HHENEIAQSRAYG--DDFANFWVHNAWVTLAGEKMSKSLGNSVLVSEMV-------RRWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK-GIID------PAVLS 353 V+R + HYR I+++ + L EAE ++ + + + + G +D PA Sbjct: 284 PIVLRYYLAGPHYRSMIEYSEESLREAETGFARIEGFIERAVERCGPVDPAPEVPPAFAE 343 Query: 354 ALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFNASAHILGIEVCKEH-- 400 A+ +DL A+ +H R EST L A +LG++ E Sbjct: 344 AMDDDLGVPQALAVVHTAVRQGNSALGADDKESTAAR--LAEVRAMLGVLGLDPLDEQWA 401 Query: 401 --------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + ++++R K F++AD IR QL + G +ED Sbjct: 402 DGAGQGEELTGVVDALVRLVLEQRQAARARKDFATADAIRDQLGAAGLAVED 453 >gi|148983973|ref|ZP_01817292.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|148992298|ref|ZP_01822021.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|149010789|ref|ZP_01832160.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] gi|168482827|ref|ZP_02707779.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] gi|168488279|ref|ZP_02712478.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|168492751|ref|ZP_02716894.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|221231418|ref|YP_002510570.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] gi|225854126|ref|YP_002735638.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae JJA] gi|225856294|ref|YP_002737805.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae P1031] gi|147765270|gb|EDK72199.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] gi|147924120|gb|EDK75232.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|147928924|gb|EDK79936.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|172043769|gb|EDT51815.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] gi|183573040|gb|EDT93568.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|183576856|gb|EDT97384.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|220673878|emb|CAR68383.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] gi|225723999|gb|ACO19852.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae JJA] gi|225725363|gb|ACO21215.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae P1031] gi|301799643|emb|CBW32201.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae OXC141] gi|332074402|gb|EGI84878.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA17570] gi|332203756|gb|EGJ17823.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA47368] Length = 447 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 183/469 (39%), Positives = 254/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|89075764|ref|ZP_01162152.1| cysteinyl-tRNA synthetase [Photobacterium sp. SKA34] gi|89048496|gb|EAR54071.1| cysteinyl-tRNA synthetase [Photobacterium sp. SKA34] Length = 460 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 184/484 (38%), Positives = 265/484 (54%), Gaps = 53/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I P I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEAFTPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+ RNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFARNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALGMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A+N +++F+ S +YG S++ +D+ + G RV Sbjct: 114 ATQFIAEIIALCERLIERGFAYVASNGDVMFEVSKYEDYGRLSKQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 +R ++ HYR ++++ + L +A L + TS +D ++ + Sbjct: 286 PETVRYFLMSGHYRSQLNYSEENLKQARSALER---LYTSLRGLDTSIEAAGGEEFVARF 342 Query: 354 --ALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 A+ +D NT A + +ARE TK L A +LG+ Sbjct: 343 KEAMDDDFNTPEAYSVMFDMAREINRLKTDDVTKASALGSRMRELADVLGLLSQEPEAFL 402 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + ++ ++A IE L+Q+RL K +++AD R +L + G ILED G + T Sbjct: 403 QGGAGEDDNVAEIEALIQQRLDARAAKDWAAADEARDKLLAMGIILED------GAQGTT 456 Query: 457 WKQK 460 W++K Sbjct: 457 WRRK 460 >gi|304438773|ref|ZP_07398701.1| cysteine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372775|gb|EFM26353.1| cysteine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 461 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 181/485 (37%), Positives = 259/485 (53%), Gaps = 55/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R + EF + + MY CGPTVY+F H+GNARP+++FD L R + Y Sbjct: 1 MKLYNTLSRSLEEFVPVKEGQVNMYNCGPTVYNFIHVGNARPLVIFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDKII RA +EH + I+ + ++F KD L T P Sbjct: 59 DVNFVVNFTDIDDKIINRANEEHVDF------TEISERYIKEFKKDANGLHLYDYETINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT I +MI I+ + AY + ++ FD + +YG S++ IDE G R+ Sbjct: 113 RATEMIKEMIEFIKILESKDAAYVLDGDVYFDINKAKDYGKLSKKNIDELMAGARIGVAE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK+ EP WESPW GRPGWHIECS M+ LG DIH GG DL FP Sbjct: 173 GKRNPGDFVLWKKKKEGEPSWESPWSEGRPGWHIECSVMAKTILGDTIDIHSGGEDLQFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ + AN W+HNG +N++ KMSKS GNF TI E+ + + Sbjct: 233 HHENEIAQSETANG-KTFANYWLHNGMINVDNEKMSKSKGNFFTIREV-------SKEYD 284 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTS-------KGI 346 V+R +L HYR PI+F +++R+ A+ L K + + + K + Sbjct: 285 LEVLRYFLLTCHYRSPINFSHEVMDQCKASLERMYNAKEKLEKLIENANAGSLDEEVKEL 344 Query: 347 IDPAVL---SALYNDLNTVSAIQALHKLAR-ESTKNHD--------LLPIFNASAHILGI 394 +D V A+ +D+NT A+ A+ + + +TK D + N + +LGI Sbjct: 345 VDAEVKYFEDAMEDDINTADALTAIFNIVKIINTKVDDSSKETLEYVRDSLNKLSKVLGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 KE + +S E L ERL K K ++ +D +R +L + G ++D + Sbjct: 405 LERKE---EGLSPEEEALFYERLEARKNKDYAKSDELRDKLLAMGIEVKD------SREG 455 Query: 455 TRWKQ 459 T WK+ Sbjct: 456 TTWKR 460 >gi|109894929|sp|Q21YS0|SYC_RHOFD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 459 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 252/465 (54%), Gaps = 44/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R I + P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ G + Sbjct: 3 LRIYNTLSRAIEPLIPLQPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVS-GLR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII+RA + ++I +T + +D L PTH+PR Sbjct: 62 -VTYVRNVTDIDDKIIKRALEN------GESIRALTERMVDALHQDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +PQM+ LI + G AY+A N ++ + P YG S + +DE + G RV Sbjct: 115 ATEFVPQMLSLIGRLEQKGLAYQAVNGDVNYAVRKFPGYGKLSGKSLDELRAGERVAVAD 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + P EP W+S +G+GRPGWHIECSAM LG+ DIHGGG DL Sbjct: 175 GKDDPLDFVLWKTAKPNEPLDAKWDSVYGQGRPGWHIECSAMCGQMLGETVDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A+IW+HNGF+ + KMSKS GNF TI ++L Sbjct: 235 QFPHHENEIAQSEGATG-KPLASIWMHNGFVTRDNEKMSKSLGNFFTIRDILA------- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A R ++ HYR ++ + L +A L + T+ ++ P L Sbjct: 287 RYDAETTRFFIIRAHYRSALNHSDAHLDDARNSLKR---LYTALDLVAPEPLLEIDWRQP 343 Query: 353 ------SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI-----EVCKE 399 +A+ D T A+ + +LA E K D L + A LG+ +V + Sbjct: 344 FAARFKAAMDEDFGTPEAVAVMFELATEVNKTRDPKLAGLLKALGACLGLLQGDPKVFLQ 403 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +I L+ +R K F+ AD IR+ L ++G +L+D Sbjct: 404 AGATLDAASIAALIAQRTAAKAAKNFAEADRIRQDLLARGIVLKD 448 >gi|295101451|emb|CBK98996.1| cysteinyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6] Length = 465 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 185/473 (39%), Positives = 267/473 (56%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF P R+YVCGPTVY++ HIGNARP+IVFD L R L Y G K Sbjct: 1 MQIFNTLTRQKEEFVPQVPGEYRIYVCGPTVYNYIHIGNARPLIVFDTLRRYLEYR-GNK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDK+I++ ++E S+ + + +++KD L C PT QPR Sbjct: 60 -VIYVSNITDIDDKLIKKGQEEGTSM------KEVAQRFEAEYLKDAAGLNCKKPTVQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----V 179 AT HI Q++ +++++I GHAY A N ++ F S P YG S K+D+ + G R Sbjct: 113 ATEHIQQILDIVKDLIESGHAYVAKNGDVYFRVKSDPEYGKLSHLKLDDLESGNRELRSQ 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++PADF +WK + P EP WESP+G GRPGWHIECSAMS +LGK D+H GG D Sbjct: 173 MEDDLKEDPADFAVWKAAKPGEPAWESPYGMGRPGWHIECSAMSRTHLGKTIDLHCGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS CA+ E A W+HNGF+N++ +KMSKS NF T+ ++ + Sbjct: 233 LIFPHHENEIAQSECANGCE-FARYWMHNGFINVDNQKMSKSLHNFFTVRDVANLYGY-- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP- 349 IR ML YR P+++TV + + L + + + T+ G + Sbjct: 290 -----EPIRYFMLTAGYRMPLNYTVDLIESCKNSLERLYTCRENLDFALSKTAFGTDETL 344 Query: 350 ---------AVLSALYNDLNTVSAIQALHKLARE-------STK--NHDLLPIFNASAHI 391 +A+ +DLNT A+ A+ L ++ S+K F+ + Sbjct: 345 KEKAEEAKKKFCTAMDDDLNTPDALAAVFDLVKDINTLSAASSKAALEAGAAAFDEITGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ + + +LV++R K K +++AD IR QL G+ ++D Sbjct: 405 LGLMYNRK--KDEVPAEVTELVEKRAAAKKAKDWAAADAIRAQLTGMGWAVKD 455 >gi|218709995|ref|YP_002417616.1| cysteinyl-tRNA synthetase [Vibrio splendidus LGP32] gi|254781698|sp|B7VGZ1|SYC_VIBSL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218323014|emb|CAV19191.1| Cysteinyl-tRNA synthetase [Vibrio splendidus LGP32] Length = 461 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 181/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LNFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIIELVEKLIQRGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDIDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHGTQ-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-DPA--------VLSA 354 A +R ++ HYR ++++ L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDVTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE-------VCKE 399 + +D NT A L ++ARE K L + A I+GI + + Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESIEKASALGALMRELADIIGILHQDPEAFLQGD 405 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +A IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEGLIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|257888689|ref|ZP_05668342.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,141,733] gi|257824743|gb|EEV51675.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,141,733] Length = 470 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 267/493 (54%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANELGITAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQNVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 V+R M T YR PI ++ + EA L K+ Q + S+ + D A Sbjct: 290 ----PQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 + + +D N + I +++LA+ ++ + +L +F+ Sbjct: 346 DKITLLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQAEVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|323350502|ref|ZP_08086164.1| cysteine--tRNA ligase [Streptococcus sanguinis VMC66] gi|322123184|gb|EFX94869.1| cysteine--tRNA ligase [Streptococcus sanguinis VMC66] Length = 447 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 177/468 (37%), Positives = 251/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVTALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + +N W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFSNYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D A L A + Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKEAFAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQEARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|84391753|ref|ZP_00991655.1| cysteinyl-tRNA synthetase [Vibrio splendidus 12B01] gi|84376466|gb|EAP93345.1| cysteinyl-tRNA synthetase [Vibrio splendidus 12B01] Length = 461 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LNFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +++ L++ +I G AY A+N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIVELVEKLIERGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHGTQ-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-DPA--------VLSA 354 A +R ++ HYR ++++ L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDVTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIE-------VCKE 399 + +D NT A L ++ARE K L + A I+GI + + Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESVEKASALGALMRELADIIGILHQDPEAFLQGD 405 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +A IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEALIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|227552721|ref|ZP_03982770.1| cysteine--tRNA ligase [Enterococcus faecium TX1330] gi|257897353|ref|ZP_05677006.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com12] gi|227178121|gb|EEI59093.1| cysteine--tRNA ligase [Enterococcus faecium TX1330] gi|257833918|gb|EEV60339.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com12] Length = 470 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 267/493 (54%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANELGIAAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQNVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 V+R M T YR PI ++ + EA L K+ Q + S+ + D A Sbjct: 290 ----PQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 + + +D N + I +++LA+ ++ + +L +F+ Sbjct: 346 DKITLLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQAEVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|312898320|ref|ZP_07757710.1| cysteinyl-tRNA synthetase [Megasphaera micronuciformis F0359] gi|310620239|gb|EFQ03809.1| cysteinyl-tRNA synthetase [Megasphaera micronuciformis F0359] Length = 482 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 174/505 (34%), Positives = 262/505 (51%), Gaps = 69/505 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++ +YNTL RK F+ + P ++MYVCG T Y+ +H+GNARP + +DV+ R L++ Sbjct: 1 MMRELTVYNTLSRKKEAFKPVTPGQVKMYVCGITPYNHSHMGNARPFVTWDVIKRYLKHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VT+++N TD+DDKII A E S I ++ + + +L Sbjct: 61 --GYAVTHIQNFTDVDDKIINAANGEEVSW------DTIANRYIASYFEVMDKLHIQRAD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PR + H+ +I +I +I +GHAYE + ++ + S +YG S R +D+ G R+ Sbjct: 113 KYPRVSEHMDDIIAMISKLIENGHAYELDGDVYYRVQSFEHYGELSHRSLDDMMAGARIE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG+ FD HGGG DL Sbjct: 173 VDDRKENPMDFALWKAAKPSEPSWDSPWGKGRPGWHIECSAMSLKYLGEPFDFHGGGSDL 232 Query: 241 IFPHHENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 IFPHHENEIAQ +CC N W+HNGF+ ++ KMSKS NF + ++LE Sbjct: 233 IFPHHENEIAQTEACC--NHGPMVNYWVHNGFITIDSEKMSKSLNNFFLVKDVLE----- 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------W--PQTSTSKGII 347 + +R ++ HYR P+DF+ +RLTE L + W Q S K + Sbjct: 286 --HYSPDALRYFLISNHYRSPLDFSDERLTEMTRSLERLGTAIDNTLWLLEQPSGGKSEL 343 Query: 348 DPAVL-----------SALYNDLNTVSAIQALHKLAR----------------ESTKNHD 380 A+L +A+ +D NT A A+ +LA+ +S + Sbjct: 344 SAALLADAQRTMEDFETAMCDDFNTALASAAMFELAKKVNIYTSEVSTNGVPADSAVLSE 403 Query: 381 LLPIFNASAHILGI------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + IF ILG+ + +K+ + ++ +++ R K+++ AD IR + Sbjct: 404 VKRIFKTMTDILGVLEDRWNGTAGKADDKDYAALMDVILELRQECRAQKQYALADAIRDK 463 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L G +ED + RWK+ Sbjct: 464 LSDLGITIED------SPQGARWKK 482 >gi|194396665|ref|YP_002037254.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae G54] gi|194356332|gb|ACF54780.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae G54] Length = 447 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 183/469 (39%), Positives = 253/469 (53%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIERGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|328675472|gb|AEB28147.1| Cysteinyl-tRNA synthetase [Francisella cf. novicida 3523] Length = 459 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 180/463 (38%), Positives = 251/463 (54%), Gaps = 41/463 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +P+AT Sbjct: 61 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+MI +I+ +I G+AY+ AN ++ + S +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMIAMIETLIEKGYAYQGANGDVFYRVSKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPIDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPA------VLSA 354 V+R + T YR I+++ + L A+ + K T + D A + A Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVEKLFNTLRDIEPVEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEVC--KEHLNKN 404 + ND NT A+ L LA+E K + +LGI +E+ + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 405 ISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 S+ IE+L+ ER K K + AD IR QL+ +G ILED Sbjct: 407 DSVDVGEIERLIVERTQAKKDKNYLRADEIRNQLQEQGIILED 449 >gi|255527266|ref|ZP_05394147.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|296187245|ref|ZP_06855641.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|255509051|gb|EET85410.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|296048116|gb|EFG87554.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] Length = 465 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 255/472 (54%), Gaps = 49/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ RK EF + ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVFNTIARKKEEFIPLSEKEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA+++ N + + K +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRAKED------NITVKELGDKFIEEYYKDADSLNIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +++ ++ +I G+AYE + ++ F T +YG S + +++ + G R+ Sbjct: 113 ATEYINEIVDFVKELIDRGYAYEVDGDVYFHTKKFKDYGKLSGQNLEDLQAGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W+SPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAVWKSQKPGEPAWKSPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLAFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE+AQS R KT A W+H+ F+N+ KMSKS NF T E+LE + Sbjct: 233 HENEVAQSEA--RTGKTFAKYWMHSAFVNVNNEKMSKSLNNFFTAREILE-------KYD 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAV-- 351 + VIRL ML HYR I+F+++ L + + + + + + ++D V Sbjct: 284 SDVIRLFMLSGHYRTQINFSMESLESMKAAMDRLYNSISNLESLLEETKQEELMDQEVEY 343 Query: 352 -----------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI------ 394 + + +D NT A+ + L R+ N + H L + Sbjct: 344 IKILDGYKEKYIEKMDDDFNTADAVSVIFDLIRDINTNVKIDSSKKLIKHCLNLIKELGK 403 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ N+ IE L++ER K K ++ +D IR L+ +G +LED Sbjct: 404 PLGILQKSKKGNLEEKIEALIEERQQARKDKNWALSDKIRDDLKEQGILLED 455 >gi|312873891|ref|ZP_07733929.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|311090567|gb|EFQ48973.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] Length = 470 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 262/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L+ KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELSLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|118442910|ref|YP_877177.1| cysteinyl-tRNA synthetase [Clostridium novyi NT] gi|187629804|sp|A0PXS5|SYC_CLONN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118133366|gb|ABK60410.1| cysteinyl-tRNA synthetase [Clostridium novyi NT] Length = 466 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 176/480 (36%), Positives = 251/480 (52%), Gaps = 65/480 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y G K Sbjct: 1 MKLFNTMTRQKEEFKPIKDGEVSMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E N + + + ++ KD L T PR Sbjct: 60 -VNFIQNFTDIDDKMIKKANEE------NITVKELGDRFIHEYYKDADGLNIKRATANPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ ++I ++++I G+AYE N ++ F T YG S + +D+ + G R+ Sbjct: 113 ATEYMDEIIQFVKDLIDKGYAYEVNGDVYFSTKQFKEYGKLSGQNLDDLQAGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W PWG+GRPGWHIECS M+ LG DIH GG DL+FPH Sbjct: 173 KKDPMDFAIWKSEKPGEPSWNCPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS R KT AN W+H+ +LN+ +KMSKS NF T E+LE + Sbjct: 233 HENEIAQSEA--RNGKTFANYWMHSAYLNINNKKMSKSLNNFFTTREILE-------KYD 283 Query: 304 APVIRLAMLMTHYREPIDFT-----------------------------VQRLTEAEILL 334 A VIRL ML HYR P++F+ V ++TE E Sbjct: 284 AEVIRLFMLSAHYRTPLNFSDDLLQSAKASNERLYNAIGNLERLLDEVKVDKVTENEKEY 343 Query: 335 SKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPI 384 K ++ K I + +D NT AI + L ++ N + L + Sbjct: 344 VKNLESYKEKYI------EKMDDDFNTADAISVIFDLVKDINTNINTESSKELVEYSLEL 397 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LGI L+ N IEKL+++R K K ++ AD IR L+++G +LED Sbjct: 398 IRELGKPLGILQKSTMLDLNAE--IEKLIEQRQQARKDKDWALADKIRDDLKARGIVLED 455 >gi|257899915|ref|ZP_05679568.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com15] gi|257837827|gb|EEV62901.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com15] Length = 470 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 264/493 (53%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANELGITAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQNVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 V+R M T YR PI ++ + EA L K+ Q + S+ + D A Sbjct: 290 ----PQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFNA 387 + + +D N + I +++LA+ +T +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPEVSATVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|328884016|emb|CCA57255.1| Cysteinyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712] Length = 466 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 176/485 (36%), Positives = 265/485 (54%), Gaps = 59/485 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P ++ +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFTPLTPGHVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFDYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL P+++P Sbjct: 62 -VTFIRNVTDIDDKIIAKGADQGRPWWSIG-------YENERAFNSGYDALGCLPPSYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK- 182 RAT H+P+MI +++ +I GHAYEA+ + FD S P Y S + ID+ R P + Sbjct: 114 RATGHVPEMIEMMRGLIERGHAYEADGSVYFDVRSFPGYLELSNQDIDD----LRQPAED 169 Query: 183 --YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDL Sbjct: 170 GITGKRDPRDFAMWKATKPGEPDWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGLDL 229 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ+ + A+ W+HN ++ + G KMSKS GN + ++E++ + Sbjct: 230 IFPHHENEIAQAKAFG--DDFASYWVHNAWVTMAGEKMSKSLGNSVLVSEMV-------K 280 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGIID--------P 349 +W V+R + HYR I+++ + L EAE ++ + Q +T K D P Sbjct: 281 AWRPIVLRYYLGTPHYRSMIEYSEESLREAESAFARIEGFVQRATEKAGKDVAPAAEVPP 340 Query: 350 AVLSALYNDLNTVSAIQALHKLARE-----STKNHD----LLPIFNASAHILGIEVCKEH 400 A A+ +DL A+ +H R+ + + D L A +LG++ H Sbjct: 341 AFAEAMDDDLGVPHALAIIHTTVRQGNSALAADDKDEAIARLAEVRAMLGVLGLDPLDPH 400 Query: 401 ----------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 L+ + + ++++R + K +++AD IR QL G +ED +PD Sbjct: 401 WAEETGGGEELHGAVDTLVRLVLEQRESARERKDWATADAIRDQLNQSGLAIED--SPD- 457 Query: 451 GQRMT 455 G R T Sbjct: 458 GPRWT 462 >gi|163785456|ref|ZP_02180059.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159879275|gb|EDP73176.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 436 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 156/390 (40%), Positives = 221/390 (56%), Gaps = 36/390 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF I+P +++Y CG TVYD H+G+ R +IVFD++ R LRY Sbjct: 3 LKVYNTLSGQKEEFVPINPGEVKIYTCGVTVYDVNHVGHGRSLIVFDMIRRYLRYL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA+ E +P ++I + +++ +D +PR Sbjct: 61 NVKFVRNFTDVDDKIINRAKNE--CLPF----TVIADRYIKEYFQDAENFRIEPADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP +I IQ +I G+AYE ++ F +YG S+R +DE G RV Sbjct: 115 VTTHIPDIIDFIQKLIDKGYAYEVEGDVYFSVRKFKDYGKLSKRSVDELIAGARVEPGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK S EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL FPH Sbjct: 175 KKDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQ+ + A WIHNG + + G+KMSKS GN+IT+ E+ + Sbjct: 235 HENELAQAEALSE-KPFARYWIHNGLVTVNGQKMSKSLGNYITLKEIY-------SKYEP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI-------------LLSKWPQTSTSKGIIDPAV 351 ++RL +L HYR P+DF+ +++ E + +L K P+ +G + A+ Sbjct: 287 DILRLLVLSVHYRSPLDFSWEKMEETKKAYERLKNAMDEYEILEKLPENPDFEGHLYDAI 346 Query: 352 -------LSALYNDLNTVSAIQALHKLARE 374 +A+ +D NT A+ AL L RE Sbjct: 347 AKAEQGFYAAMSDDFNTPEALAALFSLVRE 376 >gi|325695526|gb|EGD37426.1| cysteine--tRNA ligase [Streptococcus sanguinis SK150] Length = 447 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 175/468 (37%), Positives = 249/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PKE-----VADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D A L A + Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IECLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|67922209|ref|ZP_00515723.1| Cysteinyl-tRNA synthetase, class Ia [Crocosphaera watsonii WH 8501] gi|67855912|gb|EAM51157.1| Cysteinyl-tRNA synthetase, class Ia [Crocosphaera watsonii WH 8501] Length = 482 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 257/488 (52%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ F + P + MY CG TVYD+ H+G+AR I++D++ R L++ E Sbjct: 3 LKIYNTQTRRLEPFVTLLPGRVTMYCCGVTVYDYCHLGHARSYIIWDMVRRYLKWRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDIDDKI+ RA+++ S+ + I+ + + + +D L + PR Sbjct: 62 -VTYVQNFTDIDDKILRRAQEQGVSM------ADISERFIEAYFEDIRPLNVMDADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 T++I + LI+ ++ +AY A+ ++ F + YG S R + G RV Sbjct: 115 VTDNISGIQQLIEVLLEKNYAYAADGDVYFHVEAFEQYGKLSGRSQSMMQAGASGRVAVS 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P HKK+P+DF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPTNSHKKHPSDFALWKSAKPEEPAWDSPWGEGRPGWHIECSAMVRGLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A+ + A W+HNG + + G KMSKS GNF TI ELL Sbjct: 235 DLVFPHHENEIAQSEAANG-KPLAKYWVHNGMVTVNGEKMSKSLGNFTTIRELLN----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSK-------WPQTST 342 R VIRL +L HYR+P+DFT + ++ A +L + W + Sbjct: 289 -RPLEPMVIRLFVLQAHYRKPLDFTEEAISSATNGWQTLQQGLLFGEKYGNRLGWEKNQE 347 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARE--------------STKNHDLLPIFNAS 388 + + + +D N+ + L +LA+ +T DL + Sbjct: 348 LDSAVIEQFKATVDDDFNSPGGLAVLFELAKNLRREGNLLTHEGKITTDGEDLQRQWQTL 407 Query: 389 AHILGI-------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 H+ GI EV E N I KL+Q+R K+K ++ +D IR+QL+ G Sbjct: 408 VHLAGILGLEAKSEVGSEDTNNFDQAEITKLIQQRNAARKVKDYAESDRIREQLQEMGIT 467 Query: 442 LEDYKNPD 449 L D N + Sbjct: 468 LIDQPNGE 475 >gi|254373761|ref|ZP_04989244.1| cysteinyl-tRNA synthetase [Francisella novicida GA99-3548] gi|290954116|ref|ZP_06558737.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] gi|151571482|gb|EDN37136.1| cysteinyl-tRNA synthetase [Francisella novicida GA99-3548] Length = 459 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 344 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 404 KQGDGADAS-EIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 449 >gi|257455309|ref|ZP_05620544.1| cysteinyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] gi|257447271|gb|EEV22279.1| cysteinyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] Length = 482 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 185/489 (37%), Positives = 268/489 (54%), Gaps = 55/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IY+++ + F ++ + MYVCG TVYD+ HIG+AR M+ FDV+ R LR+ + Sbjct: 10 ITIYDSMSGQKRPFTPLEAGKVGMYVCGMTVYDYCHIGHARVMVGFDVVVRWLRHIGYD- 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA+ ++I +T + + +D L C P +P+ Sbjct: 69 -VNYVRNITDIDDKIINRAKDN------GESIYELTDRFIKAMHEDADNLGCERPNSEPK 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPE 181 AT+ IPQM +LIQ + AY+ A ++ + + YG S+R++ + + G RV Sbjct: 122 ATDFIPQMQHLIQTLESKNLAYQGATGDVYYAVENFAEYGKLSKRRLADMQAGASERVNV 181 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KKNP DF+LWK + EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG Sbjct: 182 ETDKKNPFDFVLWKSAKQTEPSETKWQSPWGVGRPGWHIECSAMSTCCLGDTFDIHGGGH 241 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI +++ Sbjct: 242 DLQFPHHENEIAQSEGATG-KTYANNWMHVGFINVDGEKMSKSLGNFFTIRDVM------ 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIIDPA------- 350 G+ P IR +L +HYR P++F+ L EA+ L++ Q S + + +PA Sbjct: 295 GQFHPE-TIRFFILSSHYRSPVNFSDSALKEAQTSLTRLYQALKSVESLTEPAGEIDETP 353 Query: 351 ----VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---------------HI 391 A+ +D N+ A+ L LARE K +L + + +I Sbjct: 354 FETPFNQAMCDDFNSAGAVSVLFSLAREINKAVNLETVEGNAQALALATLLKDLAQPLNI 413 Query: 392 LGI---EVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 L + + + + + ++ IE ++ R K F+ AD IR L+++G LED Sbjct: 414 LQLNPTDFLQAKVGETTGLSDSEIEAFIEARKQAKADKDFAKADQIRSDLKAQGIELEDG 473 Query: 446 KNPDNGQRM 454 KN +R+ Sbjct: 474 KNGTTWRRV 482 >gi|118496920|ref|YP_897970.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida U112] gi|187629823|sp|A0Q4Q1|SYC_FRATN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118422826|gb|ABK89216.1| cysteinyl-tRNA synthetase [Francisella novicida U112] Length = 459 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 176/466 (37%), Positives = 251/466 (53%), Gaps = 47/466 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEVC--KEHL 401 + A+ ND NT A+ L LA+E K + +LGI +E+ Sbjct: 344 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 403 Query: 402 NKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 404 KQGDGVDASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 449 >gi|90580099|ref|ZP_01235907.1| cysteinyl-tRNA synthetase [Vibrio angustum S14] gi|90438984|gb|EAS64167.1| cysteinyl-tRNA synthetase [Vibrio angustum S14] Length = 460 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 185/484 (38%), Positives = 265/484 (54%), Gaps = 53/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEAFTPIQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALGMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A+N +++F+ S +YG S++ +D+ + G RV Sbjct: 114 ATQFIAEIIALCERLIERGFAYVASNGDVMFEVSKYEDYGRLSKQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------NHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS---------- 353 +R ++ HYR ++++ L +A L + TS +D +V + Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARSALER---LYTSLRGLDTSVEAAGGEEFVTRF 342 Query: 354 --ALYNDLNTVSAIQALHKLARE--STKNHDLLPI------FNASAHILGI------EVC 397 A+ +D NT A L +ARE K D+ A +LG+ Sbjct: 343 KEAMDDDFNTPEAYSVLFDMAREINRLKTDDVATASALGARMRELADVLGLLSQEPEAFL 402 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + ++ ++A IE L+Q+RL K +++AD R +L + G ILED G + T Sbjct: 403 QGGAGEDDNVAEIEALIQQRLDARAAKDWAAADEARDKLLAMGIILED------GAQGTT 456 Query: 457 WKQK 460 W++K Sbjct: 457 WRRK 460 >gi|261820651|ref|YP_003258757.1| cysteinyl-tRNA synthetase [Pectobacterium wasabiae WPP163] gi|261604664|gb|ACX87150.1| cysteinyl-tRNA synthetase [Pectobacterium wasabiae WPP163] Length = 461 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 177/482 (36%), Positives = 255/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA I + +T++ + D L + P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNIVHPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A+N +++F + P YG+ SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGALSRQDLDQLQAGARVEITA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSRCA-HDGPYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAVLSA 354 +R ++ HYR ++++ L +A L + + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALERLYIALRGTDLSVAAHGGDEFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNI 405 + +D NT A L +ARE + + L + +LG +E E +N Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDVQAANQLASALRKLSGVLGLLEQDPEQFLQNG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVDNDEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|317051773|ref|YP_004112889.1| cysteinyl-tRNA synthetase [Desulfurispirillum indicum S5] gi|316946857|gb|ADU66333.1| cysteinyl-tRNA synthetase [Desulfurispirillum indicum S5] Length = 465 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 182/476 (38%), Positives = 253/476 (53%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT +F I+P R+YVCG T YD HIG+AR + FD + R L Y E Sbjct: 2 IRLYNTQSSSKEDFIPIEPGKARIYVCGVTTYDHCHIGHARSAVAFDSIRRYLSYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII RAR+ + + + + +D L L PT PR Sbjct: 61 -VTFVKNYTDIDDKIINRAREN------GEEWKALAERFISEHDRDMAALYVLPPTIAPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+MI LI+ ++ +G+AY+ ++I F YG S + +++ + G+RV Sbjct: 114 ATEHLPEMIALIEKLLDNGYAYKGGDDIFFRVHRFTEYGKLSHKALEDLQSGSRVEVNPL 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK EP WE+ +G GRPGWHIECSAM +LG+VFDIHGGG DLIFPH Sbjct: 174 KENPLDFVLWKGKKEGEPSWEASFGAGRPGWHIECSAMGHKHLGRVFDIHGGGKDLIFPH 233 Query: 245 HENEIAQS----CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 HENEIAQS CA A WIHNGF+N+ KMSKS GNF TI E+L+ Sbjct: 234 HENEIAQSQAGYGCA-----PARYWIHNGFVNINNEKMSKSLGNFFTIKEILQ------- 281 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGI---- 346 + V+RL + THYR PIDF + +T A L K T TS I Sbjct: 282 HYDPEVLRLFLAQTHYRSPIDFCEENMTMARQALEKLYRFLENFENHEDTRTSDSIAPVL 341 Query: 347 --IDPAVLSALYNDLNTVSAIQAL----HKLARESTKNHDLLPIFNAS---AHILGIE-- 395 I A+ +D N+ A+ +L H L + + + D I++ +LGI Sbjct: 342 SDITRKFEEAMDDDFNSALALASLFEGVHTLNKLNPSSADAKGIYDTYCRLGDVLGIFQS 401 Query: 396 -----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ ++ + I ++ R + K F++AD IR +L G ++D K Sbjct: 402 LPSQWFARQSTSQLSADEIAARIEARNAARRDKDFATADRIRDELLENGVEIKDSK 457 >gi|260887698|ref|ZP_05898961.1| cysteine--tRNA ligase [Selenomonas sputigena ATCC 35185] gi|330838629|ref|YP_004413209.1| cysteinyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] gi|260862578|gb|EEX77078.1| cysteine--tRNA ligase [Selenomonas sputigena ATCC 35185] gi|329746393|gb|AEB99749.1| cysteinyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] Length = 476 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 174/498 (34%), Positives = 256/498 (51%), Gaps = 67/498 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ EF+ ++P +Y CG T Y+ HIGNARP + +DV+ R L EK Sbjct: 2 LRVYNTLTREKEEFKPLEPGKASIYCCGVTPYNDPHIGNARPFVTWDVVRRYL-----EK 56 Query: 65 ---CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V YV+N TDIDDKII RA++ + + ++ K L Sbjct: 57 KGYAVHYVQNFTDIDDKIIRRAKE------AGETWKELADHYIAEYFKAIDALNVRRADA 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR + HI ++ +I+ +I G+AY + ++ + YG S R +D+ + G RV Sbjct: 111 YPRVSEHIADVLAVIEKLIEKGYAYALDGDVYYSVERFAGYGKLSGRSLDDMQAGARVGV 170 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K +P DF LWK + P EP W+SPWG+GRPGWHIECS MS YLG+ FD HGGG DLI Sbjct: 171 DERKHHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSTMSMKYLGETFDFHGGGSDLI 230 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQ+ C A W+HNGF+ + KMSKS NF T+ ++LE K+ G Sbjct: 231 FPHHENEIAQAQACTGDDHSFARYWLHNGFITIHDEKMSKSKNNFFTVKDILE--KYAGE 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDPAVLS--- 353 V+R ++ THYR P+DFT +RL EA+ L++ W + D + S Sbjct: 289 -----VVRFFIVQTHYRSPLDFTDERLVEAKTSLARLKNSWDNAAELSSRKDESSGSAKS 343 Query: 354 --------------ALYNDLNTVSAIQALHKLARE----------------STKNHDLLP 383 A+ +D NT AI L L++E + + Sbjct: 344 LLAAAMEAKAAFYEAMDDDFNTALAISHLFSLSKEINIYYNEVTTGAAAFDAANFAKVRA 403 Query: 384 IFNASAHILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 ++ A ++GI KE + + +E L+ R + K ++ AD++R +L+++G + Sbjct: 404 VYAEMAEVIGIFEAKEEKAADGLVDSLMELLLNLRQKAREEKNWALADHLRDELKARGVV 463 Query: 442 LEDYKNPDNGQRMTRWKQ 459 +ED P RWK+ Sbjct: 464 IED--TPQG----ARWKR 475 >gi|89900143|ref|YP_522614.1| cysteinyl-tRNA synthetase [Rhodoferax ferrireducens T118] gi|89344880|gb|ABD69083.1| cysteinyl-tRNA synthetase [Rhodoferax ferrireducens T118] Length = 470 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 252/465 (54%), Gaps = 44/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R I + P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ G + Sbjct: 14 LRIYNTLSRAIEPLIPLQPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVS-GLR 72 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII+RA + ++I +T + +D L PTH+PR Sbjct: 73 -VTYVRNVTDIDDKIIKRALEN------GESIRALTERMVDALHQDADALGIERPTHEPR 125 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +PQM+ LI + G AY+A N ++ + P YG S + +DE + G RV Sbjct: 126 ATEFVPQMLSLIGRLEQKGLAYQAVNGDVNYAVRKFPGYGKLSGKSLDELRAGERVAVAD 185 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + P EP W+S +G+GRPGWHIECSAM LG+ DIHGGG DL Sbjct: 186 GKDDPLDFVLWKTAKPNEPLDAKWDSVYGQGRPGWHIECSAMCGQMLGETVDIHGGGADL 245 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A+IW+HNGF+ + KMSKS GNF TI ++L Sbjct: 246 QFPHHENEIAQSEGATG-KPLASIWMHNGFVTRDNEKMSKSLGNFFTIRDILA------- 297 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A R ++ HYR ++ + L +A L + T+ ++ P L Sbjct: 298 RYDAETTRFFIIRAHYRSALNHSDAHLDDARNSLKR---LYTALDLVAPEPLLEIDWRQP 354 Query: 353 ------SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI-----EVCKE 399 +A+ D T A+ + +LA E K D L + A LG+ +V + Sbjct: 355 FAARFKAAMDEDFGTPEAVAVMFELATEVNKTRDPKLAGLLKALGACLGLLQGDPKVFLQ 414 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +I L+ +R K F+ AD IR+ L ++G +L+D Sbjct: 415 AGATLDAASIAALIAQRTAAKAAKNFAEADRIRQDLLARGIVLKD 459 >gi|15896425|ref|NP_349774.1| cysteinyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|21264018|sp|Q97ED6|SYC_CLOAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15026246|gb|AAK81114.1|AE007813_1 Cysteinyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|325510582|gb|ADZ22218.1| cysteinyl-tRNA synthetase [Clostridium acetobutylicum EA 2018] Length = 464 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 256/471 (54%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ RK EF + P+ ++MYVCGPTVY+F HIGNAR IVFD + + Y G K Sbjct: 1 MKIYNTMTRKKEEFVPVKPNEVQMYVCGPTVYNFFHIGNARTFIVFDTVRKYFEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I +A E S+ + + +++ +D L T PR Sbjct: 60 -VNFIQNFTDIDDKMIAKANNEGVSV------KELGDRYIKEYYEDADGLNLERATCNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I ++ + G+AYE + ++ F+T++ YG S + ++++ G + Sbjct: 113 ATEYIGKIIDFVKGLQDEGYAYEIDGDVYFNTNAFKEYGKLSGQNLEDRMAGATIAVDDR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+PADF LWK P EP WESPWG+GRPGWHIECS M+ LG DIH G +DLIFPH Sbjct: 173 KKSPADFALWKSEKPGEPSWESPWGKGRPGWHIECSCMARDLLGDTIDIHAGAIDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H +LN+ KMSKS NF+T ++L + + A Sbjct: 233 HENEIAQS-EARTGKPFSKYWMHAAYLNINNEKMSKSLNNFLTARDIL-------KEYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSAL 355 VIRL +L HYR P++FT + + A+ L + T +T++ D L AL Sbjct: 285 EVIRLFLLSAHYRTPLNFTEESIEAAKTSLERLYNTINNLGSLLNNTAESNDDSEYLKAL 344 Query: 356 -----------YNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHILGI 394 +D NT I + LA++ N + + LGI Sbjct: 345 DSYREKFIEKMDDDFNTADGISVIFDLAKDINININGKSSKAAVEKAISLMRELGKPLGI 404 Query: 395 -EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++H N+ I+ L+++R K K ++ AD IR L+ +G +LED Sbjct: 405 LQKVEKH---NLEDEIQNLIEQRQNARKNKDWALADKIRDDLKERGIVLED 452 >gi|9758060|dbj|BAB08639.1| cysteine-tRNA ligase [Arabidopsis thaliana] Length = 500 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 188/493 (38%), Positives = 261/493 (52%), Gaps = 66/493 (13%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K ++K+YNT+ ++ I P I +YVCG T YDF+HIG+AR + FDVLYR L++ Sbjct: 5 KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHL- 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + VT+VRN TD+DDKII+RA + P++ ++++ +++ D L CL PTH Sbjct: 64 -DYDVTFVRNFTDVDDKIIDRANKNGED-PLD-----LSNRFCDEYLVDMGALQCLPPTH 116 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPR + H+ +I +I+ II Y ++ F PNYG S + ++ + G RV Sbjct: 117 QPRVSEHMDNIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAV 176 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF LWK + P EP WESPWG GRPGWHIECSAMS HYL FDIHGGG DL Sbjct: 177 DSRKRNPADFALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPKFDIHGGGADLK 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+C A + N W+HNG + + KM+KS NF TI E+ S Sbjct: 237 FPHHENEIAQTCAACE-DSGVNYWLHNGHVTINNEKMAKSKHNFKTIREITA-------S 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRL---TEAEILLS-----------KWPQTSTSKGII 347 + +R ++ YR P+ FT +L +EA LS K QT+ K II Sbjct: 289 YHPLALRHFLMSAQYRSPLSFTASQLESSSEALYCLSPYQDALSEDGGKSEQTAEGKDII 348 Query: 348 ---DPAVLSALYNDLNTVSAI------------QALHKLARESTKNH-----DLLPIFNA 387 S + +DLNT + +L KL + K L+ I A Sbjct: 349 KKLKTEFESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQKKQRMSMLVSLVEIEKA 408 Query: 388 SAHILGI----------EVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYI 431 + +L + E+ KE K + A I +L++ER+ K K F+ +D I Sbjct: 409 AREVLDVLGLLTTLSYAEILKEMKLKTLIRAEIGEEGISQLIEERITARKNKDFAKSDEI 468 Query: 432 RKQLESKGFILED 444 R++L KG L D Sbjct: 469 REKLTRKGIALMD 481 >gi|168206821|ref|ZP_02632826.1| cysteinyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] gi|170661739|gb|EDT14422.1| cysteinyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] Length = 466 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 248/473 (52%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y G K Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEEGTTV------KKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFQGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILE-------RYDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDP-----------AVL 352 VIR ML HYR+ ++F+ L A+ + + + + +ID A L Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 353 SALY-----------NDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 +L +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ N++ IE L+ +R K + F+ AD IR +L+ +G ILED Sbjct: 406 LGM--FQKSTKGNLAEEIEALIAKRQQARKDRDFALADKIRDELKDRGIILED 456 >gi|309806486|ref|ZP_07700490.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|308167085|gb|EFO69260.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] Length = 470 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 261/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAEAVLKRYKNILRNIQERLSEKNDVSDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|309809236|ref|ZP_07703106.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|312871506|ref|ZP_07731599.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|312872554|ref|ZP_07732622.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|329920498|ref|ZP_08277230.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 1401G] gi|308170470|gb|EFO72493.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|311091916|gb|EFQ50292.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|311092901|gb|EFQ51252.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|328936174|gb|EGG32627.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 1401G] Length = 470 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 261/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|169344133|ref|ZP_02865116.1| cysteinyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] gi|169297744|gb|EDS79843.1| cysteinyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] Length = 466 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 248/473 (52%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y G K Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEEGTTV------KKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFQGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILE-------RYDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDP-----------AVL 352 VIR ML HYR+ ++F+ L A+ + + + + +ID A L Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 353 SALY-----------NDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 +L +D NT AI A+ L +++ N L + Sbjct: 346 ESLNQYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ N++ IE L+ +R K + F+ AD IR +L+ +G ILED Sbjct: 406 LGM--FQKSTKGNLAEEIEALIAKRQQARKDRDFALADKIRDELKDRGIILED 456 >gi|264677338|ref|YP_003277244.1| cysteinyl-tRNA synthetase [Comamonas testosteroni CNB-2] gi|262207850|gb|ACY31948.1| cysteinyl-tRNA synthetase [Comamonas testosteroni CNB-2] Length = 461 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 180/467 (38%), Positives = 257/467 (55%), Gaps = 48/467 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + F ++P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR G K Sbjct: 3 LRIYNTLSRALESFSPLEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRAS-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + +D L PT +PR Sbjct: 62 -VTYVRNITDIDDKIIKRA------VENGETIRSLTDRMIDALHQDADALGIERPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV Sbjct: 115 ATEYVPQMLGMIARLQDKGLAYQAGNGDVNYAVRKFPGYGKLSGKSLDELNAGERVAVAD 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + EP W+SP+G GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKHDPLDFVLWKSAKADEPADVRWQSPFGEGRPGWHIECSAMGCELLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPFARTWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A IR ++ +HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 EYDAETIRFFVVRSHYRSPLNYSNVHLDDARGALKR---LYTALDLVTPAEVQIDWSNPY 343 Query: 353 -----SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEHLNKNI 405 +A+ D T A+ L +LA E +K+ ++ + A LG+ + K + Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSPEVAGLLKALGACLGL--LQAEPQKFL 401 Query: 406 SIAIEKL--------VQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + + R K ++ AD IRK+L +G +L+D Sbjct: 402 QAGAEGVDAAAIEAQIAARAEAKAAKNWAEADRIRKELLDQGIVLKD 448 >gi|113477437|ref|YP_723498.1| cysteinyl-tRNA synthetase [Trichodesmium erythraeum IMS101] gi|123160290|sp|Q10XJ9|SYC_TRIEI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110168485|gb|ABG53025.1| cysteinyl-tRNA synthetase [Trichodesmium erythraeum IMS101] Length = 489 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 187/495 (37%), Positives = 268/495 (54%), Gaps = 74/495 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ F+ ++P+ I+MYVCG TVYD+ H+G+AR I +D + R L + G + Sbjct: 3 LKLYNSLTRQEETFEPLEPNIIKMYVCGVTVYDYCHLGHARSYIAWDTMRRYL-IWQGYQ 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RAR+ S+ + + T+ + +D RL L PR Sbjct: 62 -VRYVQNFTDIDDKILKRARETGSSM------DSVAKRFTEAYFEDMKRLNVLEADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-- 180 AT +I ++ LI ++ G AY + ++ + YG S R+++E + G RV Sbjct: 115 ATQNIDRIQNLIHDLEKKGFAYSSGGDVYYQVREFSQYGKLSGRRLEEMQAGASGRVDSE 174 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E KK+P DF LWK + EP W+SPWG+GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DLETAKKKDPFDFALWKAAKTGEPAWDSPWGKGRPGWHIECSAMVQDCLGETIDIHAGGA 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNGF+ + G KMSKS GNF TI +LL+ Sbjct: 235 DLIFPHHENEIAQS-EASTGKILARYWLHNGFVTINGEKMSKSLGNFTTIRDLLDQ---- 289 Query: 299 GRSWPAPV----IRLAMLMTHYREPIDFTVQRLTEAE---------ILL-----SKWPQT 340 PV +R+ +L YR+PIDFT + + A+ IL K Sbjct: 290 ------PVDPMALRMFVLTAQYRKPIDFTEEAIASAKNGWNTIKEGILFPYQYGPKLGWE 343 Query: 341 STSKGIIDPAVL---------SALYNDLNTVSAIQALHKLARESTKNHDLL--------- 382 +K + D +L A+ +D+NT +A+ L +LA++ + ++L Sbjct: 344 MPAKNLSDQTLLLTSYLEKFQKAMDDDINTPAALAILFELAKDLRREGNVLIHEGKTETS 403 Query: 383 --------PIFNASAHILGIEVCKEHLNKNIS-----IAIEKLVQERLILLKMKKFSSAD 429 + + +LG+EV E NIS I IE L+Q+RL K K +S AD Sbjct: 404 LEELKKQWVTLVSLSQVLGLEVKIEEQVSNISEGLSNIEIESLIQQRLEAKKAKNYSEAD 463 Query: 430 YIRKQLESKGFILED 444 IR +L+S+G L D Sbjct: 464 RIRNELQSQGIKLID 478 >gi|284919700|emb|CAX65477.1| hypothetical protein [Enterobacter hormaechei] Length = 480 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 181/465 (38%), Positives = 253/465 (54%), Gaps = 41/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + + S I MYVCG TVYD H+G+AR + FD++ R LR+ + Sbjct: 22 IKLTNTLGMQKELLVPVKESKIGMYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYD- 80 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RAR + +T + + D +L L P +PR Sbjct: 81 -VTFVRNITDIDDKIIQRARD------TGEDWRSLTERMVHEMHIDFAKLGILPPNIEPR 133 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIPQ+I +I+ ++ AY A N +++F T+S YG S + I + GTR+ Sbjct: 134 PTEHIPQIISMIERLLHRQFAYIAENGDVMFSTASAKGYGKLSGQDITMLRAGTRIEVNE 193 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWKR+ P EP W SPWG GRPGWHIECSAM+ HYLG FDIHGGG DLIFP Sbjct: 194 YKRDPLDFVLWKRAKPGEPVWPSPWGEGRPGWHIECSAMNCHYLGTHFDIHGGGSDLIFP 253 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H G + + KMSKS NF T+ ++L +F +S Sbjct: 254 HHENEIAQSTSAND-GPYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDIL--NRFDAQS-- 308 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVLSAL 355 +R +L HYR+P++++ + + A L++ S A+ Sbjct: 309 ---VRFFLLSAHYRKPLNYSEENIHLARASLTRLYTACQFADGSRSEQHDAWRARFCEAM 365 Query: 356 YNDLNTVSAIQALHKLARESTK----NHD----LLPIFNASAHILG-IEVCKEHLNKNIS 406 +D NT A+ L +L RE + N D L ++LG +E + KN S Sbjct: 366 DDDFNTPQALAILFELTREINRLCGTNDDEAAALATTLKDLGNVLGLLEQSADAFLKNRS 425 Query: 407 -------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IEKL+ +R +M K+ AD +R +L +G LED Sbjct: 426 DLHPAELQLIEKLIHQRSEARRMGKWDKADRLRNELAEQGIDLED 470 >gi|139438524|ref|ZP_01772040.1| Hypothetical protein COLAER_01033 [Collinsella aerofaciens ATCC 25986] gi|133776063|gb|EBA39883.1| Hypothetical protein COLAER_01033 [Collinsella aerofaciens ATCC 25986] Length = 488 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 156/333 (46%), Positives = 204/333 (61%), Gaps = 17/333 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+ K EFQ I+ +RMYVCGPTVYD HIGNAR I FDV+ R L E Sbjct: 1 MRIYNSATHKKEEFQPIESGKVRMYVCGPTVYDNIHIGNARTFISFDVIRRWLIASGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ +N+TD+DDKII+RA ++ + + + ++ + +F+ L P +PR Sbjct: 60 -VTFAQNLTDVDDKIIKRANEQGRTA------AEVATEFSDKFIGVMRAANVLDPDVRPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I+ +I GHAY A+N ++ F S PNYG S R ID+ +G R+ E Sbjct: 113 ATKEIGPMIAMIKTLIEQGHAYAADNGDVYFAVRSDPNYGQVSGRNIDDLMVGARIEENE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK + P EP W SPWG GRPGWH EC+AM YLG DIHGGG DL FP Sbjct: 173 DKNDPLDFALWKAAKPGEPSWPSPWGEGRPGWHTECAAMVHRYLGTPIDIHGGGSDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ CA + +N W+H G L ++G KMSKS GNF T+ E+LE Sbjct: 233 HHENECAQATCAWH-QGFSNTWMHTGMLLVDGEKMSKSLGNFFTLAEVLEQHS------- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 A +RL ML T YR P+DF+ +RL AE L++ Sbjct: 285 AAALRLLMLQTSYRSPLDFSWERLEGAENSLTR 317 >gi|311280587|ref|YP_003942818.1| cysteinyl-tRNA synthetase [Enterobacter cloacae SCF1] gi|308749782|gb|ADO49534.1| cysteinyl-tRNA synthetase [Enterobacter cloacae SCF1] Length = 461 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 267/482 (55%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + D + ++ + + KD L L P ++PR Sbjct: 61 -LKYVRNITDIDDKIIKRANENG-----EDFVGLV-DRMIIEMHKDFDALNILRPDNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I + + +I GHAY A+N +++F S P YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIEITERLIERGHAYVADNGDVMFSVPSDPTYGELSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPAWASPWGEGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNTWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDASAAAAGGEAFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILG-IEVCKEHLNKNI 405 + +D NT A L +ARE K D +AH +LG +E E + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDAQAASAMAAHLRKLSGVLGLLEQDPETFLQGG 405 Query: 406 SIA-------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIESLIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|194324147|ref|ZP_03057921.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] gi|194321594|gb|EDX19078.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] Length = 464 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 176/466 (37%), Positives = 251/466 (53%), Gaps = 47/466 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 348 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEVC--KEHL 401 + A+ ND NT A+ L LA+E K + +LGI +E+ Sbjct: 349 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 408 Query: 402 NKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 409 KQGDGVDASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 454 >gi|310779627|ref|YP_003967960.1| cysteinyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] gi|309748950|gb|ADO83612.1| cysteinyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] Length = 475 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 175/484 (36%), Positives = 261/484 (53%), Gaps = 57/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL+ K+ EF+ + + MYVCGPTVY++ HIGNARP I FD + R L Y Sbjct: 2 LRIFNTLKGKVEEFKPLKEGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH-QP 123 V YV+N TD+DDK+I+RA +E ++ + K + +DT ++ +P Sbjct: 60 NVKYVQNFTDVDDKMIKRANEEGITLKE------VADKYIAAYFEDTAKVNLKEDGMLRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI LI+ +I AYE ++ F + YG S++ ++ + G+RV Sbjct: 114 KATEHIGEMIKLIKTLIEKDFAYEVQGDVYFSVKNYNEKYGELSKQNTEDLQSGSRVDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + EP W SPWG+GRPGWHIECSAMS+ YLG FDIHGGG DLIF Sbjct: 174 DIKRSPLDFALWKAAKEGEPSWGSPWGKGRPGWHIECSAMSNKYLGPTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + A WIHNG++N++G KMSKS GNF + E+LE + Sbjct: 234 PHHENEIAQSKCATGGD-FARYWIHNGYINVKGEKMSKSLGNFFLLREVLE-------KY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 V+R +L +HYR+PIDF+ L +A+ + + + S Sbjct: 286 EGKVVRFFVLSSHYRKPIDFSEDELNQAKAAVERIENSLMRVLEKMDERDSIGDHLAVES 345 Query: 342 TSKGIIDPAV--LSALYNDLNTVSAIQALHKLARESTKNHDLLP---------------I 384 +K + + ++A+ D NT I ++ +L +E K D I Sbjct: 346 LAKALEESKTKFVAAMDEDFNTSQGIGSIFELIKEMNKFMDGTSLDAEGREVLTAASDFI 405 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILE 443 A +LG+++ E N++ + + E R + ++ +D IR +L G ++ Sbjct: 406 KEAIIEVLGVDIKVEKKVGNMTSELVDFILEIRQNARVERNWALSDKIRDRLGDMGVKIK 465 Query: 444 DYKN 447 D K+ Sbjct: 466 DGKD 469 >gi|125624812|ref|YP_001033295.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363] gi|187629844|sp|A2RMS1|SYC_LACLM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|124493620|emb|CAL98607.1| CysS protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071611|gb|ADJ61011.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000] Length = 448 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 257/462 (55%), Gaps = 40/462 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A E+ S ++ + F +DT L + P+ Sbjct: 60 -VEYISNFTDVDDKIIKAAASENISTKE------LSERYIAAFYEDTDLLNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I MI IQ ++ +AY + ++ F + +Y + + + + G R E+ Sbjct: 113 ATEFIEAMIDFIQELLDKDYAYISEGDVYFRVAKSKDYAKLANKNLADLLAGASGRTDEE 172 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++PADF LWK E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TNLKESPADFALWKSVKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A +K N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQS-EAKTGQKFVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVV------ 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGIIDPAVLSALYND 358 ++R + THYR P++FT LTEAE + K + + + L+ ND Sbjct: 286 -DPQILRFFLTTTHYRRPLNFTDDALTEAENNIKKIENAYRHLDDQAESNLSALTTFRND 344 Query: 359 LNTVSAIQALHKLARESTKNHDLL-------------PIFNASAHILGIEVCKEHLNKNI 405 V+A+ +A T +D + F+ ILGI K + +++ Sbjct: 345 F--VAAMDEDFNIANGMTVFYDFVSWVNKGNGGAEVKAFFDQVLEILGI---KFEIEQSL 399 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE +++ER + +++ F+ +D IR L+++G +LED K+ Sbjct: 400 DSEIEAMIEERQLAREVRDFAKSDEIRDALKAQGIVLEDTKD 441 >gi|293572688|ref|ZP_06683656.1| cysteinyl-tRNA synthetase [Enterococcus faecium E980] gi|291607274|gb|EFF36628.1| cysteinyl-tRNA synthetase [Enterococcus faecium E980] Length = 470 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 263/493 (53%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANELGITAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQNVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 V+R M T YR PI ++ + EA L K+ Q + S+ + D A Sbjct: 290 ----PQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPEVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|332202472|gb|EGJ16541.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA41317] Length = 447 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 182/469 (38%), Positives = 252/469 (53%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TVRKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++ + ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMTKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFETADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|293553639|ref|ZP_06674263.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1039] gi|291602214|gb|EFF32442.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1039] Length = 470 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 263/493 (53%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGRVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANELGITAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L K+ Q + S+ + D A Sbjct: 286 KNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPKVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|325913157|ref|ZP_08175527.1| cysteine--tRNA ligase [Lactobacillus iners UPII 60-B] gi|325477578|gb|EGC80720.1| cysteine--tRNA ligase [Lactobacillus iners UPII 60-B] Length = 470 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 179/477 (37%), Positives = 261/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTQYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + ++KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TVQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|168485706|ref|ZP_02710214.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] gi|183571202|gb|EDT91730.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] Length = 447 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 182/469 (38%), Positives = 255/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLRKFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASA---HILGIEVCKEHLNKNISI 407 +A+ D N + I + ++A+ ++ N+D + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEIFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|157145196|ref|YP_001452515.1| hypothetical protein CKO_00929 [Citrobacter koseri ATCC BAA-895] gi|157082401|gb|ABV12079.1| hypothetical protein CKO_00929 [Citrobacter koseri ATCC BAA-895] gi|204636645|gb|ACI01739.1| putative cysteinyl-tRNA synthetase class Ia [Escherichia coli] Length = 460 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 181/465 (38%), Positives = 253/465 (54%), Gaps = 41/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + + S I MYVCG TVYD H+G+AR + FD++ R LR+ + Sbjct: 2 IKLTNTLGMQKELLVPVKESKIGMYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RAR + +T + + D +L L P +PR Sbjct: 61 -VTFVRNITDIDDKIIQRARD------TGEDWRSLTERMVHEMHIDFAKLGILPPNIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIPQ+I +I+ ++ AY A N +++F T+S YG S + I + GTR+ Sbjct: 114 PTEHIPQIISMIERLLHRQFAYIAENGDVMFSTASAKGYGKLSGQDITMLRAGTRIEVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWKR+ P EP W SPWG GRPGWHIECSAM+ HYLG FDIHGGG DLIFP Sbjct: 174 YKRDPLDFVLWKRAKPGEPVWPSPWGEGRPGWHIECSAMNCHYLGTHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H G + + KMSKS NF T+ ++L +F +S Sbjct: 234 HHENEIAQSTSAND-GPYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDIL--NRFDAQS-- 288 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVLSAL 355 +R +L HYR+P++++ + + A L++ S A+ Sbjct: 289 ---VRFFLLSAHYRKPLNYSEENIHLARASLTRLYTACQFADGSRSEQHDAWRARFCEAM 345 Query: 356 YNDLNTVSAIQALHKLARESTK----NHD----LLPIFNASAHILG-IEVCKEHLNKNIS 406 +D NT A+ L +L RE + N D L ++LG +E + KN S Sbjct: 346 DDDFNTPQALAILFELTREINRLCGTNDDEAAALATTLKDLGNVLGLLEQSADAFLKNRS 405 Query: 407 -------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IEKL+ +R +M K+ AD +R +L +G LED Sbjct: 406 DLHPAELQLIEKLIHQRSEARRMGKWDKADRLRNELAEQGIDLED 450 >gi|89256953|ref|YP_514315.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115315315|ref|YP_764038.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica OSU18] gi|134301406|ref|YP_001121374.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|156503147|ref|YP_001429212.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010049|ref|ZP_02274980.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC200] gi|254368215|ref|ZP_04984235.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|254372282|ref|ZP_04987773.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida GA99-3549] gi|295312486|ref|ZP_06803255.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] gi|109894902|sp|Q2A1T7|SYC_FRATH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|122324692|sp|Q0BKI3|SYC_FRATO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629822|sp|A7NE53|SYC_FRATF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629824|sp|A4IWF2|SYC_FRATW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89144784|emb|CAJ80122.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115130214|gb|ABI83401.1| cysteine--tRNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|134049183|gb|ABO46254.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|134254025|gb|EBA53119.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|151570011|gb|EDN35665.1| cysteinyl-tRNA synthetase [Francisella novicida GA99-3549] gi|156253750|gb|ABU62256.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 464 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 348 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 349 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 408 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 409 KQGDGADAS-EIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 454 >gi|254369813|ref|ZP_04985823.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] gi|157122772|gb|EDO66901.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] Length = 464 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANENGEST------TELVERNIRAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDNASE---YEEKF 348 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 349 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 408 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 409 KQGDGADAS-EIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 454 >gi|108764055|ref|YP_630849.1| cysteinyl-tRNA synthetase [Myxococcus xanthus DK 1622] gi|108467935|gb|ABF93120.1| cysteinyl-tRNA synthetase [Myxococcus xanthus DK 1622] Length = 504 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 164/385 (42%), Positives = 221/385 (57%), Gaps = 34/385 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NT+ + Q P + +YVCGPTVY + HIGNAR FDV+ R LR+ G K Sbjct: 21 IRLFNTMTMQKELLQPAIPGEVGVYVCGPTVYSYIHIGNARTFTSFDVVVRYLRHR-GLK 79 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TD+DDKII +A E P+ + ++ + F +DT L L P PR Sbjct: 80 -VRYVRNFTDVDDKII-KAAAETGEAPVE-----LAARYVEIFREDTRALHLLEPDFSPR 132 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++H+P++I +IQ ++ GHAY + ++ F SS +Y S+R +DE +G RV Sbjct: 133 VSDHLPEIIAIIQKLVDKGHAYASQGDVYFSVSSDEDYAKLSKRNLDELCVGERVQPGEQ 192 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS+ YLG+ FDIHGG LDLIFPH Sbjct: 193 KREPLDFALWKAAKPGEPAWESPWGPGRPGWHIECSAMSAKYLGETFDIHGGALDLIFPH 252 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A W+H GFL+LEG KMSKS GN + + + L Sbjct: 253 HENEIAQSESANGV-TFARYWMHCGFLDLEGAKMSKSLGNVVRLRDALTKVD-------P 304 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGII--DPAV 351 +R L THYR P+ F+ + L +AE + + +T KG + DP Sbjct: 305 EALRFFFLATHYRHPLSFSDKALADAETRMEYFYETLRKVDERISGKDFGKGPLHGDPQR 364 Query: 352 L-----SALYNDLNTVSAIQALHKL 371 SA+ +D NT + +L L Sbjct: 365 FFTEFESAMDDDFNTAGGLGSLSGL 389 >gi|148988955|ref|ZP_01820355.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] gi|147925452|gb|EDK76529.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] Length = 447 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 249/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIENGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---HILGIEVCKEHLNKNISIA 408 +A+ D N + I + ++A+ + + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|309799903|ref|ZP_07694108.1| cysteinyl-tRNA synthetase [Streptococcus infantis SK1302] gi|308116493|gb|EFO53964.1| cysteinyl-tRNA synthetase [Streptococcus infantis SK1302] Length = 457 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 251/467 (53%), Gaps = 37/467 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 12 IKIYDTMSRDLREFVPITKGEVLMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 71 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRYPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 124 VVEFMDDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 184 TARKENPVDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 243 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ LET Sbjct: 244 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALETID---- 297 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +DP L Sbjct: 298 ---GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDPGELQAFKDK 354 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHILGIEVCKEHLNKNISIAI 409 +A+ D NT + I + ++A+ ++ N+D +A + + + + I Sbjct: 355 FVAAMDEDFNTANGITVIFEMAKWINSGNYDAAVKETLAAMLE--VFGVVFVEEVLDEEI 412 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 E L+Q+R K F++AD IR QL ++G L D K +G R TR Sbjct: 413 EALIQKRQEARANKDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 456 >gi|309804596|ref|ZP_07698661.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] gi|315653979|ref|ZP_07906895.1| cysteine--tRNA ligase [Lactobacillus iners ATCC 55195] gi|308165988|gb|EFO68206.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] gi|315488675|gb|EFU78321.1| cysteine--tRNA ligase [Lactobacillus iners ATCC 55195] Length = 470 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 179/477 (37%), Positives = 261/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + ++KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TVQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|307708306|ref|ZP_07644773.1| cysteinyl-tRNA synthetase [Streptococcus mitis NCTC 12261] gi|307615752|gb|EFN94958.1| cysteinyl-tRNA synthetase [Streptococcus mitis NCTC 12261] Length = 447 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 254/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSAKSGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L + Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDAL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKG----IIDPA 350 + V+R HYR+PI+FT + + +AE L + P T T Sbjct: 285 NLDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVNAQELQAFKDK 344 Query: 351 VLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + I + ++A+ ++ N+D + A + GI +E L+ Sbjct: 345 FVAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD+IR QL ++G L D K +G R TR Sbjct: 402 -IEDLIQKRQEARANRDFATADHIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|257886072|ref|ZP_05665725.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,501] gi|257821928|gb|EEV49058.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,501] Length = 470 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 263/493 (53%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTASELGITAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L K+ Q + S + D A Sbjct: 286 KNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASDNLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPKVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|46906472|ref|YP_012861.1| cysteinyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. F2365] gi|47094540|ref|ZP_00232204.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|47097639|ref|ZP_00235159.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|217965673|ref|YP_002351351.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|226222868|ref|YP_002756975.1| cysteinyl-tRNA synthetase [Listeria monocytogenes Clip81459] gi|254825717|ref|ZP_05230718.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|254853494|ref|ZP_05242842.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|254900580|ref|ZP_05260504.1| cysteinyl-tRNA synthetase [Listeria monocytogenes J0161] gi|254913469|ref|ZP_05263481.1| cysteinyl-tRNA synthetase [Listeria monocytogenes J2818] gi|254932458|ref|ZP_05265817.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HPB2262] gi|254937950|ref|ZP_05269647.1| cysteinyl-tRNA synthetase [Listeria monocytogenes F6900] gi|254991761|ref|ZP_05273951.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-064] gi|255520317|ref|ZP_05387554.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-175] gi|290892620|ref|ZP_06555613.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi|300764636|ref|ZP_07074628.1| hypothetical protein LMHG_11118 [Listeria monocytogenes FSL N1-017] gi|61216246|sp|Q724H3|SYC_LISMF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781684|sp|B8DF15|SYC_LISMH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|259511837|sp|C1KYH2|SYC_LISMC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|46879736|gb|AAT03038.1| cysteinyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. F2365] gi|47013983|gb|EAL04996.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|47017086|gb|EAL07955.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|217334943|gb|ACK40737.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|225875330|emb|CAS04027.1| cysteinyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606866|gb|EEW19474.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|258610559|gb|EEW23167.1| cysteinyl-tRNA synthetase [Listeria monocytogenes F6900] gi|290557929|gb|EFD91450.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi|293584014|gb|EFF96046.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HPB2262] gi|293591477|gb|EFF99811.1| cysteinyl-tRNA synthetase [Listeria monocytogenes J2818] gi|293594961|gb|EFG02722.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|300514743|gb|EFK41798.1| hypothetical protein LMHG_11118 [Listeria monocytogenes FSL N1-017] gi|307569778|emb|CAR82957.1| cysS [Listeria monocytogenes L99] gi|328467850|gb|EGF38890.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 1816] gi|332310650|gb|EGJ23745.1| Cysteinyl-tRNA synthetase [Listeria monocytogenes str. Scott A] Length = 471 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 174/476 (36%), Positives = 253/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L T PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKATVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|73748013|ref|YP_307252.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. CBDB1] gi|109894897|sp|Q3ZWG4|SYC_DEHSC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|73659729|emb|CAI82336.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. CBDB1] Length = 457 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 176/463 (38%), Positives = 245/463 (52%), Gaps = 40/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ +F ++ ++MYVCG T HIG+A I FDV+ R L Y G + Sbjct: 1 MKIYNTLSGKLEKFVPLENGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLTYK-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKII +A + PS + +N F+ L + Sbjct: 60 -VKYIQNFTDIDDKIIAKANAQGIEPST--------LAERNIGVFLDAMAALNITPADYY 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++I ++ +I G+AY + + YG S R +++ G RV Sbjct: 111 PRATQEVPKIIEMVSGLIEKGYAYAVGGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEID 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIF Sbjct: 171 EEKEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIF 230 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + Sbjct: 231 PHHENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALS-------RY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---IIDPAVLSALY--- 356 A +R+ +L + YR P+ ++ + L AE + QT+ K + AV + Y Sbjct: 284 SADALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARKDNPQFKETAVDTKAYRER 343 Query: 357 ------NDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIE--VCKEHL 401 ND NT +A+ + L+R E+ K+ D +F A ILG+ V + Sbjct: 344 FTQYMDNDFNTSAALATIFDLSRELNRIEGEAGKSTDGQKLFKELADILGLSLIVAESKT 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ IE L++ R L K++ AD IR L++ G +LED Sbjct: 404 GTDVAPFIELLIELRKDLRVAKQYQLADKIRTSLDTAGILLED 446 >gi|224457829|ref|ZP_03666302.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] Length = 459 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN+++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANSDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 344 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K + AD IR QL+ +G ILED Sbjct: 404 KQGDGADAS-EIEKLIAERTQAKKDKNYVRADEIRNQLQQQGIILED 449 >gi|148998267|ref|ZP_01825736.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] gi|147755910|gb|EDK62954.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] Length = 447 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 250/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + ++ + ++ N+D + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMTKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|332359942|gb|EGJ37756.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1056] Length = 450 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 177/472 (37%), Positives = 251/472 (53%), Gaps = 39/472 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFMPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + P + K F +D + L T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 PR + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 QHPRVIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEMSHNYAKLANKTLADLELGASGR 172 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSAL 355 V+R HYR+PI+FT + + +A L T G D A L A Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLKAF 344 Query: 356 YN--------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKN 404 + D N + I + +LA+ + + A A +L GI +E L + Sbjct: 345 LDKFTTAMDEDFNAANGITVVFELAKWINSGNYTAQVKEAFAKLLEVFGIVFVEEVLEAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L +G L D K +G R TR Sbjct: 405 ----IERLIEERQEARANRDFATADRIRDELADQGIKLLDTK---DGVRWTR 449 >gi|312796649|ref|YP_004029571.1| cysteinyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454] gi|312168424|emb|CBW75427.1| Cysteinyl-tRNA synthetase (EC 6.1.1.16) [Burkholderia rhizoxinica HKI 454] Length = 483 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 254/469 (54%), Gaps = 44/469 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F + +RMYVCG TVYD+ H+G+ R M+VFD++ R LR G Sbjct: 20 QLRLYNTLSRNKETFVPLHDGEVRMYVCGMTVYDYCHVGHGRLMVVFDMIQRWLRTL-GY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRNITDIDDKII RA + + I +T + +D L P H+P Sbjct: 79 R-VTYVRNITDIDDKIIRRA------VDNGEPIRALTERFIAAMHEDEAALNIQRPDHEP 131 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT I QM+ +I + +G+AY + ++ + YG S + +++ + G RV + Sbjct: 132 RATQFISQMLGMIDALERNGYAYSGRDGDVNYSVRKFAAYGQLSGKSLEDLRAGERVTQN 191 Query: 183 YHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWKRS EP GW+S WGRGRPGWHIECSAMS LG+ FDIHGGG D Sbjct: 192 DAKEDPLDFVLWKRSKDGEPPDTGWDSKWGRGRPGWHIECSAMSCALLGERFDIHGGGQD 251 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS + N W+HNGF+N++ KMSKS GNF T+ ++L+ Sbjct: 252 LQFPHHENEIAQSEGVTG-QPFVNYWLHNGFVNVDNEKMSKSLGNFFTLRDVLQ------ 304 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID------P 349 + VIR+ +L HYR P++++ L +A L++ + +D Sbjct: 305 -RYDGEVIRMLILRAHYRSPLNYSDSHLDDARAALTRLYTALKNVAPDDRALDWSERHAA 363 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--EVCKEHLNKNI 405 A +A+ +D NT A AL L + + D L A +LG+ +E+L Sbjct: 364 AFRAAMNDDFNTPVAFAALFDLVTDLNRTGDPALARQLKGLAGVLGMLGRDPREYLQARA 423 Query: 406 ----------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I++ ++ R + K ++ AD IR L G +LED Sbjct: 424 PATDELAPLDAAQIDEQIEARAQAKRAKNYAEADRIRAALLEAGVVLED 472 >gi|54308291|ref|YP_129311.1| cysteinyl-tRNA synthetase [Photobacterium profundum SS9] gi|61216519|sp|Q6LT67|SYC1_PHOPR RecName: Full=Cysteinyl-tRNA synthetase 1; AltName: Full=Cysteine--tRNA ligase 1; Short=CysRS 1 gi|46912719|emb|CAG19509.1| putative cysteinyl-tRNA synthetase [Photobacterium profundum SS9] Length = 464 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 187/485 (38%), Positives = 264/485 (54%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L ++ EF+ I P I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTKQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + KD L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGEMHKDFDALGMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A+N +++F+ S YG SR+ +D+ + G RV Sbjct: 114 ATEFIAEIIILCERLIERGFAYVASNGDVMFEVSKFEEYGRLSRQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCATG-SQYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ L +A L + + + A ++ Sbjct: 286 AESVRYFLMSGHYRSQLNYSEDNLKQARSALERLYTSLRGLDLTAQAEGGEEFVTRFTAS 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLP--IFNAS---------AHILGI------E 395 + +D NT A L +ARE K + + I AS A ILG+ Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKADETIANNIVQASALGARLRELADILGLLSQDPEA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++ IE LVQ+RL K +++AD R +L + ILED G + T Sbjct: 406 FLQGGAGQDDVAEIETLVQQRLDARAAKDWAAADAARDKLLAMKIILED------GPQGT 459 Query: 456 RWKQK 460 W++K Sbjct: 460 TWRRK 464 >gi|315612689|ref|ZP_07887601.1| cysteine--tRNA ligase [Streptococcus sanguinis ATCC 49296] gi|315315276|gb|EFU63316.1| cysteine--tRNA ligase [Streptococcus sanguinis ATCC 49296] Length = 447 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 180/470 (38%), Positives = 257/470 (54%), Gaps = 43/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVADLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPDEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 -LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDTQELQAFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHIL---GIEVCKEHLNKNIS 406 +A+ D N+ + I + ++A+ ++ N+D + A A +L GI +E L+ + Sbjct: 345 FVAAMDEDFNSANGITVVFEMAKWINSGNYD-ASVKQALADMLEVFGIVFVEEVLDAD-- 401 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 --IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|291459364|ref|ZP_06598754.1| cysteine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417963|gb|EFE91682.1| cysteine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 469 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 182/479 (37%), Positives = 252/479 (52%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ + EF+ I+ IRMYVCGPTVY+ HIGNARPMIVFD R + Y G + Sbjct: 1 MRIYNTMSGRKEEFKPIEEGKIRMYVCGPTVYNLIHIGNARPMIVFDTFRRYMEYR-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 YV N TD+DDKII++A +E S IT + + KD L + PR Sbjct: 60 -FNYVSNYTDVDDKIIQKANEEGTSC------QRITERYIGEVEKDMKALNIEPASAHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI LI ++ G+AY +++ + ++T + NYG S + IDE + G R V Sbjct: 113 ATEEISGMISLIAELVEKGYAYASDDGTVYYNTKAFRNYGELSHKNIDELQSGLRELKVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++PADF+LWK EP W SPW GRPGWH EC M+ Y G DIH GG DL Sbjct: 173 GEEKKRSPADFVLWKPKKEGEPYWNSPWSEGRPGWHTECCVMAPKYCGGRLDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ A E+ AN W+HN F+N++ +KMSKS GNF+T+ +++ + Sbjct: 233 IFPHHENEIAQYEAA-HGERFANYWMHNAFINIDHKKMSKSLGNFLTVRDVI-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTS 343 W V+R ML HYR P++F+ VQRL E LS Sbjct: 285 RWDPMVLRFYMLSAHYRNPLNFSAELMDSAKQSLERILTAVQRLRELSGRLSGEELLPGE 344 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 + + + A + +DLNT AI A+ +L R + + +L Sbjct: 345 EKVREAAEEQRRNFNERMDDDLNTADAITAVFELVRIANSSVSEQSSAAICRYMLDTIVT 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI E + + +E+L++ER + K F AD IR +L S G L+D + Sbjct: 405 LLSVLGIRT--ERKEEKLDREVEELIEERQKAREKKDFKRADEIRDRLLSMGISLKDTR 461 >gi|18311409|ref|NP_563343.1| cysteinyl-tRNA synthetase [Clostridium perfringens str. 13] gi|168214716|ref|ZP_02640341.1| cysteinyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] gi|168217920|ref|ZP_02643545.1| cysteinyl-tRNA synthetase [Clostridium perfringens NCTC 8239] gi|182626995|ref|ZP_02954725.1| cysteinyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|21264002|sp|Q8XHQ5|SYC_CLOPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|18146093|dbj|BAB82133.1| cysteine-tRNA ligase [Clostridium perfringens str. 13] gi|170713805|gb|EDT25987.1| cysteinyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] gi|177907665|gb|EDT70289.1| cysteinyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|182380037|gb|EDT77516.1| cysteinyl-tRNA synthetase [Clostridium perfringens NCTC 8239] Length = 466 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 174/473 (36%), Positives = 247/473 (52%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y G K Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEEGTTV------KKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFEGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILE-------RYDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDP-----------AVL 352 VIR ML HYR+ ++F+ L A+ + + + + +ID A L Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 353 SALY-----------NDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 +L +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ N+ IE L+ +R K + F+ AD IR +L+ +G +LED Sbjct: 406 LGM--FQKSTKGNLEEEIEALIAKRQQARKDRDFALADKIRDELKDRGIVLED 456 >gi|110799706|ref|YP_697116.1| cysteinyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|168211251|ref|ZP_02636876.1| cysteinyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] gi|122958668|sp|Q0TMM4|SYC_CLOP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110674353|gb|ABG83340.1| cysteinyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|170710753|gb|EDT22935.1| cysteinyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] Length = 466 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 174/473 (36%), Positives = 247/473 (52%), Gaps = 51/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y G K Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEEGTTV------KKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFEGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILE-------RYDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDP-----------AVL 352 VIR ML HYR+ ++F+ L A+ + + + + +ID A L Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 353 SALY-----------NDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 +L +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG+ ++ N+ IE L+ +R K + F+ AD IR +L+ +G +LED Sbjct: 406 LGM--FQKSTKGNLEEEIEALIAKRQQARKDRDFTLADKIRDELKDRGIVLED 456 >gi|309808476|ref|ZP_07702375.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 01V1-a] gi|308168304|gb|EFO70423.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 01V1-a] Length = 470 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 261/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEIENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|86147083|ref|ZP_01065400.1| cysteinyl-tRNA synthetase [Vibrio sp. MED222] gi|85835148|gb|EAQ53289.1| cysteinyl-tRNA synthetase [Vibrio sp. MED222] Length = 461 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LNFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+N +++F+ YG S++ +++ + G RV Sbjct: 114 ATEFITEIIELVEKLIQRGFAYVASNGDVMFEVKKFDEYGKLSKQDLEQLQAGARVDIDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHGTQ-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLQ-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-DPA--------VLSA 354 A +R ++ HYR ++++ L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDVTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE-------VCKE 399 + +D NT A L ++ARE K L + A I+GI + + Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESIEKASALGALMRELADIIGILHQDPEAFLQGD 405 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +A IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEGLIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|315274656|ref|ZP_07869496.1| cysteinyl-tRNA synthetase [Listeria marthii FSL S4-120] gi|313615713|gb|EFR89001.1| cysteinyl-tRNA synthetase [Listeria marthii FSL S4-120] Length = 471 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 254/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L T PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKATVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQMINTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG+ DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGETIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI------- 346 VIR ML HYR+PI L +A+ L + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|327472399|gb|EGF17830.1| cysteine--tRNA ligase [Streptococcus sanguinis SK408] Length = 447 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 173/468 (36%), Positives = 249/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKKEGIT-PKE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I +++++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VVEFMDDIIRFVEDLVDKGYAYESEGDVYFRVEKSRDYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + +N W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFSNYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D A L A + Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQTDSAQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|289432010|ref|YP_003461883.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. GT] gi|288945730|gb|ADC73427.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. GT] Length = 485 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 176/463 (38%), Positives = 245/463 (52%), Gaps = 40/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ +F ++ ++MYVCG T HIG+A I FDV+ R L Y G + Sbjct: 1 MKIYNTLSGKLEKFVPLENGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLTYK-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKII +A + PS + +N F+ L + Sbjct: 60 -VKYIQNFTDIDDKIIAKANAQGIEPST--------LAERNIGVFLDAMAALNITPADYY 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++I ++ +I G+AY + + YG S R +++ G RV Sbjct: 111 PRATQEVPKIIEMVSGLIEKGYAYAVGGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEID 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIF Sbjct: 171 EEKEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIF 230 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + Sbjct: 231 PHHENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALS-------RY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---IIDPAVLSALY--- 356 A +R+ +L + YR P+ ++ + L AE + QT+ K + AV + Y Sbjct: 284 SADALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARKDNPQFKETAVDTKAYRER 343 Query: 357 ------NDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIE--VCKEHL 401 ND NT +A+ + L+R E+ K+ D +F A ILG+ V + Sbjct: 344 FTQYMDNDFNTSAALATIFDLSRELNRIEGEAGKSTDGQKLFKELADILGLSLIVAESKT 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ IE L++ R L K++ AD IR L++ G +LED Sbjct: 404 GTDVAPFIELLIELRKDLRVAKQYQLADKIRTSLDTAGILLED 446 >gi|262276150|ref|ZP_06053959.1| cysteinyl-tRNA synthetase [Grimontia hollisae CIP 101886] gi|262219958|gb|EEY71274.1| cysteinyl-tRNA synthetase [Grimontia hollisae CIP 101886] Length = 461 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 159/383 (41%), Positives = 227/383 (59%), Gaps = 32/383 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L ++ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTKQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCEALTERLIGEMYADFDALNMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ + YG SR+ +++ + G RV + Sbjct: 114 ATQYIAEIIALVERLIDRGFAYVASNGDVLFEVAKFDEYGKLSRQDLEQLQAGARVDVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKKSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGNHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----------- 352 A +R ++ HYR ++++ + L +A + + TS +D +V Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASMER---LYTSLRGLDTSVAAEGGEAFVERF 342 Query: 353 -SALYNDLNTVSAIQALHKLARE 374 +A+ +D NT A L +ARE Sbjct: 343 KAAMDDDFNTPEAYSVLFDMARE 365 >gi|302535869|ref|ZP_07288211.1| cysteinyl-tRNA synthetase [Streptomyces sp. C] gi|302444764|gb|EFL16580.1| cysteinyl-tRNA synthetase [Streptomyces sp. C] Length = 466 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 174/476 (36%), Positives = 260/476 (54%), Gaps = 60/476 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F ++ + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFVPLEQGCVSIYLCGATVQAAPHIGHIRSGLNFDMMRRWFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKII + A Q P I +N + F T L CL PT++P Sbjct: 62 -VTFVRNVTDIDDKIIAKSAEQRRPWWSIG-------YENERAFNDGYTALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-- 181 RAT H+ +M+ +++ +I GHAYE+ + FD S P Y S SR+++D R PE Sbjct: 114 RATGHVTEMVEMMRGLIERGHAYESEGNVYFDVKSFPGYLSLSRQELDN----IRQPEST 169 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF +WK P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGGLDL Sbjct: 170 GETGKRDPRDFAMWKSVKPGEPSWETPWGRGRPGWHLECSAMAHKYLGEAFDIHGGGLDL 229 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ+ + AN W+HN ++ + G KMSKS GN + ++E++ + Sbjct: 230 IFPHHENEIAQAKAFG--DAFANYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------K 280 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI-----------LLSKWPQTSTSKGIIDP 349 W V+R + HYR I+++ + L EAE ++ K + + P Sbjct: 281 QWRPIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFYQRVIEKAGGPVEAAAEVPP 340 Query: 350 AVLSALYNDLNTVSAIQALHKLAREST-------KNHDL--LPIFNASAHILGIEVCKEH 400 A A+ +DL A+ +H R+ K+ + L A +LG++ H Sbjct: 341 AFAEAMDDDLGVPQALAIVHTTVRQGNSALAADDKDEAIARLAEVRAMLGVLGLDPLDPH 400 Query: 401 L------NKNISIAIEKLVQERLILLK------MKKFSSADYIRKQLESKGFILED 444 +++ A++ LV RL+L + K +++AD IR QL G ++ED Sbjct: 401 WAGEADRGEDLHGAVDTLV--RLVLEQRESARARKDWATADAIRDQLNQSGLVIED 454 >gi|149183935|ref|ZP_01862320.1| cysteinyl-tRNA synthetase [Bacillus sp. SG-1] gi|148848358|gb|EDL62623.1| cysteinyl-tRNA synthetase [Bacillus sp. SG-1] Length = 465 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 172/484 (35%), Positives = 261/484 (53%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKI+NTL RK EF+ ++ ++MYVCGPTVY++ HIGNARP IVFD ++R Y + Sbjct: 3 IKIFNTLTRKKEEFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVHRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + +P I + + + +DT L C PR Sbjct: 62 -VNFVSNFTDVDDKLIKAANELGEDVPA------IAERFIEAYHEDTEALGCQRADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ +I G+AYE+ ++ + T YG S + ID+ K+G R+ Sbjct: 115 VTESMDIIIDFIEALIDKGYAYESQGDVYYRTRKFEGYGKLSHQSIDDLKVGARIEAGDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E WESPWG+GRPGWHIECSAM+ YLG+ DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKAAKEGEIFWESPWGQGRPGWHIECSAMAKKYLGETIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + A W+HNG++N++ KMSKS GNF+ ++++++ + Sbjct: 235 HENEIAQSEALNE-KPFARYWMHNGYINIDNEKMSKSLGNFVLVHDIIKEQ-------DP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID-------- 348 V+R ML HYR PI++ ++ L A+ L + + S + D Sbjct: 287 QVLRFFMLSVHYRHPINYNLELLENAKSGLDRLKTSYENLKHRREVSAELTDNNEEWLEK 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLAREST-----KNHDLLPIFNASAH---ILGIE 395 + + +D NT + I L +L+R++ KN + I S H + Sbjct: 347 IASLKNQFIEEMDDDFNTANGISVLFELSRQANYYLMEKNTSITVIDAFSQHFKEFFEVL 406 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 K + + IE+++ +R+ K + F AD +R +L++ ILED + T Sbjct: 407 GLKLEEAELLDEEIEEMINQRIQARKDRNFQLADELRDKLKAMNIILED------TAQGT 460 Query: 456 RWKQ 459 RWK+ Sbjct: 461 RWKR 464 >gi|322374189|ref|ZP_08048722.1| cysteine--tRNA ligase [Streptococcus sp. C150] gi|321276894|gb|EFX53966.1| cysteine--tRNA ligase [Streptococcus sp. C150] Length = 447 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 171/469 (36%), Positives = 255/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMARSLRDFVPLTENVVNMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + S ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANEAGIST------KELSDKFIAAFMEDTAQLGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 N++ ++I + ++ G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSTLVDKGFAYVSEGDVYFRVAKSKNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TARKENPLDFALWKAAKEGEISWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV----- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPAVL------ 352 V+R + YR+PI+FT + + +AE+ L T + G +D A L Sbjct: 287 --DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTGQVDQAELQTYLDA 344 Query: 353 --SALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISI 407 A+ +D NT + + L +A+ H + F + GI +E L+++ Sbjct: 345 FQEAMDDDFNTANGVTVLFDMAKWINSGHYDQTVKDAFEKVLQVFGIVFKEEVLDED--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K +G R TR Sbjct: 402 -IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|237653707|ref|YP_002890021.1| cysteinyl-tRNA synthetase [Thauera sp. MZ1T] gi|237624954|gb|ACR01644.1| cysteinyl-tRNA synthetase [Thauera sp. MZ1T] Length = 461 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/389 (42%), Positives = 222/389 (57%), Gaps = 31/389 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R F I+P +RMYVCG TVYDF H+G+AR M+VFD++ R LR + Sbjct: 2 LSIYNTLSRSKEAFTPIEPGKVRMYVCGMTVYDFCHLGHARVMVVFDMVARWLRASGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ ++I +T + +D L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAQEN------GESIRQLTDRFIAAMHEDADALGVLRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++ QM LI + G AY A N ++ + YG S + +DE + G RV Sbjct: 114 ATDYVAQMQSLISRLEQKGLAYVAGNRDVCYAVRKFDGYGKLSGKSLDELRAGERVDVAQ 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + EPG W SPWG GRPGWHIECSAMSS LG FDIHGGG+DL Sbjct: 174 DKNDPLDFVLWKHAKVEEPGEVKWASPWGEGRPGWHIECSAMSSDLLGDHFDIHGGGMDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+L+ Sbjct: 234 QFPHHENEIAQSEGA-HGHAFVNYWMHNGFVRVDDEKMSKSLGNFFTIREVLQ------- 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + V+R +L HYR ++++ L +A L++ + + V+ Sbjct: 286 KYDPEVVRFFILRAHYRSALNYSDAHLEDARNALTRLYTALKNVPVAGEPVVDWSEPFAQ 345 Query: 353 ---SALYNDLNTVSAIQALHKLARESTKN 378 +A+ +D NT A+ L +LA E ++ Sbjct: 346 RLRAAMDDDFNTAEAVAVLFELANEVNRS 374 >gi|56708635|ref|YP_170531.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671107|ref|YP_667664.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|254371268|ref|ZP_04987270.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875501|ref|ZP_05248211.1| cysS, cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|61216126|sp|Q5NEL1|SYC_FRATT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123063359|sp|Q14G14|SYC_FRAT1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56605127|emb|CAG46249.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321440|emb|CAL09632.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|151569508|gb|EDN35162.1| hypothetical protein FTBG_01042 [Francisella tularensis subsp. tularensis FSC033] gi|254841500|gb|EET19936.1| cysS, cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159873|gb|ADA79264.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis NE061598] Length = 464 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN+++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANSDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 348 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 349 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 408 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K + AD IR QL+ +G ILED Sbjct: 409 KQGDGADAS-EIEKLIAERTQAKKDKNYVRADEIRNQLQQQGIILED 454 >gi|168187713|ref|ZP_02622348.1| cysteinyl-tRNA synthetase [Clostridium botulinum C str. Eklund] gi|169294420|gb|EDS76553.1| cysteinyl-tRNA synthetase [Clostridium botulinum C str. Eklund] Length = 466 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 171/489 (34%), Positives = 262/489 (53%), Gaps = 57/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y G K Sbjct: 1 MKLFNTMTRQKEEFKPIKDGQVSMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E N + + + Q++ KD L T PR Sbjct: 60 -VNFIQNFTDIDDKMIKKANEE------NITVKELGDRFIQEYYKDADGLNIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ ++I ++++I G+AYE N ++ F+T YG S + +D+ + G R+ Sbjct: 113 ATEYMDEIIEFVRDLIDKGYAYEVNGDVYFNTKQFKEYGKLSGQNLDDLQAGARISIDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W+ PWG+GRPGWHIECS M+ LG DIH GG DL+FPH Sbjct: 173 KKDPMDFAIWKSEKPGEPSWDCPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A+ W+H+ +LN++ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARNGKAFAHYWMHSAYLNIDNKKMSKSLNNFFTTREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------------------EILLSKWPQTS---- 341 V+RL ML HYR P++F+ + L A E+ + K + Sbjct: 285 EVVRLFMLSAHYRTPLNFSNELLQSAKASNERLYNAIGNLERLLDEVKIDKITEDEKEYV 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + + +D NT AI + L ++ N + L + Sbjct: 345 KNLNSYKEKYIEKMDDDFNTADAIAVIFDLVKDINTNINTESSKELVEYSLELIRELGKP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ +++ IEKL+++R K + ++ AD IR L+++G +LED P Sbjct: 405 LGI--LQKSTILDLNTEIEKLIEQRQQARKDRDWALADKIRDDLKARGIVLED--TP--- 457 Query: 452 QRMTRWKQK 460 + RWK++ Sbjct: 458 -QGVRWKKE 465 >gi|270307505|ref|YP_003329563.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. VS] gi|270153397|gb|ACZ61235.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. VS] Length = 457 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 180/479 (37%), Positives = 249/479 (51%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++ ++MYVCG T HIG+A I FDV+ R L Y G + Sbjct: 1 MKIYNTLSGKLEEFVPLEDGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLSYK-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKII +A + PS + +N F+ L + Sbjct: 60 -VKYIQNFTDIDDKIIAKANAQGIEPST--------LAERNIGVFLDAMAALNITPADYY 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++I ++ +I G+AYEA + + YG S R +++ G RV Sbjct: 111 PRATQEVPKIIEMVSGLIEKGYAYEAGGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEID 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIF Sbjct: 171 EEKEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQVDIHGGGQDLIF 230 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + Sbjct: 231 PHHENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALS-------RY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-------TSKGIIDPAVLSAL 355 A +R+ +L + YR P+ ++ + L AE + QT+ +++ +D Sbjct: 284 SADALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARQDNPQSNETNVDVKTYRER 343 Query: 356 Y-----NDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILG--IEVCKEHL 401 + ND NT +A+ + L+R E K+ D +F A ILG +++ + Sbjct: 344 FTQYMDNDFNTSAALATIFDLSRELNRIEAEGGKSTDGQKLFKELADILGLSLKIAEPET 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R L K++ AD IR L+S G +LED T WK K Sbjct: 404 GTDAVPFIELLIELRKDLRLAKQYQLADKIRTSLDSAGILLEDSAGG------TVWKAK 456 >gi|94310030|ref|YP_583240.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] gi|93353882|gb|ABF07971.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] Length = 491 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 258/466 (55%), Gaps = 40/466 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR Sbjct: 31 QQLNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGY 90 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+NITDIDDKII RA + + I +T++ Q +D T L + P ++ Sbjct: 91 D--VTYVQNITDIDDKIIRRAAEN------GETIGQLTTRFIQYMHEDATALGVIRPDYE 142 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I+ + G AY+A + ++ + P YG S + +++ + G RV Sbjct: 143 PRATEYVPQMLNIIEKLEAKGLAYQATDGDVNYSVRKFPGYGKLSGKSLEDLRAGERVNA 202 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W+S WG GRPGWHIECSAMS LG+ FDIHGGG Sbjct: 203 NDAKQDPLDFVLWKSAKATEPPESKWDSKWGSGRPGWHIECSAMSCTLLGEHFDIHGGGA 262 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A N+W+HNGF+ + KMSKS GNF TI ++L Sbjct: 263 DLQFPHHENEIAQSEGASG-RPFVNMWMHNGFVRVNDEKMSKSLGNFFTIRDVL------ 315 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID------ 348 + + A V+R +L HYR P++++ L +A L++ +T +D Sbjct: 316 -KEYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKETQPGGCAVDWEESHA 374 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIE-------VCKE 399 A+ +D NT A+ L LA E + + A LG+ + Sbjct: 375 KRFAEAMNDDFNTPIAMSVLFDLASEVNRTGSVAAAHQLKALGGTLGLLERDPHTFLQGG 434 Query: 400 HLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 H+ ++S IE + R + F+ AD IR +L G +LED Sbjct: 435 HVAGSLSGEQIEAQIAARRAAKAARNFAEADRIRAELLEAGVVLED 480 >gi|56961911|ref|YP_173633.1| cysteinyl-tRNA synthetase [Bacillus clausii KSM-K16] gi|61216140|sp|Q5WLT3|SYC_BACSK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56908145|dbj|BAD62672.1| cysteinyl-tRNA synthetase [Bacillus clausii KSM-K16] Length = 466 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 174/486 (35%), Positives = 255/486 (52%), Gaps = 54/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N+L K F I+ ++MY CGPTVY++ HIGNARP IV+D++ R L Y + Sbjct: 2 IKLFNSLTNKKEPFVPIEEGKVKMYCCGPTVYNYIHIGNARPPIVYDMVRRYLTYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V N TD+DDKII A + + + ++ + + + + DT L PR Sbjct: 61 -VTFVSNFTDVDDKIIRAANE------LGEEVAAVAERFIKAYYADTCALNVKEADLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I ++ G AYEA ++ F T YG S + +D+ + G R+ Sbjct: 114 VTETMDDIIAFIADLEKKGFAYEAGGDVYFRTRKFNGYGKLSGQALDDLQSGARIEVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P E W SPWG GRPGWHIECSAM LG DIH GG DL FPH Sbjct: 174 KEDPLDFVLWKAAKPNEISWSSPWGEGRPGWHIECSAMIKKSLGDTIDIHAGGKDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS +K AN W+HNGF+N+ KMSKS GNF+ +++++ + Sbjct: 234 HENEIAQSEALTG-KKLANYWMHNGFVNINNEKMSKSLGNFVLAHDIIQ-------QYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDPAVLSA-------- 354 V+R ML HYR PI+F+ + L AE L + T + + + A + A Sbjct: 286 EVVRFFMLTAHYRTPINFSDELLKGAEAGLERLKNTVANLQHRLAETADMGAEEEWLEKI 345 Query: 355 ----------LYNDLNTVSAIQALHKLARE---------STKN--HDLLPIFNASAHILG 393 + +D N+ +AI L LA+E ++K + L +F +LG Sbjct: 346 AGAKQRFIEEMDDDFNSANAISVLFDLAKEANIYMSEAQTSKKVLNAFLELFAEFGEVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + ++ + + IE L++ER + K + F+ AD IR L+ K +LED P Sbjct: 406 VSFTQQE-EELLDAEIEALIEERNVARKERNFARADEIRDLLKEKNIVLED--TPQG--- 459 Query: 454 MTRWKQ 459 RWK+ Sbjct: 460 -VRWKR 464 >gi|126654401|ref|ZP_01726146.1| cysteinyl-tRNA synthetase [Bacillus sp. B14905] gi|126589151|gb|EAZ83335.1| cysteinyl-tRNA synthetase [Bacillus sp. B14905] Length = 466 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 177/488 (36%), Positives = 261/488 (53%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R +Y + Sbjct: 3 IQIFNSLSRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYFQYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII+ A + + + + +T + + +D T L C PR Sbjct: 62 -VKFVSNFTDVDDKIIKAANE------LGEEVHELTERFIAAYFEDVTALGCKKADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +I IQ +I G+AYE+ ++ + T YG S + +D+ K+G R+ Sbjct: 115 VTEHMTDIIQFIQILIEKGYAYESAGDVYYRTRKFNGYGKLSHQSVDDLKIGARIEAGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K + DF LWK + P E WESPWG GRPGWHIECS M+ +LG DIH GG DL FPH Sbjct: 175 KDDALDFALWKAAKPGEIFWESPWGNGRPGWHIECSVMAREHLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS + +KT A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 235 HENEIAQSEAHN--DKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------KQID 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 V+R ML HYR PI+F ++R+ A + T+ S G L+ Sbjct: 286 PQVLRFFMLSVHYRHPINFAKDLVEAAAAGLERIRTAYNNVKHRLTTTVSLGDHSDEWLN 345 Query: 354 -----------ALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHI 391 A+ +D NT + I L +LAR E+ +L F + Sbjct: 346 KITEQKAQFEEAMDDDFNTANGISVLFELARIANIYLNETNTCKKVLETFIETFEVLGDV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI+ K + + I+ L+QER+ K + F+ +D IR L+++G ILED + Sbjct: 406 LGIKFAK--EEELLDEEIDALLQERVEARKNRDFARSDEIRDHLQAQGIILEDTRQG--- 460 Query: 452 QRMTRWKQ 459 TRWK+ Sbjct: 461 ---TRWKR 465 >gi|254388528|ref|ZP_05003762.1| cysteinyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|294814057|ref|ZP_06772700.1| Cysteinyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064] gi|326442461|ref|ZP_08217195.1| cysteinyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|197702249|gb|EDY48061.1| cysteinyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|294326656|gb|EFG08299.1| Cysteinyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064] Length = 466 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 172/488 (35%), Positives = 257/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTSARQIRDFTPLVPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII++ A Q P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIKKSAEQGRPWWSIG-------YENERAFNAGYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M+ +++ +I GHAYEA + FD S P Y S + +++ + E Sbjct: 114 RATGHITEMVEMMRGLIERGHAYEAEGNVYFDVRSFPGYLQLSNQDLEDLRQPAGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDL+FP Sbjct: 173 GKRDPRDFAMWKAVKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGLDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAFG--DEFARYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KHWK 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--GIIDPAV------L 352 V+R + HYR I+++ + L EAE ++ + Q K G ++PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIVGFMQRVCEKAGGAVEPAAEVPLAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASAHILGIEVCKEH--- 400 A+ +DL A+ +H R+ L A +LG++ H Sbjct: 344 EAMDDDLGVPQALAVIHTTVRQGNSALAADDKETAAARLAEVRAMLGVLGLDPFDPHWAG 403 Query: 401 -------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 L+ + + ++Q+R K +++AD IR QL+ G ++ED G Sbjct: 404 EAESGEDLHGAVDTLVRLVLQQREAARGRKDWATADAIRDQLQQSGLVIED------GPE 457 Query: 454 MTRWKQKP 461 TRW P Sbjct: 458 GTRWSLGP 465 >gi|147668707|ref|YP_001213525.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. BAV1] gi|187629809|sp|A5FP90|SYC_DEHSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146269655|gb|ABQ16647.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. BAV1] Length = 457 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 175/463 (37%), Positives = 244/463 (52%), Gaps = 40/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++ ++MYVCG T HIG+A I FDV+ R L Y G + Sbjct: 1 MKIYNTLSGKLEEFVPLENDKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLTYK-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKII +A + PS + +N F+ L + Sbjct: 60 -VKYIQNFTDIDDKIIAKANAQGIEPST--------LAERNIGVFLDAMAALNITPADYY 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++I ++ +I G+AY + + + YG S R +++ G RV Sbjct: 111 PRATQEVPKIIEIVSGLIDKGYAYAVDGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEID 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIF Sbjct: 171 EEKEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIF 230 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + Sbjct: 231 PHHENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALS-------RY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------IIDPAVLSAL 355 A +R+ +L + YR P+ ++ + L AE + QT+ K +D Sbjct: 284 SADALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARKDNPQFKETTVDTKAYRER 343 Query: 356 Y-----NDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIE--VCKEHL 401 + ND NT +A+ + L+R E+ K+ D +F A ILG+ V + Sbjct: 344 FTQYMDNDFNTSAALATIFDLSRELNRIEGEAGKSTDGQKLFKELADILGLSLIVAESKT 403 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ IE L++ R L K++ AD IR L++ G +LED Sbjct: 404 GTDVAPFIELLIELRKDLRVAKQYQLADKIRTSLDTAGILLED 446 >gi|322381145|ref|ZP_08055148.1| cysteinyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154721|gb|EFX46992.1| cysteinyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 461 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/485 (36%), Positives = 257/485 (52%), Gaps = 55/485 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 ++NT+ R+ EF+ + P + MYVCGPTVY++ HIGN RP I FDV++R L Y + V Sbjct: 1 MFNTMTREKEEFKPVVPGKVSMYVCGPTVYNYIHIGNGRPAIFFDVVHRYLTYLGYD--V 58 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV N TD+DDK+I +A + + + + + + +++D L PR T Sbjct: 59 TYVVNFTDVDDKLIRKAEE------TGETVKELADRFIEAYLEDMEALGIRKADINPRVT 112 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++ ++I I++++ G+AYE ++ + T +YG S + +DE + G R+ K+ Sbjct: 113 ENMDEIISFIRSLVDKGYAYENGGDVFYRTQKFADYGKLSHQNLDELQYGIRIEVDERKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF+LWK + P E W SPWG GRPGWHIECSA+ YLG+ DIHGGG+DL FPHHE Sbjct: 173 NPQDFVLWKAAKPGEVYWSSPWGNGRPGWHIECSALVHKYLGETIDIHGGGVDLTFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 EIAQ+ A + A W+HN FLN++ KMSKS GN + + E+L+ K V Sbjct: 233 CEIAQT-EALTCKPMAKYWLHNAFLNIDNEKMSKSLGNGVLVREILKRVK-------PQV 284 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVL----- 352 +RL M+M HYR I+F L +A L + + T+ +G D V Sbjct: 285 LRLFMMMAHYRNQINFNSDGLEQAANGLERIMNSVTNLKHRLKIAQEGPADEQVKNRIQA 344 Query: 353 ------SALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILGIE 395 + + +D NT AI A+ +L E+ LL F + +LGI Sbjct: 345 IKAQFEAKMNDDFNTPDAITAVFELVSEANNTLKEERVNVSTLEMLLDQFKSFDTVLGIL 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +E + IEKL+ ER + K ++ AD IR L KG +LED P Sbjct: 405 EPEE--TDLMDEEIEKLIAERTEARRAKNWARADEIRDILTEKGILLED--TPQG----I 456 Query: 456 RWKQK 460 RW+QK Sbjct: 457 RWRQK 461 >gi|312874864|ref|ZP_07734883.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|325912411|ref|ZP_08174806.1| cysteine--tRNA ligase [Lactobacillus iners UPII 143-D] gi|311089609|gb|EFQ48034.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|325475753|gb|EGC78924.1| cysteine--tRNA ligase [Lactobacillus iners UPII 143-D] Length = 470 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 178/477 (37%), Positives = 262/477 (54%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + I+E + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGRLSGQNIEELEEGASQHVSVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQT 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAEAVLKRYKNILRNIQERLSEKNDVSDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST----------KN-HDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L+ KN D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELSLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ E N + ++KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TVQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED 458 >gi|110803392|ref|YP_699686.1| cysteinyl-tRNA synthetase [Clostridium perfringens SM101] gi|122956489|sp|Q0SQC1|SYC_CLOPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110683893|gb|ABG87263.1| cysteine--tRNA ligase [Clostridium perfringens SM101] Length = 466 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 253/488 (51%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y G K Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEEGITV------KKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFEGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILE-------RYDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDP-----------AVL 352 VIR ML HYR+ ++F+ L A+ + + + + +ID A L Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 353 SALY-----------NDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 +L +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ ++ N+ IE L+ +R K + F+ AD IR +L+ +G +LED P Sbjct: 406 LGM--FQKSTKGNLEEEIEALIAKRQQARKDRDFALADKIRDELKDRGIVLED--TP--- 458 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 459 -QGVRWKR 465 >gi|312868029|ref|ZP_07728233.1| cysteine--tRNA ligase [Streptococcus parasanguinis F0405] gi|311096433|gb|EFQ54673.1| cysteine--tRNA ligase [Streptococcus parasanguinis F0405] Length = 447 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/466 (37%), Positives = 248/466 (53%), Gaps = 35/466 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMDDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLS----- 353 V+R HYR+PI+FT + + +AE L T G +DPA L Sbjct: 288 ---GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGEVDPADLQGFVDK 344 Query: 354 ---ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 A+ D+N + I + +LA+ H + +A +L + + + IE Sbjct: 345 FIVAMDEDINAANGITVVFELAKWINSGHYNQDVKDALTKML-EVFGVVFVEEVLDADIE 403 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+ ER K F+ AD IR +L ++G L D K G R TR Sbjct: 404 ALIAERQEARAKKDFARADAIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|239942334|ref|ZP_04694271.1| cysteinyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] gi|239988799|ref|ZP_04709463.1| cysteinyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379] gi|291445792|ref|ZP_06585182.1| cysteinyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998] gi|291348739|gb|EFE75643.1| cysteinyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998] Length = 466 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 168/471 (35%), Positives = 251/471 (53%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLHDTSARQIRDFVPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIAKSAEQGRPWWSIG-------YENERAFNDGYDVLGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+P+MI +++ +I GHAYEA+ + FD S+P Y S +++D+ + + E Sbjct: 114 RATGHVPEMIEMMRGLIERGHAYEADGNVYFDVRSLPGYLELSNQELDDLRQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DLIFP Sbjct: 173 GKRDPRDFAMWKAVKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGIDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + AN W+HNG++ L G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAYG--DTFANYWVHNGWVTLAGEKMSKSLGNSVLVSEMV-------KHWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLS-----------KWPQTSTSKGIIDPAVL 352 V+R + HYR I+++ + L EAE + K +T + PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVTEKVGETVAPAADVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCK----- 398 A+ DL A+ +H R+ L A +LG++ Sbjct: 344 EAMDEDLGVPQALAIIHTTVRQGNSALAADDKEAAAARLAEVRAMLGVLGLDPLDPQWAG 403 Query: 399 -----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++ +R K +++AD IR QL G ++ED Sbjct: 404 EGDRGEDLHGVVDTLVRLVLDQRQSARARKDWAAADAIRDQLNQSGLVIED 454 >gi|126660010|ref|ZP_01731132.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] gi|126618688|gb|EAZ89435.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] Length = 482 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 180/485 (37%), Positives = 257/485 (52%), Gaps = 61/485 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL RK F I+ ++MY CG TVYD+ H+G+AR I++DV+ R L+++ Sbjct: 3 LTVYNTLTRKKEPFTTIEEGKVKMYCCGITVYDYCHLGHARTCIIWDVVRRYLQWH--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY++N TDIDDKI+ RAR+E ++ ++ + + + +D RL PR Sbjct: 61 NVTYIQNFTDIDDKILNRARKEKTTM------EAVSERFIEAYFEDMERLGVQKADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + L+ + G+AY +N ++ ++ YG S RK+++ + G RV Sbjct: 115 ATHTLNGIQRLVSELEAKGYAYASNGDVYYNVHQFKPYGKLSGRKLEDLQAGASGRVNLE 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E KK+PADF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DSEASKKKDPADFAVWKSAKPGEPAWDSPWGKGRPGWHIECSAMVRERLGETIDIHVGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELLE Sbjct: 235 DLIFPHHENEIAQSEAATG-QPLARYWLHNGMVKVGGEKMSKSLGNFTTIRELLE----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSKGIIDPA 350 +RL +L HYR+P+DFT + L A E LL + +T D Sbjct: 289 --KIDPMAVRLFILQAHYRKPVDFTDEALAAATNGWQTLSEGLLFGFQHGTTLGFKGDML 346 Query: 351 VL---------SALYNDLNTVSAIQALHKLARESTKNHDLLP-----------------I 384 L +A+ +D N + L ++A+E K +LL Sbjct: 347 ELLPKFVKRFNNAVDDDFNFAGGLAVLFEIAKELRKEGNLLVHQGNTETNSEILEKQWYT 406 Query: 385 FNASAHILGIEVCKEHLNKNIS-----IAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A +LG+E + L S AIE L+++R K K F+ +D IR +L+ +G Sbjct: 407 LRTLASVLGLEADRNQLQSEPSDGLNDTAIETLIEQRKEARKNKNFAESDRIRDELKEQG 466 Query: 440 FILED 444 IL D Sbjct: 467 IILVD 471 >gi|116512729|ref|YP_811636.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] gi|123125354|sp|Q02WZ9|SYC_LACLS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116108383|gb|ABJ73523.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] Length = 448 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 256/462 (55%), Gaps = 40/462 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A E+ S ++ + F +DT L + P+ Sbjct: 60 -VEYISNFTDVDDKIIKAAVSENISTKE------LSERYIAAFYEDTDLLNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I MI IQ ++ +AY + ++ F + NY + + + + G R E+ Sbjct: 113 ATEFIEAMIDFIQELLDKDYAYISEGDVYFRVAKSKNYAKLANKNLADLLAGASGRTDEE 172 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++PADF LWK E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TNLKESPADFALWKSVKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A +K N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQS-EAKTGQKFVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVV------ 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGIIDPAVLSALYND 358 ++R + THYR P++FT LTEAE + K + + + L+ ND Sbjct: 286 -DPQILRFFLATTHYRRPLNFTDDALTEAENNIKKIENAYRHLDDQAESNLSALTTFRND 344 Query: 359 LNTVSAIQALHKLARESTKNHDLL-------------PIFNASAHILGIEVCKEHLNKNI 405 V+A+ +A T +D + F+ ILGI K + +++ Sbjct: 345 F--VAAMDEDFNIANGMTVFYDFVSWVNKGNGGAEVKAFFDQVLEILGI---KFEIEQSL 399 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE +++ R + +++ F+ +D IR L+++G +LED K+ Sbjct: 400 DSEIEAMIEARQLAREVRDFAKSDEIRDALKAQGIVLEDTKD 441 >gi|69245493|ref|ZP_00603457.1| Cysteinyl-tRNA synthetase, class Ia [Enterococcus faecium DO] gi|257879803|ref|ZP_05659456.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257882529|ref|ZP_05662182.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257891644|ref|ZP_05671297.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|257894121|ref|ZP_05673774.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|258614229|ref|ZP_05711999.1| cysteinyl-tRNA synthetase [Enterococcus faecium DO] gi|260559477|ref|ZP_05831658.1| cysteinyl-tRNA synthetase [Enterococcus faecium C68] gi|261206628|ref|ZP_05921326.1| cysteinyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289564989|ref|ZP_06445443.1| cysteinyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|293564124|ref|ZP_06678530.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1162] gi|293570060|ref|ZP_06681140.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1071] gi|294614954|ref|ZP_06694845.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1636] gi|294618278|ref|ZP_06697860.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1679] gi|294623060|ref|ZP_06701947.1| cysteinyl-tRNA synthetase [Enterococcus faecium U0317] gi|314940063|ref|ZP_07847246.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|314942530|ref|ZP_07849369.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|314949364|ref|ZP_07852705.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0082] gi|314952824|ref|ZP_07855796.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|314993743|ref|ZP_07859088.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|314994808|ref|ZP_07859940.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|68195744|gb|EAN10181.1| Cysteinyl-tRNA synthetase, class Ia [Enterococcus faecium DO] gi|257814031|gb|EEV42789.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257818187|gb|EEV45515.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257828004|gb|EEV54630.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|257830500|gb|EEV57107.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|260074576|gb|EEW62897.1| cysteinyl-tRNA synthetase [Enterococcus faecium C68] gi|260079121|gb|EEW66814.1| cysteinyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289163196|gb|EFD11042.1| cysteinyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|291587432|gb|EFF19316.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1071] gi|291592240|gb|EFF23858.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1636] gi|291595494|gb|EFF26805.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1679] gi|291597533|gb|EFF28697.1| cysteinyl-tRNA synthetase [Enterococcus faecium U0317] gi|291604042|gb|EFF33570.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1162] gi|313590992|gb|EFR69837.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|313591843|gb|EFR70688.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|313595058|gb|EFR73903.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|313598751|gb|EFR77596.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|313640663|gb|EFS05243.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|313644195|gb|EFS08775.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0082] Length = 470 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 263/493 (53%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + P + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANELGITAPE------VADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQS-EAKTGKKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L K+ Q + S+ + D A Sbjct: 286 KNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPKVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFVRSDEIRDLLKEKGILLED--T 460 Query: 448 PDNGQRMTRWKQK 460 P TRW+++ Sbjct: 461 PQG----TRWRRE 469 >gi|324992446|gb|EGC24367.1| cysteine--tRNA ligase [Streptococcus sanguinis SK405] gi|327462791|gb|EGF09113.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1057] Length = 447 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 173/468 (36%), Positives = 252/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVCRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKGIIDPAVL--- 352 V+R HYR+PI+FT + + +A L + P T ++ A L Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQAESAQLQAFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTSEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|258509321|ref|YP_003172072.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus GG] gi|257149248|emb|CAR88221.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus GG] gi|259650602|dbj|BAI42764.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus GG] Length = 468 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 182/492 (36%), Positives = 264/492 (53%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A + + P++ A I + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIITAAHKTGEA-PLDLAQRFIDA-----FMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 A+ IP ++ +Q++I G+AY + ++ + +YG S + +DE + G E Sbjct: 114 ASQMIPDIVDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQE 173 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK +P DF LWK + P E W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELDKKEDPIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A ++ W+HNGF+ + + +KMSKS GNFIT++++L+T Sbjct: 234 EFPHHENEIAQS-EAKTGKQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTVD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 V+R M T YR PI ++ L A L++ Q Sbjct: 291 -----PQVLRFFMAGTQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAVAGVDAQ 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKN---HDLLPIFNAS 388 + + ++A+ +D+N + + L LA+ ++ K +DLL ++A Sbjct: 346 ITAELKTLKDRFIAAMDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ N+ I+ LV+ R + K F+ +D IR QL ++G ILED Sbjct: 406 LQIFGVVFTDP---TNLDANIDALVKARDVARAAKDFAKSDEIRDQLAAQGIILEDTP-- 460 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 461 ----QGTRWRRK 468 >gi|229542225|ref|ZP_04431285.1| cysteinyl-tRNA synthetase [Bacillus coagulans 36D1] gi|229326645|gb|EEN92320.1| cysteinyl-tRNA synthetase [Bacillus coagulans 36D1] Length = 465 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 174/473 (36%), Positives = 251/473 (53%), Gaps = 53/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL RK F ++ ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IQIYNTLTRKKEPFIPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLAFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A++ +P ++ + + + +D L C PR Sbjct: 62 -VNYVSNFTDVDDKLIKAAKERGEEVPA------LSERFIKSYFEDIDALGCCHADAHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I+ +I GHAYE+ ++ + T S P+YG S + IDE K G R+ Sbjct: 115 VTENMDAIIAFIEKLIEKGHAYESGGDVYYHTRSFPDYGKLSHQSIDELKSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMAKKYLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS D+ A W+HNG++N++ KMSKS GN + +++++E R P Sbjct: 235 HENEIAQSEALTDK--PFARYWMHNGYINIDNEKMSKSLGNIVLVHDIIE------RHDP 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL------------------------SKWPQ 339 V+R ML HYR PI+++ + L A+ L KW + Sbjct: 287 -QVLRFFMLSVHYRHPINYSEELLANAKAGLERIKTSYQNVKHRLESSANLAEDDEKWLE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHI 391 S + + A+ +D NT + I L +L++++ T L I Sbjct: 346 QVRS---LHRQFIEAMDDDFNTANGISVLFELSKQANYYLRGKNTTETVLRAFMKEFETI 402 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G+ K + IE L+++R K + F AD IR +L+S ILED Sbjct: 403 SGVLGLKLEEEVLLDEEIEALIEKRNEARKARNFQLADEIRDKLKSMNIILED 455 >gi|150015023|ref|YP_001307277.1| cysteinyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] gi|187629800|sp|A6LPP1|SYC_CLOB8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149901488|gb|ABR32321.1| cysteinyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] Length = 466 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/487 (36%), Positives = 258/487 (52%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL R+ EF I ++MYVCGPTVY+F HIGN R IVFD + R L Y G K Sbjct: 1 MRVFNTLTRQKEEFIPIITGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I +A E ++ + K +++ +D L T PR Sbjct: 60 -VRFVQNFTDIDDKMINKANDEGITV------KELGDKYIKEYYQDADSLKIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I ++ +I G AYE + ++ + T NYG + +D+ ++G R+ Sbjct: 113 ATEYIHDIIKFVEELIEAGFAYEVDGDVYYSTKKFDNYGRLVGQNLDDLQVGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ LG DIH GG+DL FPH Sbjct: 173 KKDPMDFAVWKAQKPGEPAWESPWGPGRPGWHIECSCMAKKLLGDTIDIHAGGMDLRFPH 232 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT AN W+H F+N++ +KMSKS NF T E+LE + Sbjct: 233 HENEIAQSEAL--TGKTFANYWLHAAFVNVDNKKMSKSLNNFFTAREVLE-------EYS 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPA---- 350 + IR ML HYR I+FT + L A+ + + + +K ++D A Sbjct: 284 SDAIRFLMLSGHYRIQINFTKELLDSAKSSIERLYNCINNLENLKDEVTKKLMDEAEEKY 343 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASAHILG- 393 + + +D NT AI L L ++ + +L + LG Sbjct: 344 LKSLDKYREKFIEKMDDDFNTADAISVLFDLTKDINNNVNINSSSELCEKAESMVRELGN 403 Query: 394 -IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + + ++ + K++ I++L+++R K K F+ AD IR L+S+ ILED P Sbjct: 404 PLGILQDRIEKDLETEIQELIEKRQQARKNKDFALADKIRDDLKSRNIILED--TP---- 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKK 464 >gi|282601150|ref|ZP_05980914.2| cysteine--tRNA ligase [Subdoligranulum variabile DSM 15176] gi|282570019|gb|EFB75554.1| cysteine--tRNA ligase [Subdoligranulum variabile DSM 15176] Length = 464 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 185/475 (38%), Positives = 258/475 (54%), Gaps = 56/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NT+ R+ EF R+YVCGPTVY++ HIGNARPMIVFD L R L Y G K Sbjct: 1 MQIFNTMTRQKEEFVPQKEGEYRIYVCGPTVYNYIHIGNARPMIVFDTLRRYLEYC-GNK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDK+I++ +QE S+ + K +++KD+ L PT +PR Sbjct: 60 -VYYVSNITDIDDKLIQKGQQEGISM------QEVARKFEAEYIKDSEGLNVEEPTVRPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++++++ GHAY A N ++ F S P YG S +D+ + G R Sbjct: 113 ATEHIGEIIKIVKDLVDSGHAYVARNGDVYFRVKSDPGYGKLSHLNLDDLESGNRTLRSQ 172 Query: 184 H----KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++PADF +WK + P EP WESPWG GRPGWHIECSAM+ +LG D+H GG D Sbjct: 173 MDDDLKEDPADFAVWKAAKPGEPYWESPWGHGRPGWHIECSAMARKHLGNTIDLHAGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS CA+ + W+HNGFLN+ KMSKS GNF T+ E+ E K+G Sbjct: 233 LIFPHHENEIAQSECANGC-TFSRYWMHNGFLNINNEKMSKSAGNFFTVREIAE--KYGY 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-------- 351 IR ML YR P+++TV + + L + T + +D A+ Sbjct: 290 EP-----IRYFMLTAGYRMPLNYTVDLIESCKNSLER---LYTCRDNLDFAIEHAHGTDT 341 Query: 352 -------------LSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASA 389 +A+ +DLNT A+ A+ +E D F+ Sbjct: 342 ALAAKCEEARTKFKTAMDDDLNTPDALAAVFDFVKEINTLSDASDKATLELAAKTFDELT 401 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ ++ + + LV+ER K K ++ AD IR QL G+ + D Sbjct: 402 GVLGLLYNRK--KDEVPADVTALVEERAAAKKAKDWAKADAIRAQLTEMGWSVTD 454 >gi|169834403|ref|YP_001694075.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] gi|168996905|gb|ACA37517.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] Length = 457 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/468 (37%), Positives = 252/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 12 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 71 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 124 VVEFMDDIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 184 TARKENPVDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 244 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 296 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 355 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + ++A+ ++ N+D + I GI +E L+ Sbjct: 356 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAE---- 411 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 412 IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTK---DGVRWTR 456 >gi|116333230|ref|YP_794757.1| cysteinyl-tRNA synthetase [Lactobacillus brevis ATCC 367] gi|122270082|sp|Q03SU6|SYC_LACBA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116098577|gb|ABJ63726.1| cysteinyl-tRNA synthetase [Lactobacillus brevis ATCC 367] Length = 470 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 179/496 (36%), Positives = 262/496 (52%), Gaps = 68/496 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ F+ I P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 LKVFNTMTRQKETFEPITPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A +E ++P + + F +DT L T PR Sbjct: 61 -VKYVSNFTDVDDKMINEANKEGITVPE------LGDRFIAAFKEDTAALNIEPATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 AT HI ++I +Q++I +AY + ++ + +YG + +D+ + G T Sbjct: 114 ATEHINEIIEFVQDLIDKDYAYPVDGDVYYRAHKFSHYGELAHLNLDDLEEGASQHTNDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W SPWG GRPGWHIECS MS+HYLG+ FDIHGGG DL Sbjct: 174 ETARKEDPVDFALWKGAKPGEISWPSPWGAGRPGWHIECSVMSTHYLGETFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 IFPHH+NEIAQS + KT + W+HNGF+ + + KMSKS GNF+T++++L+T Sbjct: 234 IFPHHQNEIAQSEA--KTGKTFVHYWLHNGFVTIGDDNEKMSKSLGNFVTVHDILKTVD- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------DP 349 +R M T YR PI +T Q L AE L + + G DP Sbjct: 291 ------PQTLRFFMSTTQYRRPIQYTQQNLDTAERNLERLQTAYDNMGYRLKDAEAGNDP 344 Query: 350 AV-----------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK 398 V + A+ +D N + I +H+LAR + +F + ++ + Sbjct: 345 KVEQETRQIVADYIDAMDDDFNVQNGIAKVHELARLGNVYAERPVVFAGT-----LDFIR 399 Query: 399 EHLNKNISI--------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + L+ +S+ I+ L+ ERL K + F +D IR+QL+S+G ILED Sbjct: 400 QTLSDLLSVFGIKFAAAATLDDDRIQALIDERLAARKSRDFLRSDEIREQLKSQGIILED 459 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW+++ Sbjct: 460 TP------QGTRWRKE 469 >gi|302544419|ref|ZP_07296761.1| cysteine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653] gi|302462037|gb|EFL25130.1| cysteine-tRNA ligase [Streptomyces himastatinicus ATCC 53653] Length = 466 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 171/474 (36%), Positives = 252/474 (53%), Gaps = 56/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTGARQIRDFSPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKII + A Q P I A N + F L CL PT++P Sbjct: 62 -VTFVRNVTDIDDKIIAKSAEQGRPWWSIGYA-------NERAFTSAYDVLGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-- 181 RAT HIP+MI +++ +I GHAY A + FD S P Y S + +D G R P Sbjct: 114 RATGHIPEMIEMMRGLIDRGHAYAAEGNVYFDVRSYPEYLRLSNQDLD----GLRQPSGE 169 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DL Sbjct: 170 GETGKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGVDL 229 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + Sbjct: 230 IFPHHENEIAQAKGFG--DDFATYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------K 280 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--------GIIDP 349 W V+R + HYR I+++ + L EAE ++ + Q T K + P Sbjct: 281 RWRPIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFIQRVTEKAGKAVPAAADVPP 340 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH 400 A A+ +DL A+ +H R+ L A +LG++ +H Sbjct: 341 AFAEAMDDDLGVPQALAVVHTTVRQGNSALTADDKEAAVARLAEVRAMLGVLGLDPLDDH 400 Query: 401 ----------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++++R K +++AD IR QL+ G ++ED Sbjct: 401 WSGGSDRGEDLHGVVDSLVRLVLEQRQAARGRKDYATADAIRDQLQQSGLVIED 454 >gi|125718833|ref|YP_001035966.1| cysteinyl-tRNA synthetase [Streptococcus sanguinis SK36] gi|125498750|gb|ABN45416.1| Cysteinyl-tRNA synthetase, putative [Streptococcus sanguinis SK36] Length = 447 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/468 (37%), Positives = 254/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKGIIDPAVL--- 352 V+R HYR+PI+FT + + +A L + P T ++ A L Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQAESAQLQAFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKGALAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|319762811|ref|YP_004126748.1| cysteinyl-tRNA synthetase [Alicycliphilus denitrificans BC] gi|330824891|ref|YP_004388194.1| cysteinyl-tRNA synthetase [Alicycliphilus denitrificans K601] gi|317117372|gb|ADU99860.1| cysteinyl-tRNA synthetase [Alicycliphilus denitrificans BC] gi|329310263|gb|AEB84678.1| cysteinyl-tRNA synthetase [Alicycliphilus denitrificans K601] Length = 458 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 161/391 (41%), Positives = 225/391 (57%), Gaps = 36/391 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + +F ++ ++RMYVCG TVYD H+G+AR MI FDV+ R LR Sbjct: 3 LRIYNTLSRALEDFSPLEAGHVRMYVCGMTVYDLCHLGHARSMIAFDVVQRWLRA--SGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I +T + +D L PTH+PR Sbjct: 61 AVTYVRNITDIDDKIIRRAVEN------GETIRSLTDRMIDALHEDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV + Sbjct: 115 ATEYVPQMLSMIGTLQSRGLAYQAANGDVNYAVRKFPGYGRLSGKSLDELNAGERVAVQD 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + P EP W+S +G GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKLDPLDFVLWKGAKPEEPAEVKWQSAYGEGRPGWHIECSAMGCTLLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A +W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 AFPHHENEIAQSEGATG-KPFARVWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A +R ++ +HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 EYDAETVRFFVVRSHYRSPLNYSDVHLDDARAALKR---LYTALSLVAPAPVAIDWAEPH 343 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKN 378 +A+ D T A+ L LA E ++ Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFDLAGEVNRS 374 >gi|283795457|ref|ZP_06344610.1| cysteine--tRNA ligase [Clostridium sp. M62/1] gi|291077118|gb|EFE14482.1| cysteine--tRNA ligase [Clostridium sp. M62/1] gi|295091141|emb|CBK77248.1| cysteinyl-tRNA synthetase [Clostridium cf. saccharolyticum K10] Length = 469 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 189/495 (38%), Positives = 263/495 (53%), Gaps = 67/495 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRQKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E DA I+ + + KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIRKAIEEGV-----DA-QTISERYIAECKKDMEMMNVKPATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M +IQ +I GHAY A + + F T S YG S + +++ + G R V Sbjct: 113 ATEEICGMEEMIQELIDKGHAYVAKDGTVYFRTKSFKEYGKLSHKNLEDLQSGFRELKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG DIH GG DL Sbjct: 173 GEEDKEDPTDFVLWKPKKDGEPFWESPWCEGRPGWHIECSVMSKKYLGDSIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 VFPHHENEIAQSEAANG-KPFAKYWMHNAFLNIDNKKMSKSLGNFRTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTS 343 + V+R ML HYR P++F+ V+RL + LL+K + S Sbjct: 285 QYDLQVLRFFMLSAHYRSPLNFSAELMEASRNGLERILTGVERLRD---LLAKAAEKEMS 341 Query: 344 ----KGIIDPAVL-----SALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPI 384 + + A L +A+ +D NT AI A+ ++ + ES++ + +L Sbjct: 342 GEERRNLETAAELVKKFEAAMDDDFNTADAISAIFEMVKLSNSTISEESSRAYLEELKGS 401 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI E + + IE +++ER K K F+ AD IR +L G +LED Sbjct: 402 IERLCEVLGI--ITEKKAEVLDDEIEAMIEERQQARKAKNFALADEIRGKLLDMGIVLED 459 Query: 445 YKNPDNGQRMTRWKQ 459 + +WK+ Sbjct: 460 TREG------VKWKR 468 >gi|187931126|ref|YP_001891110.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] gi|229558635|sp|B2SFH9|SYC_FRATM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187712035|gb|ACD30332.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] Length = 459 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 251/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNIT+IDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITNIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGNTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + A+ ND NT A+ L LA+E K + +LGI E Sbjct: 344 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 404 KQGDGADAS-EIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 449 >gi|242280816|ref|YP_002992945.1| cysteinyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] gi|259511828|sp|C6BS23|SYC_DESAD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|242123710|gb|ACS81406.1| cysteinyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] Length = 485 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 183/491 (37%), Positives = 255/491 (51%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF ++ + + +Y CG T YD HIG+AR +VFD+L R LR+ + Sbjct: 1 MRLYNTLNRKKEEFVPLNGNKVNLYACGITAYDLCHIGHARSSVVFDILVRYLRFKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TDIDDKII RA + + + + K +F D +L L +P+ Sbjct: 60 -VTFVRNFTDIDDKIINRANETGVTS------TELAEKFIGEFYVDMDKLNILRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP+MI L Q +I HAY + ++ F S +YG S R I++ + G R+ Sbjct: 113 CTEHIPEMIELTQTLIEKDHAYATPSGDVYFKVRSFDDYGKLSGRNIEDLQSGARIQPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWH+ECSAMS Y FDIHGGG DL FP Sbjct: 173 EKQDPLDFALWKAAKPGEPSWESPWGQGRPGWHLECSAMSEKYFELPFDIHGGGQDLSFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E A W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 233 HHENEIAQSEAATGKE-MARFWVHNGFVQINSEKMSKSLGNFFTIRDILD-------KFM 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGII 347 +R +L HYR P+DF+ + L EAE + SKW + + + ++ Sbjct: 285 PETLRYFLLTMHYRSPLDFSFEALEEAEKGIRRVYSALEQTAEALNKSKWSKAALPEEVL 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLA------------RESTKNHD----LLPIF 385 + A+ +D+NT A+ + L R+S D +L Sbjct: 345 AEIEDAEKGWADAMEDDMNTAGAMGHMFTLIRLAGRIGEEKSWRKSEGGRDAWIRILEDM 404 Query: 386 NASAHILGIEV--CKEHLN---------KNISIA-IEKLVQERLILLKMKKFSSADYIRK 433 +LGI KE L K I +A +E+LV R K K F+ +D IR Sbjct: 405 KKWGEVLGIFTRDPKEFLEELKLCMLERKGIEVAKVEELVAARQEARKNKDFARSDEIRD 464 Query: 434 QLESKGFILED 444 +L G ++D Sbjct: 465 ELIELGVEVKD 475 >gi|281492464|ref|YP_003354444.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] gi|281376128|gb|ADA65619.1| Cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] Length = 448 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 254/462 (54%), Gaps = 40/462 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A E N + ++ + F +DT L + P+ Sbjct: 60 -VQYISNFTDVDDKIIKAAANE------NISTKELSERYIAAFYEDTDALNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I MI IQ ++ AY + ++ F S +Y + + + + G R E+ Sbjct: 113 ATEFIEAMIEFIQELVDKEFAYVSQGDVYFRVSKSKDYAKLANKNLADLLAGASGRTDEE 172 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK + E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TKLKESPADFALWKSAKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A ++ N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQS-EAKTGQRFVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVVN----- 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGIIDPAVLSALYND 358 ++R + THYR P++FT LTEAE + K + + + L+ ND Sbjct: 287 --PQILRFFLATTHYRRPVNFTDDALTEAENNIKKIENAYRHLDEQAESNLSALTTFRND 344 Query: 359 LNTVSAIQALHKLARESTKNHDLLP-------------IFNASAHILGIEVCKEHLNKNI 405 V+A+ +A T +D + F+ ILGI K +++ Sbjct: 345 F--VAAMDEDFNIANGMTVFYDFVSWVNKGNGGPEVKEFFDQVLEILGI---KFKFEQSL 399 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE +++ R + +++ F+ +D IR L+++G +LED K+ Sbjct: 400 DSEIEAMIEARQLAREVRDFAKSDEIRDALKAQGIVLEDTKD 441 >gi|295108532|emb|CBL22485.1| cysteinyl-tRNA synthetase [Ruminococcus obeum A2-162] Length = 469 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 182/477 (38%), Positives = 251/477 (52%), Gaps = 51/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF ++ +RMYVCGPTVY+ HIGNARPMI+FD + R L Y E Sbjct: 1 MKLFNTMSRRKEEFVPLEEGKVRMYVCGPTVYNLIHIGNARPMIIFDTVRRYLEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGVSS------EEISQRYIAECKKDMAGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ +I G+AY A+ + F YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIDMIQTLIDKGYAYPVADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLQVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPFWKSPWCDGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS C + + A W+HN FLN++ RKMSKS GNF T+ ++ G Sbjct: 233 VFPHHENEIAQSECCNGV-PFAKYWMHNAFLNIDNRKMSKSLGNFRTVRQI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEI-LLSKWPQTSTSKGIIDP 349 + V+R ML HYR P++F+ ++R+T+A L + S + D Sbjct: 285 QYDLQVLRFFMLNAHYRSPLNFSADLMESSKNALERITDAAARLRDRQAAASVQEASEDE 344 Query: 350 AVL------------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI--- 394 + A+ +D NT A+ A+ +L + N +AH L + Sbjct: 345 KKMMQEEAAFVTKFEEAMDDDFNTADALAAVFELVKFGNTNVQEGSSAEFAAHTLEVMTK 404 Query: 395 --EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +V L+K I IE L+ ER K K F+ AD IR L KG L+D + Sbjct: 405 LCDVLGLILDKKEEILDEEIENLIAERQAARKAKDFARADEIRGLLLDKGIELKDTR 461 >gi|169830058|ref|YP_001700216.1| cysteinyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] gi|226735062|sp|B1HNM3|SYC_LYSSC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|168994546|gb|ACA42086.1| Cysteinyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] Length = 466 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 261/488 (53%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R +Y + Sbjct: 3 IQIFNSLSRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYFQYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII+ A + + + + +T + + +D T L C PR Sbjct: 62 -VKFVSNFTDVDDKIIKAANE------LGEEVHELTERFIAAYFEDVTALGCKKADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +I IQ +I G+AYE+ ++ + T YG S + +D+ K+G R+ Sbjct: 115 VTEHMADIIQFIQVLIEKGYAYESAGDVYYRTRKFNGYGKLSHQSVDDLKIGARIEAGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K + DF LWK + P E WESPWG GRPGWHIECS M+ +LG DIH GG DL FPH Sbjct: 175 KDDALDFALWKAAKPGEIFWESPWGNGRPGWHIECSVMAREHLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS + +KT A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 235 HENEIAQSEAHN--DKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------KQID 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 V+R ML HYR PI+F ++R+ A + T+ S G L+ Sbjct: 286 PQVLRFFMLSVHYRHPINFAKDLVEAASAGLERIRTAYNNVKHRLTTTVSLGDHSDEWLN 345 Query: 354 -----------ALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNASAHI 391 A+ +D NT + I L +LAR E+ +L F + Sbjct: 346 KITEQKAQFEEAMDDDFNTANGISVLFELARIANIYLNETNTCKKVLETFIETFEVLGDV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGIE K + + IE L+QER+ K + F+ +D IR L+++G ILED + Sbjct: 406 LGIEFAK--EEELLDEEIEALLQERVEARKNRDFARSDEIRDHLQAQGIILEDTRQG--- 460 Query: 452 QRMTRWKQ 459 TRWK+ Sbjct: 461 ---TRWKR 465 >gi|325689003|gb|EGD31011.1| cysteine--tRNA ligase [Streptococcus sanguinis SK115] Length = 447 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 173/468 (36%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PKE-----VADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I ++ ++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSRDYAKLANKTLADLELGASGRTNEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D L A + Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSNQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 D N + I + +LA+ + F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|309389952|gb|ADO77832.1| cysteinyl-tRNA synthetase [Halanaerobium praevalens DSM 2228] Length = 483 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 256/482 (53%), Gaps = 67/482 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL + EF+ ++ ++MYVCG TV +++HIG+ R +I +DV+ R L Y + Sbjct: 2 IKVYNTLTGEKEEFKPVEKDKVKMYVCGLTVQNYSHIGHIRSVINYDVIRRFLEYLGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TDI++KI++RA +E P + + +K F++D R Sbjct: 61 -VDYISNFTDINEKIVQRAAEEDLK-P-----AALANKYANAFLEDLREFNVKPADKYLR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ ++I ++ +I G+AYE N + F S +YG S R +DE + G R+ Sbjct: 114 VSENVAEIIEMVTTLIEKGYAYEVNGNVYFSVESFADYGKLSGRNLDEMQAGARIAVNKE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK+ E GW+SPWG G PGWHIECSAMS LG FDIHGGG+DLIFPH Sbjct: 174 KRNPLDFGLWKK-VESETGWDSPWGEGWPGWHIECSAMSMKRLGSTFDIHGGGVDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS +K N W+HNG +NL G KMSKS GNF T E+L + + A Sbjct: 233 HENEIAQSEAYSD-QKFVNYWLHNGTVNLSGEKMSKSQGNFFTSREVL-------KEFSA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGIID--- 348 V+R +L HYR PIDF+ ++L EA L++ T S ++ I+ Sbjct: 285 EVVRYFLLTRHYRSPIDFSYEKLEEAATSLTRIKNTRKQLAKVLSLDINSAAENKIEQEF 344 Query: 349 --------PAVLSALYNDLNTVSAIQALHKLARE------------STKNHDLLP----I 384 ++AL +D NT AI +H LA E + KN LL I Sbjct: 345 FENIISKKKEFIAALKDDFNTAEAIGVIHDLAGEINSYINRKEFDLNEKNFALLTKTEKI 404 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM-------KKFSSADYIRKQLES 437 F ILG+E E +++ S + LV +L+K+ K + AD IR QLE Sbjct: 405 FLELIEILGLEFKLESASESESELVSPLVN---LLIKLRNKARENKNWQEADLIRDQLEE 461 Query: 438 KG 439 G Sbjct: 462 IG 463 >gi|319939876|ref|ZP_08014231.1| cysteinyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] gi|319810887|gb|EFW07206.1| cysteinyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] Length = 447 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 172/460 (37%), Positives = 248/460 (53%), Gaps = 38/460 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLRKFVPLEEGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PKE-----VADKYIAAFREDVTTLGVQPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ +I +Q ++ G AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVDYMMDIIDFVQVLVDKGFAYESEGDVYFRVEKSSNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TTRKENPVDFALWKAAKPGEIFWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN- 357 V+R HYR+PI+FT + + +AE+ L T G +D L A + Sbjct: 288 ---GQVLRFFFATQHYRKPINFTEKAVHDAEVNLKYLKNTYEQPFTGTVDLTELQAFLDK 344 Query: 358 -------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISI 407 D N + I + ++A+ H + A A +L GI E L+ + Sbjct: 345 FTAAMDEDFNAANGITVVFEMAKWINSGHYSQEVKTAFAELLQVFGIVFTAEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE L+++R K F++AD IR +L +KG L D K+ Sbjct: 402 -IEALIEQRQAARVAKDFATADKIRDELAAKGIKLLDTKD 440 >gi|239618081|ref|YP_002941403.1| cysteinyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506912|gb|ACR80399.1| cysteinyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] Length = 458 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 187/465 (40%), Positives = 251/465 (53%), Gaps = 42/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I NTL K EF I P +R+YVCGPTVY+F H+GN+RP I FD R L Y G + Sbjct: 2 LRITNTLTGKKEEFIPITPGEVRIYVCGPTVYNFVHLGNSRPAITFDAFRRYLEYR-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +N TDIDDKII +A +E DA+ I + Q+ KD+ L PR Sbjct: 61 VIL-AQNFTDIDDKIIIKANEEGV-----DALEI-AERYIVQYWKDSLALGIRPANFHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++I IQ++I G AY + ++ F+ S NYG S RK+++ G R+ Sbjct: 114 TTHFVDEIIEFIQDLIDKGFAYVVDGDVYFNVSEFKNYGELSHRKLEDMIAGARIEPGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + EP W SPWG GRPGWHIECS MS+ LG+ FDIH GG DLIFPH Sbjct: 174 KKSPEDFALWKAAKEGEPFWNSPWGPGRPGWHIECSVMSTCILGETFDIHAGGADLIFPH 233 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE AQS R KT A W+HNG + L G KMSKS GNFITI + + KK+G Sbjct: 234 HENEKAQSEA--RHGKTFARYWMHNGMMRLAGSKMSKSLGNFITIKDAV--KKYG----- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTE-------AEILLSKWPQTSTSKGIID---PAV-- 351 IRL + HYR PID++ + L E +L + ++ K + P V Sbjct: 285 KDAIRLFIFSKHYRSPIDYSEEMLAENLRAVKRVNAILRDFEKSEGDKPLFSKKTPFVKE 344 Query: 352 -----LSALYNDLNTVSAIQALHKLARE--STKNHDL-LPIF----NASAHILGIEVCKE 399 + AL +D NT A+ + L + TKN + L I+ N +LGI E Sbjct: 345 QIERFIEALDDDFNTPKAVALMFDLINKMGETKNRNRKLEIYHLIRNEFGPVLGILEKDE 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ NI ++ L++ R K K + AD IR +L G L D Sbjct: 405 EVSANIDGLVKLLIEIRAEFKKDKNYEKADQIRDRLNELGIKLMD 449 >gi|170760749|ref|YP_001788843.1| cysteinyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree] gi|229558627|sp|B1KTA5|SYC_CLOBM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169407738|gb|ACA56149.1| cysteine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree] Length = 465 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 264/488 (54%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFVTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G+R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGSRINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKNQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDDLKERGIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 458 -QGVRWKQ 464 >gi|16802285|ref|NP_463770.1| cysteinyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|224498915|ref|ZP_03667264.1| cysteinyl-tRNA synthetase [Listeria monocytogenes Finland 1988] gi|224502466|ref|ZP_03670773.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL R2-561] gi|254828699|ref|ZP_05233386.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] gi|255028571|ref|ZP_05300522.1| cysteinyl-tRNA synthetase [Listeria monocytogenes LO28] gi|21264004|sp|Q8YAB1|SYC_LISMO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|16409604|emb|CAD00766.1| cysteinyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|258601104|gb|EEW14429.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] Length = 471 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 253/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI------- 346 VIR ML HYR+PI L +A+ L + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|289168428|ref|YP_003446697.1| cysteinyl-tRNA synthetase [Streptococcus mitis B6] gi|288907995|emb|CBJ22835.1| cysteinyl-tRNA synthetase [Streptococcus mitis B6] Length = 447 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 179/470 (38%), Positives = 255/470 (54%), Gaps = 43/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++ +I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEELIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKLGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 -LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDAQELQAFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHIL---GIEVCKEHLNKNIS 406 +A+ D N + I + ++A+ ++ N+D + A A +L GI +E L+ + Sbjct: 345 FVAAMDEDFNAANGITVVFEMAKWINSGNYD-ASVKQALADMLEVFGIVFVEEVLDAD-- 401 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 --IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|282882291|ref|ZP_06290922.1| cysteine--tRNA ligase [Peptoniphilus lacrimalis 315-B] gi|281297841|gb|EFA90306.1| cysteine--tRNA ligase [Peptoniphilus lacrimalis 315-B] Length = 467 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 179/475 (37%), Positives = 249/475 (52%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L K EF I+ + MY CGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLFNSLTGKKEEFYPINSGKVTMYNCGPTVYNYIHVGNARPIVVFDTLRRY--FLYKGL 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDKII RA +E N I K ++F KD + L T P Sbjct: 59 DVKFVLNFTDIDDKIINRANEE------NKTTEQIAEKYIEEFKKDASALGLYDYQTINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+ + QMI IQ +I G AY ++ ++ FD + YG S +KI++ + G+RV Sbjct: 113 RATHVVDQMISFIQTLIDKGAAYVSSGDVYFDVNYDKEYGKLSGKKIEDLRAGSRVDVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK EP W++PWG GRPGWHIECS M+ LG DIH GG DL FP Sbjct: 173 LKRNPYDFALWKNKKENEPYWKAPWGEGRPGWHIECSVMAKTLLGDTIDIHTGGEDLKFP 232 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQS C D A W+HNG + + KMSKS GNF T+ E+ + + Sbjct: 233 HHENEIAQSETCND--APFARFWLHNGMITVNNEKMSKSKGNFFTVREV-------SKEY 283 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDP--- 349 ++R +L T YR PI+F+ ++RL A+ L K + S + + + Sbjct: 284 DLEILRFFLLTTSYRAPINFSREVMNQTKNALERLYNAKYKLEKDIELSKERDLTEDEKK 343 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASA 389 + A+ +DLNT AI A+ L ++ N D + + Sbjct: 344 IEEKFQAHRQSFEKAMEDDLNTADAITAIFDLVKDINVNLDENSAKKLLEEGMSLLKTLT 403 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ILGI + +E ++ I L++ER K K F AD IR +L KG ++D Sbjct: 404 KILGI-MEREKNCDDLDEEILNLIKEREDARKNKDFKRADEIRDELLEKGIEIKD 457 >gi|208780370|ref|ZP_03247711.1| cysteinyl-tRNA synthetase [Francisella novicida FTG] gi|208743738|gb|EDZ90041.1| cysteinyl-tRNA synthetase [Francisella novicida FTG] Length = 464 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 176/466 (37%), Positives = 249/466 (53%), Gaps = 47/466 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFNYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWNSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 348 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEVC--KEHL 401 + A+ ND NT A+ L LA+E K + +LGI +E+ Sbjct: 349 IKAMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 408 Query: 402 NKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 409 KQGDGVDASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 454 >gi|294496962|ref|YP_003560662.1| cysteinyl-tRNA synthetase [Bacillus megaterium QM B1551] gi|294346899|gb|ADE67228.1| cysteinyl-tRNA synthetase [Bacillus megaterium QM B1551] Length = 465 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 255/487 (52%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL R+ F ++ + ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IKLYNTLTRQKETFVPLEENKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A++ +P I ++ + +DT+ L C PR Sbjct: 62 -VEYVSNFTDVDDKLIKAAKELGEDVPT------IANRFIDAYFEDTSALGCKHADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I ++ G+AYE+ ++ + T YG S + IDE + G R+ Sbjct: 115 VTENMDIIIEFIDELVKKGYAYESEGDVYYRTRKFEGYGKLSHQSIDELQSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDPLDFTLWKATKDGEIAWDSPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KSFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFT---------------------VQRLTEAEILLSKWPQTSTS 343 ++R +L HYR PI++ RL A L + Sbjct: 287 SLLRFFILSVHYRHPINYNEEILENTRKGFERLQTAYGNLTHRLEAATNLQEDASEWFEK 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI----FNASAHIL 392 + + + +D NT +AI L +LA+ E T + D++ F + Sbjct: 347 LKELRETFVEEMDDDFNTANAISVLFELAKQANLYLLEQTTSTDVIEAFIKEFKELGAAI 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI + L + I++L+Q R+ K + F AD IR +L++K ILED Sbjct: 407 GITFGEAEL---LDEEIDQLIQGRIQARKDRNFQLADQIRDELKAKNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|160903262|ref|YP_001568843.1| cysteinyl-tRNA synthetase [Petrotoga mobilis SJ95] gi|187629839|sp|A9BGT9|SYC_PETMO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160360906|gb|ABX32520.1| cysteinyl-tRNA synthetase [Petrotoga mobilis SJ95] Length = 469 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 262/471 (55%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+TL ++ + + I++Y+CGPTVY+ HIGNARP+I+FD R L Y G K Sbjct: 7 IKIYDTLSGQVVDLVPVKEGEIKIYLCGPTVYNLLHIGNARPIIIFDAFRRFLEYI-GYK 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT V+N TDIDDKIIE+A++E+ +P + + + ++ +D T L A P+ Sbjct: 66 -VTLVQNFTDIDDKIIEQAKKEN--LPFEE----VGKRYIIEYWRDMTALKARAFNFHPK 118 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 TN++ ++I I+ + G+AY+A N ++ F+ YG S RK+++ K+G RV Sbjct: 119 TTNYVDEIISYIKELEEKGYAYKAENGDVYFEVEKFSRYGELSHRKVEDLKVGVRVEVSE 178 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF LWK S EP WESPWG+GRPGWHIECS MSS LG FDIH GG DLIFP Sbjct: 179 YKKNPLDFALWKASKEGEPFWESPWGKGRPGWHIECSVMSSEILGDTFDIHAGGNDLIFP 238 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ A + A W+HNG + + KMSKS GN + +LL KKF Sbjct: 239 HHENERAQA-IAKSGKDFAKYWMHNGMIRMAQDKMSKSLGNVWYLRDLL--KKFD----- 290 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------------WPQTSTSKGI 346 + V+++ +L HYR PID + + L E+ +++ PQ Sbjct: 291 SDVLKIFILSKHYRIPIDVSEELLRNQEVSVNRVKESLNEAETFFNGKVPCPQKMNYFKE 350 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLAR----------ESTKNHDLLPIFNASAHILGIEV 396 + ++S+L ND +T S + + +L+R E T ++ I N +LG+ Sbjct: 351 QEEYLISSLSNDFDTPSVVARIFELSRDLNKALNSRDEETIKNNYYIIRNIYGSVLGVFE 410 Query: 397 CKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + KN ++ +E ++ R L + K ++ +DYIR L G ++D Sbjct: 411 TNEQIQKNNVELNQLMEIILNVRSALREEKLYNLSDYIRDNLSKIGIEIKD 461 >gi|15673833|ref|NP_268008.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|24418700|sp|Q9CEJ0|SYC_LACLA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|12724882|gb|AAK05949.1|AE006415_4 cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|326407342|gb|ADZ64413.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56] Length = 448 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 252/462 (54%), Gaps = 40/462 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A+ N + + + F +DT L + P+ Sbjct: 60 -VQYISNFTDVDDKIINGAK------AANMTTTDFSERYIAAFYEDTDALNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I MI IQ ++ AY + ++ F S +Y + + + + G R E+ Sbjct: 113 ATEFIEAMIEFIQELVDKEFAYVSQGDVYFRVSKSKDYAKLANKNLADLLAGASGRTDEE 172 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK + E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TKLKESPADFALWKSAKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A +K N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQS-EAKTGQKFVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVVN----- 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGIIDPAVLSALYND 358 ++R + THYR P++FT LTEAE + K + + + L+ ND Sbjct: 287 --PQILRFFLATTHYRRPVNFTDDALTEAENNIKKIENAYRHLDEQAESNLSALTTFRND 344 Query: 359 LNTVSAIQALHKLARESTKNHDLLP-------------IFNASAHILGIEVCKEHLNKNI 405 V+A+ +A T +D + F+ ILGI K +++ Sbjct: 345 F--VAAMDEDFNIANGMTVFYDFVSWVNKGNGGPEVKEFFDQVLEILGI---KFKFEQSL 399 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE +++ R + +++ F+ +D IR L+++G +LED K+ Sbjct: 400 DSEIEAMIEARQLAREVRDFAKSDEIRDALKAQGIVLEDTKD 441 >gi|21222630|ref|NP_628409.1| cysteinyl-tRNA synthetase [Streptomyces coelicolor A3(2)] gi|30316185|sp|Q9L0Q6|SYC_STRCO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|7242756|emb|CAB77329.1| putative cysteinyl-tRNA synthetase [Streptomyces coelicolor A3(2)] Length = 613 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 166/470 (35%), Positives = 250/470 (53%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 150 IRLYDTSARQIRDFAPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 208 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKII +A ++ N I +N + F L CL PT++PR Sbjct: 209 -VTFVRNVTDIDDKIIRKAAEQ------NRPWWSIGYENERAFNDAYAALGCLPPTYEPR 261 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +M+ +++ +I GHAYEA+ + FD S+P Y S S + +DE + + E Sbjct: 262 ATGHITEMVEMMRGLIERGHAYEADGNVYFDVRSLPGYLSLSNQDLDELRQPSEDGET-G 320 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGG+DLIFPH Sbjct: 321 KRDLRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGEEFDIHGGGIDLIFPH 380 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + WP Sbjct: 381 HENEIAQAKGFG--DAFARYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KKWPP 431 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTS--------KGIIDPAVLS 353 V+R + HYR I+++ + L EAE + + Q T + PA Sbjct: 432 VVLRYYLGTPHYRSTIEYSEESLREAESAYGRIEGFVQRVTELAGHAVEPAAEVPPAFAE 491 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-------------------DLLPIFNASAHILGI 394 A+ +DL A+ +H R+ +L + A G Sbjct: 492 AMDDDLGVPQALAIVHTTVRQGNSALAADDKDAAVARLAEVRAMLGVLGLDPLDAQWAGA 551 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + E L + + ++ +R K +++AD IR QL G ++ED Sbjct: 552 QAQGEDLRHVVDSLVRLVLDQREGARARKDWATADAIRDQLGQSGLVIED 601 >gi|328676393|gb|AEB27263.1| Cysteinyl-tRNA synthetase [Francisella cf. novicida Fx1] Length = 459 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 249/467 (53%), Gaps = 49/467 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + S + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANENGEST------TELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKKGEPAWNSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDPAV 351 V+R + T YR I+++ + L A+ + + P ++ + Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASE---YEEKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI------EVC 397 + + ND NT A+ L LA+E K + +LGI E Sbjct: 344 IKVMDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYF 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + S IEKL+ ER K K ++ AD IR QL+ +G ILED Sbjct: 404 KQGDGADAS-EIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILED 449 >gi|327460677|gb|EGF07012.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1] gi|327488752|gb|EGF20551.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1058] Length = 447 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 175/468 (37%), Positives = 251/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PKE-----VADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I ++ ++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHDYAKLANKTLADLELGASGRTNEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D L A + Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSNQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|284800534|ref|YP_003412399.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284993720|ref|YP_003415488.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5923] gi|284056096|gb|ADB67037.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284059187|gb|ADB70126.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5923] Length = 471 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 253/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI------- 346 VIR ML HYR+PI L +A+ L + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQSDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|288550004|ref|ZP_05968971.2| cysteine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] gi|288316405|gb|EFC55343.1| cysteine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] Length = 465 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 180/483 (37%), Positives = 263/483 (54%), Gaps = 50/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Y Sbjct: 6 LKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRFLGYNL 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K YVRNITDIDDKII+RA + ++ + + + D L P +P Sbjct: 66 K---YVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHNDFDALNIQRPDSEP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT+HI ++I + + +I GHAY A+N +++F + P YG SR+ +++ + G RV Sbjct: 117 RATHHIHEIIDITEKLIERGHAYVADNGDVMFSVPTDPTYGQLSRQDLEQLQAGARVDVV 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LGK FDIHGGG DL+F Sbjct: 177 DVKRNPMDFVLWKMSKAGEPSWPSPWGEGRPGWHIECSAMNCKQLGKHFDIHGGGSDLMF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 237 PHHENEIAQSTCAHGGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYY 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGI-------IDPAVLS 353 A +R ++ HYR ++++ + L +A L + T K + + + Sbjct: 289 DAETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVPAAGGEAFEARFVE 348 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAH------ILGI--------EVC 397 + +D NT A L +ARE K+ D+ ++H +LG+ Sbjct: 349 VMNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANALASHLRKLSSVLGLLEQEPDAFLQS 408 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++ IE+L++ RL + K +++AD R +L G ILED G + T W Sbjct: 409 GAQADEGEVAEIEQLIKARLEARQAKDWAAADAARNRLTEMGIILED------GPQGTTW 462 Query: 458 KQK 460 ++K Sbjct: 463 RRK 465 >gi|116871622|ref|YP_848403.1| cysteinyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460673|sp|A0AF38|SYC_LISW6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116740500|emb|CAK19620.1| cysteinyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 471 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 252/476 (52%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLTREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPDEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|148657145|ref|YP_001277350.1| cysteinyl-tRNA synthetase [Roseiflexus sp. RS-1] gi|148569255|gb|ABQ91400.1| cysteinyl-tRNA synthetase [Roseiflexus sp. RS-1] Length = 478 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 256/491 (52%), Gaps = 59/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R + F+ ++P ++MYVCG TVYD AHIG+A IVFDV+ R L Y Sbjct: 3 IRIYNTLTRTLEPFETLEPGVVKMYVCGVTVYDRAHIGHAMSAIVFDVVRRYLEYR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII RAR+ I + +F++D L PR Sbjct: 61 AVQHVVNFTDVDDKIINRARE------IGRDPKELAESYIAEFLEDLEALNVKRAHIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++ I +I GHAY + ++ F +++P+YG SRR +D+ G R+ Sbjct: 115 ATETMPEIQQFITRLIETGHAYVVDGDVYFRIATVPDYGKLSRRSLDDMIAGNRISVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAM+ +LG+ DIHGGG DLIFPH Sbjct: 175 KENPADFALWKAAKPGEPFWDSPWGPGRPGWHIECSAMNLAHLGEQIDIHGGGADLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGR---------KMSKSNGNFITINELLETK 295 HENEIAQ+ + A W+HNG L ++ R KMSKS GN +TI E L Sbjct: 235 HENEIAQTESLTG-KPFARYWMHNGMLQIQTRLADGTYKLEKMSKSLGNVVTIREFLA-- 291 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDP 349 + V+RL +L + YR P+ F + + E L + P + G+ Sbjct: 292 -----QYHPDVLRLTVLSSSYRSPLAFGEEIAADQERKLVRLRSALEPPIGTIEAGLAVD 346 Query: 350 AVL-----------SALYNDLNTVSAIQALHKLARESTKNHDL----LPIFNASA----- 389 +L +A+ +D NT A+ AL L R D P A A Sbjct: 347 VLLAAARTTRERFIAAMDDDFNTAGALAALFDLVRAINTARDAGVGGAPFAEAQATFREL 406 Query: 390 -HILGIEVCKEH-LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG+ + + + + + I+ L++ R L K K+F+ AD +R +L G LED Sbjct: 407 TDVLGLTLTPQQPIIQQAAPFIDLLIEVRSELRKAKQFALADMVRNRLADLGITLED--T 464 Query: 448 PDNGQRMTRWK 458 P TRWK Sbjct: 465 PQG----TRWK 471 >gi|195978850|ref|YP_002124094.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229558791|sp|B4U570|SYC_STREM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|195975555|gb|ACG63081.1| cysteinyl-tRNA synthetase CysS [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 448 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 172/460 (37%), Positives = 243/460 (52%), Gaps = 38/460 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 3 IKIYDTMTRSLREFVPITDKVVNMYVCGPTVYNYIHIGNARSAVAFDTVRRYFEY--AGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ S P A I + F++DT L T PR Sbjct: 61 TVNYISNFTDVDDKIIKAAKEAGLS-PKQLADQFIAA-----FMEDTKALGVKPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I I +I G+AYE+ ++ F + NY + + I + + G E Sbjct: 115 VMDYMDEIIAFIAALIKKGYAYESAGDVYFRVAKASNYARLANKTIADLEAGASGRTDTE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W SPW GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 TALKENPLDFALWKSAKPGEVSWTSPWSAGRPGWHIECSVMATELLGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 235 FPHHTNEIAQSEA--KTSKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTVD---- 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPA 350 +R + HYR+PI+FT + + +AE+ L T S+ A Sbjct: 289 ---GQTLRFFLATQHYRKPINFTEKAIHDAEVNLKYLKNTLQQPTVATADSSQLAAFVTA 345 Query: 351 VLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I L +A+ + + F + GI E L+ Sbjct: 346 FKAAMNDDFNTANGITVLFDMAKWINSGAYSEAVKSAFEEMLAVFGIVFEAESLDTE--- 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE+L+ ER + F+ AD IR QL ++G L D K+ Sbjct: 403 -IEQLIAERQEARANRDFAKADAIRDQLAAQGIKLLDTKD 441 >gi|124267642|ref|YP_001021646.1| cysteinyl-tRNA synthetase [Methylibium petroleiphilum PM1] gi|124260417|gb|ABM95411.1| cysteinyl-tRNA synthetase [Methylibium petroleiphilum PM1] Length = 474 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 259/467 (55%), Gaps = 43/467 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++I+NTL R F I+P ++RMYVCG T+YD H+G+AR M+ FDV+ R LR G Sbjct: 15 SLRIHNTLTRSTEAFSPIEPGHVRMYVCGMTIYDLCHVGHARMMMAFDVVQRWLRVS-GL 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRNITDIDDKII+RA + IPI +T + T +D L PTH+P Sbjct: 74 R-VTYVRNITDIDDKIIKRALER--GIPIRQ----LTDEMTAAMHQDIGALGIEPPTHEP 126 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT ++ M+ LI+ + +G AY ++ + P YG S + ID + G RV Sbjct: 127 RATEYVGAMVGLIEVLERNGLAYRVPGGDVNYSVRKFPGYGRLSGKSIDALRAGERVAVL 186 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K +P DF+LWK + P EP +++P+G GRPGWHIECSAMS LG+ FDIHGGG+D Sbjct: 187 EGKDDPLDFVLWKAAKPEEPADAKYDAPFGPGRPGWHIECSAMSHALLGERFDIHGGGMD 246 Query: 240 LIFPHHENEIAQSCCADRIEKT---ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 L FPHHENEIAQS A + N+W+HNGFLN++ KMSKS GNF TI ++L K+ Sbjct: 247 LQFPHHENEIAQSDGAFHLGSGHSFVNVWMHNGFLNVDNEKMSKSLGNFFTIRDIL--KR 304 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL---- 352 + G + IR ML HYR P +F+ L +A L + T+ + PA + Sbjct: 305 YDGET-----IRFFMLRVHYRSPFNFSDAGLDDARSGLRRL-YTALEGTAVAPAEIDWTD 358 Query: 353 -------SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVCKEH 400 +A+ +D NT A+ L LA E S ++ LL + +L E ++ Sbjct: 359 PHAARFKAAMDDDFNTPIAVSVLFDLAGEVNRSRSAQSAGLLRSLAGTLGLLQQEAA-QY 417 Query: 401 LNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + IE + R + F+ +D IR L ++G +L+D Sbjct: 418 LQGGSGVDTGHIEAQIAARAAAKAARDFAESDRIRDALAAQGIVLKD 464 >gi|15606347|ref|NP_213726.1| cysteinyl-tRNA synthetase [Aquifex aeolicus VF5] gi|6831683|sp|O67163|SYC_AQUAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|2983551|gb|AAC07125.1| cysteinyl-tRNA synthetase [Aquifex aeolicus VF5] Length = 495 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 184/512 (35%), Positives = 263/512 (51%), Gaps = 78/512 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL K+ EF I+P + +Y CG TVYD +H+G+ R +IVFDV R L + + Sbjct: 3 LRIYNTLSGKVEEFVPINPPKVLIYTCGVTVYDDSHVGHGRSLIVFDVFRRFLEHLGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA+QE D ++I + ++ D + +PR Sbjct: 62 -VKFVRNFTDVDDKIINRAKQE-----CTDFMTI-ADRYIARYYVDMENIRVRPADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I +IQ ++ G+AY ++ F +YG S+R I+E G RV Sbjct: 115 VTEHIPEIIEVIQKLVEKGYAYVVEGDVYFSVKKFKDYGKLSKRDIEELIAGARVEPSEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL+FPH Sbjct: 175 KRDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECVAMVFKHLGETIDIHGGGLDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG + + G+KMSKS GN++T+ E+ + Sbjct: 235 HENEIAQA-EAITGKPFARYWMHNGLVTVGGQKMSKSLGNYVTLREVY-------TKYHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI-------------LLSKWPQTSTSKGIIDPA- 350 V+RL +L THYR P+DF+ +++ E LL K + +G P Sbjct: 287 DVLRLLVLFTHYRSPLDFSWEKMEETLKAYERLKNAIEDLELLKKLQVVESKEGGTHPLY 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTK------------NHDLLP------ 383 ++L +D NT A+ ++KL E K + +L Sbjct: 347 EQVKEFEENFYASLSDDFNTPEALSHVYKLVGELNKVKNKAYSEGKITDRELSAYEFASK 406 Query: 384 -IFNASAHILG----------IEVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSA 428 + N I G +E E + + EKL+Q R I K K F A Sbjct: 407 SLLNTMKKIFGLLEDLYPECKVERVVERELEAGQVFDEKLIQILIEARNIARKEKVFKVA 466 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 DYIR +L+ G +LED P T+WK++ Sbjct: 467 DYIRDKLKELGIVLED--TPAG----TKWKKR 492 >gi|172054928|ref|YP_001806255.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] gi|171701209|gb|ACB54189.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] Length = 486 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 185/493 (37%), Positives = 268/493 (54%), Gaps = 68/493 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+ R++ F + P + MY CG TVYD+ H+G+AR I++D++ R L+++ E Sbjct: 7 LKIYNSQTRRLEPFVTLLPGRVTMYCCGVTVYDYCHLGHARSYIIWDMVRRYLQWWGYE- 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDIDDKI+ RA+QE S+ + I+ + + + D L + PR Sbjct: 66 -VTYVQNFTDIDDKILRRAQQEGVSM------ADISQRFIEAYFTDIRPLNVMDADQYPR 118 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-- 180 T++I + LIQ ++ +AY + ++ F + YG S R + G RV Sbjct: 119 VTDNISGIQQLIQVLLDKNYAYAVDGDVYFHVEAFGEYGKLSGRSQSMMQAGASGRVAVN 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 EK KK+P+DF LWK + P EP W SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 179 DLEKTKKKHPSDFALWKSAKPEEPAWHSPWGEGRPGWHIECSAMVRALLGETIDIHGGGG 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A+ + A W+HNG + + G KMSKS GNF TI ELL Sbjct: 239 DLVFPHHENEIAQSEAANG-KPLAKYWLHNGMVTVNGEKMSKSLGNFTTIRELLN----- 292 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------ 346 R VIRL +L HYR+P+DFT + ++ A + W + +G+ Sbjct: 293 -RPLDPMVIRLFVLQAHYRKPLDFTEEAISSA---TNGW--QTLQQGLRFGEKYEDRLGW 346 Query: 347 -----IDPAVL----SALYNDLNTVSAIQALHKLARESTKNHDLL------PIFNAS--- 388 +D AV+ +A+ +D N+ + L +LA+ + +LL P + + Sbjct: 347 QKNQELDSAVIEQFKAAMDDDFNSPGGLAVLFELAKNLRREGNLLTHEGKNPTDSDNLQR 406 Query: 389 --------AHILGIEVCKE---HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLE 436 A ILG+E E N+N A I KL+Q+R K+K ++ +D +R+QL+ Sbjct: 407 QWQTLVHLAGILGLEAKSEANLEDNQNFDEAEITKLIQQRNEARKVKDYAQSDRLREQLQ 466 Query: 437 SKGFILEDYKNPD 449 KG L D+ N + Sbjct: 467 EKGITLIDHPNGE 479 >gi|168178810|ref|ZP_02613474.1| cysteinyl-tRNA synthetase [Clostridium botulinum NCTC 2916] gi|182669931|gb|EDT81907.1| cysteinyl-tRNA synthetase [Clostridium botulinum NCTC 2916] Length = 465 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 261/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTVKE------LGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED------T 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 TQGVRWKQ 464 >gi|170754736|ref|YP_001783143.1| cysteinyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] gi|229558626|sp|B1IGH6|SYC_CLOBK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169119948|gb|ACA43784.1| cysteinyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] Length = 465 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 263/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 458 -QGVRWKQ 464 >gi|187631649|sp|A2SIM2|SYC_METPP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 185/467 (39%), Positives = 259/467 (55%), Gaps = 43/467 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++I+NTL R F I+P ++RMYVCG T+YD H+G+AR M+ FDV+ R LR G Sbjct: 2 SLRIHNTLTRSTEAFSPIEPGHVRMYVCGMTIYDLCHVGHARMMMAFDVVQRWLRVS-GL 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VTYVRNITDIDDKII+RA + IPI +T + T +D L PTH+P Sbjct: 61 R-VTYVRNITDIDDKIIKRALER--GIPIRQ----LTDEMTAAMHQDIGALGIEPPTHEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT ++ M+ LI+ + +G AY ++ + P YG S + ID + G RV Sbjct: 114 RATEYVGAMVGLIEVLERNGLAYRVPGGDVNYSVRKFPGYGRLSGKSIDALRAGERVAVL 173 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K +P DF+LWK + P EP +++P+G GRPGWHIECSAMS LG+ FDIHGGG+D Sbjct: 174 EGKDDPLDFVLWKAAKPEEPADAKYDAPFGPGRPGWHIECSAMSHALLGERFDIHGGGMD 233 Query: 240 LIFPHHENEIAQSCCADRIEKT---ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 L FPHHENEIAQS A + N+W+HNGFLN++ KMSKS GNF TI ++L K+ Sbjct: 234 LQFPHHENEIAQSDGAFHLGSGHSFVNVWMHNGFLNVDNEKMSKSLGNFFTIRDIL--KR 291 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL---- 352 + G + IR ML HYR P +F+ L +A L + T+ + PA + Sbjct: 292 YDGET-----IRFFMLRVHYRSPFNFSDAGLDDARSGLRRL-YTALEGTAVAPAEIDWTD 345 Query: 353 -------SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVCKEH 400 +A+ +D NT A+ L LA E S ++ LL + +L E ++ Sbjct: 346 PHAARFKAAMDDDFNTPIAVSVLFDLAGEVNRSRSAQSAGLLRSLAGTLGLLQQEAA-QY 404 Query: 401 LNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + IE + R + F+ +D IR L ++G +L+D Sbjct: 405 LQGGSGVDTGHIEAQIAARAAAKAARDFAESDRIRDALAAQGIVLKD 451 >gi|302552341|ref|ZP_07304683.1| cysteinyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736] gi|302469959|gb|EFL33052.1| cysteinyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736] Length = 477 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 253/471 (53%), Gaps = 52/471 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD+L R Y + Sbjct: 16 IRLYDTSARQIRDFTPLQPGCVSIYLCGATVQAAPHIGHIRSGLNFDILRRWFAYRGYD- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKII ++ + N I +N + F L CL PT++PR Sbjct: 75 -VTFVRNVTDIDDKIIAKSADQ------NRPWWAIGYENERAFNDGYDALGCLPPTYEPR 127 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK-- 182 AT HI +MI +++ +I GHAY A+ + FD S P Y + S + ID+ R P++ Sbjct: 128 ATGHITEMIEMMRGLIERGHAYVADGSVYFDVRSFPEYLALSNQDIDD----LRQPDEGV 183 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDL+F Sbjct: 184 SGKRDPRDFAMWKATKPGEPDWETPWGRGRPGWHLECSAMAHKYLGTAFDIHGGGLDLVF 243 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 244 PHHENEIAQAKAYG--DDFAQYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KRW 294 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK-GIIDP------AVL 352 V+R + HYR I+++ + L EAE ++ + Q K G+++P A Sbjct: 295 RPIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVVEKAGVVEPAPEVPLAFA 354 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH--- 400 A+ +DL A+ +H R+ L A +LG++ EH Sbjct: 355 EAMDDDLGVPQALAVVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDEHWAG 414 Query: 401 -------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R K + +AD IR QL G ++ED Sbjct: 415 ESDRGDDLHGVVDTLVRMVLDQREAARARKDWPTADAIRDQLSQSGLVIED 465 >gi|323483933|ref|ZP_08089308.1| hypothetical protein HMPREF9474_01057 [Clostridium symbiosum WAL-14163] gi|323693471|ref|ZP_08107680.1| cysteine-tRNA ligase [Clostridium symbiosum WAL-14673] gi|323402771|gb|EGA95094.1| hypothetical protein HMPREF9474_01057 [Clostridium symbiosum WAL-14163] gi|323502478|gb|EGB18331.1| cysteine-tRNA ligase [Clostridium symbiosum WAL-14673] Length = 468 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 179/477 (37%), Positives = 250/477 (52%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRTKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E DA I+ + ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGV-----DA-DTISKRYIEECKKDMAMMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +IQ++I GHAY + + F T S YG S + +++ + G R V Sbjct: 113 ATEEICGMLDMIQDLIDKGHAYTGKDGTVYFRTKSFKEYGKLSHKNLEDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG DIH GG DL Sbjct: 173 GEEDKEDPTDFVLWKPKKDGEPYWESPWCNGRPGWHIECSVMSKKYLGDSIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS ++ + A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 VFPHHENEIAQSEASNG-KTFAKYWMHNAFLNIDNRKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQ-----------------------RLTEAEILLSKW 337 + V+R ML HYR P++F+ + + E E+ S+ Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAELMEASKNGLERILTAVEKLNDALKAAEGELTESEK 344 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 +++K + +++ +D NT AI A+ +L + S L Sbjct: 345 ENITSAKEFVQK-FEASMDDDFNTADAISAVFELVKFSNTTASENSSKAYLSWLKETIEK 403 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LGI E + + IE ++ +R K K F+ AD IR +L G +LED Sbjct: 404 LCDVLGI--ITEKKEEILDSEIEDMIAQRQQARKDKNFALADEIRGKLLEMGIVLED 458 >gi|302390630|ref|YP_003826451.1| cysteinyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] gi|302201258|gb|ADL08828.1| cysteinyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] Length = 465 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 250/471 (53%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF ++ + + +Y CGPTVYDF H+GNAR I FDV+ L+Y E Sbjct: 1 MRIYNTLTRRKEEFIPLNGNKVTIYTCGPTVYDFFHVGNARVFITFDVIRNYLKYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA +E ++ + + +++ KD L PR Sbjct: 60 -VKFVQNFTDIDDKMIKRANEEGVTV------KELGDRFIKEYFKDADALNIKRADVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AYE ++ F P YG S + ++E + G RV Sbjct: 113 ATEHIEDIIEFIKVLIEKGYAYEVGGDVYFAARKFPGYGKLSGQNLEELEAGARVEPGEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP W SPWG GRPGWHIECSAM+ +LG+ DIHGGG DLIFPH Sbjct: 173 KKDPIDFALWKAKKPGEPSWPSPWGEGRPGWHIECSAMAMKHLGETIDIHGGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS A + A ++H G+LN+ KMSKS GNF T+ ++L + + Sbjct: 233 HENEVAQS-EAFTGKPFARFFMHVGYLNINNEKMSKSLGNFFTVRDIL-------KEYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R ML +HYR PI+F+ + L +++ L + + ++ A Sbjct: 285 EVLRFLMLSSHYRSPINFSRELLDQSKSALERLYNALYAMEHLENAAPERPLNGEEEEYL 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARES----TKNHDLLPIFNASAHILGIEVC 397 A+ +D NT AI L + RE +N + +L + Sbjct: 345 RRQLENKNKFKDAMDDDFNTAGAIAVLFDMIREFNVSLNENSSREAVKKTKEMVLELGGV 404 Query: 398 KEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +K + IE+ ++ER K K ++ AD IR +L ++G ILED Sbjct: 405 LGFFSKFEPVLLDEEIEQKIKEREEARKAKNYALADKIRDELRARGIILED 455 >gi|312862597|ref|ZP_07722838.1| cysteine--tRNA ligase [Streptococcus vestibularis F0396] gi|311101857|gb|EFQ60059.1| cysteine--tRNA ligase [Streptococcus vestibularis F0396] Length = 447 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 260/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFIPLTENVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + S ++ K F++DT +L T Sbjct: 57 CGYTVNYISNFTDVDDKIIKAANEAGIST------KELSDKFITAFMEDTAQLGIKPATQ 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-- 179 PR N++ ++I + +I G AY A ++ F + NY + + +++ ++G Sbjct: 111 NPRVINYMDEIIAFVSTLIDKGFAYVAEGDVYFRVAKSKNYAKLANKTLEDLEIGASGRT 170 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DAETDRKENPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV-- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 V+R + YR+PI+FT + + +AE+ L K+ + + S + D Sbjct: 287 -----DGQVLRFFLATQQYRKPINFTEKAIHDAEVNL-KYLKNTHSLPLTDQVNQDELQT 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNK 403 A A+ +D NT + + L +A+ ++ N+D + F + GI +E L++ Sbjct: 341 YLDAFQVAMDDDFNTANGVTVLFDMAKWINSGNYDETVKDAFEKMLQVFGIVFEEEVLDE 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 401 D----IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|310820623|ref|YP_003952981.1| cysteinyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] gi|309393695|gb|ADO71154.1| Cysteinyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] Length = 488 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 179/489 (36%), Positives = 258/489 (52%), Gaps = 68/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++NTL + +P +R+YVCGPTVY + HIGNAR FDV+ R LRY G + Sbjct: 6 IALFNTLTMQKEPLVTAEPGVVRLYVCGPTVYSYIHIGNARTFTSFDVVVRYLRYR-GYR 64 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TD+DDKII +A E P+ + + + F DT L + P P+ Sbjct: 65 -VHYVRNYTDVDDKII-KAAHETGEEPV-----ALAGRFVKIFQDDTRALHLVEPDVAPK 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+P+++ +I+ ++ G AYE+ ++ F SS P Y S+RK+D+ G RV Sbjct: 118 VSEHLPEILRIIETLVAKGVAYESQGDVYFSVSSYPEYAKLSKRKLDDLCAGERVQPGEQ 177 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP W+SPWG+GRPGWHIECSAMS+ YLG+ FDIHGG LDLIFPH Sbjct: 178 KREPLDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSAKYLGESFDIHGGALDLIFPH 237 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+H GFL++EG KMSKS GN + + + L A Sbjct: 238 HENEIAQSEAASG-KPFAKYWMHCGFLDIEGAKMSKSLGNVVRLRDALTRVD-------A 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGII--DPAV 351 +R L THYR P+ F+ + + ++E L + +T +G + +P Sbjct: 290 EALRFFFLSTHYRHPLHFSDKAIADSEYRLEYFYETLRKVDERVGGKDFGQGPLHGEPGR 349 Query: 352 L-----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS----------------AH 390 +A+ +D N A+ AL L + D P+ + + + Sbjct: 350 FLQEFEAAMDDDFNCPGALGALSGLFGLMNELTDKPPVKDKALVGRTLQALRDTVRKVSS 409 Query: 391 ILGI--------------EVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQL 435 +LG+ KE + I +A +E+L+ ER K K F+ AD +R +L Sbjct: 410 VLGLFEDDPTQWLLRRRDRAVKE---RGIDVAQVERLLSERNEARKSKNFAEADRLRSEL 466 Query: 436 ESKGFILED 444 + +G + D Sbjct: 467 KGQGVEIMD 475 >gi|302024504|ref|ZP_07249715.1| cysteinyl-tRNA synthetase [Streptococcus suis 05HAS68] gi|330833540|ref|YP_004402365.1| cysteinyl-tRNA synthetase [Streptococcus suis ST3] gi|329307763|gb|AEB82179.1| cysteinyl-tRNA synthetase [Streptococcus suis ST3] Length = 447 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 256/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+ N TD+DDKII+ A + + ++ K F +D +L T PR Sbjct: 61 -VTYISNFTDVDDKIIKAANEAGMTT------KELSDKFIAAFKEDVAKLGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I +Q +I G+AYEA+ ++ F NY + + + + + G RV E Sbjct: 114 VIDYMGEIIDFVQVLIDKGYAYEASGDVYFRVEKAENYARLANKTLSDLEAGASGRVEGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GQLKEHPFDFALWKTAKPGEVSWESPWGAGRPGWHIECSVMATEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS C + AN W+HN LN+ KMSKS GNF+T +++LE Sbjct: 234 FPHHTNEIAQSECKTG-QTFANYWMHNAMLNINDEKMSKSLGNFLTAHDMLE-------Q 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R + HYR P+++T + +++AEI L T T + +D + L Sbjct: 286 IDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVDKSALELHLAAF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I A+ A+ ++ N+D + F + GI +E L+ Sbjct: 346 EAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLEVFGIVFEEEVLDSE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IEALIAERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|16799348|ref|NP_469616.1| cysteinyl-tRNA synthetase [Listeria innocua Clip11262] gi|21264012|sp|Q92F36|SYC_LISIN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|16412700|emb|CAC95504.1| cysteinyl-tRNA synthetase [Listeria innocua Clip11262] Length = 471 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 174/476 (36%), Positives = 254/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L T PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKATVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT A W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFAKYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI------- 346 VIR ML HYR+PI L +A+ L + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARES----TKN-------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + +K + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLSKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKDIILED 461 >gi|121605784|ref|YP_983113.1| cysteinyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] gi|187629840|sp|A1VRB4|SYC_POLNA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120594753|gb|ABM38192.1| cysteinyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] Length = 463 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 179/470 (38%), Positives = 255/470 (54%), Gaps = 50/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + +F + P +RMYVCG T+YD HIG+AR M+ FDV+ R L+ E Sbjct: 3 LRIYNTLSRAVEDFSPLVPGQVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + +I +T + +D L PT +PR Sbjct: 62 -VRYVRNITDIDDKIIKRAVERGITI------RALTDEMIAAMHQDIGALGIEPPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY ++ ++ + P YG S + +DE + G RV Sbjct: 115 ATEYVPQMLAMIGKLEEKGLAYRGSSGDMNYAVRKFPGYGKLSGKSLDELRAGERVAVLE 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESP-----WGRGRPGWHIECSAMSSHYLGKVFDIHG 235 K +P DF+LWK + EP W+S +G+GRPGWHIECSAMS LG+ FDIHG Sbjct: 175 GKDDPLDFVLWKSAKESEPEDAKWDSAALGHDYGKGRPGWHIECSAMSCQTLGETFDIHG 234 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DL FPHHENEIAQS A+ + A W+HNGF+ ++ KMSKS GNF TI ++L+ Sbjct: 235 GGADLQFPHHENEIAQSEGANG-KPLARFWVHNGFVRVDNEKMSKSLGNFFTIRDVLQ-- 291 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL--- 352 + A IR ++ HYR ++++ L +A L + T+ ++ PA + Sbjct: 292 -----KYDAETIRFFIIRAHYRSALNYSDAHLDDARNSLKR---LYTALALVAPATVEID 343 Query: 353 ----------SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVC 397 +A+ D T AI L +LA E K H LL A +L E Sbjct: 344 WADPFAARFKAAMDEDFGTPEAIAVLFELAGEVNKTHSAERAGLLKSLGACLGLLQGEPS 403 Query: 398 KEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L + AI+ L+ +R K + F++AD IR +L +G +L+D Sbjct: 404 A-YLQAGAGLDDAAIQALITQRADAKKARDFAAADRIRTELLGQGIVLKD 452 >gi|145630616|ref|ZP_01786395.1| cysteinyl-tRNA synthetase [Haemophilus influenzae R3021] gi|144983742|gb|EDJ91192.1| cysteinyl-tRNA synthetase [Haemophilus influenzae R3021] Length = 369 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 151/333 (45%), Positives = 207/333 (62%), Gaps = 17/333 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDTLNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+N +++FD S YG SR+ + + + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLGQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHG-GQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVL-------NHYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 A +R +L HYR ++++ + L A+ L + Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALER 318 >gi|223933939|ref|ZP_03625899.1| cysteinyl-tRNA synthetase [Streptococcus suis 89/1591] gi|223897386|gb|EEF63787.1| cysteinyl-tRNA synthetase [Streptococcus suis 89/1591] Length = 447 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 256/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+ N TD+DDKII+ A + + ++ K F +D +L T PR Sbjct: 61 -VTYISNFTDVDDKIIKAANEAGMTT------KELSDKFIAAFREDVAKLGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I +Q +I G+AYEA+ ++ F NY + + + + + G RV E Sbjct: 114 VIDYMDEIIDFVQVLIDKGYAYEASGDVYFRVEKAENYARLANKTLSDLEAGASGRVEGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GQLKEHPFDFALWKTAKPGEVSWESPWGAGRPGWHIECSVMATEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS C + AN W+HN LN+ KMSKS GNF+T +++LE Sbjct: 234 FPHHTNEIAQSECKTG-QTFANYWMHNAMLNINDEKMSKSLGNFLTAHDMLE-------Q 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R + HYR P+++T + +++AEI L T T + +D + L Sbjct: 286 IDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVDKSALELHLAAF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I A+ A+ ++ N+D + F + GI +E L+ Sbjct: 346 EAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLEVFGIVFEEEVLDSE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IEALIAERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|332359270|gb|EGJ37091.1| cysteine--tRNA ligase [Streptococcus sanguinis SK49] Length = 447 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I +++++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VVEFMADIIRFVEDLVDKGYAYESEGDVYFRVEKSRDYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN-- 357 V+R HYR+PI+FT + + +A L T G D L A + Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSNQLQAFLDKF 345 Query: 358 ------DLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKEAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELATQGIKLLDTK---DGVRWTR 446 >gi|153940395|ref|YP_001392856.1| cysteinyl-tRNA synthetase [Clostridium botulinum F str. Langeland] gi|187629802|sp|A7GJ96|SYC_CLOBL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|152936291|gb|ABS41789.1| cysteine--tRNA ligase [Clostridium botulinum F str. Langeland] gi|295320834|gb|ADG01212.1| cysteine--tRNA ligase [Clostridium botulinum F str. 230613] Length = 465 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 263/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINIDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 458 -QGVRWKQ 464 >gi|253681484|ref|ZP_04862281.1| cysteine--tRNA ligase [Clostridium botulinum D str. 1873] gi|253561196|gb|EES90648.1| cysteine--tRNA ligase [Clostridium botulinum D str. 1873] Length = 466 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 173/487 (35%), Positives = 259/487 (53%), Gaps = 53/487 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y G K Sbjct: 1 MKLFNTMTRQKEEFKPIKDGEVSMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E N + + + ++ KD L T PR Sbjct: 60 -VNFIQNFTDIDDKMIKKANEE------NVTVKELGDRFINEYYKDADGLNIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I ++++I G+AYE + ++ F T YG S + +D+ + G R+ Sbjct: 113 ATEFMDEIISFVKDLIDKGYAYEVDGDVYFSTKKFAEYGKLSGQNLDDLQAGARITVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK P EP WESPWG+GRPGWHIECS M+ LG DIH GG DL+FPH Sbjct: 173 KQDPMDFAIWKNEKPGEPSWESPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+H+ +LN+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARNG-KDFANYWMHSAYLNINNKKMSKSLNNFFTTREILE-------RYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKW---PQTSTSKGII 347 VIRL ML HYR P++F+ + L A E LL + T K I Sbjct: 285 EVIRLFMLSAHYRTPLNFSDELLESAKASNERLYNSIGNLERLLDEVKIEEMTGVEKEYI 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASAHI---LG-- 393 + + +D NT AI + L +E + N S + LG Sbjct: 345 KVLNSYKEKYIEKMDDDFNTADAIAVIFDLIKEINTHVNTDSSKELVNYSLELIRELGMP 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ +++ IE L+++R K + ++ AD IR L+++G +LED + Sbjct: 405 LGILQKSTIVDLNAEIEGLIEQRQKARKDRDWALADKIRDDLKARGIVLED------TAQ 458 Query: 454 MTRWKQK 460 RWK++ Sbjct: 459 GVRWKKE 465 >gi|126641281|ref|YP_001084265.1| cysteinyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] Length = 447 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 180/454 (39%), Positives = 260/454 (57%), Gaps = 51/454 (11%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD+ HIG+AR M+ FD + R LR G K V Y+RNITDIDDKII+RA + Sbjct: 1 MYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQ-GWK-VRYIRNITDIDDKIIKRANEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + I +T++ +D L CLAP P+AT +I QM +I N++ G AY Sbjct: 58 -----GETIQQLTTRFIDAMNEDAANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYP 112 Query: 148 ANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKYHKKNPADFILWKRSTPMEPGW 204 A+N ++ F+ + YG S RK+++ + G RV + KK+P DF+LWK + EP W Sbjct: 113 ASNGDVYFEVTKFEKYGRLSGRKLEDMQAGASERVDVEVEKKHPFDFVLWKHAKENEPSW 172 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FPHHENEIAQS A E+ N Sbjct: 173 ASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLMFPHHENEIAQS-EASTGEQYVNY 231 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 W+H GF+N++G KMSKS GNF TI +++E + VIR ++ +HYR P++F+ Sbjct: 232 WMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFHPEVIRYFIVSSHYRSPVNFSD 284 Query: 325 QRLTEAEILLSKWPQT---------STSKGIIDPAVL----SALYNDLNTVSAIQALHKL 371 L EA+ L+++ + T+ +D + + +A+ +D NT A+ L +L Sbjct: 285 VALKEAKTSLTRFYHSFKAYQQVYGQTTTEALDQSFIERFNNAMCDDFNTAEAMAVLFEL 344 Query: 372 ARE-----STKNHDLLPIFNAS----AHILGI------EVCKEHLNKNI----SIAIEKL 412 +E + D + ++ +ILG+ + K + ++ IE Sbjct: 345 NKELNRAVKEEQADQATVLYSTLRHLTNILGLVQHNVDDFLKSDIGQDALALSDAEIEDF 404 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +Q+R+ K K F+ AD IR+ L +G +LED + Sbjct: 405 IQQRVDAKKAKDFAKADSIRQSLLEQGVVLEDTR 438 >gi|171778429|ref|ZP_02919587.1| hypothetical protein STRINF_00438 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282830|gb|EDT48254.1| hypothetical protein STRINF_00438 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 448 Score = 299 bits (765), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 262/469 (55%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y G K Sbjct: 3 IKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + K F++D L T PR Sbjct: 62 -VNYISNFTDVDDKIIKGAAAAGMDT------KAFSDKFIAAFMEDVKELGVEPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I +++++ G AYEAN ++ F + NY + + +++ ++G RV E Sbjct: 115 VIDYMDEIIAFVKDLVDKGFAYEANGDVYFRVAKSKNYAKLANKTLEDLEVGASGRVDGE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG+GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 GDIKENPLDFALWKAAKPGEVSWKSPWGQGRPGWHIECSVMATSILGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 235 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPAVL------ 352 V+R + YR+P++FT + + +A + L T T +D A L Sbjct: 288 --DGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLGEAVDSAELEKFKAD 345 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHDLLP--IFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I + +A+ ++ N+D + F + G+ +E L+ + Sbjct: 346 FEAAMDDDFNTANGITVVFDMAKWINSGNYDQVTKDTFAKILAVFGVVFEEEVLDAD--- 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE LV++R + F++AD IR QL ++G L D K +G R TR Sbjct: 403 -IEALVEKRQEARANRDFATADAIRDQLAAQGIKLLDTK---DGVRWTR 447 >gi|254831936|ref|ZP_05236591.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 10403S] Length = 471 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 252/476 (52%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQMISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG ++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGFKLENTQSDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|134296083|ref|YP_001119818.1| cysteinyl-tRNA synthetase [Burkholderia vietnamiensis G4] gi|166200137|sp|A4JFD0|SYC_BURVG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|134139240|gb|ABO54983.1| cysteinyl-tRNA synthetase [Burkholderia vietnamiensis G4] Length = 465 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 176/472 (37%), Positives = 253/472 (53%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITD+DDKII RA + ++I +T + D L P + Sbjct: 61 YR-VTYVRNITDVDDKIIRRA------VENGESIKSLTDRFIGAMHDDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A++ ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEQLEANGYAYQASDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKAEDPEGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D+NT A+ L +LA E + D + L Sbjct: 343 PYAQRFAAAMNDDINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 H + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQGAGSAHAGALAADEIEARIAARVAAKQAKDYAEADRIRAELLEAGIALED 454 >gi|313639766|gb|EFS04515.1| cysteinyl-tRNA synthetase [Listeria seeligeri FSL S4-171] Length = 471 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 175/476 (36%), Positives = 254/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIKAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S + + E + G RV Sbjct: 115 VTENMDEIIQLITTLIEKGYAYESAGDVYFRTKKFEDYGKLSGQALSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DLIFPH Sbjct: 175 KQDELDFTLWKAAKPDEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHQDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARES----TKN-------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + +K + L + Sbjct: 346 WLEQLTELKHAFEEDMDDDFNTANAITTFHELAKRANIYLSKEVVSVNVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLEYTQTESLADSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|307104948|gb|EFN53199.1| hypothetical protein CHLNCDRAFT_137034 [Chlorella variabilis] Length = 606 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 212/372 (56%), Gaps = 42/372 (11%) Query: 3 KKIKIYNTLERKITEFQ--AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +++ ++NTL R+ F+ A + + MYVCG TVYD++HIG+AR + FDV+YRLLR+ Sbjct: 72 RELLLHNTLTRQKEVFRPRADQGNRVSMYVCGVTVYDYSHIGHARAYVAFDVIYRLLRHL 131 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VTYVRN TD+DDKII RA P+ A I +F D L CL P Sbjct: 132 --GYAVTYVRNFTDVDDKIIARAAAAGEE-PLALARRFIA-----EFHADMELLGCLPPD 183 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT +IP M+ +IQ II HGHAY ++ FD +S+P YG S R ++ + G RV Sbjct: 184 LEPRATEYIPHMVAMIQRIIDHGHAYAVGGDVFFDVASLPGYGRLSGRSQEDNRAGERVA 243 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+ ADF LWK + P EP WESPWG GRPGWHIECSAM LG+V DIHGGG DL Sbjct: 244 VDERKRGAADFALWKAAKPGEPTWESPWGPGRPGWHIECSAMIREVLGEVIDIHGGGRDL 303 Query: 241 IFPHHENEIAQ--------SCCADRI-----------------EKTANIWIHNGFLNLEG 275 +FPHHENE+AQ SC D ++ W+HNGF+N++ Sbjct: 304 VFPHHENELAQSRAASGACSCGHDHGAATASASASNGSGGGGQDEFVRYWLHNGFVNVDS 363 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 KMSKS GNF TI E++ + +R ++ T YR+PI++T + L EA + Sbjct: 364 EKMSKSLGNFFTIREVVA-------QYHPRALRWFLVGTQYRQPINYTQRALEEASDRVF 416 Query: 336 KWPQTSTSKGII 347 QT G + Sbjct: 417 YLYQTLADMGAV 428 >gi|296877283|ref|ZP_06901323.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] gi|296431803|gb|EFH17610.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] Length = 447 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 176/466 (37%), Positives = 248/466 (53%), Gaps = 35/466 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I +AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMDDIIRFVADLIEKDYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +DPA L Sbjct: 288 ---GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGEVDPADLEGFVDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 +A+ D+N + I + +LA+ H + +A +L + + + IE Sbjct: 345 FIAAMDEDINAANGITVVFELAKWINSGHYNQDVKDALTKML-EVFGVVFVEEVLDADIE 403 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+ ER K F+ AD IR +L ++G L D K G R TR Sbjct: 404 ALIAERQEARAKKDFARADAIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|319943420|ref|ZP_08017702.1| cysteine--tRNA ligase [Lautropia mirabilis ATCC 51599] gi|319743235|gb|EFV95640.1| cysteine--tRNA ligase [Lautropia mirabilis ATCC 51599] Length = 506 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 185/527 (35%), Positives = 263/527 (49%), Gaps = 89/527 (16%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +K+YN+L R+ +FQ ++ + +YVCG TVYD+ HIG+AR ++ FDV+ R LR Sbjct: 1 MARTLKLYNSLTRRKEDFQPLEAGRVGLYVCGMTVYDYCHIGHARMLVAFDVVQRWLRAR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VTYVRNITDIDDKII RA + + +S +T + +D L P Sbjct: 61 GYQ--VTYVRNITDIDDKIIRRA------VENGETLSSLTGRFIAAMHEDEAALGIQRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +PRAT ++PQM+ L+ + +G+AY + + + +F YG + +D+ + G RV Sbjct: 113 LEPRATQYVPQMLDLVSLLEKNGYAYRSGDGDTLFRVRRFAGYGRLGGKSLDDLRAGERV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K++P DF+LWK + P EP W+ P+G GRPGWH+ECSAMS+ LG+ FDIHGG Sbjct: 173 AVAAGKEDPFDFVLWKAAKPEEPAEACWQGPFGPGRPGWHLECSAMSTRLLGRQFDIHGG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANI---WIHNGFLNLEGRKMSKSNGNFITINELLE 293 G DL FPHHENEIAQS A E + W+HNGF+ ++G KMSKS GNF TI ++L Sbjct: 233 GADLQFPHHENEIAQSDAAYFPEGGKSFVRYWLHNGFVQVDGEKMSKSLGNFFTIRDVL- 291 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE--------ILLSKWPQTSTS-- 343 KKF G VIR ++ +HYR ++++ L +A L + WP Sbjct: 292 -KKFDGE-----VIRFFIVRSHYRSQVNYSDAGLDDARESLLRLYNALSTDWPAAQAQVE 345 Query: 344 ------------------------------KGIID---PAVL---SALYNDLNTVSAIQA 367 ID P + A+ +D NT A+ Sbjct: 346 GQAGQGAAVSAGAGQAAAAACADGEAARAAVAAIDWSEPRAMRFAEAMDDDFNTPVAVSV 405 Query: 368 LHKLARESTKNHD---------------LLPIFNASAHILGIEVCKEHLNKNISIAIEKL 412 L +LA + + D LL + G+ H AI+ L Sbjct: 406 LFELATDLNRTRDPAIERQLRGLAAVLGLLGQDPVAVRRNGLRGAAAHEGDLDDNAIQAL 465 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 V RL K + F+ AD IR+QL G LED G T W++ Sbjct: 466 VDARLAARKARNFAEADAIRQQLAEAGITLED------GPAGTTWRR 506 >gi|149002271|ref|ZP_01827213.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69] gi|237650136|ref|ZP_04524388.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974] gi|237821667|ref|ZP_04597512.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2] gi|147759586|gb|EDK66577.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69] Length = 447 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 179/468 (38%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + P + K F +D L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREEGVT-PQE-----VADKYIAAFREDVAALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I ++++I AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKDFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---HILGIEVCKEHLNKNISIA 408 +A+ D N + I + ++A+ + + A A I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K +G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTK---DGVRWTR 446 >gi|322517683|ref|ZP_08070546.1| cysteine--tRNA ligase [Streptococcus vestibularis ATCC 49124] gi|322123671|gb|EFX95263.1| cysteine--tRNA ligase [Streptococcus vestibularis ATCC 49124] Length = 447 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 173/473 (36%), Positives = 260/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MY+CGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENVVNMYICGPTVYNYIHIGNARSAVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + S ++ K F++DT +L T Sbjct: 57 CGYTVNYISNFTDVDDKIIKAANEAGIST------KELSDKFITAFMEDTAQLGIKPATQ 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-- 179 PR N++ ++I + +I G AY A ++ F + NY + + +++ ++G Sbjct: 111 NPRVINYMDEIIAFVSTLIDKGFAYVAEGDVYFQVAKSKNYAKLANKTLEDLEIGASGRT 170 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DAETDRKENPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGNTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV-- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 V+R + YR+PI+FT + + +AE+ L K+ + + S + D Sbjct: 287 -----DGQVLRFFLATQQYRKPINFTEKAIHDAEVNL-KYLKNTHSLPLTDQVNQDELQT 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNK 403 A A+ +D NT + + L +A+ ++ N+D + F + GI +E L++ Sbjct: 341 YLDAFQVAMDDDFNTANGVTVLFDMAKWINSGNYDETVKDAFEKMLQVFGIVFEEEVLDE 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IEKL++ER K F++AD IR +L ++G L D + G R TR Sbjct: 401 D----IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTR---EGVRWTR 446 >gi|322392299|ref|ZP_08065760.1| cysteine--tRNA ligase [Streptococcus peroris ATCC 700780] gi|321144834|gb|EFX40234.1| cysteine--tRNA ligase [Streptococcus peroris ATCC 700780] Length = 447 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 175/467 (37%), Positives = 251/467 (53%), Gaps = 37/467 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMDDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWNSPWGPGRPGWHIECSVMSTEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKTID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------ 352 V+R HYR+PI+FT + + +AE L T G +D L Sbjct: 288 ---GQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDAGELQAFKDK 344 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHILGIEVCKEHLNKNISIAI 409 +A+ D NT + I + ++A+ ++ N+D +A + + + + I Sbjct: 345 FVAAMDEDFNTANGITVVFEMAKWINSGNYDAAVKETLAAMLE--VFGVVFVEEVLDEEI 402 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 E L+Q+R + F++AD IR QL ++G L D K +G R TR Sbjct: 403 EALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|301299859|ref|ZP_07206093.1| cysteine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852530|gb|EFK80180.1| cysteine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 470 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 265/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + +F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKEKFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A QE +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKII-KASQE-----MNLSVKEITEKFINAFYEDTSALNVKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEK 182 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID EQ +RV + Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 183 YHKKN--PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K P DF LWK++ E W+SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKAKQGEISWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQS-EAKTGKKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KEVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE----STKN-------HDLLPIFNAS 388 + ++ + + +D N + I ++++A++ S K ++L+ + Sbjct: 346 VEVNFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IE+L+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFSEEK--ELLDDTIEQLIQERNEARKNKNFKRSDEIRDLLKEQGIILED---- 459 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 460 --TAQGTRWKR 468 >gi|167586800|ref|ZP_02379188.1| cysteinyl-tRNA synthetase [Burkholderia ubonensis Bu] Length = 407 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 165/393 (41%), Positives = 231/393 (58%), Gaps = 32/393 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIAAMHEDEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+AN+ ++ + NYG S + +D+ + G RV Sbjct: 114 PRATHFIPQMLGMIETLEANGYAYQANDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W+S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWDSKYGAGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N WIHNGF+ ++ KMSKS GNF TI ++LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWIHNGFVQVDNEKMSKSLGNFFTIRDVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ D A L Sbjct: 288 --QYDAEVVRFFIVRTHYRSPLNYSDVHLDDARAALTRL-YTALKDVAPDAAALDWNEPH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD 380 +A+ +D NT A+ L +LA E + D Sbjct: 345 AQRFAAAMNDDFNTSLAVSVLFELAGEVNRTRD 377 >gi|320547739|ref|ZP_08042023.1| cysteine--tRNA ligase [Streptococcus equinus ATCC 9812] gi|320447499|gb|EFW88258.1| cysteine--tRNA ligase [Streptococcus equinus ATCC 9812] Length = 448 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 260/469 (55%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + + MYVCGPTVY++ HIGNAR ++ FD + R Y G K Sbjct: 3 IKIYDTMTRSLREFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYC-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D L T PR Sbjct: 62 -VNYISNFTDVDDKIIKGAAEAGMDT------KAFSDKFIAAFMEDVKELGVEPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 ++ ++I +++++ G AYEAN ++ F + NY + + +++ ++G RV E Sbjct: 115 VIEYMDEIIAFVKDLVDKGFAYEANGDVYFRVAKSKNYAKLANKTLEDLEVGASGRVDGE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG+GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 GDIKENPLDFALWKSAKPGEVSWQSPWGQGRPGWHIECSVMATSILGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 235 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPAVL------ 352 V+R + YR+P++FT + + +A + L T T + D A L Sbjct: 288 --DGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPVGEVADAAELAKFKDD 345 Query: 353 --SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I + +A+ ++ N+D + F + GI +E L+ + Sbjct: 346 FETAMDDDFNTANGITVIFDMAKWINSGNYDQTVKDTFAKMLAVFGIVFEEEVLDAD--- 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +E L+ +R + F++AD IR QL +G L D K +G R TR Sbjct: 403 -VEALIAKRQEARANRDFATADAIRDQLAVQGIKLLDTK---DGVRWTR 447 >gi|317486410|ref|ZP_07945237.1| cysteinyl-tRNA synthetase [Bilophila wadsworthia 3_1_6] gi|316922320|gb|EFV43579.1| cysteinyl-tRNA synthetase [Bilophila wadsworthia 3_1_6] Length = 485 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 182/494 (36%), Positives = 255/494 (51%), Gaps = 73/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNT+ RK F + + +Y CG T Y +HIG+AR + FD+L RLLRY E Sbjct: 1 MQFYNTMSRKKETFTPVRKGLVGVYACGITAYALSHIGHARSAVAFDILVRLLRYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII+RA E S + I + + +D RL + +PR Sbjct: 60 -VTFVRNFTDVDDKIIKRANDEGVSS------TEIAETYIKAYHEDMDRLGVIRADIEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +M+ L + +I G AY + ++ F S P YG S R D+ + G RV Sbjct: 113 ATEHIQEMLNLTERLIADGKAYATPSGDVYFRVRSFPGYGKLSGRTPDDLRSGARVVPGD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS Y+ DIHGGGLDLIFP Sbjct: 173 EKEDPLDFALWKSAKPGEPYWESPWGKGRPGWHIECSAMSEKYIPLPLDIHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A + ANIW+HNGF+ ++ KMSKS GNF TI ++LE S+ Sbjct: 233 HHENEIAQTEAA-LGKPLANIWMHNGFVQVDSEKMSKSLGNFKTIRDILE-------SYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----------------ILLSKWPQTSTSKGII 347 A +R + HYR PIDF++ + E+E + W + ++ Sbjct: 285 AETLRYFLAGKHYRSPIDFSLDNMDESERSQKRVYECLREVDKALARENWKPGAAPAELV 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLA------------RESTKNHDLLPIF-NAS 388 D + + AL +D+NT +A+ L + R S D+L F +A+ Sbjct: 345 EELKQQDQSFMDALEDDVNTAAAMGHLFNMVRIAGRVLEDKKLRNSEGGRDILRAFRDAT 404 Query: 389 AH---ILG---------------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 A +LG I + L+ N + L++ER K F+ +D Sbjct: 405 AKWDTLLGLFAQKPEGFLASLREIRARRRGLDMN---KVAGLLRERQEARAAKDFARSDA 461 Query: 431 IRKQLESKGFILED 444 R +L + G + D Sbjct: 462 ARDELAALGVEVRD 475 >gi|300864454|ref|ZP_07109324.1| Cysteinyl-tRNA synthetase [Oscillatoria sp. PCC 6506] gi|300337549|emb|CBN54472.1| Cysteinyl-tRNA synthetase [Oscillatoria sp. PCC 6506] Length = 483 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 252/490 (51%), Gaps = 66/490 (13%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 K+YN+L R++ + I+P +RMY CG TVYD H+G+AR I +DV+ R L + E Sbjct: 4 KLYNSLTRRVEPLETIEPGKVRMYCCGVTVYDNCHLGHARSYIAWDVVRRYLTWRGYE-- 61 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V YV+N TDIDDKI+ RAR+E S+ + + TQ + +D RL L PRA Sbjct: 62 VRYVQNFTDIDDKILNRARKEGSSM------EEVAERYTQTYFEDMKRLNVLEADEYPRA 115 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV---- 179 T+ + + LI + G+AY + ++ + YG S RK DE + G RV Sbjct: 116 THTMDGIKRLIHELESKGYAYASGGDVYYKVRQFSEYGKLSGRKFDEMQAGASGRVESED 175 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E KK+P DF LWK + EP W+SPWG GRPGWHIECSAM G DIHGGG D Sbjct: 176 AEAQKKKDPFDFALWKGAKSGEPAWDSPWGSGRPGWHIECSAMVRQSFGDRIDIHGGGSD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS + A W+HNG + + G KMSKS GNFITI ELL+ Sbjct: 236 LIFPHHENEIAQSEAVTG-QPLATYWLHNGMVKVNGEKMSKSLGNFITIRELLD------ 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLS-------KWPQTSTS 343 + V+RL +L HYR+PIDFT + A+ L W Sbjct: 289 KPTDPMVVRLFVLTAHYRKPIDFTDDAIASAQNGWNTINEGFLFGHEYGSQFGWKLALED 348 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK 403 K + SA+ +D NT +A+ + +LA+E ++ ++L I G EV ++ + Sbjct: 349 KEAVQ-QFQSAMDDDFNTPNALAVVFELAKELRRDRNIL-IHGGKIETPG-EVIQQKWHT 405 Query: 404 NISIA--------------------------IEKLVQERLILLKMKKFSSADYIRKQLES 437 +S+ IE L+Q+RL K K F+ D IR +L+ Sbjct: 406 LVSLLHVLGLTNLVPASATLSADQSGLTDKDIEILIQQRLAARKAKNFAEGDRIRNELKD 465 Query: 438 KGFILEDYKN 447 +G L D K+ Sbjct: 466 RGITLIDQKD 475 >gi|227891227|ref|ZP_04009032.1| cysteinyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] gi|227867101|gb|EEJ74522.1| cysteinyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] Length = 470 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 265/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + +F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKEKFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A QE +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKII-KASQE-----MNLSVKEITEKFINAFYEDTSALNVKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEK 182 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID EQ +RV + Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 183 YHKKN--PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K P DF LWK++ E W+SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKAKQGEISWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQS-EAKTGKKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KEVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE----STKN-------HDLLPIFNAS 388 + ++ + + +D N + I ++++A++ S K ++L+ + Sbjct: 346 VEVNFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IE+L+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFSEEK--ELLGDTIEQLIQERNEARKNKNFKRSDEIRDLLKEQGIILED---- 459 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 460 --TAQGTRWKR 468 >gi|299541906|ref|ZP_07052229.1| cysteinyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] gi|298725644|gb|EFI66285.1| cysteinyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] Length = 466 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 177/488 (36%), Positives = 261/488 (53%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R +Y + Sbjct: 3 IQIFNSLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYFQYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII+ A + + + + +T + + +D T L C PR Sbjct: 62 -VKFVSNFTDVDDKIIKAANE------LGEEVHELTERFIAAYFEDVTALGCKKADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +I IQ +I G+AYE+ ++ + T YG S + +D+ K+G R+ Sbjct: 115 VTEHMDDIIQFIQVLIEKGYAYESAGDVYYRTRKFDGYGKLSHQSVDDLKIGARIEAGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K + DF LWK + P E W+SPWG GRPGWHIECS M+ +LG DIH GG DL FPH Sbjct: 175 KDDALDFALWKAAKPGEIFWQSPWGDGRPGWHIECSVMAREHLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS + +KT A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 235 HENEIAQSEAHN--DKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------KQID 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 ++R ML HYR PI+F ++R+ A + T+ S G L+ Sbjct: 286 PQILRFFMLSVHYRHPINFAKDLVEAAASGLERIRTAYNNVKHRLTTTVSLGDHSEEWLN 345 Query: 354 -----------ALYNDLNTVSAIQALHKLAR-----ESTKN------HDLLPIFNASAHI 391 A+ +D NT +AI L ++AR S N + F + Sbjct: 346 KITEQKAHFEEAMDDDFNTANAISVLFEVARIANIYLSEANTCKKVLETFIETFEVLGDV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGIE K + + IE L+QER+ K + F+ +D IR L+++G ILED + Sbjct: 406 LGIEFAK--EEELLDEEIEALLQERVEARKNRDFARSDEIRDHLQAQGIILEDTRQG--- 460 Query: 452 QRMTRWKQ 459 TRWK+ Sbjct: 461 ---TRWKR 465 >gi|239906952|ref|YP_002953693.1| cysteinyl-tRNA synthetase [Desulfovibrio magneticus RS-1] gi|259511829|sp|C4XSW5|SYC_DESMR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239796818|dbj|BAH75807.1| cysteinyl-tRNA synthetase [Desulfovibrio magneticus RS-1] Length = 485 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 251/491 (51%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ R F + P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQLYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII++A E + I + F +D +L L P +P+ Sbjct: 60 -VTFVRNFTDVDDKIIKKANAEGTTS------QEIAERYIATFYEDMDKLGILRPNAEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I +M L Q +I GHAY + ++ F S YG S R +++ + G RV Sbjct: 113 ATEYIGEMASLAQRLIDSGHAYRTPSGDVYFRVRSFAGYGKLSGRDVEDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK S P EP WESP+G GRPGWH+ECSAMS LG DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKASKPGEPVWESPFGPGRPGWHLECSAMSEKLLGMPIDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E W+HNGF+ + KMSKS GNFITI ++ R P Sbjct: 233 HHENEIAQSEAAIGGE-FCRYWVHNGFVRINTEKMSKSLGNFITIRDIY------ARYLP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----------------ILLSKWPQTSTSKGII 347 V+R +L + YR P+D++ Q L EAE + +KW +T + Sbjct: 286 -EVLRFFLLSSQYRSPLDYSDQGLDEAEKGIKRIYAAKVQMEQALGRAKWSETKLPADVT 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 + +A+ +DLNT A+ + L R + + + +L F Sbjct: 345 EELSRHEEGFTAAMDDDLNTAQAMGHVFGLVRLAGRLMEDKTLAKSRETAEVLGRILADF 404 Query: 386 NASAHILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 A +LG+ + C+ + ++ LV ER K K F+ +D IR Sbjct: 405 GVWAEVLGVFGTDATAFLADLKACRLTRLGIDAARVDGLVAERQDARKAKDFARSDAIRD 464 Query: 434 QLESKGFILED 444 +L S G + D Sbjct: 465 ELASLGVTVMD 475 >gi|226950955|ref|YP_002806046.1| cysteine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] gi|254781234|sp|C1FMX3|SYC_CLOBJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226842951|gb|ACO85617.1| cysteine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] Length = 465 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 262/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTVKE------LGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKSALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 458 -QGVRWKQ 464 >gi|295702329|ref|YP_003595404.1| cysteinyl-tRNA synthetase [Bacillus megaterium DSM 319] gi|294799988|gb|ADF37054.1| cysteinyl-tRNA synthetase [Bacillus megaterium DSM 319] Length = 465 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 255/487 (52%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL R+ F ++ + ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IKLYNTLTRQKETFVPLEENKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A++ +P I ++ + +DT+ L C PR Sbjct: 62 -VEYVSNFTDVDDKLIKAAKELGEDVPT------IANRFIDAYFEDTSALGCKHADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I ++ +AYE+ ++ + T YG S + IDE + G R+ Sbjct: 115 VTENMDIIIEFIDELVKKEYAYESEGDVYYRTRKFEGYGKLSHQSIDELQSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDPLDFTLWKATKDGEIAWDSPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KSFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFT---------------------VQRLTEAEILLSKWPQTSTS 343 ++R +L HYR PI++ RL A L + Sbjct: 287 SLLRFFILSVHYRHPINYNEEILENTRKGFERLQTAYGNLTHRLEAATNLQEDASEWFEK 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI----FNASAHIL 392 + + + +D NT +AI L +LA+ E T + D++ F + Sbjct: 347 LKELRETFVEEMDDDFNTANAISVLFELAKQANLYLLEQTTSTDVIEAFIKEFKELGTAI 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI + L + I++L+Q+R+ K + F AD IR +L++K ILED Sbjct: 407 GITFGEAEL---LDEEIDQLIQDRIQARKDRNFQLADQIRDELKAKNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|118576528|ref|YP_876271.1| cysteinyl-tRNA synthetase [Cenarchaeum symbiosum A] gi|118195049|gb|ABK77967.1| cysteinyl-tRNA synthetase [Cenarchaeum symbiosum A] Length = 455 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 183/456 (40%), Positives = 250/456 (54%), Gaps = 39/456 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++TL+ K E +A D + I Y+CG TVYD AHIG+AR +IVFDVL R L E Sbjct: 1 MRIHDTLDGKKKEVRA-DKAGI--YLCGVTVYDEAHIGHARTIIVFDVLRRHLESRGTE- 56 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V+N TD+DDKIIERAR E S ++++ + + + RL + P Sbjct: 57 -VRLVQNFTDVDDKIIERARSEGTSA------QELSARYIRAYHAEFGRLGVRRASEYPL 109 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+++ LI++++ G AY A N + F S P YGS SR G RV Sbjct: 110 ATEHMPEILELIKSLVGSGSAYAAPNGVYFSVSGFPRYGSLSR-NTGGLISGARVGIDAG 168 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S +P WESPWGRGRPGWHIECSAM YLG+ F+IHGGG DLIFPH Sbjct: 169 KRDPTDFALWKLSRG-DPSWESPWGRGRPGWHIECSAMCLKYLGETFEIHGGGRDLIFPH 227 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS A + A IW+H G + ++G KMSKS GN ++ LLE W Sbjct: 228 HENEMAQS-EAHTGRRLAKIWMHVGMVTIDGEKMSKSLGNMKSVRFLLE-------RWSP 279 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------WPQTSTSKGIIDPAV 351 +R+ + HY +P+D++ + L E E + P + G + Sbjct: 280 GAMRIFCIAGHYSKPVDYSEELLEEHETFWERARLAYHVLVQGKPAPGGDDTAGRLWAEF 339 Query: 352 LSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +AL +DLNT A+ A L K+ +LL IF+A +LG+E+ L Sbjct: 340 GNALDDDLNTHLALDAFRSLVSYCLGGPKDSELLRIFDAMLGVLGLEIPV--LTGGERTR 397 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E L+ ER L + AD+IR L SKG L+D Sbjct: 398 VEGLISERARLRGNGLYDEADHIRDNLASKGITLQD 433 >gi|256829728|ref|YP_003158456.1| cysteinyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] gi|256578904|gb|ACU90040.1| cysteinyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] Length = 485 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 178/494 (36%), Positives = 253/494 (51%), Gaps = 73/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L RK EF + P ++ MYVCG T YD+ HIG+AR +VFDVL R LRY + Sbjct: 1 MQIYNSLTRKKEEFIPLKPGHVSMYVCGITAYDYCHIGHARSAVVFDVLVRYLRYIGMQ- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII RA +E I F D RL L +P+ Sbjct: 60 -VTFVRNFTDVDDKIINRANREGTDF------ESIARSYIDAFYTDMDRLGILRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L +N+I HAY + ++ F S +YG S R I++ G R+ Sbjct: 113 ATEHIKEMIELCENLIAKKHAYSTPSGDVYFRVRSYADYGKLSGRNIEDLMSGARIEPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS YL FDIHGGG DL FP Sbjct: 173 EKEDPLDFALWKGAKPGEPSWPSPWGPGRPGWHIECSAMSERYLPLPFDIHGGGQDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ A ++ W+HNGF+ + KMSKS NF+TI ++L ++ Sbjct: 233 HHENERAQTEAATD-KQFVRYWVHNGFVQINSEKMSKSLNNFVTIRDILA-------NYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGII 347 V+R ++ HYR P+D+T L E+E L +KW T I+ Sbjct: 285 PEVLRFFLITKHYRSPLDYTSDALEESERALKRIYLTKTAAEAHVAGTKWTATPLPAEIV 344 Query: 348 DPAVL------SALYNDLNTVSAIQAL------------HKLARESTKNHDL----LPIF 385 A ++ +D+NT +A+ + K ++S + D+ L +F Sbjct: 345 VEATALEAKWDDSMADDMNTAAALGHVFVLMKIVNRILEDKTLKKSEQGRDMIRHALKLF 404 Query: 386 NASAHILGI---------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 +LG+ V + ++ ++ ++ +QER K F+ +D Sbjct: 405 ERWGEVLGLFLMPSSDFLTQLKESRVLRRKIDTDL---VQTKLQERKEARAAKDFARSDA 461 Query: 431 IRKQLESKGFILED 444 IR +L + G ++D Sbjct: 462 IRDELLALGVTIQD 475 >gi|89100736|ref|ZP_01173591.1| cysteinyl-tRNA synthetase [Bacillus sp. NRRL B-14911] gi|89084553|gb|EAR63699.1| cysteinyl-tRNA synthetase [Bacillus sp. NRRL B-14911] Length = 465 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 256/487 (52%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNT+ R+ EF ++ ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IAIYNTMSRQKEEFIPLEEGKVKMYVCGPTVYNYIHIGNARPPIVFDTVRRYLEFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I A++ +P I + + +D + L C PR Sbjct: 62 -VQYISNFTDVDDKLIRAAKELGEDVPS------IAERFIDAYFEDVSALGCKRADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ +I G AYE+N ++ F T YG S++ IDE ++G R+ Sbjct: 115 VTESMDLIIQFIEALIEKGFAYESNGDVYFHTRRFDEYGKLSQQSIDELRVGARIAVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDALDFALWKTAKEGEISWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS---------KG 345 V+R ML HYR PI+++ ++R+T + L+ + S K Sbjct: 287 QVLRFFMLSVHYRHPINYSDELLENTRSGLERITTSYQNLAHRKEASAELTDNNSEWLKK 346 Query: 346 IID--PAVLSALYNDLNTVSAIQALHKLAREST-----KNHDLLPI------FNASAHIL 392 I D + + +D NT + I L +L+R++ KN + I F +L Sbjct: 347 IEDLHGEFIKEMDDDFNTANGISVLFELSRQANYYLLEKNTSVEVIEAFMKEFEILFDVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + E L + I+ L+++R K + F +D IR QL+ ILED Sbjct: 407 GLSLGGEEL---LDDEIDALIEKRNQARKERNFQLSDQIRDQLKEMNIILEDTAQG---- 459 Query: 453 RMTRWKQ 459 TRWK+ Sbjct: 460 --TRWKR 464 >gi|328944848|gb|EGG39008.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1087] Length = 447 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 251/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEEGIT-PKE-----VADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKGIID------PAV 351 V+R HYR+PI+FT + + +A + L + + Q T + D Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSDQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKVAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L+ ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIDERQEARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|218885586|ref|YP_002434907.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735052|sp|B8DKL0|SYC_DESVM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218756540|gb|ACL07439.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 485 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 178/491 (36%), Positives = 246/491 (50%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F+ P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQLYNTLTRKKEHFEPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ RN TD+DDKII RA QE + + K F +D RL L +PR Sbjct: 60 -VTFARNFTDVDDKIITRANQEGLTS------QEVAEKYIATFYEDMDRLNVLRADLEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L +I AY + ++ F + P YG S R +D+ + G RV Sbjct: 113 ATTHIEEMISLCVRLIEQDKAYATPSGDVYFRVRAFPGYGKLSGRDVDDLRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG GRPGWHIECSAMS +L DIHGGG DL+FP Sbjct: 173 EKEDPLDFALWKAAKPGEPFWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A + W+HNGF+ + KMSKS GNF TI ++LE ++ Sbjct: 233 HHENEIAQTEAA-LGKDFVRYWVHNGFVQVNAEKMSKSLGNFRTIRDILE-------NYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGII 347 +R +L HYR PIDFT + + EAE L KW K + Sbjct: 285 PETLRYFLLTKHYRSPIDFTFESMDEAEKNLKRIYEALGLLHAELEREKWTSGPLPKDVT 344 Query: 348 DP------AVLSALYNDLNTVSAIQALHKLARESTKNHD--------------------- 380 + A A+ +D+NT +A+ + + R + + D Sbjct: 345 EEFEGLRQAFADAMEDDMNTAAALGHVFTMVRLANRILDNKGQRKTEGARAFFRAVLDEA 404 Query: 381 -----LLPIFN--ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +L +F + + + C+ +E+L+Q R+ K F+ AD IR Sbjct: 405 ATWFAVLGVFGREPAGFLAELRACRVARKGIDPAKVEELLQARINARADKDFARADAIRD 464 Query: 434 QLESKGFILED 444 ++ + G + D Sbjct: 465 EIAALGIEVRD 475 >gi|320538832|ref|ZP_08038508.1| cysteinyl-tRNA synthetase [Serratia symbiotica str. Tucson] gi|320030992|gb|EFW12995.1| cysteinyl-tRNA synthetase [Serratia symbiotica str. Tucson] Length = 461 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/482 (36%), Positives = 248/482 (51%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ ID + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIDAGKVGMYVCGVTLYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII R+ + + +T + + D L P +PR Sbjct: 60 SLNYVRNVTDIDDKIIRRSAEN------AETCDQLTERMLAEMHADFDSLLIERPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + Q +I HAY A+N +++F S P YG S + +++ + G RV Sbjct: 114 ATQHIAEIIAITQRLIDRNHAYVASNGDVMFSIDSDPQYGLLSHQALEQLQAGARVEIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKHNPMDFVLWKMSKPGEPSWQSPWGAGRPGWHIECSAMNCKQLGPHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCA-HDGRYVNYWMHSGMVMIDKEKMSKSLDNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARTALERLYTALRGADADAQPMGGDAFEARFRQA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKE------------- 399 + +D NT A L +LARE KN D + +A + + Sbjct: 346 MDDDFNTPEAYSVLFELAREVNRLKNEDRVAANGMAATLRKLAKVLGLLQQQPEQLLQNG 405 Query: 400 -HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +N IE L+++R + K ++ AD R +L +LED + T W+ Sbjct: 406 AQVNGGEGAEIEALIKQRNEARETKNWALADVARDRLNEMNIVLED------APQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|301051827|ref|YP_003790038.1| cysteinyl-tRNA synthetase [Bacillus anthracis CI] gi|300373996|gb|ADK02900.1| cysteinyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI] Length = 465 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 263/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAD 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ + + + IE+L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELAQ---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDLKDRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|156742112|ref|YP_001432241.1| cysteinyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] gi|156233440|gb|ABU58223.1| cysteinyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] Length = 478 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 193/494 (39%), Positives = 258/494 (52%), Gaps = 65/494 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R + F+ ++P ++MYVCG TVYD AHIG+A IVFDV+ R L Y Sbjct: 3 IRIYNTLTRTLEPFETLEPGVVKMYVCGVTVYDRAHIGHAMSAIVFDVVRRYLEYR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII RA P A S I +F++D L PR Sbjct: 61 AVQHVVNFTDVDDKIINRAHALGRD-PKELAESYIA-----EFLEDLEALNVKRAHIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++ I +I GHAY + ++ F S+ P+YG SRR +D+ G R+ Sbjct: 115 ATETMPEIQRFISRLIETGHAYVVDGDVYFRVSTAPDYGKLSRRSLDDMIAGNRIGIDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAM+ +LG+ DIHGGG DLIFPH Sbjct: 175 KENPADFALWKAAKPGEPFWDSPWGPGRPGWHIECSAMNLAHLGEQIDIHGGGTDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGR---------KMSKSNGNFITINELLETK 295 HENEIAQ+ + A W+HNG L ++ R KMSKS GN +TI E L Sbjct: 235 HENEIAQTESLTG-KTFARYWMHNGMLQIQTRLADGTYKLEKMSKSLGNVVTIREFL--- 290 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDP 349 R P V+RL +L + YR P+ F + + E L++ P + G P Sbjct: 291 ---ARYHP-DVLRLTVLSSSYRSPLAFGEEIAADQERKLARLRSALEPPIGTIEAG---P 343 Query: 350 AV--------------LSALYNDLNTVSAIQALHKLARESTKNHDL----LPIFNASA-- 389 AV ++A+ +D NT A+ AL L R D P A A Sbjct: 344 AVEVLLAAVRTARERFIAAMDDDFNTAGALAALFDLVRSINTARDAGVGGAPFAEAQATF 403 Query: 390 ----HILGIE-VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + + + + I+ LV+ R L K K+F+ AD +R +L G +LED Sbjct: 404 RELVDVLGLTLIAPRPVTQQAAPFIDLLVEVRSELRKAKQFALADMVRDRLAQLGVMLED 463 Query: 445 YKNPDNGQRMTRWK 458 P TRWK Sbjct: 464 --TPQG----TRWK 471 >gi|241764153|ref|ZP_04762188.1| cysteinyl-tRNA synthetase [Acidovorax delafieldii 2AN] gi|241366490|gb|EER60990.1| cysteinyl-tRNA synthetase [Acidovorax delafieldii 2AN] Length = 459 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/462 (38%), Positives = 249/462 (53%), Gaps = 38/462 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + +F ++P ++RMYVCG T+YD HIG+AR M+ FDV+ R L+ G + Sbjct: 3 LRIYNTLSRALEDFSPLEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKAS-GLR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T + +D L P +PR Sbjct: 62 -VTYVRNITDIDDKIIRRALERGITI------RQLTDEMIAAMHQDIGALGIEPPAVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ LI + G AY A N ++ + YG S + +DE + G RV + Sbjct: 115 ATEYVPQMLSLIGQLEGKGLAYRATNGDVNYSVRKFAGYGKLSGKSLDELRAGERVAVQD 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W+SP+G GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 175 GKEDPLDFVLWKSAKPEEPPEAKWDSPFGTGRPGWHIECSAMSCATLGETFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A W+HNGF+ ++ KMSKS GNF TI ++L+ Sbjct: 235 QFPHHENEIAQSEGATG-KPLAKFWVHNGFVRVDNEKMSKSLGNFFTIRDVLQ------- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVL 352 + A +R ++ HYR ++++ L +A L + P S DP Sbjct: 287 QYDAETVRFFIVRAHYRSALNYSDAHLDDARQALKRLYTALSLVAPSEVASIDWADPYAA 346 Query: 353 ---SALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ D T AI L LA E T++ L + A A LG+ Sbjct: 347 RFKAAMDEDFGTPEAIAVLFDLASEVNKTRSPQLAGLLKALAGCLGLLQGDPQAFLQAGA 406 Query: 408 AIEKLVQERLILLKM-----KKFSSADYIRKQLESKGFILED 444 ++ + I + K F+ AD IR L ++G +L+D Sbjct: 407 GFDEAAIQAQIAARAAAKAGKDFAEADRIRNALLAQGIVLKD 448 >gi|331268391|ref|YP_004394883.1| cysteinyl-tRNA synthetase [Clostridium botulinum BKT015925] gi|329124941|gb|AEB74886.1| cysteinyl-tRNA synthetase [Clostridium botulinum BKT015925] Length = 472 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/496 (35%), Positives = 263/496 (53%), Gaps = 69/496 (13%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y G Sbjct: 6 KMKLFNTMTRQKEEFKPIKDGEVNMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYK-GY 64 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V +++N TDIDDK+I++A +E N + + + +++ KD+ L T P Sbjct: 65 K-VNFIQNFTDIDDKMIKKANEE------NITVKELGDRFIEEYYKDSDGLNIKRATVNP 117 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT + +++ ++++I G+AY+ + ++ F T YG S + +++ + G R+ Sbjct: 118 RATEFMDEIVAFVKDLIDKGYAYKVDGDVYFSTKKFTEYGKLSGQNLEDLQAGARITVDE 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK P EP WESPWG+GRPGWHIECS M+ LG DIH GG DL+FP Sbjct: 178 RKQDPMDFAIWKNEKPGEPSWESPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + AN W+H+ +LN+ +KMSKS NF T E+LE + Sbjct: 238 HHENEIAQSEARNG-KAFANYWMHSAYLNINNKKMSKSLNNFFTTREILE-------RYD 289 Query: 304 APVIRLAMLMTHYREPIDFT-----------------------------VQRLTEAEILL 334 A VIRL ML HYR P++F+ ++++TE E Sbjct: 290 AEVIRLFMLSAHYRTPLNFSDELLESAKASNERLYNSIGNLERLLDEVKIEKMTEDEKEY 349 Query: 335 SKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE------STKNHDL----LPI 384 +K + K I + +D NT AI + L +E + + +L L I Sbjct: 350 TKVLNSYKEKYI------EKMDDDFNTADAIAVIFDLIKEINTHVNADSSKELVNYSLEI 403 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LGI L+ N IE L+++R K + ++ AD IR L+++G +LED Sbjct: 404 IRELGMPLGILQKSTMLDLNAE--IEGLIEQRQQARKDRNWALADKIRDDLKARGIVLED 461 Query: 445 YKNPDNGQRMTRWKQK 460 P + RWK++ Sbjct: 462 --TP----QGVRWKKE 471 >gi|329936176|ref|ZP_08285969.1| cysteinel-tRNA ligase [Streptomyces griseoaurantiacus M045] gi|329304286|gb|EGG48166.1| cysteinel-tRNA ligase [Streptomyces griseoaurantiacus M045] Length = 466 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 252/471 (53%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD+L R Y + Sbjct: 3 IRLYDTSARQIRDFVPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDILRRWFAYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKII + A Q P I +N + F + T L CL PT++P Sbjct: 62 -VTFVRNVTDIDDKIITKSADQGRPWWAIG-------YENERAFNEGYTALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M+ +++ +I GHAYEA+ + FD S P Y S +++D + + E Sbjct: 114 RATGHITEMVEMMRTLIERGHAYEADGNVYFDVRSFPGYLELSNQELDNLQQPSSGGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WE+PWG GRPGWH+ECSAM+ YLG FDIHGGGLDLIFP Sbjct: 173 GKRDPRDFALWKAAKPGEPTWETPWGPGRPGWHLECSAMAHKYLGSAFDIHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAYG--DEFARYWLHNAWVTMSGEKMSKSLGNSVLVSEMV-------KRWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIID------PAVL 352 V+R + HYR I+++ + L EAE ++ + G+++ PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEESLREAESAFARIEGFVQRVVELAGGVVEPSAEVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH--- 400 A+ +DL A+ +H R+ L A +LG++ E Sbjct: 344 EAMDDDLGVPQALAVVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDEQWAA 403 Query: 401 -------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R K +++AD IR QL G I+ED Sbjct: 404 ANDGGEDLHGVVDTLVRMVLDQREAARARKDWTTADAIRDQLGQSGLIIED 454 >gi|289433593|ref|YP_003463465.1| hypothetical protein lse_0224 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169837|emb|CBH26375.1| cysS [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 471 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 175/476 (36%), Positives = 254/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIKAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S + + E + G RV Sbjct: 115 VTENMDEIIQLINTLIEKGYAYESAGDVYFRTKKFEDYGKLSGQALSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DLIFPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHQDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARES----TKN-------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + +K + L + Sbjct: 346 WLEQLTELKHAFEEDMDDDFNTANAITTFHELAKRANIYLSKEVVSVNVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLEYTQTESLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 461 >gi|312869734|ref|ZP_07729881.1| cysteine--tRNA ligase [Lactobacillus oris PB013-T2-3] gi|311094783|gb|EFQ53080.1| cysteine--tRNA ligase [Lactobacillus oris PB013-T2-3] Length = 471 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/478 (36%), Positives = 258/478 (53%), Gaps = 57/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LKIYNTLTRQKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K Q F+ DTT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAHEQGITVPQ------LADKFIQAFMADTTAVNIEPATKHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +IP +I +Q +I G+AYE++ ++ + +YG S + ID+ ++G Sbjct: 114 ATENIPDIIAFVQTLIEKGYAYESDGDVYYRARKFAHYGQLSGQSIDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG+ DIH GG DL Sbjct: 174 EIGKKEDPMDFALWKAAKPGEISWDSPWGQGRPGWHIECSVMSTKYLGQTLDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A + W+HNGF+ + + KMSKS NFIT++++++T Sbjct: 234 EFPHHENEIAQSEAATG-QPFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHDIIKTVD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 V+R M T YR PI ++ LT+A+ L + Q + G D Sbjct: 291 -----PQVLRFFMATTQYRRPIQYSEDNLTDAKNNLEHIQTAYDNLTYRQQDAATG--DD 343 Query: 350 AVL------------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 A++ +A+ +D+N + I +++L + + + + Sbjct: 344 ALVTQQLADFTARFTTAMDDDINVQNGIAVVYELVKAANTYAQQAAVKQGALQAYKDKLA 403 Query: 391 ----ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I GI++ H N I+ L++ER K K F+ +D IR +L+ +G ILED Sbjct: 404 QLISIFGIKLVA-HDNHIDDEQIKALIEERNQARKNKDFARSDQIRDELKQQGIILED 460 >gi|90411646|ref|ZP_01219656.1| cysteinyl-tRNA synthetase [Photobacterium profundum 3TCK] gi|90327536|gb|EAS43889.1| cysteinyl-tRNA synthetase [Photobacterium profundum 3TCK] Length = 464 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 183/485 (37%), Positives = 264/485 (54%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L ++ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTKQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + KD L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHKDFDALGMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I + + +I G AY A+N +++F+ S YG SR+ +D+ + G RV Sbjct: 114 ATEFIAEIITMCERLIERGFAYVASNGDVMFEVSKFEEYGRLSRQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCATG-SQYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------GHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + + + A ++ Sbjct: 286 AESVRYFLMSGHYRSQLNYSEENLKQARSALERLYTSLRGLDLTAQAEGGEEFVTRFTAS 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLP--IFNAS---------AHILGI------E 395 + +D NT A L + RE K + + I AS A ILG+ Sbjct: 346 MNDDFNTPEAYSVLFDMVREINRLKADETIADNIAQASALGARLRELADILGLLSQDPEA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++ IE L+Q+RL K +++AD R +L + ILED G + T Sbjct: 406 FLQGGAGQDDVAEIESLIQQRLDARAAKDWAAADAARDKLLAMKIILED------GPQGT 459 Query: 456 RWKQK 460 W++K Sbjct: 460 TWRRK 464 >gi|313620930|gb|EFR92103.1| cysteinyl-tRNA synthetase [Listeria innocua FSL S4-378] Length = 471 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 254/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT A W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFAKYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARES----TKN-------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + +K + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLSKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKDIILED 461 >gi|297193591|ref|ZP_06910989.1| cysteinyl-tRNA synthetase 1 [Streptomyces pristinaespiralis ATCC 25486] gi|297151836|gb|EDY62039.2| cysteinyl-tRNA synthetase 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 464 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 260/489 (53%), Gaps = 60/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFAPLVPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIAKSADQGRPWWSIG-------YENERAFNDGYEALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK- 182 RAT H+ +M+ +++ +I GHAYEA+ + FD S P Y + S + ID+ R P++ Sbjct: 114 RATGHVTEMVEMMRGLIERGHAYEADGSVYFDVRSFPEYLALSNQDIDD----LRQPDEG 169 Query: 183 -YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGGLDLI Sbjct: 170 VSGKRDPRDFAMWKSTKPGEPSWETPWGRGRPGWHLECSAMAHKYLGEAFDIHGGGLDLI 229 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+ + A+ W+HN ++ + G KMSKS GN + + E++ ++ Sbjct: 230 FPHHENEIAQAKAYG--DAFASYWVHNAWVTMSGEKMSKSLGNSVLVAEMV-------KN 280 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK-GIIDPAV------ 351 W V+R + HYR I+++ + L EAE ++ + Q K G + PA Sbjct: 281 WRPIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVVEKAGPVAPAAEVPLAF 340 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH-- 400 A+ +DL A+ +H R+ L A +LG++ H Sbjct: 341 AEAMDDDLGVPQALAIIHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDPHWV 400 Query: 401 --------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 L+ + + ++Q+R K +++AD IR QL G ++ED PD Sbjct: 401 GEADRGEDLHGVVDTLVRLVLQQRESARSRKDWATADAIRDQLNQSGLVIED--GPDG-- 456 Query: 453 RMTRWKQKP 461 RW P Sbjct: 457 --PRWTLGP 463 >gi|254387148|ref|ZP_05002419.1| cysteinyl-tRNA synthetase 1 [Streptomyces sp. Mg1] gi|194345964|gb|EDX26930.1| cysteinyl-tRNA synthetase 1 [Streptomyces sp. Mg1] Length = 466 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 172/475 (36%), Positives = 261/475 (54%), Gaps = 58/475 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFTPLVPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F T L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIITKSAEQGRPWWSIG-------YENERAFNDGYTALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRVPE 181 RAT H+ +M+ +++ +I GHAYEA+ + FD S P Y + S +++D Q GT Sbjct: 114 RATGHVTEMVEMMRGLIERGHAYEADGNVYFDVRSFPGYLALSNQELDNLMQPSGT---G 170 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDLI Sbjct: 171 ETGKRDPRDFAMWKSAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGAAFDIHGGGLDLI 230 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+ ++ A W+HN ++ + G KMSKS GN + ++E++ ++ Sbjct: 231 FPHHENEIAQAKAYG--DEFAKYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KA 281 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--GIIDPAV----- 351 W V+R + HYR I+++ + L EAE ++ + Q K G ++PA Sbjct: 282 WRPIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFCQRVVEKAGGPVEPAAEVPLA 341 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEHL 401 + +DL A+ +H R+ L A +LG++ H Sbjct: 342 FAEVMDDDLGVPQALAIVHTTVRQGNSALAADDKDAAIARLSEVRAMLGVLGLDPLDPHW 401 Query: 402 ------NKNISIAIEKLVQERLILLK------MKKFSSADYIRKQLESKGFILED 444 +++ A++ LV RL+L + K +++AD IR QL+ G ++ED Sbjct: 402 AGEADRGEDLHGAVDTLV--RLVLEQRESARGRKDWATADAIRDQLQQSGLVIED 454 >gi|288818363|ref|YP_003432711.1| cysteinyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|288787763|dbj|BAI69510.1| cysteinyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|308751956|gb|ADO45439.1| cysteinyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] Length = 490 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/494 (36%), Positives = 252/494 (51%), Gaps = 70/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++P + +Y CG TVYD +H+G+ R +IVFDV R L + G K Sbjct: 3 LKIYNTLSGKVEEFVPLNPPKVYIYTCGVTVYDDSHVGHGRSLIVFDVFRRYLEHL-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII RA++E N I ++ + D + +PR Sbjct: 62 -VKFVRNFTDVDDKIINRAKEE------NTDFMTIANRYIASYYIDMESIKVKPADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ ++I +I+ ++ G+AYE+ ++ F + P YG S+R +E ++G RV Sbjct: 115 VTEHLQEIIDVIKGLVEKGYAYESGGDVYFSVKAFPEYGKLSKRSTEELEVGARVEPSEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + EP WESPWG GRPGWH EC AM +LGK DIHGGGLDL+FPH Sbjct: 175 KRDPLDFALWKSAKAGEPAWESPWGLGRPGWHTECVAMVFKHLGKTIDIHGGGLDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HNG + + G+KMSKS GN++T+ E+ R + Sbjct: 235 HENEIAQAEALTG-KPFARYWMHNGLVTVGGQKMSKSLGNYVTLREVY-------RRYHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE---------------------ILLSKWPQTSTS 343 V+RL +L THYR P+DF+ +++ EA+ + +K Q Sbjct: 287 DVLRLLVLFTHYRSPLDFSWEKMEEAKRAYERIRHAIEDLDMLKNLQVVEENKISQLYEK 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTK------------NHDL----LPIFNA 387 + A L D NT SA+ + L E K DL + + Sbjct: 347 VKEAEEAFFEDLSEDFNTPSALSHIFALVGELGKVKSRAISERRISRQDLSAYEFAVSSI 406 Query: 388 SAHILGI--------------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADY 430 H+ GI EV + L + I+ LV R K F ADY Sbjct: 407 LRHMRGIFGLFEDIYPEKPVREVVRRELEAGQVLDERLIDILVDVRNQARAEKVFKIADY 466 Query: 431 IRKQLESKGFILED 444 IR +L+ G +LED Sbjct: 467 IRDRLKEVGIVLED 480 >gi|324989717|gb|EGC21660.1| cysteine--tRNA ligase [Streptococcus sanguinis SK353] Length = 447 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 176/468 (37%), Positives = 249/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + F I + MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLRNFVPITEKTVNMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEEGIT-PKE-----VADKYIAAFREDVTALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLVDLELGASGRTDDE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+PI+FT + + +A L T G D A L Sbjct: 288 --GQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVFLDKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + + A A +L GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKEAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|311070741|ref|YP_003975664.1| cysteinyl-tRNA synthetase [Bacillus atrophaeus 1942] gi|310871258|gb|ADP34733.1| cysteinyl-tRNA synthetase [Bacillus atrophaeus 1942] Length = 466 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 265/488 (54%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A + +P I+ + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIRAADELGEDVPT------ISERFIKAYFEDVGALGCKKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I +Q +I G+AYE++ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VTENMDAIIDFVQELIKKGYAYESDGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W++PWG+GRPGWHIECSAM YLG+ DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKDGEISWDAPWGKGRPGWHIECSAMVKKYLGEQIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEAL--TGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIID----- 348 ++R ML HYR PI+++ + RL A L +ST+ D Sbjct: 286 PQLLRFFMLSVHYRHPINYSEELLENTKNAFNRLKTAYSNLLHRLNSSTNLTADDDEWLK 345 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLAR--------ESTKN---HDLLPIFNASAHI 391 A A+ +D NT +AI L +LA+ ++T + + + +F+ A + Sbjct: 346 KIEEHRTAFEEAMDDDFNTANAISILFELAKHANYYLQEDNTADKVINAFIEMFDRIASV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ L + +E+L+++R + + F+ +D IR QL+S ILED Sbjct: 406 LGLTMGEQEL---LDQDVEELIEKRNEARRNRDFALSDQIRDQLKSMNIILED------T 456 Query: 452 QRMTRWKQ 459 + TRWK+ Sbjct: 457 AQGTRWKR 464 >gi|312144267|ref|YP_003995713.1| cysteinyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904918|gb|ADQ15359.1| cysteinyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus'] Length = 484 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 186/498 (37%), Positives = 256/498 (51%), Gaps = 67/498 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K +F+ ++P +RMYVCG TV +++HIG+ R I +DV+ R L Y E Sbjct: 2 LKVYNTLNNKKEKFETVEPGLVRMYVCGLTVQNYSHIGHIRSAINYDVIRRYLEYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TDI++KI++RA +E + + + K F++D A R Sbjct: 61 -VEYISNFTDINEKIVKRAEEEGMTA------AELADKYANAFLEDIRSFNIKAADQYLR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + +I ++I ++ +I G+AYE N ++ F S +YG S R I++ + G R+ Sbjct: 114 VSENIDEIIEMVSKLIEKGYAYEINGDVYFSVDSFEDYGKLSGRSIEDMQAGARIAVNED 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+ E GW+SPWG G PGWHIECSAMS LG FDIHGGG+DLIFPH Sbjct: 174 KKNPLDFALWKKVEAGE-GWDSPWGEGWPGWHIECSAMSMKRLGATFDIHGGGVDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS +K W+HNG +NL G KMSKS GNF T E+L + + A Sbjct: 233 HENEIAQSEAYSG-QKFVKYWLHNGTVNLSGEKMSKSQGNFFTSREVL-------KEFSA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGIIDPAV 351 VIR +L HYR PIDF+ ++L EA+ L + T S++ +D Sbjct: 285 QVIRYFLLTRHYRSPIDFSYEKLEEAQTSLQRLTNTRQELAKVLSGDIESSTGDRLDKDF 344 Query: 352 L-----------SALYNDLNTVSAIQALHKLARE------------STKNHDL----LPI 384 L AL +D NT AI LH E + KN + + Sbjct: 345 LKKTKEIRAEFKKALDDDFNTAEAIGVLHDFVGEINSYINRSEFTLNEKNFSVLEESEEL 404 Query: 385 FNASAHILG----IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 F A ILG +E K + + IE L++ R + ADYIR QL+ G Sbjct: 405 FLELADILGLKFSVEKSKTKNDGFVEPLIELLLELRQKARDKNDWEEADYIRDQLKEIGI 464 Query: 441 ILEDYKNPDNGQRMTRWK 458 + D QR T W+ Sbjct: 465 EVID------TQRGTEWE 476 >gi|229074151|ref|ZP_04207197.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock4-18] gi|228708921|gb|EEL61048.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock4-18] Length = 449 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 250/471 (53%), Gaps = 57/471 (12%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y E V YV N TD+DDK+I Sbjct: 3 LEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYE--VQYVSNFTDVDDKLI 60 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 + A + +P I + + + +D T L C T PR T ++ +I IQ ++ Sbjct: 61 KAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELV 114 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G+AYE+ ++ F T YG S + I + + G R+ K++P DF LWK + Sbjct: 115 NKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEG 174 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + Sbjct: 175 EIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KT 233 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A W+HNG++N++ KMSKS GNFI +++++ + + +IR ML HYR PI Sbjct: 234 FARYWMHNGYINIDNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPI 286 Query: 321 DFTVQRLTEAEILLSKWP--------QTSTSKGIID-------------PAVLSALYNDL 359 +F+ + L L + + +S + D A A+ +D Sbjct: 287 NFSEELLQSTNNGLERIKTAYGNLKHRMESSANLTDHNEKWLAEMEKFQAAFEEAMDDDF 346 Query: 360 NTVSAIQALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIA 408 NT +AI L+ +A + + H + A ILG+E+ KE L + Sbjct: 347 NTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDILGLELAKEEL---LDEE 403 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+Q+R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 404 IEALIQKRIEARKNRDFALSDQIRDDLKERNIILED------TAQGTRWKR 448 >gi|221632709|ref|YP_002521930.1| cysteinyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] gi|221155785|gb|ACM04912.1| cysteinyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] Length = 465 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 249/468 (53%), Gaps = 43/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL R+ +F+ ++P ++RMYVCGPTVY AHIG+A IVFD++ R L Y Sbjct: 3 LRVTNTLTREKEQFETLEPGHVRMYVCGPTVYSDAHIGHAMSAIVFDMIRRYLEY--SGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ N TDIDDKII+RA +P ++ + + ++ +T L T PR Sbjct: 61 RVTFAMNFTDIDDKIIQRAATL--GLPPHE----LAEQLIDAWLDETAALNIKPATIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP +I +++ +++ GHAY + ++ F S P YG S R ++E G RV Sbjct: 115 ATQEIPTIIEMVKGLLVKGHAYTIDGDVYFRVLSFPEYGKLSHRTLEEMLAGARVEIDPR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG GRPGWHIECSAM +LG+ DIHGGG DLIFPH Sbjct: 175 KEHPMDFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMIYRHLGEQIDIHGGGADLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + W+HNG L L G KMSKS GN ITI ELL R+ Sbjct: 235 HENEIAQSEAFTGKKPFVRYWLHNGLLQLGGEKMSKSIGNLITIRELL------ARNGAG 288 Query: 305 PVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTSKGII 347 P RL +L +HYR P+ FT VQ + AE+ + +T Sbjct: 289 P-FRLLVLSSHYRSPLTFTEEAFEAATRGFDRLRLAVQGVEPAELPNRPEHELATLADAT 347 Query: 348 DPAVLSALYNDLNTVSAIQALHKLA----RESTKNHDLLPIFNAS------AHILGIEVC 397 A A+ +D +T A+ L +LA R L I A A +LG Sbjct: 348 RLAFRQAMDDDFDTPVALARLFELARAINRARASGERLEAIRYAQFTLLELATVLGFRFD 407 Query: 398 KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ + + I+ L+ R L +++ ADYIR +L G ++ED Sbjct: 408 EQSTGRQSAEPFIDLLLDVRARLRAQRQWELADYIRGRLNELGVLVED 455 >gi|148381443|ref|YP_001255984.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|153933894|ref|YP_001385818.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|153937063|ref|YP_001389225.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. Hall] gi|187629799|sp|A7FZ91|SYC_CLOB1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629801|sp|A5I7M8|SYC_CLOBH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148290927|emb|CAL85063.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|152929938|gb|ABS35438.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|152932977|gb|ABS38476.1| cysteine--tRNA ligase [Clostridium botulinum A str. Hall] Length = 465 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 261/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISIIFDLIRDVNTNVTIESSKELVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED--TPQG- 459 Query: 452 QRMTRWKQ 459 RWKQ Sbjct: 460 ---IRWKQ 464 >gi|323465875|gb|ADX69562.1| Cysteinyl-tRNA synthetase [Lactobacillus helveticus H10] Length = 474 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 185/503 (36%), Positives = 266/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y G K Sbjct: 1 MKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 113 ATHEIKEIIAFVQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSK 344 + V+R M YR I+++ + L +A +L ++ T S Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 344 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+ A+ +D N +A+ A+ +DLLPI NA+A+ Sbjct: 345 DELAKAIAKTNEKFEVAMDDDFNVQNAVTAI----------YDLLPIVNANANAEKADKK 394 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + GI+ +C + N I++LV++R K K ++++D IR Sbjct: 395 SLKLFKDKLSAWLLVFGIDTEKLCSQSAGSN-DDEIDQLVKKRDEARKKKDWATSDQIRD 453 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 454 QLKEMGITIQD--TP-QGTRWTR 473 >gi|158337192|ref|YP_001518367.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] gi|158307433|gb|ABW29050.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] Length = 504 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 185/513 (36%), Positives = 263/513 (51%), Gaps = 74/513 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F ++ ++ Y CG TVYD+ H+G+AR IV+D++ R L++ + Sbjct: 3 LQIYNTLSRTKEPFTTLEAGKVQFYCCGVTVYDYCHLGHARSYIVWDIVRRYLQWRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDIDDKI++RA + +T Q + D RL LA P+ Sbjct: 62 -VTYVQNYTDIDDKILKRAAE------TGQDWQAVTQTFIQAYEADMARLNILAADAYPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT IP +I LI+++ G AY A ++ F P YG S R +D+ + G RV Sbjct: 115 ATESIPAIINLIRDLETRGVAYAAQGDVYFAVERFPGYGKLSGRLLDQMEAGASGRVEQL 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P + K++P DF LWK + P EP W+SPWG GRPGWHIECSAM + LG DIH GG Sbjct: 175 EPAEQKKRHPLDFALWKATKPGEPSWDSPWGPGRPGWHIECSAMVNQCLGAEIDIHAGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK-- 296 DL+FPHHENEIAQS A + A W+HNGF+N+ G KMSKS GNF TI +LL+T Sbjct: 235 DLVFPHHENEIAQS-EAGLTPRLARYWMHNGFVNVGGEKMSKSLGNFTTIRQLLDTPLPI 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLS-------KWPQT 340 G++ +RL +L YR+PIDFT + A+ +L +W Sbjct: 294 LAGKTLHPMALRLFVLQAQYRKPIDFTDDAIAAAQQSWQTLKEGLLFGYDYGAQLQWSDY 353 Query: 341 S-------TSKGIIDPAVLS-----ALYNDLNTVSAIQALHKLARESTKNHDLLP----- 383 + + I DP V A+ +D N+ S + L +LA++ K ++L Sbjct: 354 TDPDFGNPANMRIPDPNVAVQRFQLAMDDDFNSPSGLVVLFELAKDLRKAGNILSHQGET 413 Query: 384 ------------IFNASAHILGIEVCKEHLNKNISI-------AIEKLVQERLILLKMKK 424 A +LG+E + + AIE L++ER + K Sbjct: 414 STTSEQLREQWQTLVCLAQVLGLEAQPDSDAASTDSEDGLSEQAIEALIEERQAARQAKN 473 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++ +D IR QL+++G L D +TRW Sbjct: 474 YAESDRIRDQLKAEGITL-----IDQAGGVTRW 501 >gi|153813240|ref|ZP_01965908.1| hypothetical protein RUMOBE_03656 [Ruminococcus obeum ATCC 29174] gi|149830653|gb|EDM85744.1| hypothetical protein RUMOBE_03656 [Ruminococcus obeum ATCC 29174] Length = 469 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 252/479 (52%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF ++ +RMYVCGPTVY+ HIGNARPMI+FD + R L Y + Sbjct: 1 MKLFNTMSRRKEEFVPLEEGKVRMYVCGPTVYNLIHIGNARPMIIFDTVRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGVSA------EEISQRYIAECKKDMAGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ +I +AY A+ + F YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIDMIQTLIDKEYAYPVADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLQVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPFWKSPWCDGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS C + + A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 VFPHHENEIAQSECCNGV-PFAKYWMHNAFLNIDNRKMSKSLGNFRTVREI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTST-------- 342 + V+R ML HYR P++F+ ++R+TEA L +T Sbjct: 285 QYDLQVLRFFMLNAHYRSPLNFSADLMESSKNALERITEAAARLRDRQAAATVQEATEDE 344 Query: 343 SKGIIDPAVL-----SALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 K + + A ++ +D NT A+ A+ +L + + N L + Sbjct: 345 KKLMQEEAAFVTKFEESMDDDFNTADALAAVFELVKFANTNVQEGSSKEFAGHTLEVMTK 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LG+ + K+ + + IE L+ ER K K F+ AD IR L KG L+D + Sbjct: 405 LCDVLGLTLEKKE--EILDEEIENLIAERQAARKAKDFARADEIRGLLLDKGIELKDTR 461 >gi|323359183|ref|YP_004225579.1| cysteinyl-tRNA synthetase [Microbacterium testaceum StLB037] gi|323275554|dbj|BAJ75699.1| cysteinyl-tRNA synthetase [Microbacterium testaceum StLB037] Length = 464 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 172/470 (36%), Positives = 247/470 (52%), Gaps = 49/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T + + +F +DPSN+ +YVCGPTV HIG+ R + FD+L R L + YG Sbjct: 3 VRLYDTRAQALRDFAPLDPSNVTVYVCGPTVQSGPHIGHVRAALAFDLLRRWLAHRYGR- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDK++ A P + + +F + + L PT++PR Sbjct: 62 -VTFVRNVTDIDDKVLANATATEPWW-------ALAYRMELEFSRAYAAIGILPPTYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + QM LI +I GHAY A ++ FD S P YG +R+ +D + + Sbjct: 114 ATASVTQMQELIAELIERGHAYAAAGDVYFDVRSWPAYGELTRQSLDAMEPAADADPR-G 172 Query: 185 KKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + EP W SPWG GRPGWHIECSAMS YLG FDIHGGGLDL Sbjct: 173 KRDPRDFALWKGAKDDEPASATWASPWGAGRPGWHIECSAMSRRYLGPEFDIHGGGLDLR 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + A W+HNG + ++G+KMSKS GNF +++L Sbjct: 233 FPHHENEIAQSTAAG--DAFARYWVHNGLVTVDGQKMSKSLGNFTLASDVLAEND----- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGIIDPAVL------ 352 V+R A+ HYR +D + + EA L + + Q DP V+ Sbjct: 286 --PRVVRYALAAAHYRSNLDVSDRAFAEAASALGRIATFRQRVLRAAGADPTVILPGDVP 343 Query: 353 ----SALYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAH--------ILGIEVCKE 399 +A+ +DL+ A+ +H+ R D + +AH ILG++ + Sbjct: 344 ETFAAAMDDDLSVPQALAVVHETVRAGNVALDAGDLDAGVAAHRSVAAMLGILGLDADEP 403 Query: 400 HLNKNIS-IAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFILED 444 + S A++ LVQ +R K +++AD IR + + G LED Sbjct: 404 AVATGSSETALDALVQTMITQRAQARADKDWAAADRIRDAIAAAGITLED 453 >gi|322807828|emb|CBZ05403.1| cysteinyl-tRNA synthetase [Clostridium botulinum H04402 065] Length = 465 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 262/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEEGSTV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T ++LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTARQILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKEIVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 458 -QGVRWKQ 464 >gi|302559960|ref|ZP_07312302.1| cysteinyl-tRNA synthetase [Streptomyces griseoflavus Tu4000] gi|302477578|gb|EFL40671.1| cysteinyl-tRNA synthetase [Streptomyces griseoflavus Tu4000] Length = 466 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 258/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y Sbjct: 3 IRLYDTSARQIRDFTPLQPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFEYR--GL 60 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 61 AVTFIRNVTDIDDKIIAKSAEQGRPWWSIG-------FENERAFTNGYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M+ +++ +I GHAYEA+ + F +S P Y S +++D + E Sbjct: 114 RATGHITEMVEMMRGLIERGHAYEADGNVYFAVASFPEYLELSNQELDNLLQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDLIFP Sbjct: 173 GKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAYG--DEFARYWVHNAWVTMAGEKMSKSLGNSVLVSEMV-------KHWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--GIIDPAV------L 352 V+R + HYR I+++ + L EAE ++ + Q K G+++PA Sbjct: 284 PVVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVVEKAGGVVEPAAEVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEHL-- 401 A+ +D+ A+ +H R+ L A +LG++ H Sbjct: 344 EAMDDDMGVPQALAVVHTTVRQGNSALAADDKEEAVARLAEVRAMLGVLGLDPLDPHWAG 403 Query: 402 ----NKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 +++ A++ LV+ +R K + +AD IR QL G ++ED G + Sbjct: 404 ESDRGQDLHGAVDTLVRMVLDQREAARARKDWPTADAIRDQLNQSGLVIED------GPQ 457 Query: 454 MTRWKQKP 461 RW P Sbjct: 458 GPRWSLGP 465 >gi|289770190|ref|ZP_06529568.1| cysteinyl-tRNA synthetase [Streptomyces lividans TK24] gi|289700389|gb|EFD67818.1| cysteinyl-tRNA synthetase [Streptomyces lividans TK24] Length = 569 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 165/470 (35%), Positives = 250/470 (53%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 106 IRLYDTSARQIRDFAPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 164 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKII +A ++ N I +N + F L CL PT++PR Sbjct: 165 -VTFVRNVTDIDDKIIRKAAEQ------NRPWWSIGYENERAFNDAYAALGCLPPTYEPR 217 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +M+ +++ +I GHAYEA+ + FD S+P Y S S + +DE + + E Sbjct: 218 ATGHITEMVEMMRGLIERGHAYEADGNVYFDVRSLPGYLSLSNQDLDELRQPSEDGET-G 276 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGG+DLIFPH Sbjct: 277 KRDLRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGEEFDIHGGGIDLIFPH 336 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + WP Sbjct: 337 HENEIAQAKGFG--DAFARYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KKWPP 387 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTS--------KGIIDPAVLS 353 V+R + HYR I+++ + L EAE + + Q T + PA Sbjct: 388 VVLRYYLGTPHYRSTIEYSEESLREAESAYGRIEGFVQRVTELAGHAVEPAAEVPPAFAE 447 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-------------------DLLPIFNASAHILGI 394 A+ +DL A+ +H R+ +L + A G Sbjct: 448 AMDDDLGVPQALAIVHTTVRQGNSALAADDKDAAVARLAEVRAMLGVLGLDPLDAQWAGE 507 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + E L + + ++ +R K +++AD IR +L G ++ED Sbjct: 508 QAQGEDLRHVVDSLVRLVLDQREGARARKDWATADAIRDRLGQSGLVIED 557 >gi|126658705|ref|ZP_01729850.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] gi|126619967|gb|EAZ90691.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] Length = 482 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 264/491 (53%), Gaps = 68/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ F + P + MY CG TVYD+ H+G+AR I++D++ R L++ E Sbjct: 3 LKIYNTQTRRLEPFITLLPGRVTMYCCGVTVYDYCHLGHARSYIIWDMVRRYLQWRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDIDDKI+ RA+QE S+ I+ + + + D L + PR Sbjct: 62 -VTYVQNFTDIDDKILRRAQQEGVSM------VDISERFIEAYFTDIRPLNVMDADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 T++I + LIQ ++ +AY + ++ F + YG S R + G RV Sbjct: 115 VTDNISGIQQLIQVLLEKNYAYAVDGDVYFHVEAFGEYGKLSGRSQSMMQAGASGRVAMS 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P HKK+P+DF LWK + P EP W SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPANSHKKHPSDFALWKSAKPEEPAWNSPWGEGRPGWHIECSAMVRGLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A+ + A W+HNG + + G KMSKS GNF TI ELL Sbjct: 235 DLVFPHHENEIAQSEAANG-KPLAKYWVHNGMVTVNGEKMSKSLGNFTTIRELLN----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------ 346 R VIRL +L HYR+P+DFT + ++ A + W + +G+ Sbjct: 289 -RPLDPMVIRLFVLQAHYRKPLDFTEEAISSA---TNGW--QTLQQGLRFGEKYGNRLGW 342 Query: 347 -----IDPAVL----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------- 388 +D AV+ +A+ +D N+ + L +LA+ + +LL + Sbjct: 343 QKNQELDSAVIEQFNAAMDDDFNSPGGLAVLFELAKNLRREGNLLTHEGKTPTDSDNLQR 402 Query: 389 --------AHILGIEV-CKEHL--NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLE 436 A ILG+E K +L +N A I +L+Q+R K+K ++ +D IR+QL+ Sbjct: 403 QWQTLVHLAGILGLEAKPKANLEDTQNFDEAKITRLIQQRNAARKVKDYAQSDRIREQLQ 462 Query: 437 SKGFILEDYKN 447 KG L D+ N Sbjct: 463 QKGITLIDHPN 473 >gi|146319578|ref|YP_001199290.1| cysteinyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|146321776|ref|YP_001201487.1| cysteinyl-tRNA synthetase [Streptococcus suis 98HAH33] gi|253752580|ref|YP_003025721.1| cysteinyl-tRNA synthetase [Streptococcus suis SC84] gi|253754406|ref|YP_003027547.1| cysteinyl-tRNA synthetase [Streptococcus suis P1/7] gi|253756340|ref|YP_003029480.1| cysteinyl-tRNA synthetase [Streptococcus suis BM407] gi|145690384|gb|ABP90890.1| Cysteinyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|145692582|gb|ABP93087.1| Cysteinyl-tRNA synthetase [Streptococcus suis 98HAH33] gi|251816869|emb|CAZ52516.1| cysteinyl-tRNA synthetase [Streptococcus suis SC84] gi|251818804|emb|CAZ56644.1| cysteinyl-tRNA synthetase [Streptococcus suis BM407] gi|251820652|emb|CAR47412.1| cysteinyl-tRNA synthetase [Streptococcus suis P1/7] gi|292559192|gb|ADE32193.1| Cysteinyl-tRNA synthetase [Streptococcus suis GZ1] Length = 447 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/468 (36%), Positives = 256/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+ N TD+DDKII+ A + + ++ K F +D T+L T PR Sbjct: 61 -VTYISNFTDVDDKIIKAANEAGMTTKE------LSDKFIAAFKEDVTKLGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I +Q +I G+AYEA ++ F + NY + + + + ++G RV E Sbjct: 114 VIDYMDEIIDFVQVLIDKGYAYEAAGDVYFRVEKVENYARLANKTLSDLEVGASGRVEGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GQLKEHPFDFALWKTAKSGEVSWGSPWGAGRPGWHIECSVMATEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS C + AN W+HN LN+ KMSKS GNF+T +++LE Sbjct: 234 FPHHTNEIAQSECKTG-QTFANYWMHNAMLNINDEKMSKSLGNFLTAHDMLE-------Q 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R + HYR P+++T + +++AEI L T T + +D + L Sbjct: 286 IDGQVLRFFLATQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVDKSALELHLAAF 345 Query: 353 -SALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I A+ A+ ++ N+D + F + GI +E L+ Sbjct: 346 EAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLAVFGIVFEEEVLDSE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F++AD IR +L ++G L D K +G R TR Sbjct: 402 IEALIAERQAARANRDFATADRIRDELAAQGIKLLDTK---DGVRWTR 446 >gi|300214882|gb|ADJ79298.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Lactobacillus salivarius CECT 5713] Length = 470 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 182/491 (37%), Positives = 264/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKERFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A QE +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKII-KASQE-----MNLSVKEITEKFINAFYEDTSVLNIKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEK 182 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID EQ +RV + Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 183 YHKKN--PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K P DF LWK++ E W+SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKAKQGEISWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQS-EAKTGKKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KEVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE----STKN-------HDLLPIFNAS 388 + ++ + + +D N + I ++++A++ S K ++L+ + Sbjct: 346 VEANFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IEKL+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFNEEK--ELLDDTIEKLIQERNEARKNKNFKRSDEIRDLLKEQGIILED---- 459 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 460 --TAQGTRWKR 468 >gi|182420105|ref|ZP_02951339.1| cysteinyl-tRNA synthetase [Clostridium butyricum 5521] gi|237666779|ref|ZP_04526764.1| cysteine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376142|gb|EDT73729.1| cysteinyl-tRNA synthetase [Clostridium butyricum 5521] gi|237657978|gb|EEP55533.1| cysteine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 466 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 169/488 (34%), Positives = 257/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R+ EF I P ++MYVCGPTVY++ HIGN R I+FD + R L Y G K Sbjct: 1 MRLYNSLTRQKEEFVPIVPGEVKMYVCGPTVYNYFHIGNGRTFIIFDTIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+++N TDIDDK+I +A E ++ + K ++ +D L T PR Sbjct: 60 -VTFIQNFTDIDDKMINKANAEGITV------KELGDKFIDEYYQDADGLQVKRATINPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +++ ++++I G AYE + ++ F T YG + +++ + G R+ Sbjct: 113 ATEYIDEVVEFVKDLIDRGFAYEIDGDVYFSTKKFEEYGKLCGQNLEDLQSGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ LG DIHGGG+DL FPH Sbjct: 173 KKDPMDFAVWKSQKPGEPAWESPWGLGRPGWHIECSCMAKKLLGDTIDIHGGGMDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS +K AN W+H F+N++ +KMSKS NF+T E L + + + Sbjct: 233 HENEIAQSEAVTG-QKFANYWMHAAFVNVDNKKMSKSENNFVTAREAL-------KKYNS 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 VIR ML HYR I+F+ + L A+ + + + + + +I+ Sbjct: 285 DVIRFLMLSGHYRTQINFSAELLDSAKSSVERLYNCVNNLENLINEVNRKEANDSEKAYL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT I + L ++ N + L + Sbjct: 345 KSLDKHREKFIEKMDDDFNTADGISVIFDLIKDINNNVSIDSSSELCEGTLNLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ K++ + I++L+ +R K + F+ AD IR L+++ ILED P Sbjct: 405 LGI--LQKTEEKSLEVEIQELIDKRQEARKNRDFALADKIRDDLKARNIILED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 458 -QGVRWKK 464 >gi|299067219|emb|CBJ38416.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Ralstonia solanacearum CMR15] Length = 465 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 258/469 (55%), Gaps = 43/469 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T++ +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGTLTNRFIAAMHEDADALGVQRPDRE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQHNGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCELLGAHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A+ N W+HNGF+ + KMSKS GNF TI ++L+ Sbjct: 234 DLQFPHHENEIAQSEGANG-STFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVLKV---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA- 350 + V+R +L +HYR ++++ L +A L++ P + ++ + Sbjct: 289 ---YDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAEAQARPDWNEPH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH--LNK 403 A+++D NT A+ L +LA E T++ L A ++G+ V H L Sbjct: 346 GKRFREAMHDDFNTPVAMAVLFELATEINKTRSPALASQLAALGGVMGLLVRDPHAFLQG 405 Query: 404 NISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + A +E ++ R + F+ AD IR L + G +LED Sbjct: 406 GVGAAADGLDTAEVETRIEARRAAKAARDFARADGIRADLLAAGIVLED 454 >gi|145351377|ref|XP_001420057.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580290|gb|ABO98350.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 497 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/329 (46%), Positives = 198/329 (60%), Gaps = 25/329 (7%) Query: 11 LERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGEKCVT 67 + RK F DP+ ++MYVCG TVYD++HIG+AR + FDVLYR L+R Y VT Sbjct: 1 MTRKKEIFTPRDPAGKKVQMYVCGVTVYDYSHIGHARVYVAFDVLYRQLMRLGYD---VT 57 Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127 Y RN TDIDDKII+R+ + + +T K + F +D L CL PT +PRAT Sbjct: 58 YCRNFTDIDDKIIKRSNES------GETCEALTDKFIEAFHEDMAALGCLRPTLEPRATE 111 Query: 128 HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187 + +I I+ +I G+AYE ++ F ++P YG+ S R ++ + G RV KKN Sbjct: 112 CVDDIIAFIERLIAKGNAYETEGDVYFSVDTLPAYGALSGRNQEDNRAGERVAVDGRKKN 171 Query: 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 PADF LWK + P EP W SPWG GRPGWHIECSAM LG DIHGGG DL+FPHHEN Sbjct: 172 PADFALWKTAKPGEPTWTSPWGEGRPGWHIECSAMIEKMLGPTIDIHGGGQDLVFPHHEN 231 Query: 248 EIAQSCCADRIEKTAN------IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 E+AQS A A+ W+HNGF+ ++ KMSKS GNF TI E+L+ Sbjct: 232 ELAQSSAACGCGAHADENPFVRYWVHNGFVKVDSEKMSKSLGNFFTIREVLD-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + V+R +L HYR PI++T + L EA Sbjct: 285 YHPFVLRFMLLGAHYRAPINYTQRALEEA 313 >gi|206972194|ref|ZP_03233141.1| cysteinyl-tRNA synthetase [Bacillus cereus AH1134] gi|206732768|gb|EDZ49943.1| cysteinyl-tRNA synthetase [Bacillus cereus AH1134] Length = 465 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 262/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLS- 353 +IR ML HYR PI+F+ ++R+ A L ++ST + LS Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLSE 346 Query: 354 ----------ALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 IEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ K + + IE+L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELSK---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDLKERNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|30018360|ref|NP_829991.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|218235383|ref|YP_002364939.1| cysteinyl-tRNA synthetase [Bacillus cereus B4264] gi|33301673|sp|Q81J59|SYC_BACCR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735047|sp|B7HJ28|SYC_BACC4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29893900|gb|AAP07192.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|218163340|gb|ACK63332.1| cysteine--tRNA ligase [Bacillus cereus B4264] Length = 465 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/487 (36%), Positives = 259/487 (53%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIID-------- 348 +IR ML HYR PI+F+ + L L + + +S + D Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAE 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 IEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ K + + IE+L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELSK---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDLKERNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|254252008|ref|ZP_04945326.1| Cysteinyl-tRNA synthetase [Burkholderia dolosa AUO158] gi|124894617|gb|EAY68497.1| Cysteinyl-tRNA synthetase [Burkholderia dolosa AUO158] Length = 465 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 180/482 (37%), Positives = 255/482 (52%), Gaps = 69/482 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRRSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEQLESNGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWESKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWSE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHD-----------------------LL 382 +A+ +D NT AI L +LA E + D L Sbjct: 343 PHAQRFAAAMNDDFNTPVAIATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + +A G+ + IE + R+ + K ++ AD IR +L G L Sbjct: 403 QQASGAARDGGLAADE----------IEAKIAARVAAKQAKDYAEADRIRAELLDAGIAL 452 Query: 443 ED 444 ED Sbjct: 453 ED 454 >gi|187776555|ref|ZP_02993028.1| hypothetical protein CLOSPO_00067 [Clostridium sporogenes ATCC 15579] gi|187775214|gb|EDU39016.1| hypothetical protein CLOSPO_00067 [Clostridium sporogenes ATCC 15579] Length = 465 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 264/488 (54%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y G K Sbjct: 1 MKVYNTLTNKKEEFVTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDSIRRYLEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E ++ + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKKANEEGITV------KELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G+R+ Sbjct: 113 ATEFMDEIIRFVSDLIEKGYAYEIDGDVYFSTKRFGDYGKLSGQNLEELQLGSRINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQS-EARTGKQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R+ ML HYR I+F+++ L + L + + + + ++D Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED P Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 458 -QGVRWKQ 464 >gi|157363627|ref|YP_001470394.1| cysteinyl-tRNA synthetase [Thermotoga lettingae TMO] gi|229558795|sp|A8F596|SYC_THELT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157314231|gb|ABV33330.1| cysteinyl-tRNA synthetase [Thermotoga lettingae TMO] Length = 463 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 176/470 (37%), Positives = 243/470 (51%), Gaps = 50/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL + I EF+ +P +RMYVCGPTVY HIGNARPM+VFD L R L Y G + Sbjct: 1 MRFYNTLSKHIEEFKENEPGIVRMYVCGPTVYGLIHIGNARPMVVFDALRRYLEYR-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + V+N TDIDDKII + SI + I+ ++ +D+ L AP P+ Sbjct: 60 VIM-VQNFTDIDDKIINK------SIEFSVDFKDISETFIAEYWRDSMALGVRAPNFSPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +P++I IQN+I HAY + ++ F S P YG S R IDE K G R+ Sbjct: 113 TSDFVPEIINAIQNLIAKNHAYVVDGDVYFSVRSFPRYGELSHRSIDELKAGARIDLNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG GRPGWHIECS MS+ LG DIH GG DLIFPH Sbjct: 173 KRDPLDFALWKSAKPGEPYWKSPWGNGRPGWHIECSVMSTKLLGTTLDIHAGGEDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS + W+HNG + G KMSKS GN + E L KK+G A Sbjct: 233 HENEKAQSEALTG-KTFVKYWLHNGMIKYTGDKMSKSTGNIFLLREAL--KKYG-----A 284 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK-----WPQTSTSKGIIDP 349 +++ L HYR PI+F+ R+ E + P+ + Sbjct: 285 DALKIFFLSKHYRSPIEFSEKALSSAAKAATRINETFLRFESEFSFAIPKQDSWINEKRS 344 Query: 350 AVLSALYNDLNTVSAIQALHKL------ARESTKNHDLLPIFNASAHILGIEVC------ 397 + +L +D NT A+ + +L A + D L I+ H+L E C Sbjct: 345 IFIDSLDDDFNTPRALALIFELVNSLNRAMDDGNERDALKIY----HLLRREFCPVLGLF 400 Query: 398 ---KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N++I ++ L+ R L K++ +D IR +L G L+D Sbjct: 401 DLPERADNRSIEELVKILIDVRAELRAKKQYELSDMIRSKLRKVGIELKD 450 >gi|78357164|ref|YP_388613.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|109894898|sp|Q30ZH8|SYC_DESDG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78219569|gb|ABB38918.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 485 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 183/491 (37%), Positives = 257/491 (52%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK +F +YVCG T YD H+G+AR + FDVL R LR+ + Sbjct: 1 MQLYNTLTRKKEKFIPQREGKASVYVCGITAYDLCHLGHARSSVAFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII+RA + + + + K F +D RL CL +PR Sbjct: 60 -VTFVRNFTDVDDKIIKRAGETGLTS------TEVAEKYMAAFHEDMDRLGCLRADIEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HI +MI L +++I G AY A+ ++ F S +YG S R +D+ + G RV Sbjct: 113 CTQHIGEMIALCEDLISKGKAYSTASGDVYFRVRSFASYGKLSGRDVDDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG GRPGWHIECSAMS +L DIHGGG DL+FP Sbjct: 173 EKEDPLDFALWKSAKPGEPYWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A E A W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 233 HHENEIAQTEAATGKE-FARYWVHNGFVQVNAEKMSKSLGNFSTIRDILQ-------GYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE-----------ILLSKWPQTSTSKGIIDPAVL 352 +R +L HYR PIDFT + EAE ++ ++ +T S + VL Sbjct: 285 PETLRYFLLTKHYRSPIDFTFDGMDEAEKNLRRIYQTLNLVENELQKTKWSAAPLPEEVL 344 Query: 353 S-----------ALYNDLNTVSAIQALHKLA------------RESTKNHDLL----PIF 385 S A+ +DLNT +A+ + L R+S + D L + Sbjct: 345 SEMDETERAWNEAMEDDLNTAAALGHIFGLVRLVNRIIEDKTMRKSAQARDALLRMQSMM 404 Query: 386 NASAHILGI------EVCKEHLN-----KNISIA-IEKLVQERLILLKMKKFSSADYIRK 433 +LG+ E +E + +++ A +E L+ ER K K F +D IR+ Sbjct: 405 ARWGAVLGLFTRQPAEFLREMRDCRAARRDVDTARVETLLLERQEARKAKDFERSDAIRE 464 Query: 434 QLESKGFILED 444 +L G ++D Sbjct: 465 ELARMGVEVQD 475 >gi|15241557|ref|NP_198699.1| tRNA synthetase class I (C) family protein [Arabidopsis thaliana] gi|192807340|gb|ACF06122.1| At5g38830 [Arabidopsis thaliana] gi|332006981|gb|AED94364.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] Length = 511 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 185/504 (36%), Positives = 258/504 (51%), Gaps = 77/504 (15%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K ++K+YNT+ ++ I P I +YVCG T YDF+HIG+AR + FDVLYR L++ Sbjct: 5 KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHL- 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + VT+VRN TD+DDKII+RA + P++ ++++ +++ D L CL PTH Sbjct: 64 -DYDVTFVRNFTDVDDKIIDRANKNGED-PLD-----LSNRFCDEYLVDMGALQCLPPTH 116 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPR + H+ +I +I+ II Y ++ F PNYG S + ++ + G RV Sbjct: 117 QPRVSEHMDNIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAV 176 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF LWK + P EP WESPWG GRPGWHIECSAMS HYL FDIHGGG DL Sbjct: 177 DSRKRNPADFALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPKFDIHGGGADLK 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+C A + N W+HNG + + KM+KS NF TI E+ S Sbjct: 237 FPHHENEIAQTCAACE-DSGVNYWLHNGHVTINNEKMAKSKHNFKTIREITA-------S 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------------------------SK 336 + +R ++ YR P+ FT +L + L K Sbjct: 289 YHPLALRHFLMSAQYRSPLSFTASQLESSSEALYYVYQTLQDLDEGLSPYQDALSEDGGK 348 Query: 337 WPQTSTSKGII---DPAVLSALYNDLNTVSAI------------QALHKLARESTKNH-- 379 QT+ K II S + +DLNT + +L KL + K Sbjct: 349 SEQTAEGKDIIKKLKTEFESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQKKQRMS 408 Query: 380 ---DLLPIFNASAHILGI----------EVCKEHLNKNISIA------IEKLVQERLILL 420 L+ I A+ +L + E+ KE K + A I +L++ER+ Sbjct: 409 MLVSLVEIEKAAREVLDVLGLLTTLSYAEILKEMKLKTLIRAEIGEEGISQLIEERITAR 468 Query: 421 KMKKFSSADYIRKQLESKGFILED 444 K K F+ +D IR++L KG L D Sbjct: 469 KNKDFAKSDEIREKLTRKGIALMD 492 >gi|313625379|gb|EFR95169.1| cysteinyl-tRNA synthetase [Listeria innocua FSL J1-023] Length = 471 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 253/476 (53%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L T PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKATVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT A W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFAKYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI------- 346 VIR ML HYR+PI L +A+ L + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHEDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARES----TKN-------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + +K + L + Sbjct: 346 WLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLSKETVSINVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+++ + +E L++ RL + F+ AD IR L+ K ILED Sbjct: 406 AEVLGLKLENTQTDSLDDSEVEALIEARLQARNERNFARADEIRDILKEKDIILED 461 >gi|321313765|ref|YP_004206052.1| cysteinyl-tRNA synthetase [Bacillus subtilis BSn5] gi|320020039|gb|ADV95025.1| cysteinyl-tRNA synthetase [Bacillus subtilis BSn5] Length = 466 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/488 (35%), Positives = 258/488 (52%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I+ + + + +D + L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------ISERFIKAYFEDVSALGCRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEAL--TGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDP---- 349 ++R ML HYR PI+++ + RL A L +ST+ D Sbjct: 286 PQLLRFFMLSVHYRHPINYSEELLENTKSAFNRLKTAYSNLQHRLNSSTNLTEDDDQWLE 345 Query: 350 -------AVLSALYNDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHI 391 A A+ +D NT +AI L LA+ + K+H + +F+ + Sbjct: 346 KVEEHRKAFEEAMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 406 LGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILED------T 456 Query: 452 QRMTRWKQ 459 + TRWK+ Sbjct: 457 AQGTRWKR 464 >gi|227529487|ref|ZP_03959536.1| cysteinyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540] gi|227350572|gb|EEJ40863.1| cysteinyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540] Length = 472 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 187/499 (37%), Positives = 262/499 (52%), Gaps = 72/499 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ P + MYVCGPTVY++ HIGNAR I FD + R L + G K Sbjct: 2 LTIYNTLTRKQEEFKPQTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFK-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K Q F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAHEQGITVPQ------LADKYIQAFMEDTKAINIEPATMHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +IP++I IQ +I G+AYE + ++ + +YG S + ID+ ++G Sbjct: 114 ATENIPEIIKFIQGLIDKGYAYEKDGDVYYRARKFKDYGQLSGQSIDDLEVGASEHVSDD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIHGGG DL Sbjct: 174 EINKKEDPMDFALWKAAKPGEINWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A +K W+HNGF+ + + KMSKS NFIT+++++ Sbjct: 234 EFPHHENEIAQS-EAKTGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHDII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 + V+R M T YR PI ++ L +A+ L + Q G DP Sbjct: 287 -KQVDPQVLRFFMATTQYRRPIQYSEDNLIDAKNNLEHIQTAFDNLTYRQKDAQDG-ADP 344 Query: 350 AV-----------LSALYNDLNTVSAIQALHKLARES--------------TKNHDLL-- 382 V A+ ND+N + I +++L + + T+ DL+ Sbjct: 345 VVTQKLADFKQSFTEAMDNDINVQNGITVVYELVKFANVYAQQKAVKAAALTEMKDLISE 404 Query: 383 --PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 IF E+ EH I+ L+ ER K K F+ +D IR +L+++G Sbjct: 405 LVSIFGVKLASSDNELNDEH--------IQALIDERNEARKNKDFARSDQIRDELKAQGI 456 Query: 441 ILEDYKNPDNGQRMTRWKQ 459 ILED P G R R K+ Sbjct: 457 ILED--TP-QGTRFKRVKK 472 >gi|332703611|ref|ZP_08423699.1| cysteinyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay] gi|332553760|gb|EGJ50804.1| cysteinyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay] Length = 485 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 249/491 (50%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F+ P + MYVCG T YD HIG+AR +VFD+L R LR E Sbjct: 1 MQLYNTLRRKKESFEPRVPGKVSMYVCGITAYDLCHIGHARSAVVFDILVRYLRSTGLE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN TD+DDKII RA + S I K + F +D +L L +P+ Sbjct: 60 -VTFIRNFTDVDDKIINRANERGVSS------QEIAEKYIKTFHEDMDKLNVLRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP+M+ L +I AY+ + ++ F + YG S R ID+ + G R+ Sbjct: 113 CTEHIPEMLTLTGELIAKDRAYKTLSGDVYFRVRAFEPYGKLSGRDIDDLRAGARITPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWH+ECSAM++ Y+ DIHGGG DLIFP Sbjct: 173 AKEDPLDFALWKSAKPNEPFWESPWGKGRPGWHLECSAMAAKYVDLPLDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A E A W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 233 HHENEIAQTEAATDGE-LARFWVHNGFVQINQEKMSKSLGNFFTIRDILD-------KFM 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGII 347 V+R +L HYR P+DF+ + L EAE L KW + + I Sbjct: 285 PEVLRFFLLGQHYRSPLDFSFESLEEAEKGLRRIYAAMGQMREALQKDKWGKAALPTEIT 344 Query: 348 DP------AVLSALYNDLNTVSAIQALHKLAR--------------ESTKN--HDLLPIF 385 D A A+ +DLNT +A+ + R E +N +L Sbjct: 345 DELSTAEKAWDEAMTDDLNTAAALGHVFTAVRLAGRVMDDKAMRKSEGARNFWQRVLDNL 404 Query: 386 NASAHILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + + G+ C+ + +E L+ +R K F+S+D IR Sbjct: 405 ARWSQVFGVFYSQPQEFLDELRACRARRKGIDTAKVEALLTQRQEARAGKDFASSDAIRD 464 Query: 434 QLESKGFILED 444 +L + G ++D Sbjct: 465 ELAAMGAEVKD 475 >gi|24378673|ref|NP_720628.1| cysteinyl-tRNA synthetase [Streptococcus mutans UA159] gi|30316156|sp|Q8DWA9|SYC_STRMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24376535|gb|AAN57934.1|AE014867_6 putative cysteinyl-tRNA synthetase [Streptococcus mutans UA159] Length = 447 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 173/458 (37%), Positives = 246/458 (53%), Gaps = 34/458 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+TL R + EF I + + MYVCGPTVY++ H+GN R I FD + R Y Sbjct: 2 IKIYDTLTRSLREFVPIHENTVNMYVCGPTVYNYIHVGNGRSAIAFDTIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + ++ K F +D L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAAKAGMTT------KALSDKFIAAFKEDVAALGVKPATENPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV-PE 181 +++ +I +Q ++ G AYE++ ++ F NY + + + ++E ++G RV E Sbjct: 114 VIDYMQDIIDFVQILVDKGFAYESSGDVYFRVRKSDNYAALANKTLEELEIGASGRVDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 SDCKEDPLDFALWKAAKEGEIAWDSPWGAGRPGWHIECSVMATTILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A +K AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKKFANYWMHNGFVNIDNEKMSKSLGNFITVHDALKTM------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+P +FT + + +AEI L T +D AV Sbjct: 287 -DGQVLRFFFATQHYRKPFNFTEKAIRDAEINLKYLKNTYEQPFTATVDEAVFARFLEKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI--EVCKEHLNKNISIAI 409 +A+ D NT + I + +LA+ H + + A IL I V KE + + I Sbjct: 346 QAAMDEDFNTANGITVVFELAKWINSGHYDQTVKDKFAEILQIFGVVFKEEV---LDAEI 402 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 EKL++ER + F+ AD IR L ++G L D K+ Sbjct: 403 EKLIEERQKARAARDFTKADAIRDDLAAQGIKLLDTKD 440 >gi|221068474|ref|ZP_03544579.1| cysteinyl-tRNA synthetase [Comamonas testosteroni KF-1] gi|220713497|gb|EED68865.1| cysteinyl-tRNA synthetase [Comamonas testosteroni KF-1] Length = 461 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 182/465 (39%), Positives = 254/465 (54%), Gaps = 44/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + F ++P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR G K Sbjct: 3 LRIYNTLSRALESFSPLEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRAS-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I +T + +D L PT +PR Sbjct: 62 -VTYVRNITDIDDKIIRRA------VENGETIRSLTDRMIDALHQDADALGIERPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+A N ++ + YG S + +DE G RV Sbjct: 115 ATEYVPQMLGMIAKLQDKGLAYQAGNGDVNYAVRKFAGYGKLSGKSLDELNAGERVAVAD 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + EP W+SP+G GRPGWHIECSAM LG+ FDIHGGG DL Sbjct: 175 GKLDPLDFVLWKSAKADEPADVKWQSPFGEGRPGWHIECSAMGCELLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A W+HNGF+N++ KMSKS GNF TI ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPFAQTWMHNGFINVDNEKMSKSLGNFFTIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A IR ++ +HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 EYDAETIRFFVVRSHYRSPLNYSNVHLDDARGALKR---LYTALDLVAPAEVQVDWSNPY 343 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVCKEHLN 402 +A+ D T A+ L +LA E ++ LL A +L E K Sbjct: 344 AARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSPEVAGLLKTLGACLGLLQAEPQKFLQA 403 Query: 403 KNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + AIE + R K ++ AD IRK+L +G +L+D Sbjct: 404 GSEGVDAAAIEAQIAARAQAKAAKNWAEADRIRKELLEQGIVLKD 448 >gi|306832715|ref|ZP_07465852.1| cysteine--tRNA ligase [Streptococcus bovis ATCC 700338] gi|304425171|gb|EFM28300.1| cysteine--tRNA ligase [Streptococcus bovis ATCC 700338] Length = 448 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 257/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y G K Sbjct: 3 IKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + K F++D +L T PR Sbjct: 62 -VNYISNFTDVDDKIIKGAAE------VGMDTKAFSDKFIAAFMEDVKQLGVKPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I ++ ++ G AYEAN ++ F + NY + + + + ++G RV E Sbjct: 115 VIDYMDEIIDFVKVLVDKGFAYEANGDVYFRVAKSQNYAKLANKTLADLEVGASGRVDGE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 GEIKENPLDFALWKSAKPGEVSWQSPWGEGRPGWHIECSVMATTILGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L + Sbjct: 235 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDML-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPAVL------ 352 + V+R + YR+P++FT + + +A + L T T D A L Sbjct: 286 NVDGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLTEEADAAELAKFKAD 345 Query: 353 --SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I + +A+ N + F + GI +E L+ + Sbjct: 346 FEAAMDDDFNTANGITVIFDMAKWINSGNYNQAVKDTFAKMLAVFGIVFEEEVLDAD--- 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR QL ++G L D K +G R TR Sbjct: 403 -IEALIEKRQAARANKDFATADAIRDQLAAQGIKLLDTK---DGVRWTR 447 >gi|306830478|ref|ZP_07463648.1| cysteine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427503|gb|EFM30605.1| cysteine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 448 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 256/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y G K Sbjct: 3 IKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D +L T PR Sbjct: 62 -VNYISNFTDVDDKIIKGAAEAGMDT------KAFSDKFIAAFMEDVKQLGVKPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I ++ ++ G AYEAN ++ F + NY + + + + ++G RV E Sbjct: 115 VIDYMDEIIDFVKVLVDKGFAYEANGDVYFRVAKSQNYAKLANKTLADLEVGASGRVDGE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 GEIKENPLDFALWKSAKPGEVSWQSPWGEGRPGWHIECSVMATTILGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L + Sbjct: 235 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDML-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPAVL------ 352 + V+R + YR+P++FT + + +A + L T T D A L Sbjct: 286 NVDGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLTEEADAAELAKFKAD 345 Query: 353 --SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I + +A+ N + F + GI +E L+ + Sbjct: 346 FEAAMDDDFNTANGITVIFDMAKWINSGNYNQAVKDTFAKMLAVFGIVFEEEVLDAD--- 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR QL ++G L D K +G R TR Sbjct: 403 -IEALIEKRQAARANKDFATADAIRDQLAAQGIKLLDTK---DGVRWTR 447 >gi|57233567|ref|YP_180814.1| cysteinyl-tRNA synthetase [Dehalococcoides ethenogenes 195] gi|109894896|sp|Q3ZAD5|SYC_DEHE1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57224015|gb|AAW39072.1| cysteinyl-tRNA synthetase [Dehalococcoides ethenogenes 195] Length = 458 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 174/466 (37%), Positives = 244/466 (52%), Gaps = 46/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++ ++MYVCG T HIG+A I FDV+ R L Y G + Sbjct: 1 MKIYNTLSGKLEEFVPLEDGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLSYK-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKII +A + PS + +N F+ L + Sbjct: 60 -VKYIQNFTDIDDKIIAKANAQGIEPST--------LAERNIGVFLDAMAALNITPADYY 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++I ++ +I G+AYEA + + YG S R +++ G R+ Sbjct: 111 PRATQEVPKIIEMVSGLIEKGYAYEAGGSVYLRVQKVEGYGKLSHRTLEQMMAGARIEPG 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIF Sbjct: 171 EEKEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIF 230 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + Sbjct: 231 PHHENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALS-------RY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------IIDPAVLSAL 355 A +R+ +L + YR P+ ++ + L AE + QT+ + +D Sbjct: 284 SADALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARQDNPRLQEINVDVKTYRER 343 Query: 356 Y-----NDLNTVSAIQALHKLARE----------STKNHDLLPIFNASAHILGIE--VCK 398 + ND NT +A+ + L RE ST+ +L F A ILG+ + + Sbjct: 344 FTQYMDNDFNTSAALATIFDLGRELNRIEAEGGKSTQGQEL---FKELAGILGLSLIIAE 400 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + I+ L++ R L K++ AD IR L++ G +LED Sbjct: 401 PTTSADAAPFIDMLIELRKDLRLAKQYQLADKIRTSLDAAGILLED 446 >gi|291616610|ref|YP_003519352.1| CysS [Pantoea ananatis LMG 20103] gi|291151640|gb|ADD76224.1| CysS [Pantoea ananatis LMG 20103] Length = 437 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 176/459 (38%), Positives = 248/459 (54%), Gaps = 48/459 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD HIG+ R + FDV+ R LRY + V YVRNITDIDDKII+RA + Sbjct: 1 MYVCGITVYDLCHIGHGRTFVAFDVVSRYLRYVGFD--VNYVRNITDIDDKIIKRANEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 ++I +T++ + D L L P +PRAT HIP+++ L++ +I GHAY Sbjct: 58 -----GESIETLTNRMIAEMHSDFDALGILPPDREPRATRHIPEIVELVEKLIARGHAYV 112 Query: 148 A-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A N +++FD S +YG+ SR+ +D+ + G RV K+NP DF+LWK S EP W S Sbjct: 113 AENGDVMFDVLSDVDYGALSRQDLDQLQAGARVEVADVKRNPMDFVLWKMSKADEPSWPS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG+GRPGWHIECSAM+ LG FDIHGGG DL+FPHHENEIAQS CA N W+ Sbjct: 173 PWGQGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFPHHENEIAQSTCA-HDGPYVNYWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H+G + ++ KMSKS NF T+ ++L+ + A +R ++ HYR +++ Sbjct: 232 HSGMVMIDREKMSKSLNNFFTVRDVLQ-------HYDAETVRYFLMSGHYRSQLNYGEDN 284 Query: 327 LTEAEILLSKW-------PQTSTSKG--IIDPAVLSALYNDLNTVSAIQALHKLARE--- 374 L +A L + + + + G + A+ +D NT A L +ARE Sbjct: 285 LNQARAALERLYTALRHTDRNAVADGGEAFEARFREAMDDDFNTPEAYSVLFDMAREVNR 344 Query: 375 -----STKNHDLLPIFNASAHILGI-----EV---CKEHLNKNISIAIEKLVQERLILLK 421 T + L A++LGI EV N IE+ V+ R Sbjct: 345 LKGEDMTAANALAAKLREIANVLGILQQEPEVFLQSSAQGNDEEVAEIERWVKARADARA 404 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ AD R +L + G I+ED G + + W++K Sbjct: 405 AKDWAQADVARDKLNALGVIVED------GPQGSSWRRK 437 >gi|256786300|ref|ZP_05524731.1| cysteinyl-tRNA synthetase [Streptomyces lividans TK24] Length = 479 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 165/470 (35%), Positives = 250/470 (53%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 16 IRLYDTSARQIRDFAPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKII +A ++ N I +N + F L CL PT++PR Sbjct: 75 -VTFVRNVTDIDDKIIRKAAEQ------NRPWWSIGYENERAFNDAYAALGCLPPTYEPR 127 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +M+ +++ +I GHAYEA+ + FD S+P Y S S + +DE + + E Sbjct: 128 ATGHITEMVEMMRGLIERGHAYEADGNVYFDVRSLPGYLSLSNQDLDELRQPSEDGET-G 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGG+DLIFPH Sbjct: 187 KRDLRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGEEFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + WP Sbjct: 247 HENEIAQAKGFG--DAFARYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KKWPP 297 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTS--------KGIIDPAVLS 353 V+R + HYR I+++ + L EAE + + Q T + PA Sbjct: 298 VVLRYYLGTPHYRSTIEYSEESLREAESAYGRIEGFVQRVTELAGHAVEPAAEVPPAFAE 357 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-------------------DLLPIFNASAHILGI 394 A+ +DL A+ +H R+ +L + A G Sbjct: 358 AMDDDLGVPQALAIVHTTVRQGNSALAADDKDAAVARLAEVRAMLGVLGLDPLDAQWAGE 417 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + E L + + ++ +R K +++AD IR +L G ++ED Sbjct: 418 QAQGEDLRHVVDSLVRLVLDQREGARARKDWATADAIRDRLGQSGLVIED 467 >gi|259502662|ref|ZP_05745564.1| cysteine-tRNA ligase [Lactobacillus antri DSM 16041] gi|259169307|gb|EEW53802.1| cysteine-tRNA ligase [Lactobacillus antri DSM 16041] Length = 471 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 63/481 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LTIYNTLTRRKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K + F++DTT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAHEQGITVPQ------LADKFIRAFMEDTTAVNIEPATKHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +IP++I +Q +I +G+AYE++ ++ + NYG S + ID+ ++G Sbjct: 114 ATENIPEIIAFVQRLIKNGYAYESDGDVYYRARKFANYGQLSGQSIDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG+ DIH GG DL Sbjct: 174 EIGKKEDPMDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGQTLDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A + W+HNGF+ + + KMSKS NFIT++++++T Sbjct: 234 EFPHHENEIAQSEAATG-QPFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHDIIKTVD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 V+R M T YR PI ++ LT+A+ L + + G +D Sbjct: 291 -----PQVLRFFMATTQYRRPIQYSEDNLTDAQNNLEHIRTAYDNLTYREQDAEVG-VDE 344 Query: 350 AV-----------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK 398 V + + +D+N + I +++L + + + P+ A ++ K Sbjct: 345 VVSQQLADFTARFTAVMDDDINVQNGIAVVYELVK-AANTYAQQPVVKQGA----LQAYK 399 Query: 399 EHLNKNISI---------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + L + +SI I+ L++ER K K F+ +D IR +L+ +G ILE Sbjct: 400 DKLAQLVSIFGIKLVARDNQIDDEQIKALIEERNQARKNKDFARSDQIRDELKQRGIILE 459 Query: 444 D 444 D Sbjct: 460 D 460 >gi|169830402|ref|YP_001716384.1| cysteinyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] gi|229558630|sp|B1I0T1|SYC_DESAP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169637246|gb|ACA58752.1| cysteinyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 478 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 190/501 (37%), Positives = 254/501 (50%), Gaps = 70/501 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL + F DP + +YVCGPT Y+F H+GNAR ++VFD + R + Y Sbjct: 1 MQIFNTLTGRKETFCPRDPGRVSIYVCGPTTYNFIHLGNARALVVFDTIRRY--FLYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII R+R+E + +K ++ D L P+ Sbjct: 59 RVLYIQNFTDVDDKIINRSREEGIDP------QTLAAKYVDEYFVDADALNVRRADVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HIP++I LI II G AY A ++ F YG S+R +D+ G RV Sbjct: 113 VSDHIPEIIALITMIIDRGLAYVAGGDVYFAVRKFGGYGRLSKRSLDDLLAGARVEVGEQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWGRGRPGWHIECSAM+ YLG FDIHGGG DLIFPH Sbjct: 173 KRDPLDFALWKAAKPGEPWWESPWGRGRPGWHIECSAMALKYLGTGFDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A E A WIHNGF+ + KMSKS GN + EL R +P Sbjct: 233 HENEIAQSEGATG-EPFARYWIHNGFITIREEKMSKSLGNVFLVRELT-------RLYPP 284 Query: 305 PVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSK-----WPQTSTSKGIIDP 349 +RL +L HYR P+D+ V RL LL + P G Sbjct: 285 EALRLFLLSNHYRNPLDYDPEAMEASVRAVNRLKTCLGLLRESLDRPAPDGDGGGGNRLE 344 Query: 350 AVL--------SALYNDLNTVSAIQALHKLARE-STKNHD-----------LLPIFNASA 389 AVL +A+ +D NT A + L E +T H L +F+A Sbjct: 345 AVLEVLQGRFEAAMDDDFNTALAQAVMFDLTHEVNTYLHQNDRPSRGALQKALDLFDAFN 404 Query: 390 HILGIEVCKEHLNK------NISIAIEKLVQERLILLKM-----KKFSSADYIRKQLESK 438 +LGI EH + +S + + + + LI L+ K F++AD IR L + Sbjct: 405 RVLGI--FPEHKGRIVLEAGAVSGDLSQGLLDLLIALRQDARRNKDFATADRIRDGLRAL 462 Query: 439 GFILEDYKNPDNGQRMTRWKQ 459 G +LED P RWK+ Sbjct: 463 GILLED--TPQG----VRWKK 477 >gi|90962221|ref|YP_536137.1| cysteinyl-tRNA synthetase [Lactobacillus salivarius UCC118] gi|123269889|sp|Q1WSS5|SYC_LACS1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|90821415|gb|ABE00054.1| Cysteinyl-tRNA synthetase [Lactobacillus salivarius UCC118] Length = 470 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 263/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + +F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKEKFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A QE +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKII-KASQE-----MNLSVKEITEKFINAFYEDTSALNVKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEK 182 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID EQ +RV + Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 183 YHKKN--PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K P DF LWK+ E W SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKVKQGEISWNSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQS-EAKTGKKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KKVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE----STKN-------HDLLPIFNAS 388 + ++ + + +D N + I ++++A++ S K ++L+ + Sbjct: 346 VEVNFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IE+L+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFSEEK--ELLDDTIEQLIQERNEARKNKNFKRSDEIRDLLKEQGIILED---- 459 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 460 --TAQGTRWKR 468 >gi|55820186|ref|YP_138628.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55822074|ref|YP_140515.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] gi|61216120|sp|Q5M1W6|SYC_STRT1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216121|sp|Q5M6F6|SYC_STRT2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|55736171|gb|AAV59813.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55738059|gb|AAV61700.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] Length = 447 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 170/470 (36%), Positives = 259/470 (55%), Gaps = 43/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENTVNMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------VGISTKELSDKFITAFMEDTAQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 N++ ++I + +I G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSILIDKGFAYVSEGDVYFRVTKSNNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDRKEDPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV----- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDP 349 V+R + YR+PI+FT + + +AE+ L T + + +D Sbjct: 287 --DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTEEVSQAELQAYLD- 343 Query: 350 AVLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNIS 406 A +A+ +D NT + + L +A+ ++ N+D + F + GI +E L+++ Sbjct: 344 AFQAAMDDDFNTANGVTVLFDMAKWINSGNYDETVKDAFEKILQVFGIVFEEETLDED-- 401 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 402 --IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|67809679|gb|AAY81974.1| cysteinyl-tRNA synthetase [Wolbachia pipientis] Length = 404 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 174/418 (41%), Positives = 245/418 (58%), Gaps = 36/418 (8%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIIT 100 IGNAR ++V+DVL++LL++ YG+ VTYVRNITDIDDKII A ++ N I IT Sbjct: 1 IGNARSVVVYDVLFQLLKFCYGK--VTYVRNITDIDDKIINAASEK------NSNIESIT 52 Query: 101 SKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP 160 + + F D + C PT++P+AT ++ +I LI++++ GHAYE++ + F+ S Sbjct: 53 TYYIKAFHDDMESINCKKPTYEPKATENVDYIIKLIEHLLQSGHAYESDKHVYFNIESYH 112 Query: 161 NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPME----PGWESPWGRGRPGWH 216 YG+ S +K DE G+RV +KK+P DF+LWK + ++ W SPWG GRPGWH Sbjct: 113 EYGALSGKKTDELVPGSRVEVNENKKHPGDFVLWKPANDIDYKLSSYWNSPWGEGRPGWH 172 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECSAMS YLGK FDIHGGG+DL FPHHENEIAQS A A W+HNGFL + Sbjct: 173 IECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQSKSAFAGSMFAKYWMHNGFLTVNEE 232 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 KMSKS N + + +LL++ G VIR A+L THYR+P D+T +++A+ L+K Sbjct: 233 KMSKSLFNIVKVRDLLDSGIKG------EVIRYALLKTHYRKPPDWTENVISDAQETLNK 286 Query: 337 WPQTS---------TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD------L 381 + + S S I + AL NDLN A+ LH++A + K + L Sbjct: 287 FYRLSRGLDTINIDESNAEISKDFIDALKNDLNIPEALAILHEMAAKINKMSNESEKLKL 346 Query: 382 LPIFNASAHILGI--EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLE 436 F SA +G+ +E +S IE+L+ R + K +++AD IR QL+ Sbjct: 347 TESFVKSARFIGLLESSYQEWFTAGVSHQEIERLIDLRRAAKQNKDYNTADKIRDQLK 404 >gi|332530126|ref|ZP_08406075.1| cysteinyl-tRNA synthetase [Hylemonella gracilis ATCC 19624] gi|332040396|gb|EGI76773.1| cysteinyl-tRNA synthetase [Hylemonella gracilis ATCC 19624] Length = 475 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 184/477 (38%), Positives = 256/477 (53%), Gaps = 52/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + F +++P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ G + Sbjct: 3 LRIYNTLSRALEPFVSLEPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKAS-GWR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + +D L PTH+PR Sbjct: 62 -VTYVRNITDIDDKIIQRALKN------GETIRGLTDRMIAALHQDADALGIQRPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-------ANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 A +++PQM+ LI + G AY A+ ++ + P YG S + +DE + G Sbjct: 115 AMDYVPQMLDLIGQLERQGLAYRVPGQAGGASGDVNYSVRKFPGYGKLSGKSLDELRAGE 174 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 RV K++P DF+LWK + EP W+SP+G GRPGWHIECSAMS LG+ FDIH Sbjct: 175 RVAVLDGKQDPLDFVLWKSAKADEPAEAQWQSPYGAGRPGWHIECSAMSCALLGESFDIH 234 Query: 235 GGGLDLIFPHHENEIAQS-----CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 GGG DL FPHHENEIAQS A+ + A W+HNGF+ ++ KMSKS GNF TI Sbjct: 235 GGGADLQFPHHENEIAQSEGAKIGAANEGQPMARYWMHNGFVRVDNEKMSKSLGNFFTIR 294 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------ 337 E+L+ + A +R +L HYR P+++ L +A L + Sbjct: 295 EVLQ-------KYDAQTVRFFILRAHYRSPLNYGDAHLDDARSALKRLYTALQATPPAPM 347 Query: 338 -PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI 394 PQT +A+ D T A+ L LA E T + L + A LG+ Sbjct: 348 APQTVDWTEGHAARFKAAMDEDFGTPEAVAVLFDLATEVNKTGSARLAALLKALGGCLGL 407 Query: 395 --EVCKEHLNKNISI-----AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L S AI+ L+ +R K F+ AD IR++L ++G +L+D Sbjct: 408 LQEDPVAFLQSGASAALDASAIDSLIAQRAAAKAAKNFAEADRIRQELLAQGIVLKD 464 >gi|218895225|ref|YP_002443636.1| cysteinyl-tRNA synthetase [Bacillus cereus G9842] gi|226735046|sp|B7ISZ9|SYC_BACC2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218541053|gb|ACK93447.1| cysteinyl-tRNA synthetase [Bacillus cereus G9842] Length = 465 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 264/487 (54%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTS------KGIID 348 +IR ML HYR PI+F+ ++R+ A L ++ST K +++ Sbjct: 287 QLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLVE 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNASA-------HIL 392 A A+ +D NT +AI L+ +A + + H + A IL Sbjct: 347 IEKFQTAFEEAMNDDFNTANAITELYNVANYANQYLLEEHTSKVVIEAYVKQLETLFDIL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+E+ + + + IE+L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 407 GLELTQ---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDLKGRNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|313124319|ref|YP_004034578.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280882|gb|ADQ61601.1| Cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 474 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 180/496 (36%), Positives = 269/496 (54%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARAEGTTVPE------LAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSKENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 P + +A+ +D N +A+ A+++ A + + L +F Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + N IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGNDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 P + TRW ++ Sbjct: 465 --TP----QGTRWSRE 474 >gi|229552880|ref|ZP_04441605.1| cysteine--tRNA ligase [Lactobacillus rhamnosus LMS2-1] gi|258540510|ref|YP_003175009.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] gi|229313749|gb|EEN79722.1| cysteine--tRNA ligase [Lactobacillus rhamnosus LMS2-1] gi|257152186|emb|CAR91158.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] Length = 468 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 182/492 (36%), Positives = 267/492 (54%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A + + P++ A I + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIITAAHKTGEA-PLDLAQRFIDA-----FMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 A+ IP ++ +Q++I G+AY + ++ + +YG S + +DE + G E Sbjct: 114 ASQMIPDIVDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQE 173 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK +P DF LWK + P E W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELDKKEDPIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A ++ W+HNGF+ + + +KMSKS GNFIT++++L+T Sbjct: 234 EFPHHENEIAQS-EAKTGKQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTVD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI--- 346 V+R M T YR PI ++ L A L++ + + + + G+ Sbjct: 291 -----PQVLRFFMAGTQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAADGVDAQ 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKN---HDLLPIFNAS 388 + ++A+ +D+N + + L LA+ ++ K +DLL ++A Sbjct: 346 ITAELKTLKDRFIAAMDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ N+ I+ LV+ R K F+ +D IR QL ++G ILED Sbjct: 406 LQIFGVVFTDP---TNLDADIDALVKARDAARAAKDFAKSDEIRDQLAAQGIILEDTP-- 460 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 461 ----QGTRWRRK 468 >gi|294637579|ref|ZP_06715861.1| cysteine--tRNA ligase [Edwardsiella tarda ATCC 23685] gi|291089250|gb|EFE21811.1| cysteine--tRNA ligase [Edwardsiella tarda ATCC 23685] Length = 363 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 154/378 (40%), Positives = 220/378 (58%), Gaps = 26/378 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + ++ +T + + +D L P +PR Sbjct: 60 TLKYVRNVTDVDDKIIKRALEN------KESCEQLTERMLAEMHRDFDALNIARPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY A+N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALVEQLIARGHAYVASNGDVMFAVDTDPDYGLLSRQDLEQLQAGARVEVAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSTCA-HDGAYVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAV--------LSA 354 A +R ++ HYR ++++ + L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDATAQPAADEAFEGRFRAA 345 Query: 355 LYNDLNTVSAIQALHKLA 372 + +D NT A L +A Sbjct: 346 MDDDFNTPEAYSVLFDMA 363 >gi|315221317|ref|ZP_07863240.1| cysteinyl-tRNA synthetase [Streptococcus anginosus F0211] gi|315189676|gb|EFU23368.1| cysteinyl-tRNA synthetase [Streptococcus anginosus F0211] Length = 447 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 172/460 (37%), Positives = 246/460 (53%), Gaps = 38/460 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ H+GNAR FD + R Y E Sbjct: 2 IKIYDTMTRSLRKFVPLEEGKVKMYVCGPTVYNYIHVGNARSTAAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + P + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEEGIT-PQE-----VADKYIAAFREDVTALGVQPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ +I +Q ++ G AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVDYMTDIIDFVQVLVDKGFAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAVKPGEIFWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKTID---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYN- 357 V+R +YR+PI+FT + + +AE+ L T G +D L A + Sbjct: 288 ---GQVLRFFFATQYYRKPINFTEKAVHDAEVNLKYLKNTYEQPFTGTVDLTELQAFLDK 344 Query: 358 -------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISI 407 D N + I + +LA+ H + A A +L GI E L+ + Sbjct: 345 FTAAMDEDFNAANGITVVFELAKWINSGHYSQEVKTAFAELLQVFGIVFTAEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE L+++R K F++AD IR +L +KG L D K+ Sbjct: 402 -IEALIEQRQAARVAKDFATADKIRDELAAKGIKLLDTKD 440 >gi|187631664|sp|A4W7I4|SYC_ENT38 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 263/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVSRYLRFL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 60 TLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F + P YG SR+ +++ + G RV Sbjct: 114 ATHHIHEIIEITEKLIERGHAYVASNGDVMFSVPTDPGYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKTSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHGGEYV-NYWMHSGMVMVDREKMSKSLDNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYIAVRGTDKSVAPAGGEAFEARFIDV 345 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILG-IEVCKEHL---- 401 + +D NT A L +ARE K D+ ++H +LG +E E Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKVEDVSAANALASHLRKLAAVLGLLEQDPETFLQSG 405 Query: 402 --NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N +A IE L+ RL + K +++AD R +L G +LED G + T W+ Sbjct: 406 AQNDGDEVAKIEALITARLEARQAKDWAAADAARNRLTEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|313635089|gb|EFS01438.1| cysteinyl-tRNA synthetase [Listeria seeligeri FSL N1-067] Length = 471 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 174/475 (36%), Positives = 253/475 (53%), Gaps = 53/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIKAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S + + E + G RV Sbjct: 115 VTENMDEIIQLINTLIEKGYAYESAGDVYFRTKKFEDYGKLSGQALSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DLIFPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HE+EIAQS A KT AN W+HN FLN++G KMSKS GNFIT++++L+ Sbjct: 235 HEDEIAQSEAA--TGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------D 285 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGI------- 346 VIR ML HYR+PI ++RL A + QT + + Sbjct: 286 PNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHQDE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARES----TKN-------HDLLPIFNAS 388 + A + +D NT +AI H+LA+ + +K + L + Sbjct: 346 WLEQLTELKHAFEEDMDDDFNTANAITTFHELAKRANIYLSKEVVSVNVLREFLSMMRLF 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A +LG+++ +E L++ERL + F+ AD IR L+ K ILE Sbjct: 406 AEVLGLKLEYTQTESLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILE 460 >gi|107028742|ref|YP_625837.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] gi|116690099|ref|YP_835722.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia HI2424] gi|254247826|ref|ZP_04941147.1| Cysteinyl-tRNA synthetase, class Ia [Burkholderia cenocepacia PC184] gi|123370109|sp|Q1BHP1|SYC_BURCA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200131|sp|A0K8K2|SYC_BURCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|105897906|gb|ABF80864.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] gi|116648188|gb|ABK08829.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia HI2424] gi|124872602|gb|EAY64318.1| Cysteinyl-tRNA synthetase, class Ia [Burkholderia cenocepacia PC184] Length = 465 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D T L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDETALGIQRPDVE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + +YG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQAADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ EP W S +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKRAKADEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDTLALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQASGAAQAGGLAADEIEAQIAARVAAKQAKDYAEADRIRAELLEAGIALED 454 >gi|260102407|ref|ZP_05752644.1| cysteine-tRNA ligase [Lactobacillus helveticus DSM 20075] gi|260083775|gb|EEW67895.1| cysteine-tRNA ligase [Lactobacillus helveticus DSM 20075] Length = 476 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 184/503 (36%), Positives = 266/503 (52%), Gaps = 82/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y G K Sbjct: 4 VKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYK-GYK 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEAHAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 116 ATHEIKEIIAFVQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSK 344 + V+R M YR I+++ + L +A +L ++ T S Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 347 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+ A+ +D N +A+ A+ +DLLPI NA+A+ Sbjct: 348 DELAKAIAKTNEKFEVAMDDDFNVQNALTAI----------YDLLPIVNANANAEKADKK 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + GI+ +C + + N I++LV++R K K ++++D IR Sbjct: 398 SLKLFKDKLSAWLLVFGIDTEKLCSQSADSNDE--IDQLVKKRDEARKKKDWATSDQIRD 455 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 456 QLKEMGITIQD--TP-QGTRWTR 475 >gi|145570618|gb|ABP79724.1| cysteinyl-tRNA synthetase [Pseudomonas stutzeri A1501] Length = 436 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 178/444 (40%), Positives = 245/444 (55%), Gaps = 40/444 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYDF HIG+AR M+ FDV+ R LR+ + VTYVRNITDIDDKII RA + Sbjct: 1 MYVCGMTVYDFCHIGHARVMVAFDVVTRWLRHRGYD--VTYVRNITDIDDKIIRRASEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + + +D TRL L P +PRAT+HI M +IQ +I G AY Sbjct: 58 -----GEPFQALVERMIAAMHEDETRLNVLRPDVEPRATDHIAGMHTMIQTLIDKGFAYA 112 Query: 148 -ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 N ++ + YG SRRKI++ K+G R+ K++P DF+LWK + P EP W+S Sbjct: 113 PGNGDVYYRVGKFVGYGKLSRRKIEDLKIGARIEVDEAKEDPLDFVLWKGAKPGEPSWDS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECS MS+ LG+ FDIHGGG DL+FPHHENEIAQS A + AN W+ Sbjct: 173 PWGPGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFPHHENEIAQSEAATG-KLYANAWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H G + ++G KMSKS GNF TI E+LE + V+R ++ +HYR PI+++ Sbjct: 232 HAGAVRVDGEKMSKSLGNFFTIREVLE-------KYHPEVVRYLLVSSHYRSPINYSEDS 284 Query: 327 LTEAEILLSKW-------PQTSTSKGIIDPA-VLSALYNDLNTVSAIQALHKLARESTKN 378 L EA+ L ++ P+ + G A +A+ +D N+ A L ++ RE + Sbjct: 285 LREAKSALERFYNGLKGLPEAQPAGGDEFVARFAAAMDDDFNSPEACAVLFEMIREVNRL 344 Query: 379 HDLLPIFNASAH--------ILGIEVCKEH-------LNKNISIAIEKLVQERLILLKMK 423 + A+ +LG+ + K + +E L+ RL K Sbjct: 345 READLAAAAALAARLKVLAGVLGVLQLEPDAFLQAGAAGKVDAAEVEALIAARLAARAEK 404 Query: 424 KFSSADYIRKQLESKGFILEDYKN 447 + +D IR QL + G +LED K Sbjct: 405 NWGESDRIRDQLTAMGVVLEDGKG 428 >gi|291482466|dbj|BAI83541.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195] Length = 466 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 172/488 (35%), Positives = 257/488 (52%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I+ + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------ISERFIKAYFEDVGALGCRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEAL--TGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDP---- 349 ++R ML HYR PI+++ + RL A L +ST+ D Sbjct: 286 PQLLRFFMLSVHYRHPINYSEELLENTKSAFNRLKTAYSNLQHRLNSSTNLTEDDDQWLE 345 Query: 350 -------AVLSALYNDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHI 391 A A+ +D NT +AI L LA+ + K+H + +F+ + Sbjct: 346 KVEEHRKAFEEAMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 406 LGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILED------T 456 Query: 452 QRMTRWKQ 459 + TRWK+ Sbjct: 457 AQGTRWKR 464 >gi|300811849|ref|ZP_07092315.1| cysteine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497168|gb|EFK32224.1| cysteine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 474 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 180/496 (36%), Positives = 268/496 (54%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARAEGTTVPE------LAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ IP +I IQ +I G+AYE + ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYETDGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKVADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L+T Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDILKTVD- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 V+R M YR ID++ + L +A +L ++ T ++G+ D Sbjct: 291 ------PQVLRFFMASVQYRSQIDYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 P + +A+ +D N +A+ A+++ A + + L +F Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 P + TRW ++ Sbjct: 465 --TP----QGTRWSRE 474 >gi|257057469|ref|YP_003135301.1| cysteinyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] gi|256587341|gb|ACU98474.1| cysteinyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] Length = 459 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 249/469 (53%), Gaps = 46/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R++ EF+ MY+CG TV HIG+ R + +DVL R L + Sbjct: 3 LQLFDTAARQVREFRPARSGTASMYICGATVQGVPHIGHVRGALNYDVLRRWL--VHSGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V VRN+TDIDDKI+ +A + P + + + + F L CL P+ PR Sbjct: 61 DVLMVRNVTDIDDKILTKAAE--AGRPWWE----WAATHERAFEDAYAALGCLPPSVTPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QMI LIQ +I GHAY A + F S+ +YG S +++DE + G E Sbjct: 115 ATGHITQMIELIQRLIDSGHAYAAEGNVYFSVSTFDSYGQLSGQRLDEVQQGETQSEG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W +PWGRGRPGWH+ECSAM++ YLG FDIHGGG+DL+FPH Sbjct: 173 KRDPRDFTLWKASKPGEPSWPTPWGRGRPGWHLECSAMATTYLGSEFDIHGGGVDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS A + A W+HN ++ L G KMSKS GN + I E+L R + A Sbjct: 233 HENERAQSMAAG--DGFARYWLHNAWVTLAGEKMSKSLGNVVAIPEML-------RRYRA 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSK---GIIDPAVLSA 354 +R ++ HYR I+++ L+E+ E L + Q+ST + G + +A Sbjct: 284 VELRAYLIQPHYRSTIEYSDAALSESAQGYRRIEQFLRR-VQSSTGEVQVGRVPAEFAAA 342 Query: 355 LYNDLNTVSAIQALHKLARES---------TKNHDLLPIFNASAHILGIEVCKEHLNKN- 404 L +DL T A LH R+ T+ L A +LGI+ E + Sbjct: 343 LDDDLGTPQAFAVLHNTVRDGNAALDSAKETEARQLAETVRAMVDVLGIDPLSEQWAEQG 402 Query: 405 ------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ ++ +++ER + F++AD IR +L G +ED N Sbjct: 403 GAEAEVLARLVDAMLEERQQARANRDFATADAIRDRLIEAGIAVEDTPN 451 >gi|116627043|ref|YP_819662.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMD-9] gi|116100320|gb|ABJ65466.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMD-9] gi|312277506|gb|ADQ62163.1| Cysteinyl-tRNA synthetase, putative [Streptococcus thermophilus ND03] Length = 447 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 170/470 (36%), Positives = 259/470 (55%), Gaps = 43/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENTVNMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------VGISTKELSDKFITAFMEDTAQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 N++ ++I + +I G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSILIDKGFAYVSEGDVYFRVTKSNNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDRKEDPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV----- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDP 349 V+R + YR+PI+FT + + +AE+ L T + + +D Sbjct: 287 --DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTEEVSQAELQAYLD- 343 Query: 350 AVLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNKNIS 406 A +A+ +D NT + + L +A+ ++ N+D + F + GI +E L+++ Sbjct: 344 AFQAAMDDDFNTANGVTVLFDMAKWINSGNYDETVKNAFEKILQVFGIVFEEETLDED-- 401 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 402 --IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|260424802|ref|ZP_05733345.2| cysteine--tRNA ligase [Dialister invisus DSM 15470] gi|260403249|gb|EEW96796.1| cysteine--tRNA ligase [Dialister invisus DSM 15470] Length = 488 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 177/502 (35%), Positives = 260/502 (51%), Gaps = 68/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IK+YNTL + T F+ + P +++YVCG T Y+ HIGNARP + +DV+ R L++ G Sbjct: 9 EEIKVYNTLTGEKTVFRPLVPGEVKIYVCGVTPYNHPHIGNARPAVTWDVICRYLKHI-G 67 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V +V+N TD+DDKII +A E I+ + + + + Sbjct: 68 YK-VEFVQNFTDVDDKIINKANAEGSDW------KTISDRYIDAYFQVMDAMHVRRADVY 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++H+ +I ++Q +I GHAY N++ +D S+ +YG+ S RKID+ G R+ Sbjct: 121 PRVSDHMQDIIDMVQGLIDKGHAYVLGNDVYYDISTFEHYGALSGRKIDDMLAGARIEVN 180 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP WESPWG+GRPGWHIECSAMS HYLGK FD HGGG DLIF Sbjct: 181 EGKRNPGDFALWKGAKPGEPFWESPWGKGRPGWHIECSAMSVHYLGKTFDFHGGGSDLIF 240 Query: 243 PHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS C K N W+HNGF+ + KMSKS NF ++L + Sbjct: 241 PHHENEIAQSEGCTG---CKFVNYWLHNGFITINSEKMSKSLNNFFLAKDVL-------K 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------QTSTSK 344 + +R +L YR P+D++ RL EAE + + +T S+ Sbjct: 291 EYSGDALRYFLLSVQYRNPLDYSRDRLDEAEKNMERLSGVIRRLKELAAKEGAEKTDASR 350 Query: 345 GIIDPAVLS------ALYNDLNTVSAIQALHKLARE------------STKNHDLLPIFN 386 + A S A+ +D NT A A+ LA+ S + + + Sbjct: 351 SLEKAAEESLKAFHEAMDDDFNTGLATGAMFDLAKAINIYGTAVDGGLSVDHEAVEKAYT 410 Query: 387 ASAHILGIEVCKEHL--------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 A I+ I E + +K+ + ++ ++ R K K + AD IR +L++ Sbjct: 411 ALKTIMDILGILEEVWEKTDSPDDKSYNDLMDIILAVRQTARKEKMYKIADEIRDRLDAA 470 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 G ++ED RWK++ Sbjct: 471 GIVIEDTPTG------ARWKRR 486 >gi|325685668|gb|EGD27750.1| cysteine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 474 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 180/496 (36%), Positives = 269/496 (54%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARAEGTTVPE------LAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSKENLEQAANILGRFKNTLEGINYRLADETEGLPD 344 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 P + +A+ +D N +A+ A+++ A + + L +F Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + N IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGNDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 P + TRW ++ Sbjct: 465 --TP----QGTRWSRE 474 >gi|18312206|ref|NP_558873.1| cysteinyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2] gi|21264010|sp|Q8ZYD8|SYC_PYRAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|18159644|gb|AAL63055.1| cysteinyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2] Length = 474 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 185/484 (38%), Positives = 261/484 (53%), Gaps = 55/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R++ EF P R YVCG T YD H+G+ R + FD+ R L E Sbjct: 3 VRIYNTATRQVEEFVTYVPKLARGYVCGITPYDHVHVGHGRVYVFFDMFRRYLEARGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTH 121 V V N TDIDDKII +AR+E +DA + + +F + + +L + P H Sbjct: 62 -VRLVINFTDIDDKIINKAREEFG----HDAYKRWKEVPERYIAEFFEMSNKL-FIKPAH 115 Query: 122 Q-PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 PR T ++ +M+ I ++ G+AY A + + F+ +PNYG SR+KI+E G RV Sbjct: 116 AYPRVTENVNEMVAWISTLVEKGYAYVAPDGSVYFEVGKVPNYGVLSRQKIEELIAGARV 175 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + KKNP DF LWK TP EP W SPW GRPGWH+EC MS+ YLG FD HGGG D Sbjct: 176 EPEPGKKNPLDFALWKSWTPGEPWWNSPWCPGRPGWHLECVVMSTKYLGAPFDFHGGGAD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIA + ++ A WIH G+L + G KMSKS GN IT+ E+L K+ G Sbjct: 236 LIFPHHENEIAIAKAYYGLDNFAKYWIHVGYLTVRGEKMSKSLGNVITLREVL--SKYSG 293 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTS------------ 343 + +RLA M+HYR+P++F+ + L +AE L + + + S + Sbjct: 294 EA-----LRLAYAMSHYRKPMEFSFELLDQAEEMVKTLYTAYDELSQAVADASDEDKEKL 348 Query: 344 -KGIIDPAVLSALYNDLNTVSAIQALHKLARE--STKNH-----------DLLPIFNASA 389 G + +AL +D +T A Q L+ LAR ST H D+L + A Sbjct: 349 EYGKYIESFYAALEDDFSTPQAAQQLYGLARYIISTVLHRIDKASRQTAIDVLTQYVKMA 408 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 ILG+ + + + K + I+ +V+ R L + K + ADY+R++L G L D+ Sbjct: 409 DILGV-LERREIPKEVEEVIKAVVEARARLRREKMYQLADYLRERLAGIGVELHDF---- 463 Query: 450 NGQR 453 GQR Sbjct: 464 -GQR 466 >gi|170733433|ref|YP_001765380.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] gi|229558621|sp|B1JUK8|SYC_BURCC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169816675|gb|ACA91258.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] Length = 465 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D T L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDETALGIQRPDVE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + +YG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQAADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ EP W S +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKRAKEDEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDTLALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D NT A+ L +LA E + D + L Sbjct: 343 PHGQRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQASGAAQAGGLAADEIEAQIAARVAAKQAKDYAEADRIRAELLEAGIALED 454 >gi|303249127|ref|ZP_07335367.1| cysteinyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] gi|302489452|gb|EFL49399.1| cysteinyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] Length = 485 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 178/491 (36%), Positives = 249/491 (50%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ R F + P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQLFNTMARAKEPFSPLHPCKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII++A E + + I + F +D +L L +PR Sbjct: 60 -VTFVRNFTDVDDKIIKKAASEGATC------AGIAERYIAAFYEDMDKLGILRADAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ M + + +I GHAY + ++ F S +YG S R I++ + G RV Sbjct: 113 ATEYVAAMADMAERLIETGHAYRTPSGDVYFRVRSFADYGKLSGRDIEDMRAGARVAPGD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK S P EP WESP+G GRPGWH+ECS MS LG FDIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKASKPGEPVWESPFGPGRPGWHLECSVMSEKLLGIPFDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E W+HNGF+ + KMSKS GNFITI ++ + R P Sbjct: 233 HHENEIAQSEAATGKE-FCRFWVHNGFVRINTEKMSKSLGNFITIRDIYK------RYLP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----------------ILLSKWPQTSTSKGII 347 V+R ++ +HYR P+D++ Q L EAE + +KW T I Sbjct: 286 -EVLRFFLVASHYRSPLDYSDQALDEAEKGIKRLYAAKGQMEQALTRAKWSGTKLPAEIA 344 Query: 348 DP------AVLSALYNDLNTVSAI----------------QALHKLARESTKNHDLLPIF 385 + ++A+ +D NT A+ + L K A + +L F Sbjct: 345 EELARHEQGFIAAMDDDCNTAQALGHVFGAVRLAGRLLEDKTLAKSAETADILRRILADF 404 Query: 386 NASAHILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + ILG+ + C+ ++ LV ER K K F +D IR Sbjct: 405 ETWSGILGVCGRDSREFLDALKACRAARLGIDPTRVDALVAERQDARKAKDFPRSDAIRD 464 Query: 434 QLESKGFILED 444 +L + G + D Sbjct: 465 ELATLGVTVMD 475 >gi|146310641|ref|YP_001175715.1| cysteinyl-tRNA synthetase [Enterobacter sp. 638] gi|145317517|gb|ABP59664.1| cysteinyl-tRNA synthetase [Enterobacter sp. 638] Length = 465 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 182/482 (37%), Positives = 263/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 6 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVSRYLRFL--GY 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 64 TLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F + P YG SR+ +++ + G RV Sbjct: 118 ATHHIHEIIEITEKLIERGHAYVASNGDVMFSVPTDPGYGQLSRQDLEQLQAGARVDVVD 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 178 VKRNPMDFVLWKTSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 238 HHENEIAQSTCAHGGEYV-NYWMHSGMVMVDREKMSKSLDNFFTVRDVL-------KYYD 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLSA 354 A +R ++ HYR ++++ + L +A L + + + + PA + Sbjct: 290 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYIAVRGTDKSVAPAGGEAFEARFIDV 349 Query: 355 LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAH------ILG-IEVCKEHL---- 401 + +D NT A L +ARE K D+ ++H +LG +E E Sbjct: 350 MNDDFNTPEAYSVLFDMAREINRLKVEDVSAANALASHLRKLAAVLGLLEQDPETFLQSG 409 Query: 402 --NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N +A IE L+ RL + K +++AD R +L G +LED G + T W+ Sbjct: 410 AQNDGDEVAKIEALITARLEARQAKDWAAADAARNRLTEMGIVLED------GPQGTIWR 463 Query: 459 QK 460 +K Sbjct: 464 RK 465 >gi|290959417|ref|YP_003490599.1| cysteine--tRNA ligase [Streptomyces scabiei 87.22] gi|260648943|emb|CBG72057.1| cysteine--tRNA ligase [Streptomyces scabiei 87.22] Length = 467 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 256/489 (52%), Gaps = 57/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFAPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERAR-QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKII +A Q P I +N + F L CL PT++P Sbjct: 62 -VTFVRNVTDIDDKIIVKAADQGRPWWSIG-------YENERAFNDGYGVLGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+ +M+ +++ +I GHAYEA+ + FD S P Y S +++D + E Sbjct: 114 RATGHVTEMVEMMRGLIERGHAYEADGNVYFDVRSFPGYLQLSNQELDNLLQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDLIFP Sbjct: 173 GKRDPRDFAMWKSAKPGEPTWETPWGRGRPGWHLECSAMAHKYLGTAFDIHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAFG--DDFATYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KHWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--GIIDPAV------L 352 V+R + HYR I+++ L EAE ++ + Q K G+++PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEAALREAESAFARIEGFVQRVIEKAGGVVEPAAEVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKN-------------------HDLLPIFNASAHILG 393 A+ +DL A+ +H R+ +L + AH G Sbjct: 344 EAMDDDLGVPQALAVVHTTVRQGNSALAADDKEEAVARLAEVRAMLGVLGLDPLDAHWAG 403 Query: 394 IEVCK-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E + E L+ + + ++Q+R K +++AD IR QL G +ED PD Sbjct: 404 AEGDRGEDLHGVVDTLVGLVLQQREAARARKDWATADAIRDQLNQSGLAIED--GPDG-- 459 Query: 453 RMTRWKQKP 461 RW P Sbjct: 460 --PRWTLGP 466 >gi|191639246|ref|YP_001988412.1| cysteinyl-tRNA synthetase [Lactobacillus casei BL23] gi|239630171|ref|ZP_04673202.1| cysteinyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|187631657|sp|Q035S0|SYC_LACC3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558712|sp|B3WA35|SYC_LACCB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|190713548|emb|CAQ67554.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Lactobacillus casei BL23] gi|239527783|gb|EEQ66784.1| cysteinyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327383326|gb|AEA54802.1| Cysteinyl-tRNA synthetase [Lactobacillus casei LC2W] gi|327386509|gb|AEA57983.1| Cysteinyl-tRNA synthetase [Lactobacillus casei BD-II] Length = 468 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 184/492 (37%), Positives = 262/492 (53%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ RK F + P IRMYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 LTLYNTMSRKKETFTPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A + + P++ A I + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIINAAHKTGEA-PLDLAQRFIDA-----FMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 A+ IP +I +Q++I +AY + ++ + +YG S + +DE + G Sbjct: 114 ASQMIPDIIEFVQDLIDKEYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E WESPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELAKKEDPIDFALWKAAKPGEISWESPWGKGRPGWHIECSVMSTKLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A ++ W+HNGF+ + + KMSKS GNFIT++++ +T Sbjct: 234 EFPHHENEIAQS-EAKTDKQFVRYWMHNGFVTIGEDDEKMSKSLGNFITVHDIRKTVD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 V+R M T YR PI ++ L A L++ PQ Sbjct: 291 -----PQVLRFFMAGTQYRMPIRYSETNLKNAANSLNRLKIARENLTYRRRGAETGVDPQ 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKN---HDLLPIFNAS 388 + + ++A+ +D+N + + L LA+ E+ K+ +DLL ++A Sbjct: 346 ITKQLQTLKDRFVTAMDDDINVQNGLTVLFDLAKLLNEYANEETVKSESINDLLNEYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ + K++ I+ LV+ R K F+ +D IR QL ++G ILED P Sbjct: 406 LQIFGVVFADQ---KSLDADIDALVKARDAARAAKDFAKSDQIRDQLAAQGIILED--TP 460 Query: 449 DNGQRMTRWKQK 460 TRW+++ Sbjct: 461 QG----TRWRRQ 468 >gi|161506926|ref|YP_001576880.1| cysteinyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] gi|172048174|sp|A8YTD3|SYC_LACH4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160347915|gb|ABX26589.1| Cysteinyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] Length = 476 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 185/503 (36%), Positives = 265/503 (52%), Gaps = 82/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y G K Sbjct: 4 VKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYK-GYK 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEAHAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I IQ +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 116 ATHEIKEIIAFIQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSK 344 + V+R M YR I+++ + L +A +L ++ T S Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 347 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+ A+ +D N +A+ A+ +DLLPI NA+A+ Sbjct: 348 DELAKAIAKTNEKFEVAMDDDFNVQNALTAI----------YDLLPIVNANANAEKADKK 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + GI+ +C + N I++LV++R K K ++++D IR Sbjct: 398 SLKLFKDKLSAWLLVFGIDTEKLCSQSAGSNDE--IDQLVKKRDEARKKKDWATSDQIRD 455 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 456 QLKEMGITIQD--TP-QGTRWTR 475 >gi|288904445|ref|YP_003429666.1| cysteinyl-tRNA synthetase [Streptococcus gallolyticus UCN34] gi|325977441|ref|YP_004287157.1| cysteinyl-tRNA synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731170|emb|CBI12718.1| cysteinyl-tRNA synthetase [Streptococcus gallolyticus UCN34] gi|325177369|emb|CBZ47413.1| cysS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 448 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 256/469 (54%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y G K Sbjct: 3 IKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D +L T PR Sbjct: 62 -VNYISNFTDVDDKIIKGAAEAGMDT------KAFSDKFIAAFMEDVKQLGVKPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-E 181 +++ ++I ++ ++ G AYEAN ++ F + NY + + + + ++G RV E Sbjct: 115 VIDYMDEIIDFVKVLVDKGFAYEANGDVYFRVAKSQNYAKLANKTLADLEVGASGRVDGE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 GEIKENPLDFALWKSAHPGEVSWQSPWGEGRPGWHIECSVMATTILGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L + Sbjct: 235 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDML-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPAVL------ 352 + V+R + YR+P++FT + + +A + L T T D A L Sbjct: 286 NVDGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLTEEADAAELAKFKAD 345 Query: 353 --SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I + +A+ N + F + GI +E L+ + Sbjct: 346 FEAAMDDDFNTANGITVIFDMAKWINSGNYNQAVKDTFAKMLAVFGIVFEEEVLDAD--- 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR QL ++G L D K +G R TR Sbjct: 403 -IEALIEKRQAARANKDFATADAIRDQLAAQGIKLLDTK---DGVRWTR 447 >gi|199598530|ref|ZP_03211947.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus HN001] gi|199590572|gb|EDY98661.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus HN001] Length = 468 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 183/492 (37%), Positives = 263/492 (53%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A + + P++ A I + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIITAAHKTGEA-PLDLAQRFIDA-----FMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 A+ IP +I +Q++I G+AY + ++ + +YG S + +DE + G E Sbjct: 114 ASQMIPDIIDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQE 173 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK +P DF LWK + P E W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELDKKEDPIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A ++ W+HNGF+ + + +KMSKS GNFIT++++L+T Sbjct: 234 EFPHHENEIAQS-EAKTGKQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTVD-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 V+R M T YR PI ++ L A L++ Q Sbjct: 291 -----PQVLRFFMAGTQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAVAGVDAQ 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKN---HDLLPIFNAS 388 + + ++A+ +D+N + + L LA+ ++ K +DLL ++A Sbjct: 346 ITAELKTLKDRFIAAMDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ N+ I+ LV+ R K F+ +D IR QL ++G ILED Sbjct: 406 LQIFGVVFTDP---TNLDADIDALVKARDAARAAKDFAKSDEIRDQLAAQGIILEDTP-- 460 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 461 ----QGTRWRRK 468 >gi|254517452|ref|ZP_05129508.1| cysteinyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] gi|226911201|gb|EEH96402.1| cysteinyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] Length = 466 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 170/488 (34%), Positives = 255/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L RK EF + P I+MYVCGPTVY++ HIGN R I+FD + R Y G K Sbjct: 1 MRVYNSLTRKKEEFIPLTPGEIKMYVCGPTVYNYFHIGNGRTFIIFDTIRRYFEYR-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ S I + ++ KD L + + PR Sbjct: 60 -VKFVQNFTDIDDKMIKKANEEGTTV------SDIGDRYIDEYYKDADGLNIMRASINPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I ++ +I G+AYE + ++ F T +YG + +++ + G R+ Sbjct: 113 ATEYIQDIIEFVKGLIEKGYAYEVDGDVYFRTKKFESYGKLIGQNLEDLQAGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK P EP WESPWG GRPGWHIECS M+ LG DIH GG+DL FPH Sbjct: 173 KEDPMDFAVWKAQKPGEPAWESPWGMGRPGWHIECSCMAKKILGDTIDIHAGGMDLAFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+H FLN+ +KMSKS NF+T ++L + + A Sbjct: 233 HENEIAQSEALTG-KPFARYWLHGAFLNINNQKMSKSLNNFLTARDIL-------KQYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA------------- 350 V+R ML HYR ++F+ L A+ + + + S + +ID Sbjct: 285 DVVRFLMLSGHYRVQLNFSDDLLESAKASVERLYNAVSNLENLIDEVKKESMDDKEKAYL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI A+ L ++ N + L + + Sbjct: 345 EFLDVYRQRYIEKMDDDFNTADAITAIFDLIKDINTNVSIESSRELCEAALSLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI + ++ IE+L+ ER K + F+ AD IR L+++ +LED P Sbjct: 405 LGI--LQNSTKGSLEEEIERLIAERQQARKDRNFALADKIRNDLKARNIVLED--TP--- 457 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 458 -QGVRWKK 464 >gi|119510000|ref|ZP_01629141.1| cysteinyl-tRNA synthetase [Nodularia spumigena CCY9414] gi|119465324|gb|EAW46220.1| cysteinyl-tRNA synthetase [Nodularia spumigena CCY9414] Length = 477 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 251/494 (50%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F ++P ++MY CG TVYD+ H+G+AR IV+DV+ R L++ E Sbjct: 3 LTLYNTLTRRQEAFATVEPGKVKMYYCGVTVYDYCHLGHARACIVWDVVRRYLQFIGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI++R+R+EH S+ + + + +D RL PR Sbjct: 62 -VRYIQNFTDIDDKILKRSREEHSSM------EAVAERYINAYFEDMGRLGIKPADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LI + G AY A+ ++ + YG S RK+++ + G RV Sbjct: 115 ATHTMNGIQRLIHELENKGFAYPADGDVYYAVRQFNEYGKLSGRKLEDMQAGASERVQVE 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF LWK + P EP WES WG GRPGWHIECSAM LG DIH GG Sbjct: 175 DPEYQKKKDPFDFALWKAAKPGEPAWESSWGAGRPGWHIECSAMVRDRLGDTIDIHAGGA 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + A W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 235 DLIFPHHENEIAQSEAVTG-KPLATYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSKG----- 345 R +RL +LM YR+PIDFT + A E LL + G Sbjct: 289 -RGVEPMAVRLFVLMAQYRKPIDFTDDAIAAATNGWHTLKEGLLFGYEYGGVGSGEKLTS 347 Query: 346 -IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PIFNA 387 I A+ +D N + L +LA+E + +++ Sbjct: 348 EIHIQRFQEAVNDDFNFPGGLAVLFELAKELRRQGNIIVHQGKTETSPEELQKQWQTLVI 407 Query: 388 SAHILGIEVCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A + G+ E N I IE L+Q+R K K F+ +D IR QL+++G L Sbjct: 408 LAEVFGLVAQPEAENAIIEGLSDAEIENLIQQRQAARKSKNFAESDRIRDQLQAEGITLI 467 Query: 444 DYKNPDNGQRMTRW 457 D ++ TRW Sbjct: 468 DSRDG------TRW 475 >gi|228477775|ref|ZP_04062403.1| cysteinyl-tRNA synthetase [Streptococcus salivarius SK126] gi|228250467|gb|EEK09681.1| cysteinyl-tRNA synthetase [Streptococcus salivarius SK126] Length = 447 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 171/473 (36%), Positives = 260/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + S ++ K F++DT +L T Sbjct: 57 CGYTVNYISNFTDVDDKIIKAANEAGIST------KELSDKFIAAFMEDTGQLGIKPATQ 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-- 179 PR N++ ++I + ++ G AY + ++ F + NY + + +++ ++G Sbjct: 111 NPRVINYMDEIITFVSTLVDKGFAYVSEGDVYFRVAKSNNYAKLANKTLEDLEIGASGRT 170 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DAETERKENPLDFALWKAAKEGEVSWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLQTV-- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 V+R + YR+PI+FT + + +AE+ L K+ + + S + + Sbjct: 287 -----DGQVLRFFLATQQYRKPINFTEKAIHDAEVNL-KYLKNTHSLPLTEQVNQAELQT 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARE-STKNHD--LLPIFNASAHILGIEVCKEHLNK 403 A A+ +D NT + + L +A+ ++ N+D + F + GI +E L++ Sbjct: 341 YLDAFQEAMDDDFNTANGVTVLFDMAKWINSGNYDQTVKDAFEKMLQVFGIVFEEEVLDE 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 401 D----IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|188590724|ref|YP_001919652.1| cysteinyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|251778988|ref|ZP_04821908.1| cysteine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|229558624|sp|B2UY90|SYC_CLOBA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188501005|gb|ACD54141.1| cysteinyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|243083303|gb|EES49193.1| cysteine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 470 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 167/479 (34%), Positives = 256/479 (53%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK EF I P ++MYVCGPTVY+F HIGN R IVFD + R L Y + Sbjct: 1 MRIFNTLTRKKEEFIPITPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I K +++ +D +L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKKANEEGTTV------KEIGDKYIKEYYEDADKLQIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 AT +I +I + +I G+AYE ++ F+T +YG S + I++ +MG T Sbjct: 113 ATEYIEDIIDFVAQLIEKGYAYEVEGDVYFNTKKFNDYGKLSGQSIEDLQMGASNRTSSV 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF +WK P EP W+ PWG GRPGWHIECS M+ LG DIH GG+DL Sbjct: 173 ADERKKDPMDFAIWKSQKPGEPAWKCPWGMGRPGWHIECSCMAKKILGDTIDIHAGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE+AQS ++ AN W+H+ ++N+ +KMSKS NF T ++L + Sbjct: 233 TFPHHENEVAQSEALTGVQ-FANYWMHSAYVNINNQKMSKSLNNFFTARDIL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------- 350 + + V+R M+ HYR I+F+ L A+ + + + + +ID Sbjct: 285 EYDSDVVRFFMMSAHYRLQINFSKDLLDSAKASVERLYNAIGNLENLIDEVSRENMNEEE 344 Query: 351 -------------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL--GIE 395 + + +D NT A+ L +L +++ N ++ N+S ++ ++ Sbjct: 345 VRYLNSLNKYREKYIEKMDDDFNTADALTVLFELTKDTNTNINV----NSSKELVNKALD 400 Query: 396 VCKE------HLNK----NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +E L K ++ IE L+Q+R K K F+ +D IR L+ +G +LED Sbjct: 401 LIRELGAPLGLLQKITKGSLEDEIESLIQQRQDARKNKDFALSDKIRDDLKDRGIVLED 459 >gi|319654847|ref|ZP_08008922.1| cysteinyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] gi|317393410|gb|EFV74173.1| cysteinyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] Length = 467 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 174/476 (36%), Positives = 252/476 (52%), Gaps = 57/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ +F I+ ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IQIYNTLTRQKEDFIPIEEGKVKMYVCGPTVYNYIHIGNARPPIVFDTVRRYLEFRGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A + +P I + + +D + L C PR Sbjct: 62 -VQYVSNFTDVDDKLIRVANELGTDVPS------IAERFINAYFEDVSALGCRKADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T I +I IQ +I G AYE+ ++ + T YG S + IDE ++G R+ Sbjct: 115 VTESIDIIIEFIQTLIDKGFAYESEGDVYYHTRKFDEYGKLSHQSIDELRVGARIAVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDSLDFVLWKAAKEGEIAWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ ++++++ Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYINIDNEKMSKSLGNFVLVHDIIQKH-------DP 286 Query: 305 PVIRLAMLMTHYREPIDFT--------------------VQRLTEAEILLS----KWPQT 340 V+R ML HYR PI+++ +Q EA + L+ +W Sbjct: 287 QVLRFFMLSVHYRHPINYSDELLENTRTGLERIKTSYHNLQHRKEASVNLTDNNQEWLDK 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----KNHDLLPI------FNASA 389 TS + + + +D NT +A+ L +L++ + KN + I F Sbjct: 347 ITS---LHEQFIQDMDDDFNTANAVSILFELSKLANYYLMEKNTAVEVIDAFTKEFETLF 403 Query: 390 HILGIEVCKEHLNKN-ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + E N + + IE+L+++R K + F AD IR QL+ ILED Sbjct: 404 DVLGLSL--EETNADLLDEEIEQLIEQRQQARKERNFELADKIRDQLKEMNIILED 457 >gi|291166310|gb|EFE28356.1| cysteine--tRNA ligase [Filifactor alocis ATCC 35896] Length = 466 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 180/487 (36%), Positives = 261/487 (53%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL R+ EF I+ + ++MY CGPTVY++ HIGNARP I+FD L L Y E Sbjct: 1 MRFYNTLTRRKDEFVPIEKNKVKMYSCGPTVYNYFHIGNARPFIIFDTLRNYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII RA +E S P+ + K +++ D L + PR Sbjct: 60 -VTFVQNFTDVDDKIINRANEEGIS-PLE-----VADKYIKEYFVDADGLGIRRASVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T I +I I+ +I GHAYE + ++ +DT S YG SR+ ++E G R+ Sbjct: 113 VTECIEDIIEFIEELIQKGHAYEIDGDVYYDTKSFDGYGKLSRQNMEELNAGARIDVDDR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P+DF LWK+ E GW SPWG GRPGWHIECS MS YLG DIH GG DLIFPH Sbjct: 173 KKSPSDFALWKKKKEGEIGWISPWGEGRPGWHIECSVMSRKYLGDTIDIHSGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A+ W+HNG++N+ +KMSKS NF T+ E+ E Sbjct: 233 HENEIAQSEGRSGKE-FAHYWLHNGYININNQKMSKSLNNFFTVREISEVIDL------- 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA------ 350 ++R +L YR P++F+ L A+ + + T ++G+I Sbjct: 285 EIVRFFLLSAQYRNPVNFSQDLLDAAKSGMERLYNTKHKVEFLLEQAQGMIKEDEKEFVS 344 Query: 351 --------VLSALYNDLNTVSAIQALHKLAR--------ESTKNH--DLLPIFNASAHIL 392 + A+ +DLNT I A+ +L++ +S+K + + + IF ++L Sbjct: 345 KLPSYRELFIEAMDDDLNTADGISAIFELSKFINTTVSEKSSKEYLQECMNIFCELTNVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 I + K+ + I +L+++R + K K F+ AD IR QL G + D + Sbjct: 405 NI-IQKKKSDGFDEDKINELIEQRSLAKKEKNFAEADRIRGQLHDMGVEVLDTR------ 457 Query: 453 RMTRWKQ 459 + T WK+ Sbjct: 458 QGTTWKK 464 >gi|319779351|ref|YP_004130264.1| Cysteinyl-tRNA synthetase [Taylorella equigenitalis MCE9] gi|317109375|gb|ADU92121.1| Cysteinyl-tRNA synthetase [Taylorella equigenitalis MCE9] Length = 486 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 186/484 (38%), Positives = 263/484 (54%), Gaps = 53/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY++L R+ E + I+ + IRMYVCG TVYDF H+G+AR ++ FDV+ R LRY + Sbjct: 1 MQIYDSLTRQKQELKPIETNKIRMYVCGITVYDFCHLGHARMLVSFDVICRWLRYKGYQ- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TDIDDKII++A + +N ++ IT T D L L P H+PR Sbjct: 60 -VNYVRNVTDIDDKIIKKA------VALNKRLNEITQFYTDAMHADERALGVLPPDHEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M+ +I + G AY++ +N++ F +YG S R ID+ + G RV Sbjct: 113 ATDHISGMLEIINKLESKGLAYKSKDNDVNFSVRKFDSYGKLSGRSIDDLRSGERVAISE 172 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + EP W SP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 173 AKLDPLDFVLWKAAKDSEPEDSKWTSPYGLGRPGWHIECSAMSKELLGLPLDIHGGGPDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-------E 293 FPHHENEIAQS A IE A IW+H G L ++ KMSKS GNF TI + + + Sbjct: 233 KFPHHENEIAQSEGAYDIE-LARIWMHCGPLMVDNDKMSKSLGNFKTIRQTVAVGEVSDD 291 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---TSTSKGIIDPA 350 + ++ A ++R ++ HYR +FT L +A+ + + Q T +K I+ Sbjct: 292 SAEYEFNEREAEMLRFFIVRNHYRSAQNFTPDNLVDAQSAIDRLYQTFGTFDAKDFIESP 351 Query: 351 V----------LSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGI---- 394 + ++A+ +D NT A+ L +L E TK+ +L + A +LG+ Sbjct: 352 IDWSNPYAVKFMNAMDDDFNTSLAVSVLFELNTEVNKTKSKELFKLLVALGKLLGLFRVN 411 Query: 395 ---------EVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 K ++ + IA IE L++ER K F AD IR L++ G Sbjct: 412 PRLYFKIPTRYSKTQIDGSGGIAISNNDIEGLIEERKAAKANKDFKKADEIRDYLKATGI 471 Query: 441 ILED 444 LED Sbjct: 472 ELED 475 >gi|290579657|ref|YP_003484049.1| putative cysteinyl-tRNA synthetase [Streptococcus mutans NN2025] gi|254996556|dbj|BAH87157.1| putative cysteinyl-tRNA synthetase [Streptococcus mutans NN2025] Length = 447 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 245/458 (53%), Gaps = 34/458 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+TL R + EF I + + MYVCGPTVY++ H+GN R I FD + R Y Sbjct: 2 IKIYDTLTRSLREFVPIHENTVNMYVCGPTVYNYIHVGNGRSAIAFDTIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + ++ K F +D L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAAKAGMTT------KALSDKFIAAFKEDVAALGVKPATENPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV-PE 181 +++ +I +Q ++ G AYE++ ++ F NY + + + ++E ++G RV E Sbjct: 114 VIDYMQDIIDFVQVLVDKGFAYESSGDVYFRVRKSDNYAALANKTLEELEIGASGRVDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 SDCKEDPLDFALWKAAKEGEIAWDSPWGAGRPGWHIECSVMATTILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A +K AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQS-EAKTGKKFANYWMHNGFVNIDNEKMSKSLGNFITVHDALKTM------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL------- 352 V+R HYR+P +FT + + +AEI L T +D A Sbjct: 287 -DGQVLRFFFATQHYRKPFNFTEKAIRDAEINLKYLKNTYEQPFTATVDEATFIRFLEKF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI--EVCKEHLNKNISIAI 409 +A+ D NT + I + +LA+ H + + A IL I V KE + + I Sbjct: 346 QAAMDEDFNTANGITVVFELAKWINSGHYNQTVKDKFAEILQIFGVVFKEEV---LDAEI 402 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 EKL++ER + F+ AD IR L ++G L D K+ Sbjct: 403 EKLIEERQKARAARDFTKADAIRDDLAAQGIKLLDTKD 440 >gi|328462973|gb|EGF34781.1| cysteinyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463] Length = 473 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 184/503 (36%), Positives = 266/503 (52%), Gaps = 82/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y G K Sbjct: 1 MKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEAHAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 113 ATHEIKEIIAFVQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSK 344 + V+R M YR I+++ + L +A +L ++ T S Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 344 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+ A+ +D N +A+ A+ +DLLPI NA+A+ Sbjct: 345 DELAKAIAKTNEKFEVAMDDDFNVQNALTAI----------YDLLPIVNANANAEKADKK 394 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + GI+ +C + + N I++LV++R K K ++++D IR Sbjct: 395 SLKLFKDKLSAWLLVFGIDTEKLCSQSADSNDE--IDQLVKKRDEARKKKDWATSDQIRD 452 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 453 QLKEMGITIQD--TP-QGTRWTR 472 >gi|296158961|ref|ZP_06841789.1| cysteinyl-tRNA synthetase [Burkholderia sp. Ch1-1] gi|295890836|gb|EFG70626.1| cysteinyl-tRNA synthetase [Burkholderia sp. Ch1-1] Length = 465 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 180/471 (38%), Positives = 259/471 (54%), Gaps = 47/471 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQDGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + + +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIKALHEDADALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A++ ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIERLEANGYAYQASDGDVNYAVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPDEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNFWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L++ T+ D A L Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALTRL-YTALKDVTPDGAELDWNEAY 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVCKEHLN 402 +A+ +D NT A+ L +LA E + D L A +LG E + +L Sbjct: 345 AQRFQAAMNDDFNTPVAVSVLFELASEVNRTRDSALARQLRSLGAVIGLLGRE-PRAYLQ 403 Query: 403 KNISI---------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + AIE + R + K F++AD IR +L G LED Sbjct: 404 QAAGTAAVGALEAAAIEAKIAARAAAKQSKDFAAADRIRSELLEAGVALED 454 >gi|296333091|ref|ZP_06875545.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672793|ref|YP_003864464.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149707|gb|EFG90602.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411036|gb|ADM36154.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] Length = 466 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 172/488 (35%), Positives = 257/488 (52%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I+ + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPA------ISERFIKAYFEDVGALGCRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VMENMDAIIDFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEAL--TGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDP---- 349 ++R ML HYR PI+++ + RL A L +ST+ D Sbjct: 286 PQLLRFFMLSVHYRHPINYSEELLENTKSAFNRLKTAYSNLQHRLNSSTNLTEDDDQWLE 345 Query: 350 -------AVLSALYNDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHI 391 A A+ +D NT +AI L LA+ + K+H + +F+ + Sbjct: 346 KVEEHRKAFEEAMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 406 LGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILED------T 456 Query: 452 QRMTRWKQ 459 + TRWK+ Sbjct: 457 AQGTRWKR 464 >gi|187932481|ref|YP_001884454.1| cysteinyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B] gi|229558625|sp|B2TIF6|SYC_CLOBB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187720634|gb|ACD21855.1| cysteine--tRNA ligase [Clostridium botulinum B str. Eklund 17B] Length = 470 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 259/475 (54%), Gaps = 51/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK EF I P ++MYVCGPTVY+F HIGN R IVFD + R L Y E Sbjct: 1 MRIFNTLTRKKEEFIPITPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E ++ I K +++ +D +L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKKANEEGTTV------KEIGDKYIKEYYEDADKLQIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 AT +I +I + +I G+AYE ++ F+T +YG S + I++ +MG T Sbjct: 113 ATEYIEDIIDFVAQLIEKGYAYEVEGDVYFNTKKFNDYGKLSGQSIEDLQMGASNRTSSI 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF +WK P EP W+ PWG GRPGWHIECS M+ LG DIH GG+DL Sbjct: 173 ADERKNDPMDFAIWKAQKPGEPAWKCPWGMGRPGWHIECSCMAKKILGDTIDIHAGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE+AQS + + AN W+H+ ++N+ +KMSKS NF T ++L + Sbjct: 233 TFPHHENEVAQSEALTGM-RFANYWMHSAYVNINNQKMSKSLNNFFTARDIL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDF----------TVQRLTEA----EILLSKWPQTSTSKGI 346 + + V+R M+ HYR I+F +V+RL A E L+ + + + S+ Sbjct: 285 EYDSDVVRFFMMSAHYRLQINFSKDLLDSAKASVERLYNAIGNLENLIDEVSRENISEEE 344 Query: 347 ID---------PAVLSALYNDLNTVSAIQALHKLARESTKNHDL---LPIFNASAHI--- 391 ++ + + +D NT A+ L +L +++ N ++ + N + ++ Sbjct: 345 VNYLNSLKKYREKYIEKMDDDFNTADALTVLFELTKDTNTNINVNSSKELVNKALNLIRE 404 Query: 392 LG--IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LG + + ++ ++ IE L+Q+R K K F+ +D IR L+ +G +LED Sbjct: 405 LGAPLGLLQKITKGSLEDEIESLIQQRQDARKNKDFALSDKIRDDLKDRGIVLED 459 >gi|313884762|ref|ZP_07818517.1| cysteine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312620023|gb|EFR31457.1| cysteine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 475 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 251/487 (51%), Gaps = 71/487 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ +F P+ + MYVCGPTVY++ HIGNAR + FD + R L+Y + Sbjct: 3 IQIYNTLTRQKEDFVPQVPNQVSMYVCGPTVYNYIHIGNARSAVAFDTVRRYLQYRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A+ E S ++ K F +DT + L PR Sbjct: 62 -VNYVSNFTDVDDKIIKAAKAEDLST------EALSDKYIAAFKEDTAAINILPANIHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 +HI ++I I+ +I HAY + ++ F T S YG S + I E ++G T Sbjct: 115 VKDHITEIIDYIKVLIESDHAYASQGDVYFRTQSFDGYGKLSHQSISELEIGASQRTDTA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E W SPWG GRPGWHIECS MS+ YLG DIHGGG DL Sbjct: 175 ETDRKEDPLDFALWKSAKEGEVSWPSPWGPGRPGWHIECSVMSTKYLGDTLDIHGGGQDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQ+ + E AN W+HNGF+ +G KMSKS GNF+ + +LL Sbjct: 235 EFPHHENEIAQAEAHNHGENFANYWMHNGFVTFGEDGEKMSKSLGNFVLLRDLL------ 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------TSKGIID 348 + V+R + HYR P+ + Q L EA+ + + + S T++ +D Sbjct: 289 -KEADPMVVRYLLGTVHYRRPLRYDDQALQEAQTNIKRLEEVSRRLDLRLADATTQANLD 347 Query: 349 P-----AVLS--------ALYNDLNTVSAIQALHKLARESTKN----------------- 378 AVL+ A+ +D N + + + +L +E + Sbjct: 348 TDEANLAVLAQLEADFIQAMDDDFNAANGMTVIFELVKEINRYLQSEVVSEKVLSKMQEI 407 Query: 379 -HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 DLL IF L E ++ L++ I+ L+ ER + K K F AD IR QL+ Sbjct: 408 FKDLLAIFG-----LVFETKEDLLDQE----IQALIDERNVARKAKDFGRADEIRDQLKE 458 Query: 438 KGFILED 444 +G L+D Sbjct: 459 QGIYLDD 465 >gi|167563301|ref|ZP_02356217.1| cysteinyl-tRNA synthetase [Burkholderia oklahomensis EO147] gi|167570473|ref|ZP_02363347.1| cysteinyl-tRNA synthetase [Burkholderia oklahomensis C6786] Length = 465 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 166/393 (42%), Positives = 230/393 (58%), Gaps = 32/393 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ HIG+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +TS+ T D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIRSLTSRFTDAMNADFDALGVERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATEFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P EP W+S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEEPVGASWDSKYGLGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 ++ A V+R ++ THYR P++++ L +A L++ T+ D A L Sbjct: 288 --NFDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRL-YTALKDATPDSAPLDWNEAH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD 380 +A+ +D NT A+ L +LA E + D Sbjct: 345 ARRFAAAMNDDFNTPVAVAVLFELATEVNRTRD 377 >gi|317152040|ref|YP_004120088.1| cysteinyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316942291|gb|ADU61342.1| cysteinyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 485 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 152/328 (46%), Positives = 194/328 (59%), Gaps = 17/328 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF + + + MYVCG T YD HIG+AR +VFDVLYR LR+ + Sbjct: 1 MRLYNTLARKKQEFVPENGNAVNMYVCGITAYDLCHIGHARSSVVFDVLYRYLRHKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN TDIDDKII RA + + + I + +F D RL L +P+ Sbjct: 60 -VTFIRNFTDIDDKIINRANE------VGKEAAAIAEQFIGEFYVDMDRLGVLRADVEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP+MI L +I HAY + ++ F S YG S R IDE + G R+ Sbjct: 113 CTEHIPEMIALTARLIGQDHAYATPSGDVYFRVRSFAGYGKLSGRNIDELESGARIDPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG GRPGWH+ECSAMS Y DIHGGG DL FP Sbjct: 173 EKQDPLDFALWKAAKPGEPSWESPWGPGRPGWHLECSAMSEKYAPLPLDIHGGGQDLSFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 233 HHENEIAQSEAATG-KPFANFWVHNGFVQINSEKMSKSLGNFFTIRDILD-------KFL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE 331 +R +L HYR P+DF+ L EAE Sbjct: 285 PETLRYFLLTMHYRSPLDFSFDALEEAE 312 >gi|289548117|ref|YP_003473105.1| cysteinyl-tRNA synthetase [Thermocrinis albus DSM 14484] gi|289181734|gb|ADC88978.1| cysteinyl-tRNA synthetase [Thermocrinis albus DSM 14484] Length = 490 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 186/510 (36%), Positives = 263/510 (51%), Gaps = 78/510 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL ++ EF ++P + +Y CG TVYD +H+G+ R +IVFDVL R L Y G + Sbjct: 3 LRLYNTLTGRVEEFVPLNPPQVLIYTCGVTVYDDSHVGHGRSLIVFDVLRRYLEYL-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII +AR+E + ++ + +D + +PR Sbjct: 62 -VKFVRNFTDVDDKIINKAREECTHF------MTVANRYIASYYRDMEAIGVRPADVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I LIQ +I G+AY + ++ F + P YG SRR +E + G RV Sbjct: 115 VTEHIQEIIQLIQGLIDKGYAYVSGGDVYFSVKAFPEYGKLSRRNPEELEAGARVEPSEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + EP W+SPWG GRPGWH EC AM +LG DIHGGGLDL+FPH Sbjct: 175 KRDPLDFALWKAAKAGEPAWDSPWGPGRPGWHTECVAMIFKHLGTTIDIHGGGLDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A W+HNG + + G+KMSKS GN++T+ E+ + Sbjct: 235 HENEIAQAEALTG-RPFARYWVHNGLVTVGGQKMSKSLGNYVTLREVYS-------RYHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRL--------------TEAEILLSKWPQTSTSKG--IID 348 V+RL +LMTHYR P+DF+ ++ T+AE LL + P + ++D Sbjct: 287 DVLRLLVLMTHYRSPLDFSWDKMEETKRSYERLKNAITDAE-LLKELPSEEVREKHPLLD 345 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLA------------RESTKNHDLLPIFNASA- 389 + L +D NT SA+ L L R K +L AS Sbjct: 346 KIRDAEEKFFADLADDFNTPSALGRLFTLVSEMGKLKKEVLERRRVKTSELDAYQQASET 405 Query: 390 ---HILGIEVCKEHLNKNISI--AIEK------LVQERLILL---------KMKKFSSAD 429 H+ GI E L S+ +EK ++ ERLI L + K ++ AD Sbjct: 406 LLKHLRGIFGLFEDLYPVCSVRRVVEKEMEAGHVLDERLIELLIEVRSKARQEKAYAIAD 465 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IR +L G ILED P T+WK+ Sbjct: 466 LIRDRLRELGIILED--TPAG----TKWKR 489 >gi|329116688|ref|ZP_08245405.1| cysteine--tRNA ligase [Streptococcus parauberis NCFD 2020] gi|326907093|gb|EGE54007.1| cysteine--tRNA ligase [Streptococcus parauberis NCFD 2020] Length = 447 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/468 (36%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+++ R + +F I + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDSMTRSLRDFYPIKENQVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A Q + P A I + F++DT +L + PR Sbjct: 61 -VNYISNFTDVDDKIINAAAQAKMT-PKELADKFIAA-----FMEDTAQLGIKPASQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ Q+I + +I G AY++ ++ F NYG + + +++ ++G E Sbjct: 114 VMDYMDQIIDFVAALIEKGFAYQSEGDVYFRVDKSSNYGKLANKTLEDLEIGASGRTDTE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDLKENPLDFALWKSAKVGEISWESPWGAGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLQTVD----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------AV 351 V+R + YR+PI+FT + + +AE+ L T + D A Sbjct: 288 --GQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTQSQPLTGDASAEELQSYVTAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D N + I + A+ H + F + + GI ++ LN + Sbjct: 346 TDAMDDDFNAANGITVVFDFAKWINSGHYTEAVKAAFESMLDVFGIIFQEDVLNAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F+ AD IR QL ++G L D K +G R TR Sbjct: 402 IEALIADRQAARASRDFAKADAIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|222152459|ref|YP_002561634.1| cysteinyl-tRNA synthetase [Streptococcus uberis 0140J] gi|222113270|emb|CAR40797.1| cysteinyl-tRNA synthetase [Streptococcus uberis 0140J] Length = 446 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 174/468 (37%), Positives = 254/468 (54%), Gaps = 40/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R++ +F+ I+ + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRQLRDFKPINDNQVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII +A E+ P A I + F++DT++L T PR Sbjct: 60 QVNYISNFTDVDDKII-KAAAENGVTPKELADRFIAA-----FMEDTSKLGIKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I I ++ G AY+ ++ F + NY + + + + ++G E Sbjct: 114 VMDYMDEIIAFISVLMEKGFAYQVAGDVYFRVAKSENYARLANKTLADLEVGASGRTDSE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDLKENPLDFALWKSAKSGEISWESPWGPGRPGWHIECSVMATELLGHTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQS-EAKTGHTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTVD----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS----KGIIDPAV 351 V+R + YR+PI+FT + + +AE+ L + P TS K I+ A Sbjct: 288 --GQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTYRLPVAETSDLGYKTYIE-AF 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I + A+ H ++ F + GI +E L+ + Sbjct: 345 KAAMDDDFNAANGITVVFDFAKWINSGHYSAEIKTAFEEMLAVFGIVFEEEVLDAD---- 400 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F+ AD IR QL S+G L D K +G R TR Sbjct: 401 IEALIAERQEARAQRDFAKADQIRDQLASQGIKLLDTK---DGVRWTR 445 >gi|326562651|gb|EGE12953.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 103P14B1] Length = 483 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 164/390 (42%), Positives = 227/390 (58%), Gaps = 33/390 (8%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++Y+TL F+ I I +YVCG TVYD+ H+G+AR M+ FDV+ R LR Sbjct: 8 QSQLQLYDTLSASKRPFKPIHAGQIGIYVCGMTVYDYCHMGHARVMVGFDVIVRWLRAIG 67 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII+RA + I+ +T + +D L C +P Sbjct: 68 YQ--VNYVRNITDIDDKIIQRAYDN------GETITELTDRFITAMHQDEQFLGCQSPNI 119 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 +PRAT HI M +LI ++ AY+ + ++ + PNYG S+R +D+ + G R Sbjct: 120 EPRATEHIENMQHLIDVLLTKNLAYQGSGGDVYYAIEKFPNYGKLSKRHVDDMQAGASER 179 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG+ FDIHGGG Sbjct: 180 VSTAEDKRHPFDFVLWKTAKPSEPHWQSPWGLGRPGWHIECSAMSTCCLGETFDIHGGGH 239 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI E+++ KF Sbjct: 240 DLQFPHHENEIAQSEGATG-KTYANHWMHMGFINIDGEKMSKSLGNFFTIREVVD--KFH 296 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---GIID------- 348 + IR +L +HYR P++F+ L E+ LS+ Q+ S G+I Sbjct: 297 PET-----IRFFLLSSHYRSPVNFSDTALKESHTALSRIYQSLKSAENFGVISIMPNAWE 351 Query: 349 ----PAVLSALYNDLNTVSAIQALHKLARE 374 A A+ +D NT A+ L + E Sbjct: 352 SEAGQAFAKAMNDDFNTPKAVSVLFSVVTE 381 >gi|300691854|ref|YP_003752849.1| cysteine tRNA synthetase (cysteine--tRNA ligase) [Ralstonia solanacearum PSI07] gi|299078914|emb|CBJ51575.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Ralstonia solanacearum PSI07] Length = 465 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 179/469 (38%), Positives = 259/469 (55%), Gaps = 43/469 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T++ +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGALTNRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGRLQDNGLAYQAADGDVNYAVRKFPGYGRLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCELLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L+ Sbjct: 234 DLQFPHHENEIAQAEGANG-NTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVLKV---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA- 350 + V+R +L +HYR ++++ L +A L++ P + ++ + Sbjct: 289 ---YDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAEADARPDWNEPH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH--LNK 403 A+ +D NT A+ AL +LA E T++ L A A ++G+ H L Sbjct: 346 GKRFREAMNDDFNTPVAMAALFELASEVNKTRSPALASQLVALAGVMGLLGRDPHAFLQG 405 Query: 404 NISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + A +E ++ R + F+ AD IR L + G +LED Sbjct: 406 GVGAAADGLDAAEVEARIEARRAAKAARDFARADSIRADLLAAGIVLED 454 >gi|51894254|ref|YP_076945.1| cysteinyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] gi|61216176|sp|Q67JP9|SYC_SYMTH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|51857943|dbj|BAD42101.1| cysteinyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] Length = 471 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 175/476 (36%), Positives = 249/476 (52%), Gaps = 53/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYN L RK +F ++P +R Y CGPTVYD+ HIGNAR +VFD + R L Y + Sbjct: 3 IRIYNDLTRKKEDFVPLEPGKVRFYNCGPTVYDYFHIGNARNFVVFDTVRRYLEYRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDD++I+RAR+ ++ S + + Q + D L PR Sbjct: 62 -VTFVQNFTDIDDRMIKRARERGITV------SELAEEMIQAYFADAGALGVRPADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPE 181 AT I + I +IQ +I GHAY ++ F ++ P+YG S + ++E G RV Sbjct: 115 ATALIDEQIAMIQQLIDKGHAYVVEGGDVYFRVTTSPDYGKLSHKNLEELVAGASERVDP 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK P EP W +PWG GRPGWHIECSAM+ YLG DIH GG DL Sbjct: 175 DDRKEHPFDFALWKGQKPGEPAWPAPWGPGRPGWHIECSAMARKYLGDTIDIHAGGEDLT 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + A W+HN L ++G KMSKS GNF T+ ++L K++ G Sbjct: 235 FPHHENEIAQSEAVTG-KPFARYWMHNAHLMIDGAKMSKSVGNFFTVRDIL--KRYDGE- 290 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------DP 349 V+R+ +L HYR + F+ Q + + L + T + + + Sbjct: 291 ----VVRMFLLSAHYRTQLSFSDQLMEDTRRALERLYNTVANLEHLAKTAPRAEMTAEEQ 346 Query: 350 AVL-----------SALYNDLNTVSAIQALHKLARE----------STKNHDLLPIFNAS 388 AVL +A+ +D NT + + L+RE + L + Sbjct: 347 AVLAELSQARERFVAAMDDDFNTAEGLAVIFDLSRELNSRVKPGASAAFAEGGLALLREL 406 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+ + ++ + + IE L+ R K + F+ AD IR QL + G ILED Sbjct: 407 AGVLGL-LERKAQPQELDAEIEALIAARQEARKARNFAEADRIRDQLRAMGIILED 461 >gi|182437812|ref|YP_001825531.1| cysteinyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] gi|229558792|sp|B1VS94|SYC_STRGG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|178466328|dbj|BAG20848.1| putative cysteinyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 466 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/471 (35%), Positives = 253/471 (53%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++T R+I +F + + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLHDTNARQIRDFVPLTAGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIAKSAEQGRPWWSIG-------YENERAFNDGYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HIP+MI +++ +I GHAYEA+ + FD S+P Y + S +++D+ + + E Sbjct: 114 RATGHIPEMIEMMRGLIERGHAYEADGNVYFDVRSLPGYLTLSNQELDDLRQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DLIFP Sbjct: 173 GKRDQRDFAMWKATKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGIDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ ++ A W+HNG++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQATAYG--DEFAKYWVHNGWVTMSGEKMSKSLGNSVLVSEMV-------KHWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--------GIIDPAVL 352 V+R + HYR I+++ + L EAE ++ + Q T K + PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVTEKTGEVVPPADEVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH--- 400 A+ DL A+ +H R+ L A +LG++ H Sbjct: 344 EAMDEDLGVPQALAIIHTTVRQGNSALAADDKEAAADRLAEVRAMLGVLGLDPLDPHWAG 403 Query: 401 -------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R K +++AD IR QL G ++ED Sbjct: 404 EGDRGEDLHGVVDTLVRLVLDQRQSARARKDWAAADAIRDQLNQSGLVIED 454 >gi|332141401|ref|YP_004427139.1| cysteinyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551423|gb|AEA98141.1| cysteinyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] Length = 460 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 257/480 (53%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT R+ +F + + +YVCG TVYD +H+G+AR + FDVL R LR+ + Sbjct: 2 LHLYNTRTREKAKFVPLQEGKVGLYVCGITVYDLSHMGHARTYLSFDVLVRYLRHLGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++ +T++ +D + L P +P Sbjct: 61 -VKYVRNITDIDDKIIARANEN------GESFEALTARTIAMMHEDFAAINLLEPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + H+ ++I +IQ ++ G+AY+A + +++FD S +YG S++ +D+ K G RV Sbjct: 114 VSGHMDEIIEIIQRLMDKGYAYQAKSGDVLFDVSKYEDYGKLSKQDLDQLKAGARVEVAA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 GKDDPLDFVLWKTTKPGEPAWQSPWGEGRPGWHIECSAMNHKHLGAHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N+W+H G + + KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCA-YDTPYVNVWMHAGMVQVNDEKMSKSLGNFFTLRDVL-------KEHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R ++ HYR + ++ +T+A+ L + T S G + Sbjct: 286 SETLRFFLMSAHYRSQLSYSQDNITQAKAALERLYTALRGVVVNESTDLSYGGYLARFEA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGI-------EVCKE 399 A+ +DLN A L +ARE + D L + ILG+ + Sbjct: 346 AMNDDLNVPEAFSVLFDVARELNRQKDNAEEAGKLAAVLKGLGAILGMLQSDPDTYLKGG 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K +++AD R L +KG +LED G T W++ Sbjct: 406 EGNDDEAAEIEALIKQRNDARASKDWAAADAARDALNAKGVVLED------GPSGTTWRK 459 >gi|303228928|ref|ZP_07315738.1| cysteine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] gi|302516342|gb|EFL58274.1| cysteine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] Length = 482 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 175/500 (35%), Positives = 250/500 (50%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 2 REITVYNTMTRQKEVFTPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E A +I ++ + + L Sbjct: 61 YK-VTYVQNFTDVDDKIINTSNGE------GVAWDVIANRYIDSYFEVMDALGVERADVY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HIP ++ +I+ +I G+AYE + ++ F +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIPDILKMIETLIDKGYAYELDGDVYFSVEKFDHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPFWESPWGNGRPGWHIECSAMSQKYLGEEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGHHPSVKYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLGTAIENLLYLEKCEAGPCDDAQRLL 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLA------------RESTKNHDLLP----IF 385 +A+ +D NT A ++ LA RE D + IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQVVTGREGVVCQDAIAEVKRIF 406 Query: 386 NASAHILGIEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ++G+ N A ++ ++ R + K+++ AD IR +L G Sbjct: 407 KFMTEVIGVLEKAWEGNTGADAAEYEQLMDVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 467 TIED--SPTG----ARWKKR 480 >gi|81429293|ref|YP_396294.1| cysteinyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] gi|109894906|sp|Q38UZ6|SYC_LACSS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78610936|emb|CAI55988.1| Cysteinyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] Length = 468 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 250/473 (52%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ ++ ++MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 2 LTVYNTLTRQKETFKPLEEGRVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A E+ ++P + + F +DT L T PR Sbjct: 61 -VDYVSNFTDVDDKMIKAANAENITVPE------LADRYITAFKEDTKALNIEPATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 AT++I +++ IQ++I +AY + ++ + YG + + +D+ + G T Sbjct: 114 ATDNIEEIVAFIQDLIAKDYAYAVDGDVYYRARKFKAYGHLAGQDLDQLEQGASEHTATE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK E WESPWG+GRPGWHIECS MS+ YLG DIHGGG DL Sbjct: 174 ETLRKEDPIDFALWKAEKGNEIAWESPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A + N W+HNGF+ + + +KMSKS GNF+T+++L++ Sbjct: 234 EFPHHENEIAQS-EAKTGQTFVNYWLHNGFVTVGDDDQKMSKSLGNFVTVHDLIQEVN-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------- 349 +R M T YR PI ++ L EA+ L + T + P Sbjct: 291 -----PQALRFLMSSTQYRRPIRYSQSLLAEAQTNLDRLKTTLDNLAFRQPTAEPGEDQI 345 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLARES--------TKNHDLLPIFNASAHI 391 A ++A+ +D N + + L++LA+ S ++ L + + Sbjct: 346 VMDKAAELEAAFVTAMDDDFNVQNGLTQLYELAKLSNQYLEQPTVQSDTLTSLATRLTRL 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L I ++ + +E L++ER K F+ +D IR QL+++G ILED Sbjct: 406 LAIFGVVFKADQLLDTEVESLIEERQAARAAKDFAKSDAIRDQLKAQGIILED 458 >gi|329906071|ref|ZP_08274354.1| Cysteinyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327547346|gb|EGF32177.1| Cysteinyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 185/488 (37%), Positives = 261/488 (53%), Gaps = 61/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F + RMYVCG T+YD+ HIG+ R M+ FDV+YR L+ Sbjct: 4 LKIYNTLAREKQLFTPMVAGEARMYVCGMTIYDYCHIGHGRMMMAFDVVYRWLQV--SGY 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + SI S +T + DT L L PTH PR Sbjct: 62 SVTYVRNITDIDDKIIRRAVENKESI------SSLTERFIDAMAYDTAALGILPPTHAPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ +I + G AY+ ++ ++ + P YG S + +D+ + G RV Sbjct: 116 ATRYVPQMLNMITRLQEKGLAYQGDDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 176 GKRDPLDFVLWKAAKDSEPEDAKWASPWGHGRPGWHIECSAMACALLGEQFDIHGGGTDL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A+ + AN W+HNG + ++ KMSKS NF I ++L Sbjct: 236 QFPHHENEIAQSEGAND-KPFANYWLHNGHVRIDNEKMSKSLDNFFLIRDVLA------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDPA------ 350 + A V+R +L HYR P++++ L +A + L++ + S+ +D A Sbjct: 288 KYDAEVLRFFILRAHYRSPLNYSDTHLDDARVALTRLYTALKDVAPSEEELDWASPYPQR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD---------------LL---PI-FNASAHI 391 A+ +D NT A+ L LA E ++ D LL P+ F AH Sbjct: 348 FAEAMDDDFNTPLALAVLFDLATEINRSGDPALAAQLRALAAVLGLLERSPLEFLQGAH- 406 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 G E + I + + R+ + +++AD +R +L + G +LED P N Sbjct: 407 -GTVASDED-----NALIAEKIAARIAAKIARDYATADRLRDELLAAGILLED--KPGN- 457 Query: 452 QRMTRWKQ 459 +T W++ Sbjct: 458 --ITEWRR 463 >gi|299143767|ref|ZP_07036847.1| cysteine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518252|gb|EFI41991.1| cysteine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 465 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/486 (36%), Positives = 256/486 (52%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + + MY CGPTVY++ H+GNARP+ VFD L R + Y Sbjct: 1 MRLYNTLTRKKEEFKPLKDGLVTMYNCGPTVYNYIHVGNARPLTVFDTLRRY--FIYKGL 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDK+I +A E ++ + + + ++F D L T P Sbjct: 59 DVKFVVNFTDIDDKLINKANAEGITV------AEVAERYIKEFKVDANGLHLYDYETLNP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI Q+I IQ +I AY + ++ FD +S +YG S +K+++ G RV Sbjct: 113 RATEHINQIIDFIQILIDKNAAYVSEGDVYFDINSAKDYGKLSHKKLEDLISGARVDVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNPADF LWK EP W +PWG GRPGWHIECS M+ LG+ DIH GG DL FP Sbjct: 173 IKKNPADFALWKAKKEGEPYWTAPWGEGRPGWHIECSVMAKTLLGETIDIHSGGEDLQFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + A W+HNG + ++ KMSKS GNF T+ E+ E + Sbjct: 233 HHENEIAQSETCNGV-PFAKFWLHNGMITVDNEKMSKSKGNFFTVREVSE-------EFN 284 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSK--------- 344 V+R +L HYR PI+F+ ++R+ A+ L ++ + + Sbjct: 285 LEVLRFFLLGCHYRSPINFSREIMEQTKNGLERIYNAKYKLEEFLENCIDREFSDEDKKQ 344 Query: 345 -GIIDPAVL---SALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILG 393 GII + ++ +D+NT AI A++ + + E + + I+N + Sbjct: 345 LGIIADEIKFFEESMEDDINTADAITAIYNIVKFINIELNEDSNKKLVDEIYNTLLRLSK 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + E +NI +E+L++ER K K F AD IR L SK ++ED + Sbjct: 405 VLGILELERENIDEEVERLIKEREDARKNKDFKRADEIRDILASKNILIEDTRTG----- 459 Query: 454 MTRWKQ 459 T+WK+ Sbjct: 460 -TKWKR 464 >gi|269124972|ref|YP_003298342.1| cysteinyl-tRNA synthetase [Thermomonospora curvata DSM 43183] gi|268309930|gb|ACY96304.1| cysteinyl-tRNA synthetase [Thermomonospora curvata DSM 43183] Length = 465 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/470 (35%), Positives = 249/470 (52%), Gaps = 47/470 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +Y+T R + F+ + + MYVCG T HIG+ R +++DVL R LR+ E Sbjct: 2 SLHLYDTGTRTVRPFKPLHEGRVGMYVCGATPQAEPHIGHLRSGVIYDVLLRWLRHSGYE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TD+DDKII A + +P + N + F + L CL PT +P Sbjct: 62 --VTFVRNVTDVDDKIIAAAAER--GVPW----FALAEANQRIFTRGYELLGCLPPTVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-IPNYGSFSRRKIDEQKMGTRVPEK 182 RAT H+P+MI LI+ ++ GHAY A ++ FD +S +YG S ++++ + P + Sbjct: 114 RATGHVPEMIVLIRRLLEAGHAYTAAGDVYFDVNSWAEHYGELSHQRLEHMRPAGDTPNE 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WE+PWG GRPGWH+ECS MS+ YLG FDIHGGG+DLIF Sbjct: 174 DAKRDPRDFALWKGAKPGEPSWETPWGEGRPGWHLECSVMSTKYLGPTFDIHGGGVDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS A + A W+HNG L ++G KMSKS GN + + +LLE + Sbjct: 234 PHHENERAQSQAAG--DGFARYWLHNGLLTVDGVKMSKSIGNVVLLTDLLEKAR------ 285 Query: 303 PAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK----GIIDPAV------ 351 PV +R + HYR +D+T L EA + T G +PA Sbjct: 286 --PVEVRYYLASAHYRSLMDYTDGSLAEAVTAYQRIEGFVTRAAELVGAGEPAAELPEAF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGI----------EVCK 398 +A+ +DL A+ LH+ R+ + D + A + G+ E Sbjct: 344 TAAMNDDLGVPQALAVLHETVRDGNSALASGDRAEVARRLASVRGMMGVLGLDPLAEPWA 403 Query: 399 EHLNKNISIAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ ++ LV ++R K +++AD IR L + G ++ED Sbjct: 404 DDRGSDLRPVVDALVKVALEQRQAARARKDYAAADEIRDSLAAAGIVVED 453 >gi|302336403|ref|YP_003801610.1| cysteinyl-tRNA synthetase [Olsenella uli DSM 7084] gi|301320243|gb|ADK68730.1| cysteinyl-tRNA synthetase [Olsenella uli DSM 7084] Length = 493 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 177/495 (35%), Positives = 245/495 (49%), Gaps = 73/495 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ + E + ++ +IRMYVCGPTVYD HIGNAR + FDV+ R L Y + V Sbjct: 3 VYNSQTHRKEELRPLEEGHIRMYVCGPTVYDQIHIGNARTFLSFDVIRRYLTYKGYQ--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+ +N+TD+DDKII RA E S + + + + F+ R L P +PRAT Sbjct: 61 TFAQNLTDVDDKIINRANDEGRSA------TEVAEEFSCAFIDQMRRFNILDPDIRPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + M +I+ +I GHAY A N ++ F S +YGS S R +D+ + G RV K Sbjct: 115 REVEAMRQMIETLIEKGHAYVAGNGDVYFSVRSDHDYGSLSGRDLDQLRAGERVEVNEDK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF LWK + P EP W SPWG GRPGWH EC AM HYLG DIHGGG DL+FPHH Sbjct: 175 RDPFDFALWKAAKPGEPSWPSPWGEGRPGWHTECCAMIHHYLGTPIDIHGGGQDLVFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENE AQ+ CA ANIW+H G L + G KMSKS GNF+T+ ++L+ +PA Sbjct: 235 ENECAQALCA-WGAPLANIWMHAGMLRVNGDKMSKSLGNFLTLEDVLD-------DYPAG 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KW-----PQTS-------TSK 344 +RL ML THYR +DF +L A L +W PQ + Sbjct: 287 AVRLLMLQTHYRSALDFQTDQLEGAVGTLERLRTCVKNLRWAAENAPQDGELCDADRSLG 346 Query: 345 GIIDPA---VLSALYNDLNTVSAIQALHKLA-------RESTKNHDLLPIFNAS------ 388 +D + + +D NT + A+ L E P+ A+ Sbjct: 347 AAVDATHAEFVRQMDDDFNTSGGLAAIFSLVTSANTYLAERAGVVATAPVLRAADMLVEL 406 Query: 389 AHILGIEVCKEHLNKNISI-------------------AIEKLVQERLILLKMKKFSSAD 429 + ++GI++ + + + I A L+ R K + AD Sbjct: 407 SAVMGIDLVRGSGGEELPIELVDLARRHAGFEGHLADEAARALIDAREAARAAKDWGVAD 466 Query: 430 YIRKQLESKGFILED 444 IR + G +LED Sbjct: 467 AIRDGIAGLGLVLED 481 >gi|227501071|ref|ZP_03931120.1| cysteine--tRNA ligase [Anaerococcus tetradius ATCC 35098] gi|227216844|gb|EEI82242.1| cysteine--tRNA ligase [Anaerococcus tetradius ATCC 35098] Length = 471 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 181/478 (37%), Positives = 259/478 (54%), Gaps = 55/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ID + I+MYVCGPTVYD+ HIGNARP++VFD L R + + + Sbjct: 1 MKIHNTLTRQKEEFIPIDENKIKMYVCGPTVYDYMHIGNARPLVVFDTLRRYMNFRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV N TD+DDKII ++ E S +T K +++D L T P Sbjct: 60 -VKYVVNFTDVDDKIINKSIAEGISTKE------VTDKYIAAYMEDAKDLNIDEENTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----V 179 RAT + +I ++ +I G AYE+ ++ FD S +YG S + I++ G Sbjct: 113 RATEVMDDIIAFVKGLIDKGMAYESEGDVYFDVSKADDYGKLSGKNIEDLIHGASNRLDR 172 Query: 180 PEKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+P DF LWK++ E W+SPWG GRPGWHIECS MS LG DIH GG Sbjct: 173 ADGSKKKSPVDFALWKKTKKEGEISWKSPWGDGRPGWHIECSTMSKKILGDTIDIHAGGE 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS + +K AN W+HNG + ++G KMSKS GNF T++++ Sbjct: 233 DLEFPHHENEIAQSEGLNG-KKFANYWMHNGMIQVDGSKMSKSLGNFFTLHDI------- 284 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLS--KWPQTSTSKGI 346 + + VIR +L T+YR+PI+FT +QRLT A L K Q S+ I Sbjct: 285 KKEYDLSVIRFWLLTTNYRQPINFTKEIINQANSSLQRLTNAYFRLEDLKKSQAEKSQTI 344 Query: 347 IDPAV----------LSALYNDLNTVSAIQALHKLAR------ESTKNHDLL----PIFN 386 + + + +DLNT AI L +A+ + + DL+ ++ Sbjct: 345 NQDLIRELDSFKNKFIEVMDDDLNTADAITVLFDIAKFINTKIDENSDKDLVNKTFDLYK 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + LG+ K+ N +++ IE+L+ +R K K F++AD IR +L G ++D Sbjct: 405 SLFDTLGLLAKKKEDNVDVA-KIEELIAKRSEAKKAKDFATADAIRDELSHMGITIKD 461 >gi|312865434|ref|ZP_07725661.1| cysteine--tRNA ligase [Streptococcus downei F0415] gi|311098952|gb|EFQ57169.1| cysteine--tRNA ligase [Streptococcus downei F0415] Length = 447 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 175/468 (37%), Positives = 253/468 (54%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLHEGQVNMYVCGPTVYNYIHIGNARSSVAFDTIRRYFEY--AGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ S P + A I + F++DT L T PR Sbjct: 60 QVNYISNFTDVDDKIIKAAKEADMS-PKDLAAKFIAA-----FMEDTKALGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 + + Q+I +Q ++ G AYEA ++ F NY + + + + + ++G E Sbjct: 114 VMDFMDQIIDFVQVLMDKGFAYEAGGDVYFRVQKSHNYAALANKTLADLEVGASGRTDSE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TELKEDPLDFALWKSAKLGEISWDSPWGAGRPGWHIECSVMSTTILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------SKGIIDPAVL-- 352 V+R + HYR+PI+FT + + +A+ L T T + +D + Sbjct: 287 -DGQVLRFFLATQHYRKPINFTDKAIHDAKANLKYLKNTYTLPLDEQSDQADLDKFLADF 345 Query: 353 -SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIA 408 +A+ +D N + I + LA+ H I +A A +L GI +E L+ Sbjct: 346 KTAMDDDFNAANGITVIFDLAKWINSGHYNQAIKDAFAKMLEVFGIVFQEESLDSE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR L ++G L D K +G R TR Sbjct: 402 IEALIKKRQAARAAKDFATADKIRDDLAAQGIKLLDTK---DGVRWTR 446 >gi|283852945|ref|ZP_06370204.1| cysteinyl-tRNA synthetase [Desulfovibrio sp. FW1012B] gi|283571635|gb|EFC19636.1| cysteinyl-tRNA synthetase [Desulfovibrio sp. FW1012B] Length = 485 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 252/491 (51%), Gaps = 67/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ R F + P + MYVCG T YD HIG+AR +VFDVL R LR+ E Sbjct: 1 MQLFNTMARGKEPFVSRLPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHLGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII++A E + + I + F +D RL L +PR Sbjct: 60 -VTFVRNFTDVDDKIIKKANSEGATS------AEIAERYIAAFYEDMDRLGILRADAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I +M + +I +GHAY + ++ F S YG S R +++ + G RV Sbjct: 113 ATEYIAEMADMAARLIENGHAYRTPSGDVYFRVRSFDGYGKLSGRDVEDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK S P EP W+SP+G GRPGWH+ECS MS LG DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKASKPGEPVWDSPFGPGRPGWHLECSVMSEKLLGIPIDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + W+HNGF+ + KMSKS GNF+TI + E R P Sbjct: 233 HHENEIAQSEAATGSD-FCRFWVHNGFVRINTEKMSKSLGNFVTIRTIYE------RYLP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----------------ILLSKWPQTSTSKGI- 346 V+R ++ +HYR P+D++ Q L EAE + +KW +T I Sbjct: 286 -EVLRFFLVSSHYRSPLDYSDQALDEAEKGIKRIYAAKGQMEQALTRAKWSETKLPPEIG 344 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 ++ A+ +DLNT AI + L R + + D +L Sbjct: 345 QELNKLEEGFTGAMDDDLNTAQAIGHVFGLVRLAGRVLDDKTLAKSREAAEALGRILADL 404 Query: 386 NASAHILGI----------EVCKEHLNK-NISIA-IEKLVQERLILLKMKKFSSADYIRK 433 + + ILG+ E+ L + I A ++ LV ER K K F+ +D IR Sbjct: 405 DTWSGILGVFGRDSREFLAELKASRLARLGIDAARVDGLVAERQEARKTKDFARSDAIRD 464 Query: 434 QLESKGFILED 444 +L G + D Sbjct: 465 ELAGLGVTVMD 475 >gi|315640330|ref|ZP_07895447.1| cysteine--tRNA ligase [Enterococcus italicus DSM 15952] gi|315483992|gb|EFU74471.1| cysteine--tRNA ligase [Enterococcus italicus DSM 15952] Length = 468 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 258/493 (52%), Gaps = 63/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL RK FQ I+ ++MYVCGPTVY++ HIGN R + FD + R Y + Sbjct: 2 IQIYNTLTRKKEVFQPIEEGKVKMYVCGPTVYNYIHIGNGRSTVSFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII H + N+ + ++ F +DT L PR Sbjct: 61 -VTYVSNFTDVDDKII------HAAKEANETALEVANRFIAAFYEDTEALHVKKADINPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +HIP +I I +I G+AYEA ++ + T YG S + IDE ++G E Sbjct: 114 VMDHIPDIIDFISVLINKGYAYEAQGDVYYRTRKFTKYGQLSDQSIDELEIGASQRTGQE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W SPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQIKEDPLDFALWKAAKADEISWSSPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A+ + AN W+HNG++ + + +KMSKS GNF+T++EL+ Sbjct: 234 FPHHENEIAQS-EANTGKPFANYWMHNGYVTIGEDDQKMSKSLGNFVTVHELV------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------STS 343 + V+R + T YR PI ++ L EA L + T S + Sbjct: 286 KEVDPKVLRFFLATTQYRRPIRYSQTTLKEAATNLQRLKNTVDNVVFRQEKAVAQLASDA 345 Query: 344 KGIIDPAVLSALY-----NDLNTVSAIQALHKLAR-------ESTKNHDLLP----IFNA 387 + D A L + +D N + I ++LA+ +S + +L + Sbjct: 346 DKLTDLAKLEEQFITEMDDDFNAANGITVTYELAKWLNIYLEQSDVSQAVLAQGLSQLTS 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GIE E ++ + IE+L+++R K + F+ +D IR QL+ +G +LED Sbjct: 406 WLEIFGIEFTNELVDAD----IEQLIEQRNQARKDRDFARSDEIRDQLKEQGIVLEDTAQ 461 Query: 448 PDNGQRMTRWKQK 460 TRW+++ Sbjct: 462 G------TRWRRE 468 >gi|294630050|ref|ZP_06708610.1| cysteinyl-tRNA synthetase [Streptomyces sp. e14] gi|292833383|gb|EFF91732.1| cysteinyl-tRNA synthetase [Streptomyces sp. e14] Length = 466 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 250/470 (53%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R + E Sbjct: 3 IRLYDTSARQIRDFTPLKPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFSHRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKII +A ++H I +N + F T L CL P+++PR Sbjct: 62 -VTFIRNVTDIDDKIITKAHEQH------RPWWSIGYENERAFNDGYTALGCLPPSYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+M+ +++ +I GHAY A+ + FD S P Y SR+++D + E Sbjct: 115 ATGHVPEMVEMMRRLIERGHAYAADGNVYFDVRSFPGYLELSRQELDNLLQPSGEGET-G 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP W +PWG GRPGWH+ECSAM+ YLG FDIHGGGLDLIFPH Sbjct: 174 KRDPRDFAMWKAAKPGEPTWPTPWGEGRPGWHLECSAMAHKYLGSAFDIHGGGLDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 234 HENEIAQAKAYG--DEFARYWVHNAWVTMAGDKMSKSLGNSVLVSEMV-------KQWRP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGI-------IDPAVLSA 354 V+R + HYR I+++ + L EAE ++ + Q K + PA A Sbjct: 285 IVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFIQRVVEKAGPVEPSAEVPPAFAEA 344 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH----- 400 + +DL A+ +H R+ L A +LG++ E Sbjct: 345 MDDDLGVPQALAVVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDEQWAGEG 404 Query: 401 ------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R K +++AD IR QL G ++ED Sbjct: 405 GDRGEDLHGVVDTLVRMVLDQREAARARKDWTTADAIRDQLGQSGLVIED 454 >gi|268318912|ref|YP_003292568.1| hypothetical protein FI9785_418 [Lactobacillus johnsonii FI9785] gi|262397287|emb|CAX66301.1| cysS [Lactobacillus johnsonii FI9785] Length = 470 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/480 (36%), Positives = 258/480 (53%), Gaps = 60/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 1 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARKEHTTV------EKLAERYIKAFMEDTEALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 113 ATHEIKEIIDFVQDLIDKGFAYEVDGDVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------QTSTS 343 + V+R M YR PI+++ L +AE +L ++ +T Sbjct: 287 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETILKRYQNTLRNLDARLNDENETLED 344 Query: 344 KGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-------------PI 384 G+ D + A+ +D N +A+ ++ LA +T N+ L + Sbjct: 345 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLA--TTLNNHLQKDQVDKPALKRAKKL 402 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I G+ +E + IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 403 LIAWLEIFGVSFKEEQAGNDDE--IEKLIAQRDEARKNKDWAESDRLRDELQAKGIVIED 460 >gi|303231487|ref|ZP_07318217.1| cysteine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] gi|302513830|gb|EFL55842.1| cysteine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] Length = 482 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 175/500 (35%), Positives = 250/500 (50%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 2 REITVYNTMTRQKEVFTPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E A +I ++ + + L Sbjct: 61 YK-VTYVQNFTDVDDKIINTSNGE------GVAWDVIANRYIDSYFEVMDALGVERADVY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HIP ++ +I+ +I G+AYE + ++ F +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIPDILKMIETLIDKGYAYELDGDVYFSVEKFDHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPFWESPWGNGRPGWHIECSAMSQKYLGEEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGHHPSVKYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLGTAIENLLYLEKCEAGPCDDAQRLL 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLA------------RESTKNHDLLP----IF 385 +A+ +D NT A ++ LA RE D + IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQVVTGREGVVCQDAIAEVKRIF 406 Query: 386 NASAHILGIEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ++G+ N A ++ ++ R + K+++ AD IR +L G Sbjct: 407 KFMTEVIGVLEKAWEGNTGADAAEYEQLMDVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 467 TIED--SPAG----ARWKKR 480 >gi|167467942|ref|ZP_02332646.1| cysteinyl-tRNA synthetase [Yersinia pestis FV-1] Length = 336 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 149/327 (45%), Positives = 204/327 (62%), Gaps = 17/327 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHD-GPYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLAY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA 330 A +R ++ HYR ++++ + L +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQA 312 >gi|15617084|ref|NP_240297.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682391|ref|YP_002468775.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11134971|sp|P57558|SYC_BUCAI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765184|sp|B8D815|SYC_BUCAT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|25293242|pir||G84986 cysteine-tRNA ligase (EC 6.1.1.16) [imported] - Buchnera sp. (strain APS) gi|10039149|dbj|BAB13183.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622124|gb|ACL30280.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086211|gb|ADP66293.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086789|gb|ADP66870.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087376|gb|ADP67456.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087872|gb|ADP67951.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 464 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 252/466 (54%), Gaps = 42/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL F I + + +YVCG TVYDF HIG+ R +VFD++ R LR+ + Sbjct: 2 LKIFNTLTSTKEIFTPIKKNRVNLYVCGVTVYDFCHIGHGRTFVVFDMIVRYLRFSGFQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII ++ +E I + T+ ++ KD L P +PR Sbjct: 61 -VKYVRNITDIDDKIISKSTKEKKKI------NTFTASMIKEMHKDFDLLGISVPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T++I +I +I +I HAY N ++IF S PNYG+ SR+ + + G+R+P Sbjct: 114 VTDYIDNIIRIITTLIKKKHAYIHKNGDVIFSIDSDPNYGTLSRQSLTSLESGSRIPLNN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DFILWK S E W+SPWG+GRPGWHIECSA+++ + DIHGGG DL+FP Sbjct: 174 MKKNPLDFILWKSSNKEEYSWDSPWGKGRPGWHIECSAITNVFFNNSIDIHGGGSDLLFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE +QS C + + N W+H G + L +KMSKS GN + +L + Sbjct: 234 HHENERSQSICFNN-KSMINFWMHTGMVILNNKKMSKSLGNVYFLRNIL-------KDCD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSKGI-IDPAVLSA 354 A V+R L THYR PI + + L +A L P + +G+ + +A Sbjct: 286 AEVLRYFFLSTHYRHPIYYCEKNLDQAYTSLKYLYTALYDTNPFFNNEEGLNFELEFYNA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILG--IEVCKEHLNKN 404 + +D NT + K+AR+ KN D+L A+ LG + KE L K Sbjct: 346 MNDDFNTPAVFSIFFKIARKINFLKNKDILKTNKFAFRLKYLANNLGFLFQDPKEFLQKK 405 Query: 405 ISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ I+ L+++R I + K + AD IRK+L S ILED Sbjct: 406 TTLNLLTLKEIQLLIEKRNIARQSKLWQEADNIRKKLMSLDIILED 451 >gi|312964405|ref|ZP_07778699.1| cysteinyl-tRNA synthetase [Escherichia coli 2362-75] gi|110614083|gb|ABF02750.1| cysteine tRNA synthetase [Shigella flexneri 5 str. 8401] gi|312290882|gb|EFR18758.1| cysteinyl-tRNA synthetase [Escherichia coli 2362-75] gi|320196999|gb|EFW71618.1| Cysteinyl-tRNA synthetase [Escherichia coli WV_060327] Length = 437 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 180/459 (39%), Positives = 257/459 (55%), Gaps = 48/459 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD HIG+ R + FDV+ R LR+ G K + YVRNITDIDDKII+RA + Sbjct: 1 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK-LKYVRNITDIDDKIIKRANEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 ++ + + + KD L L P +PRAT+HI ++I L + +I GHAY Sbjct: 58 -----GESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYV 112 Query: 148 ANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A+N +++FD + P YG SR+ +D+ + G RV K+NP DF+LWK S EP W S Sbjct: 113 ADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAM+ LG FDIHGGG DL+FPHHENEIAQS CA + N W+ Sbjct: 173 PWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H+G + ++ KMSKS GNF T+ ++L + + A +R ++ HYR ++++ + Sbjct: 232 HSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNYSEEN 284 Query: 327 LTEAEILLSK-WPQTSTSKGIIDPA--------VLSALYNDLNTVSAIQALHKLAREST- 376 L +A L + + + + PA + A+ +D NT A L +ARE Sbjct: 285 LKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNR 344 Query: 377 -KNHDLLPIFNASAH------ILG-IEVCKEHLNKNISIA-------IEKLVQERLILLK 421 K D+ ++H +LG +E E ++ + A IE L+Q+RL K Sbjct: 345 LKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARK 404 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K +++AD R +L G +LED G + T W++K Sbjct: 405 AKDWAAADAARDRLNEMGIVLED------GPQGTTWRRK 437 >gi|16077162|ref|NP_387975.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221307906|ref|ZP_03589753.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221312227|ref|ZP_03594032.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317161|ref|ZP_03598455.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321424|ref|ZP_03602718.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi|549024|sp|Q06752|SYC_BACSU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|289284|gb|AAA21798.1| cysteinyl-tRNA synthetase [Bacillus subtilis] gi|467482|dbj|BAA05328.1| cysteinyl-tRNA synthetase [Bacillus subtilis] gi|499303|emb|CAA52167.1| cysteine--tRNA ligase [Bacillus subtilis subsp. subtilis str. 168] gi|2632361|emb|CAB11870.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 466 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 257/488 (52%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I+ + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------ISERFIKAYFEDVGALGCRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEAL--TGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIIDP------ 349 ++R ML HYR PI+++ + L + S+ + ++S + + Sbjct: 286 PQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSSTNLTEDDDQWLE 345 Query: 350 -------AVLSALYNDLNTVSAIQALHKLAREST----KNHD-------LLPIFNASAHI 391 A + +D NT +AI L LA+ + K+H + +F+ + Sbjct: 346 KVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 406 LGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILED------T 456 Query: 452 QRMTRWKQ 459 + TRWK+ Sbjct: 457 AQGTRWKR 464 >gi|332094204|gb|EGI99255.1| cysteinyl-tRNA synthetase [Shigella boydii 5216-82] Length = 437 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 180/459 (39%), Positives = 257/459 (55%), Gaps = 48/459 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD HIG+ R + FDV+ R LR+ G K + YVRNITDIDDKII+RA + Sbjct: 1 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK-LKYVRNITDIDDKIIKRANEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 ++ + + + KD L L P +PRAT+HI ++I L + +I GHAY Sbjct: 58 -----GESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIEEIIELTEQLIAKGHAYV 112 Query: 148 ANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A+N +++FD + P YG SR+ +D+ + G RV K+NP DF+LWK S EP W S Sbjct: 113 ADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAM+ LG FDIHGGG DL+FPHHENEIAQS CA + N W+ Sbjct: 173 PWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H+G + ++ KMSKS GNF T+ ++L + + A +R ++ HYR ++++ + Sbjct: 232 HSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNYSEEN 284 Query: 327 LTEAEILLSK-WPQTSTSKGIIDPA--------VLSALYNDLNTVSAIQALHKLAREST- 376 L +A L + + + + PA + A+ +D NT A L +ARE Sbjct: 285 LKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNR 344 Query: 377 -KNHDLLPIFNASAH------ILG-IEVCKEHLNKNISIA-------IEKLVQERLILLK 421 K D+ ++H +LG +E E ++ + A IE L+Q+RL K Sbjct: 345 LKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARK 404 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K +++AD R +L G +LED G + T W++K Sbjct: 405 AKDWAAADAARDRLNEMGIVLED------GPQGTTWRRK 437 >gi|326317611|ref|YP_004235283.1| cysteinyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374447|gb|ADX46716.1| cysteinyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 459 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 167/391 (42%), Positives = 227/391 (58%), Gaps = 35/391 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + EF ++P ++RMYVCG T+YD HIG+AR M+ FDV+ R LR G + Sbjct: 3 LRIYNTLSRAMEEFSPLEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLRSS-GLR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + I+I +T + T +D LA PT + Sbjct: 62 -VTYVRNITDIDDKIIRRA--------VERGITIRQLTDEMTAAMHEDIGALAIEPPTVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ LI + G AY A + ++ + YG S + +DE + G RV Sbjct: 113 PRATEYVPQMLSLIDTLERKGLAYRAGSGDVNYAVRRFEGYGKLSGKSLDELRAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF+LWK + P EP W+SP+G GRPGWHIECSAMS LG+ FDIHGGG Sbjct: 173 QDDKQDPLDFVLWKAAKPGEPPEAKWDSPFGTGRPGWHIECSAMSCATLGESFDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A W+HNGF+ ++ KMSKS GNF TI E+L+ Sbjct: 233 DLQFPHHENEIAQSEGATG-KPLARFWMHNGFVRVDNEKMSKSLGNFFTIREVLQQVD-- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA 350 A +R ++ THYR P++++ L +A L + P+ + DP Sbjct: 290 -----AETLRFFIVRTHYRSPLNYSDVHLQDARASLKRLYTALALVAPEDIGAIDWADPH 344 Query: 351 VL---SALYNDLNTVSAIQALHKLARESTKN 378 +A+ D T A+ L +LA E + Sbjct: 345 AARFKAAMDEDFGTPEAVAVLFELAGEVNRT 375 >gi|302380049|ref|ZP_07268526.1| cysteine--tRNA ligase [Finegoldia magna ACS-171-V-Col3] gi|302312122|gb|EFK94126.1| cysteine--tRNA ligase [Finegoldia magna ACS-171-V-Col3] Length = 448 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 174/458 (37%), Positives = 246/458 (53%), Gaps = 51/458 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y V +V N TDIDDKII Sbjct: 3 IKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGYNVKFVSNFTDIDDKII 60 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQPRATNHIPQMIYLIQNI 139 +A+ E N IT K Q ++ + + L T P+AT +I +MI ++ + Sbjct: 61 NKAKDE------NIDFREITKKYIQAYLNNVSGLNFDEDDTIHPKATEYIDEMIKFVKTL 114 Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWK-RST 198 G AY + + FD + +YG S++ ID+ + G R+ KKNP DF LWK R Sbjct: 115 EDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNSEKKNPMDFALWKKRKE 174 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS--CCAD 256 EP WESPWG GRPGWH+ECS MS LG DIH GG DL FPHHENEIAQS C Sbjct: 175 ESEPAWESPWGMGRPGWHLECSVMSKSILGDTIDIHAGGEDLQFPHHENEIAQSETCTGA 234 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 AN W+HN + ++ KMSKS NF + ++ + + VIRL +L HY Sbjct: 235 HF---ANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EKEFDLEVIRLWLLSVHY 284 Query: 317 REPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS-------ALYNDL 359 R PIDF ++ RL A+ L++ + S+ K D + + A+ +D+ Sbjct: 285 RNPIDFSHDTLVATKNSLDRLYTAKKFLNRILENSSEKEEKDDNIKTFREKFEQAMDDDI 344 Query: 360 NTVSAIQALHKLARESTKNHD-------LLP---IFNASAHILGIEVCKEHLNKNISIAI 409 NT AI L + KN+D LL + + +++LGI + KE + ++ I Sbjct: 345 NTADAISVLFDFIKYINKNYDENTSKNILLDAKKLMDDISYVLGI-LFKED-DDDLDSEI 402 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E L+++R K K F AD IR +L S G +L+D ++ Sbjct: 403 EDLIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRD 440 >gi|239995443|ref|ZP_04715967.1| cysteinyl-tRNA synthetase [Alteromonas macleodii ATCC 27126] Length = 460 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 170/480 (35%), Positives = 256/480 (53%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT R+ +F + + +YVCG TVYD +H+G+AR + FDVL R +R+ + Sbjct: 2 LHLYNTRTREKAKFVPLQEGKVGLYVCGITVYDLSHMGHARTYLSFDVLVRYMRHLGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++ +T++ +D + L P +P Sbjct: 61 -VKYVRNITDIDDKIIARANEN------GESFEALTARTIAMMHEDFAAINLLEPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + H+ ++I +IQ ++ G+AY+A + +++FD S +YG S++ +D+ K G RV Sbjct: 114 VSGHMDEIIAIIQRLMDKGYAYQAKSGDVLFDVSKYEDYGKLSKQDLDQLKAGARVEVAA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 GKDDPLDFVLWKTTKPGEPAWQSPWGEGRPGWHIECSAMNHKHLGAHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N+W+H G + + KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCA-YDTPYVNVWMHAGMVQVNDEKMSKSLGNFFTLRDVL-------KEHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVLS 353 + +R ++ HYR + ++ +T+A+ L + T S G + Sbjct: 286 SETLRFFLMSAHYRSQLSYSQDNITQAKAALERLYTALRGVEVDESTDLSYGGYLKRFEA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKEHL----- 401 A+ +DLN A L +ARE + D L + ILG+ Sbjct: 346 AMNDDLNVPEAFSVLFDVARELNRQKDNADEAGKLAAVLKGLGAILGMLQSDPDTFLKGG 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K +++AD R L +KG +LED G T W++ Sbjct: 406 EGNDDEAAEIEALIKQRNDARASKDWAAADAARDALNAKGVVLED------GPSGTTWRK 459 >gi|326778447|ref|ZP_08237712.1| cysteinyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1] gi|326658780|gb|EGE43626.1| cysteinyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1] Length = 466 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 165/471 (35%), Positives = 253/471 (53%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++T R+I +F + + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLHDTNARQIRDFVPLTAGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIAKSAEQGRPWWSIG-------YENERAFNDGYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HIP+MI +++ +I GHAYEA+ + FD S+P Y + S +++D+ + + E Sbjct: 114 RATGHIPEMIEMMRGLIERGHAYEADGNVYFDVRSLPGYLTLSNQELDDLRQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DL+FP Sbjct: 173 GKRDQRDFAMWKATKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGIDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ ++ A W+HNG++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQATAYG--DEFAKYWVHNGWVTMSGEKMSKSLGNSVLVSEMV-------KHWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--------GIIDPAVL 352 V+R + HYR I+++ + L EAE ++ + Q T K + PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVTEKTGEVVPPADEVPPAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH--- 400 A+ DL A+ +H R+ L A +LG++ H Sbjct: 344 EAMDEDLGVPQALAIIHTTVRQGNSALAADDKEAAADRLAEVRAMLGVLGLDPLDPHWAG 403 Query: 401 -------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R K +++AD IR QL G ++ED Sbjct: 404 EGDRGEDLHGVVDTLVRLVLDQRQSARARKDWAAADAIRDQLNQSGLVIED 454 >gi|229083409|ref|ZP_04215757.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-44] gi|228699842|gb|EEL52479.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-44] Length = 440 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 172/464 (37%), Positives = 248/464 (53%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y E V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYE--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I I+ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIEELVKKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ + T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYYKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT---- 323 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 324 ------VQRLTEAEILLSKWPQTSTS------KGIID-----PAVLSALYNDLNTVSAIQ 366 ++R+ A L ++ST K +++ A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLVEIEKFQLAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 L+ LA + + + F ILG+E+ KE L + IE L+Q+ Sbjct: 345 ELYNLANHANQYLLEEHTSKVVIEAYVKQFETLFGILGLELTKEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILED------TAQGTRWKR 439 >gi|71280239|ref|YP_270455.1| cysteinyl-tRNA synthetase [Colwellia psychrerythraea 34H] gi|109894893|sp|Q47XL5|SYC_COLP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71145979|gb|AAZ26452.1| cysteinyl-tRNA synthetase [Colwellia psychrerythraea 34H] Length = 469 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 170/474 (35%), Positives = 247/474 (52%), Gaps = 50/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ F I+ + +YVCG TVYD HIG+ R I FD + R LR+ + Sbjct: 2 LQIYNTLSRQKETFTPINAGKVGLYVCGCTVYDLCHIGHGRTYISFDNIARYLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD++DKII RA + N+ +T + +D L P +PR Sbjct: 61 -VNYVRNITDVEDKIINRANEN------NETTEALTERTIAAMHQDFDSLNMARPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN--------NEIIFDTSSIPNYGSFSRRKIDEQKMG 176 T H+ ++I +I+ ++ HAY A +++FD SS +YG S + +++ + G Sbjct: 114 VTTHMNEIIAMIETLVTKEHAYVAGANAASTGQGDVLFDVSSYNDYGKLSGQNLEQLQSG 173 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 +RV +K NP DF+LWK + P EP W SPWG GRPGWHIECSAM++ LG FDIHGG Sbjct: 174 SRVEVDQNKNNPLDFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNAKELGHHFDIHGG 233 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 GSDLTFPHHENEIAQSCCALNT-PYVNYWMHTGMVQVDQEKMSKSLGNFFTIRDVLA--- 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS--- 353 + A +R + HYR ++++ LT+A + + + I V++ Sbjct: 290 ----QYDAETVRFFLTTGHYRSQLNYSTDNLTQARASVERIYTSLRDVNIESDYVINKDS 345 Query: 354 --------ALYNDLNTVSAIQALHKLARESTKNH---------DLLPIFNASAHILGI-- 394 A+ +D NT A+ L ++++E DL A I+G+ Sbjct: 346 SFVKQFCQAMDDDFNTPQALAVLFEISKELNVAKAAANNALAIDLASTLVALGEIVGLLQ 405 Query: 395 ---EVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N N +A IE L+ +R K ++ AD R +L + +LED Sbjct: 406 LDPAAFLQGDNDNDEVAIIEALIVQRNQARIDKDWAMADDARDKLNAMNIVLED 459 >gi|225867828|ref|YP_002743776.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] gi|225701104|emb|CAW97948.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] Length = 447 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 242/459 (52%), Gaps = 36/459 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPITDKVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--AGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ S P A I + F++DT L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAKEAGLS-PKQLADQFIAA-----FMEDTKALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I I +I G+AYE+ ++ F + NY + + I + + G E Sbjct: 114 VMDYMDEIIVFIAALIKKGYAYESAGDVYFRVAKAANYAKLANKTIADLEAGASGRTDTE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W SPW GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEIAWASPWSSGRPGWHIECSVMATELLGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 234 FPHHTNEIAQS-EAKTGKSFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTVD----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKG----IIDPAV 351 +R + HYR+PI+FT + + +A + L + P +T+ A Sbjct: 288 --GQTLRFFLATQHYRKPINFTEKAIHDAGVNLKYLKNTLQQPTVATADASQLNAFITAF 345 Query: 352 LSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D NT + I L +A+ + + F + GI E L+ Sbjct: 346 KAAMNDDFNTANGITVLFDMAKWINSGAYSEAVKSAFEEMLAVFGIVFEAESLDTE---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE+L+ ER + F+ AD IR QL ++G L D K+ Sbjct: 402 IEQLIAERQEARANRDFAKADAIRDQLAAQGIKLLDTKD 440 >gi|313891890|ref|ZP_07825492.1| cysteine--tRNA ligase [Dialister microaerophilus UPII 345-E] gi|313119665|gb|EFR42855.1| cysteine--tRNA ligase [Dialister microaerophilus UPII 345-E] Length = 481 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 175/502 (34%), Positives = 257/502 (51%), Gaps = 68/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--Y 60 ++IK+YNTL+R+ + I+ +++YVCG T Y+ HIGNARP + +D++ R L Y Y Sbjct: 2 EEIKVYNTLKREKQILKPIEEGKVKIYVCGVTPYNHPHIGNARPAVTWDIIRRYLEYIGY 61 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V +++N TD+DDKII +A E ++++ + K L Sbjct: 62 H----VDFIQNFTDVDDKIINKANAEKSDW------KTVSTRYIDAYFKVMDALHIRRAD 111 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 P + H+ +I +++ +I GHAY N++ +D S+ +Y S RK+++ G RV Sbjct: 112 IYPYVSKHMGDIIDMVKTLIEKGHAYVLGNDVYYDISTFKDYCKLSGRKVEDMLAGARVM 171 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF LWK + P EP WESPWG GRPGWHIECS MS+HYLG FD HGGG DL Sbjct: 172 VNTAKRNPGDFALWKGAKPGEPFWESPWGNGRPGWHIECSVMSTHYLGATFDFHGGGSDL 231 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A +K W+HNGF+ + KMSKS NF + ++LE K+ G Sbjct: 232 IFPHHENEIAQSEGATG-QKFVKYWLHNGFITINSEKMSKSLNNFFLVKDVLE--KYSGD 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------QTSTSK 344 + +R +L THYR P+DF+ +RL EAE +SK +T+ S Sbjct: 289 A-----LRYFLLSTHYRSPLDFSDERLEEAEKNMSKLKDVIARIKEMEKEDGKVETNESV 343 Query: 345 GIIDPAVLS------ALYNDLNTVSAIQALHKLARESTKNHDLL---------------P 383 + A + A+ +D NT A L ++ ++ + Sbjct: 344 SLKKAAARTIEEFRQAMNDDFNTGLATGVLFDFVKDINIYYNAVNSGVAIDKEAVIEAKE 403 Query: 384 IFNASAHILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 F ILGI + + H + +E ++ R I K K++ AD IR +L Sbjct: 404 TFKTILDILGILENEWNIQESHAGSDYDALMEMILSVREIARKEKQYKLADEIRDKLAEL 463 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 G +ED RWK++ Sbjct: 464 GITVEDSATG------ARWKKR 479 >gi|296268495|ref|YP_003651127.1| cysteinyl-tRNA synthetase [Thermobispora bispora DSM 43833] gi|296091282|gb|ADG87234.1| cysteinyl-tRNA synthetase [Thermobispora bispora DSM 43833] Length = 464 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 174/488 (35%), Positives = 265/488 (54%), Gaps = 63/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + +Y+T R + EF I+P + +Y+CG TV HIG+ R + FDVL R L+R Y Sbjct: 3 LHLYDTSTRTVREFVPINPGRVSIYLCGATVQAPPHIGHIRCGVAFDVLRRWLMRLGYD- 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+ RN+TD+DDKII+ A +E +P ++ +N + F +L CL PT +P Sbjct: 62 --VTFCRNVTDLDDKIIKVAAEE--GVPW----FVVAERNQRLFTWAYDQLGCLPPTVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RA HIP+MI LI+ ++ GHAY A N++ FD S + YG S ++++ + + Sbjct: 114 RAMGHIPEMIELIKRLLDKGHAYVAGNDVYFDVRSFADRYGRLSNQRLEHMRPAGDTENE 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W +PWGRGRPGWH+ECSAM++ YLG+ FDIHGGG+DLIF Sbjct: 174 SLKRDPRDFALWKGAKPGEPSWPTPWGRGRPGWHLECSAMATKYLGETFDIHGGGVDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG L + G KMSKS GN + I+E+L + Sbjct: 234 PHHENEIAQSQAAG--DGFARYWVHNGLLKVGGEKMSKSLGNSLLISEILRKVR------ 285 Query: 303 PAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAV 351 P+ +R ++ HYR +D++ +R+ ++ + + Sbjct: 286 --PIELRYYLVAAHYRSELDYSEEALKEAAAAFRRIEGFVNRAAEMIHDVDAAAPLPQPF 343 Query: 352 LSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAH----ILGIE------- 395 + A+ +DLN A+ +H++ RE S N + + A +LG++ Sbjct: 344 VDAMNDDLNVPQALAVVHEVVREGNIAISQVNKEQVARLLAETQNMLDVLGLDPRAEPWR 403 Query: 396 -----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +E ++ +SIA+E+ R K +++AD IR +L + G ++ED P Sbjct: 404 SRNGSAMREVVDALVSIALEQRQAAR----ARKDYATADAIRDRLAAAGIVVED--TPQG 457 Query: 451 GQRMTRWK 458 TRW+ Sbjct: 458 ----TRWE 461 >gi|134045577|ref|YP_001097063.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C5] gi|132663202|gb|ABO34848.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C5] Length = 476 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 247/487 (50%), Gaps = 60/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + ++MYVCGPTVYD H G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRKEEEFKPLTEKEVKMYVCGPTVYDHTHFGHGRTYVSFDIIRRYLEHI--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII+RA ++ +P I++ F+ D L Sbjct: 60 TVNLVINFTDIDDKIIKRANEKGKNPQELSEQFINV--------FLNDMATLKVKPADIY 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+ T HIP++I I+ +I G AY+ N + F+ NYG S +++ G R+ Sbjct: 112 PKVTEHIPEIIAFIEKLIEKGFAYKTENGVYFEVKKFENYGKLSNINLEDLYSGVRIETS 171 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESP+G GRPGWHIECSAMSS YLGK FDIHGGG DL F Sbjct: 172 EKKKNPEDFALWKTAKPREPKWESPFGEGRPGWHIECSAMSSKYLGKQFDIHGGGRDLSF 231 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + N W+H GF+ + G KMSKS GNF+TI ++ + + Sbjct: 232 PHHENEIAQSVAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFVTIEDI-------SKEY 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDPAV 351 ++R + HYR PID+T + +T + L K ++ S + Sbjct: 284 DPEILRFFFIQRHYRSPIDYTAESMTHVKNNLEKIYNVIENIRISLEKSKKSGAWGENEF 343 Query: 352 L-------------SALYNDLNTVSAIQALHKLARESTKNHDLLP------------IFN 386 L A+ +D NTV A++++ +++ K L+ F Sbjct: 344 LLYDILKNSKHNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVETPSEGLLLKAFDFFK 403 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+ K N I+ L++ R L K + +D IR L++ G+++ED Sbjct: 404 IVGEIFGLFENYFKTSSESNDEEFIKFLIELRSDLRLQKNYEMSDKIRDGLKNIGYLIED 463 Query: 445 YKNPDNG 451 NP G Sbjct: 464 --NPKEG 468 >gi|150402240|ref|YP_001329534.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C7] gi|166200151|sp|A6VG07|SYC_METM7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150033270|gb|ABR65383.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C7] Length = 476 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 175/485 (36%), Positives = 248/485 (51%), Gaps = 56/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ ++ + ++MYVCGPTVYD H+G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRKEEEFKPLNENEVKMYVCGPTVYDHTHLGHGRTYVSFDIIRRYLEHI--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+R+ QE P + + + F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRS-QEKGKNPKELSETFVNV-----FLNDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I I+ +I G AY+ N + F+ NYG S +++ G R+ Sbjct: 114 VTEHIPEIIAFIEKLIEKGFAYKTENGVYFEVKKFENYGKLSNINLEDLISGARIEPSDE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + P EP WESP+G GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNPEDFALWKTAKPGEPKWESPFGEGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNFITI ++ + + Sbjct: 234 HENEIAQSVAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFITIEDI-------SKEYDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDP----- 349 ++R + HYR PID+T + ++ + L K + S GI + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMSHVKNNLEKIYNVIENIRISLEKSEKSGIWNENEFLL 345 Query: 350 ---------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP------------IFNAS 388 A+ +D NTV A++++ +++ K L+ F Sbjct: 346 YDILKNSKHNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVKTPSEGLLLKAFDFFKIV 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ KE N ++ L++ R L K + +D IR L+ G+ +ED Sbjct: 406 GEIFGLFENYFKESSESNDEGFVKFLIELRSDLRLQKNYEMSDKIRDGLKELGYQIED-- 463 Query: 447 NPDNG 451 NP G Sbjct: 464 NPKEG 468 >gi|332523431|ref|ZP_08399683.1| cysteine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314695|gb|EGJ27680.1| cysteine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176] Length = 447 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 169/468 (36%), Positives = 252/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + I MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLKENQISMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + S P + K + F+ DT +L + PR Sbjct: 60 NVNYISNFTDVDDKIIKAAAESGIS-P-----KALADKFIEAFMADTKQLGIKPASQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV-PE 181 +++ ++I +Q +I G AYE+ ++ F + NY + + + + ++G R+ E Sbjct: 114 VMDYMGEIIAFVQELIQKGFAYESAGDVYFRVTKSENYARLANKTLADLEVGASGRIDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P E W+SPW +GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 ATLKEDPLDFALWKSAKPGEIFWDSPWSKGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A ++ AN W+HNGF+N++ KMSKS GNF+T++++LE S Sbjct: 234 FPHHTNEIAQS-EAKTGQRFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLE-------S 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID--PAV 351 V+R + YR+PI+FT + + +AE+ L T S + + D + Sbjct: 286 VDGQVLRFFLATQQYRKPINFTEKAIRDAEVNLKYLKNTYLLPLKTVSDTNRLFDFKKSF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D N + I + A+ H + F + GI V +E + I Sbjct: 346 KEAMDDDFNAANGITVIFDFAKWINSGHYDQTIKTAFGEMLEVFGI-VFQEEV---IDSE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +E L+ +R + F+ AD IR QL ++G L D K +G R TR Sbjct: 402 VEALIAQRQTARAARDFAKADSIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|257058375|ref|YP_003136263.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8802] gi|256588541|gb|ACU99427.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8802] Length = 484 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 172/487 (35%), Positives = 260/487 (53%), Gaps = 63/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ + ++ IRMY CG TVYD+ H+G+AR +V+DV+ R L++ E Sbjct: 3 LTVYNTLTRRKEPLETLETGKIRMYCCGITVYDYCHLGHARTCMVWDVVRRYLQWRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RARQE ++ ++ + + + +D RL PR Sbjct: 62 -VQYIQNFTDIDDKILNRARQEGTTM------EAVSDRFIEAYFEDMERLHVQKADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + L+ + G+AY++N ++ + +YG S RK+++ + G RV Sbjct: 115 ATHTLNGIKRLVSELEAKGYAYQSNGDVYYSVRHFKDYGKLSGRKLEDLQAGASGRVEVQ 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DPEAAKKKDPFDFAVWKAAKPGEPSWDSPWGQGRPGWHIECSAMVRERLGETIDIHVGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNG + +EG KMSKS GNFITI +LL+ Sbjct: 235 DLIFPHHENEIAQSEAATG-KPLARYWLHNGMVKVEGEKMSKSLGNFITIRDLLDKVD-- 291 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------------------EILLSKWPQ 339 +RL +L HYR+P+DFT + L A ++ + P Sbjct: 292 -----PMAMRLFILQAHYRKPVDFTDEALEAATNGWHTLKEGLLFGYNHGKQLNFTASPP 346 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 + + A+ +D N + L ++A+E K ++L Sbjct: 347 HPLTSSPLTQRFQQAVDDDFNFAGGLAILFEIAKELRKEGNILVHQGHTETSPQVLEEQW 406 Query: 383 PIFNASAHILGIEV----CKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLES 437 A +LG+E +E + +S A IE+L+++R I + K ++ D +R +L++ Sbjct: 407 RTLVELAGVLGLETDISEVQEEVGNGLSDAEIEELIEQRKIARQNKNYAEGDRLRDELKN 466 Query: 438 KGFILED 444 +G IL D Sbjct: 467 QGIILVD 473 >gi|307326970|ref|ZP_07606160.1| cysteinyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113] gi|306887268|gb|EFN18264.1| cysteinyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113] Length = 465 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 252/473 (53%), Gaps = 55/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R + + Sbjct: 3 IRLYDTSARQIRDFTPLRPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAHRGYD- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q+ P I +N + F + L CL T++P Sbjct: 62 -VTFIRNVTDIDDKIIAKSAEQKRPWWAIG-------YENERAFNQAYDILGCLPVTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-- 181 RAT H+P+MI +++ +I GHAY A + FD S P Y S + +D G R P Sbjct: 114 RATGHVPEMIEMMRELIDRGHAYAAEGNVYFDVRSFPEYLKLSNQDLD----GLRQPSGE 169 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG+ FDIHGGG+DL Sbjct: 170 GEIGKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGRAFDIHGGGVDL 229 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ+ + A W HN ++ + G KMSKS GN + ++E++ + Sbjct: 230 IFPHHENEIAQAKAFG--DDFAAYWAHNAWVTMSGEKMSKSLGNSVLVSEMV-------K 280 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPA 350 W V+R + HYR I+++ + L EAE ++ T + PA Sbjct: 281 RWRPIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVMEKAGTVEPAAEVPPA 340 Query: 351 VLSALYNDLNTVSAIQALHKLARE--STKNHD-------LLPIFNASAHILGIEVCKEH- 400 A+ +DL A+ +H R+ S D L A +LG++ EH Sbjct: 341 FAEAMDDDLGVPQALAVVHTTVRQGNSALTADDKEAAVARLAEVRAMLGVLGLDPLDEHW 400 Query: 401 ---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++++R K +++AD IR QL+ G ++ED Sbjct: 401 AGGSDRGEDLHGVVDSLVRLVLEQRQAARTRKDYATADAIRDQLQQSGLVIED 453 >gi|297158396|gb|ADI08108.1| cysteinyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1] Length = 466 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 252/473 (53%), Gaps = 54/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFNPLTPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFSYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKII ++ ++ N I +N + F L CL T++PR Sbjct: 62 -VTFIRNVTDIDDKIIAKSAEQ------NRPWWAIGYENERAFNSAYDVLGCLPVTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT H+P+MI +++ +I GHAY A + FD S P Y S +++D G R P Sbjct: 115 ATGHVPEMIEMMRGLIERGHAYAAEGSVYFDVRSYPGYLQLSNQELD----GLRQPSGEG 170 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +Y K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DLI Sbjct: 171 EYGKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGVDLI 230 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+ + A W HN ++ + G KMSKS GN + ++E++ + Sbjct: 231 FPHHENEIAQAKAFG--DDFATYWTHNAWVTMSGEKMSKSLGNSVLVSEMV-------KH 281 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKG--------IIDPA 350 W V+R + HYR I+++ + L EAE ++ + Q T K + PA Sbjct: 282 WRPIVLRYYLGTPHYRSMIEYSEESLREAESAFARIEGFVQRVTEKAGKVVPPAPEVPPA 341 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH- 400 A+ +D A+ +H R+ L A +LG++ EH Sbjct: 342 FAEAMDDDFGVPQALAVVHTTVRQGNSALTADDKESAVARLAEVRAMLGVLGLDPLDEHW 401 Query: 401 ---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++++R K +++AD IR QL+ G ++ED Sbjct: 402 AGGPDRGEDLHGVVDSLVRLVLEQRQAARTRKDYATADAIRDQLQQSGLVIED 454 >gi|257067131|ref|YP_003153387.1| cysteinyl-tRNA synthetase [Anaerococcus prevotii DSM 20548] gi|256799011|gb|ACV29666.1| cysteinyl-tRNA synthetase [Anaerococcus prevotii DSM 20548] Length = 472 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 182/480 (37%), Positives = 260/480 (54%), Gaps = 58/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I+ + IRMYVCGPTVYD+ HIGNARP++VFD R +++ + Sbjct: 1 MKIHNTLTRQKEEFIPIEENKIRMYVCGPTVYDYMHIGNARPLVVFDTFRRYMQFKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV N TD+DDKII + SI +T K +++D L T P Sbjct: 60 -VKYVVNFTDVDDKIINK------SIAEGITTKEVTDKYIAAYMEDAKDLNIDEDDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----V 179 RAT + +I ++ ++ G AYE+ ++ FD S +YG S + I++ G Sbjct: 113 RATEVMDDIISFVKGLVDKGMAYESEGDVYFDVSKADDYGKLSGKNIEDLIHGASNRLDT 172 Query: 180 PEKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+P DF LWK++ E W+SPWG GRPGWHIECS MS LG+ DIH GG Sbjct: 173 ADGSKKKSPVDFALWKKTKKEGEISWKSPWGEGRPGWHIECSTMSKKILGETIDIHAGGE 232 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS + EKT AN W+HNG + ++G KMSKS GNF T++++ Sbjct: 233 DLEFPHHENEIAQSEGLN--EKTFANYWMHNGMIQVDGTKMSKSLGNFFTLHDI------ 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----EILLSKWPQTSTS 343 + + +IR +L T+YR+PI+FT +QRLT A E LL K S Sbjct: 285 -KKEYDLSIIRFWLLTTNYRQPINFTREIIEQAKASLQRLTNAYFRLEELLDKAEDKDLS 343 Query: 344 KGIID---------PAVLSALYNDLNTVSAIQALHKLAR------ESTKNHDLLP----I 384 + D + + +DLNT AI L +A+ +S+ + DL+ + Sbjct: 344 EEEKDLENNLKDFKDKFIEVMDDDLNTADAITVLFDIAKFVNTKLDSSSSKDLVDKTYKL 403 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + LG+ K+ + + IE+L+ +R K K F++AD IR +L S G ++D Sbjct: 404 YKELFESLGLLAKKKEADVD-EEKIEELIAKRSEAKKAKDFATADKIRDELSSMGITIKD 462 >gi|91784175|ref|YP_559381.1| cysteinyl-tRNA synthetase [Burkholderia xenovorans LB400] gi|123358667|sp|Q13X60|SYC_BURXL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91688129|gb|ABE31329.1| cysteinyl-tRNA synthetase [Burkholderia xenovorans LB400] Length = 465 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 179/470 (38%), Positives = 257/470 (54%), Gaps = 45/470 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQDGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTL-- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + + +D L P + Sbjct: 60 GYNVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIKALHEDADALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A++ ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIERLEANGYAYQASDGDVNYAVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPQEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNFWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L++ T+ D A L Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALTRL-YTALKDVTPDGAELDWNEAY 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIE------- 395 +A+ +D NT A+ L +LA E + D L + A +LG E Sbjct: 345 AQRFQAAMNDDFNTPVAVSVLFELASEVNRTRDPALARQLRLLGAVIGLLGREPRAYLQQ 404 Query: 396 -VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + AIE + R + K F++AD IR +L G LED Sbjct: 405 AAGAAAVGALEAAAIEAKIAARAAAKQAKDFAAADRIRSELLEAGVALED 454 >gi|332796177|ref|YP_004457677.1| cysteinyl-tRNA synthetase [Acidianus hospitalis W1] gi|332693912|gb|AEE93379.1| cysteinyl-tRNA synthetase [Acidianus hospitalis W1] Length = 467 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 180/480 (37%), Positives = 262/480 (54%), Gaps = 58/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NTL RK +F ++ ++MYVCGPTVYD+ HIG+ R + +D + R LR Sbjct: 2 IRVFNTLGRKFEDFSTVENGIVKMYVCGPTVYDYVHIGHGRTFVAYDAIVRYLRL--KGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++NITDIDDKII RA++ S I ++ ++++ + L H PR Sbjct: 60 NVIRIQNITDIDDKIINRAKETGKSW------EEIVDYYSKDYLENLSLLKVKIDLH-PR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HI ++I +Q +I GHAY A + + FD + P+YG S K D+ G ++ Sbjct: 113 VTQHIKEIINFVQGLIDKGHAYVAPSGSVYFDVDTYPHYGELSNTKKDQWNQGEEFVKE- 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG+DLIFP Sbjct: 172 -KRHPYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGEQFDIHGGGMDLIFP 230 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ + W+H FLN+ G KMSKS GN IT+ + L KK+G Sbjct: 231 HHENERAQTESLTG-KPWVRYWMHVAFLNIRGEKMSKSLGNIITLKDAL--KKYG----- 282 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILL-----------SKWPQTST 342 A V+R L +HYR PIDF+ +QRL +A +L SK Sbjct: 283 ADVLRYWYLSSHYRSPIDFSEENLEQSKVSLQRLKDALAVLKDILKEGPKSYSKDEDIKV 342 Query: 343 SKGIIDP--AVLSALYNDLNTVSAIQALHKLAR------ESTKNH-------DLLPIFNA 387 + II A+ ND +T +A++ +H++A ++T++ D IFN Sbjct: 343 QREIIQKIKEFDEAMSNDFDTATALKKIHEIANIVFSKLQNTRDFLAASIALDGFRIFNE 402 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ E+ + + I I+ +++ R +L + K + +D IR LES G + D K+ Sbjct: 403 VFGVMDEEMGLAY--ERIYEVIDGIIEVRNLLRQKKMYDLSDQIRSILESHGIKVLDSKD 460 >gi|212703175|ref|ZP_03311303.1| hypothetical protein DESPIG_01217 [Desulfovibrio piger ATCC 29098] gi|212673441|gb|EEB33924.1| hypothetical protein DESPIG_01217 [Desulfovibrio piger ATCC 29098] Length = 483 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 165/384 (42%), Positives = 215/384 (55%), Gaps = 41/384 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF + P + MYVCG T YD+ HIG+AR +VFDVL R LR + Sbjct: 1 MQLYNTLTRKKEEFVPVRPGKVNMYVCGITAYDYCHIGHARSALVFDVLVRHLRALGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII RA +E + F +D RL + H+PR Sbjct: 60 -VTFVRNFTDVDDKIIRRANEEKRDW------REVGQTYIDAFHEDMDRLNVVRADHEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I QM L +I G AY + ++ F + P YG S R +DE + G RV Sbjct: 113 ATEYIQQMQDLCSELIAQGKAYAVPSGDVYFRVRAYPPYGKLSGRSLDELQAGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS YL DIHGGG DLIFP Sbjct: 173 EKQDPLDFALWKAAKPGEPFWESPWGKGRPGWHIECSAMSKEYL--PLDIHGGGQDLIFP 230 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A + A W+HNGF+ + KMSKS GNF TI ++L S+ Sbjct: 231 HHENEIAQTEAACSCQ-LARFWVHNGFVQVNAEKMSKSLGNFKTIRDILA-------SYL 282 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVL- 352 +R +L HYR PIDFT +QR+ E ++ K + + K + PA + Sbjct: 283 PETLRFFLLGKHYRSPIDFTADIMDESEKALQRIYECQLEAGKALERAKWKKVDLPADIL 342 Query: 353 -----------SALYNDLNTVSAI 365 +AL +D+NT A+ Sbjct: 343 KEWDEHGQGFNAALDDDVNTAQAL 366 >gi|228950638|ref|ZP_04112772.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808989|gb|EEM55474.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 440 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 245/464 (52%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWP--------QTSTSKGIID-------------PAVLSALYNDLNTVSAIQ 366 L + + +S + D A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEIEKFQTAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + H + A ILG+E+ KE L + IE+L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDILGLELSKEEL---LDKEIEELIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILED------TAQGTRWKR 439 >gi|172035425|ref|YP_001801926.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] gi|171696879|gb|ACB49860.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] Length = 482 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 178/485 (36%), Positives = 257/485 (52%), Gaps = 61/485 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R F I+ ++MY CG TVYD+ H+G+AR IV+DV+ R L++ + Sbjct: 3 LTVYNTLTRNKEPFTTIEEGKVKMYCCGITVYDYCHLGHARTCIVWDVVRRYLQWRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY++N TDIDDKI+ RARQE ++ ++ + + + +D L PR Sbjct: 62 -VTYIQNFTDIDDKILNRARQEKTTM------EAVSERFIEAYFEDMECLNVAKADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-- 180 AT+ + + L+ + G+AY + ++ ++ YG S RK+++ + G RV Sbjct: 115 ATHTLNGIQRLVSELEAKGYAYASEGDVYYNVHQFKPYGKLSGRKLEDLQAGASGRVAVE 174 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E KK+PADF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DAEASKKKDPADFAVWKSAKPGEPAWDSPWGKGRPGWHIECSAMVRERLGETIDIHVGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELLE Sbjct: 235 DLIFPHHENEIAQSEAATG-KPLARYWLHNGMVKVGGEKMSKSLGNFTTIRELLE----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRL--------TEAEILLSKWPQTS-----TSKG 345 + +RL +L HYR+P+DFT + L T +E LL + Q S ++ Sbjct: 289 --KFDPMAVRLFILQAHYRKPVDFTDEALEAATKGWQTLSEGLLFGFQQGSKLGFKENRS 346 Query: 346 IIDPAVL----SALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PI 384 + P + + +D N + L ++A+E K +LL Sbjct: 347 ELLPEFIQRFQDTVDDDFNFAGGLAVLFEIAKELRKEGNLLVHQGKTETPSELLQKQWQT 406 Query: 385 FNASAHILGIEVCKEHLNKNIS-----IAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A A +LG+E +N S AIE +++R K K F+ +D IR +L+ +G Sbjct: 407 LIALATVLGLEADSNPVNSEKSDGLDDAAIEAFIEKRKEARKNKNFAESDRIRDELKEQG 466 Query: 440 FILED 444 IL D Sbjct: 467 VILVD 471 >gi|227894572|ref|ZP_04012377.1| cys-tRNA synthetase [Lactobacillus ultunensis DSM 16047] gi|227863731|gb|EEJ71152.1| cys-tRNA synthetase [Lactobacillus ultunensis DSM 16047] Length = 477 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 182/493 (36%), Positives = 264/493 (53%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 4 VKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINEIINFVKVLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------------- 343 + V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNIDYRLDDNTASEKS 347 Query: 344 ----KGI--IDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 K I D ++A+ +D N +A+ A++ L A + D L F Sbjct: 348 SELVKAIEDTDQKFIAAMDDDFNVQNALTAVYDLLSVVNANANSKKADKDALKQFEEKLT 407 Query: 387 ASAHILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A I G++ +C ++ N IE LV++R K ++++D +R QL+ G ++ Sbjct: 408 AWLLIFGVDTNKLCAQNTGSN-DDEIEALVKKRDEARANKDWATSDQLRDQLKEMGITIQ 466 Query: 444 DYKNPDNGQRMTR 456 D P G R TR Sbjct: 467 D--TP-QGTRWTR 476 >gi|42518493|ref|NP_964423.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] gi|61216256|sp|Q74L26|SYC_LACJO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|41582778|gb|AAS08389.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] Length = 470 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 173/480 (36%), Positives = 258/480 (53%), Gaps = 60/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 1 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARKEHTTV------EKLAERYIKAFMEDTEALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 113 ATHEIKEIIDFVQDLIDKGVAYEVDGDVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------QTSTS 343 + V+R M YR PI+++ L +AE +L ++ +T Sbjct: 287 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLNDENETLED 344 Query: 344 KGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-------------PI 384 G+ D + A+ +D N +A+ ++ LA +T N+ L + Sbjct: 345 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLA--TTLNNHLQKDQVDKPALKRAKKL 402 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I G+ +E + IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 403 LIAWLEIFGVSFKEEQAENDDE--IEKLIAQRDEARKNKDWAESDRLRDELQAKGIVIED 460 >gi|220930944|ref|YP_002507852.1| cysteinyl-tRNA synthetase [Halothermothrix orenii H 168] gi|219992254|gb|ACL68857.1| cysteinyl-tRNA synthetase [Halothermothrix orenii H 168] Length = 484 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 178/492 (36%), Positives = 258/492 (52%), Gaps = 71/492 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK +F ++ +RMYVCG TV ++AHIG+ R + +DV+ R L Y E Sbjct: 2 LRVYNTLSRKKEKFTPLETGKVRMYVCGLTVQNYAHIGHIRSAVNYDVIRRYLEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDI++KI+ RAR+E P+ + K T+ +++D ++ R Sbjct: 61 -VTYVQNFTDINEKIVARAREEGLR-PLE-----LADKYTKAYLEDIEKMKIKRADVYCR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+ I ++I +++ ++ G+AYE N + F +YG S R ++E + G RV Sbjct: 114 ATDTIKEIIKMVKKLLDKGYAYEVNGNVYFSVEKFSDYGKLSGRNLEEMQAGARVEVNEE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ E W+SPWG+G PGWHIECSAMS YLGK DIHGGG DLIFPH Sbjct: 174 KRHPMDFALWKKAPAGEISWDSPWGKGWPGWHIECSAMSIKYLGKRIDIHGGGTDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + W+HNG +NL+G KMSKS GNF T+ E+L + + Sbjct: 234 HENEIAQSESCTGEKPFVKYWLHNGSVNLKGEKMSKSLGNFFTVREIL-------KEFKP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------SKGII----------- 347 +R +L HYR PIDF + + A K T KG+I Sbjct: 287 DEVRYFLLTKHYRSPIDFNFEEVEAARKSWRKLVNTYQVMVQILEKGVITKNKITENTKG 346 Query: 348 DPAVLS-----------ALYNDLNTVSAIQALHKLARE------------STKNHDLLP- 383 + ++S A+ +D NT A +H+LARE + + +L Sbjct: 347 ENTIISILNKKEKEFEEAMDDDFNTARATGVMHELAREINTFVNSPEFELNGETSKVLKK 406 Query: 384 ---IFNASAHILGI--------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 +F+ + ILG+ EV E LN + +E + R + K + AD IR Sbjct: 407 AQNLFDRFSDILGLDLAFSSSDEVDNEILNNLVDFILEIRDEAR----QEKNWQLADRIR 462 Query: 433 KQLESKGFILED 444 LE GF ++D Sbjct: 463 DGLEDLGFEIKD 474 >gi|219681836|ref|YP_002468222.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471540|ref|ZP_05635539.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254765183|sp|B8D9R3|SYC_BUCA5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219624679|gb|ACL30834.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 464 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 177/466 (37%), Positives = 252/466 (54%), Gaps = 42/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL F I + + +YVCG TVYDF HIG+ R +VFD++ R LR+ + Sbjct: 2 LKIFNTLTSTKEIFTPIKKNRVNLYVCGVTVYDFCHIGHGRTFVVFDMIVRYLRFSGFQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII ++ +E I + T+ ++ KD L P +PR Sbjct: 61 -VKYVRNITDIDDKIISKSTKEKKKI------NTFTASMIKEMHKDFDLLGISVPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T++I +I +I +I HAY N ++IF S PNYG+ SR+ + + G+R+P Sbjct: 114 VTDYIDNIIRIITTLIKKKHAYIHKNGDVIFSIDSDPNYGTLSRQSLTSLESGSRIPLNN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DFILWK S E W+SPWG+GRPGWHIEC+A+++ + DIHGGG DL+FP Sbjct: 174 MKKNPLDFILWKSSNKEEYSWDSPWGKGRPGWHIECTAITNVFFNNSIDIHGGGSDLLFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE +QS C + + N W+H G + L +KMSKS GN + +L + Sbjct: 234 HHENERSQSICFNN-KSMINFWMHTGMVILNNKKMSKSLGNVYFLRNIL-------KDCD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSKGI-IDPAVLSA 354 A V+R L THYR PI + + L +A L P + +G+ + +A Sbjct: 286 AEVLRYFFLSTHYRHPIYYCEKNLDQAYTSLKYLYTALYDTNPFFNNEEGLNFELEFYNA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILG--IEVCKEHLNKN 404 + +D NT + K+AR+ KN D+L A+ LG + KE L K Sbjct: 346 MNDDFNTPAVFSIFFKIARKINFLKNKDILKTNKFAFRLKYLANNLGFLFQDPKEFLQKK 405 Query: 405 ISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ I+ L+++R I + K + AD IRK+L S ILED Sbjct: 406 TTLNLLTLKEIQLLIEKRNIARQSKLWQEADNIRKKLMSLDIILED 451 >gi|329121962|ref|ZP_08250574.1| cysteine--tRNA ligase [Dialister micraerophilus DSM 19965] gi|327467260|gb|EGF12763.1| cysteine--tRNA ligase [Dialister micraerophilus DSM 19965] Length = 481 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 175/502 (34%), Positives = 257/502 (51%), Gaps = 68/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--Y 60 ++IK+YNTL+R+ F+ I+ +++YVCG T Y+ HIGNARP + +D++ R L Y Y Sbjct: 2 EEIKVYNTLKREKQIFKPIEEGKVKIYVCGVTPYNHPHIGNARPAVTWDIIRRYLEYIGY 61 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V +++N TD+DDKII +A E ++++ + K L Sbjct: 62 H----VDFIQNFTDVDDKIINKANAEKSDW------KTVSTRYIDAYFKVMDALHIRRAD 111 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 P + H+ +I +++ +I GHAY N++ +D S+ +Y S RK+++ G RV Sbjct: 112 IYPYVSKHMEDIIDMVKTLIEKGHAYVLGNDVYYDISTFKDYCKLSGRKVEDMLAGARVM 171 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF LWK + P EP WESPWG GRPGWHIECS MS+HYLG FD HGGG DL Sbjct: 172 VNTAKRNPGDFALWKGAKPGEPFWESPWGNGRPGWHIECSVMSTHYLGATFDFHGGGSDL 231 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A +K W+HNGF+ + KMSKS NF + ++LE K+ G Sbjct: 232 IFPHHENEIAQSEGATG-QKFVKYWLHNGFITINSEKMSKSLNNFFLVKDVLE--KYSGD 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------QTSTSK 344 + +R +L THYR P+DF+ +RL EAE +SK +T+ S Sbjct: 289 A-----LRYFLLSTHYRSPLDFSDERLEEAEKNMSKLKDVIARIKEMEKEDGKVETNESV 343 Query: 345 GIIDPAVLS------ALYNDLNTVSAIQALHKLARESTKNHDLL---------------P 383 + A + A+ +D NT A L ++ ++ + Sbjct: 344 SLKKAAARTIEEFRQAMNDDFNTGLATGVLFDFVKDINIYYNAVNSGVAIEKEAVIEAKE 403 Query: 384 IFNASAHILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 F ILGI + + + +E ++ R K K++ AD IR +L Sbjct: 404 TFKTILDILGILESEWNTQESYAGSDYDALMEMILSVRETARKEKQYKLADEIRDKLAEL 463 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 G I+ED RWK++ Sbjct: 464 GIIVEDSATG------ARWKKR 479 >gi|218439673|ref|YP_002378002.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7424] gi|226735050|sp|B7K7T8|SYC_CYAP7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218172401|gb|ACK71134.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7424] Length = 486 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 179/489 (36%), Positives = 257/489 (52%), Gaps = 65/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F+ ++P +RMY CG TVYD+ H+G+AR +V+DV+ R L++ + Sbjct: 3 LTIYNTLTRQKEPFEPLEPGKVRMYCCGITVYDYCHLGHARTCLVWDVVRRYLQWRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RAR+E S+ ++ + + + +D RL PR Sbjct: 62 -VQYIQNFTDIDDKILNRARKEGTSM------EDVSERFIKAYFEDMDRLHIQKADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + L+ + G+AY A+ ++ + S +YG S RK+++ + G RV Sbjct: 115 ATHTLDGIKRLVYELEQKGYAYPADGDVYYSVRSFSDYGKLSGRKLEDLQAGASGRVDLE 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E KK+P DF LWK + P EP WESPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DSESQKKKDPFDFALWKAAKPGEPSWESPWGLGRPGWHIECSAMVRERLGETIDIHVGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI +LL Sbjct: 235 DLIFPHHENEIAQSEAATG-KPLARYWMHNGMVKVGGEKMSKSLGNFTTIRDLLA----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLS--------KWPQTST 342 + +RL +L THYR P+DFT + L A E LL W Q S+ Sbjct: 289 --QFDPMAVRLFILQTHYRNPLDFTPKALEAATNGWQTLQEGLLFGYLFGEKLGWDQLSS 346 Query: 343 SKGIIDPAVL-----SALYNDLNTVSAIQALHKLARESTKNHDLL--------------- 382 + + + L A+ +D N + L ++A++ K ++L Sbjct: 347 NSSVREDNPLVQQFQDAVDDDFNFAGGLAVLFEIAKDLRKEGNILVHQEKTETSPEKLKE 406 Query: 383 --PIFNASAHILGIE-----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + +LG+E V +E + IE L+++R K K F+ D IR L Sbjct: 407 QWQTLVQLSQVLGLEAHPPQVHRETTDGLTDAEIETLIEQRTQARKAKNFAEGDRIRDDL 466 Query: 436 ESKGFILED 444 ++KG L D Sbjct: 467 KAKGITLID 475 >gi|220917782|ref|YP_002493086.1| cysteinyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|254765172|sp|B8JDH1|SYC_ANAD2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219955636|gb|ACL66020.1| cysteinyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 481 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 150/341 (43%), Positives = 206/341 (60%), Gaps = 20/341 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++TL + E ++P +R+YVCGPTVYD++H+G+AR +V+DV+ R LR E Sbjct: 3 IQVHDTLTAQKRELVPLEPGKLRLYVCGPTVYDYSHLGHARCYVVWDVVVRHLRARGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII+RA E PI + S+ F +D L L P +PR Sbjct: 62 -VRFVRNFTDVDDKIIQRA-NERGEDPI-----ALASRFADAFHEDMDALGNLRPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + HIP+++ LI ++ G AY N ++ + P YG S+R +D+ G RV Sbjct: 115 VSGHIPEIVALIARLVERGFAYAPGNGDVYYAVRKFPEYGRLSKRNLDDLIAGARVEPGE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWHIECSAM+ +LG D+H GG DL+FP Sbjct: 175 AKRDPLDFALWKAAKPGEPAWESPWGKGRPGWHIECSAMTQKHLGAPIDLHAGGKDLVFP 234 Query: 244 HHENEIAQSCCAD----RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HH NEIAQS A E A W+HNGF+ ++ KMSKS GNF TI ++L +F G Sbjct: 235 HHTNEIAQSVAATSDGLHAEDFARYWMHNGFVQIDDEKMSKSLGNFFTIRDVL--ARFDG 292 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 + +R +L THYR +F+ Q L EAE LS +T Sbjct: 293 EA-----LRFFLLGTHYRRDFNFSDQVLAEAERRLSALYET 328 >gi|297200591|ref|ZP_06917988.1| cysteinyl-tRNA synthetase [Streptomyces sviceus ATCC 29083] gi|197709716|gb|EDY53750.1| cysteinyl-tRNA synthetase [Streptomyces sviceus ATCC 29083] Length = 465 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 252/487 (51%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTSARQIRDFAPLTAGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFEYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERA-RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKII +A Q+ P I +N + F T L CL P+++P Sbjct: 62 -VTFVRNVTDIDDKIIAKAAEQKRPWWAIG-------YENERAFNDGYTALGCLPPSYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+ +M+ ++Q +I GHAYE++ + FD S P Y SR+++D + E Sbjct: 114 RATGHVTEMVEMMQGLIERGHAYESDGNVYFDVRSFPGYLELSRQELDNLLQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP W +PWG GRPGWH+ECSAM+ YLG FDIHGGGLDLIFP Sbjct: 173 GKRDPRDFAMWKSAKPGEPTWSTPWGPGRPGWHLECSAMAHKYLGTAFDIHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQAKAFG--DDFAQYWVHNAWVTMAGDKMSKSLGNSVLVSEMV-------KQWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGI-------IDPAVLS 353 V+R + HYR I+++ L EAE ++ + Q K + PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEDALREAESAFARIEGFVQRVVEKAGPVEPSAEVPPAFAE 343 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH---- 400 A+ +DL A+ +H R+ L A +LG++ EH Sbjct: 344 AMDDDLGVPQALAVVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDEHWAGE 403 Query: 401 ------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 L+ + + ++ +R K +++AD IR QL G +ED G + Sbjct: 404 TDRGDDLHGVVDSLVRLVLDQREAARARKDWATADAIRDQLGQSGLTIED------GPQG 457 Query: 455 TRWKQKP 461 RW P Sbjct: 458 PRWTLGP 464 >gi|308070997|ref|YP_003872602.1| Cysteinyl-tRNA synthetase (cysteine--tRNA ligase) [Paenibacillus polymyxa E681] gi|305860276|gb|ADM72064.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Paenibacillus polymyxa E681] Length = 467 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 178/491 (36%), Positives = 259/491 (52%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ R F ++P ++MYVCGPTVYD+ HIGNARP+IVFDV+ L Y + Sbjct: 3 LQIYNTMTRSREPFAPLEPGKVKMYVCGPTVYDYIHIGNARPVIVFDVVRSYLEYLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I +AR+ ++ +S + K + +D L A + PR Sbjct: 62 -VNYVVNFTDVDDKLIRKARE------LDMDVSAVAEKFIAAYYEDLAGLNVPAASMNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ ++ G+AYE + ++ + T +YG S + ++E + G R+ Sbjct: 115 VTESMDLIIDFIKELVDKGYAYENDGDVFYRTKKFKDYGQLSGQNLEELQFGIRINVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DF+LWK + P E W SPWG GRPGWHIECSAM+ HYLG DIHGGG DL FPH Sbjct: 175 KENAEDFVLWKAAKPGEIHWSSPWGDGRPGWHIECSAMARHYLGDTLDIHGGGQDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E AQS + + W+HNG++ ++ KMSKS GN I + +L K Sbjct: 235 HECECAQSEVITG-KPLSRYWMHNGYIRIDNEKMSKSLGNGILVKDLRAHHK-------P 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------------------QTSTSKGI 346 +R ML THYR P+++ + +++AE + + + ST Sbjct: 287 EALRYFMLSTHYRNPLNYNQETMSQAENSVERIANAVANVKHRLANALEGNGEVSTELQT 346 Query: 347 IDPAVLSA----LYNDLNTVSAIQAL--------HKLARESTKNHDL---LPIFNASAHI 391 +L + +D NT AI A+ H L R+ +L L F++ + Sbjct: 347 KLDGILQQFGEKMNDDFNTPDAITAVFDWVSEANHLLQRDVVHQAELQAVLHTFHSMNSV 406 Query: 392 LGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 L I E +E L+ IE+L+ ER+ K K +S AD IR L +KG +LE D Sbjct: 407 LRIYSEPSEELLDDE----IEQLIAERVEARKTKNWSRADEIRDLLAAKGIVLE-----D 457 Query: 450 NGQRMTRWKQK 460 Q M RW++K Sbjct: 458 TAQGM-RWRRK 467 >gi|228912829|ref|ZP_04076476.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228943896|ref|ZP_04106281.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815729|gb|EEM61965.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228846765|gb|EEM91770.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 440 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 173/464 (37%), Positives = 248/464 (53%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT---- 323 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 324 ------VQRLTEAEILLSKWPQTSTS------KGIID-----PAVLSALYNDLNTVSAIQ 366 ++R+ A L ++ST K + D A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLADLEKFQTAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + H + A ILG+E+ +E L + IE L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKDRNIILED------TAQGTRWKR 439 >gi|291563603|emb|CBL42419.1| cysteinyl-tRNA synthetase [butyrate-producing bacterium SS3/4] Length = 469 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 180/477 (37%), Positives = 251/477 (52%), Gaps = 55/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF ++P ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTLTKRKEEFVPVEPGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E DA I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEGV-----DA-ETISKRYIAECKKDMEGMNIEPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +I +I G+AY A+ + + +YG S + +D+ + G R V Sbjct: 113 ATEEICGMLNMISTLIEKGYAYVAADGTVYYSVRKFKDYGKLSHKNLDDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS M+ YLG DIH GG DL Sbjct: 173 GEEGKQDPNDFVLWKPKKEGEPYWESPWCEGRPGWHIECSVMAKRYLGDEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSEAANG-KPFAKYWMHNAFLNIDNKKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTS 343 + V+R ML HYR P++F+ +++L EAE + T Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERILTGMEKLREAEAKAADGTMTEEE 344 Query: 344 KGIIDPAV------LSALYNDLNTVSAIQALHKLAR--------ESTKNHD--LLPIFNA 387 A+ +A+ +D NT AI A+ +L + STK + + Sbjct: 345 LENKKKAMELVAKYEAAMDDDFNTADAISAIFELIKLSNSTVSGASTKEYVSWMKNEIQR 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++GI E + + +E L+ +R K K F+ AD IR +L G +LED Sbjct: 405 LCDVMGI--ITEKKAEVLDSEVEDLIAQRQAARKAKNFALADEIRGKLLDMGIVLED 459 >gi|221198382|ref|ZP_03571428.1| cysteinyl-tRNA synthetase [Burkholderia multivorans CGD2M] gi|221208941|ref|ZP_03581938.1| cysteinyl-tRNA synthetase [Burkholderia multivorans CGD2] gi|221171224|gb|EEE03674.1| cysteinyl-tRNA synthetase [Burkholderia multivorans CGD2] gi|221182314|gb|EEE14715.1| cysteinyl-tRNA synthetase [Burkholderia multivorans CGD2M] Length = 465 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 164/395 (41%), Positives = 229/395 (57%), Gaps = 36/395 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIDAMHEDEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIERLEANGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPEGASWESKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWLHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWSE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHD 380 +A+ +D NT AI L +LA E + D Sbjct: 343 PHAQRFAAAMNDDFNTPVAIATLFELAGEVNRTRD 377 >gi|197122993|ref|YP_002134944.1| cysteinyl-tRNA synthetase [Anaeromyxobacter sp. K] gi|229558614|sp|B4UGC3|SYC_ANASK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|196172842|gb|ACG73815.1| cysteinyl-tRNA synthetase [Anaeromyxobacter sp. K] Length = 481 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 150/341 (43%), Positives = 206/341 (60%), Gaps = 20/341 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++TL + E ++P +R+YVCGPTVYD++H+G+AR +V+DV+ R LR E Sbjct: 3 IQVHDTLTAQKRELVPLEPGKLRLYVCGPTVYDYSHLGHARCYVVWDVVVRHLRARGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII+RA E PI + S+ F +D L L P +PR Sbjct: 62 -VRFVRNFTDVDDKIIQRA-NERGEDPI-----ALASRFADAFHEDMDALGNLRPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + HIP+++ LI ++ G AY N ++ + P YG S+R +D+ G RV Sbjct: 115 VSGHIPEIVALIARLVERGFAYAPGNGDVYYAVRKFPEYGRLSKRNLDDLIAGARVEPGE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWHIECSAM+ +LG D+H GG DL+FP Sbjct: 175 AKRDPLDFALWKAAKPGEPAWESPWGKGRPGWHIECSAMTQKHLGAPIDLHAGGKDLVFP 234 Query: 244 HHENEIAQSCCAD----RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HH NEIAQS A E A W+HNGF+ ++ KMSKS GNF TI ++L +F G Sbjct: 235 HHTNEIAQSVAATSDGLHAEDFARYWMHNGFVQIDDEKMSKSLGNFFTIRDVL--ARFDG 292 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 + +R +L THYR +F+ Q L EAE LS +T Sbjct: 293 EA-----LRFFLLGTHYRRDFNFSDQVLAEAERRLSALYET 328 >gi|161524376|ref|YP_001579388.1| cysteinyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|189350869|ref|YP_001946497.1| cysteinyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|229558623|sp|A9AHN6|SYC_BURM1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160341805|gb|ABX14891.1| cysteinyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|189334891|dbj|BAG43961.1| cysteinyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] Length = 465 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 164/395 (41%), Positives = 229/395 (57%), Gaps = 36/395 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIDAMHEDEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIERLEANGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPEGASWESKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWLHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHD 380 +A+ +D NT AI L +LA E + D Sbjct: 343 PHAQRFAAAMNDDFNTPVAIATLFELAGEVNRTRD 377 >gi|206560514|ref|YP_002231278.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia J2315] gi|229558622|sp|B4ED73|SYC_BURCJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|198036555|emb|CAR52452.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia J2315] Length = 465 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 177/472 (37%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D + L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDESALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A++ ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQASDGDVNYSVRKFTNYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W S +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ +D L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVDADTLALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQASGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLEAGIALED 454 >gi|253577158|ref|ZP_04854478.1| cysteinyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843402|gb|EES71430.1| cysteinyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 468 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 182/493 (36%), Positives = 254/493 (51%), Gaps = 64/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL---RYYY 61 ++IYNTL R EF ++ P ++MYVCGPTVY + HIGNARPMI FDV+ L RY Sbjct: 3 LQIYNTLTRAKEEFVSLTPGKVKMYVCGPTVYGYIHIGNARPMIFFDVVRSYLENQRY-- 60 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V YV N TD+DDK+I +A + + ++P + + + +D L T Sbjct: 61 ---DVNYVVNFTDVDDKLIRKAEEMNLTVPE------VAEMFIKAYYEDLDGLGIPRATA 111 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR T ++ +I I+++ G AYE+ ++ F T P YG S + I E + G R+ Sbjct: 112 NPRVTENMDVIINFIRDLEQKGFAYESGGDVFFRTHKFPEYGKLSGQNIGELQFGIRIDV 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK + P E W SPWG GRPGWHIECSAMS LG DIHGGG DL Sbjct: 172 DERKEHPEDFVLWKAAKPGEIHWSSPWGEGRPGWHIECSAMSRQLLGDTLDIHGGGQDLQ 231 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHE E+AQS A + A W+HNG++N++G KMSKS GN + + +L K Sbjct: 232 FPHHECEVAQSEAATG-KPLARYWMHNGYINIDGEKMSKSLGNGVLVKDLRAQYK----- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSK--- 344 IR ML THYR P++F+ + + +AE L+ PQ +K Sbjct: 286 --REAIRYFMLSTHYRNPLNFSEETMQQAERSVERISNAANNLRHRLNTAPQGGETKVTP 343 Query: 345 ------GIIDPAVLSALYNDLNTVSAIQALHK--------LARESTKNHDL---LPIFNA 387 I + + +D NT AI A+ + L + T DL L +F Sbjct: 344 EWAEKLETIRNLFHAKMQDDFNTPDAITAVFEWVSEVNALLQQPVTVRGDLEAALQLFEE 403 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +L I + E + IE L+ ER K K ++ AD IR L+++G +LED Sbjct: 404 MNGVLRIALPPE--TELPGEEIEALIAERAEARKAKNWARADEIRDLLDARGIVLED--T 459 Query: 448 PDNGQRMTRWKQK 460 P RW++K Sbjct: 460 PQG----MRWRRK 468 >gi|120610992|ref|YP_970670.1| cysteinyl-tRNA synthetase [Acidovorax citrulli AAC00-1] gi|187629785|sp|A1TPK8|SYC_ACIAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120589456|gb|ABM32896.1| cysteinyl-tRNA synthetase [Acidovorax citrulli AAC00-1] Length = 459 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 166/391 (42%), Positives = 227/391 (58%), Gaps = 35/391 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + +F ++P ++RMYVCG T+YD HIG+AR M+ FDV+ R LR G + Sbjct: 3 LRIYNTLSRAMEDFSPLEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLRSS-GLR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + I+I +T + T +D LA PT + Sbjct: 62 -VTYVRNITDIDDKIIRRA--------VERGITIRQLTDEMTAAMHEDIGALAIEPPTVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ LI + G AY A + ++ + YG S + +DE + G RV Sbjct: 113 PRATEYVPQMLSLIGTLERKGLAYRAGSGDVNYAVRRFEGYGKLSGKSLDELRAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF+LWK + P EP W+SP+G GRPGWHIECSAMS LG+ FDIHGGG Sbjct: 173 QDDKQDPLDFVLWKAAKPGEPPEAKWDSPFGTGRPGWHIECSAMSCATLGESFDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A W+HNGF+ ++ KMSKS GNF TI E+L+ Sbjct: 233 DLQFPHHENEIAQSEGATG-KPLARFWMHNGFVRVDNEKMSKSLGNFFTIREVLQQVD-- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA 350 A +R ++ THYR P++++ L +A L + P+ + DP Sbjct: 290 -----AETLRFFIVRTHYRSPLNYSDVHLQDARASLKRLYTALALVAPEDIGAIDWADPH 344 Query: 351 VL---SALYNDLNTVSAIQALHKLARESTKN 378 +A+ D T A+ L +LA E + Sbjct: 345 AARFKAAMDEDFGTPEAVAVLFELAGEVNRT 375 >gi|221194861|ref|ZP_03567918.1| cysteinyl-tRNA synthetase [Atopobium rimae ATCC 49626] gi|221185765|gb|EEE18155.1| cysteinyl-tRNA synthetase [Atopobium rimae ATCC 49626] Length = 513 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 150/326 (46%), Positives = 195/326 (59%), Gaps = 19/326 (5%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNT + F ID +RMYVCGPTVYD HIGNAR + FDV+ R L + E V Sbjct: 3 VYNTQTHRKETFTPIDEGKVRMYVCGPTVYDQIHIGNARTFLSFDVIRRYLMHAGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+ +N+TD+DDKII RA ++ + + + + F++ R L P +PRAT Sbjct: 61 TFAQNLTDVDDKIINRALEQGRTA------QEVAEEYSSAFIEQMHRFNILDPDIRPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + I M+ +IQ++I G AY + ++ F + NYG S R +D+ + G RV K Sbjct: 115 HEINAMVEMIQSLIDQGFAYAVPSGDVYFSVRADHNYGVLSGRDLDQLRAGERVEVNTEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF LWK + P EP W SPWG GRPGWH EC AM YLG DIHGGG DL+FPHH Sbjct: 175 RDPFDFALWKTAKPGEPSWPSPWGEGRPGWHSECCAMIHRYLGTPIDIHGGGADLVFPHH 234 Query: 246 ENEIAQ-SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 ENE AQ SCC E AN W+H G L +EG KMSKS GNF T+ E+L+ S+ A Sbjct: 235 ENETAQASCCWH--EPLANYWMHAGMLRVEGEKMSKSLGNFYTLKEVLD-------SYSA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA 330 +RL ML THYR +DF+ +RL A Sbjct: 286 DAVRLLMLQTHYRASLDFSFERLDGA 311 >gi|256374515|ref|YP_003098175.1| cysteinyl-tRNA synthetase [Actinosynnema mirum DSM 43827] gi|255918818|gb|ACU34329.1| cysteinyl-tRNA synthetase [Actinosynnema mirum DSM 43827] Length = 464 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 170/476 (35%), Positives = 253/476 (53%), Gaps = 50/476 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + IY+T R++ EF+ +YVCG TV HIG+ R + FDVL R L + Sbjct: 2 SLHIYDTASRELREFRPQISGTASIYVCGATVQGVPHIGHVRSGLNFDVLRRWLARTH-- 59 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V VRN+TDIDDKI+ ++ Q H + A ++ + F L CL PT+ P Sbjct: 60 ERVVLVRNVTDIDDKILVKSAQ-HDRTWWDWAF-----EHERAFDDAYEALGCLPPTYAP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+ QM+ L++ +I GHAY AN ++ F SS P YG S +++DE + G E Sbjct: 114 RATGHVTQMVELMRRLIDAGHAYAANGDVYFSVSSFPEYGKLSGQRVDEVQQGE--SELT 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W +PWG GRPGWH+ECSAM++ YLG FD+HGGG+DLIFP Sbjct: 172 GKRDPRDFTLWKAAKPGEPSWPTPWGDGRPGWHLECSAMATEYLGSTFDVHGGGIDLIFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS + A W+HN ++ L G KMSKS GN ++I +LE + Sbjct: 232 HHENEQAQSRAVG--DGFARYWMHNAWVTLSGEKMSKSLGNTVSIPAMLEQVR------- 282 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTS---TSKGIIDPAVLS 353 AP +R ++ HYR I+++ L EA E L + + + + G + +S Sbjct: 283 APELRYYLVGPHYRSTIEYSPTALDEAVTAYRRIESFLRRVVERTGAVDAGGELGEDFVS 342 Query: 354 ALYNDLNTVSAIQALHKLARES---------TKNHDLLPIFNASAHILGIEVCKEH---- 400 ++ +D+ T A+ A+HK RE T A +LG++ E Sbjct: 343 SMDDDMGTPGALAAVHKRVREGNTALESGDDTGARAAASSVRAMTAVLGLDPLSERWSAS 402 Query: 401 ------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ++ + +++++ +R+ K + F+ AD +R L + G +ED PD Sbjct: 403 AGRESGTSRALKALVDRVLADRVAARKERDFARADALRDSLLAAGIAVED--TPDG 456 >gi|159903756|ref|YP_001551100.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211] gi|159888932|gb|ABX09146.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211] Length = 516 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 187/501 (37%), Positives = 266/501 (53%), Gaps = 76/501 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+ NTL ++ F + P+++ +Y CG TVYD H+G+AR I +DVL R + G K Sbjct: 20 FKLTNTLTQQTEVFNPLKPNHVTIYCCGVTVYDLCHLGHARSYISWDVLRRYF-IWQGYK 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII RA +E N ++ ++ +N ++F KD L L P PR Sbjct: 79 -VTFVQNFTDIDDKIISRAAKE------NSTMNEVSERNIKEFHKDMDSLGILRPDRMPR 131 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I + +IQ++ G AY ++ F PNYG S R + Q++ RV EK Sbjct: 132 ATKCIDGIRSMIQDLEAKGAAYSTEGDVYFAVMRHPNYGKLSGRDLSAQQLNAEGRVTEK 191 Query: 183 --YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK + EP + SPWG GRPGWHIECSAM LG+ DIH GG DL Sbjct: 192 EKARKQHPFDFALWKSAKDGEPSFSSPWGSGRPGWHIECSAMVLQELGETIDIHLGGADL 251 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A +K AN W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 252 VFPHHENEIAQSEAATG-KKLANYWLHNGMVNVGGQKMSKSLGNFTTIRSLLE------E 304 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLS-------KWPQTSTSK 344 A +R +L HYR+P+DFT++ L A I L +WP+ +K Sbjct: 305 GVSAMTLRFFILQAHYRKPLDFTLEGLEAASSGWKGLNTAICLGEVNKNILQWPKHPVNK 364 Query: 345 GI---------------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKN-HDL 381 + + + +DLNT +A+ L +LAR E +N + Sbjct: 365 TTETNSTPTEAREELDHLRQRFIDVMNDDLNTSAAMAVLFELARPLKSIANEIERNPYKQ 424 Query: 382 LPIFNAS------------AHILGI--EVCKEHLNKNISI----AIEKLVQERLILLKMK 423 +P A A++LG+ E+ +E+L++N SI IE+ +++R +++ Sbjct: 425 IPDIKAKKLYARWLTLVELANVLGLQGEMKQENLSRNSSIPNKSVIEEAIKQRSAAKRVR 484 Query: 424 KFSSADYIRKQLESKGFILED 444 + AD IR L+ +G L D Sbjct: 485 NYEKADQIRDDLKKQGIELID 505 >gi|229009599|ref|ZP_04166825.1| Cysteinyl-tRNA synthetase [Bacillus mycoides DSM 2048] gi|229053936|ref|ZP_04195370.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH603] gi|229131097|ref|ZP_04260009.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|229165078|ref|ZP_04292873.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH621] gi|228618341|gb|EEK75371.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH621] gi|228652310|gb|EEL08235.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|228721354|gb|EEL72875.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH603] gi|228751621|gb|EEM01421.1| Cysteinyl-tRNA synthetase [Bacillus mycoides DSM 2048] Length = 449 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 170/471 (36%), Positives = 250/471 (53%), Gaps = 57/471 (12%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I Sbjct: 3 LEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLI 60 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 + A + +P I + + + +D T L C T PR T ++ +I IQ ++ Sbjct: 61 KAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELV 114 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G+AYE+ ++ F T YG S + I + + G R+ K++P DF LWK + Sbjct: 115 NKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEG 174 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + Sbjct: 175 EIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KT 233 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A W+HNG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI Sbjct: 234 FARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPI 286 Query: 321 DFT----------VQRLTEAEILLSKWPQTSTS-----------KGIIDPAVLSALYNDL 359 +F+ ++R+ A L ++ST A A+ +D Sbjct: 287 NFSEDLLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEMEKFQVAFEEAMDDDF 346 Query: 360 NTVSAIQALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIA 408 NT +AI L+ +A + + H + A ILG+E+ +E L + Sbjct: 347 NTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFSILGLELAQEEL---LDEE 403 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+Q+R+ + + F+ +D IR L+ + ILED + TRWK+ Sbjct: 404 IEALIQKRIEARQNRDFALSDQIRDDLKGRNIILED------TAQGTRWKR 448 >gi|209518045|ref|ZP_03266876.1| cysteinyl-tRNA synthetase [Burkholderia sp. H160] gi|209501549|gb|EEA01574.1| cysteinyl-tRNA synthetase [Burkholderia sp. H160] Length = 476 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 177/470 (37%), Positives = 256/470 (54%), Gaps = 45/470 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFDV+ R LR Sbjct: 13 ESLRIYNTLARDKQTFVPLREGVVRMYVCGMTVYDYCHVGHARVMVVFDVVQRWLRTL-- 70 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII+RA + + I +T + +D L P + Sbjct: 71 GYNVTYVRNITDIDDKIIKRA------VENGETIKSLTDRFIAALHEDADALGIARPDIE 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A++ ++ + YG S + +++ + G RV Sbjct: 125 PRATDFIPQMLGMIETLEKNGYAYQASDGDVNYAVRKFEGYGKLSGKSLEDLRAGERVAA 184 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 185 NDAKQDPLDFVLWKQAKPEEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEQFDIHGGGQ 244 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 245 DLQFPHHENEIAQSEAATG-QTFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 298 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L++ T+ D A L Sbjct: 299 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALARL-YTALKDVTPDTAALDWNEAY 355 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--EVCKEHLNK 403 +A+ +D NT A+ L +LA E + D L A +LG+ + +L Sbjct: 356 AQRFQTAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRALGAVLGLLGREPRAYLQH 415 Query: 404 NISIAIEKLVQERLILL---------KMKKFSSADYIRKQLESKGFILED 444 A E ++ I + K +++AD IR +L G LED Sbjct: 416 AAGAAAEGALEPAAIEAKIAARIAAKQAKDYAAADRIRAELLDAGVALED 465 >gi|163847402|ref|YP_001635446.1| cysteinyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525251|ref|YP_002569722.1| cysteinyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] gi|163668691|gb|ABY35057.1| cysteinyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449130|gb|ACM53396.1| cysteinyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] Length = 472 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 255/491 (51%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R++ + I+P +RMYVCG T YD AHIG+A IVFDV+ R L + E Sbjct: 3 IQLYNTLSRRLEPLETIEPGVVRMYVCGVTPYDEAHIGHAMSAIVFDVIRRYLEFRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TDIDDK+I RA + ++ + +F+ + L T PR Sbjct: 62 -VRHIVNFTDIDDKVIARANA------LGQDPLTLSGQYAAEFLAQLQAMNVLPATAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + +P +I +Q +I G+AY + ++ F +YG S R +DE GTR Sbjct: 115 VSTTMPAIIAFVQGLIERGYAYVVDGDVYFRVRRDEDYGKLSGRSLDEMLSGTRFEVDPR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF LWK + P EP WESPWG GRPGWHIECSAM+ +LG DIHGGG DLIFPH Sbjct: 175 KESPADFALWKAARPGEPSWESPWGPGRPGWHIECSAMAMEHLGPQIDIHGGGTDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNL------EGRKMSKSNGNFITINELLETKKFG 298 HENEIAQS + A W+HNG L L + KMSKS GN +TI + L Sbjct: 235 HENEIAQSESLTG-QCFARYWVHNGMLQLVNPQTRQVEKMSKSLGNVVTIADFLS----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTE----AEILLSKW-PQTSTSKGIIDPAV-- 351 + A V RL +L + YR P+ + + + E LLS P T T PAV Sbjct: 289 --RYDADVFRLIVLSSSYRSPLTYNDEVAADNQRKLERLLSALAPATGTVHE--GPAVTA 344 Query: 352 ------------LSALYNDLNTVSAIQALHKL------ARESTKNHDLLPIFNAS----A 389 ++A+ ND N+ +A+ AL L AR++ ++D L I + A Sbjct: 345 LREAAALARERFITAMDNDFNSPAALAALFDLVRAINAARDAGLDNDALAIGQQTLRELA 404 Query: 390 HILGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG+ + IE L++ R L K K+++ AD +R +L G LED Sbjct: 405 GVLGLRLQPRQRTTGAEATPFIELLIEVRSELRKAKQYALADMVRNRLSDLGVTLED--- 461 Query: 448 PDNGQRMTRWK 458 G + TRWK Sbjct: 462 ---GPQGTRWK 469 >gi|257866301|ref|ZP_05645954.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257873183|ref|ZP_05652836.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC10] gi|257800259|gb|EEV29287.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257807347|gb|EEV36169.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC10] Length = 470 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 257/494 (52%), Gaps = 64/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ FQ ++ ++MYVCGPTVY++ HIGN R + FD + R Y Sbjct: 2 IKIYNTLTREKEVFQPLEEKKVKMYVCGPTVYNYIHIGNGRSTVSFDTVRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ + P + + F +DT L T PR Sbjct: 60 TVDYLMNFTDVDDKIIRAAKELGTTAPE------VAERFINAFNEDTAALNVKPATMNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 +HI +I I ++ G+AY N ++ + T +YG S + IDE ++G R+ E+ Sbjct: 114 VMDHIEDIIAFIVALVEKGYAYPVNGDVYYRTRKFAHYGQLSDQSIDELEVGASQRIGEE 173 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKGDEIAWESPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + KT AN W+HNG++ + + KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEA--KTGKTFANYWMHNGYVTIGEDEEKMSKSLGNFVTVHEMV------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKG 345 + V+R + T YR PI ++ L EA+ L K T S Sbjct: 286 -KKVDPQVLRFFLATTQYRRPIKYSETTLHEAQTNLQKLRTTYENAKFRLNSSHYQASDE 344 Query: 346 IIDPAVLS--------ALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFN 386 I+ AVL + +D N + I +++LA+ + L F+ Sbjct: 345 EINAAVLEEFEERFVKEMDDDFNAANGITVVYELAKWLNLASEDPETDLALLAAGLAKFS 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I GI E L + IE+L+ ER+ K K F+ +D IR +L+ +G ILED Sbjct: 405 EWLTIFGIYFVSEEL---LDEEIEQLINERIAARKAKDFARSDQIRDELKEQGIILED-- 459 Query: 447 NPDNGQRMTRWKQK 460 P TRW+++ Sbjct: 460 TPQG----TRWRRE 469 >gi|329666764|gb|AEB92712.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026] Length = 470 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 173/480 (36%), Positives = 256/480 (53%), Gaps = 60/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 1 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARKEHTTV------EKLAERYIKAFMEDTEALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + + + PNYG S + I E + G Sbjct: 113 ATHEIKEIIDFVQDLIDKGFAYEVDGNVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STS 343 + V+R M YR PI+++ L +AE +L ++ T Sbjct: 287 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLDDENERLED 344 Query: 344 KGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-------------PI 384 G+ D + A+ +D N +A+ ++ LA +T N+ L + Sbjct: 345 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLA--TTLNNHLQKDQVDKPALKRAKKL 402 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I G+ +E + IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 403 LIAWLEIFGVSFKEEQAENDDE--IEKLIAQRDEARKNKDWAESDRLRDELQAKGIVIED 460 >gi|304405640|ref|ZP_07387299.1| cysteinyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] gi|304345679|gb|EFM11514.1| cysteinyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] Length = 477 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 179/481 (37%), Positives = 249/481 (51%), Gaps = 57/481 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNT+ R F+ P ++MYVCGPTVYD+ HIGNARP+I FDV+ R L E Sbjct: 3 VSIYNTMTRAQEAFKPQQPGQVKMYVCGPTVYDYIHIGNARPVIFFDVVRRYLEVTGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +A Q ++P A + I + F +D L T PR Sbjct: 62 -VNYIVNFTDVDDKLIRKAEQLGTTVP-EVADTFIAA-----FNEDIEALGVHKATRNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+HIP ++ IQ ++ G AYE+ ++ F T+ YG S + +E ++G R+ Sbjct: 115 VTDHIPLIVSFIQGLVDKGIAYESAGDVYFRTNQFEAYGKLSHQNTEELQLGIRIEIDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL FPH Sbjct: 175 KQHAQDFVLWKSAKPGEIHWSSPWGNGRPGWHIECSAMAREYLGDTLDIHGGGHDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E+AQS + AN W+HNG++++ KMSKS GN IT+ ELL+ K Sbjct: 235 HECEVAQSESLTG-KPLANYWMHNGYVHINNEKMSKSLGNGITVRELLKRTK-------P 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE------------------ILLSK--WPQTSTSK 344 IR +L THYR P++F+ + +AE +L K PQ + + Sbjct: 287 QAIRYFVLATHYRSPLNFSDDTIAQAENSVERIVNCAGNLLHRLSVLGEKPLEPQQAVAA 346 Query: 345 GIIDP--AVLSALY--------NDLNTVSAIQALHKLAREST---KNHDLLPIFNASA-- 389 D A L+A+ +D NT AI AL L E+ + D + Sbjct: 347 SGNDALDARLAAIAGQFAAKMNDDFNTPDAITALFDLVSEANGAMQRQDASAAELQALLA 406 Query: 390 ------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 LG+ + + + IEKL+ ER + K ++ AD IR L + +LE Sbjct: 407 LLEQFDRTLGLLPRADEAGELLDEQIEKLIVERTEARQAKNWARADEIRDLLAADNIVLE 466 Query: 444 D 444 D Sbjct: 467 D 467 >gi|84488953|ref|YP_447185.1| hypothetical protein Msp_0124 [Methanosphaera stadtmanae DSM 3091] gi|84372272|gb|ABC56542.1| CysS [Methanosphaera stadtmanae DSM 3091] Length = 456 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 176/472 (37%), Positives = 265/472 (56%), Gaps = 50/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+Y+T+ R+ E + + + I+++VCGPTVYD++HIG+AR I FDV+ R L++ Sbjct: 2 IKVYSTMTRQKEELKVTN-NKIKLFVCGPTVYDYSHIGHARTYISFDVIVRYLKH--EGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITDIDDKII+RA++ + P+ ++ + ++++KD L R Sbjct: 59 SVFYLQNITDIDDKIIKRAKENNED-PLE-----LSHRFEKEYLKDMETLNVSNVNFYAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ ++I IQ++I G+AY+ + FD S ++G S R +D+ + TR+ Sbjct: 113 ATEHMNEIINQIQDLIDKGYAYDTETGVYFDVSKFEDFGKLSNRNLDDLQ-NTRIQIDST 171 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK+ +P WESPWG GRPGWHIE +A++ Y G +DIHGGGLDLIFPH Sbjct: 172 KKDPKDFALWKKQDE-QPYWESPWGNGRPGWHIEDTAITEAYFGPQYDIHGGGLDLIFPH 230 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+ EIAQ + E W+H GFLN+ G KMSKS GNFITI ELLE Sbjct: 231 HDAEIAQMEASSGKEPLVEYWMHTGFLNVSGEKMSKSLGNFITIKELLEIV-------TP 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE-----------ILLSKWPQTSTSKG-IIDPAV- 351 V R +L THYR PIDF+ L +AE I++ K + + +G ++D + Sbjct: 284 EVYRFFVLSTHYRSPIDFSEDTLKQAENSLKRIQNTGKIIIDKLTEDNLPEGKVLDEDLE 343 Query: 352 ------LSALYNDLNTVSAIQAL----HKLARESTKN-------HDLLPIFNASAHILGI 394 +A+ ND NT A+ L HK+ + + N ++++ F ILG Sbjct: 344 LFKEEFFNAMNNDFNTPIALSNLFDFTHKINKAISSNEVSRNTLNNIVETFKDIESILGF 403 Query: 395 E-VCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ + ++S + ++ E R L K + AD IR +L + LED Sbjct: 404 DIIVEDDMVSDVSGDLLNIITEIREDLRSKKDWDLADKIRDELANLDITLED 455 >gi|229824608|ref|ZP_04450677.1| hypothetical protein GCWU000282_01955 [Catonella morbi ATCC 51271] gi|229785979|gb|EEP22093.1| hypothetical protein GCWU000282_01955 [Catonella morbi ATCC 51271] Length = 480 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 259/493 (52%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ F+ I + YVCGPTVY++ HIGNAR + FD + R +Y + Sbjct: 9 IQVYNTLTRQKEVFRPIKEGQVAFYVCGPTVYNYIHIGNARSAVAFDTIRRYFQYRGYQ- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A E S P I K F +DT +L A T PR Sbjct: 68 -VNYVSNFTDVDDKIIKAAIAE-GSTP-----EAIADKYIAAFKEDTGQLNIQAATVHPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE------QKMGTR 178 +I ++I +Q +I G+AYE+ ++ F T S +YG S + +++ +++ Sbjct: 121 VMENIEEIIAFVQTLIEKGYAYESEGDVYFKTESFKDYGHLSDQSLEDLLVGASERLDQA 180 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V E+ K NP DF LWK + P E W+SPWG GRPGWHIECS M++ YLG DIHGGG Sbjct: 181 VAER--KANPLDFALWKTAKPGEIAWDSPWGPGRPGWHIECSVMATKYLGDTIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETK 295 DL FPHHENEIAQS C A+ W+HNGF+ + + KMSKS GNF+ + +LL Sbjct: 239 DLTFPHHENEIAQSEACTGHT--FAHYWLHNGFVTIGKQDEKMSKSLGNFVLLRDLLA-- 294 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGI 346 ++ VIR + THYR P+ + +TEA+ ++K Q S + Sbjct: 295 -----AYDPMVIRYMLATTHYRRPLRYDEAVITEAQANVNKLREAIRRLKHRQEQASADL 349 Query: 347 ------------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL-------LPIFNA 387 I ++A+ +D N + I AL L + + DL L +++ Sbjct: 350 EGHETWLAEINGIQEQFVTAMDDDFNASNGITALFDLVKSLNRYLDLELVSQVVLSLYDK 409 Query: 388 SAH----ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 H + G+++ E + +I IE L++ER K F+ +D IR QL+ +G +L+ Sbjct: 410 VLHDLLAVFGLDL--EDKSNSIDQEIEALIEERRQARANKDFARSDAIRDQLKEQGILLD 467 Query: 444 DYKNPDNGQRMTR 456 D +R+ R Sbjct: 468 DTPQGTVWKRVNR 480 >gi|86157699|ref|YP_464484.1| cysteinyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C] gi|109894880|sp|Q2IQG7|SYC_ANADE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|85774210|gb|ABC81047.1| cysteinyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C] Length = 481 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 157/374 (41%), Positives = 219/374 (58%), Gaps = 32/374 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++TL + E ++P +R+YVCGPTVYD++H+G+AR +V+DV+ R LR E Sbjct: 3 IQVHDTLTAQKRELVPLEPGKLRLYVCGPTVYDYSHLGHARCYVVWDVVVRHLRARGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII+RA E PI + S+ F +D L L P +PR Sbjct: 62 -VRFVRNFTDVDDKIIQRA-NERGEDPI-----ALASRFADAFHEDMDALGNLRPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + HIP+++ LI ++ G AY N ++ + P YG S+R +D+ G RV Sbjct: 115 VSGHIPEIVALIARLVERGFAYAPGNGDVYYAVRKFPEYGRLSKRNLDDLIAGARVEPGE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM+ +LG D+H GG DL+FP Sbjct: 175 AKRDPLDFALWKAAKPGEPAWDSPWGKGRPGWHIECSAMTQKHLGAPIDLHAGGKDLVFP 234 Query: 244 HHENEIAQSCCAD----RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HH NEIAQS A E A W+HNGF+ ++ KMSKS GNF TI ++L +F G Sbjct: 235 HHTNEIAQSVAATSDGLHAEDFARYWMHNGFVQIDDEKMSKSLGNFFTIRDVL--ARFDG 292 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGI---IDPAV 351 + +R +L THYR +F+ Q L EAE LS +T G+ +PA Sbjct: 293 EA-----LRFFLLGTHYRRDFNFSDQVLAEAERRLSALYETVEKAERLGAGVEPGAEPAF 347 Query: 352 L----SALYNDLNT 361 + +AL +D NT Sbjct: 348 VERARAALDDDFNT 361 >gi|332295578|ref|YP_004437501.1| cysteinyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796] gi|332178681|gb|AEE14370.1| cysteinyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796] Length = 489 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 185/491 (37%), Positives = 262/491 (53%), Gaps = 66/491 (13%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I +YNTL ++ F I+ IRMYVCG TVYD+ H+G+ R +V+DV RL E Sbjct: 5 QIYLYNTLTKRKELFVPIENKKIRMYVCGVTVYDYCHLGHGRSYVVWDVWKRLFLSQGFE 64 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +++N TDIDDKII+R+R+E +T+K + +D +L L T P Sbjct: 65 --VFHIQNFTDIDDKIIKRSREEKVDW------KELTNKFIDAYFEDMDKLNVLRATLYP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT++I +MI +I +I G+AY+A +I+F +YG S + ID+ RV Sbjct: 117 KATDYIDEMIKIITGLIEKGYAYKAGGDIVFSIKKFKDYGKLSGKSIDDLIENYRVDSSS 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P EP W+SP+G+GRPGWHIECSAMS + G FDIH GG DLIFP Sbjct: 177 YKESPLDFVLWKTSKPDEPFWDSPFGKGRPGWHIECSAMSLKHFGSPFDIHAGGQDLIFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS +K N W+HNGF+ + G KMSKS GNF T+ ++ + + Sbjct: 237 HHENEIAQSEGFTG-KKFVNYWLHNGFVTISGEKMSKSLGNFKTLRDIYQ-------QYD 288 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---QTSTSKGIIDPA-------VLS 353 V+RL +L +HYR P+ F ++ L A+ K +S G+I ++ Sbjct: 289 PMVLRLFILSSHYRSPVVFNLENLMAAKEAWDKIKNAIDVCSSFGLIGELKAAPPSNFIA 348 Query: 354 ALYNDLNTVSAIQALHKLAR------ESTKNHDLLPIFNASA----------HILGIE-- 395 AL +DLNT AI + + R +S + NA + ILG++ Sbjct: 349 ALCDDLNTPLAISYIFEKVRFINSIVDSYSKSQAADLKNAISFNINEVLSMIEILGLKYK 408 Query: 396 -----VCKEHLNK----------NISIAIE-------KLVQERLILLKMKKFSSADYIRK 433 KE L+K N+ + E KL+ R L K K + +AD IR Sbjct: 409 PDVLFYSKEQLSKEFDSYELTEVNLELFDELTTENMFKLLSFREFLKKKKLYDNADKIRN 468 Query: 434 QLESKGFILED 444 L KG +LED Sbjct: 469 FLNKKGIVLED 479 >gi|307067211|ref|YP_003876177.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae AP200] gi|306408748|gb|ADM84175.1| Cysteinyl-tRNA synthetase [Streptococcus pneumoniae AP200] Length = 440 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 175/462 (37%), Positives = 242/462 (52%), Gaps = 39/462 (8%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y G K V Y+ Sbjct: 1 MSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR-GYK-VAYIS 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII RAR+E + P + K F +D T L T PR + Sbjct: 59 NFTDVDDKIINRAREEGIT-PQE-----VADKYIAAFREDVTALGVKPATRHPRVVEFMA 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PEKYHKKN 187 +I ++++I G AYE+ ++ F NY + + +++ +G E K+N Sbjct: 113 DIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEETARKEN 172 Query: 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 P DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL FPHH N Sbjct: 173 PVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTN 232 Query: 248 EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVI 307 EIAQS A + AN W+HNGF+N++ KMSKS GNFIT+++ L+T V+ Sbjct: 233 EIAQS-EAKTGKAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT-------LDGQVL 284 Query: 308 RLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPAVL--------SALYN 357 R HYR+PI+FT + + +AE L T G +D L +A+ Sbjct: 285 RFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDE 344 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASA---HILGIEVCKEHLNKNISIAIEKLVQ 414 D N + I + ++ + + + A A I GI +E L+ IE L+Q Sbjct: 345 DFNAANGITVVFEMTKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAE----IEDLIQ 400 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +R + F +AD IR QL ++G L D K +G R TR Sbjct: 401 KRQEARANRDFETADQIRDQLAAQGIKLLDTK---DGVRWTR 439 >gi|259047744|ref|ZP_05738145.1| cysteine--tRNA ligase [Granulicatella adiacens ATCC 49175] gi|259035935|gb|EEW37190.1| cysteine--tRNA ligase [Granulicatella adiacens ATCC 49175] Length = 469 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 170/490 (34%), Positives = 247/490 (50%), Gaps = 55/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ F+ I+ +RMYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IQIYNTLTRQKEAFKPIEEGKVRMYVCGPTVYNYIHIGNARSTVSFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + ++ K + F +DT L T P Sbjct: 61 -VNFVSNFTDVDDKIIRVANETGMTA------EEVSKKYIEAFFEDTNALNVKKATLNPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 N + +I + ++I G AYE+ ++ F T YG S ++I++ +MG T Sbjct: 114 VMNTMDDIIAFVADLIDKGMAYESEGDVYFITEKFEGYGKLSDQRIEDLQMGASNRTASE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K+NP DF LWK + P E W SPWG+GRPGWHIECS M++ +LG DIHGGG DL Sbjct: 174 DDAKKRNPLDFALWKNAKPNEISWNSPWGKGRPGWHIECSVMATKHLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS +K AN W+HN F+ + KMSKS GNF+ +++L++ Sbjct: 234 AFPHHENEIAQSESKTG-KKFANYWMHNAFVTMGEEKMSKSLGNFVLVHDLIQ------- 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------------- 344 V+R + HYR P+ F+ L EA + L K T + Sbjct: 286 QLDPQVLRFFLASAHYRRPLKFSEAALQEAAVNLEKVQTTFKNARYRLETAVDALPEDAE 345 Query: 345 -----GIIDPAVLSALYNDLNTVSAIQALHK--------LARESTKNHDLLPIFNASAHI 391 I+ + +D N + + L++ L +E L + +A + Sbjct: 346 RLAKFAAIEADFQKEMDDDFNAANGMTVLYQWLKEWNVYLEQEVVSKAVLEALLEKAAVL 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 GI E + I+ L++ERL K K F+ +D IR L+ +G +LED P Sbjct: 406 FGIFGIVEKQEALLDDDIQALIEERLEARKAKNFARSDEIRDLLKEQGIVLED--TPQG- 462 Query: 452 QRMTRWKQKP 461 TRW+++ Sbjct: 463 ---TRWRREA 469 >gi|58336686|ref|YP_193271.1| cysteinyl-tRNA synthetase [Lactobacillus acidophilus NCFM] gi|227903247|ref|ZP_04021052.1| cys-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] gi|81311530|sp|Q5FM34|SYC_LACAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58254003|gb|AAV42240.1| cys-tRNA synthetase cycrs [Lactobacillus acidophilus NCFM] gi|227869052|gb|EEJ76473.1| cys-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] Length = 477 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 178/503 (35%), Positives = 264/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRIYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYKGYQ- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKITVPE------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEIKDIINFVKVLIDKGYAYEVDGDVYYRAKKFQHYGELSDQNIEQLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKGPDEIAWDSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTDQKFVNYWMHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------------TSTS 343 R V+R M YR I+++ + L +A +L ++ T TS Sbjct: 290 --RKIDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRIADDTPTKTS 347 Query: 344 KGII------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + ++ + ++A+ +D N +A+ ++ +DLLP+ NA+A+ Sbjct: 348 EDLVKAINETEEKFVAAMDDDFNVQNALTSI----------YDLLPVVNANANSDNVDKD 397 Query: 391 --------------ILGIEV---CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G+++ C + N IE+LV +R K ++++D IR Sbjct: 398 ALKLFEEKLAAWLLVFGVDIKKLCAQTTGSNDE-EIEELVSKRDEARNNKDWATSDQIRD 456 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D G R TR Sbjct: 457 QLKEMGITIQD---TPQGTRWTR 476 >gi|56752435|ref|YP_173136.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 6301] gi|81300471|ref|YP_400679.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 7942] gi|61216122|sp|Q5MZA4|SYC_SYNP6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894954|sp|Q31MM7|SYC_SYNE7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56687394|dbj|BAD80616.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 6301] gi|81169352|gb|ABB57692.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 7942] Length = 478 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 187/494 (37%), Positives = 255/494 (51%), Gaps = 58/494 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ + ++ +Y CG TVYD+ H+G+AR IV+D L R L + G + Sbjct: 3 LSLYNTLTRQKQRFEPLQAGSVSLYCCGVTVYDYCHLGHARSYIVWDTLRRYL-LWLGYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ R+RQE ++ I + TQ + +D RL L PR Sbjct: 62 -VRYVQNFTDIDDKILRRSRQEGTTM------QAIADRYTQAYFEDMARLNILEADDYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--P 180 AT+ + + LI + G AY A+ ++ F +YG S RK+++ K G RV Sbjct: 115 ATHTLDGIQRLIAELEDKGFAYAADGDVYFSVRRFQDYGKLSGRKLEDLKAGASGRVESA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K +P DF LWK + P EP W+SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EESLKHDPFDFALWKAAKPEEPAWDSPWGPGRPGWHIECSAMVRDRLGDSIDIHVGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A W+HNG +N+ G KMSKS GNF TI +LL+ GG Sbjct: 235 VFPHHENEIAQSEAVTG-HPLARYWLHNGMVNVGGEKMSKSLGNFTTIRQLLDE---GGI 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLS------------KWPQTSTSK 344 S V+RL +L +YR+PIDFT + L E L W ++ T Sbjct: 291 S--PMVLRLFVLQANYRKPIDFTDEALQACQNGWETLQEGLHFGEHWGDRLGWTESVTVD 348 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PIFNA 387 + A+ +DLNT +A+ L +LA+E + +LL Sbjct: 349 PDLSDRFRMAMDDDLNTPAALAVLFELAKELRRQQNLLIHEGHLDGDAQQLHQHWVTLVQ 408 Query: 388 SAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A +LG+E E N+ AIE + +R + K F+ AD IR L G L Sbjct: 409 LAGVLGLEAEPELAETNELDEAAIEDWIAKRHAARQAKDFAEADRIRHYLADLGITL--- 465 Query: 446 KNPDNGQRMTRWKQ 459 D +TRW + Sbjct: 466 --IDQAGGITRWSR 477 >gi|75909922|ref|YP_324218.1| cysteinyl-tRNA synthetase [Anabaena variabilis ATCC 29413] gi|109894882|sp|Q3M6R3|SYC_ANAVT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|75703647|gb|ABA23323.1| cysteinyl-tRNA synthetase [Anabaena variabilis ATCC 29413] Length = 486 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 188/507 (37%), Positives = 265/507 (52%), Gaps = 80/507 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ + ++P ++MY CG TVYD+ H+G+AR IV+D + R L + E Sbjct: 3 LTIYNTLTRRQEPLETVEPGKVKMYCCGVTVYDYCHLGHARSYIVWDTIRRYLIWRGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RA+++ ++ ++++ + D RL L PR Sbjct: 62 -VKYIQNFTDIDDKILNRAKEQ------GSTMAEVSNRFIDAYFADIRRLNVLDADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 T HIP++ LIQ + G AY ++ + P+YG S R++++ + G RV Sbjct: 115 VTEHIPEIHQLIQILEEKGLAYAVGGDVYYRVERFPSYGKLSGRELEQMQAGASGRVDVE 174 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P+K H P DF LWK + P EP W+SPWG+GRPGWHIECSAM LG DIHGG Sbjct: 175 DSEPKKQH---PFDFALWKAAKPGEPAWDSPWGQGRPGWHIECSAMIRSKLGATIDIHGG 231 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W HNG + + G+KMSKS GNFITI ELL+ Sbjct: 232 GGDLIFPHHENEIAQSEAAMN-QPLARYWTHNGMVMVNGQKMSKSLGNFITIRELLD--- 287 Query: 297 FGGRSWPA-PV----IRLAMLMTHYREPIDFTVQRLTEAE---------ILLS------- 335 G SW PV +RL +L HYR+P+DFT + + AE +L Sbjct: 288 -GVGSWKGDPVNPMAVRLFVLQAHYRKPLDFTEEAIANAENSWKTLKEGLLFGYQYGEKL 346 Query: 336 KWPQTSTSKGIIDPAVLSALY----NDLNTVSAIQALHKLARESTKNHDLLPIFNAS--- 388 W Q S I P + + +D N + L +LA+E + ++L + Sbjct: 347 GWGQESA----IIPELATRFQELGDDDFNFSGGLAVLFELAKELRREGNILVHEGTTKTP 402 Query: 389 --------------AHILGIEVC--KEHLNK-NIS-IAIEKLVQERLILLKMKKFSSADY 430 +LG+E E L + +S IE L+++R K K FS +D Sbjct: 403 SDELQRQWNTLVTLGKVLGLEATPDDETLTQPGLSDTDIEALIEQRQAARKNKNFSESDR 462 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRW 457 IR +L+++G L D +P TRW Sbjct: 463 IRNELQAQGVTLID--SPQG----TRW 483 >gi|257875920|ref|ZP_05655573.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC20] gi|257810086|gb|EEV38906.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC20] Length = 470 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 179/494 (36%), Positives = 256/494 (51%), Gaps = 64/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ FQ ++ ++MYVCGPTVY++ HIGN R + FD + R Y Sbjct: 2 IKIYNTLTREKEVFQPLEEKKVKMYVCGPTVYNYIHIGNGRSTVSFDTVRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ + P + + F +DT L T PR Sbjct: 60 TVDYLMNFTDVDDKIIRAAKELGTTAPE------VAERFINAFNEDTAALNVKPATMNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 +HI +I I ++ G+AY N ++ + T +YG S + IDE ++G R E+ Sbjct: 114 VMDHIEDIIAFIAALVEKGYAYPVNGDVYYRTRKFAHYGQLSDQSIDELEVGASQRTGEE 173 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKGDEIAWESPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + KT AN W+HNG++ + + KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEA--KTGKTFANYWMHNGYVTIGEDEEKMSKSLGNFVTVHEMV------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKG 345 + V+R + T YR PI ++ L EA+ L K T S Sbjct: 286 -KKVDPQVLRFFLATTQYRRPIKYSETTLHEAQTNLQKLRTTYENAKFRLNSSHYQASDE 344 Query: 346 IIDPAVLS--------ALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFN 386 ++ AVL + +D N + I +++LA+ + L F+ Sbjct: 345 EVNAAVLEEFEERFVKEMDDDFNAANGITVVYELAKWLNLASEDPETDLALLAAGLAKFS 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I GI E L + IE+L+ ER+ K K F+ +D IR +L+ +G ILED Sbjct: 405 EWLTIFGIYFVSEEL---LDEEIEQLINERIAARKAKDFARSDQIRDELKEQGIILED-- 459 Query: 447 NPDNGQRMTRWKQK 460 P TRW+++ Sbjct: 460 TPQG----TRWRRE 469 >gi|325126288|gb|ADY85618.1| Cys-tRNA synthetase cycrs [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 474 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/496 (35%), Positives = 268/496 (54%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEAGAEGTTVPE------LAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 P + +A+ +D N +A+ A+++ A + + L +F Sbjct: 345 PNLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 P + TRW ++ Sbjct: 465 --TP----QGTRWSRE 474 >gi|257064638|ref|YP_003144310.1| cysteinyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476] gi|256792291|gb|ACV22961.1| cysteinyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476] Length = 498 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 149/338 (44%), Positives = 202/338 (59%), Gaps = 22/338 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T + +F I MYVCGPTVY++ HIGNAR I FD++ R L + + Sbjct: 2 IRLYDTQAHQKLDFVPNQEGVIHMYVCGPTVYNYIHIGNARTFISFDIIRRYLMWRGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TD+DDKII++A +E S + + ++ T F++D + L P +P+ Sbjct: 61 -VTFVQNVTDVDDKIIKKANEEGRSA------AEVATEYTDAFIEDMRAMGVLDPDVRPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT I MI L+ +I GHAYE ++ F S P YG S R IDE + G R Sbjct: 114 ATEEIDSMIELVSTLIERGHAYEVEGDVYFSVRSFPEYGKLSHRNIDELEGGHRELRADG 173 Query: 182 ---KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF +WK + P EP W SPWG GRPGWHIECSAMS YLG DIHGGG Sbjct: 174 QGLEDRKRDPLDFAVWKAAKPGEPSWPSPWGEGRPGWHIECSAMSRKYLGLPLDIHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + +N W+H G LN+ G KMSKS GNF+ + ++L+T + Sbjct: 234 DLAFPHHENEIAQSEAAYGV-AFSNHWMHGGMLNINGEKMSKSLGNFLLLRDILKTVE-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 V+R+ M HYR P+DF +R+ EA L + Sbjct: 291 -----PSVLRMFMARAHYRSPLDFNEERVAEAAASLER 323 >gi|256823180|ref|YP_003147143.1| cysteinyl-tRNA synthetase [Kangiella koreensis DSM 16069] gi|256796719|gb|ACV27375.1| cysteinyl-tRNA synthetase [Kangiella koreensis DSM 16069] Length = 465 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 253/491 (51%), Gaps = 62/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN L R+ F+ ++ + MYVCG T YD HIG+AR FDV+ R L++ + Sbjct: 2 LQIYNNLTRQKEPFKPMEEGKVSMYVCGVTTYDLCHIGHARTYAAFDVINRFLKFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + S +T + Q+ +D + P +PR Sbjct: 61 -VTYVRNITDIDDKIINRANEN------GEDFSELTERFIQEMYQDFDAIGLQRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I + Q +I G AY +N ++ F + +YG S++ + + G RV Sbjct: 114 ATQTMDEIIQMTQTLIEKGAAYATDNGDVYFHVPAFKDYGKLSKQDLTQLNAGERVDVND 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 IKKDPMDFALWKSSKPGEPSWDSPWGKGRPGWHIECSAMSKKCLGDTFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA+ A +WIH G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSECANDC-TFARVWIHTGMVQVDKEKMSKSLGNFFTIRDVL-------KQYR 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVL- 352 +R ++ HYR + +T L A+ L + T GI++ A L Sbjct: 286 PESVRYFLMSGHYRSQLSYTQANLESADASLERLYTSLRGVDFNRATDDKLGILEQAQLR 345 Query: 353 --SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI--- 407 A+ +D N A+ L LA+E + L A+A + +++ + L +S+ Sbjct: 346 FTEAMDDDFNVPEAMPVLFDLAKEVNR---LKATDMATAATIAVKI--KELAGVLSLLQQ 400 Query: 408 ------------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 I+ L+Q+RL K + AD IR +L + LED Sbjct: 401 DPESFLKSGAGDSDVSDEDIDSLIQQRLQARADKNWDLADEIRDKLHAMNIELEDAAGG- 459 Query: 450 NGQRMTRWKQK 460 T W++K Sbjct: 460 -----TSWRRK 465 >gi|311029027|ref|ZP_07707117.1| cysteinyl-tRNA synthetase [Bacillus sp. m3-13] Length = 466 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/485 (35%), Positives = 257/485 (52%), Gaps = 52/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ +F ++ ++MYVCGPTVY++ HIGNARP IVFD + R L Y E Sbjct: 3 IHLYNTLTRQKEKFVPLEEGKVKMYVCGPTVYNYIHIGNARPPIVFDTVRRYLEYRGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A++ +P I + + +D + L C T PR Sbjct: 62 -VNYVSNFTDVDDKLIKAAKELGEDVPT------IAERFIAAYHEDVSALGCKQATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ +I G+AYE++ ++ + T YG S + I++ ++GTR+ Sbjct: 115 VTESMDIIIEFIEALIEKGYAYESDGDVYYRTREFKEYGKLSHQPIEDLQLGTRIEVGDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDALDFVLWKAAKEGEIHWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDP----- 349 ++R ML HYR PI++ ++R+ A L + D Sbjct: 287 QLLRFFMLSVHYRHPINYNEELLQSTNNGLERIRTAYANLKHRLDNTVDLATDDTEWVQK 346 Query: 350 ------AVLSALYNDLNTVSAIQALHKLARES-------TKNHDLLPIFNASAHILG--I 394 + + +D NT +AI L +A+++ + +L F A L I Sbjct: 347 VEEFKNEFIKVMDDDFNTANAISVLFDMAKQANLYLNGKNTSEKVLKAFIAQFEELFSVI 406 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 V + + IE L+Q+R+ K + F+ AD IR +L++K ILED + Sbjct: 407 GVSLTAEEELLDEEIESLIQQRIDARKNRDFARADEIRDELKAKNIILED------TAQG 460 Query: 455 TRWKQ 459 TRWK+ Sbjct: 461 TRWKR 465 >gi|269798076|ref|YP_003311976.1| cysteinyl-tRNA synthetase [Veillonella parvula DSM 2008] gi|269094705|gb|ACZ24696.1| cysteinyl-tRNA synthetase [Veillonella parvula DSM 2008] Length = 482 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 176/500 (35%), Positives = 249/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E S I ++ + + L Sbjct: 61 YK-VTYVQNFTDVDDKIINTSNGEGVSW------DTIANRYIDSYFEVMDALGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +IQ +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIEDIITMIQTLIDKGYAYELDGDVYYSVEKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPSVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGACDEAQRLL 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLP----------------IF 385 +A+ +D NT A ++ LA+E + + IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQAVTSREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILGI-EVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G+ E E + E+L+Q R + K+++ AD IR +L G Sbjct: 407 KFMTDVIGVLEKAWEGNTGANAAEYEELMQVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 467 TIED--SPQGA----RWKKR 480 >gi|227555727|ref|ZP_03985774.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HH22] gi|227175132|gb|EEI56104.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HH22] gi|315573949|gb|EFU86140.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0309B] gi|315581900|gb|EFU94091.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0309A] Length = 478 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 260/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|159029961|emb|CAO90340.1| cysS [Microcystis aeruginosa PCC 7806] Length = 480 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/486 (36%), Positives = 260/486 (53%), Gaps = 71/486 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ F + P + MY CG TVYD+ H+G+AR +V+DV+ R L Y G K V Sbjct: 5 LYNTLSRREEPFTPLIPGIVSMYCCGITVYDYCHLGHARTCVVWDVVRRYLEYL-GYK-V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y++N TDIDDKI+ RA+ EH ++ + + K Q + +D +L PRAT Sbjct: 63 RYIQNFTDIDDKILNRAKNEHTTM------AAVAEKFIQAYFEDMAKLGVRPADAYPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG------TRVP 180 + + + L+ + G+AY ++ ++ + +YG S RK+D+ + G T P Sbjct: 117 HTLDGIKRLVYELEQKGYAYPSDGDVYYSVRRFSDYGKLSGRKLDDLQAGASGRVETDDP 176 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH GG DL Sbjct: 177 EAIKKQDPFDFALWKGAKPGEPSWDSPWGQGRPGWHIECSAMVKEQLGETIDIHVGGSDL 236 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + A+ W+HNG + + G KMSKS GNFITI ELL Sbjct: 237 IFPHHENEIAQSEAATG-KPLAHYWLHNGMVKVAGEKMSKSLGNFITIRELLA------- 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--QTSTSKGI-----IDPAVLS 353 + +RL +L YR+PIDF+ + L A + W Q S G +PA+ Sbjct: 289 KYDPLAVRLLILGAQYRKPIDFSDEGLQAA---TNGWHTLQEGLSFGYKHLPPDNPAITD 345 Query: 354 ---------ALYNDLNTVSAIQALHKLARE---------------------STKNHDLLP 383 A+ +D N + L ++A+E + K H L+ Sbjct: 346 QELENRFQEAVNHDFNFAGGLAVLFEIAKELRKEGNNLTHAGKTDSNLAQLAVKWHTLVK 405 Query: 384 IFNASAHILGIEVCKEH----LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESK 438 + + +LG+E+ + +++ IS A IE L+Q+R K K ++ +D IR +L+++ Sbjct: 406 L----SRVLGLEIAADQGETPVSEGISAAEIENLIQQRTEAKKAKNYAESDRIRAELKAQ 461 Query: 439 GFILED 444 G L D Sbjct: 462 GITLID 467 >gi|17545886|ref|NP_519288.1| cysteinyl-tRNA synthetase [Ralstonia solanacearum GMI1000] gi|21264003|sp|Q8Y077|SYC_RALSO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|17428181|emb|CAD14869.1| probable cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum GMI1000] Length = 465 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 257/469 (54%), Gaps = 43/469 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T++ +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGALTNRFIAAMHEDADALGVQRPDRE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGRLQDNGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCDLLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A N W+HNGF+ + KMSKS GNF TI ++L+ Sbjct: 234 DLQFPHHENEIAQSEGASG-STFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVLKV---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPA- 350 + V+R +L +HYR ++++ L +A L++ P + ++ + Sbjct: 289 ---YDPEVVRFFILRSHYRSDLNYSDVHLDDARHALTRLYTALKDVPAEAQARPDWNEPH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEVCKEH--LNK 403 A+++D NT A+ L +LA E T++ L A ++G+ V H L Sbjct: 346 GKRFREAMHDDFNTPVAMAVLFELATEVNKTRSPALASQLAALGGVMGLLVRDPHAFLQG 405 Query: 404 NISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + A +E ++ R + F+ AD IR L + G +LED Sbjct: 406 GVGAAADGLDAAEVEARIEARRAAKAARDFARADGIRADLLAAGIVLED 454 >gi|323339370|ref|ZP_08079655.1| cysteine--tRNA ligase [Lactobacillus ruminis ATCC 25644] gi|323093193|gb|EFZ35780.1| cysteine--tRNA ligase [Lactobacillus ruminis ATCC 25644] Length = 470 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 263/492 (53%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I NTL K F+ ++ ++MYVCGPTVY++ HIGNAR + FD + R Y E Sbjct: 2 IQILNTLSGKKEIFKPLEEGKVKMYVCGPTVYNYIHIGNARSAVAFDTVRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ + + + +T K F +D L T PR Sbjct: 61 -VDYVSNFTDVDDKIIKAGHE------MKMTVKEVTDKFIAAFYEDIDALNIKRATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPE- 181 + + +I IQ +I G+AY++ ++ + +YG S + +D EQ RV + Sbjct: 114 VMDTMDDIIKFIQVLIDKGYAYQSEGDVYYRARKFKDYGKLSGQSVDDLEQGASERVADF 173 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF LWK + P E WE+P+G GRPGWHIECS M++ YLGK DIH GG DL Sbjct: 174 DQGKKEDPLDFALWKAAKPGEIYWEAPFGNGRPGWHIECSVMATKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ +K N W+HNGF+ + E KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQS-EAETGQKFVNYWMHNGFVTIGEEDEKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 + V+R M T YR PI ++ L EA+ L K + + K ++ Sbjct: 287 -KKVDPQVVRFFMATTQYRHPIRYSQANLAEAKTNLQKLKTAVDNLRYRKNDAEKSDVEN 345 Query: 350 AV-----------LSALYNDLNTVSAIQALHKLAR-------ESTKNHD----LLPIFNA 387 + + A+ +D NT + I ++++A+ ++T + + LL F+ Sbjct: 346 EIREKFSALKNRFIEAMDDDFNTQNGIAVIYEMAKLLNVYSEKATVSLETIEYLLDGFSK 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +A + GI+ +E + + IE L++ER+ K + F+ +D IR L+ KG ILED Sbjct: 406 AAEVFGIKFEEE--TELLDEKIEALIEERIAARKARNFAQSDEIRDMLKEKGVILED--T 461 Query: 448 PDNGQRMTRWKQ 459 P TRWK+ Sbjct: 462 PQG----TRWKR 469 >gi|220904715|ref|YP_002480027.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254781675|sp|B8J0S2|SYC_DESDA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219869014|gb|ACL49349.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 483 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 184/497 (37%), Positives = 244/497 (49%), Gaps = 73/497 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ EF + P + MYVCG T YD+ HIG+AR +VFDVL R LR+ + V Sbjct: 3 LYNTLGRQKEEFTPLRPGKVHMYVCGITAYDYCHIGHARSALVFDVLVRQLRHMGLD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+VRN TD+DDKII RA +E + F +D RL +PRAT Sbjct: 61 TFVRNFTDVDDKIINRANKEGLDW------REVAQTYINAFYEDMDRLGVQRADVEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +HI ++ L ++ G AY + ++ F S P YG S R +DE G RV K Sbjct: 115 DHIQEIQDLCAKLVAEGKAYATTSGDVYFRVRSYPPYGKLSGRSLDELLSGARVAPGEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF LWK + P EP WESPWG GRPGWHIECSAMS YL DIHGGG DL+FPHH Sbjct: 175 EDPLDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSESYL--PLDIHGGGQDLVFPHH 232 Query: 246 ENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 ENEIAQ + C + A W+HNGF+ + KMSKS GNF TI ++LE S+ Sbjct: 233 ENEIAQTEAVCHCHL---ARYWVHNGFVQVNAEKMSKSLGNFKTIRDILE-------SYL 282 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILL----------------SKWPQTSTSKGII 347 +R +L HYR PIDFT + + EAE L KW ++ + Sbjct: 283 PETLRFFLLGKHYRSPIDFTAEGMDEAEKALHRVYTALLETQKALTREKWKKSPLPAQLT 342 Query: 348 D------PAVLSALYNDLNTVSAIQAL------------HKLARESTKNHDLLPIFNASA 389 + A+ A+ +DLNT A+ + K R + DLL F A A Sbjct: 343 EDWAAQAEALDEAMNDDLNTAQALGHIFTQVRLVNRLLEDKTLRAAEAGRDLLQDFLARA 402 Query: 390 HILGIEVCKEHLNKNISIA----------------IEKLVQERLILLKMKKFSSADYIRK 433 + +A +E L+QER K F+ +D +R+ Sbjct: 403 EQWNTRLGLFGQQPEAFLADLRRIRAARRNIDIPRVEALLQERQEARANKDFARSDALRQ 462 Query: 434 QLESKGFILEDYKNPDN 450 L G ++D N Sbjct: 463 ALLDLGVSVQDTPEGQN 479 >gi|161528475|ref|YP_001582301.1| cysteinyl-tRNA synthetase [Nitrosopumilus maritimus SCM1] gi|160339776|gb|ABX12863.1| cysteinyl-tRNA synthetase [Nitrosopumilus maritimus SCM1] Length = 462 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 177/456 (38%), Positives = 249/456 (54%), Gaps = 48/456 (10%) Query: 19 QAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77 Q +D S +++Y+CG TVYD +HIG+AR +IVFDVL R L E + +++N TD+DD Sbjct: 12 QELDTSKKVKIYLCGVTVYDESHIGHARTIIVFDVLRRYLEDKGIE--IEFIQNFTDVDD 69 Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KII RA+ E N + I++K + + KD L T+ P+AT HI +I I+ Sbjct: 70 KIINRAQAE------NTSAEAISTKYIENYFKDFDGLNVKHATNYPKATEHIEDIIKFIE 123 Query: 138 NIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS 197 +I AY + N + F S P YG S++KIDE + G R+ K NP DF +WK S Sbjct: 124 KLIEKEIAYVSKNGVYFAVSKFPEYGKLSKKKIDELESGARIEVDEAKNNPLDFAVWKFS 183 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 +EP W+SPWG+GRPGWHIECSAMS+ YLG+ FDIHGGG DLIFPHHENEIAQS Sbjct: 184 -DVEPLWDSPWGKGRPGWHIECSAMSTKYLGENFDIHGGGRDLIFPHHENEIAQSESFTG 242 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + A IW+H G + ++G KMSKS GN +I +LE +W +IRL L HY Sbjct: 243 -NQFAKIWMHVGMVTIDGEKMSKSIGNIKSIKHVLE-------NWGPNIIRLFCLSGHYS 294 Query: 318 EPIDFTVQRLTEAEILLSKWPQTST--------------SKGIIDPAVLS----ALYNDL 359 +PID++ + L E L+KW Q T G I + S AL +D+ Sbjct: 295 KPIDYSEELLKEN---LTKWRQAETCYYELIHANSENSEKVGSIVEKLGSEFDKALEDDV 351 Query: 360 NTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK---------EHLNKNISIAIE 410 NT A+ A +L +E+ + + A I+ E + + + + I+ Sbjct: 352 NTHLALSAFFQLVKEANRLAAEEKLGKEDAKIIKTEFLRMLKILGLNIPEMTEGMKQEID 411 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +++ R + K+F AD IR +L L D+K Sbjct: 412 TMIENREKFRQEKQFQEADQIRDKLNEMNIELIDHK 447 >gi|229547086|ref|ZP_04435811.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|312952479|ref|ZP_07771347.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|229307815|gb|EEN73802.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|310629575|gb|EFQ12858.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|315153507|gb|EFT97523.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0031] gi|315155078|gb|EFT99094.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0043] gi|315158521|gb|EFU02538.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0312] Length = 478 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 260/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KDMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VADRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|228970278|ref|ZP_04130937.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789387|gb|EEM37307.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 440 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 244/464 (52%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKDAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYNPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWP--------QTSTSKGIID-------------PAVLSALYNDLNTVSAIQ 366 L + + +S + D A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAELEKFQTAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + H + A ILG+E+ +E L + IE L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKDRNIILED------TAQGTRWKR 439 >gi|171320751|ref|ZP_02909762.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MEX-5] gi|171094016|gb|EDT39118.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MEX-5] Length = 465 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 175/472 (37%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRALEN------GETIKSLTDRFIGAMHEDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQAGDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D+NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQGTGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALED 454 >gi|307268962|ref|ZP_07550326.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|307287137|ref|ZP_07567208.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|306501735|gb|EFM71026.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|306514770|gb|EFM83321.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|315033512|gb|EFT45444.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0017] gi|315036335|gb|EFT48267.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0027] gi|315165683|gb|EFU09700.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1302] gi|329576209|gb|EGG57727.1| cysteine--tRNA ligase [Enterococcus faecalis TX1467] Length = 478 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 260/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VADRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|126696668|ref|YP_001091554.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301] gi|187629842|sp|A3PDX8|SYC_PROM0 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126543711|gb|ABO17953.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301] Length = 489 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 197/509 (38%), Positives = 267/509 (52%), Gaps = 80/509 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL ++I F+ ID +++Y CG TVYD H+G+AR I +DVL R L Y + Sbjct: 2 IKLFNTLSKRIEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIAWDVLRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E SI + + ++ KN +F KD L + P PR Sbjct: 59 KVKYVQNFTDIDDKILKRAKEE--SISMKE----VSEKNIIEFHKDMDSLGIMRPDSMPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ---KMGTRVPE 181 ATNHI + LI + G+AY + ++ + NYG S + I+EQ + G E Sbjct: 113 ATNHICNICDLITILEDKGYAYSRDGDVYYSVFKNQNYGKLSNQNIEEQNINQQGRMANE 172 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENSKKLNPQDFALWKKAKDDEPFFDSPWGKGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFKTIRELI-------N 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDP--- 349 S +P+ +R ++ +YR+P+DFT + L A + LS T S ID Sbjct: 285 SGISPMTLRYFVMTVNYRKPLDFTEEALRSASEAWKNINVALSFMDLTKGSLNSIDKNEP 344 Query: 350 ------------------AVLSALYNDLNTVSAIQALHKLAR-----------------E 374 AL NDLNT SAI ++ LA+ + Sbjct: 345 IEEEYKEKISFELSQKKLKFSEALGNDLNTASAIAIIYDLAKPLKNFLNQFQRVEGFKID 404 Query: 375 STKNHDLLPIFNA---SAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSA 428 + LL F +LG++ KE L K I I L+ ERL K K ++ A Sbjct: 405 QNEKFFLLENFKTLEKLTEVLGLK--KEVLVKESKITEEEISTLINERLKAKKEKNYAKA 462 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRW 457 D IR L+ KG L D + +T W Sbjct: 463 DEIRSLLKEKGIEL-----IDQSKEITTW 486 >gi|227888795|ref|ZP_04006600.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] gi|227850632|gb|EEJ60718.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] Length = 472 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/480 (35%), Positives = 256/480 (53%), Gaps = 60/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A +EH ++ + + + F++DT L T PR Sbjct: 62 -VNYVSNFTDVDDKMINEAHKEHTTV------EKLAERYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIKEIIDFVQDLIDKGFAYEVDGDVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 175 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQS-EAKTGRKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------QTSTS 343 + V+R M YR PI+++ L +AE +L ++ +T Sbjct: 289 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLNDENETLED 346 Query: 344 KGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-------------PI 384 G+ D + A+ +D N +A+ ++ LA +T N+ L + Sbjct: 347 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLA--TTLNNHLQKDQVDKPALKRAKKL 404 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I G+ +E + IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 405 LIAWLEIFGVSFNEEQAENDDE--IEKLIAQRDEARKNKDWAESDRLRAELQAKGIVIED 462 >gi|205372089|ref|ZP_03224906.1| cysteinyl-tRNA synthetase [Bacillus coahuilensis m4-4] Length = 467 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/489 (34%), Positives = 252/489 (51%), Gaps = 60/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IV+D + R L Y Sbjct: 3 IQLYNTLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRRYLEYR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + +P I + + +DT L C PR Sbjct: 61 AVNFVSNFTDVDDKLIKAANELGEDVPT------IAERFIDAYFEDTAALGCSKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I I ++ G+AYE+ ++ + T YG S + I++ + G R+ Sbjct: 115 VTENIDIIIEFISALMDKGYAYESQGDVYYRTKKFEGYGKLSHQPIEDLQSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E W SP+G+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKAAKEGEIYWSSPFGKGRPGWHIECSAMVRKYLGDTIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KPFAKYWMHNGYINIDNEKMSKSLGNFVLVHDII-------KETDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQ------------RLTEAEILLSKWPQTSTSKGI------ 346 V+R ML HYR PI+++ R T I K + +G Sbjct: 287 QVLRFFMLSVHYRHPINYSADLVENTKTALDRLRTTYQNITYRKESSVNLGEGTEKWVGQ 346 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------IFNASAH 390 + + A+ +D NT +AI L L+++ N+ L+ F Sbjct: 347 IAELKKQFIQAMDDDFNTANAISVLFDLSKQG--NYYLMEENTEVRVLDEFTQTFEELFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+++ E + + IEKL++ER+ K F +D IR +L+ +LED P Sbjct: 405 VLGLKLSGEA--ELLDEEIEKLIEERIQARKNCDFKRSDEIRDKLKEMNIVLED--TPQG 460 Query: 451 GQRMTRWKQ 459 TRWK+ Sbjct: 461 ----TRWKR 465 >gi|239930483|ref|ZP_04687436.1| cysteinyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291438844|ref|ZP_06578234.1| cysteinyl-tRNA synthetase 1 [Streptomyces ghanaensis ATCC 14672] gi|291341739|gb|EFE68695.1| cysteinyl-tRNA synthetase 1 [Streptomyces ghanaensis ATCC 14672] Length = 466 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 252/473 (53%), Gaps = 54/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTSARQIRDFIPLRPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGLE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VTFIRNVTDIDDKIIAKSAEQGRPWWSIG-------YENERAFTDGYHALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +M+ +++ +I GHAYEA+ + F +S P+Y S +++ E + + Sbjct: 114 RATGHITEMVEMMRGLIERGHAYEADGNVYFAVTSFPDYLKLSNQEL-ENLLQPSGEGET 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG VFDIHGGGLDL+FP Sbjct: 173 GKRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGTVFDIHGGGLDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ ++ A W+HN ++ + G KMSKS GN + + E++ + W Sbjct: 233 HHENEIAQAKAYG--DEFARYWVHNAWVTMSGEKMSKSLGNSVLVGEMV-------KRWR 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE-------------ILLSKWPQTSTSKGIIDPA 350 V+R + HYR I+++ + L EAE + L+ P +++ + PA Sbjct: 284 PIVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRTVELAGGPVEPSAE--VPPA 341 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH- 400 A+ +DL A+ +H R+ L A +LG++ H Sbjct: 342 FAEAMDDDLGVPQALAVVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDPHW 401 Query: 401 ---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R K +++AD IR +L G ++ED Sbjct: 402 AGEGDRGEDLHGVVDSLVRLVLDQREAARARKDWATADAIRDRLGQAGLVIED 454 >gi|307284103|ref|ZP_07564273.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|306503474|gb|EFM72723.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|315026628|gb|EFT38560.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2137] Length = 478 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 260/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|307276290|ref|ZP_07557417.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|306507033|gb|EFM76176.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|315149012|gb|EFT93028.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4244] gi|315168265|gb|EFU12282.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1341] Length = 478 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 260/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VADRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|325567615|ref|ZP_08144282.1| cysteine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] gi|325159048|gb|EGC71194.1| cysteine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] Length = 470 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 256/494 (51%), Gaps = 64/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ FQ ++ ++MYVCGPTVY++ HIGN R + FD + R Y Sbjct: 2 IKIYNTLTREKEVFQPLEEKKVKMYVCGPTVYNYIHIGNGRSTVSFDTVRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ + P + + F +DT L T PR Sbjct: 60 TVDYLMNFTDVDDKIIRAAKELGTTAPE------VAERFINAFNEDTAALNVKPATMNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 +HI +I I ++ G+AY N ++ + T +YG S + IDE ++G R E+ Sbjct: 114 VMDHIEDIIAFIAALVEKGYAYPVNGDVYYRTRKFAHYGQLSDQSIDELEVGASQRTGEE 173 Query: 183 YH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKGDEIAWESPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + KT AN W+HNG++ + + KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEA--KTGKTFANYWMHNGYVTIGEDEEKMSKSLGNFVTVHEMV------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKG 345 + V+R + T YR PI ++ L EA+ L K T S Sbjct: 286 -KKVDPQVLRFFLATTQYRRPIKYSETTLHEAQTNLQKLRTTYENAKFRLNSSHYQASDE 344 Query: 346 IIDPAVLS--------ALYNDLNTVSAIQALHKLAR-----ESTKNHDL------LPIFN 386 ++ VL + +D N + I +++LA+ DL L F+ Sbjct: 345 EVNAPVLEEFEERFIKEMDDDFNAANGITVVYELAKWLNLASEDPETDLALLTAGLAKFS 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I GI E L + IE+L+ ER+ K K F+ +D IR +L+ +G ILED Sbjct: 405 EWLTIFGIYFVSEEL---LDEEIEQLINERIAARKAKDFARSDQIRDELKEQGIILED-- 459 Query: 447 NPDNGQRMTRWKQK 460 P TRW+++ Sbjct: 460 TPQG----TRWRRE 469 >gi|116514575|ref|YP_813481.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274693|sp|Q048S9|SYC_LACDB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116093890|gb|ABJ59043.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 474 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 178/496 (35%), Positives = 267/496 (53%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEAGAEGTTVPE------LAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T+ ++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVYDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 P + +A+ +D N +A+ A+++ A + + L +F Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 P + TRW ++ Sbjct: 465 --TP----QGTRWSRE 474 >gi|293382260|ref|ZP_06628200.1| cysteine--tRNA ligase [Enterococcus faecalis R712] gi|293386691|ref|ZP_06631264.1| cysteine--tRNA ligase [Enterococcus faecalis S613] gi|312908762|ref|ZP_07767701.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|312979222|ref|ZP_07790926.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] gi|291080374|gb|EFE17738.1| cysteine--tRNA ligase [Enterococcus faecalis R712] gi|291083860|gb|EFE20823.1| cysteine--tRNA ligase [Enterococcus faecalis S613] gi|310625200|gb|EFQ08483.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|311287987|gb|EFQ66543.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] Length = 478 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 260/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILTFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|332685571|ref|YP_004455345.1| cysteinyl-tRNA synthetase [Melissococcus plutonius ATCC 35311] gi|332369580|dbj|BAK20536.1| cysteinyl-tRNA synthetase [Melissococcus plutonius ATCC 35311] Length = 469 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 180/492 (36%), Positives = 249/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL RK F I+ + +RMYVCGPTVY++ HIGNAR I FD + R L Y Sbjct: 2 ITIYNTLTRKKEPFIPIEENKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TDIDDKII A++ + ++S+ F +D+ L T PR Sbjct: 60 TVNYVSNFTDIDDKIIRAAKE------MKITAEAVSSRFIHAFEEDSNALNIQPATCHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 HIP ++ IQ +I G+AYEA ++ + T YG S + ID+ ++G E Sbjct: 114 VMTHIPDILAFIQQLIEKGYAYEAQGDVYYRTYKFKQYGELSHQSIDDLEIGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG GRPGWHIECS M+ +LG+ DIHGGG DL Sbjct: 174 RSLKEDPLDFALWKKAKPGEISWDSPWGAGRPGWHIECSVMAMKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A + N W+HNG++ + KMSKS GNF+T++EL++T Sbjct: 234 FPHHENEIAQS-EAQSGKTFVNYWMHNGYVTVGENDEKMSKSLGNFVTVHELIQTID--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----------------- 342 V+R M T YR PI ++ + EA L + Sbjct: 290 ----PQVLRFFMSTTQYRHPIHYSQTTIKEAASNLKRLQNAFNNLTFRKNDTLEQLTEDE 345 Query: 343 ----SKGIIDPAVLSALYNDLNTVSAIQALHKLA--------RESTKN---HDLLPIFNA 387 + + + A+ +D NT + I +++LA R++ L F Sbjct: 346 NDLETLNLFKGQFIQAMDDDFNTANGITIVYELAKWMNLYSERKAVSKKVIEKTLTYFTQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L I I++L+ ER K F +D IR L +G +LED K Sbjct: 406 WLAIFGIFFSSEVL---IDQDIDQLINEREQARKEGNFGRSDEIRDLLNQQGIVLEDTK- 461 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 462 -----QGTRWRR 468 >gi|218245339|ref|YP_002370710.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8801] gi|226735051|sp|B7JUH4|SYC_CYAP8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218165817|gb|ACK64554.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8801] Length = 484 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 260/487 (53%), Gaps = 63/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ + ++ IRMY CG TVYD+ H+G+AR +V+DV+ R L++ E Sbjct: 3 LTVYNTLTRRKEPLETLETGKIRMYCCGITVYDYCHLGHARTCMVWDVVRRYLQWRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RARQE ++ ++ + + + +D L PR Sbjct: 62 -VQYIQNFTDIDDKILNRARQEGTTM------EAVSDRFIEAYFEDMEHLHVQKADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + L+ + G+AY++N ++ + +YG S RK+++ + G RV Sbjct: 115 ATHTLNGIKRLVSELEAKGYAYQSNGDVYYSVRHFKDYGKLSGRKLEDLQAGASGRVEVQ 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DPEAAKKKDPFDFAVWKAAKPGEPSWDSPWGQGRPGWHIECSAMVRERLGETIDIHVGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNG + +EG KMSKS GNFITI +LL+ Sbjct: 235 DLIFPHHENEIAQSEAATG-KPLARYWLHNGMVKVEGEKMSKSLGNFITIRDLLDKVD-- 291 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------------------EILLSKWPQ 339 +RL +L HYR+P+DFT + L A ++ + P Sbjct: 292 -----PMAMRLFILQAHYRKPVDFTDEALEAATNGWHTLKEGLLFGYNHGKQLNFTASPP 346 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS----------- 388 + + A+ +D N + L ++A+E K ++L + Sbjct: 347 HPLTSSPLTQRFQQAVDDDFNFAGGLAILFEIAKELRKEGNILVHQGQTETSPQVLEEQW 406 Query: 389 ------AHILGIEV----CKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLES 437 A +LG+E +E + +S A IE+L+++R I + K ++ D +R +L++ Sbjct: 407 RTLVELAGVLGLETDISEVQEAVGNGLSDAEIEELIEQRKIARQNKNYAEGDRLRDELKN 466 Query: 438 KGFILED 444 +G IL D Sbjct: 467 QGIILVD 473 >gi|229003104|ref|ZP_04160954.1| Cysteinyl-tRNA synthetase [Bacillus mycoides Rock1-4] gi|228758150|gb|EEM07345.1| Cysteinyl-tRNA synthetase [Bacillus mycoides Rock1-4] Length = 440 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 246/464 (53%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I I+ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIEELVKKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ + T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYYKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT---- 323 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYNPQLIRFFMLSVHYRHPINFSEELL 284 Query: 324 ------VQRLTEAEILLSKWPQTSTS-----------KGIIDPAVLSALYNDLNTVSAIQ 366 ++R+ A L ++ST A +A+ +D NT +A+ Sbjct: 285 QNTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEMKKFQVAFEAAMDDDFNTANAVT 344 Query: 367 ALHKLARESTK----NHDLLPIFNASAH-------ILGIEVCKEHLNKNISIAIEKLVQE 415 L+ LA + + H + A ILG+E+ KE L + IE L+Q+ Sbjct: 345 ELYNLANHANQYLLEEHTSKAVLEAYVKQFETLFGILGLELTKEEL---LDEEIEVLIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILED------TAQGTRWKR 439 >gi|313904851|ref|ZP_07838223.1| cysteinyl-tRNA synthetase [Eubacterium cellulosolvens 6] gi|313470284|gb|EFR65614.1| cysteinyl-tRNA synthetase [Eubacterium cellulosolvens 6] Length = 496 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 183/504 (36%), Positives = 257/504 (50%), Gaps = 80/504 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNT+ + I EF+ I + MYVCGPTVY+ HIGNARPMIVFD R + Y G + Sbjct: 3 LRFYNTMTKSIQEFKPIREGEVSMYVCGPTVYNLIHIGNARPMIVFDTARRYMEYK-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + +I+ + ++ +KD + L T P Sbjct: 62 -VNYVSNFTDVDDKIIKKANEEGVTS------EVISQRYIKETMKDMADMNVLPATTHPL 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI LI+++ G+AYE N + F T YG S + +D+ + G R V Sbjct: 115 ATEEIGGMIELIRDLQEKGYAYEVNGTVYFRTRKDEKYGKLSHKNLDDLRSGFRDLKVSG 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDL 240 + K++P DF+LWK P EP WESPWG+GRPGWH EC MS YL DIH GG DL Sbjct: 175 EDQKEDPLDFVLWKPKKPGEPFWESPWGQGRPGWHTECCVMSRKYLHSTTIDIHAGGEDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ C+ E+ A+ W+HN FLN++ KMSKS GNF T+ E+ G Sbjct: 235 IFPHHENEIAQVECSTG-EEFAHYWLHNAFLNIDNVKMSKSLGNFRTVREI-------GD 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------WPQTST--- 342 + ++R ML HYR ++F+ + + A+ L + Q T Sbjct: 287 HYDLQILRFFMLSAHYRRVLNFSTESMEAAKASLGRIRTAVKTLGDRAKAAAAQDLTDHE 346 Query: 343 -------SKGIIDP---------AVL--------------SALYNDLNTVSAIQALHKLA 372 +KG + P VL A+ +DLNT A A+ L Sbjct: 347 RTRLGIDAKGEVIPFEVTADSVTGVLVKPDDMRAFRYDFEQAMDDDLNTADAEAAIFNLV 406 Query: 373 R----ESTKNHDLLPIFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLILLKM 422 R E +N F + +E+C + +++ IE+L+ +R K Sbjct: 407 RFANIEVQENSS--KAFAEAVKTEIMELCGILGLIVDVKEEDLDAEIEELIAKRQAARKA 464 Query: 423 KKFSSADYIRKQLESKGFILEDYK 446 K F+ AD IR +L +KG L+D + Sbjct: 465 KDFAMADAIRDELLAKGIALKDTR 488 >gi|221214717|ref|ZP_03587686.1| cysteinyl-tRNA synthetase [Burkholderia multivorans CGD1] gi|221165256|gb|EED97733.1| cysteinyl-tRNA synthetase [Burkholderia multivorans CGD1] Length = 465 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 166/398 (41%), Positives = 231/398 (58%), Gaps = 38/398 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIDAMHEDEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIERLEANGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPEGASWESKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWLHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARE--STKNHDL 381 +A+ +D NT AI L +LA E T+N L Sbjct: 343 PHAQRFAAAMNDDFNTPVAIATLFELAGEVNRTRNASL 380 >gi|229159263|ref|ZP_04287287.1| Cysteinyl-tRNA synthetase [Bacillus cereus R309803] gi|228624155|gb|EEK80957.1| Cysteinyl-tRNA synthetase [Bacillus cereus R309803] Length = 440 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 244/464 (52%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWP--------QTSTSKGIID-------------PAVLSALYNDLNTVSAIQ 366 L + + +S + D A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEMEKFQAAFEEAMDDDFNTANAIT 344 Query: 367 ALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + H + A ILG+E+ +E L + IE L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSKIVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILED------TAQGTRWKR 439 >gi|182414301|ref|YP_001819367.1| cysteinyl-tRNA synthetase [Opitutus terrae PB90-1] gi|254781688|sp|B1ZSX8|SYC_OPITP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|177841515|gb|ACB75767.1| cysteinyl-tRNA synthetase [Opitutus terrae PB90-1] Length = 457 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 170/460 (36%), Positives = 262/460 (56%), Gaps = 31/460 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K++++L R + E Q P + R Y CGPTVY AHIGN R +V D+L R+L +G Sbjct: 3 LKLFDSLTRNLRELQPSHPDGVFRFYNCGPTVYAPAHIGNFRTFVVNDILRRMLELEFGA 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TD+DDK I+RAR E P+ D +T + T +F D L CL P +P Sbjct: 63 PKVKHVRNLTDVDDKTIKRARDE--GRPLAD----VTRQWTDKFHADCAALNCLPPHIEP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 AT HI + + +I ++ G+AY A + + F SS +YG SR K E ++G+ + K Sbjct: 117 TATGHIREQVDMIDCLMQKGNAYRAADGSVYFKVSSFSDYGRLSRVKERELQIGSALAGK 176 Query: 183 YH------KKNPADFILWKRSTP--MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 K++ +DF LWK P E W+SPWGRGRPGWHIECSAMS +LG+ D+H Sbjct: 177 SQAVDADEKEDGSDFALWKAHKPDDGENSWDSPWGRGRPGWHIECSAMSKKHLGETIDLH 236 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GG+DL+FPHHENEIAQS C + ++ + + W H+ L ++G+KMSKS GN T+++L + Sbjct: 237 TGGVDLLFPHHENEIAQSECCNGVQFSRH-WYHSEHLLVDGKKMSKSLGNLYTLDDLKQ- 294 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---KWPQTSTSKGI---ID 348 + + +R A+L H R+ ++FT+ L AE L+ + T + G + Sbjct: 295 -----KGFSPMAVRYALLSGHPRKQLNFTLDSLHAAEKALATLRAYRATLAAGGAAHHVF 349 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK-NISI 407 V++AL +DLNT +A+ AL + D + F+ LG+++ K + Sbjct: 350 APVIAALEDDLNTPAALGALFTIVNRGKGEAD-VESFDRVMFALGLKLDAPTAPKAEVPA 408 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + L ++R + K F++AD +RK++ + G+ + D K+ Sbjct: 409 EVTALAEKRWAAKQAKDFATADALRKEIAAAGWSMLDRKD 448 >gi|170079458|ref|YP_001736096.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7002] gi|229558794|sp|B1XND1|SYC_SYNP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169887127|gb|ACB00841.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7002] Length = 472 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 179/475 (37%), Positives = 248/475 (52%), Gaps = 51/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ ++ + +RMY CG TVYD+ H+G+AR +++DV+ R L++ E Sbjct: 3 LSLYNTLHRRSEPFEPLEANLVRMYCCGITVYDYCHLGHARTCLIWDVVRRYLQWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RAR E S+ I K + + +D L PR Sbjct: 62 -VHYIQNFTDIDDKILNRARAEKSSM------GAIAEKFIEAYFEDMEALHIQPADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LI ++ G AY + ++ + YG S RK+D+ + G RV Sbjct: 115 ATHSLDGIQKLIHDLEQRGFAYASQGDVYYAVRKFDGYGKLSGRKLDDMQAGASGRVNED 174 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P+ K +P DF LWK + EP W+SPWG GRPGWHIECSAM LG+ DIH GG D Sbjct: 175 PDAPKKHDPFDFALWKAAKAGEPAWDSPWGAGRPGWHIECSAMVRDRLGETIDIHVGGSD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A + A W+HNG + +EG KMSKS GNFITI ELL Sbjct: 235 LIFPHHENEIAQSEAATG-QPLAKYWLHNGMVKVEGEKMSKSLGNFITIRELL------- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSKGIIDPAV 351 + + +RL +L HY +P+DFT + LT A + LL T+ D + Sbjct: 287 KKYDPMAVRLFILQAHYTKPLDFTDEALTAATKGWETLNDALLFGAEHLDTNNITADKGI 346 Query: 352 LSALY----NDLNTVSAIQALHKLARESTKNHDLL---------PIFNAS--------AH 390 L+ NDLN + L +LA+E K ++L P AS A Sbjct: 347 LAKFKAIVDNDLNFSGGLAILFELAKELKKEKNILVHEGKLQQNPQILASLWLTLKELAD 406 Query: 391 ILG-IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ILG + K+ IE L+Q+R K ++ D +R L KG +L D Sbjct: 407 ILGFVPETKQQAAGLTDAEIEDLIQQRKDARANKNYAEGDRLRDLLAEKGIVLVD 461 >gi|28212192|ref|NP_783136.1| cysteinyl-tRNA synthetase [Clostridium tetani E88] gi|61216342|sp|Q890M4|SYC_CLOTE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28204636|gb|AAO37073.1| cysteinyl-tRNA synthetase [Clostridium tetani E88] Length = 465 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 173/474 (36%), Positives = 244/474 (51%), Gaps = 53/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF + + MYVCGPTVY+F HIGN R IVFD + R L Y G K Sbjct: 1 MKLYNTLTRQKEEFIPLKTGEVNMYVCGPTVYNFFHIGNGRTFIVFDTVRRYLEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA E ++ + + ++ KD L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKRANDEGITV------KELGERFIGEYYKDADSLNIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 113 ATEFMEEIIQFVKELVDKGYAYEIDGDVYFHTKRFNEYGKLSGQNIEDLQAGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+ DF +WK+ P EP WESPWG GRPGWHIECS M+ + LG DIH GG DLIFPH Sbjct: 173 KKDAMDFAIWKKQKPGEPAWESPWGMGRPGWHIECSCMAHNLLGDTIDIHAGGHDLIFPH 232 Query: 245 HENEIAQSCCADRIEK-TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS C R K A W+H+ FLN++ +KMSKS NF T E+LE + Sbjct: 233 HENEIAQSEC--RTGKPFAKYWMHSAFLNIDNKKMSKSLNNFFTAREILE-------KYD 283 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPA--- 350 A V+RL ML HYR ++F+ V+RL A L + + Sbjct: 284 ADVVRLFMLSAHYRAQLNFSEELLQSAMSAVERLYNAIYNLENLANEVKRNDLNEEEKKY 343 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAH 390 + + +D NT AI + + R+ N L I Sbjct: 344 IKKLDEYREKYIEKMDDDFNTADAIAVIFDMIRDINSNVKSDSSKKIIEYALSIIRELGS 403 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 LGI ++ +++ I++L+ R K ++ AD IR L+ +G +LED Sbjct: 404 PLGI--LQKSTEESVEDEIQQLIDRREKARTEKNWALADEIRDGLKERGILLED 455 >gi|225871262|ref|YP_002747209.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] gi|225700666|emb|CAW95246.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] Length = 447 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 243/459 (52%), Gaps = 38/459 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPITDKVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--AGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ S P A I + F++DT L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAKESGVS-PKELADRFIAA-----FMEDTKALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I I +I G+AYE+ +I F + NY + + I + + G E Sbjct: 114 VMDYMDEIIAFIAALIKKGYAYESAGDIYFRVAKASNYARLANKTIADLEAGASGRTDTE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W SPW GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKEDPLDFALWKSAKLGEISWASPWSAGRPGWHIECSVMATELLGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 234 FPHHTNEIAQSEA--KTSKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSKGIIDPAVL-- 352 +R + HYR+PI+FT + + +A + L + P +T+ A + Sbjct: 288 ---GQTLRFFLATQHYRKPINFTEKAIHDAGVNLKYLKNTLQQPTVATADASQLAAFITA 344 Query: 353 --SALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + I L +A+ + + F + GI E L+ Sbjct: 345 FKAAMNDDFNTANGITVLFDMAKWINSGAYSEAVKSAFEEMLAVFGIVFEAESLDTE--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 IE+L+ ER + F+ AD IR QL ++G L D K Sbjct: 402 -IEQLIAERQEARANRDFARADAIRDQLAAQGIKLLDTK 439 >gi|307154328|ref|YP_003889712.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7822] gi|306984556|gb|ADN16437.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7822] Length = 480 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 180/497 (36%), Positives = 258/497 (51%), Gaps = 65/497 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ FQ I+P +RMY CG TVYD+ H+G+AR +V+DV+ R L++ + Sbjct: 3 LTIYNTLTRRKEPFQPIEPGKVRMYCCGITVYDYCHLGHARTCVVWDVVRRYLQWRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RA++E S+ ++ + + + +D RL PR Sbjct: 62 -VKYIQNFTDIDDKILNRAKKEGTSM------EEVSERFIKAYFEDMDRLHIEKADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + L+ + G+AY A+ ++ + +YG S RK+++ + G RV Sbjct: 115 ATHTLDGIKRLVYELEQKGYAYAADGDVYYSVRRFADYGKLSGRKLEDLQAGASGRVELE 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF LWK + EP WESPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DPETQKKKDPFDFALWKAAKAGEPSWESPWGEGRPGWHIECSAMVRERLGETIDIHVGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI +LL+ + Sbjct: 235 DLIFPHHENEIAQSEAATG-QPLARYWMHNGMVKVGGDKMSKSLGNFTTIRDLLDKVE-- 291 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTV----------QRLTEAEILLSKWPQT---STSKG 345 V+RL +L THYR P+DFT Q L E + + + G Sbjct: 292 -----PMVVRLFILQTHYRNPVDFTEKAIDAASNGWQTLQEGLLFGHHYGEKLAWDDLPG 346 Query: 346 IIDPAVLSA----LYNDLNTVSAIQALHKLARESTKNHDLL-----------------PI 384 P ++ + +D N + L +LA+E K ++L Sbjct: 347 ATVPELVQKYREIVDDDFNFAGGLAVLFELAKELRKEGNILVHQGKTDTSPEKLKAQWQT 406 Query: 385 FNASAHILGIEVCK---EHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 + +LG+E E +S A IE L+++R K K F+ D IR +L++ G Sbjct: 407 LVELSQVLGLEAIAAQPEQETTGLSDADIEALIEQRAQARKAKNFAEGDRIRDELKANGI 466 Query: 441 ILEDYKNPDNGQRMTRW 457 L D G +T+W Sbjct: 467 TL-----IDAGGGVTKW 478 >gi|315174139|gb|EFU18156.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1346] Length = 478 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/495 (35%), Positives = 256/495 (51%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPI 384 ++ ++ + +D N + I +++LA+ + + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQAAVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 FN I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FNGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|119872615|ref|YP_930622.1| cysteinyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184] gi|189082073|sp|A1RTJ7|SYC_PYRIL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119674023|gb|ABL88279.1| cysteinyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184] Length = 473 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 177/474 (37%), Positives = 252/474 (53%), Gaps = 44/474 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R++ EF P R YVCG T YD H+G+ R + FD+ R L E Sbjct: 1 MRIYNTATRQVEEFTTYVPRLARGYVCGITPYDHMHVGHGRVYVFFDIFRRYLERLGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RA++E I + ++ + T +L PR Sbjct: 60 -VRLVINFTDIDDKIINRAKEEFGHEAYKRWREI-PERYIAEYFEMTKKLYIKPAYAYPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T ++ M+ I ++ G+AY A + + F+ + +PNYG SR+KI+E G RV + Sbjct: 118 VTENVEDMVKWISTLVEKGYAYVAPDGSVYFEVAKVPNYGVLSRQKIEELVAGARVEPEP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK TP EP W+SPW GRPGWH+EC MS+ +LG FD HGGG DLIFP Sbjct: 178 GKRNPLDFALWKSWTPGEPWWDSPWCPGRPGWHLECVVMSTKHLGAPFDFHGGGADLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIA + ++ A WIH G+L + G KMSKS GN IT+ E+L K G + Sbjct: 238 HHENEIAIARAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNIITLREVL--SKHSGEA-- 293 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTS---KGIID-------- 348 +RLA M+HYR+P++FT + L +AE L + + + S + G D Sbjct: 294 ---LRLAYAMSHYRKPMEFTYELLQQAEDMAKTLYTAYDELSQALRDAGEKDQEPLAQEA 350 Query: 349 ----PAVLSALYNDLNTVSAIQALHKLAR----------ESTKNHDLLPIFN---ASAHI 391 A AL +D++T A+Q L+ +AR E L I N A + Sbjct: 351 LKYAEAFYGALDDDMSTPEAVQQLYGMARYIISTVLHKIEKISRETALTILNKYVEMADV 410 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 LG+ + + + K + ++ LV+ R L + +++ ADYIR++L G L D+ Sbjct: 411 LGV-LERRQIPKELEEVVKTLVEVRAKLRQERQYQLADYIRQRLAELGVELHDF 463 >gi|255971591|ref|ZP_05422177.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T1] gi|257421384|ref|ZP_05598374.1| cysteinyl-tRNA synthetase [Enterococcus faecalis X98] gi|255962609|gb|EET95085.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T1] gi|257163208|gb|EEU93168.1| cysteinyl-tRNA synthetase [Enterococcus faecalis X98] gi|323479282|gb|ADX78721.1| cysteinyl-tRNA synthetase [Enterococcus faecalis 62] Length = 470 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VADRFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|256956971|ref|ZP_05561142.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DS5] gi|257078648|ref|ZP_05573009.1| cysteinyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294780003|ref|ZP_06745382.1| cysteine--tRNA ligase [Enterococcus faecalis PC1.1] gi|256947467|gb|EEU64099.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DS5] gi|256986678|gb|EEU73980.1| cysteinyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294452897|gb|EFG21320.1| cysteine--tRNA ligase [Enterococcus faecalis PC1.1] Length = 470 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VADRFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|238618570|ref|YP_002913395.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus M.16.4] gi|238379639|gb|ACR40727.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus M.16.4] Length = 470 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 176/488 (36%), Positives = 258/488 (52%), Gaps = 66/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I+IYN+L RK+ EF I+P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRIYNSLGRKLEEFNTINPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII+++R + I + T+ ++ ++L Sbjct: 60 -KGYTVIRVQNITDIDDKIIKKSRD------TGKDWNEIVNYYTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T+HI ++I +Q +I GHAY A + + FD + P+YG S K +E G Sbjct: 113 H-PRVTHHIKEIINFVQKLIDKGHAYVAPSGSVYFDVDTYPDYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ EK + W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LVFPHHENERAQTEALTG-EKWVSYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDP--------- 349 + W V+R L +HYR PIDF+ + L +A+ L + + + + II Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIKDSMAIIRNIISEGPKFYAKDD 341 Query: 350 -------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 + +A+ ND +T +A+ +H++ R + S LG + Sbjct: 342 DIKVYREILNNLDSFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLGAML 395 Query: 397 CKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E L++ + I+ +V R L +MK + +D IR++L G Sbjct: 396 AFEALSQFNEVFGVMDEEFYPTYDKMYKVIDAVVDIRNQLRQMKLYEISDKIREELLKAG 455 Query: 440 FILEDYKN 447 + D K+ Sbjct: 456 VRILDSKD 463 >gi|221124448|ref|XP_002165201.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 458 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 181/463 (39%), Positives = 250/463 (53%), Gaps = 41/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R + F I+P ++RMYVCG T+YD HIG+AR M+ FDV+ R L+ + Sbjct: 3 LRIFNTLTRSLQPFTPIEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGMQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T + D L P+ +PR Sbjct: 62 -VTYVRNITDIDDKIIRRAVERGITI------RQLTDEMIAAMHADIGALHIEPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ LI + G AY A+N ++ + YG S + +DE + G RV Sbjct: 115 ATEYVPQMLSLIGELEAKGLAYRASNGDVNYSVRKFEGYGKLSGKSLDELRAGERVAVLD 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP WES +G GRPGWHIECSAMS LG FDIHGGG DL Sbjct: 175 GKEDPLDFVLWKSAKPEEPPEAKWESVFGTGRPGWHIECSAMSCATLGTTFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN W+HNGF+ ++ KMSKS GNF TI ++L R Sbjct: 235 QFPHHENEIAQSEGAHG-QALANFWMHNGFVRVDNEKMSKSLGNFFTIRDVL-------R 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVL- 352 + A +R ++ HYR ++++ L +A LS+ T S +P Sbjct: 287 QYDAETVRFFIVRAHYRSALNYSDAHLDDARQALKRLYTALSQVQATDISIDWSNPFAAR 346 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVCKEHLNKNI 405 +A+ D T A+ L LA E S + LL A +L + +L Sbjct: 347 FKAAMDEDFGTPEAVAVLFDLAGEVNRSKSVEAASLLKALGACLGLLQAD-ANAYLQSGA 405 Query: 406 SIAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILED 444 + E +Q+R+ K F+ AD IRK L ++G +L+D Sbjct: 406 GLD-EATIQQRIADRAAAKAAKDFALADAIRKDLLAQGIVLKD 447 >gi|29830510|ref|NP_825144.1| cysteinyl-tRNA synthetase [Streptomyces avermitilis MA-4680] gi|61216621|sp|Q82GD0|SYC_STRAW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29607622|dbj|BAC71679.1| putative cysteinyl-tRNA synthetase [Streptomyces avermitilis MA-4680] Length = 466 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 250/470 (53%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTSARQIRDFTPLLPGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKII ++ I +N + F L CL PT++PR Sbjct: 62 -VTFIRNVTDIDDKIIAKSADH------GRPWWAIGYENERAFNDGYDVLGCLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +M+ +++ +I GHAYEA+ + FD S P Y S +++D + E Sbjct: 115 ATGHITEMVEMMRTLIERGHAYEADGNVYFDVRSFPEYLQLSNQELDNLLQPSGEGET-G 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDLIFPH Sbjct: 174 KRDPRDFAMWKAAKPGEPTWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGLDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 234 HENEIAQAKAFG--DEFARYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KQWRP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK--GIID------PAVLS 353 V+R + HYR I+++ + L EAE ++ + Q K G+++ PA Sbjct: 285 IVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVVEKAGGVVEPSPEVPPAFAE 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCK------ 398 A+ +DL A+ +H R+ L A +LG++ Sbjct: 345 AMDDDLGVPQALAIVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDPQWAGE 404 Query: 399 ----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++ +R K +++AD IR QL G ++ED Sbjct: 405 GDRGEDLHGVVDTLVRMVLDQREAARARKDWATADAIRDQLNQSGLVIED 454 >gi|17228587|ref|NP_485135.1| cysteinyl-tRNA synthetase [Nostoc sp. PCC 7120] gi|21264005|sp|Q8YXW5|SYC_ANASP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|17130438|dbj|BAB73049.1| cysteinyl-tRNA synthetase [Nostoc sp. PCC 7120] Length = 486 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 187/508 (36%), Positives = 265/508 (52%), Gaps = 82/508 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 + IYNTL R+ + ++P ++MY CG TVYD+ H+G+AR IV+D + R L + +G Sbjct: 3 LTIYNTLTRRQEPLETVEPGKVKMYCCGVTVYDYCHLGHARSYIVWDTIRRYLIWRGFG- 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y++N TDIDDKI+ RA+++ ++ + ++++ + D RL L P Sbjct: 62 --VKYIQNFTDIDDKILNRAKEQGLTM------AEVSNRFIDAYFADIRRLNVLDADEYP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV-- 179 R T HIP++ LIQ + G AY ++ + P+YG S R++++ + G RV Sbjct: 114 RVTEHIPEIHQLIQILEEKGLAYAVGGDVYYRVERFPSYGKLSGRELEQMQAGASGRVDA 173 Query: 180 ----PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 P+K H P DF LWK + P EP W+SPWG GRPGWHIECSAM LG DIHG Sbjct: 174 EDSEPKKQH---PFDFALWKAAKPGEPAWDSPWGAGRPGWHIECSAMIRSKLGATIDIHG 230 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHHENEIAQS A + A W HNG + + G+KMSKS GNFITI ELL+ Sbjct: 231 GGGDLIFPHHENEIAQSEAAMN-QPLARYWTHNGMVMVNGQKMSKSLGNFITIRELLD-- 287 Query: 296 KFGGRSWPA-PV----IRLAMLMTHYREPIDFTVQRLTEAE---------ILLS------ 335 G SW PV +RL +L HYR+P+DFT + + AE +L Sbjct: 288 --GVGSWKEDPVNPMAVRLFVLQAHYRKPLDFTEEAIATAENSWKTLKEGLLFGYQYGEK 345 Query: 336 -KWPQTSTSKGIIDPAVLSALY----NDLNTVSAIQALHKLARESTKNHDLLPIFNAS-- 388 W Q S I P + + +D N + L +LA+E + ++L + Sbjct: 346 LGWGQESA----IIPELATRFQELGDDDFNFSGGLAVLFELAKELRREGNILVHEGTTKT 401 Query: 389 ---------------AHILGIEVCKEHLNKNIS----IAIEKLVQERLILLKMKKFSSAD 429 A ILG+E + + + IE L+++R K K FS +D Sbjct: 402 PSDELQRQWNTLVTLAKILGLEAKLDDETQTQAGLSDTDIEALIEQRQAARKNKNFSESD 461 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRW 457 IR +L+++G L D +P TRW Sbjct: 462 RIRNELQAQGVTLID--SPQG----TRW 483 >gi|193083780|gb|ACF09463.1| cysteinyl-tRNA synthetase [uncultured marine crenarchaeote KM3-47-D6] Length = 462 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 185/471 (39%), Positives = 251/471 (53%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++TL TE + D I Y+CG TVYD AHIG+AR +IVFDVL R L Sbjct: 1 MQIFDTLRNMKTELEFSDKVGI--YLCGVTVYDDAHIGHARTIIVFDVLRRFLES--EGI 56 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII+RA QE S P+ + +K T+ + D L T P+ Sbjct: 57 TVEFVQNFTDVDDKIIDRANQEKIS-PLE-----LAAKYTKNYFDDFDGLNVKRATVYPK 110 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 A HI M LI +++ +AY N + F S YG S++KID+ G RV Sbjct: 111 AIEHIEDMQNLISSLVDKKYAYVTKNGVYFSVSKFTEYGKLSKKKIDDLISGARVSVDEE 170 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK S EP W+SPWG+GRPGWHIECSAMS YLG+ F+IHGGG DLIFPH Sbjct: 171 KNNPIDFALWKFSES-EPSWDSPWGKGRPGWHIECSAMSLKYLGENFEIHGGGRDLIFPH 229 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A IW+H G + + G KMSKS GN ++N +L+ +W Sbjct: 230 HENEIAQSESFIP-NQFAKIWMHVGMITINGEKMSKSLGNVKSVNHVLD-------NWGP 281 Query: 305 PVIRLAMLMTHYREPID----FTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 +IRL L Y +PID F + +T+ + S + + ++G+ D + Sbjct: 282 NIIRLFCLSGSYSKPIDYSEKFLKENITKLRQIESCYYELRLAEGVGDEIIAEKLVKECR 341 Query: 353 ----SALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASAHILGIEVC 397 SAL NDLNT A+ +KL RE T +L F + ILG ++ Sbjct: 342 EKFDSALNNDLNTPLALTTFYKLIREVNSLAAEEKITQTSAEIILQEFERMSEILGFQIL 401 Query: 398 K-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K KN I +++++R K + AD IR ++ K I D+KN Sbjct: 402 KVSDAEKN---EINQMIKKRDEYRMKKNYEQADNIRAEIAEKNVIFVDHKN 449 >gi|257418802|ref|ZP_05595796.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T11] gi|257160630|gb|EEU90590.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T11] Length = 470 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEACKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|327182876|gb|AEA31323.1| cysteinyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118] Length = 474 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 266/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + I MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKVYNTLTRKKEEFKPLVSGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 113 ATHEIKDIINFVKTLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------SKGI 346 + V+R M YR I+++ + L +A +L ++ T T S+ + Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRLEDDTASEAV 344 Query: 347 IDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 D A ++A+ +D N +A+ A+ +DLLP NA+A+ Sbjct: 345 PDLAKAIEETEQKFVTAMDDDFNVQNALTAI----------YDLLPAVNANANSEKADKE 394 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N IE+LV++R K ++++D +R Sbjct: 395 TLTLFEKKLAAWLLVFGVDTEKLCAQNAGSN-DDEIEELVKKRDEARANKDWATSDKLRD 453 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 454 QLKEMGITIQD--TP-QGTRWTR 473 >gi|255974563|ref|ZP_05425149.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T2] gi|257087877|ref|ZP_05582238.1| cysteinyl-tRNA synthetase [Enterococcus faecalis D6] gi|255967435|gb|EET98057.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T2] gi|256995907|gb|EEU83209.1| cysteinyl-tRNA synthetase [Enterococcus faecalis D6] Length = 470 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|145590332|ref|YP_001152334.1| cysteinyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514] gi|189082071|sp|A4WH15|SYC_PYRAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145282100|gb|ABP49682.1| cysteinyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514] Length = 476 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 179/480 (37%), Positives = 253/480 (52%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R++ EF P R YVCG T YD H+G+ R + FD+ R L E Sbjct: 1 MRIYNTATRQLEEFVTYTPRLARGYVCGITPYDSVHVGHGRVYVFFDMFRRYLEAQGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RAR+E + + + +F + + RL P+ Sbjct: 60 -VRLVINFTDIDDKIINRAREEFGAEAYKRWREV-PERYIAEFFEMSKRLFIKPAYAYPK 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T ++ M+ I+ ++ G+AY A + + F+ +PNYG SR++I+E G RV + Sbjct: 118 VTENVEDMVSWIKALVEKGYAYTAPDGSVYFEVGKVPNYGVLSRQRIEELMAGARVEPEP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK TP EP WESPW GRPGWH+EC MS+ +LG FD HGGG DLIFP Sbjct: 178 GKRNPLDFALWKSWTPGEPWWESPWCPGRPGWHLECVVMSTKHLGVPFDFHGGGADLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIA + ++ A WIH G+L + G KMSKS GN +T+ E L K+ G + Sbjct: 238 HHENEIAIAKAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNVVTLREAL--SKYSGEA-- 293 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEIL-------LSKWPQTSTSKGIIDPAVL---- 352 +RLA M+HYR+P++F+ + L +AE + + Q G D L Sbjct: 294 ---LRLAYAMSHYRKPMEFSYEVLDQAEEMAKTIYTAYDELGQAVGDAGEEDKEALDYGR 350 Query: 353 ------SALYNDLNTVSAIQALHKLARE--STKNH-----------DLLPIFNASAHILG 393 +AL +D +T A Q + LAR ST H +L + A ILG Sbjct: 351 YVEEFYAALEDDFSTPQAAQQFYGLARYIISTVLHKIDKISRNTALSILSQYVKMADILG 410 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + K + A++ V+ R L K +++ ADYIR++L G L D+ GQR Sbjct: 411 V-LERREVPKEVEEAVKAAVEVRAKLRKERQYQLADYIRERLAGIGVELHDF-----GQR 464 >gi|123966538|ref|YP_001011619.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515] gi|187629848|sp|A2BXK1|SYC_PROM5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123200904|gb|ABM72512.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515] Length = 492 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 184/515 (35%), Positives = 261/515 (50%), Gaps = 89/515 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL + + F+ ID +++Y CG TVYD H+G+AR I +DVL R L Y + Sbjct: 2 IKLFNTLSKNVEVFKPIDEE-VKIYCCGVTVYDLCHLGHARSYIAWDVLRRFL--IYSDY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKI++RA++E N ++ ++ KN +F KD L + P P+ Sbjct: 59 KVKFVQNFTDIDDKILKRAKEE------NSSMKQVSEKNIAEFHKDMDALGIMRPDSMPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 ATNHI + I+ + G AY ++ + +YG S + I EQ + + Sbjct: 113 ATNHICNICSFIKVLEKKGFAYARGGDVYYSVFKNKDYGKLSNQNILEQNINQQGRMTSD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG+ DIH GG DL Sbjct: 173 ESNKKNNPQDFALWKKAKENEPSFDSPWGKGRPGWHIECSAMVKDELGETIDIHLGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI +LL+ Sbjct: 233 IFPHHENEIAQSESANN-KKLANYWLHNGMVNVNGQKMSKSLKNFTTIRDLLD------- 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------- 350 S +P+ +R +L +YR+P+DFT + L A W + + D Sbjct: 285 SGTSPMTLRYFVLTVNYRKPLDFTDEALKSAS---EAWKTINVALSFFDITKKENLSIEV 341 Query: 351 -------------------------VLSALYNDLNTVSAIQALHKLAR---------EST 376 +AL NDLNT AI +++LA+ + Sbjct: 342 NETNEFVEEKYKEKINYEISQKKIKFTNALNNDLNTAGAIAIIYELAKPLKNFINQFQRI 401 Query: 377 KNHDL-----------LPIFNASAHILGIEVCKEHL---NKNISIAIEKLVQERLILLKM 422 KN D+ L +LG++ KE + NK I L+ +RLI K Sbjct: 402 KNLDINTNEKFHLRETLKTLEELTQVLGLK--KEEIIIENKITEEQIISLINKRLIAKKG 459 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + ++ AD IR L+ KG L D +T W Sbjct: 460 RDYAEADKIRNSLKEKGIEL-----IDQSTELTTW 489 >gi|315143639|gb|EFT87655.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2141] Length = 478 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|307296635|ref|ZP_07576455.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|306495971|gb|EFM65559.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|315029626|gb|EFT41558.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4000] Length = 478 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEELG---DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|325956062|ref|YP_004286672.1| cysteinyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|325332627|gb|ADZ06535.1| cysteinyl-tRNA synthetase [Lactobacillus acidophilus 30SC] Length = 474 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 266/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + I MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKVYNTLTRKKEEFKPLVSGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 113 ATHEIKDIINFVKTLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------SKGI 346 + V+R M YR I+++ + L +A +L ++ T T S+ + Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRLEDDTASEAV 344 Query: 347 IDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 D A ++A+ +D N +A+ A+ +DLLP NA+A+ Sbjct: 345 PDLAKAIEETEQKFVTAMDDDFNVQNALTAI----------YDLLPAVNANANSEKADKE 394 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N IE+LV++R K ++++D +R Sbjct: 395 TLTLFEKNLAAWLLVFGVDTEKLCAQNAGSN-DDEIEELVKKRDEARANKDWATSDKLRD 453 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 454 QLKEMGITIQD--TP-QGTRWTR 473 >gi|327533897|gb|AEA92731.1| cysteine--tRNA ligase [Enterococcus faecalis OG1RF] Length = 478 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KDMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILTFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|315037580|ref|YP_004031148.1| cysteinyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] gi|312275713|gb|ADQ58353.1| cysteinyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] Length = 477 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 266/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + I MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 4 LKVYNTLTRKKEEFKPLVSGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYK-GYK 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEIKDIINFVKTLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------SKGI 346 + V+R M YR I+++ + L +A +L ++ T T S+ + Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRLEDDTASEAV 347 Query: 347 IDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 D A ++A+ +D N +A+ A+ +DLLP NA+A+ Sbjct: 348 PDLAKAIEETEQKFVTAMDDDFNVQNALTAI----------YDLLPAVNANANSEKADKE 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N IE+LV++R K ++++D +R Sbjct: 398 TLTLFEKKLAAWLLVFGVDTEKLCAQNAGSN-DDEIEELVKKRDEARANKDWATSDKLRD 456 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 457 QLKEMGITIQD--TP-QGTRWTR 476 >gi|171184546|ref|YP_001793465.1| cysteinyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta] gi|229558796|sp|B1YA45|SYC_THENV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|170933758|gb|ACB39019.1| cysteinyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta] Length = 474 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 175/474 (36%), Positives = 252/474 (53%), Gaps = 44/474 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R++ EF P R YVCG T YD H+G+ R + FD+ R L E Sbjct: 1 MRIYNTATRQVEEFTTYVPRLARGYVCGITPYDHMHVGHGRVYVFFDIFRRYLERLGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKI+ +AR+E + + ++ + T RL P+ Sbjct: 60 -VRLVINFTDIDDKIVNKAREEFGHEAYKRWREV-PERYIAEYFEMTRRLYIKPAYAYPK 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T ++ M+ I ++ G+AY A + + F+ + +PNYG SR+KI+E G RV + Sbjct: 118 VTENVEDMVKWISTLVEKGYAYVAPDGSVYFEVAKVPNYGVLSRQKIEELIAGARVEPEP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK TP EP W SPW GRPGWH+EC MS+ +LG FD HGGG DLIFP Sbjct: 178 GKRNPLDFALWKSWTPGEPWWNSPWCPGRPGWHLECVVMSTKHLGAPFDFHGGGADLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIA + ++ A WIH G+L + G KMSKS GN IT+ E+L K G + Sbjct: 238 HHENEIAIARAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNIITLREVL--SKHSGEA-- 293 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTS---KGIIDP------- 349 +RLA M+HYR+P++FT + L +AE L + + + S + G D Sbjct: 294 ---LRLAYAMSHYRKPMEFTYELLQQAEDMAKTLYTAYDELSQALRDAGEKDQEPIAQEA 350 Query: 350 -----AVLSALYNDLNTVSAIQALHKLAR----------ESTKNHDLLPIFN---ASAHI 391 A AL +D++T A+Q L+ +AR E L + N A + Sbjct: 351 LKYAGAFYGALDDDMSTPEAVQQLYGMARYIISTVLHRVEKISRETALAVLNKYVEMADV 410 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 LG+ + + + K + A++ LV+ R L + +++ ADYIR++L G L D+ Sbjct: 411 LGV-LERRQIPKELEEAVKALVETRARLRQERQYQLADYIRQRLAELGVELHDF 463 >gi|148543540|ref|YP_001270910.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|184152946|ref|YP_001841287.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri JCM 1112] gi|227363504|ref|ZP_03847624.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri MM2-3] gi|189082068|sp|A5VI99|SYC_LACRD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558714|sp|B2G5S5|SYC_LACRJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148530574|gb|ABQ82573.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|183224290|dbj|BAG24807.1| cysteinyl-tRNA synthase [Lactobacillus reuteri JCM 1112] gi|227071441|gb|EEI09744.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri MM2-3] Length = 470 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 172/483 (35%), Positives = 259/483 (53%), Gaps = 67/483 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + G K Sbjct: 2 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFK-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAAEQGITVPQ------LAEKYINAFMEDTAAINIEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I ++I +Q +I G+AY + ++ + +YG S + +D+ ++G Sbjct: 114 ATENITEIIKFVQGLIEKGYAYPKDGDVYYRARKFNHYGQLSGQSLDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 174 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ +K W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 234 EFPHHENEIAQS-EAETGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 287 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQTAFDNLTYREQDADEGDVQE 345 Query: 350 AV----------LSALYNDLNTVSAIQALHKLAR----------------ESTKNH--DL 381 ++A+ +D+N + I +++L + ++ K +L Sbjct: 346 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSLGAIQAIKKELVEL 405 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + IF + +E +N I++L++ER I K K F+ +D IR L+ +G I Sbjct: 406 MSIFG-----VKLEASDNQINDE---KIKQLIEERNIARKNKDFARSDEIRDNLKKQGII 457 Query: 442 LED 444 LED Sbjct: 458 LED 460 >gi|315171290|gb|EFU15307.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1342] Length = 478 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAKRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|104774470|ref|YP_619450.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077205|sp|Q1G8Z0|SYC_LACDA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|103423551|emb|CAI98469.1| Cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 474 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 178/496 (35%), Positives = 268/496 (54%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYK-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEAGAEGTTVPE------LAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ IP +I IQ +I G+AYEA+ ++ + T +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRTKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS N +T++++L Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDEEKMSKSLHNCVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIF----N 386 P + +A+ +D N +A+ A+++ A + + L +F Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 P + TRW ++ Sbjct: 465 --TP----QGTRWSRE 474 >gi|77745319|gb|ABB02560.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri] Length = 470 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 173/485 (35%), Positives = 261/485 (53%), Gaps = 71/485 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + G K Sbjct: 2 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFK-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAAEQGITVPQ------LAEKYINAFMEDTAAINIEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I ++I +Q ++ G+AY + ++ + + +YG S + +D+ ++G Sbjct: 114 ATENITEIIKFVQGLVEKGYAYPKDGDVYYRSRKFNHYGQLSGQSLDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 174 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ +K W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 234 EFPHHENEIAQS-EAETGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 287 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQIAFDNLTYREQDADEGDVQE 345 Query: 350 AV----------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH-----ILGI 394 ++A+ +D+N + I +++L + + N AH + I Sbjct: 346 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYA----------NVYAHQDNVSLGAI 395 Query: 395 EVCKEHLNKNISI---------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + K+ L + +SI I++L++ER I K K F+ +D IR L+ +G Sbjct: 396 QAIKKELVELMSIFGVKLEASDNQINDEKIKQLIEERNIARKNKDFARSDEIRHNLKKQG 455 Query: 440 FILED 444 ILED Sbjct: 456 IILED 460 >gi|312903154|ref|ZP_07762335.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|310633545|gb|EFQ16828.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|315163378|gb|EFU07395.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0645] gi|315578631|gb|EFU90822.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0630] Length = 478 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIGVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|159484322|ref|XP_001700207.1| cysteinyl-tRNA synthetase [Chlamydomonas reinhardtii] gi|158272523|gb|EDO98322.1| cysteinyl-tRNA synthetase [Chlamydomonas reinhardtii] Length = 637 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 211/365 (57%), Gaps = 47/365 (12%) Query: 1 MKKKIKIYNTLERKITEFQA-IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 +++++ +NT+ + F+ + ++ MYVCG TVYD++HIG+AR + FDVLYR L Sbjct: 32 LRERVTFFNTMSKSKELFRPRLSDGSVSMYVCGVTVYDYSHIGHARVYVAFDVLYRFLSA 91 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 G K VTYVRN TDIDDKII RA+Q + ++ +T + +F KD L L P Sbjct: 92 ACGYK-VTYVRNFTDIDDKIIARAQQARSGVETSE----LTERFIDEFNKDMAALNVLPP 146 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 +PRAT +PQMI I +II +GHAY + ++ FD +S+P YG S R+ ++ + G R Sbjct: 147 ALEPRATAFVPQMISTITDIIANGHAYAVDGGDVFFDVASLPGYGRLSGRQQEDNRAGER 206 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++PADF LWK + P EP W SPWG GRPGWHIECS+M +G V DIHGGG Sbjct: 207 VAVDSRKRSPADFALWKAAKPGEPAWPSPWGPGRPGWHIECSSMIRELMGPVIDIHGGGR 266 Query: 239 DLIFPHHENEIAQSCCA------------------------------DRIEKTANI---W 265 DL+FPHHENE+AQS A ++ + W Sbjct: 267 DLVFPHHENELAQSQAACGCGQHGHEHGHEHGGQQGGASTSGGDGSQSQLHNGTDFVRYW 326 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +HNGF+N++ KMSKS GNF TI ++L R P +R ++ + YR P++++ + Sbjct: 327 LHNGFVNVDSEKMSKSLGNFFTIRDVL------ARYHPL-ALRWFLVSSQYRAPLNYSDK 379 Query: 326 RLTEA 330 L +A Sbjct: 380 GLEDA 384 >gi|256960771|ref|ZP_05564942.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Merz96] gi|256951267|gb|EEU67899.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Merz96] Length = 470 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILTFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|325526735|gb|EGD04251.1| cysteinyl-tRNA synthetase [Burkholderia sp. TJI49] Length = 465 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/472 (37%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIDAMHADEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A++ ++ + NYG S + +D+ + G RV Sbjct: 114 PRATLFIPQMLGMIEKLEANGYAYQASDGDVNYSVRKFRNYGKLSGKSLDDLRAGERVAS 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDTLALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQASGAAQAGALAADEIEARIAARVAAKQAKDYAEADRIRAELLEAGVALED 454 >gi|282850303|ref|ZP_06259682.1| cysteine--tRNA ligase [Veillonella parvula ATCC 17745] gi|294793811|ref|ZP_06758948.1| cysteine--tRNA ligase [Veillonella sp. 3_1_44] gi|282579796|gb|EFB85200.1| cysteine--tRNA ligase [Veillonella parvula ATCC 17745] gi|294455381|gb|EFG23753.1| cysteine--tRNA ligase [Veillonella sp. 3_1_44] Length = 482 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/500 (35%), Positives = 247/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E S I ++ + + L Sbjct: 61 YK-VTYVQNFTDVDDKIINTSNGEGVSW------DTIANRYIDSYFEVMDALGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +IQ +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIDDIIAMIQTLIDKGYAYELDGDVYYSVEKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPAVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGSCDEAQRLL 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLP----------------IF 385 A+ +D NT A ++ LA+E + + IF Sbjct: 347 EKAKAYEEEFEDAMSDDFNTALATSSMFGLAKEINIYYQAVTSREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILGI-EVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G+ E E + E+L+Q R + K+++ AD IR +L G Sbjct: 407 KFMTDVIGVLEKAWEGNTGANAAEYEELMQVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 467 TIED--SPQGA----RWKKR 480 >gi|319794160|ref|YP_004155800.1| cysteinyL-tRNA synthetase [Variovorax paradoxus EPS] gi|315596623|gb|ADU37689.1| cysteinyl-tRNA synthetase [Variovorax paradoxus EPS] Length = 458 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 182/465 (39%), Positives = 249/465 (53%), Gaps = 45/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R++ EF + P +RMYVCG TVYD+ H+G+AR MI FDV+ R L+ + Sbjct: 3 LRIYNTLSRELEEFSPLQPGKVRMYVCGMTVYDYCHLGHARSMIAFDVVQRWLKASGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + ++I +T + +D L PTH+PR Sbjct: 62 -VTYVRNITDIDDKIIRRA------VENGESIRALTDRMIDALHEDADALGIARPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++IPQM+ +I + G AY A N ++ + P YG S + IDE G RV Sbjct: 115 ATDYIPQMLSMIGTLEKKGLAYRAENGDVNYAIRKFPGYGKLSGKSIDELHAGERVAVLD 174 Query: 184 HKKNPADFILWKR---STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P D +LWK S P E W S +G GRPGWHIECSAM+ LG+ DIHGGG DL Sbjct: 175 GKDDPLDPVLWKSAKASEPEEVKWASEFGAGRPGWHIECSAMACALLGETLDIHGGGEDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A+ + +N W+HNGF+ + KMSKS GNF I ++L + Sbjct: 235 QFPHHENEIAQSEGAND-KPLSNYWMHNGFIVTDNEKMSKSLGNFFLIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A IR +L HYR P++++ L +A L + T+ ++ PA + Sbjct: 287 KYDAETIRFFVLRAHYRRPLNYSDVHLDDARNSLKR---LYTALDLVAPAEVTIDWTDPY 343 Query: 353 -----SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVCKEHLN 402 +A+ D T A+ L LA E S LL IL + K L Sbjct: 344 AARFKAAMDEDFATPEAVAVLFDLAGEVNRTRSATQAGLLKALGGCVQILQSD-PKSFLR 402 Query: 403 KNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ AI+ + R K F+ AD IR+ L +G +L+D Sbjct: 403 AGATLDDAAIQAQIDARAAAKAAKNFAEADRIRQGLLEQGIVLKD 447 >gi|297801734|ref|XP_002868751.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi|297314587|gb|EFH45010.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] Length = 511 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 182/505 (36%), Positives = 256/505 (50%), Gaps = 77/505 (15%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K ++K+YNT+ ++ I P I +YVCG T YDF+HIG+AR + FDVLYR L++ Sbjct: 5 KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHLG 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V +VRN TD+DDKII RA E+ P++ ++++ ++++ D L CL PTH Sbjct: 65 YE--VNFVRNFTDVDDKIIIRA-NENGEDPLD-----LSNRFCEEYLVDMGALQCLLPTH 116 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPR + H+ +I +I+ II Y ++ F PNYG S + ++ + G RV Sbjct: 117 QPRVSEHMDHIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAV 176 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF LWK + P EP WESPWG GRPGWHIECSAMS+HYL FDIHGGG DL Sbjct: 177 DSRKRNPADFALWKAAKPEEPSWESPWGPGRPGWHIECSAMSAHYLSPKFDIHGGGADLK 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+C A + N W+HNG + + KM+KS NF TI E+ S Sbjct: 237 FPHHENEIAQTCAACE-DSGVNYWLHNGHVTINNEKMAKSKKNFKTIREITA-------S 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------------------------SK 336 + +R ++ YR P+ F+ +L + L K Sbjct: 289 YHPLALRHFLMSAQYRSPLSFSASQLESSSDALYYVYQTLQDLDEDLSPYREALSEDGGK 348 Query: 337 WPQTSTSKGII---DPAVLSALYNDLNTVSAIQALH------------KLARESTKNH-- 379 QT K II S + +DLNT + + KL + K Sbjct: 349 AEQTPEGKDIIKKLKSEFESKMLDDLNTAHILTGAYQDALKFINANRSKLKKMQKKQRMS 408 Query: 380 ---DLLPIFNASAHILGI----------EVCKEHLNKNISIA------IEKLVQERLILL 420 L+ I A+ +L + EV KE K + A I + +++R+ Sbjct: 409 MLVSLVEIEKAAREVLDVLGLLTTLSYAEVLKEMKLKTLIRAEMGEEDILREIEDRITAR 468 Query: 421 KMKKFSSADYIRKQLESKGFILEDY 445 K F+ +D IR++L KG L D+ Sbjct: 469 NNKDFAKSDEIREKLTRKGIALMDF 493 >gi|227545183|ref|ZP_03975232.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri CF48-3A] gi|300909140|ref|ZP_07126601.1| cysteine--tRNA ligase [Lactobacillus reuteri SD2112] gi|227184829|gb|EEI64900.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri CF48-3A] gi|300893005|gb|EFK86364.1| cysteine--tRNA ligase [Lactobacillus reuteri SD2112] Length = 478 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 260/483 (53%), Gaps = 67/483 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + G K Sbjct: 10 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFK-GYK 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K F++DT + T PR Sbjct: 69 -VNYVSNFTDVDDKMIKAAAEQGITVPQ------LAEKYINAFMEDTAAINIEPATLHPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I ++I +Q ++ G+AY + ++ + + +YG S + +D+ ++G Sbjct: 122 ATENITEIIKFVQGLVEKGYAYPKDGDVYYRSRKFNHYGQLSGQSLDDLEVGASEHVSAD 181 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 182 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 241 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ +K W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 242 EFPHHENEIAQS-EAETGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 295 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQIAFDNLTYREQDADEGDVQE 353 Query: 350 AV----------LSALYNDLNTVSAIQALHKLAR----------------ESTKNH--DL 381 ++A+ +D+N + I +++L + ++ K +L Sbjct: 354 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSLGAIQAIKKELVEL 413 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + IF + +E +N I++L++ER I K K F+ +D IR L+ +G I Sbjct: 414 MSIFG-----VKLEASDNQINDE---KIKQLIEERNIARKNKDFARSDEIRDNLKKQGII 465 Query: 442 LED 444 LED Sbjct: 466 LED 468 >gi|227533678|ref|ZP_03963727.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188662|gb|EEI68729.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 461 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 182/486 (37%), Positives = 258/486 (53%), Gaps = 61/486 (12%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + RK F + P IRMYVCGPTVY++ HIGNAR I FD + R Y G K VTYV Sbjct: 1 MSRKKETFTPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR-GYK-VTYVS 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII A + + P++ A I + F++DTT L T PRA+ IP Sbjct: 59 NFTDVDDKIINAAHKTGEA-PLDLAQRFIDA-----FMEDTTALGIEPATAHPRASQMIP 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----PEKYHKK 186 +I +Q++I +AY + ++ + +YG S + +DE + G E K+ Sbjct: 113 DIIDFVQDLIDKEYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQDELAKKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF LWK + P E WESPWG+GRPGWHIECS MS+ LG FDIHGGG DL FPHHE Sbjct: 173 DPIDFALWKAAKPGEISWESPWGKGRPGWHIECSVMSTKLLGDTFDIHGGGQDLEFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGGRSWPA 304 NEIAQS A ++ W+HNGF+ + + KMSKS GNFIT++++ +T Sbjct: 233 NEIAQS-EAKTDKQFVRYWMHNGFVTIGEDDEKMSKSLGNFITVHDIRKTVD-------P 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQTSTSKG 345 V+R M T YR PI ++ L A L++ PQ + Sbjct: 285 QVLRFFMAGTQYRMPIRYSETNLKNAANSLNRLKIARENLTYRRRGAETGVDPQITKQLQ 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKN---HDLLPIFNASAHILGI 394 + ++A+ +D+N + + L LA+ E+ K+ +DLL ++A I G+ Sbjct: 345 TLKDRFVTAMDDDINVQNGLTVLFDLAKLLNEYANEETVKSESINDLLNEYDAWLQIFGV 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + KN+ I+ LV+ R K F+ +D IR QL ++G ILED P + Sbjct: 405 VFADQ---KNLDADIDALVKARDAARAAKDFAKSDQIRDQLAAQGIILED--TP----QG 455 Query: 455 TRWKQK 460 TRW+++ Sbjct: 456 TRWRRQ 461 >gi|325681889|ref|ZP_08161407.1| cysteine--tRNA ligase [Lactobacillus reuteri MM4-1A] gi|324978533|gb|EGC15482.1| cysteine--tRNA ligase [Lactobacillus reuteri MM4-1A] Length = 478 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 172/483 (35%), Positives = 259/483 (53%), Gaps = 67/483 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + G K Sbjct: 10 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFK-GYK 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K F++DT + T PR Sbjct: 69 -VNYVSNFTDVDDKMIKAAAEQGITVPQ------LAEKYINAFMEDTAAINIEPATLHPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I ++I +Q +I G+AY + ++ + +YG S + +D+ ++G Sbjct: 122 ATENITEIIKFVQGLIEKGYAYPKDGDVYYRARKFNHYGQLSGQSLDDLEVGASEHVSAD 181 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 182 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 241 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ +K W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 242 EFPHHENEIAQS-EAETGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 295 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQTAFDNLTYREQDADEGDVQE 353 Query: 350 AV----------LSALYNDLNTVSAIQALHKLAR----------------ESTKNH--DL 381 ++A+ +D+N + I +++L + ++ K +L Sbjct: 354 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSLGAIQAIKKELVEL 413 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + IF + +E +N I++L++ER I K K F+ +D IR L+ +G I Sbjct: 414 MSIFG-----VKLEASDNQINDE---KIKQLIEERNIARKNKDFARSDEIRDNLKKQGII 465 Query: 442 LED 444 LED Sbjct: 466 LED 468 >gi|257081388|ref|ZP_05575749.1| cysteinyl-tRNA synthetase [Enterococcus faecalis E1Sol] gi|256989418|gb|EEU76720.1| cysteinyl-tRNA synthetase [Enterococcus faecalis E1Sol] Length = 470 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---LDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|78066853|ref|YP_369622.1| cysteinyl-tRNA synthetase [Burkholderia sp. 383] gi|109894879|sp|Q39EY8|SYC2_BURS3 RecName: Full=Cysteinyl-tRNA synthetase 2; AltName: Full=Cysteine--tRNA ligase 2; Short=CysRS 2 gi|77967598|gb|ABB08978.1| cysteinyl-tRNA synthetase [Burkholderia sp. 383] Length = 465 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 176/470 (37%), Positives = 248/470 (52%), Gaps = 45/470 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + D + L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHDDESALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATEFIPQMLGMIETLETNGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGTSWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ D L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRL-YTALKDVEADTLALDWNEPH 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHILGI 394 +A+ +D NT A+ L +LA E + D + L Sbjct: 345 AQRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQ 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 405 ASGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLETGIALED 454 >gi|227518065|ref|ZP_03948114.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|256964025|ref|ZP_05568196.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|257084048|ref|ZP_05578409.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Fly1] gi|227074501|gb|EEI12464.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|256954521|gb|EEU71153.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|256992078|gb|EEU79380.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Fly1] Length = 470 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 258/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|257417468|ref|ZP_05594462.1| cysteinyl-tRNA synthetase [Enterococcus faecalis AR01/DG] gi|300862011|ref|ZP_07108091.1| cysteine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|257159296|gb|EEU89256.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ARO1/DG] gi|295112378|emb|CBL31015.1| cysteinyl-tRNA synthetase [Enterococcus sp. 7L76] gi|300848536|gb|EFK76293.1| cysteine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] Length = 470 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 258/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|91070003|gb|ABE10929.1| cysteinyl-tRNA synthetase [uncultured Prochlorococcus marinus clone ASNC3046] Length = 489 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 195/509 (38%), Positives = 264/509 (51%), Gaps = 80/509 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL +K+ F+ ID +++Y CG TVYD H+G+AR I +D+L R L Y + Sbjct: 2 IKLFNTLSKKVEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIAWDILRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E S+ ++ KN +F KD L + P PR Sbjct: 59 KVKYVQNFTDIDDKILKRAKEESSSMKE------VSEKNIIEFHKDMDSLGIMRPDSMPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ---KMGTRVPE 181 ATNHI + I + G+AY + ++ + NYG S + + EQ + G V E Sbjct: 113 ATNHICNICSFITVLEDKGYAYSRDGDVYYSVFKNKNYGKLSNQNLQEQNINQQGRMVNE 172 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENSKKLNPQDFALWKKAKDDEPFFDSPWGKGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ + Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFKTIRELI-------K 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDP--- 349 S +P+ +R ++ +YR+P+DFT + L A I LS T + ID Sbjct: 285 SGISPMTLRYFVMTVNYRKPLDFTEEALRSASEAWKNINIALSFMDLTKDAFKSIDKNES 344 Query: 350 ------------------AVLSALYNDLNTVSAIQALHKLAR------------ESTK-- 377 AL NDLNT AI ++ LA+ E K Sbjct: 345 IEVEYKEKISFELSQKKLKFSEALGNDLNTAGAIAIIYDLAKPLKNFLNQFQRVECFKID 404 Query: 378 -NHDLLPIFNAS-----AHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSA 428 N I N +LG++ KE L K I I L+ ERL K K ++ A Sbjct: 405 LNEKFFLIENFKTLEKLTEVLGLK--KEVLVKESKIKDDEISSLIDERLKAKKEKNYAKA 462 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRW 457 D IR L+ KG L D + +T W Sbjct: 463 DEIRNFLKEKGIEL-----IDQSKEITTW 486 >gi|256761895|ref|ZP_05502475.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T3] gi|256683146|gb|EEU22841.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T3] Length = 470 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 259/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAVANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|158340032|ref|YP_001521202.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] gi|158310273|gb|ABW31888.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] Length = 496 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 185/509 (36%), Positives = 256/509 (50%), Gaps = 73/509 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL + F ++ P + MY CG TVYD H+G+AR + +DVL R L++ Sbjct: 3 LTLHNTLTNQKEPFISVHPERVVMYCCGVTVYDNCHLGHARSYMAWDVLRRYLKWC--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N TDIDDKI+ RA I + I++ ++ + + +D RL L Sbjct: 61 TVRYVQNFTDIDDKILHRA--------IVEGITMQEVSDRYINAYFRDIRRLNILDADDY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 PR T HIP + LIQ + G+AY + ++ + YG S RK+++ K+G RV Sbjct: 113 PRVTEHIPAIHQLIQALEQQGYAYAIDGDVYYSVRQFSEYGKLSGRKLEQLKVGAGGRVA 172 Query: 181 EKYH---KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK + P EP WESPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 173 DDTQDQKKRDPFDFALWKSAKPGEPAWESPWGLGRPGWHIECSAMIRARLGETIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENEIAQS + A W+HNG + + G KMSKS GNF TI +LL+ Sbjct: 233 GDLVFPHHENEIAQSEVLTG-QPLARYWLHNGMVTVNGEKMSKSLGNFTTIRDLLDG--- 288 Query: 298 GGRSWPAPV----IRLAMLMTHYREPIDFTVQRLT---------EAEIL----------- 333 G +P PV +RL +L HYR+P+DFT + +A IL Sbjct: 289 GWADYPEPVDPMAVRLFVLQGHYRKPLDFTKDAIVASINSWQTLKAGILFGNRHRVALSS 348 Query: 334 ----LSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS- 388 + PQ +S+ SA+ +DLNT A+ L +LA+ + + L S Sbjct: 349 PFASIQSSPQEPSSEDPWTKRFQSAMDDDLNTSGALAVLFELAKALQREGNRLVHEGKSQ 408 Query: 389 ----------------AHILGIEV-----CKEHLNKNISIAIEKLVQERLILLKMKKFSS 427 A +LG+E E K I L+Q+R K + F + Sbjct: 409 SSPELLWQQWQTLLYLAQVLGLEAKVNSDTDEATGKLDEAVITDLIQQRQTARKQRDFIT 468 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTR 456 AD IR QL + G + D PD R R Sbjct: 469 ADDIRAQLSAAGITVVD--QPDGATRWHR 495 >gi|312901251|ref|ZP_07760534.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|311291628|gb|EFQ70184.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0470] Length = 478 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KDMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +D L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDAQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|260221171|emb|CBA29469.1| Cysteinyl-tRNA synthetase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 483 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 181/463 (39%), Positives = 250/463 (53%), Gaps = 41/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R + F I+P ++RMYVCG T+YD HIG+AR M+ FDV+ R L+ + Sbjct: 28 LRIFNTLTRSLQPFTPIEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGMQ- 86 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T + D L P+ +PR Sbjct: 87 -VTYVRNITDIDDKIIRRAVERGITI------RQLTDEMIAAMHADIGALHIEPPSVEPR 139 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ LI + G AY A+N ++ + YG S + +DE + G RV Sbjct: 140 ATEYVPQMLSLIGELEAKGLAYRASNGDVNYSVRKFEGYGKLSGKSLDELRAGERVAVLD 199 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP WES +G GRPGWHIECSAMS LG FDIHGGG DL Sbjct: 200 GKEDPLDFVLWKSAKPEEPPEAKWESVFGTGRPGWHIECSAMSCATLGTTFDIHGGGADL 259 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN W+HNGF+ ++ KMSKS GNF TI ++L R Sbjct: 260 QFPHHENEIAQSEGAHG-QALANFWMHNGFVRVDNEKMSKSLGNFFTIRDVL-------R 311 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDPAVL- 352 + A +R ++ HYR ++++ L +A LS+ T S +P Sbjct: 312 QYDAETVRFFIVRAHYRSALNYSDAHLDDARQALKRLYTALSQVQATDISIDWSNPFAAR 371 Query: 353 --SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAHILGIEVCKEHLNKNI 405 +A+ D T A+ L LA E S + LL A +L + +L Sbjct: 372 FKAAMDEDFGTPEAVAVLFDLAGEVNRSKSVEAASLLKALGACLGLLQAD-ANAYLQSGA 430 Query: 406 SIAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILED 444 + E +Q+R+ K F+ AD IRK L ++G +L+D Sbjct: 431 GLD-EATIQQRIADRAAAKAAKDFALADAIRKDLLAQGIVLKD 472 >gi|282860520|ref|ZP_06269586.1| cysteinyl-tRNA synthetase [Streptomyces sp. ACTE] gi|282564256|gb|EFB69792.1| cysteinyl-tRNA synthetase [Streptomyces sp. ACTE] Length = 465 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 250/469 (53%), Gaps = 47/469 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLYDTNARQIRDFVPLTAGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFAYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKII+++ ++ N I +N + F L CL PT++PR Sbjct: 62 -VTFIRNVTDIDDKIIKKSAEQ------NRPWWSIGYENERAFNDGYDALGCLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +M+ +++ +I GHAYEA+ + FD S Y S + +D+ + + E Sbjct: 115 ATGHITEMVEMMRGLIERGHAYEADGNVYFDVRSYEGYLELSNQDLDDLRQPSGEGET-G 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DLIFPH Sbjct: 174 KRDPRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGIDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ ++ A W+HNG++ + G KMSKS GN + ++E++ + W Sbjct: 234 HENEIAQAKAFG--DEFAKYWVHNGWVTMSGEKMSKSLGNSVLVSEMV-------KRWRP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPAV------LS 353 V+R + HYR I+++ + L EAE ++ T + G + PA Sbjct: 285 IVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVTEMAGGEVAPAAEVPPAFAE 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGI---------E 395 A+ +DL A+ +H R+ L A +LG+ E Sbjct: 345 AMDDDLGVPQALAVVHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDAHWVSE 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++ +R K + +AD IR +L G ++ED Sbjct: 405 TEGEDLHGVVDTLVRLVLDQRQAARDRKDWPAADAIRDRLSQAGLVIED 453 >gi|184154737|ref|YP_001843077.1| cysteinyl-tRNA synthetase [Lactobacillus fermentum IFO 3956] gi|227514004|ref|ZP_03944053.1| cysteine--tRNA ligase [Lactobacillus fermentum ATCC 14931] gi|260663234|ref|ZP_05864126.1| cysteinyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] gi|229558713|sp|B2GAB5|SYC_LACF3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|183226081|dbj|BAG26597.1| cysteinyl-tRNA synthase [Lactobacillus fermentum IFO 3956] gi|227087648|gb|EEI22960.1| cysteine--tRNA ligase [Lactobacillus fermentum ATCC 14931] gi|260552426|gb|EEX25477.1| cysteinyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] Length = 472 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 168/483 (34%), Positives = 252/483 (52%), Gaps = 67/483 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + MYVCGPTVY++ HIGNAR ++ FD + R L + Sbjct: 2 LKIYNTLTRQKEEFHPQQAGIVNMYVCGPTVYNYIHIGNARSVVAFDTVRRYLEF--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A+++ ++P + K Q +++DT L T PR Sbjct: 60 QVNYVSNFTDVDDKMIKAAKEQGITVPE------LAYKYIQAYMEDTAALNVEPATTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I +I I+++I G+AY++ ++ + +YG S + +D+ ++G Sbjct: 114 ATENIDGIISFIEDLIEKGYAYQSGGDVYYRARKFAHYGQLSGQSLDDLEVGASEHVSTE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E KK+P DF LWK + P E W+SPWG GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 EVAKKKDPLDFALWKAAKPGEIKWDSPWGAGRPGWHIECSVMSTKYLGDTLDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A + N W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 EFPHHENEIAQS-EAKTGHRFVNYWMHNGFVTIGRDNEKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------------KWPQTSTSKG 345 + V+R M T YR PI ++ + L EA+ L K + T G Sbjct: 287 -KEVDPQVLRFFMSTTQYRRPIQYSQESLVEAQANLEHLKNTYDNLAYRLKDATSGTDGG 345 Query: 346 I------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD------------------L 381 + ++A+ +D+N + I +++L R + + + L Sbjct: 346 VQRQLADFRARFVAAMDDDINVQNGIAVVYELMRFANQYVEQRLVQREPIVAIQLMLKRL 405 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + +F + E+ E I++L+++R K F+ +D IR QL +G I Sbjct: 406 VAVFGVDLAVSATEINDEK--------IKELIEKRNAARAEKDFALSDQIRDQLRDQGII 457 Query: 442 LED 444 LED Sbjct: 458 LED 460 >gi|170017958|ref|YP_001728877.1| cysteinyl-tRNA synthetase [Leuconostoc citreum KM20] gi|226735061|sp|B1MW68|SYC_LEUCK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169804815|gb|ACA83433.1| cysteinyl-tRNA synthetase [Leuconostoc citreum KM20] Length = 469 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 182/486 (37%), Positives = 260/486 (53%), Gaps = 59/486 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F AI P + MYVCGPTVY++ HIGNAR I FDV+ R L Y Sbjct: 2 IHVYNTLSREKEAFHAITPGKVNMYVCGPTVYNYIHIGNARSAIAFDVIRRYLEY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RAR+E D ++I K Q F +DT L T + R Sbjct: 60 VVNYVSNFTDVDDKIIQRAREEGV-----DEMTI-ADKYAQAFDEDTIPLNIKPATTRSR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT IP +I ++++I G+AYE+ ++ F YG + + + E + R+ ++ Sbjct: 114 ATAVIPDIIAFVEDLIHKGYAYESAGDVYFRAKKFKGYGILAHQDLAEMEANAAGRLDDQ 173 Query: 183 --YHKKNPADFILWKRS-TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF +WK S + E W SPWG+GRPGWHIECS M+ YL DIHGGG+D Sbjct: 174 ELTRKEDPIDFAVWKASHSSDEISWVSPWGKGRPGWHIECSVMAQKYLADTIDIHGGGID 233 Query: 240 LIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 L FPHH NEIAQS R +T N W+HNGF+N+ KMSKS GNF T++++L Sbjct: 234 LAFPHHTNEIAQSEA--RTGQTFVNYWLHNGFVNVNDEKMSKSLGNFTTVHDMLA----- 286 Query: 299 GRSWPAP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKGIIDP 349 + P VIR + T YR PI++ L +A L + + + ST+K D Sbjct: 287 --HYDDPMVIRYLLATTQYRRPINYAPDTLEQARAELERIRTAYRNVFFRISTAKTGHDD 344 Query: 350 AV-----------LSALYNDLNTVSAIQALHKL--------ARESTKNHDLLPIFNASA- 389 +V A+ +D NT +AI ++ +L +R+ K + +A A Sbjct: 345 SVDYAIAEHISHFREAMDDDFNTQNAIASIFELVTIANNYASRDEIKLDTATRLTHAIAD 404 Query: 390 --HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ G+ EHL +S + L+ +R+ ++ F+ +D +R QL G I+ED Sbjct: 405 LMNVFGVNGLSEHL--TLSAEAQALLDKRVQARAVRDFNLSDQLRDQLSDMGIIVED--- 459 Query: 448 PDNGQR 453 GQR Sbjct: 460 TTQGQR 465 >gi|256855023|ref|ZP_05560384.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T8] gi|256709536|gb|EEU24583.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T8] Length = 470 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 258/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEELG---DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|159905981|ref|YP_001549643.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C6] gi|229558715|sp|A9AAN8|SYC_METM6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|159887474|gb|ABX02411.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C6] Length = 476 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 176/485 (36%), Positives = 248/485 (51%), Gaps = 56/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ ++ ++MYVCGPTVYD H+G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRKEEEFKPLNEKEVKMYVCGPTVYDHTHLGHGRTYVSFDIIRRYLEHI--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA E+ P + IT F+ D T L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRA-NENGKNPKELSEQFITV-----FLNDMTTLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I I+ +I G AYE N + F+ NYG S +++ G R+ Sbjct: 114 VTEHIPEIIAFIEKLIEKGFAYETENGVYFEVKKFENYGKLSNINLEDLFSGVRIETSEE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + P EP W+SP+ GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNPEDFALWKTAKPGEPKWKSPFVEGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNF+TI + + + Sbjct: 234 HENEIAQSVAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFVTIEGI-------SKEYDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDPAVL- 352 ++R + HYR PID+T + +T + L K ++ S+ + VL Sbjct: 286 EILRFFFIQRHYRSPIDYTAESITHVKNNLEKIYNVIENIRISLEKSEKSRVWGENEVLL 345 Query: 353 ------------SALYNDLNTVSAIQALHKLARESTKNHDLLP------------IFNAS 388 A+ +D NTV A++++ +++ K L+ F Sbjct: 346 YDILKNSKRNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVKTPSEGLLLKAFDFFKIV 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ K + I+ L++ R L K + +D IR L++ G+ +ED Sbjct: 406 GEIFGLFENYFKTSSESDDEEFIKFLIELRSDLRLQKNYEMSDKIRDGLKNLGYQIED-- 463 Query: 447 NPDNG 451 NP G Sbjct: 464 NPKEG 468 >gi|325479181|gb|EGC82278.1| cysteine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 472 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 180/480 (37%), Positives = 263/480 (54%), Gaps = 58/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I+ + I+MYVCGPTVYD+ HIGNARP++VFD R + + + Sbjct: 1 MKIHNTLTRQKEEFIPINENEIKMYVCGPTVYDYMHIGNARPLVVFDTFRRYMTFKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV N TD+DDKII + SI +T K + +++D L T P Sbjct: 60 -VKYVVNFTDVDDKIINK------SIAEGITTKEVTDKYIKAYMEDAKDLNIDEENTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----V 179 RAT + +I I+ ++ AYE+ ++ FD S +YG S + I++ G Sbjct: 113 RATEVMDDIIAFIKGLVDKNMAYESEGDVYFDVSKADDYGKLSGKNIEDLVHGASNRLDT 172 Query: 180 PEKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+P DF LWK++ E W SPWG GRPGWHIECS MS LG+ DIH GG Sbjct: 173 ADGSKKKSPVDFALWKKTKKEGEISWSSPWGEGRPGWHIECSTMSKKILGETIDIHAGGE 232 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS + EKT AN W+HNG + ++G KMSKS GNF T++++ Sbjct: 233 DLEFPHHENEIAQSEGLN--EKTFANYWMHNGMIQVDGTKMSKSLGNFFTLHDI------ 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----EILLSKWPQTSTS 343 + + VIR +L T+YR+PI+FT + RLT A E L++K + + S Sbjct: 285 -KKEYDLGVIRFWLLTTNYRQPINFTREIIEQAKASLNRLTNAYFRLEDLITKAEEKAIS 343 Query: 344 ---KGIID------PAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNA 387 K +++ + + +DLNT AI L +A+ E+T L F+ Sbjct: 344 EEEKNLLENLDKFKENFIEVMDDDLNTADAITVLFDMAKFINTKLSETTSKEVLEKTFDL 403 Query: 388 SAHI---LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + LG+ K+ ++ ++ IE+L+++R + K K F++AD IR L + G ++D Sbjct: 404 YKDLFASLGLVAKKKEVDVDVE-RIEELIEKRSLAKKNKDFATADAIRDVLTAMGITIKD 462 >gi|303232418|ref|ZP_07319110.1| cysteine--tRNA ligase [Atopobium vaginae PB189-T1-4] gi|302481502|gb|EFL44570.1| cysteine--tRNA ligase [Atopobium vaginae PB189-T1-4] Length = 508 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 183/515 (35%), Positives = 252/515 (48%), Gaps = 98/515 (19%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYN+ K EF + +RMYVCGPTVYD HIGNAR + FD + R L+Y E V Sbjct: 4 IYNSQTHKKEEFIPAEKGRVRMYVCGPTVYDQIHIGNARTFLSFDTIRRYLQYKGFE--V 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 + +N+TD+DDKII RA + S I ++ F++ R L P +PRAT Sbjct: 62 VFAQNLTDVDDKIINRANENGVEA------SEIARTYSRAFIEQMHRFNILDPDIRPRAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 I M +IQ +I + AY A+N ++ F S +YG+ S R +D+ + G RV K Sbjct: 116 QEIHAMQTMIQTLIANKCAYVADNGDVYFSVRSDASYGTVSGRNLDDLRAGERVEVNDAK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF LWK + P EP W+SPWG GRPGWH EC AM HYL DIHGGG DL+FPHH Sbjct: 176 RDPFDFALWKAAKPGEPAWDSPWGAGRPGWHTECCAMIHHYLDAPIDIHGGGQDLMFPHH 235 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENE AQS CA + A+ W+H G L ++G KMSKS GNF T+ ++L+T + A Sbjct: 236 ENENAQSVCA-WSQPLAHYWMHTGMLRVDGEKMSKSLGNFYTLKDVLDT-------YSAD 287 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKG----------- 345 +RL ML THYR P+DF+ +RL A+ L+ +W S+ Sbjct: 288 EVRLLMLQTHYRAPLDFSFERLKGAQGTLARIKSCVKNLRWAAEHDSEDAGVGVGVGADG 347 Query: 346 -----------------IIDPA---VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 ID A + + +D N A+ A+ L + K D Sbjct: 348 DADAADAALEFDSAFGRTIDKAQIEFVQQMDDDFNAAGALAAIFNLVAAANKYLDA---- 403 Query: 386 NASAH------------------ILGI---------------EVCKE---HLNKNISIAI 409 A AH +LGI +V +E + +I A Sbjct: 404 -AGAHPSVALALRAADMLCELCGVLGIALTRPVQQDLPSELLDVARELAGYEGNDIDAAQ 462 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ R K ++ AD IR ++ + G ++ED Sbjct: 463 EALLSARATARSNKDWARADAIRDKISALGLVVED 497 >gi|322411055|gb|EFY01963.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 447 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 251/469 (53%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF + + + MYVCGPTVY++ HIGNAR + FD + R Y G K Sbjct: 2 IKIYDTMTRSLREFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYA-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAAQAGVS-PKE-----LSDRFIAAFMEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I +Q +I G AYE ++ F +Y + + I E ++G E Sbjct: 114 VMDYMAEIISFVQVLISKGFAYEVAGDVYFRVEKSEHYAQLANKTISELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TSLKENPLDFALWKSAKTGEVSWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKGI------IDPA 350 V+R + YR+PI+FT + + +AE+ L + + Q T K A Sbjct: 288 ---GQVLRFFLATQQYRKPINFTDKAIRDAEVNLKYLKNTFQQPLTEKADEQELKRFVTA 344 Query: 351 VLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 A+ +D NT + I + +A+ + + F + GI +E L+ + Sbjct: 345 FQDAMDDDFNTANGITVVFDMAKWINSGSYTGMVKESFEKILAVFGIIFEEEVLDAD--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F +AD +R QL ++G L D K +G R TR Sbjct: 402 -IEALIAKRQEARTNRDFVTADALRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|295676873|ref|YP_003605397.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1002] gi|295436716|gb|ADG15886.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1002] Length = 465 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 176/470 (37%), Positives = 254/470 (54%), Gaps = 45/470 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLREGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRAL-- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII+RA + + I +T + +D L P + Sbjct: 60 GYNVTYVRNITDIDDKIIKRA------VENGETIKSLTDRFIAALHEDADALGIERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A++ ++ + YG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEALEKNGYAYQASDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPDEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEQFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R + HYR P++++ + +A L++ T+ D A L Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALARL-YTALKDVTPDSAALDWNEAY 344 Query: 353 -----SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI----------- 394 +A+ +D NT A+ L +LA E + D L A +LG+ Sbjct: 345 AQRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRALGAVLGLLGREPRAYLQQ 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 AIE + R+ + K +++AD IR +L G LED Sbjct: 405 AAGAAAEGALEPAAIEAKIAARIAAKQAKDYAAADRIRAELLEAGVALED 454 >gi|251781692|ref|YP_002995994.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390321|dbj|BAH80780.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 447 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 172/470 (36%), Positives = 250/470 (53%), Gaps = 43/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPLTEKTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--AGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 60 RVNYISNFTDVDDKIIKAAAQAGVS-PKE-----LSDRFIAAFMEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I +Q +I G AYE ++ F +Y + + + E ++G E Sbjct: 114 VMDYMTEIISFVQVLIGKGFAYEVAGDVYFRVEKSEHYAQLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TSLKENPLDFALWKSAKTGEVSWDSPWGSGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS-----KGIIDP 349 V+R + YR+PI+FT + + +AEI L + P T T+ K + Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETANEQELKRFV-T 343 Query: 350 AVLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS 406 A A+ +D NT + I + +A+ + + F + GI +E L+ + Sbjct: 344 AFQDAMDDDFNTANGITVVFDMAKWINSGSYTGMVKEAFEKILAVFGIVFEEEVLDAD-- 401 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 --IEALIAKRQEARTNRDFATADAIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|315151334|gb|EFT95350.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0012] Length = 478 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 175/495 (35%), Positives = 259/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ H+GNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHLGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILTFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|59712207|ref|YP_204983.1| cysteinyl-tRNA synthetase [Vibrio fischeri ES114] gi|71657967|sp|Q5E4F1|SYC_VIBF1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|59480308|gb|AAW86095.1| cysteinyl-tRNA synthetase [Vibrio fischeri ES114] Length = 461 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 249/440 (56%), Gaps = 46/440 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVISRYLRFLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GETCDALTERLIADMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP--E 181 AT +I ++I L++ +I G AY A+N +++F+ YG SR+ +++ + G+RV E Sbjct: 114 ATEYIKEIIALVERLIERGFAYVASNGDVMFEVKKYDEYGCLSRQDLEQLQAGSRVTLEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 174 ASVKRSGMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGDHFDIHGGGSDLM 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA-------- 350 + + +R ++ HYR ++++ + L +A L + ++ +G+ + PA Sbjct: 286 YDSETVRYFLMSGHYRSQLNYSEENLNQARASLERL--YTSLRGLDLSVTPAGGEEFVGR 343 Query: 351 VLSALYNDLNTVSAIQALHKLARE----STKNHD----LLPIFNASAHILGI-----EVC 397 +A+ +D NT A L ++ARE T+N D L + A +LG+ E Sbjct: 344 FSTAMNDDFNTPEAYSVLFEMAREVNRLKTENIDTASKLGALMRELADVLGLLSQEPEAF 403 Query: 398 KEHLNKNISIA-IEKLVQER 416 + + N +A IE L++ R Sbjct: 404 LQGGSSNDDVAEIEALIKAR 423 >gi|257088530|ref|ZP_05582891.1| cysteinyl-tRNA synthetase [Enterococcus faecalis CH188] gi|256997342|gb|EEU83862.1| cysteinyl-tRNA synthetase [Enterococcus faecalis CH188] Length = 470 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 258/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIGVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|254526663|ref|ZP_05138715.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202] gi|221538087|gb|EEE40540.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202] Length = 489 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 194/509 (38%), Positives = 262/509 (51%), Gaps = 80/509 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL +++ F+ ID +++Y CG TVYD H+G+AR IV+DVL R L Y + Sbjct: 2 IKLFNTLSKRVEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIVWDVLRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E S+ ++ KN +F KD L + P P+ Sbjct: 59 KVKYVQNFTDIDDKILKRAKEESSSMKE------VSEKNIIEFHKDMDSLGIMRPDSMPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 ATNHI + I + G+AY + ++ + NYG S + I EQ + + Sbjct: 113 ATNHICNICSFITILEDKGYAYSRDGDVYYSVFKNKNYGKLSNQNIQEQNINQQGRMAND 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENSKKLNPQDFALWKKAKDDEPFFDSPWGKGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ + Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFTTIRELI-------K 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDP--- 349 S +P+ +R ++ +YR+P+DFT + L A I LS T + ID Sbjct: 285 SGISPMTLRYFVMTVNYRKPLDFTEEALRSASEAWKNINIALSFMDLTKGAFRYIDKNES 344 Query: 350 ------------------AVLSALYNDLNTVSAIQALHKLAR------------ESTK-- 377 AL NDLNT AI ++ LA+ E K Sbjct: 345 IEEEYKEKISFELSQKKLKFSEALGNDLNTAGAIAIIYDLAKPLKNFLNQFQRVEGFKID 404 Query: 378 -NHDLLPIFNAS-----AHILGIEVCKEHLNKNISIAIEK---LVQERLILLKMKKFSSA 428 N I N +LG+E KE L K I E+ L+ ERL K K ++ A Sbjct: 405 LNEKFFLIENFKTLKKLTKVLGLE--KEVLVKESKITEEEILSLINERLKAKKGKNYAKA 462 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRW 457 D IR L KG L D + +T W Sbjct: 463 DEIRNLLNEKGIEL-----IDQSKEITTW 486 >gi|281355430|ref|ZP_06241924.1| cysteinyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548] gi|281318310|gb|EFB02330.1| cysteinyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548] Length = 471 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 248/471 (52%), Gaps = 46/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ +NT++RK+ FQ ID +RMY CGPTVY+FAHIGN R + D+L R L Y+ Sbjct: 3 LQFFNTMDRKVVPFQPIDAKLVRMYTCGPTVYNFAHIGNFRAYMFEDLLRRTLEYF--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N+TD+DDK I +R +P+ + T+K Q F +D L P Sbjct: 61 PVRQVMNLTDVDDKTIRDSRA--ARLPLRE----FTAKYKQAFFEDLKTLNIEPAEVYPA 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT+HIPQMI LI ++ G AY+A ++ I F P+YG ++ + Q+ G R+ ++ Sbjct: 115 ATDHIPQMIRLISVLMEKGFAYQAEDKSIYFSIDKFPDYGKLAKIDRENQRSGVRIKNDE 174 Query: 183 YHKKNPADFILWKR--STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 Y K + ADF LWK + W+SPWG+GRPGWHIECSAMSS YLG FDIH GG+D Sbjct: 175 YAKDSVADFALWKAWDENDGDVAWDSPWGKGRPGWHIECSAMSSEYLGDQFDIHTGGIDN 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHE+EIAQS A +K N W+H L + G KMSKS GNF T+ +L + + Sbjct: 235 MFPHHEDEIAQSEAASG-KKWVNYWLHCAHLMVNGEKMSKSLGNFFTLRDLQQ------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGI-IDPAV 351 W IR ++ HYR+ ++FT + L +A L ++ + T G I V Sbjct: 288 GWKGREIRWVLIGAHYRKKLNFTFEALEQARETLGRFDEFFQRMREIAQTGDGTEISQTV 347 Query: 352 -------LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILG 393 +A+ +DLN A+ A+ L R + + D +L F I+G Sbjct: 348 AGAEQAFAAAMGDDLNISEALAAMFDLQRAANRLADAGELTAAGGAEVLAAFRKFDRIIG 407 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + L + R+ K K F +D +R ++ GFI+ED Sbjct: 408 CFEVDAVKTEEFPAEVTALAEARIEARKAKNFVESDRLRDEIAGLGFIVED 458 >gi|238019166|ref|ZP_04599592.1| hypothetical protein VEIDISOL_01029 [Veillonella dispar ATCC 17748] gi|237863865|gb|EEP65155.1| hypothetical protein VEIDISOL_01029 [Veillonella dispar ATCC 17748] Length = 497 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 176/500 (35%), Positives = 247/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 17 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 75 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E S I ++ + + L Sbjct: 76 YK-VTYVQNFTDVDDKIINTSNGEGVSW------DTIANRYIDSYFEVMDALGVQRADIY 128 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +I +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 129 PRVSTHIEDIIAMISTLIEKGYAYELDGDVYYSVDKFEHYGELSGRTLDDMEAGARIEVD 188 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 189 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 248 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 249 PHHENEIAQSEGCSGQHPSVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 301 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 302 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGPCDEAQHLL 361 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLP----------------IF 385 +A+ +D NT A ++ LA+E + + IF Sbjct: 362 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQTVTGREGVVCQEAIAEVKRIF 421 Query: 386 NASAHILGI-EVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++GI E E + E+L+Q R K+++ AD IR +L G Sbjct: 422 KFMTEVIGILEKAWEGNTGANAAEYEELMQVILSVRQACRDQKQWALADCIRDRLAEIGI 481 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 482 TIED--SPQGA----RWKKR 495 >gi|153005356|ref|YP_001379681.1| cysteinyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5] gi|171769386|sp|A7HDA1|SYC_ANADF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|152028929|gb|ABS26697.1| cysteinyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5] Length = 482 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 181/502 (36%), Positives = 260/502 (51%), Gaps = 72/502 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I I +TL E Q I+P IR Y CGPTVYD AH+G+ R +V+D++ R LR E Sbjct: 3 IVISDTLTGTKRELQPIEPGKIRFYACGPTVYDSAHVGHGRSYVVWDLVVRHLRARGYE- 61 Query: 65 CVTYVRNITDIDDKIIERA--RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRN TD+DDKII RA R+E P + ++ ++F +D L L P Sbjct: 62 -VRYVRNFTDVDDKIIRRATERREDPVA--------LAARYAREFDEDMDALGNLRPDVA 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+ + H+PQ++ +I +++ G AY A N ++ F + P+YG S+R +D+ G RV Sbjct: 113 PKVSEHVPQIVAMISSLVEKGFAYAAANGDVYFSVRAFPDYGRLSKRNLDDLLSGARVEP 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P EP W+SPWG GRPGWHIECSAM+ +LG D+HGGG DL+ Sbjct: 173 GEAKRDPLDFALWKAAKPGEPTWDSPWGGGRPGWHIECSAMTLAHLGVPIDLHGGGKDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANI----WIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 FPHH NEIAQS A +TA W+H+GF+ ++ KMSKS GNF T+ ++L KF Sbjct: 233 FPHHTNEIAQSAAAVGDGRTAESFCRHWMHHGFVEIDSEKMSKSLGNFFTLRDVL--AKF 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STS 343 A +RL L THYR PI+++ L EAE L+ + +T Sbjct: 291 -----DAEGVRLFYLGTHYRNPINYSDAILAEAERRLNYFYETLEKVDALAEGTSPAGEG 345 Query: 344 KGIIDPAVLSALYNDLNT-------VSAIQALHKLA----RESTKNHDLLPIFNASAHIL 392 G+++ A AL +D N A A + LA +++ ++ L F + Sbjct: 346 GGVVEDA-RRALDDDFNAPQVLAVLAEAFTAANALADKRGKKTPEDRARLAAFARDVREI 404 Query: 393 GIEVC---------------KEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLE 436 G + + + I A +E + ER + + F+ +D IR L Sbjct: 405 GTTLGLVQRRPAEALRAIRARAAARRGIDPASVEAKIVERAEARRARDFARSDAIRDALL 464 Query: 437 SKGFILEDYKNPDNGQRMTRWK 458 ++G L D G + T WK Sbjct: 465 AQGVALMD------GPQGTTWK 480 >gi|256618484|ref|ZP_05475330.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] gi|256598011|gb|EEU17187.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] Length = 470 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 173/492 (35%), Positives = 256/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKTFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNA 387 ++ ++ + +D N + I +++LA+ + + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQAAVSEPILVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|194468084|ref|ZP_03074070.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri 100-23] gi|194452937|gb|EDX41835.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri 100-23] Length = 470 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 259/480 (53%), Gaps = 61/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + G K Sbjct: 2 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFK-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAAEQGITVPQ------LAEKYINAFMEDTAAINIEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I ++I +Q +I G+AY + ++ + +YG S + +D+ ++G Sbjct: 114 ATENITEIIKFVQGLIEKGYAYPKDGDVYYRARKFNHYGQLSGQSLDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 174 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ +K W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 234 EFPHHENEIAQS-EAETGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------------KWPQTSTSKG 345 + V+R M T YR PI ++ LT A+ L+ + +G Sbjct: 287 -KEVDPQVLRFFMATTQYRRPIQYSQANLTAAQNNLNHIQTAFDNLTYREQDADEGDVQG 345 Query: 346 IIDP------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 + D ++A+ +D+N + I +++L + + + + ++ I+ K+ Sbjct: 346 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYAN-----VYAQQDNVNLGAIQAIKK 400 Query: 400 HLNKNISI---------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + +SI I++L++ER + K K F+ +D IR L+ +G ILED Sbjct: 401 ELVELMSIFGVKLEASDNQINDEKIKQLIEERNVARKNKDFARSDEIRDNLKKQGIILED 460 >gi|170699316|ref|ZP_02890365.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] gi|170135808|gb|EDT04087.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] Length = 465 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 175/472 (37%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRALEN------GETIKSLTDRFIGAMHEDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEKLETNGYAYQAADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D+NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQATGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALED 454 >gi|157413680|ref|YP_001484546.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215] gi|187629843|sp|A8G5S9|SYC_PROM2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157388255|gb|ABV50960.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215] Length = 489 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 193/509 (37%), Positives = 261/509 (51%), Gaps = 80/509 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL +++ F+ ID +++Y CG TVYD H+G+AR IV+D+L R L Y + Sbjct: 2 IKLFNTLSKRVEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIVWDILRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E S+ ++ KN +F KD L + P P+ Sbjct: 59 KVKYVQNFTDIDDKILKRAKEESSSMKE------VSEKNIIEFHKDMDSLGIMRPDSMPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 ATNHI + I + G+AY + ++ + NYG S + I EQ + + Sbjct: 113 ATNHICNICSFITILEDKGYAYSRDGDVYYSVFKNKNYGKLSNQNIQEQNINQQGRMAND 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENSKKLNPQDFALWKKAKDDEPFFDSPWGKGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ + Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFTTIRELI-------K 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGIIDP--- 349 S +P+ +R ++ +YR+P+DFT + L A I LS T + ID Sbjct: 285 SGISPMSLRYFVMTVNYRKPLDFTEEALRSASEAWKNINIALSFMDLTKGAFRYIDKNES 344 Query: 350 ------------------AVLSALYNDLNTVSAIQALHKLAR------------ESTK-- 377 AL NDLNT AI ++ LA+ E K Sbjct: 345 IEEEYKEKISFELSQKKLKFSEALGNDLNTAGAIAIIYDLAKPLKNFLNQFQRVEGFKID 404 Query: 378 -NHDLLPIFNAS-----AHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSA 428 N I N +LG+E KE L K I I L+ ERL K K ++ A Sbjct: 405 LNEKFFLIENFKTLEKLTKVLGLE--KEVLVKESKITEEEISSLINERLKAKKGKNYAKA 462 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRW 457 D IR L KG L D + +T W Sbjct: 463 DEIRNLLNEKGIEL-----IDQSKEITTW 486 >gi|229577911|ref|YP_002836309.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14] gi|284996496|ref|YP_003418263.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5] gi|228008625|gb|ACP44387.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14] gi|284444391|gb|ADB85893.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5] Length = 470 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 258/488 (52%), Gaps = 66/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I+IYN+L RK+ EF I+P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRIYNSLGRKLEEFNTINPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII++++ + I + T+ ++ ++L Sbjct: 60 -KGYTVIRVQNITDIDDKIIKKSQD------TGKDWNEIVNYYTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T+HI ++I +Q +I GHAY A + + FD + P+YG S K +E G Sbjct: 113 H-PRVTHHIKEIINFVQKLIDKGHAYVAPSGSVYFDVDTYPDYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ EK + W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LVFPHHENERAQTEALTG-EKWVSYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDP--------- 349 + W V+R L +HYR PIDF+ + L +A+ L + + + + II Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIKDSMAIIRNIISEGPKFYAKDD 341 Query: 350 -------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 + +A+ ND +T +A+ +H++ R + S LG + Sbjct: 342 DIKVYREILNNLDSFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLGAML 395 Query: 397 CKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E L++ + I+ +V R L +MK + +D IR++L G Sbjct: 396 AFEALSQFNEVFGVMDEEFYPTYDKMYKVIDAVVDIRNQLRQMKLYEISDKIREELLKAG 455 Query: 440 FILEDYKN 447 + D K+ Sbjct: 456 VRILDSKD 463 >gi|78779620|ref|YP_397732.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312] gi|109894919|sp|Q319Z9|SYC_PROM9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78713119|gb|ABB50296.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312] Length = 489 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 195/509 (38%), Positives = 264/509 (51%), Gaps = 80/509 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL +++ F+ ID +++Y CG TVYD H+G+AR I +DVL R L Y + Sbjct: 2 IKLFNTLSKRVEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIAWDVLRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E S+ ++ KN +F KD L + P PR Sbjct: 59 KVKYVQNFTDIDDKILKRAKEESSSMKE------VSEKNIIEFHKDMDSLGIMRPDSMPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ---KMGTRVPE 181 ATNHI + I + G+AY + ++ + NYG S + I EQ K G E Sbjct: 113 ATNHICNICSFITILEDKGYAYSRDGDVYYSVFKNKNYGKLSNQNIQEQNINKQGRMANE 172 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + +KK NP DF LWK++ EP ++SPWGRGRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENNKKQNPQDFALWKKAKNDEPFFDSPWGRGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ + Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFKTIRELI-------K 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDP--- 349 S +P+ +R ++ +YR+P+DFT + L A + LS T + ID Sbjct: 285 SGISPMTLRYFVMTVNYRKPLDFTEEALRSAAEAWKNINLALSFMDLTKGAFRSIDKNES 344 Query: 350 ------------------AVLSALYNDLNTVSAIQALHKLAR------------ESTK-- 377 AL NDLNT AI ++ LA+ E K Sbjct: 345 IEEEYKEKLSFELSQKKLKFSEALGNDLNTAGAIAIIYDLAKPLKNFLNQFQRIEGLKID 404 Query: 378 -NHDLLPIFNAS-----AHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSA 428 N + N +LG++ KE L K I I L+ ERL K K ++ A Sbjct: 405 LNEKFFLLENFKTLEKLTEVLGLK--KEVLVKERKITEEEISSLINERLKAKKGKNYAKA 462 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRW 457 D IR L+ KG L D + +T W Sbjct: 463 DEIRNLLKEKGIEL-----IDQSKEITTW 486 >gi|139474431|ref|YP_001129147.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] gi|134272678|emb|CAM30949.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] Length = 447 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 170/462 (36%), Positives = 252/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV-PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G R+ E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRIDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + L +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKALHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARTNRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|159899627|ref|YP_001545874.1| cysteinyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159892666|gb|ABX05746.1| cysteinyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 466 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 176/472 (37%), Positives = 246/472 (52%), Gaps = 45/472 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F + ++ MYVCGPTVY AHIG+A +VFDV+ R L + Sbjct: 3 LAIYNTLTRQTEPFTPLVADHVSMYVCGPTVYSDAHIGHAMSAVVFDVVRRYLEW--SGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII RA ++ D + + S T F+ +L L T PR Sbjct: 61 TVRHVMNFTDVDDKIIRRANEQG-----RDPMELAESY-TLAFLDQLGQLNVLPATAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + IPQ+I I+ +I AY A+N ++ F + +YG SRR +D+ + G R+ Sbjct: 115 VSTTIPQIIQFIEGLIAKDAAYHASNGDVYFRVRADEDYGKLSRRAVDDMRSGARIAPDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK + P EP WESPWG+GRPGWHIECSAMS H L + DIHGGG DLIFP Sbjct: 175 AKDDPLDFALWKSAKPGEPAWESPWGQGRPGWHIECSAMSLHELAEQIDIHGGGNDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + A +W+HNG L L G KMSKS GN ITI++ L Sbjct: 235 HHENEIAQTESLTG-KNFAQVWMHNGMLQLAGEKMSKSLGNLITIDQFLSEHS------- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------WPQTSTSKGIIDP 349 A ++RL +L YR P+ + + L + + L + P T I+ Sbjct: 287 ADIMRLLVLSGSYRAPLVYNDEVLADTQRKLERIMSALKPAHGTATNGPVVETLNAIVAK 346 Query: 350 A---VLSALYNDLNTVSAIQALHKLARESTKNHDL----LPIFNASAH------ILGIEV 396 A +A+ +D N+ +A+ L L R D P A +LG+ + Sbjct: 347 APADFRAAMDSDFNSAAALAVLFDLVRSINAARDAGVGGEPFAAGQARLRELAAVLGLRL 406 Query: 397 CKEHLNK-NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +K + + IE L++ R L K K+++ +D +R +L LED N Sbjct: 407 EAPSASKTDAAPFIELLIELRAELRKAKQWALSDLVRNRLSELDVQLEDSPN 458 >gi|19746854|ref|NP_607990.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] gi|24418689|sp|Q8NZD1|SYC_STRP8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|19749094|gb|AAL98489.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] Length = 447 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 250/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++E+L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHEMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|197334356|ref|YP_002156417.1| cysteinyl-tRNA synthetase [Vibrio fischeri MJ11] gi|197315846|gb|ACH65293.1| cysteinyl-tRNA synthetase [Vibrio fischeri MJ11] Length = 460 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 169/440 (38%), Positives = 249/440 (56%), Gaps = 46/440 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LR+ + Sbjct: 1 MKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVISRYLRFLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + D L P +PR Sbjct: 60 -LTFVRNITDIDDKIIKRAAEN------GETCDALTERLIADMHADFDALNMKRPDVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP--E 181 AT +I +++ L++ +I G AY A+N +++F+ YG SR+ +++ + G+RV E Sbjct: 113 ATEYIKEIVALVERLIERGFAYVASNGDVMFEVKKYDEYGRLSRQDLEQLQAGSRVTLEE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 173 ASVKRSGMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGDHFDIHGGGSDLM 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 233 FPHHENEIAQSCCAHDT-PYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------H 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPA-------- 350 + + +R ++ HYR ++++ + L +A L + ++ +G+ + PA Sbjct: 285 YDSETVRYFLMSGHYRSQLNYSEENLNQARASLERL--YTSLRGLDLSVTPAGGEEFVGR 342 Query: 351 VLSALYNDLNTVSAIQALHKLARE----STKNHD----LLPIFNASAHILGI-----EVC 397 +A+ +D NT A L ++ARE T+N D L + A +LG+ E Sbjct: 343 FSTAMNDDFNTPEAYSVLFEMAREVNRLKTENLDTASKLGALMRELADVLGLLSQEPEAF 402 Query: 398 KEHLNKNISIA-IEKLVQER 416 + + N +A IE L++ R Sbjct: 403 LQGGSSNDDVAEIEALIKAR 422 >gi|227826502|ref|YP_002828281.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus M.14.25] gi|229583664|ref|YP_002842165.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus M.16.27] gi|227458297|gb|ACP36983.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus M.14.25] gi|228018713|gb|ACP54120.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus M.16.27] Length = 470 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 258/488 (52%), Gaps = 66/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I+IYN+L RK+ EF I+P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRIYNSLGRKLEEFNTINPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII++++ + I + T+ ++ ++L Sbjct: 60 -KGYTVIRVQNITDIDDKIIKKSQD------TGKDWNEIVNYYTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T+HI ++I +Q +I GHAY A + + FD + P+YG S K +E G Sbjct: 113 H-PRVTHHIKEIINFVQKLIDKGHAYVAPSGSVYFDVDTYPDYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ EK + W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LVFPHHENERAQTEALTG-EKWVSYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI--------------LLSKWPQTSTSKG 345 + W V+R L +HYR PIDF+ + L +A+ ++S+ P+ Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIKDSMAIIRNIISEGPKFYAKDD 341 Query: 346 IIDP---------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 I + +A+ ND +T +A+ +H++ R + S LG + Sbjct: 342 DIKAYREILNNLDSFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLGAML 395 Query: 397 CKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E L++ + I+ +V R L +MK + +D IR++L G Sbjct: 396 AFEALSQFNEVFGVMDEEFYPTYDKMYKVIDAVVDIRNQLRQMKLYEISDKIREELLKAG 455 Query: 440 FILEDYKN 447 + D K+ Sbjct: 456 VRILDSKD 463 >gi|123968849|ref|YP_001009707.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. AS9601] gi|187629849|sp|A2BS39|SYC_PROMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123198959|gb|ABM70600.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. AS9601] Length = 489 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 192/512 (37%), Positives = 264/512 (51%), Gaps = 86/512 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL +K+ F+ ID +++Y CG TVYD H+G+AR I +DVL R L Y + Sbjct: 2 IKLFNTLSKKVEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIAWDVLRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E S+ ++ KN +F KD L + P PR Sbjct: 59 KVKYVQNFTDIDDKILKRAKEESSSMKE------VSEKNIIEFHKDMDSLGIMRPDSMPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ---KMGTRVPE 181 ATNHI + I + G+AY + ++ + NYG S + + EQ + G V E Sbjct: 113 ATNHICNICSFITILEDKGYAYSRDGDVYYSVFKNKNYGKLSNQNLQEQNINQQGRMVNE 172 Query: 182 KYHKK-NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + KK NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENSKKLNPQDFALWKKAKDDEPFFDSPWGKGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ + Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFKTIRELI-------K 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---PAVLS--- 353 S +P+ +R ++ +YR+P+DFT + L A W + + +D A +S Sbjct: 285 SGISPMTLRYFVMTVNYRKPLDFTEEALRSAS---EAWKNINVALSFMDLTKGAFISIDK 341 Query: 354 -------------------------ALYNDLNTVSAIQALHKLAR--------------- 373 AL NDLNT AI ++ LA+ Sbjct: 342 NESIEEKYKEKISFELSQKKLKFSEALGNDLNTAGAIAIIYDLAKPLKNFLNQFQRVEGF 401 Query: 374 --ESTKNHDLLPIFNA---SAHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKF 425 E + LL F +LG++ KE L K I I L+ ERL K + Sbjct: 402 TVELNEKFFLLENFKTLEKLTEVLGLK--KEVLVKESKIKEEEISSLINERLKAKMEKNY 459 Query: 426 SSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + AD IR L+ KG L D + +T W Sbjct: 460 AKADEIRNLLKEKGIEL-----IDQSKEITTW 486 >gi|227829111|ref|YP_002830890.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15] gi|227455558|gb|ACP34245.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15] Length = 470 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 258/488 (52%), Gaps = 66/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I+IYN+L RK+ EF I+P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRIYNSLGRKLEEFNTINPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII++++ + I + T+ ++ ++L Sbjct: 60 -KGYTVIRVQNITDIDDKIIKKSQD------TGKDWNEIVNYYTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T+HI ++I +Q +I GHAY A + + FD + P+YG S K +E G Sbjct: 113 H-PRVTHHIKEIINFVQKLIDKGHAYVAPSGSVYFDVDTYPDYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ EK + W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LVFPHHENERAQTEALTG-EKWVSYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDP--------- 349 + W V+R L +HYR PIDF+ + L +A+ L + + + + II Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIKDSMAIIRNIISEGPKFYAKDD 341 Query: 350 -------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 + +A+ ND +T +A+ +H++ R + S LG + Sbjct: 342 DIKVYREILNNLDSFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLGAML 395 Query: 397 CKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E L++ + I+ +V R L +MK + +D IR++L G Sbjct: 396 AFEALSQFNEVFGVMDEEFYPTYDKMYKVIDAVVDIRNQLRQMKFYEISDKIREELLKAG 455 Query: 440 FILEDYKN 447 + D K+ Sbjct: 456 VRILDSKD 463 >gi|116493238|ref|YP_804973.1| cysteinyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] gi|122265298|sp|Q03E41|SYC_PEDPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116103388|gb|ABJ68531.1| cysteinyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] Length = 470 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 257/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNT+ R F+ + + MYVCGPTVY++ HIGNAR +I FD + R Y E Sbjct: 2 IKIYNTMSRTKETFKPLVDHKVSMYVCGPTVYNYIHIGNARSIIAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I AR++ ++P + + F +D + T PR Sbjct: 61 -VKFVSNFTDVDDKMINSAREQGITVPE------LADRYIGAFKEDVQAVNVEPATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I +I I +++ G AY + ++ + YG+ S + IDE + G Sbjct: 114 ATENIDDIIAFIADLMDKGFAYAVDGDVYYRARKFSKYGALSHQNIDELEQGASQHVDDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E W++PWG GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETARKEDPIDFALWKAAKGDEIAWKAPWGTGRPGWHIECSVMSTKYLGDTFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A ++ A W+HNGF+ + + KMSKS GNF+T+++L++ Sbjct: 234 QFPHHENEIAQS-EAKTGKQFARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLVQ----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA 350 V+R M T YR PI +T L +A+ L K ++G D Sbjct: 288 --KINPQVLRFLMSTTQYRRPIQYTQASLQDAKNNLEKLQNAFINLNYRLQGAQGAADAT 345 Query: 351 V-----------LSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFNAS 388 V ++A+ +D N + I +++ AR + + + LL + Sbjct: 346 VAEQAAQLETDFITAMDDDFNAQNGITVVYEFARLINVYSEKTAVNAEQINQLLTSYAKM 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A + GIE+ + +N I++LV++R + F ++D +R QL+ G ILED P Sbjct: 406 AAVFGIELKQ---IENDDAEIDELVKQRDQARADRDFETSDRLRNQLKEMGVILED--TP 460 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 461 ----QGTRWRKK 468 >gi|56808516|ref|ZP_00366253.1| COG0215: Cysteinyl-tRNA synthetase [Streptococcus pyogenes M49 591] gi|209560085|ref|YP_002286557.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes NZ131] gi|209541286|gb|ACI61862.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes NZ131] Length = 447 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 250/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYIGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++E+L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHEMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|22536391|ref|NP_687242.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|77405339|ref|ZP_00782434.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae H36B] gi|30316157|sp|Q8E1Z4|SYC_STRA5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|22533218|gb|AAM99114.1|AE014201_12 cysteinyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|77176017|gb|EAO78791.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae H36B] Length = 447 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 171/473 (36%), Positives = 257/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + + K F++D L T Sbjct: 57 CGYQVNYISNFTDVDDKIIKGAAEAGMDTKS------FSDKFISAFMEDVAALGVKPATK 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 PR +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G RV Sbjct: 111 NPRVIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRV 170 Query: 180 P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DGEGEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT++++L Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML----- 283 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 +S VIR + YR+P++FT + + +AE+ L K+ + + + I + Sbjct: 284 --KSVDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNL-KYLKNTFNLPIQENANDEELEQ 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNK 403 A A+ +D NT + I + ++A+ H + F I GI +E L+ Sbjct: 341 FVKAFQGAMDDDFNTANGITVIFEMAKWINSGHYTSRVKETFAELLEIFGIVFQEEVLDA 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IE L+++R + F++AD IR +L +G L D K +G R TR Sbjct: 401 D----IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTK---DGVRWTR 446 >gi|295425605|ref|ZP_06818292.1| cysteine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] gi|295064621|gb|EFG55542.1| cysteine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] Length = 486 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 177/506 (34%), Positives = 267/506 (52%), Gaps = 81/506 (16%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ +K++NTL RK EF+ + P I MYVCGPTVY++ HIGNAR +I FD + R Y Sbjct: 10 EQAVKVFNTLSRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYR- 68 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G K V YV N TD+DDK+I AR E+ ++P + + +++DT L T Sbjct: 69 GYK-VKYVSNFTDVDDKMINEARAENTTVPK------LAERYINAYLEDTEALNVEPATL 121 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-- 179 PRAT+ I ++I ++ +I G+AYE + ++ + +YG S + I + + G Sbjct: 122 HPRATHEIKEIIAFVKELIAKGYAYEVDGDVYYRAKKFADYGKLSDQNIAQLEEGASEHI 181 Query: 180 --PEKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGG Sbjct: 182 NDTEQQRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGG 241 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 G DL FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T+++++ Sbjct: 242 GQDLEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDII-- 298 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------S 341 + V+R M YR I+++ L +A+++L ++ T S Sbjct: 299 -----KEVDPQVLRFFMASVQYRRQINYSEDNLKQAQVILERFKNTLTNINYRLEDDTAS 353 Query: 342 TSKGIIDPAVL-------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA----- 389 + AV A+ +D N +A+ A+ ++LLP+ NA+ Sbjct: 354 QEDAALKQAVAQTKLKFEQAMDDDFNVQNALTAI----------YELLPVVNANTNLANV 403 Query: 390 ----------------HILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADY 430 +I GI+ C + + S I+ LV++R K K ++++D Sbjct: 404 DKTELKQFKKLLCQWLNIFGID-CDKLVATKASAEDEQIDALVKKRDEARKNKDWATSDQ 462 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTR 456 IR+QL+ G ++D P G R TR Sbjct: 463 IREQLKKMGITIQD--TP-QGTRWTR 485 >gi|310644226|ref|YP_003948985.1| translation initiation factor if-1 [Paenibacillus polymyxa SC2] gi|309249177|gb|ADO58744.1| Translation initiation factor IF-1 [Paenibacillus polymyxa SC2] Length = 467 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 176/491 (35%), Positives = 258/491 (52%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ R F ++P ++MYVCGPTVYD+ HIGNARP+IVFDV+ L Y + Sbjct: 3 LQIYNTMTRSREPFVPLEPGKVKMYVCGPTVYDYIHIGNARPVIVFDVVRSYLEYLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I +AR+ + +P + K + +D L A + PR Sbjct: 62 -VNYVVNFTDVDDKLIRKARELNMEVPA------VAEKFIAAYHEDLAGLNVPAASINPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I++++ G+AYE + ++ + T +YG S + ++E + G R+ Sbjct: 115 VTESMDLIIDFIKDLVDKGYAYENDGDVFYRTKKFKDYGQLSGQNLEELQFGIRINVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DF+LWK + P E W SPWG GRPGWHIECSAM+ HYLG DIHGGG DL FPH Sbjct: 175 KENAEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARHYLGDTLDIHGGGQDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E AQS + + W+HNG++ ++ KMSKS GN I + +L K Sbjct: 235 HECECAQSEVITG-KPLSRYWMHNGYIRIDNEKMSKSLGNGILVKDLRARHK-------P 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE------------------ILLSKWPQTSTSKGI 346 +R ML THYR P+++ + +++AE I L + S + Sbjct: 287 EALRYFMLSTHYRNPLNYNQETMSQAENSVERIANAVANVKHRLAIALKGNEEVSAELQM 346 Query: 347 IDPAVLSA----LYNDLNTVSAIQALHK--------LARESTKNHDL---LPIFNASAHI 391 +L + +D NT AI A+ + L R+ +L L F++ + Sbjct: 347 KLDGILQQFGEKMDDDFNTPDAITAVFEWVSEANLLLQRDVVNQAELQAVLHTFHSMNTV 406 Query: 392 LGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 L I E +E L+ + E+L+ ER+ K K + AD IR L +KG +LE D Sbjct: 407 LRIYSEPSEELLDGEV----EQLIAERVEARKTKNWGRADEIRDLLATKGIVLE-----D 457 Query: 450 NGQRMTRWKQK 460 Q M RW++K Sbjct: 458 TAQGM-RWRRK 467 >gi|329765327|ref|ZP_08256907.1| cysteinyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138233|gb|EGG42489.1| cysteinyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 463 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 188/474 (39%), Positives = 256/474 (54%), Gaps = 58/474 (12%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+ +TL + Q +D S +++Y+CG TVYD +HIG+AR +IVFDVL + L E Sbjct: 1 MKLQDTLSNSV---QTLDISKEVKIYLCGVTVYDESHIGHARTIIVFDVLRKYLESKGIE 57 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +++N TD+DDKII RA+ E N I+SK + + KD L ++ P Sbjct: 58 --VNFIQNFTDVDDKIINRAKLE------NTTAEQISSKYIENYYKDFDGLNVKRASNYP 109 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT HI + I+ +I AY + N + F S YG S++KIDE + G R+ Sbjct: 110 KATEHIKDIENFIEKLIQKDIAYVSKNGVYFSVSKFSQYGKLSKKKIDELQSGARIEVDE 169 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF LWK S ++P W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DLIFP Sbjct: 170 AKKDPLDFALWKFSN-VKPIWDSPWGKGRPGWHIECSAMSIKYLGENFDIHGGGRDLIFP 228 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS ++ A IW+H G + + G KMSKS GN +I +L+ +W Sbjct: 229 HHENEIAQSESFTS-KQFAKIWMHVGMVTINGEKMSKSLGNIRSIKHVLD-------NWG 280 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------------KGII 347 VIRL L HY +PID++ + L E L+KW Q K II Sbjct: 281 PNVIRLFCLSGHYSKPIDYSEELLKEN---LTKWRQAEICFYELIHANNENSNTDIKSII 337 Query: 348 DPAVL---SALYNDLNTVSAIQALHKLARE---------STKNH--DLLPIFNASAHILG 393 + +AL +DLNT A+ + KL +E +K H ++P ILG Sbjct: 338 EKTSREFNNALESDLNTHLALSSFFKLIKEINYLAAEEKISKKHAESVIPELERMMKILG 397 Query: 394 IEVCK-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + K H K I ++ ER L K KKF AD IR +L L D+K Sbjct: 398 LVIPKITHEEKQ---EINNMISEREQLRKEKKFQDADKIRDRLNEMNIELIDHK 448 >gi|33240685|ref|NP_875627.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|61216289|sp|Q7VB63|SYC_PROMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33238213|gb|AAQ00280.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 499 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 191/517 (36%), Positives = 269/517 (52%), Gaps = 83/517 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ NTL R+ F ++ P + +Y CG TVYD H+G+AR IV+DVL R Y+ + Sbjct: 3 LKLTNTLTRRTETFSSLKPGEVSIYCCGVTVYDLCHLGHARSYIVWDVLRR---YFIAQG 59 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +V+N TDIDDKI+ RA +E N ++ ++ +N ++F +D L L P P Sbjct: 60 YKVKFVQNFTDIDDKILARASKE------NCTMNEVSERNIEEFHRDMDALGILRPDRMP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPE 181 RAT + ++ +I+ + G AY A ++ F NYG S+R + EQ++ RV + Sbjct: 114 RATRCLEEIKSMIEELEKKGAAYSAEGDVYFAVMKHANYGKLSKRDLSEQQLNADGRVTD 173 Query: 182 K--YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K K+NP DF LWK + E + SPWG GRPGWHIECSAM LG+ DIH GG D Sbjct: 174 KEEARKQNPFDFALWKAAKEGEQSFPSPWGAGRPGWHIECSAMVLQELGETIDIHLGGAD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A+ +K A W+HNG +N+ G+KMSKS GNF TI LL+ Sbjct: 234 LIFPHHENEIAQSEVANG-KKLAKYWLHNGMVNVGGQKMSKSLGNFTTIRALLK------ 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLS---------KWPQ---- 339 A +RL +L HYR+P+DFT + L A ++L WP+ Sbjct: 287 EGISAMTLRLFILQAHYRKPLDFTKESLDAASTGWKRLNVILCLGLMKHQTLNWPKPNIQ 346 Query: 340 ----TSTSKGIIDPAV-------LSALYNDLNTVSAIQALHKLAR--------------- 373 TS SK ++ + + AL ND+NT AI L +LAR Sbjct: 347 ESKITSLSKHSLNETLNLSRQQFIDALNNDINTSVAISILFELARPLRSLSNQIENGSSE 406 Query: 374 ---ESTK--NHDLLPIFNASAHILGI--EVCKEHLNKNIS----IAIEKLVQERLILLKM 422 ES K ++ + A++LG+ E+ K +K + I + +QER Sbjct: 407 LISESDKHTSYSRWLLLTELANVLGLQAELPKTRTSKQSQNLDEVLIREAIQERKDAKLS 466 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 F+ AD IR++L KG L D K+ +T W Q Sbjct: 467 GDFAKADKIREELNLKGVQLIDKKDG-----VTEWIQ 498 >gi|239816065|ref|YP_002944975.1| cysteinyl-tRNA synthetase [Variovorax paradoxus S110] gi|259511846|sp|C5CPX0|SYC_VARPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239802642|gb|ACS19709.1| cysteinyl-tRNA synthetase [Variovorax paradoxus S110] Length = 459 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 180/463 (38%), Positives = 244/463 (52%), Gaps = 40/463 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R++ EF + P +RMYVCG TVYD H+G+AR MI FD++ R L+ Sbjct: 3 LRIYNTLSRELEEFSPLQPGRVRMYVCGMTVYDLCHLGHARSMIAFDLVQRWLKA--SGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I +T + +D L PTH+PR Sbjct: 61 AVTYVRNITDIDDKIIRRAVEN------GETIRSLTDRMIDALHEDADALGIERPTHEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++IPQM+ +I + G AY A N ++ + P YG S + IDE G RV Sbjct: 115 ATDYIPQMLSMIGTLEKKGLAYRAENGDVNYAVRKFPGYGKLSGKSIDELHAGERVAVLD 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P D +LWK + P EP W S +G GRPGWHIECSAM+ LG+ DIHGGG DL Sbjct: 175 GKDDPLDPVLWKSAKPSEPEEVKWASEFGPGRPGWHIECSAMACELLGETLDIHGGGEDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN W+HNGF+ + KMSKS GNF I ++L + Sbjct: 235 QFPHHENEIAQSEGATG-KPLANYWMHNGFIVTDNEKMSKSLGNFFLIRDVL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPAVL 352 + A IR ++ HYR P++++ L +A L + PQ + DP Sbjct: 287 KYDAETIRFFVVRAHYRRPLNYSDVHLDDARASLKRLYTSLDLVAPQALAAIDWNDPYAA 346 Query: 353 ---SALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVCKEHLNKN 404 +A+ D T A+ L LA E + LL +IL + K L Sbjct: 347 RFKAAMDEDFATPEAVAVLFDLAGEVNRTQSPAQAGLLKALGGCLNILQDD-PKRFLRAG 405 Query: 405 ISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ I+ + R K F+ AD IR L ++G +L+D Sbjct: 406 TTLDEATIQAQIDARAAAKAAKNFAEADRIRNDLLAQGIVLKD 448 >gi|229580812|ref|YP_002839211.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51] gi|228011528|gb|ACP47289.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51] Length = 470 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 174/488 (35%), Positives = 258/488 (52%), Gaps = 66/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I++YN+L RK+ EF I+P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRVYNSLGRKLEEFNTINPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII++++ + I + T+ ++ ++L Sbjct: 60 -KGYTVIRVQNITDIDDKIIKKSQD------TGKDWNEIVNYYTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T+HI ++I +Q +I GHAY A + + FD + P+YG S K +E G Sbjct: 113 H-PRVTHHIKEIINFVQKLIDKGHAYVAPSGSVYFDVDTYPDYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ EK + W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LVFPHHENERAQTEALTG-EKWVSYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDP--------- 349 + W V+R L +HYR PIDF+ + L +A+ L + + + + II Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIKDSMAIIRNIISEGPKFYAKDD 341 Query: 350 -------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 + +A+ ND +T +A+ +H++ R + S LG + Sbjct: 342 DIKVYREILNNLDSFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLGAML 395 Query: 397 CKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E L++ + I+ +V R L +MK + +D IR++L G Sbjct: 396 AFEALSQFNEVFGVMDEEFYPTYDKMYKVIDAVVDIRNQLRQMKLYEISDKIREELLKAG 455 Query: 440 FILEDYKN 447 + D K+ Sbjct: 456 VRILDSKD 463 >gi|25010277|ref|NP_734672.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae NEM316] gi|77407940|ref|ZP_00784691.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae COH1] gi|30316158|sp|Q8E7F2|SYC_STRA3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|23094629|emb|CAD45847.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae NEM316] gi|77173487|gb|EAO76605.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae COH1] gi|319744134|gb|EFV96507.1| cysteine--tRNA ligase [Streptococcus agalactiae ATCC 13813] Length = 447 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/473 (36%), Positives = 258/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + + K F++D L T Sbjct: 57 CGYQVNYISNFTDVDDKIIKGAAEAGMDTKS------FSDKFISAFMEDVAALGVKPATK 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 PR +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G RV Sbjct: 111 NPRVIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRV 170 Query: 180 P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DGEGEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT++++L Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML----- 283 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 +S VIR + YR+P++FT + + +AE+ L K+ + + + I + Sbjct: 284 --KSVDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNL-KYLKNTFNLPIQENANDEELEQ 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNK 403 A A+ +D NT + I + ++A+ H + A +L GI +E L+ Sbjct: 341 FVKAFQEAMDDDFNTANGITVIFEMAKWINSGHYTSKVKETLAELLEIFGIVFQEEVLDA 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IE L+++R + F++AD IR +L +G L D K +G R TR Sbjct: 401 D----IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTK---DGVRWTR 446 >gi|308171985|ref|YP_003918690.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|307604849|emb|CBI41220.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|328551795|gb|AEB22287.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens TA208] gi|328910056|gb|AEB61652.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens LL3] Length = 466 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 259/488 (53%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRKKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P ++ + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------VSERFIKAYFEDVGALGCRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +I + +I G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VMENMDAIIEFVSELIKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKDGEISWDSPWGKGRPGWHIECSAMVKKYLGDEIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS KT A W+HNG++N++ KMSKS GNF+ +++++ + + Sbjct: 235 HENEIAQSEAL--TGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIID------- 348 ++R ML HYR PI+++ + L + + ++ +S + D Sbjct: 286 PQLLRFFMLSVHYRHPINYSEELLEKTKNAFNRLKTAYSNLNHRLISSTNLTDNDDEWLA 345 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH---DLLPIFNASAHI 391 A A+ +D NT +AI LA+ ++T +H + +F+ + Sbjct: 346 KIEEHRTAFEEAMDDDFNTANAISVWFDLAKLANYYMQEDNTADHVIKAFISMFDRIGSV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + + + + IE+L+++R + + F+ +D IR QL+S ILED Sbjct: 406 LGLTLGE---EELVDEEIEELIEKRNEARRNRDFALSDQIRDQLKSMNIILED------T 456 Query: 452 QRMTRWKQ 459 + TRWK+ Sbjct: 457 AQGTRWKR 464 >gi|118587321|ref|ZP_01544748.1| cysteinyl-tRNA synthetase [Oenococcus oeni ATCC BAA-1163] gi|118432310|gb|EAV39049.1| cysteinyl-tRNA synthetase [Oenococcus oeni ATCC BAA-1163] Length = 467 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 176/488 (36%), Positives = 259/488 (53%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT K EF+ I P I MYVCGPTVY++ H+GNAR I FD + R L Y + Sbjct: 2 LKVFNTATLKKEEFKPIVPGKITMYVCGPTVYNYIHVGNARSSIAFDTIRRYLLYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII RA++E S + I SK + F +DT L + T + R Sbjct: 61 -VNFVSNFTDVDDKIINRAQEEGVSE------NAIASKYIKAFYEDTKPLNIIPATTRTR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT IP +I + ++I G+AYE+ ++ F NYG + +++ ++G R+ + Sbjct: 114 ATEVIPDIIEFVSDLIDKGYAYESRGDVYFRVRKAGNYGLLAHENLEDLEVGASGRLDDG 173 Query: 183 YH--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK W+SPWG+GRPGWHIECS MS+ YLG DIHGGG+DL Sbjct: 174 ALALKEDPLDFALWKNEPRQVIKWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH +E+AQS A ++ + W+HNGF+N+ KMSKS GNF T++ELL Sbjct: 234 AFPHHTDEMAQS-EAHTGKQFVHYWLHNGFVNVNNEKMSKSLGNFTTVHELLS------- 285 Query: 301 SWPAPV-IRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTST 342 S+ P+ IR M THYR PI+++ +RL A+ + PQ Sbjct: 286 SYDDPMAIRFLMTATHYRRPINYSSSELERARVELDRIRTAYRRLKNADFKIGDDPQIDQ 345 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------------ 390 A + A+ +D N +A+ A+ +L R + D + + SA Sbjct: 346 LVSKQTAAFVEAMDDDFNVANALAAIFELVRLANSYVDSGDVKDKSAQEILRQIAELIGV 405 Query: 391 --ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+E KE L K I + ++K R+ K + +D +R ++ S G+ + D Sbjct: 406 FGISGLETKKESLPKKIELLLKKRETARI----NKNWQQSDQLRDEIFSLGYKVSD---S 458 Query: 449 DNGQRMTR 456 NGQ++ + Sbjct: 459 SNGQQVRK 466 >gi|323214246|gb|EFZ99004.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 310 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/324 (45%), Positives = 203/324 (62%), Gaps = 17/324 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRL 327 A +R ++ HYR ++++ + L Sbjct: 286 AETVRYFLMSGHYRAKLNYSEENL 309 >gi|320105196|ref|YP_004180787.1| cysteinyl-tRNA synthetase [Isosphaera pallida ATCC 43644] gi|319752478|gb|ADV64238.1| cysteinyl-tRNA synthetase [Isosphaera pallida ATCC 43644] Length = 497 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 181/514 (35%), Positives = 249/514 (48%), Gaps = 81/514 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++NTL + + ++P +RMYVCGPTVY +H+G+ ++FD L R L Y + Sbjct: 3 IHLHNTLSQTKEPLRTLEPGKVRMYVCGPTVYSASHVGHMVGPVIFDTLKRFLTYRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITDIDDK+I +A ++ ++ + + T +VK L H P+ Sbjct: 62 -VTWVVNITDIDDKLIVQANKDGVTV------KSLAEQVTADYVKCLEALGVDGIDHMPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ + Q +I G+AY + ++ FD + YG S R + G RV H Sbjct: 115 ATEHIDHILEMTQGLIDKGYAYASGGDVYFDVTKAEEYGKLSHRDPEALLAGNRVEPSSH 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWG GRPGWHIECSAMS LG DIHGGGLDL+FPH Sbjct: 175 KRHPGDFALWKAAKPGEPFWESPWGPGRPGWHIECSAMSRSLLGDQIDIHGGGLDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+ QS C + A W+HNG L +GRK+SKS+ + I + L K + Sbjct: 235 HENEVVQSECFTGRKPFATFWLHNGLLTKDGRKISKSDPDTIVLMRDLLGK------YQP 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------------PQTSTSK 344 +R LM HYR P D+ QRL E E L + PQT S+ Sbjct: 289 DTLRALFLMGHYRRPTDYGNQRLDEIERGLQAFFIFSERFERITGRSFYTLPAPQTD-SE 347 Query: 345 GIIDPA--------------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA- 389 G DP L AL +D NT L +L R + D + + A A Sbjct: 348 GEFDPGDSDFLKTIRDHRLKFLEALDDDFNTGGGFGELFELLRTLNRFADRVGLERADAP 407 Query: 390 --------HILGIEVCKEHL----------------NKNISIAIEKLVQE-RLILLKMKK 424 G+ V +E + ++ + +LV + R L K K Sbjct: 408 HRADALAQFERGVTVLRELTRLFGLFRAAPRSKTTGDDQLTAGLMRLVIDLRASLRKEKN 467 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 F+ AD IR++L LED G TRW+ Sbjct: 468 FALADEIRRRLAELNVTLED------GPGGTRWR 495 >gi|313893308|ref|ZP_07826883.1| cysteine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313442204|gb|EFR60621.1| cysteine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 482 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 176/500 (35%), Positives = 245/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E S I ++ + + L Sbjct: 61 YK-VTYVQNFTDVDDKIINTSNGEGVSW------DTIANRYIDSYFEVMDALGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +I +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIEDIIAMISTLIEKGYAYELDGDVYYSVDKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPAVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGPCDEAQRLL 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLP----------------IF 385 +A+ +D NT A ++ LA+E + + IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQAVTGREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILGI-EVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++GI E E + E+L+Q R K++ AD IR +L G Sbjct: 407 KFMTEVIGILEKAWEGNTGANAAEYEELMQVILSVRQACRDQKQWGLADCIRDRLSEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 467 TIED--SPQG----ARWKKR 480 >gi|50915009|ref|YP_060981.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] gi|61216145|sp|Q5X9W5|SYC_STRP6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50904083|gb|AAT87798.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] Length = 447 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 253/461 (54%), Gaps = 40/461 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE--VCKEHLNKNIS 406 A A+ +D NT + I + +A+ P+ +A +L + V +E + + Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIVFEEEV---LE 399 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 400 VDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|15899047|ref|NP_343652.1| cysteinyl-tRNA synthetase [Sulfolobus solfataricus P2] gi|284175285|ref|ZP_06389254.1| cysteinyl-tRNA synthetase [Sulfolobus solfataricus 98/2] gi|21264020|sp|Q97WE6|SYC_SULSO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13815580|gb|AAK42442.1| Cysteinyl-tRNA synthetase (cysS) [Sulfolobus solfataricus P2] gi|261600795|gb|ACX90398.1| cysteinyl-tRNA synthetase [Sulfolobus solfataricus 98/2] Length = 470 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 254/491 (51%), Gaps = 72/491 (14%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I++YN+L RK+ EF ++P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRVYNSLGRKLEEFGTVEPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII+++++ I + I T+ ++ ++L Sbjct: 60 -RGYTVIRVQNITDIDDKIIKKSQE------IGKDWNEIVDYFTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T HI ++I +Q +I GHAY A + + FD + PNYG S K +E G Sbjct: 113 H-PRVTQHIREIIDFVQRLIDKGHAYVAPSGSVYFDVDTYPNYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENE AQ+ EK W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LIFPHHENERAQTEALIG-EKWVTYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------- 352 + W V+R L +HYR PIDF+ + L +A+ L + S II + Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQR---IKDSMAIIRDVISEGPKFYV 338 Query: 353 -------------------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 +A+ ND +T +A+ +H++ R + S LG Sbjct: 339 KDDDIKVYREILNNLNNFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLG 392 Query: 394 IEVCKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLE 436 + E L + + I+ +V R L +MK + +D IR++L Sbjct: 393 AMLAFETLKQFNEVFGVMDEEFYPTYDKMYKIIDAVVDIRNQLRQMKLYEISDKIREELL 452 Query: 437 SKGFILEDYKN 447 G + D K+ Sbjct: 453 KAGVRILDSKD 463 >gi|94989286|ref|YP_597387.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94993175|ref|YP_601274.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] gi|94542794|gb|ABF32843.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94546683|gb|ABF36730.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] Length = 447 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 250/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDSEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|154684612|ref|YP_001419773.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42] gi|187629789|sp|A7Z0L6|SYC_BACA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154350463|gb|ABS72542.1| CysS [Bacillus amyloliquefaciens FZB42] Length = 466 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 258/487 (52%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y + Sbjct: 3 ITLYNTLTRKKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P ++ + + + +D L C PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------VSERFIKAYFEDVGALGCRKADLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +I + +I G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 115 VMENMDAIIEFVSELIKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDALDFALWKAAKDGEISWDSPWGKGRPGWHIECSAMVKKYLGDEIDIHAGGQDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIID-------- 348 ++R ML HYR PI+++ + L + + ++ +S + D Sbjct: 287 QLLRFFMLSVHYRHPINYSEELLEKTKNAFNRLKTAYSNLNHRLISSTNLTDNDEEWLAK 346 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH---DLLPIFNASAHIL 392 A A+ +D NT +AI LA+ ++T +H + +F+ +L Sbjct: 347 IEEHRTAFEEAMDDDFNTANAISVWFDLAKVANYYMQEDNTADHVIKAFISMFDRIGSVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + + + + IE+L+++R + + F+ +D IR QL+S ILED Sbjct: 407 GLTLGE---EELVDEEIEELIEKRNEARRNRDFALSDQIRDQLKSMNIILED------TA 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|323473579|gb|ADX84185.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus REY15A] gi|323476226|gb|ADX81464.1| cysteinyl-tRNA synthetase [Sulfolobus islandicus HVE10/4] Length = 470 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 174/488 (35%), Positives = 258/488 (52%), Gaps = 66/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +I+IYN+L RK+ EF I+P+ ++MYVCGPTVYD+ HIG+ R +VFD + R LR Sbjct: 1 MDFRIRIYNSLGRKLEEFNTINPNLVKMYVCGPTVYDYVHIGHGRTFVVFDAISRYLRL- 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+NITDIDDKII++++ + I + T+ ++ ++L Sbjct: 60 -KGYTVIRVQNITDIDDKIIKKSQD------TGKDWNEIVNYYTKDYLDMLSQLKVKIDI 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H PR T+HI ++I +Q +I GHAY A + + FD + P+YG S K +E G Sbjct: 113 H-PRVTHHIKEIINFVQKLIDKGHAYVAPSGSVYFDVDTYPDYGELSNTKKEEWNQGEEF 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 ++ KK+ DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG D Sbjct: 172 VKE--KKHSYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGERFDIHGGGAD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ EK + W+H+ F+ + KMSKS GN I +NE + Sbjct: 230 LVFPHHENERAQTEALTG-EKWVSYWVHSAFVTIRKEKMSKSLGNIIPLNEAI------- 281 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDP--------- 349 + W V+R L +HYR PIDF+ + L +A+ L + + + + II Sbjct: 282 KKWGPSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIKDSMAIIRNIISEGPKFYAKDD 341 Query: 350 -------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 + +A+ ND +T +A+ +H++ R + S LG + Sbjct: 342 DIKVYREILNNLDSFHTAMSNDFDTSTALSYIHEIVRL------VFSTLQYSRDFLGAML 395 Query: 397 CKEHLNKNISI-----------------AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 E L++ + I+ +V R L +M+ + +D IR++L G Sbjct: 396 AFEALSQFNEVFGVMDEEFYPTYDKMYKVIDAVVDIRNQLRQMRLYEISDKIREELLKAG 455 Query: 440 FILEDYKN 447 + D K+ Sbjct: 456 VRILDSKD 463 >gi|21911208|ref|NP_665476.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS315] gi|28896585|ref|NP_802935.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes SSI-1] gi|25009287|sp|Q8K5T7|SYC_STRP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21905420|gb|AAM80279.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS315] gi|28811839|dbj|BAC64768.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes SSI-1] Length = 447 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 250/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TDIDDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDIDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|332097289|gb|EGJ02270.1| cysteinyl-tRNA synthetase [Shigella dysenteriae 155-74] Length = 435 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 177/457 (38%), Positives = 255/457 (55%), Gaps = 48/457 (10%) Query: 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPS 89 +CG TVYD HIG+ R + FDV+ R LR+ G K + YVRNITDIDDKII+RA + Sbjct: 1 MCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK-LKYVRNITDIDDKIIKRANEN--- 55 Query: 90 IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEAN 149 ++ + + + KD L L P +PRAT+HI ++I L + +I GHAY A+ Sbjct: 56 ---GESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHITEIIELTEQLIAKGHAYVAD 112 Query: 150 N-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 N +++FD + P YG SR+ +D+ + G RV K+NP DF+LWK S EP W SPW Sbjct: 113 NGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPW 172 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAM+ LG FDIHGGG DL+FPHHENEIAQS CA + N W+H+ Sbjct: 173 GAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHS 231 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 G + ++ KMSKS GNF T+ ++L + + A +R ++ HYR ++++ + L Sbjct: 232 GMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNYSEENLK 284 Query: 329 EAEILLSK-WPQTSTSKGIIDPA--------VLSALYNDLNTVSAIQALHKLAREST--K 377 +A L + + + + PA + A+ +D NT A L +ARE K Sbjct: 285 QARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLK 344 Query: 378 NHDLLPIFNASAH------ILG-IEVCKEHLNKNISIA-------IEKLVQERLILLKMK 423 D+ ++H +LG +E E ++ + A IE L+Q+RL K K Sbjct: 345 AEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAK 404 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++AD R +L G +LED G + T W++K Sbjct: 405 DWAAADAARDRLNEMGIVLED------GPQGTTWRRK 435 >gi|227879317|ref|ZP_03997183.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|262047597|ref|ZP_06020552.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] gi|227861086|gb|EEJ68739.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|260572173|gb|EEX28738.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] Length = 477 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 179/503 (35%), Positives = 268/503 (53%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAEKFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E GW+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIGWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------------K 344 R V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTVTNINYRLADDTASEES 347 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+++ A+ +D N +A+ A+ +DLLP+ NA+A+ Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAI----------YDLLPVVNANANAARADKQ 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N I+ LV++R K ++++D IR Sbjct: 398 ELQKFKEKLASWLLVFGVDTNKLCVKNAGSN-DDEIDALVKKRDEARANKDWATSDQIRD 456 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 457 QLKEMGITIQD--TP-QGTRWTR 476 >gi|147918862|ref|YP_687412.1| cysteinyl-tRNA synthetase [uncultured methanogenic archaeon RC-I] gi|110622808|emb|CAJ38086.1| cysteinyl-tRNA synthetase [uncultured methanogenic archaeon RC-I] Length = 473 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 176/479 (36%), Positives = 258/479 (53%), Gaps = 56/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL + + +FQ +D ++MYVCGPTVYD+ H+G+AR IVFDV+ R L Y + Sbjct: 6 LRFYNTLTQTVEDFQPLDDRKVKMYVCGPTVYDYCHMGHARSYIVFDVIRRHLLYRGYD- 64 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKI++RA++ +N + ++ K + +D RL + H PR Sbjct: 65 -VTYVQNFTDVDDKILKRAKE------LNVDPTELSRKFIAAYFEDIDRLNVMRADHYPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-IPNYGSFSRRKIDEQKMGTRVPEKY 183 T + +I +I+ ++ G+AYE+ + F + G S + D K+G R+ Sbjct: 118 VTEFMDPIIGIIKALVDKGYAYESMGSVYFSIDRMVSEVGVLSHQTYDSLKVGARIEVDE 177 Query: 184 HKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK + P E W+SPWG+GRPGWHIEC+AMS LG+ DIHGGG+DLIF Sbjct: 178 RKRNPMDFVLWKAAKPGESLSWDSPWGKGRPGWHIECTAMSVKLLGEQIDIHGGGMDLIF 237 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EI QS A WIHNGFL + KMSKS GNF I ++L+ + Sbjct: 238 PHHESEILQSEAYTGKVPFAKYWIHNGFLLVNKEKMSKSLGNFFLIRDILQ-------KY 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV----------L 352 +R +L T+Y+ P+DF+ L EA+ L++ T + I D A + Sbjct: 291 SPETVRFFILNTNYQGPLDFSDAGLEEAKKSLARIQNTVSD--ITDRAGKTDQKGSDQDI 348 Query: 353 SALY------------NDLNTVSAIQALHKLARESTKNHDLLPIFNAS------------ 388 SAL N+ +T AI + + R T N L F+A Sbjct: 349 SALIAESKARFDEHMDNNFSTREAIAEIFEFTR--TVNRLLRGSFSADEAKQIAGLYDHF 406 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ILGI E ++ + KL+ + R + K K + ++D IR +L+ G LED K Sbjct: 407 SNILGIRWETEQKEDMLADELMKLIIDIRAAVRKKKDYETSDLIRSRLKDLGITLEDTK 465 >gi|119719811|ref|YP_920306.1| cysteinyl-tRNA synthetase [Thermofilum pendens Hrk 5] gi|187631645|sp|A1RYM3|SYC_THEPD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119524931|gb|ABL78303.1| cysteinyl-tRNA synthetase [Thermofilum pendens Hrk 5] Length = 474 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 185/493 (37%), Positives = 260/493 (52%), Gaps = 65/493 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R + F+ ++ + +YVCGPTVYD++H+G+AR + FDV+ R LR + Sbjct: 2 LRVYNTLSRSLEVFEPVEEGRVSIYVCGPTVYDYSHVGHARTYVAFDVIKRYLRLRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+NITDIDDKII RAR E D I+ + T+ +++ +L L H PR Sbjct: 61 -VVHVQNITDIDDKIINRARDEG-----RDWREIV-DEYTKDYLEALQKLRVLVDVH-PR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HI ++I +Q +I GHAY A + + FD + P+YG S R ++KM ++ Sbjct: 113 VTEHISEIIDFVQKLIDSGHAYVAPSGSVYFDVDTYPDYGRLSGRL--DKKMWSQEEFAS 170 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFP Sbjct: 171 EKKNPYDFALWKARKPGEPYWDSPWGPGRPGWHIECSVMSSKYLGRRFDIHGGGTDLIFP 230 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS + W+H G L + G KMSKS N + + +L RS+ Sbjct: 231 HHENERAQSEALFGEKPWVKYWMHTGMLQVRGEKMSKSLKNIVPLRDLF-------RSYD 283 Query: 304 APVIRLAMLMTHYREPIDFT----------VQRL-------------TEAEILLSKWPQT 340 V+RL + HYR + F+ +QRL E E LS W + Sbjct: 284 PLVVRLWLATAHYRTVLQFSDEVLEQAKSNLQRLRGAVQLLKNLAKEVEPEGRLSDW-EL 342 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKL-----ARESTKNHDLLP-----IFNAS 388 + ++D +++ +D N A A+ KL ++ S K LL +F Sbjct: 343 GVFREMLDARREFYASMDDDFNASGAFAAVMKLTGLVYSQVSAKPTYLLVLRALRLFEEF 402 Query: 389 AHILGIEVCKEHLNKNISIAIEKL----VQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ L + +++L V+ R L + K + ADYIR +L S G L Sbjct: 403 NRVLGVLDEDLALGAAEVLPVDELLDLIVEVRAKLREQKNYELADYIRSKLSSLGVQL-- 460 Query: 445 YKNPDNGQRMTRW 457 D G++ TRW Sbjct: 461 ---MDQGEK-TRW 469 >gi|309787051|ref|ZP_07681663.1| cysteinyl-tRNA synthetase [Shigella dysenteriae 1617] gi|308924629|gb|EFP70124.1| cysteinyl-tRNA synthetase [Shigella dysenteriae 1617] Length = 437 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 178/459 (38%), Positives = 254/459 (55%), Gaps = 48/459 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD HIG+ R + FDV+ R LR+ G K + YVRNITDIDDKII+RA + Sbjct: 1 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK-LKYVRNITDIDDKIIKRANEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 ++ + + + KD L L P +PRAT+HI ++I L + +I GHAY Sbjct: 58 -----GESFVALVDRMIAEMHKDFNALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYV 112 Query: 148 ANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 +N +++FD + P YG SR+ +D+ G RV K+N DF+LWK S EP W S Sbjct: 113 VDNGDVMFDVPTDPTYGVLSRQDLDQLLAGARVDVVDDKRNTMDFVLWKMSKEGEPSWPS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAM+ LG FDIHGGG DL+FPHHENEIAQS CA + N W+ Sbjct: 173 PWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H+G + ++ KMSKS GNF T+ ++L + + A +R ++ HYR ++++ + Sbjct: 232 HSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDAETVRYFLMSGHYRSQLNYSEEN 284 Query: 327 LTEAEILLSK-WPQTSTSKGIIDPA--------VLSALYNDLNTVSAIQALHKLAREST- 376 L +A L + + + + PA + A+ +D NT A L +ARE Sbjct: 285 LKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNR 344 Query: 377 -KNHDLLPIFNASAH------ILG-IEVCKEHLNKNISIA-------IEKLVQERLILLK 421 K D+ ++H +LG +E E ++ + A IE L+Q+RL K Sbjct: 345 LKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARK 404 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K +++AD R +L G +LED G + T W++K Sbjct: 405 AKDWAAADAARDRLNEMGIVLED------GPQGTTWRRK 437 >gi|306826617|ref|ZP_07459922.1| cysteine--tRNA ligase [Streptococcus pyogenes ATCC 10782] gi|304431195|gb|EFM34199.1| cysteine--tRNA ligase [Streptococcus pyogenes ATCC 10782] Length = 447 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 250/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|229550658|ref|ZP_04439383.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|229304224|gb|EEN70220.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] Length = 478 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 174/495 (35%), Positives = 256/495 (51%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITPPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPI 384 ++ ++ + +D N + I +++LA+ + + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQAAVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|326693476|ref|ZP_08230481.1| cysteinyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773] Length = 470 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 179/490 (36%), Positives = 256/490 (52%), Gaps = 57/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ F+ + P + MYVCGPTVY++ HIGNAR I FDV+ R Y Sbjct: 2 IQVYNTLSREKEVFKPLTPGKVSMYVCGPTVYNYIHIGNARSAIAFDVIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RAR+E D ++I +K F DT L T + R Sbjct: 60 TVKYVSNFTDVDDKIIKRAREEGV-----DEMTI-ANKYADAFHADTLPLNIKPATIRSR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT IP +I +Q++I G+AYE+ ++ F YG + + + E Sbjct: 114 ATEVIPDIITFVQDLIDKGYAYESAGDVYFRAKQFKGYGILAHQDLTEMAANAAGRLDDA 173 Query: 181 EKYHKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF +WK S + W SPWG GRPGWHIECS MS YLGK D+HGGG+D Sbjct: 174 EQIRKEDPIDFAVWKASRDTDKISWASPWGNGRPGWHIECSVMSQKYLGKTIDVHGGGID 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NEIAQS A +K N W+HNGF+N++ KMSKS GNF T++++L Sbjct: 234 LAFPHHTNEIAQS-EARTGQKFVNYWLHNGFVNVDNEKMSKSLGNFTTLHDMLT------ 286 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------PQTST 342 + P+ IR + THYR PI++ L +A L + Q + Sbjct: 287 -DYDDPMAIRYLLATTHYRRPINYAPDTLAQARAALERIRTGYRNLQFRLADAVPGQDTA 345 Query: 343 SKGIIDPAVLS---ALYNDLNTVSAIQALHKLAR------ESTKNHD-----LLPIFNAS 388 + I V + A+ +D N +A+ A+ +L E+T +D LL Sbjct: 346 LETTIQQQVEAFELAMDDDFNVPNAVAAIFELITLANTYAEATTVYDNTVKTLLTTIETL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI+ ++++ +L+ R I + + ++D +R QL++ G I+ED P Sbjct: 406 MGVLGIDGLSG--TSDLTVEQRRLIDARAIARTSQDYQTSDELRDQLKTLGIIIED--TP 461 Query: 449 DNGQRMTRWK 458 GQR R K Sbjct: 462 -QGQRWHRAK 470 >gi|172061028|ref|YP_001808680.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MC40-6] gi|229558620|sp|B1YSM8|SYC_BURA4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171993545|gb|ACB64464.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MC40-6] Length = 465 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 175/472 (37%), Positives = 249/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIDDKIIRRALEN------GETIKSLTDRFIGAMHEDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEKLETNGYAYQAADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ + P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVQPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D+NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDINTPVAVATLFELAGEVNRTCDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQATGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALED 454 >gi|289679397|ref|ZP_06500287.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5] Length = 299 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 145/314 (46%), Positives = 196/314 (62%), Gaps = 17/314 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYR 317 V+R ++ +H R Sbjct: 286 PEVVRYLLVSSHSR 299 >gi|29374703|ref|NP_813855.1| cysteinyl-tRNA synthetase [Enterococcus faecalis V583] gi|61216301|sp|Q839V5|SYC_ENTFA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29342161|gb|AAO79927.1| cysteinyl-tRNA synthetase [Enterococcus faecalis V583] Length = 470 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 258/492 (52%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + P + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +L + DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLEETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 234 FPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI---- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 290 ----PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PIFNA 387 ++ ++ + +D N + I +++LA+ ++T + +L +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED--T 460 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 461 PQG----TRWRR 468 >gi|76787565|ref|YP_328938.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae A909] gi|77410936|ref|ZP_00787292.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae CJB111] gi|109894950|sp|Q3K3G5|SYC_STRA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|76562622|gb|ABA45206.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae A909] gi|77162991|gb|EAO73946.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae CJB111] Length = 447 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 170/473 (35%), Positives = 256/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + + K F++D L T Sbjct: 57 CGYQVNYISNFTDVDDKIIKGAAEAGMDTKS------FSDKFISAFMEDVAALGVKPATK 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 PR +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G RV Sbjct: 111 NPRVIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRV 170 Query: 180 P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG+GRPGWHIECS M++ G DIHGGG Sbjct: 171 DGEGEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEIFGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT++++L Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML----- 283 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 +S VIR + YR+P++FT + + +AE+ L K+ + + + I + Sbjct: 284 --KSVDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNL-KYLKNTFNLPIQENANDEELEQ 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNK 403 A A+ +D NT + I + ++A+ H + F I GI +E L+ Sbjct: 341 FVKAFQGAMDDDFNTANGITVIFEMAKWINSGHYTSRVKETFAELLEIFGIVFQEEVLDA 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IE L+++R + F++AD IR +L +G L D K +G R TR Sbjct: 401 D----IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTK---DGVRWTR 446 >gi|313889588|ref|ZP_07823232.1| cysteine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313122015|gb|EFR45110.1| cysteine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 447 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/468 (35%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + I MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLKENQISMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + S P + K + F+ DT L + PR Sbjct: 60 HVNYISNFTDVDDKIIKAAAEAGIS-P-----KALADKFIEAFMADTKELGIKPASQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I +Q +I G AYE+ ++ F + NY + + + + ++G E Sbjct: 114 VMDYMGEIIAFVQALIQKGFAYESAGDVYFRVTKSENYARLANKTLADLEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPW +GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKPGEISWDSPWSKGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS A + AN W+HNGF+ ++ KMSKS GNF+T++E+LE S Sbjct: 234 FPHHTNEIAQS-EAKTGQTFANYWMHNGFVKVDNEKMSKSLGNFVTVHEMLE-------S 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIID--PAV 351 ++R + YR+PI+FT + + +AE+ L T S + + D + Sbjct: 286 VDGQILRFFLATQQYRKPINFTEKAIRDAEVNLKYLKNTYLLPLQTGSDTSRLFDFKKSF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D N + I + A+ H + F + GI +E L+ + Sbjct: 346 KEAMDDDFNAANGITVIFDFAKWINSGHYDQTVKTAFGEMLEVFGIVFQEEVLDSD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +E L+ ER + F+ AD IR L S+G L D K +G R TR Sbjct: 402 VEALIAERQAARAARDFTKADSIRDHLASQGIKLLDTK---DGVRWTR 446 >gi|256849116|ref|ZP_05554549.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] gi|256713892|gb|EEU28880.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] Length = 477 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 179/503 (35%), Positives = 268/503 (53%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAEKFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E GW+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIGWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------------K 344 R V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTVTNINYRLAYDTASEES 347 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+++ A+ +D N +A+ A+ +DLLP+ NA+A+ Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAI----------YDLLPVVNANANAARADKQ 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N I+ LV++R K ++++D IR Sbjct: 398 ELQKFKEKLASWLLVFGVDTNKLCVKNAGSN-DDEIDALVKKRDEARANKDWATSDQIRD 456 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 457 QLKEMGITIQD--TP-QGTRWTR 476 >gi|222612964|gb|EEE51096.1| hypothetical protein OsJ_31805 [Oryza sativa Japonica Group] Length = 561 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 178/539 (33%), Positives = 267/539 (49%), Gaps = 118/539 (21%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY--- 60 ++++++T + F+ + MYVCG T YD++H+G+AR + FDVL+R L+Y Sbjct: 21 ELRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYLKYLGFE 80 Query: 61 ---------------------------YGEKCV---------TYVRNITDIDDKIIERAR 84 Y +C+ ++ I D+ KII+RA Sbjct: 81 IIKRANEAGEDALSLSSRFIDEFHRDMYELQCLPPTHEPRVTKHIEQIIDLITKIIKRAN 140 Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 + DA+S+ +S+ +F +D L CL PTH+PR T HI Q+I LI I+ +G Sbjct: 141 EAG-----EDALSL-SSRFIDEFHRDMYELQCLPPTHEPRVTKHIEQIIDLITKIMDNGK 194 Query: 145 AYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 AY ++ F + P+Y S S RK+D+ + GTRV K+NPADF LWK + EP W Sbjct: 195 AYTIEGDVYFSVDNFPDYLSLSGRKVDQNRPGTRVAVDARKRNPADFALWKSAKEGEPSW 254 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 ESPWGRGRPGWHIECSAMS+HYLG +FDIHGGG DLIFPHHENE+AQS A E Sbjct: 255 ESPWGRGRPGWHIECSAMSAHYLGNIFDIHGGGKDLIFPHHENELAQSQAA-YPESEVKC 313 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID--- 321 W+HNGF+N +G+KM+K++ NF TI +++ + +RL ++ THYR ++ Sbjct: 314 WMHNGFVNKDGQKMAKADKNFFTIRDIISL-------YHPMALRLFLMRTHYRSDVNHSD 366 Query: 322 -----------FTVQRLTEAEILLSKWPQTSTSKGIIDPA------------VLSALYND 358 + Q L + E +S + + I PA L + +D Sbjct: 367 TALQFASGRLYYIYQTLHDGEETVSLYGEHKLENSI--PADDQKLIEENRSNFLEKMSDD 424 Query: 359 LNTVSA---------------------------------IQALHKLARESTKNHDLLPIF 385 L+T +A IQAL L E T +L + Sbjct: 425 LHTTAALDHLMKLQQKLEHQKKKQSQKQQQQQQKKPEDYIQALVALQNEVTDKLSILGLM 484 Query: 386 NASAHILGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 S+ L ++ + L + A +++++++R + K K F+ +D IR +L + G L Sbjct: 485 PMSS--LAEQLKDKALKRAGMTAEQLQQMIEQRTLARKNKDFAESDRIRTELSALGIAL 541 >gi|148642328|ref|YP_001272841.1| cysteinyl-tRNA synthetase, CysS [Methanobrevibacter smithii ATCC 35061] gi|148551345|gb|ABQ86473.1| cysteinyl-tRNA synthetase, CysS [Methanobrevibacter smithii ATCC 35061] Length = 448 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 177/466 (37%), Positives = 250/466 (53%), Gaps = 44/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+TL R F+ ++ + I ++VCGPTVYD AHIG+ R I FD + R + Y Sbjct: 1 MEIYSTLTRSKETFETMNDNRINLFVCGPTVYDDAHIGHGRTYISFDTIKRY--WEYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITD+DDKII+R+++ IP D I K +++++D +L R Sbjct: 59 TVFYIQNITDVDDKIIKRSKE--TGIPAGD----IAKKFEKRYIEDMAKLNVTGVNLFAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+ ++I IQ +I G AYE + + F + +G S R I+E + + K Sbjct: 113 ATDHMGEIIDQIQRLIDKGFAYETEDGVYFGIDNFKEFGKLSNRNIEELESHREIA-KTT 171 Query: 185 KKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK R EP W SPWG GRPGWHIE +A++ +Y G +D+HGGGLDLIFP Sbjct: 172 KKNPIDFALWKKRENVDEPVWNSPWGEGRPGWHIEDTAITEYYFGPQYDVHGGGLDLIFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE EI Q N W+H GFLN+ G KMSKS NFITI ELL + + Sbjct: 232 HHEAEITQMEAVSGKSPMVNYWLHTGFLNVSGEKMSKSLNNFITIRELL-------KEYD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGIIDPAV---------- 351 A V R +L THYR PIDF+ + L ++E L K + S II+ A Sbjct: 285 ADVFRFFVLSTHYRSPIDFSKESLHQSEKSLDKIKKYYESLECEIIENATSDYAPLKIAK 344 Query: 352 ---LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---------HILGIE-VCK 398 ++ +D NT AI A+ L +S D L + SA ILGI+ V K Sbjct: 345 EEFFKSMDDDFNTPKAIAAIFGLINDSKSEIDSLADEDVSAIREFLDDVGFILGIDFVLK 404 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + V++ L K++ +D IR QL G+ + D Sbjct: 405 DTGSSDELLTLISDVRQE--LRNNKQYELSDKIRNQLTDLGYEISD 448 >gi|163783157|ref|ZP_02178151.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159881491|gb|EDP75001.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 489 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 172/511 (33%), Positives = 263/511 (51%), Gaps = 77/511 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K+ EF ++P + +Y CG TVYD +H+G+ R +IVFD R L + + Sbjct: 1 MKIHNTLTGKVEEFVPVNPPKVLIYTCGVTVYDDSHVGHGRSLIVFDTFRRFLEHLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII RA++E D ++I ++ + +D + +PR Sbjct: 60 -VTFVRNFTDVDDKIINRAKEE-----CTDFMTI-ANRYIASYYRDMEAIRVKPADVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +++ +IQ++I G+AYE++ ++ F S +YG S+R +E + G RV Sbjct: 113 VTEHMKEIVDVIQSLIEKGYAYESDGDVYFSVRSFKDYGKLSKRSPEEMEAGARVEPSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL+FPH Sbjct: 173 KRDPLDFALWKSAKAGEPSWDSPWGKGRPGWHTECVAMIFKHLGETIDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HNG + + G+KMSKS GN++T+ E+ + Sbjct: 233 HENEIAQAEAVTG-KPFARYWMHNGLVTVGGQKMSKSLGNYVTLKEIY-------TKYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA--------------EIL--LSKWPQTSTSKGIID 348 ++RL +L THYR P+DF+ +++ E E+L L P + + D Sbjct: 285 DILRLLVLFTHYRSPLDFSWEKMEETQRAYDRLKGAIEDYEVLKELEVIPGKGGAHPLYD 344 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLARE--STKNHDLLP----------------- 383 + +L +D NT A+ + L E KN Sbjct: 345 KVKEVEESFFESLSDDFNTPEALSHIFSLVSELGKVKNRTYSEGKIDESELGAYEYASRF 404 Query: 384 IFNASAHILGI-----------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSAD 429 + N I G+ V + L + ++ L++ R + + K+F AD Sbjct: 405 LLNTLKKIFGLLEDLYPECEVRRVVERELEAGEVLDTKLVDLLIEVRTLARQEKQFRIAD 464 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR +L+ G LED P TRWK++ Sbjct: 465 LIRDRLKELGIELED--TPAG----TRWKKR 489 >gi|332992532|gb|AEF02587.1| cysteinyl-tRNA synthetase [Alteromonas sp. SN2] Length = 460 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 170/481 (35%), Positives = 255/481 (53%), Gaps = 49/481 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT R +F + + +YVCG TVY+ +H+G+AR + FD+L R LR+ + Sbjct: 2 LHLYNTRTRDKAKFVPLQEGKVGLYVCGITVYNLSHMGHARTYLSFDILVRYLRHLGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + + +T + +D + L P +P Sbjct: 61 -VKYVRNITDIDDKIIARANEN------GETFEALTKRTIGMMHEDFAAINLLEPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + H+ +I +I+ ++ G AY+A+N +++FD S P YG S++ +D+ + G+RV Sbjct: 114 VSGHMDDIIDIIKILMDKGFAYQASNGDVLFDVSKFPEYGKLSKQDLDQLQSGSRVEVAL 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP W+SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 DKNDPLDFVLWKPAKAGEPAWQSPWGEGRPGWHIECSAMNKKHLGAHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEK-TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENE+AQSCCA +K N+W+H G + ++ KMSKS GNF T+ ++L+ Sbjct: 234 HHENEVAQSCCA--FDKPYVNVWMHAGMVQVDDEKMSKSLGNFFTLRDVLQEHD------ 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPAVL 352 A +R ++ HYR + ++ +T+A+ L + T S G Sbjct: 286 -AETLRFFLMSAHYRSQLSYSQDNITQAKAALERLYTALRGVTVDESTDLSYGGYLARFE 344 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKEHL---- 401 +A+ +DLN A L +ARE +N D L + ILG+ Sbjct: 345 AAMNDDLNVPEAFSVLFDVAREINRNKDNAEEASKLAAVLKGLGAILGMLQSDPDAYLKG 404 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + + IE L+++R K +++AD R L +K +LED G T W+ Sbjct: 405 GSENDDEAAEIEALIKQRNDARAAKDWAAADAARDALNAKNIVLED------GPAGTTWR 458 Query: 459 Q 459 + Sbjct: 459 R 459 >gi|325958959|ref|YP_004290425.1| cysteinyl-tRNA synthetase [Methanobacterium sp. AL-21] gi|325330391|gb|ADZ09453.1| cysteinyl-tRNA synthetase [Methanobacterium sp. AL-21] Length = 467 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 173/483 (35%), Positives = 256/483 (53%), Gaps = 59/483 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT+ R+ F+ I+ + ++++VCGPTVYD++HIG+AR I FDV+ R ++Y Sbjct: 2 IKLYNTMTRRKEIFEPIEGNRVKLFVCGPTVYDYSHIGHARTYISFDVIVRYMKY--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+NITD+DDKI++RA + S P+ + + +++++D L R Sbjct: 60 SVFYVQNITDLDDKILKRADELETS-PLE-----LARRYEEKYLRDMELLGVEHVNLYAR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+++ I ++ G+AYE + + FD S ++G S R +++ + R+ Sbjct: 114 ATEHIPEIVRQIGVLVDKGYAYETDKGVYFDESKFEDFGKLSNRNLEDLNV-HRIGPDSS 172 Query: 185 KKNPADFILWKR----STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF LWK+ S E W+SPWG GRPGWHIE +A++ Y G +DIHGGGLDL Sbjct: 173 KRNPGDFALWKKRERISEEQEMIWDSPWGTGRPGWHIEDTAITETYFGPQYDIHGGGLDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHE EIAQ + I+ W+H GFLN++G KMSKS GNFITINELLE Sbjct: 233 IFPHHEAEIAQMEASSGIKPMVRYWMHTGFLNVKGEKMSKSLGNFITINELLE------- 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRL----------------------TEAEILLSKWP 338 + V R +L THYR PIDF+ + L ++ I L Sbjct: 286 EYSPEVFRFFVLSTHYRSPIDFSSEILHQSSQGLNRIYKLIEKINSELDSDTNISLDNDS 345 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-HD----------LLPIFNA 387 + A+ ND NT +AI + L R+ ++ H+ L I Sbjct: 346 DYIQKLAAVREEFFEAMDNDFNTPAAISTIFDLIRDVNRDIHESNISKNSLTKLKAIIIE 405 Query: 388 SAHILGIEVCKE----HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 ++LG++ E + + + K V+E+ L + K + +D IR +L LE Sbjct: 406 FGYVLGLDFSMEPENEENLEVELLDLLKYVREK--LRQNKNWELSDQIRDRLNELNITLE 463 Query: 444 DYK 446 D K Sbjct: 464 DKK 466 >gi|297563235|ref|YP_003682209.1| cysteinyl-tRNA synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847683|gb|ADH69703.1| cysteinyl-tRNA synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 467 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 244/472 (51%), Gaps = 49/472 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ Y+T R++ EF + +Y+CG TV HIG+ R + FD+L R L + + Sbjct: 2 SLRFYDTSARQVREFVPLREGAASLYLCGATVQAPPHIGHIRSGVNFDILRRWLTHLGYD 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+ RN+TDIDDKII A E +P ++ +N + F L CL PT +P Sbjct: 62 --VTFCRNVTDIDDKIIRVASDE--GVPWWQ----VSERNQRAFTHAYEILGCLPPTVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT H+P+MI L+ +I GHAY A++ ++ FD S P YG S +++D+ Sbjct: 114 RATGHVPEMIDLMHRLIDAGHAYAASDGSGDVYFDVRSYPPYGGLSNQRLDQVVESADCD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK + P EP W +PWGRGRPGWH+ECSAM++ YLG FDIHGGGLDL Sbjct: 174 ADRDKRDPRDFALWKGAKPGEPSWHTPWGRGRPGWHLECSAMATKYLGPSFDIHGGGLDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENE+AQS A + A W+HNG L + G KMSKS GN + I +++ + Sbjct: 234 VFPHHENELAQSRAAG--DGFAQYWLHNGLLVVGGEKMSKSLGNSLLIPQMVRKVR---- 287 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK----GIIDPAV---- 351 PV +R + HYR ID++ L EA + T G + PA Sbjct: 288 ----PVELRYYLGQVHYRSVIDYSDAALQEAATAYQRIEGFLTRAVEVLGEVAPAADVPA 343 Query: 352 --LSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKEH 400 SAL +DL A+ +H RE + ++ +LG++ E Sbjct: 344 EFASALNDDLGVSQALAVVHGHVREGNTALAAGGKEQAAEIAGELRTMLGVLGLDPLGEQ 403 Query: 401 --------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + + +++R K +++AD IR QL G ++ED Sbjct: 404 WATGGDQGLREVVDALVAVALEQRQAARGRKDYAAADAIRDQLAGAGVVVED 455 >gi|163791190|ref|ZP_02185607.1| cysteinyl-tRNA synthetase [Carnobacterium sp. AT7] gi|159873521|gb|EDP67608.1| cysteinyl-tRNA synthetase [Carnobacterium sp. AT7] Length = 468 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 172/492 (34%), Positives = 249/492 (50%), Gaps = 63/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK F I+ +RMYVCGPTVY++ HIGNAR + FD + R L Y + Sbjct: 2 LKIYNTLTRKKEAFIPIEEGKVRMYVCGPTVYNYIHIGNARSTVAFDTVRRYLEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A++ + + P + K + +DT L +H PR Sbjct: 61 -VNYVSNFTDVDDKIIRTAKELNLTAPE------VADKFIAAYHEDTHALGVEEASHHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 ++P +I I +I +AYE + ++ + T NYG S IDE ++G Sbjct: 114 VMENMPDIIDFIAVLIEKEYAYEVDGDVYYRTRKFKNYGELSDISIDELEVGASNRLNAQ 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E WESPWG GRPGWHIECS M++ YLG DIH GG DL Sbjct: 174 ENNKKEDPLDFALWKAAKEAEINWESPWGPGRPGWHIECSVMATKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A+ W+HNGF+ ++ KMSKS GNF+ +++++ + Sbjct: 234 AFPHHENEIAQSE-AKTGHPFAHYWMHNGFVTMDNEKMSKSLGNFVLVHDII-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------WP 338 ++R M T YR PI ++ + EA L+K Sbjct: 286 QVDPQILRFFMATTQYRRPISYSETTIEEARANLTKITMAFDNVTYRLKDAAAVGEDDQE 345 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNA 387 Q S K + ++ + +D N+ + I ++++A+ + +L F Sbjct: 346 QISQFK-LFKENFVTEMDDDFNSANGITVIYEMAKAMNIYSERTVVSKVVLEAMLHQFQE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + GI + L + IE+L++ER K F +D IR QL+ +G IL+D Sbjct: 405 LVQVFGITFGETEL---LDETIEQLIEERNAARAAKNFQRSDDIRDQLKEEGIILDD--T 459 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 460 PQG----TRWRR 467 >gi|94995145|ref|YP_603243.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] gi|94548653|gb|ABF38699.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] Length = 447 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 250/462 (54%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLHKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKD 440 >gi|323126489|gb|ADX23786.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 447 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 172/470 (36%), Positives = 249/470 (52%), Gaps = 43/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPLTEKTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEY--AGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 60 RVNYISNFTDVDDKIIKAAAQAGVS-PKE-----LSDRFIAAFMEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +++ ++I +Q +I G AYE ++ F +Y + + + E ++G E Sbjct: 114 VMDYMTEIISFVQVLIEKGFAYEVAGDVYFRVEKSEHYAQLANKTLSELEVGASGRTDVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TSLKENPLDFALWKSAKTGEVSWDSPWGSGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS-----KGIIDP 349 V+R + YR+PI+FT + + +AEI L + P T T+ K + Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETANEQELKRFV-T 343 Query: 350 AVLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS 406 A A+ +D NT + I + +A+ + F + GI +E L+ + Sbjct: 344 AFQDAMDDDFNTANGITVVFDMAKWINSGFYTGMVKEAFEKILAVFGIVFEEEVLDAD-- 401 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F++AD IR QL ++G L D K +G R TR Sbjct: 402 --IEALIAKRQEARTNRDFATADAIRDQLAAQGIKLLDTK---DGVRWTR 446 >gi|328958761|ref|YP_004376147.1| cysteine--tRNA ligase [Carnobacterium sp. 17-4] gi|328675085|gb|AEB31131.1| cysteine--tRNA ligase [Carnobacterium sp. 17-4] Length = 468 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 170/492 (34%), Positives = 252/492 (51%), Gaps = 63/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF I+ ++MYVCGPTVY++ HIGNAR + FD + R L Y + Sbjct: 2 LKIYNTLTREKEEFVPIEEGKVKMYVCGPTVYNYIHIGNARSTVAFDTVRRYLEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ ++ + + K + + +DT L TH PR Sbjct: 61 -VAYISNFTDVDDKIIRTAKE------LDLSAQEVADKFIEAYHEDTHALGVEKATHHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 ++P+++ I +I G+AYE ++ + T +YG S IDE ++G V Sbjct: 114 VMENMPEIVDFIAVLINKGYAYEVEGDVYYRTRKFKDYGKLSDISIDELEVGASNRLTVQ 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E WESPWG GRPGWHIECS M++ YLG DIH GG DL Sbjct: 174 ENNKKEDPLDFALWKSAKAEEISWESPWGAGRPGWHIECSVMATKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A+ W+HNGF+ ++ KMSKS GN + +++++ + Sbjct: 234 TFPHHENEIAQS-EAKTGHPFAHYWMHNGFVTMDNEKMSKSIGNVVLVHDII-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--IDPAV------- 351 ++R M T YR PI + + EA LSK +T+ + + AV Sbjct: 286 QVDPQIVRFFMATTQYRRPISYNETTIEEARANLSK-IKTAYDNAMYRLKDAVETETDDQ 344 Query: 352 -------------LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNA 387 + + +D N+ + I ++++A+ + +L F Sbjct: 345 EQLNQFTSFKENFIKEMDDDFNSANGITVVYEMAKAMNIYSERSVVSKVVLEAMLDQFQE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI L + IE+L+++R K F +D IR QL+ +G IL+D Sbjct: 405 LVQIFGIAFAATEL---LDETIEQLIEDRNAARAEKNFQRSDEIRDQLKEEGIILDD--T 459 Query: 448 PDNGQRMTRWKQ 459 P TRW++ Sbjct: 460 PQG----TRWRR 467 >gi|159041398|ref|YP_001540650.1| cysteinyl-tRNA synthetase [Caldivirga maquilingensis IC-167] gi|157920233|gb|ABW01660.1| cysteinyl-tRNA synthetase [Caldivirga maquilingensis IC-167] Length = 500 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 174/475 (36%), Positives = 247/475 (52%), Gaps = 45/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++NT + +F+ + R YVCG T YD AH+G+AR + FD+ R L Y Sbjct: 21 IMVFNTATKMTEQFRLMKAGVARGYVCGLTPYDEAHVGHARVAVFFDLFRRYLEYL--GI 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKIIE AR+E IN + S+ ++++ L P+ Sbjct: 79 NVRLVTNFTDIDDKIIEAARKEFGDDLINHWYEV-PSRYIKKYLDYMDALYVKRAYAYPK 137 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ M+ I ++ G+AY A+ + FD + +PNYG FS ++I+E G RV + Sbjct: 138 VTENVQDMVKWIDELVRRGNAYVADGSVYFDVTKVPNYGEFSGQRINELIAGARVEPEPG 197 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK P EP W+SPWG GRPGWH+EC MSS YLG FD HGGG DL+FPH Sbjct: 198 KRNPLDFALWKAWKPNEPWWDSPWGPGRPGWHLECVVMSSKYLGVPFDFHGGGQDLVFPH 257 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIA + + A WIH G +N+ G KMSKS GN I I+++L + A Sbjct: 258 HENEIAIAKVYYGLRLFARYWIHVGLVNIGGEKMSKSLGNIIPISDVLS-------KYDA 310 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------KWPQTSTSKGIIDPAVL-- 352 +RL L THYR+PIDF+ + E L + ++ KG D AV Sbjct: 311 EAVRLYFLNTHYRKPIDFSFSGIEAMENTLRGIYASFDYLIQLMNEASEKGTSDEAVTND 370 Query: 353 ---------SALYNDLNTVSAIQALHKLAR----------ESTKNHD---LLPIFNASAH 390 +AL +D NT +A+ L L+ E + LL + + + Sbjct: 371 AFKFMVNFENALNDDFNTPAAVSELINLSNYINSRIVYQPEKVSKYSISQLLNVLSYMSQ 430 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 ILG+ + + +N + I L++ R L + K + +AD IR++L G +L DY Sbjct: 431 ILGV-LNRTRINPVLVDLINTLIKVRQSLRERKLYDAADLIREELGKLGIVLGDY 484 >gi|307274057|ref|ZP_07555267.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0855] gi|306509365|gb|EFM78425.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0855] Length = 478 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 175/495 (35%), Positives = 258/495 (52%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + P + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKELKITAPE------VAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A AN W+HNG++ + + KMSKS GNFIT++E+++ Sbjct: 239 DLEFPHHENEIAQS-EAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVD 297 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGI- 346 ++R M T YR PI ++ L EA K + Q + Sbjct: 298 -------PQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 347 -----------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLL----PI 384 ++ ++ + +D N + I +++LA+ ++T + +L + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I + E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFCLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 P TRW++ Sbjct: 468 --TPQG----TRWRR 476 >gi|115352164|ref|YP_774003.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria AMMD] gi|122322791|sp|Q0BDV4|SYC_BURCM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115282152|gb|ABI87669.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria AMMD] Length = 465 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 174/472 (36%), Positives = 250/472 (52%), Gaps = 49/472 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR G Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAI-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDI+DKII RA + + I +T + +D L P + Sbjct: 61 YR-VTYVRNITDIEDKIIRRA------VENGETIKSLTDRFIGAMHEDEAALGIQRPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEKLETNGYAYQAADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPPGATWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL------ 352 + A V+R ++ THYR P++++ L +A L++ T+ ++P L Sbjct: 288 --RYDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTR---LYTALKDVEPDALALDWNE 342 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDL-------------LPIFNASAHIL 392 +A+ +D+NT A+ L +LA E + D + L Sbjct: 343 PHAQRFAAAMNDDINTPVAVATLFELAGEINRTRDASLARQLKQLAGLLGLLGREPRAFL 402 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE + R+ + K ++ AD IR +L G LED Sbjct: 403 QQATGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALED 454 >gi|256848164|ref|ZP_05553608.1| cysteinyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256715224|gb|EEU30201.1| cysteinyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 469 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 257/485 (52%), Gaps = 72/485 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--YYG 62 +KIYNTL R EF + P + MYVCGPTVY++ HIGNAR I FD + R L + Y+ Sbjct: 2 LKIYNTLTRTKEEFHPVHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFIGYH- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+ AR++ ++P + K + F++DTT + T Sbjct: 61 ---VNYVSNFTDVDDKMIKAAREQEITVPE------LADKYIRAFLEDTTAVNIEPATMH 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT++IP++I IQ +I G+AY + ++ + +YG S + ID+ ++G Sbjct: 112 PRATDNIPEIIKFIQRLIQRGYAYAVDGDVYYRARKFKHYGQLSGQSIDDLEVGASEHVS 171 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K +P DF LWK + P E W+SPWG GRPGWHIECS MS+ YL DIH GG Sbjct: 172 ADEVNKKADPMDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTKYLADTIDIHAGGQ 231 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T+++++ Sbjct: 232 DLEFPHHENEIAQSEAATG-KKFVNYWMHNGFVTIGKDNEKMSKSLHNFVTVHDII---- 286 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKG-- 345 + V+R M T YR PI ++ L +A+ L+ ++ + + G Sbjct: 287 ---KHVDPQVLRFFMATTQYRRPIQYSEDNLVDAQNNLAHIQTAFNNLEYRKNDATDGDD 343 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKL-------------ARESTKN-----H 379 + + A+ +D+N + I +++L A+++ N Sbjct: 344 TTVANQLATFRSSFIEAMDDDINVQNGIAVVYELVKFANRYTEKETVAKDAIGNIQKLLK 403 Query: 380 DLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 +LL IF G ++ E I++L+ +R + K F+ +D IR L+++G Sbjct: 404 ELLLIFGVKLTATG-QIDDE--------TIKQLIAKRDEARRQKNFALSDQIRDDLKAQG 454 Query: 440 FILED 444 I+ED Sbjct: 455 IIIED 459 >gi|292670589|ref|ZP_06604015.1| cysteine-tRNA ligase [Selenomonas noxia ATCC 43541] gi|292647755|gb|EFF65727.1| cysteine-tRNA ligase [Selenomonas noxia ATCC 43541] Length = 475 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 172/481 (35%), Positives = 251/481 (52%), Gaps = 58/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGE 63 + +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L R Y Sbjct: 2 LTVYNTMTRKKEEFHPLRTGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRFLSRKGY-- 59 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y++N TD+DDKII A +E + I+ + + K L P Sbjct: 60 -RVRYIQNFTDVDDKIINAANREGVTW------KEISDRYIAAYFKAMDALNVRRADVFP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R + + ++I +I+ +I G AY ++ + + +YG S R +++ + G RV Sbjct: 113 RVSETMAEIIRMIETLIERGFAYVTGAGDVYYRVEAFAHYGRLSGRSLEDMEAGARVEVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG+VFD HGGG DLIF Sbjct: 173 ETKEHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSVKYLGEVFDFHGGGNDLIF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQ+ C D EK A W+HNGF+ ++ KMSKS NF T+ ++L + Sbjct: 233 PHHENEIAQAEPCIDGDEKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KE 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSA 354 +P VIR +L THYR P+DF+ +RL EA+ L + + S+ +G D A A Sbjct: 286 FPGEVIRFFILQTHYRSPLDFSDERLHEAQAALDRLHNVHDVIVEFSSREGTADTAAELA 345 Query: 355 LYNDL-------------NTVSAIQALHKLARESTKNHDLLP---------------IFN 386 + NT AI + LA+E + H + F Sbjct: 346 AQAETFLHDFDAAMDDDFNTALAISQMFGLAKEINRYHQEVERGTSFDAANFKKAADAFY 405 Query: 387 ASAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A I+GI +E + + +A ++ ++ R K ++ AD IR L++ G ++E Sbjct: 406 TMAEIIGI-FEQEEMVADDGLADALMDIIIGIRQEARAAKNWAVADKIRDGLKNAGVVIE 464 Query: 444 D 444 D Sbjct: 465 D 465 >gi|255994717|ref|ZP_05427852.1| cysteine--tRNA ligase [Eubacterium saphenum ATCC 49989] gi|255993430|gb|EEU03519.1| cysteine--tRNA ligase [Eubacterium saphenum ATCC 49989] Length = 462 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 172/473 (36%), Positives = 256/473 (54%), Gaps = 54/473 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ + EF I+ +YVCGPTVY+F H+GNARP++VFD L R L Y G + Sbjct: 1 MKIYNTMTGEKEEFVPINEGEANIYVCGPTVYNFFHLGNARPLVVFDCLRRYLEYI-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII +AR+E I N+ ++ +++ +D L + P+ Sbjct: 60 -VNFVQNFTDVDDKIINKAREE--GITANE----VSINYIKEYFQDAKALNVREASLHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I+ +I G AYE + ++ + T + YG S + IDE + G R+ + Sbjct: 113 VTENMSDIIAFIEKLITKGFAYEVDGDVYYKTRAFSEYGKLSHQNIDELEAGARINIEEK 172 Query: 185 KKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK R P E WESPWG GRPGWHIECSAM+ +LG DIH GG DL FP Sbjct: 173 KHDPLDFALWKARKEPDEIAWESPWGLGRPGWHIECSAMAQKFLGDTIDIHAGGRDLCFP 232 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQS C R A W+HNG++ + K+SKS GNF T+ ELLE +F G + Sbjct: 233 HHENEIAQSEACTGR--PFARYWMHNGYITMNKEKVSKSKGNFFTVRELLE--EFDGET- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVLS 353 +R +L HYR PI+F+ + + +A+ L + + + +G + ++ Sbjct: 288 ----LRFFLLQGHYRNPIEFSKELIYQAKAGLDRIRRAKENLQYIIENGHEGEVSEDCIN 343 Query: 354 AL-----------YNDLNTVSAIQALHKLA-------RESTKNHDLLPI--FNASAHILG 393 L +DLNT AI + ++ ++ K + L + ++ILG Sbjct: 344 QLNKRIDSFKMHMEDDLNTADAITDIFEMVTDINSQLEKNGKEYARLALSKLQEVSNILG 403 Query: 394 IEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + E + +N+ I L ER K K F AD +R ++ G+ ++D Sbjct: 404 FLQGEGTEEIPENVKI----LADERQEARKNKDFKRADELRDEVLKLGYEIKD 452 >gi|116491535|ref|YP_811079.1| cysteinyl-tRNA synthetase [Oenococcus oeni PSU-1] gi|290891135|ref|ZP_06554197.1| hypothetical protein AWRIB429_1587 [Oenococcus oeni AWRIB429] gi|122276283|sp|Q04DQ8|SYC_OENOB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116092260|gb|ABJ57414.1| cysteinyl-tRNA synthetase [Oenococcus oeni PSU-1] gi|290479099|gb|EFD87761.1| hypothetical protein AWRIB429_1587 [Oenococcus oeni AWRIB429] Length = 467 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 176/488 (36%), Positives = 258/488 (52%), Gaps = 59/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT K EF+ I P I MYVCGPTVY++ H+GNAR I FD + R L Y + Sbjct: 2 LKVFNTATLKKEEFKPIVPGKITMYVCGPTVYNYIHVGNARSSIAFDTIRRYLLYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII RA++E S + I SK + F +DT L + T + R Sbjct: 61 -VNFVSNFTDVDDKIINRAQEEGVSE------NAIASKYIKAFYEDTKPLNIIPATTRTR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT IP +I + ++I G+AYE+ + F NYG + +++ ++G R+ + Sbjct: 114 ATEVIPDIIEFVSDLIDKGYAYESQGGVYFRVRKAGNYGLLAHENLEDLEVGASGRLDDG 173 Query: 183 YH--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK W+SPWG+GRPGWHIECS MS+ YLG DIHGGG+DL Sbjct: 174 ALALKEDPLDFALWKNEPRQVIKWDSPWGQGRPGWHIECSVMSTKYLGYTIDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH +E+AQS A ++ + W+HNGF+N+ KMSKS GNF T++ELL Sbjct: 234 AFPHHTDEMAQS-EAHTGKQFVHYWLHNGFVNVNNEKMSKSLGNFTTVHELLS------- 285 Query: 301 SWPAPV-IRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTST 342 S+ P+ IR M THYR PI+++ +RL A+ + PQ Sbjct: 286 SYDDPMAIRFLMTATHYRRPINYSSSELERARVELDRIRTAYRRLKNADFKIGDDPQIDQ 345 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------------ 390 A + A+ +D N +A+ A+ +L R + D + + SA Sbjct: 346 LVSKQTAAFVEAMDDDFNVANALAAIFELVRLANSYVDSGDVKDKSAQEILRQIAELIGV 405 Query: 391 --ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+E KE L K I + ++K R+ K + +D +R ++ S G+ + D Sbjct: 406 FGISGLETKKESLPKKIELLLKKRETARI----NKNWQQSDQLRDEIFSLGYKVSD---S 458 Query: 449 DNGQRMTR 456 NGQ++ + Sbjct: 459 SNGQQVRK 466 >gi|124028047|ref|YP_001013367.1| cysteinyl-tRNA synthetase [Hyperthermus butylicus DSM 5456] gi|123978741|gb|ABM81022.1| Cysteinyl-tRNA synthetase [Hyperthermus butylicus DSM 5456] Length = 490 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 184/483 (38%), Positives = 246/483 (50%), Gaps = 61/483 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++ NT K+ EF+ + P +RMYVCGPTVYD+ H+G+AR + FD + R LR Sbjct: 15 IRVRNTFGGKLEEFKPLRPGLVRMYVCGPTVYDYTHLGHARTYVAFDAIKRYLRLR--GY 72 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+NITDIDDKII RAR+E D I+ + F + R + PR Sbjct: 73 NVYHVQNITDIDDKIINRAREEG-----KDWREIVETYAKDYF--EGLRALRIKIDMHPR 125 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+HI ++I I+ +I G+AY A + + F+ P+YG S R E+ K Sbjct: 126 VTSHIREIIEFIEGLIDKGYAYVAPSGSVYFEVDKYPDYGRLSGRFHPEEWRQEEDVLK- 184 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK P EP WE+PWGRGRPGWHIECS M+S YLG FDIHGGG DLIFP Sbjct: 185 EKKNPYDFALWKAWKPGEPYWEAPWGRGRPGWHIECSVMASRYLGDQFDIHGGGQDLIFP 244 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS + W+H G+L + G KMSKS GN I + E L + W Sbjct: 245 HHENERAQSEAYFGKKPWVRYWLHTGYLTIRGEKMSKSLGNIIPLREAL-------KKWS 297 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------PQT--STSKGI 346 +RL +L HYR +DF+ + L +A+ L + PQ+ S+ Sbjct: 298 PETLRLWILSAHYRTQLDFSEESLEQAKANLRRLRGALQGLQRIIEEVDPQSRLGDSEAK 357 Query: 347 IDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 + VL+ A+ ND NT A+ A KL + T N ++LP N +A IL E Sbjct: 358 LVNTVLTLYKEFHEAMSNDFNTSRALAAALKLVK--TVNAEILPAENYTAAILAYRTLLE 415 Query: 400 -----------------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 K + ++ +V+ R L K + AD IR +L G L Sbjct: 416 FNEVFAVLDDIVYGVAQQAQKLVGKLVDLIVKVRAELRARKMYELADNIRAELGELGIKL 475 Query: 443 EDY 445 DY Sbjct: 476 YDY 478 >gi|260584970|ref|ZP_05852714.1| cysteine--tRNA ligase [Granulicatella elegans ATCC 700633] gi|260157400|gb|EEW92472.1| cysteine--tRNA ligase [Granulicatella elegans ATCC 700633] Length = 470 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 170/494 (34%), Positives = 255/494 (51%), Gaps = 65/494 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ EF+ ++P ++MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IQVYNTLTRQKEEFKPLEPGIVKMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A E P ++ K + F +DT L T P Sbjct: 61 -VNYVSNFTDVDDKII-KAANETGMTP-----EEVSKKYIEAFYEDTAALNVKKATLNPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 N + +I ++ ++ AYE+ ++ F T +YG S + I + ++G T Sbjct: 114 VMNTMDDIIAFVEALVEKEAAYESGGDVYFITEKFKDYGKLSDQSIQDLQVGASQRTESA 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K+NP DF LWK + P E W+SPWG+GRPGWHIECS M++ +LG DIHGGG DL Sbjct: 174 DDAKKRNPLDFALWKSAKPGEISWDSPWGKGRPGWHIECSVMATKHLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKT----ANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 FPHHENEIAQS KT A W+HN F+ + +G KMSKS GNF+ +++++ Sbjct: 234 AFPHHENEIAQSES-----KTGHPFARYWMHNAFVTMGEDGEKMSKSLGNFVLVHDII-- 286 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDPAVLS 353 + ++R + HYR P+ F+ L EA +SK T S ++ ++ AV S Sbjct: 287 -----KEIDPQILRFFLASAHYRRPLKFSESSLQEATANVSKIQTTFSNTRYRLEQAVES 341 Query: 354 --------------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLPIF 385 + +D N + + L++ L RE L + Sbjct: 342 LEDDQDVWASFEALEGKFQEEMDDDFNAANGMTVLYQFVKEWNVYLEREIVSRVILEKLL 401 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + + I KE + + I+ L+ ERL K K F+ +D IR+ L+++G +LED Sbjct: 402 EKAEQLFAIFGMKEVQEELVDDDIQALIDERLEARKAKNFARSDEIRELLKAQGIVLED- 460 Query: 446 KNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 -----TAQGTRWRR 469 >gi|311741770|ref|ZP_07715581.1| cysteine--tRNA ligase [Aeromicrobium marinum DSM 15272] gi|311314776|gb|EFQ84682.1| cysteine--tRNA ligase [Aeromicrobium marinum DSM 15272] Length = 468 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 245/473 (51%), Gaps = 50/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +Y+T R+ F + P + +Y CG TV HIG+ R +VFDVL R L E Sbjct: 2 SLHLYDTATRRTAAFVPVTPGQVSIYHCGLTVQGPPHIGHIRKEVVFDVLRRWLERSGLE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT V N+TDIDDKII + R++ + N + L C PT++P Sbjct: 62 --VTIVANVTDIDDKIIAKGREQ------GRPWFAVAYANERALHAAYEVLGCQPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT H+P+M+ +I +I GHAY A ++ + FD S P YG+ SR+ +D+ + P Sbjct: 114 RATGHVPEMVEMIATLIERGHAYPATDDSGDVYFDVRSWPEYGALSRQSVDDMQPAEDAP 173 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K++ DF LWK +P W +PWGRGRPGWH+ECSAM+ YLG FDIHGGG Sbjct: 174 PA-GKRDARDFALWKGHKAGDPDSASWTTPWGRGRPGWHLECSAMAGKYLGHEFDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDL FPHHENE+AQS A ++ A IW+HN LNL G KM+KS GN + ++E++ Sbjct: 233 LDLRFPHHENELAQSRAAG--QRFARIWMHNAMLNLGGSKMAKSVGNTLMVSEVV----- 285 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------DPA 350 R P +R +L HYR I+F+ + L EA + T + DP Sbjct: 286 --RRVPPIALRYYLLAAHYRSVIEFSEESLAEAATAFERIAGFVTRAAELVGPGEPGDPT 343 Query: 351 V--LSALYNDLNTVSAIQALHK---------LARESTKNHDLLPIFNASAHILGIE---- 395 ++A+ +DL+ +A+ ALH A S + ++L A +LG++ Sbjct: 344 AEFVAAMDDDLSVPAALAALHATIGDGQRLLAAGSSPELREVLASVRAMLDVLGVDPLSP 403 Query: 396 ----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ + + L+++R + F +AD +R QL + G +ED Sbjct: 404 VWSGATDDSTDQALDTLVGALLEQRTEARAAQDFQTADRVRDQLTAAGVEIED 456 >gi|320530264|ref|ZP_08031333.1| cysteinyl-tRNA synthetase [Selenomonas artemidis F0399] gi|320137479|gb|EFW29392.1| cysteinyl-tRNA synthetase [Selenomonas artemidis F0399] Length = 475 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 175/498 (35%), Positives = 253/498 (50%), Gaps = 68/498 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGE 63 + +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L R Y Sbjct: 2 LTVYNTMTRKKEEFHPLKEGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRYLARKGYR- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y++N TD+DDKII A +E + I+ + + L P Sbjct: 61 --VRYIQNFTDVDDKIINAANREGVTW------KEISDRYIAAYFTAMDALNVHRADVFP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R + + +I ++ +I G+AY + ++ + +YG S R +D+ + G R+ Sbjct: 113 RVSETMEDIIRMVGTLIARGYAYATSEGDVYYSVEKFAHYGRLSGRSLDDMEAGARIEIN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG+ FD HGGG DLIF Sbjct: 173 ETKRHPMDFALWKAAKPGEPAWESPWGKGRPGWHIECSAMSVKYLGEAFDFHGGGSDLIF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQ+ C D EK A W+HNGF+ ++ KMSKS NF T+ ++L + Sbjct: 233 PHHENEIAQAEPCIDGHEKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KE 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPAVLSA 354 +P VIR +L THYR P+DF+ +RL+EA+ L++ T S +G D A + A Sbjct: 286 FPGEVIRFFILQTHYRSPLDFSDERLSEAQAALARLSHTKEVIDELSGCEGTADTAAVLA 345 Query: 355 L-------------YNDLNTVSAIQALHKLARESTKNHDLLP---------------IFN 386 + +D NT A+ + L++E + L + Sbjct: 346 VQAKEFLAAFDAAMDDDFNTALALSQMFGLSKEINRYRQELERGAAFDAAHFAEAASAYR 405 Query: 387 ASAHILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 A I+GI + L + I L Q+ + K ++ AD IR +L+ G + Sbjct: 406 TMAEIIGIFEQETAAASDGLADGLMDIIIGLRQDARV---QKNWALADRIRNELKEHGVV 462 Query: 442 LEDYKNPDNGQRMTRWKQ 459 LED P RWK+ Sbjct: 463 LED--TPTG----VRWKR 474 >gi|88608185|ref|YP_506222.1| cysteinyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama] gi|109894911|sp|Q2GE74|SYC_NEOSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|88600354|gb|ABD45822.1| cysteinyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama] Length = 507 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 151/344 (43%), Positives = 203/344 (59%), Gaps = 16/344 (4%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K++++NTL EF + +RMYVCGPTVYD HIGN R +V+D++YR+L + E Sbjct: 2 KLRVHNTLSGLKEEFFPLSSEVVRMYVCGPTVYDVPHIGNIRASVVYDIVYRVLLKLFPE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKII A D +++ F + L CL+PT +P Sbjct: 62 --VIYVRNITDVDDKIITAASVRGVKC---DKVAL---HYEHIFHEHLGLLNCLSPTVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI +IQ +I +G+AY + FD S YG S+RK ++ G RV + Sbjct: 114 KATQNIGKMISMIQALIDNGNAYSVGGNVYFDVGSFAEYGVLSKRKKEQLVYGVRVEKDV 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DFILWK + W SPWG GRPGWHIECSAM+ LG FDIHGGG DL FP Sbjct: 174 DKKHPGDFILWKSDDHVY--WPSPWGNGRPGWHIECSAMTLATLGADFDIHGGGADLKFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS CA+ + A W+HNGFL + G KMSKS GN + ++ L+E+ Sbjct: 232 HHENERAQSMCANPGSQFARYWVHNGFLTVNGEKMSKSLGNVVNVDTLVES------GVT 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 VIR ++ THY +P+D+ + EA L K+ G++ Sbjct: 286 PNVIRFVLISTHYSKPLDWNDAMVGEAINSLIKFKLALLDSGVL 329 >gi|91070080|gb|ABE11005.1| cysteinyl-tRNA synthetase [uncultured Prochlorococcus marinus clone ASNC612] Length = 489 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 188/512 (36%), Positives = 260/512 (50%), Gaps = 86/512 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL +++ F+ ID +++Y CG TVYD H+G+AR I +DVL R L Y + Sbjct: 2 IKLFNTLSKRVEVFKPIDDV-VKIYCCGVTVYDLCHLGHARSYIAWDVLRRFL--IYSDF 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E S+ ++ KN +F KD L + P PR Sbjct: 59 KVKYVQNFTDIDDKILKRAKEESSSMKE------VSEKNIIEFHKDMDSLGIMRPDSMPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 ATNHI + I + G+AY + ++ + NYG S + I EQ + + Sbjct: 113 ATNHICNICSFITILEDKGYAYSRDGDVYYSVFKNKNYGKLSNQNIQEQNINQQGRMANN 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG DIH GG DL Sbjct: 173 ENSKKLNPQDFALWKKAKDDEPFFDSPWGKGRPGWHIECSAMVKDELGDTIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI EL+ + Sbjct: 233 IFPHHENEIAQSEAANG-KKLANYWLHNGMVNVNGQKMSKSLKNFKTIRELI-------K 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------- 350 S +P+ +R ++ +YR+P+DFT + L A W + + +D Sbjct: 285 SGISPMTLRYFVMTVNYRKPLDFTEEALRSAS---EAWKNINVALSFMDLTKGAFRFINK 341 Query: 351 ----------------------VLSALYNDLNTVSAIQALHKLAR--------------- 373 AL NDLNT AI ++ LA+ Sbjct: 342 NESIEEEYKEKISFELSQKKLKFSEALGNDLNTAGAIAIIYDLAKPLKNFLNQFQRVEGF 401 Query: 374 --ESTKNHDLLPIFNA---SAHILGIEVCKEHLNKNISIAIEK---LVQERLILLKMKKF 425 + + LL F +LG++ KE L K I E+ L+ ERL K K + Sbjct: 402 KIDLNEKFFLLENFKTLEKLTEVLGLK--KEVLVKESKITEEEISMLINERLKAKKEKNY 459 Query: 426 SSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + AD IR LE KG L D + +T W Sbjct: 460 TKADEIRNLLEEKGIEL-----IDQSKAITTW 486 >gi|71904305|ref|YP_281108.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] gi|109894951|sp|Q48RA7|SYC_STRPM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71803400|gb|AAX72753.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] Length = 447 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 249/462 (53%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F+ AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFAIADAIRDQLAAQGIKLLDTKD 440 >gi|238855655|ref|ZP_04645955.1| cysteine--tRNA ligase [Lactobacillus jensenii 269-3] gi|260664903|ref|ZP_05865754.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|282933604|ref|ZP_06338973.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] gi|238831721|gb|EEQ24058.1| cysteine--tRNA ligase [Lactobacillus jensenii 269-3] gi|260561386|gb|EEX27359.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|281302259|gb|EFA94492.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] Length = 473 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 180/479 (37%), Positives = 253/479 (52%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 1 MKIYNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + + F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEGITVPE------LAKRYINAFMEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT I +I I+ +I G AYE + ++ + YG S + I + G Sbjct: 113 ATEEIKDIIAFIKTLIEKGFAYEVDGDVYYRAKKFTGYGKLSDQDIASLEEGASQHVNEA 172 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF LWK+ E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EFAKKEDPIDFALWKKQKQSDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + +KMSKS NF+T++++L+ Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKDEQKMSKSLHNFVTVHDILK---- 287 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGII 347 R P V+R M YR+PI+++ + L +A I+L K T + S+ Sbjct: 288 --RVDPQ-VLRFFMASVQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLKETNSQENQ 344 Query: 348 DPAVL---------SALYNDLNTVSAIQALHKLARESTKN-----HDLLPIFNASAH--- 390 D + A+ +D N +A+ ++ L KN DL + H Sbjct: 345 DLTIAIEDSENRFKEAMDDDFNVQNALSVVYDLLPVINKNISEDTSDLSALRKFLQHLEK 404 Query: 391 ---ILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+++ K K + IE+LV++R K K F+++D IR QL IL+D Sbjct: 405 WLAIFGVDIDKLTTEKVSDDDAEIEELVKKRDEARKNKDFATSDTIRDQLAEMNIILQD 463 >gi|294791947|ref|ZP_06757095.1| cysteine--tRNA ligase [Veillonella sp. 6_1_27] gi|294457177|gb|EFG25539.1| cysteine--tRNA ligase [Veillonella sp. 6_1_27] Length = 482 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 175/500 (35%), Positives = 246/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ G Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHV-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTYV+N TD+DDKII + E S I ++ + + L Sbjct: 61 YK-VTYVQNFTDVDDKIINTSNGEGVSW------DTIANRYIDSYFEVMDVLGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +IQ +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIDDIIAMIQTLIDKGYAYELDGDVYYSVEKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKHGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPAVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA---- 350 +R +L THYR P+DF+ +RL EA L + G D A Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGSCDEAQRLL 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLP----------------IF 385 A+ +D NT A ++ LA+E + + IF Sbjct: 347 EKAKAYEEEFEDAMSDDFNTALATSSMFGLAKEINIYYQAVTSREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILGI-EVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G+ E E + E+L+Q R + K+++ AD IR +L G Sbjct: 407 KFMTDVIGVLEKAWEGNTGANAAEYEELMQVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED +P RWK++ Sbjct: 467 TIED--SPQGA----RWKKR 480 >gi|77413794|ref|ZP_00789974.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 515] gi|77160156|gb|EAO71287.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 515] Length = 447 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 170/473 (35%), Positives = 257/473 (54%), Gaps = 49/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + + K F++D L T Sbjct: 57 CGYQVNYISNFTDVDDKIIKGAAEAGMDTKS------FSDKFISAFMEDVAALGVKPATK 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 PR +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G RV Sbjct: 111 NPRVIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRV 170 Query: 180 P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DGEGEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT++++L+ Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFITVHDMLKIV-- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------- 348 VIR + YR+P++FT + + +AE+ L K+ + + + I + Sbjct: 287 -----DGQVIRFFLATQQYRKPVNFTEKAVHDAEVNL-KYLKNTFNLPIQENANDEELEQ 340 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL---GIEVCKEHLNK 403 A A+ +D NT + I + ++A+ H + A +L GI +E L+ Sbjct: 341 FVKAFQEAMDDDFNTANGITVIFEMAKWINSGHYTSKVKETLAELLEIFGIVFQEEVLDA 400 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + IE L+++R + F++AD IR +L +G L D K +G R TR Sbjct: 401 D----IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTK---DGVRWTR 446 >gi|256852089|ref|ZP_05557476.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260661341|ref|ZP_05862254.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|282934881|ref|ZP_06340113.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] gi|297205036|ref|ZP_06922432.1| cysteine--tRNA ligase [Lactobacillus jensenii JV-V16] gi|256615501|gb|EEU20691.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260547796|gb|EEX23773.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|281301062|gb|EFA93374.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] gi|297149614|gb|EFH29911.1| cysteine--tRNA ligase [Lactobacillus jensenii JV-V16] Length = 473 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 181/490 (36%), Positives = 256/490 (52%), Gaps = 77/490 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 1 MKIYNTLTRQKEEFKPLVPGKVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + + F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEGITVPE------LAKRYINAFMEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT I +I I+++I G AYE + ++ + YG S + I + G Sbjct: 113 ATEEIKDIIAFIKDLIEKGFAYEVDGDVYYRAKKFNGYGKLSDQDIASLEEGASEHVNEA 172 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF LWK+ E WESPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EFAKKEDPIDFALWKKQKQSDEIAWESPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L+ Sbjct: 233 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKDEEKMSKSLHNFVTVHDILK---- 287 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------STSKG 345 R P V+R M YR+PI+++ + L +A I+L K T S Sbjct: 288 --RVDP-QVLRFFMASVQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLQDTDSQENK 344 Query: 346 IIDPAV-------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH-------- 390 + A+ A+ +D N +A+ + +DLLPI N + Sbjct: 345 ALAVAIEDSENRFKEAMDDDFNVQNALSVV----------YDLLPIINKNISESTSDLSN 394 Query: 391 -------------ILGIEVCK---EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 I G+++ K E ++ + S IE+LV++R K K F+++D IR Q Sbjct: 395 LKQFLQHLENWMAIFGVDIHKLTAEKVSDDDS-EIEELVKKRDEARKHKDFATSDAIRDQ 453 Query: 435 LESKGFILED 444 L + +L+D Sbjct: 454 LAAMNIVLQD 463 >gi|166365576|ref|YP_001657849.1| cysteinyl-tRNA synthetase [Microcystis aeruginosa NIES-843] gi|189082070|sp|B0JJL5|SYC_MICAN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166087949|dbj|BAG02657.1| cysteinyl-tRNA synthetase [Microcystis aeruginosa NIES-843] Length = 480 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 175/486 (36%), Positives = 259/486 (53%), Gaps = 71/486 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ F + P + MY CG TVYD+ H+G+AR +V+DV+ R L Y G K V Sbjct: 5 LYNTLSRREEPFTPLIPGIVSMYCCGITVYDYCHLGHARTCVVWDVVRRYLEYL-GYK-V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y++N TDIDDKI+ RA+ EH ++ + + + + + +D +L PRAT Sbjct: 63 RYIQNFTDIDDKILNRAKNEHTTM------AAVAERFIEAYFEDMAKLGVRPADAYPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG------TRVP 180 + + + L+ + G+AY ++ ++ + +YG S RK+D+ + G T P Sbjct: 117 HTLDGIKRLVYELEQKGYAYPSDGDVYYSVRRFSDYGKLSGRKLDDLQAGASGRVETDDP 176 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + EP W+SPWG+GRPGWHIECSAM LG+ DIH GG DL Sbjct: 177 EAIKKQDPFDFALWKGAKSGEPSWDSPWGQGRPGWHIECSAMVKEQLGETIDIHVGGSDL 236 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + A+ W+HNG + + G KMSKS GNFITI ELL Sbjct: 237 IFPHHENEIAQSEAATG-KPLAHYWLHNGMVKVAGEKMSKSLGNFITIRELLA------- 288 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--QTSTSKGI-----IDPAVLS 353 + +RL +L YR+PIDF+ + L A + W Q S G +PA+ Sbjct: 289 KYDPLAVRLLILGAQYRKPIDFSDEGLQAA---TNGWHTLQEGLSFGYKHLPPDNPAITD 345 Query: 354 ---------ALYNDLNTVSAIQALHKLARE---------------------STKNHDLLP 383 A+ +D N + L ++A+E + K H L+ Sbjct: 346 QELENRFQEAVNHDFNFAGGLAVLFEIAKELRKEGNNLTHAGKTDSNLAQLAVKWHTLVK 405 Query: 384 IFNASAHILGIEVCKEH----LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESK 438 + + +LG+E+ + +++ IS A IE L+Q+R K K ++ +D IR +L+++ Sbjct: 406 L----SRVLGLEMAADQGETPVSEGISAADIENLIQQRTEAKKAKNYAESDRIRAELKAQ 461 Query: 439 GFILED 444 G L D Sbjct: 462 GITLID 467 >gi|219848629|ref|YP_002463062.1| cysteinyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] gi|219542888|gb|ACL24626.1| cysteinyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] Length = 472 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 182/491 (37%), Positives = 253/491 (51%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R++ + I+P +RMYVCG T YD AHIG+A IVFD++ R L + + Sbjct: 3 IHLYNTLTRRLEPLETIEPGVVRMYVCGVTPYDEAHIGHAMSAIVFDMIRRYLEFRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TDIDDK+I RA Q P+ ++ + +F+ + L T PR Sbjct: 62 -VRHIVNFTDIDDKVIARA-QAMGQDPLA-----LSGQYAAEFLTQLQAMNVLPATAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + +P +I +Q +I G+AY + ++ F +YG S R +DE GTR Sbjct: 115 VSTTMPGIIAFVQGLIERGYAYVVDGDVYFRVKRDEDYGKLSGRSLDEMLSGTRFEVDPR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF LWK + P EP W+SPWG GRPGWHIECSAM+ YLG DIHGGG DLIFPH Sbjct: 175 KESPADFALWKAARPGEPAWDSPWGPGRPGWHIECSAMAMEYLGPQIDIHGGGTDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNL------EGRKMSKSNGNFITINELLETKKFG 298 HENEIAQS + A W+HNG L L + KMSKS GN +TI + L Sbjct: 235 HENEIAQSESLTG-QPFARYWVHNGMLQLVNPQTRQVEKMSKSLGNVVTIADFLS----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDF----TVQRLTEAEILLSKW-PQTSTSKGIIDPAV-- 351 + V RL +L + YR P+ + + E LLS P T + + PAV Sbjct: 289 --RYDPDVFRLIVLSSSYRSPLTYNDEIAADNQRKLERLLSALAPATGSVRE--GPAVAA 344 Query: 352 ------------LSALYNDLNTVSAIQALHKL------ARESTKNHDLLPIFNAS----A 389 ++A+ ND N+ +A+ AL L AR++ + L I + A Sbjct: 345 LREAATIARERFITAMDNDFNSPAALAALFDLVRAINAARDAGLAAEELAIGQQTLRELA 404 Query: 390 HILGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG+ + + IE L++ R L K K+++ AD +R +L G LED Sbjct: 405 GVLGLRLQPRQRTPTAEVTPFIELLIEVRGELRKAKQYALADLVRNRLADLGVALED--- 461 Query: 448 PDNGQRMTRWK 458 G TRWK Sbjct: 462 ---GPHGTRWK 469 >gi|33519768|ref|NP_878600.1| cysteinyl-tRNA synthetase [Candidatus Blochmannia floridanus] gi|61216292|sp|Q7VRB4|SYC_BLOFL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33504113|emb|CAD83375.1| cysteinyl-tRNA synthetase [Candidatus Blochmannia floridanus] Length = 474 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 177/479 (36%), Positives = 254/479 (53%), Gaps = 56/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL +K F++I I++YVCG TVYD H+G+AR ++FD + R L++Y + Sbjct: 2 LKIFNTLTKKKEIFKSIKCGEIKIYVCGITVYDLCHLGHARTFVIFDTILRYLKHYGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA I N+ + S+ Q+ D L L P ++P+ Sbjct: 61 -VKYVRNITDIDDKIIQRA------IKNNETTDHLASRMIQEMYLDLDILNILRPNYEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+HI +I I+ +I HAY ++ ++F ++ NYG S K ++ + K Sbjct: 114 VTDHIELIINFIRLLIERNHAYVTSDGNVMFSIQTVYNYGVLSCHKKNQTFTQRNIRNKM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG+GRPGWHIECSA+S +LGK DIHGGG DL+FP Sbjct: 174 IKKDPVDFVLWKTAKSGEPYWISPWGKGRPGWHIECSAISHAFLGKHIDIHGGGSDLVFP 233 Query: 244 HHENEIAQSCCADRI--EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 HHENEIAQS CA I + N WIH G L KMSKS NF TI E+++ Sbjct: 234 HHENEIAQSTCAHHITVDSYVNTWIHTGMLTFNDEKMSKSLNNFFTIREIIQ-------K 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-IDPAVL-------- 352 + IR +L HYR+P+ ++ + A + L S GI +P V Sbjct: 287 YDPETIRYFLLSAHYRKPLRYSDNNIKNARLSLKHL--YSALHGINFNPIVQLYDNNSEK 344 Query: 353 -------SALYNDLNTVSAIQALHKLA--------RESTKNHDLLPIFNASAHILGI--- 394 + + ND N A L ++A ++ + L A+ILGI Sbjct: 345 YFISKFNNKMNNDFNFPEAYSILFEMAHALNIAKIKDHVRAKSLAAHLKYLANILGILYQ 404 Query: 395 --------EVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 C ++ +++++ I +L+ R K K++ +D IRK+L G ILED Sbjct: 405 DPEIYLGYNTCIKNNKQSLTVEKIRELIYMRENARKNKEWQLSDKIRKRLTEIGIILED 463 >gi|94991232|ref|YP_599332.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] gi|94544740|gb|ABF34788.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] Length = 447 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 167/462 (36%), Positives = 249/462 (53%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AY A+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYAADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL ++G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADVIRDQLAAQGIKLLDTKD 440 >gi|33861697|ref|NP_893258.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|61216283|sp|Q7V0W1|SYC_PROMP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33640065|emb|CAE19600.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 492 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 185/499 (37%), Positives = 265/499 (53%), Gaps = 78/499 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NTL + I F+ ID +++Y CG TVYD H+G+AR I +D+L R L Y + Sbjct: 2 IKLFNTLSKNIEVFKPIDEV-VKIYCCGVTVYDLCHLGHARSYIAWDILRRFL--IYSDY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA++E N +++ ++ KN +F KD L + P P+ Sbjct: 59 KVKYVQNFTDIDDKILKRAKEE------NSSMNEVSEKNITEFHKDMDALGIMRPDSMPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 ATNHI + I+ + G AY ++ + NYG S + I EQ + + Sbjct: 113 ATNHICNICSFIKVLEDKGFAYIRGGDVYYSVFKNKNYGKLSNQNILEQNINQQGRITTD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K+NP DF LWK++ EP ++SPWG+GRPGWHIECSAM LG+ DIH GG DL Sbjct: 173 ESNKKENPQDFALWKKAKDNEPSFDSPWGKGRPGWHIECSAMVKDELGETIDIHLGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ +K AN W+HNG +N+ G+KMSKS NF TI +LL+ Sbjct: 233 IFPHHENEIAQSESANN-KKLANYWLHNGMVNVNGQKMSKSLKNFTTIRDLLD------- 284 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQT------------ 340 S +P+ +R +L +YR+P+DFT + L A + LS + T Sbjct: 285 SGTSPMTLRYFVLTVNYRKPLDFTDEALKSASEAWKNINVALSLFDITKKENLSIEVNET 344 Query: 341 -----STSKGIIDPAV-------LSALYNDLNTVSAIQALHKLAR---------ESTKNH 379 T K +I+ + +AL NDLNT AI +++LA+ + KN Sbjct: 345 NEFVEETYKDMINYEISQKKIKFTNALNNDLNTAGAIAIIYELAKPLKNFINQFQRIKNL 404 Query: 380 DL-----------LPIFNASAHILGIEVCKEHL---NKNISIAIEKLVQERLILLKMKKF 425 ++ +LG++ KE + N+ I L+ +RL K K + Sbjct: 405 EINTNEKFHLRETFKTLEELTDVLGLK--KEEIIIDNRINEDQILSLINKRLGAKKEKDY 462 Query: 426 SSADYIRKQLESKGFILED 444 + AD IR L+ KG L D Sbjct: 463 AEADKIRNLLKEKGVELID 481 >gi|282163962|ref|YP_003356347.1| cysteinyl-tRNA synthetase [Methanocella paludicola SANAE] gi|282156276|dbj|BAI61364.1| cysteinyl-tRNA synthetase [Methanocella paludicola SANAE] Length = 471 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 171/476 (35%), Positives = 257/476 (53%), Gaps = 49/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL K+ +F + ++MYVCGPTVYD+ H+G+AR +VFD + R L+Y G K Sbjct: 3 LRFYNTLASKVEDFVPLHDMEVKMYVCGPTVYDYCHMGHARAYVVFDTIRRYLQYK-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKI++RA +++ +P + + K + +D RL L + PR Sbjct: 62 -VTYVQNFTDVDDKILKRAAEQN--VPPKE----LAEKFINAYFEDMDRLNILRADYYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKY 183 + ++P +I +I+ ++ G+AY ++ + F S+ G+ S + D K+G RV Sbjct: 115 VSQNLPAIIDMIKALVDKGYAYVSDGSVYFSVDSMSEKVGALSHQSYDALKVGARVEVDE 174 Query: 184 HKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK S P E WESPWG GRPGWHIECSAMS LG DIHGGGLDL+F Sbjct: 175 RKRNPMDFALWKASKPGEIISWESPWGPGRPGWHIECSAMSMTTLGPNIDIHGGGLDLVF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EI Q+ A WIHNGFL + KMSKS GNF + ++L KKF Sbjct: 235 PHHESEIMQTEAYTGKPPFAKYWIHNGFLLVNKEKMSKSLGNFFLVRDVL--KKFS---- 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGIIDPAVLSA------ 354 +R +L THY+ P+DF Q L +A L + + I P +A Sbjct: 289 -PDTVRFFILNTHYQSPLDFNDQALEDASRGLERIKNAISGIEARIRSPLAGAASIPGVP 347 Query: 355 -------------LYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASAH 390 + ++L+T A+ + +L R+ + + ++L ++ + Sbjct: 348 ERLSESKKRFEERMDDNLDTREALAEIFELTRDVNRWLAEGDMPADQWKEVLDLYGIYSD 407 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LGI+ + S ++ +V R + K K + ++D IRK+L+ G +ED K Sbjct: 408 VLGIKWTGSMEDLFASELLQLIVDIRDAVRKKKDYETSDLIRKRLKELGITIEDSK 463 >gi|154151531|ref|YP_001405149.1| cysteinyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8] gi|154000083|gb|ABS56506.1| cysteinyl-tRNA synthetase [Methanoregula boonei 6A8] Length = 419 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 168/444 (37%), Positives = 242/444 (54%), Gaps = 32/444 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+TL R + + P + ++VCGPTVYD++H+G+AR +VFDVL + LR+ K Sbjct: 1 MKLYSTLSRTVEPLVTLHPDRVALFVCGPTVYDYSHLGHARTYVVFDVLAKYLRW--NGK 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITD+DDKII RA++E S S + K ++++D L A ++ R Sbjct: 59 EVFYLQNITDVDDKIINRAKEEGVSQ------SELARKFETEYLRDMKSLGIDAVSYYAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I ++ ++ G AY + + F+ + G S ++ ++K +RV + Sbjct: 113 ATTHIPEIIDQVRRLVDKGVAYVTDTGVYFNLDTFDRNGELSGQERAKRK--SRVSDS-S 169 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K N DF LWK E W+SPWGRGRPGWHIE +A+S Y G+ +D+HGGGLDLIFPH Sbjct: 170 KHNALDFALWKLGEFGEYTWDSPWGRGRPGWHIEDTAISEKYFGQQYDMHGGGLDLIFPH 229 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE EIAQ + W+H GFL ++G KMSKS GNFITI + L+T W Sbjct: 230 HEAEIAQMESLEGKHPMVRYWLHTGFLTVKGEKMSKSLGNFITIRDALKT-------WNK 282 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----AVLSALYNDLN 360 V+R ++L++HYR P+ T + A L +T D A A+ DLN Sbjct: 283 DVLRYSILLSHYRSPLQATDEGFANAAKGLEHIRAIATKDKGADAEGRKAFTDAMETDLN 342 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 T AI A+ +LA N D L ILGI +E S + L R L Sbjct: 343 TPMAIAAIQRLA----GNGD-LEALREYGEILGINFLRES-----SAPLSVLEDIRAELR 392 Query: 421 KMKKFSSADYIRKQLESKGFILED 444 K+F +D IR ++ + G + D Sbjct: 393 AKKQFEVSDLIRDRMAAAGIHITD 416 >gi|94987050|ref|YP_594983.1| cysteinyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00] gi|123082155|sp|Q1MQR5|SYC_LAWIP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|94731299|emb|CAJ54662.1| Cysteinyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00] Length = 485 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/326 (45%), Positives = 197/326 (60%), Gaps = 17/326 (5%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNT+E+K I + +YVCG T YDF+HIG+AR IVFD+L RLLRY + V Sbjct: 3 LYNTMEKKKEPLIPIISGKLGIYVCGITAYDFSHIGHARSAIVFDILVRLLRYQGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T++RN TDIDDKII RA +E S + + F +D RL L +P+AT Sbjct: 61 TFIRNFTDIDDKIINRANKEGRSS------KEVAEEFINAFHEDMDRLGVLNADIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++IP+MI Q ++ AY A+ ++ F S P+YG S R DE ++G R+ K Sbjct: 115 DYIPEMIECCQKLLEADKAYITASGDVYFRVRSFPDYGKLSGRTPDELRIGVRIVPSEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + P EP WESPWGRGRPGWHIECSAMS DIHGGG+DLIFPHH Sbjct: 175 EDPLDFVLWKAAKPGEPSWESPWGRGRPGWHIECSAMSEKCWPLPLDIHGGGIDLIFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQ+ + A IW+HNG + + KMSKS GNF + ++LE ++ Sbjct: 235 ENEIAQTESIVN-KPLAKIWMHNGLVQVNSEKMSKSLGNFKIVRDILE-------AYLPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAE 331 +R +L HYR PIDF+ + + E E Sbjct: 287 TLRFFLLKKHYRSPIDFSFEGMNETE 312 >gi|121611834|ref|YP_999641.1| cysteinyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2] gi|187631646|sp|A1WSL6|SYC_VEREI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|121556474|gb|ABM60623.1| cysteinyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2] Length = 460 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 162/393 (41%), Positives = 221/393 (56%), Gaps = 37/393 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R + EF ++P ++RMYVCG T+YD HIG+AR M+ FDV+ R L+ G K Sbjct: 3 LRIYNTLSRALEEFSPLEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKAR-GLK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T + D L PT +PR Sbjct: 62 -VTYVRNITDIDDKIIGRALERGITI------GALTDEMIAAMHADIGALGLEPPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ LI + G AY A+N ++ + YG S + DE + G RV Sbjct: 115 ATQYVPRMLALIGQLQAKGLAYRASNGDVNYAVRKFQGYGKLSGKSPDELRAGARVALAD 174 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + P EP W+S +GRGRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 175 GKTDPLDFVLWKSAKPHEPPEAQWDSDYGRGRPGWHIECSAMSCATLGESFDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS + A W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 235 QFPHHENEIAQSEGVTG-KPLARFWLHNGFVRVDNEKMSKSLGNFFTIRDVLA------- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + A +R ++ HYR ++++ L +A L + T+ ++ PA + Sbjct: 287 QYDAQTVRFFIVRAHYRSALNYSDAHLDDARQALKR---LYTALSLVPPAPVAAIDWTEP 343 Query: 353 ------SALYNDLNTVSAIQALHKLARESTKNH 379 +A+ D T A+ L LA E K+H Sbjct: 344 HAARFQAAMDEDFGTPEAVAVLFDLAVEVNKSH 376 >gi|296242820|ref|YP_003650307.1| cysteinyl-tRNA synthetase [Thermosphaera aggregans DSM 11486] gi|296095404|gb|ADG91355.1| cysteinyl-tRNA synthetase [Thermosphaera aggregans DSM 11486] Length = 481 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 187/484 (38%), Positives = 266/484 (54%), Gaps = 60/484 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--R 58 M ++KIYNTL + + + Q ++P ++MYVCGPTVYD H+G+ R +++DV R L R Sbjct: 1 MLPELKIYNTLTKTVEKIQPVEPGLLKMYVCGPTVYDSTHVGHGRAYVMYDVFKRYLNSR 60 Query: 59 YYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 Y+ V +V NITDIDDKII RAR E+ D + I+ + T+++++ L + Sbjct: 61 GYH----VIHVMNITDIDDKIINRARDEN-----RDWMEIVETY-TKEYLEALNSL-NVQ 109 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 H PR T HI ++I IQ +I GHAY + + FD ++ +YG S R + E + Sbjct: 110 IDHHPRVTQHISEIIEFIQRLIEKGHAYVTPSGSVYFDVNTYEDYGRLSGRLVKEA--WS 167 Query: 178 RVPEKY-HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 + P+ KKNP DF LWK + P EP WESPWGRGRPGWHIECS MS+ YLG+ FDIHGG Sbjct: 168 QEPDFLSEKKNPYDFALWKAAKPGEPFWESPWGRGRPGWHIECSVMSTRYLGERFDIHGG 227 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENE AQS A +IW+H G + + KMSKS N + I E++ KK Sbjct: 228 GTDLIFPHHENERAQSESALGSRPWVSIWMHVGMVMVGADKMSKSLKNIVPIKEVV--KK 285 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK-W-----PQT 340 +GGR+ +R LM+HYR+P+ F+ ++RL + LL K W P Sbjct: 286 WGGRT-----LRYWYLMSHYRKPVSFSEESLEIASEHLRRLNQVSSLLQKLWREAVEPHR 340 Query: 341 STSKGI-IDPAVLSALYN-------DLNTVSAIQALHKLARESTKNHDLLP---IFNASA 389 ++ + + I +L A Y+ D NT A+ +L++ ++ P + N + Sbjct: 341 ASDEDLKILRNLLKAHYSFHVALSEDFNTPEAVASLNEFTTIVFRDIQYNPKYILVNTAV 400 Query: 390 HILG--------IEVCKEHL-NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 IL +E E L +++ I+ LV R L K + AD IR +L G Sbjct: 401 RILRDFDNVFGVLETAPEVLVEEDVDPYIKILVDVRKELRNRKMYDLADMIRSELGKLGV 460 Query: 441 ILED 444 L D Sbjct: 461 TLSD 464 >gi|300174046|ref|YP_003773212.1| cysteinyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811] gi|299888425|emb|CBL92393.1| Cysteinyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811] Length = 469 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 186/497 (37%), Positives = 261/497 (52%), Gaps = 72/497 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL R+ F++I P I MYVCGPTVY++ HIGNAR I FDV+ R Y + Sbjct: 2 IKVYNTLTREKEIFKSIIPGKINMYVCGPTVYNYIHIGNARSSIAFDVVRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RAR+E D ++I +K F++DT L T + R Sbjct: 61 -VNYVSNFTDVDDKIIQRAREEGV-----DEMTI-ANKYANAFIEDTLPLNIQPATVRAR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRV--P 180 AT IP +I +Q++I G+AYEA ++ F YG + + ++E + R+ Sbjct: 114 ATEVIPDIIVFVQDLINKGYAYEAKGDVYFRAKKFKGYGILAHQDLNEMAENAAGRLNDE 173 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF +WK + E WESPWG GRPGWHIECS M+ YL DIHGGG+D Sbjct: 174 EMTRKEDPIDFAVWKATQAEDEISWESPWGSGRPGWHIECSVMAQKYLSNTIDIHGGGID 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NE+AQS A +K N W+HNGF+N+ KMSKS GNF TI+++L Sbjct: 234 LAFPHHTNEMAQSE-AHTGQKFVNYWMHNGFVNVNNEKMSKSLGNFTTIHDML------- 285 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKG---I 346 + + P+ IRL + T YR PI+++ LT+A + L + + T+ G Sbjct: 286 KHYDDPMTIRLLLATTQYRRPINYSSDTLTQARVALDRIRTGYRNLSFRLTNADVGKDAD 345 Query: 347 IDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK- 398 ++ A+ A+ +D NT +A+ A+ +L L A I+ IE + Sbjct: 346 LESAIKKQINIFEMAMDDDFNTPNALAAVFELV--------TLANTYADNKIVKIETVQY 397 Query: 399 --------------EHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 LN I+ A ++L+ R+ F +D IR+QL G I+ Sbjct: 398 LLDTILLLLGVFGITELNDKPQITDAQKQLLAARVSARAAHDFELSDQIRQQLSESGIIV 457 Query: 443 EDYKNPDNGQRMTRWKQ 459 ED GQ RW Q Sbjct: 458 ED---TTQGQ---RWHQ 468 >gi|295692211|ref|YP_003600821.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus ST1] gi|295030317|emb|CBL49796.1| Cysteinyl-tRNA synthetase [Lactobacillus crispatus ST1] Length = 477 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 178/503 (35%), Positives = 266/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAEKFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSK 344 R V+R M YR I+++ + L +A +L ++ T S Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTLTNINYRLADDTASEES 347 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+++ A+ +D N +A+ A+ +DLLP+ NA+A+ Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAI----------YDLLPVVNANANAARADKQ 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N I+ LV++R K ++++D IR Sbjct: 398 ELQKFKEKLASWLLVFGVDTNKLCVKNAGSN-DDEIDALVKKRDEARANKDWATSDQIRD 456 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 457 QLKEMGITIQD--TP-QGTRWTR 476 >gi|126458659|ref|YP_001054937.1| cysteinyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548] gi|189082072|sp|A3MS54|SYC_PYRCJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126248380|gb|ABO07471.1| cysteinyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548] Length = 473 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 171/472 (36%), Positives = 250/472 (52%), Gaps = 42/472 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT R++ EF P R YVCG T YD H+G+ R + FD+ R L E Sbjct: 1 MRIYNTATRQVEEFTTYTPGLARGYVCGITPYDHVHVGHGRVYVFFDMFRRYLESLGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII +AR+E + + +F + + RL PR Sbjct: 60 -VRLVVNFTDIDDKIIAKAREEFGPEAYKRWREV-PERYIAEFFEVSKRLFIKPAYAYPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T ++ M+ I ++ G AY A + + F+ +PNYG SR++I+E G RV + Sbjct: 118 VTENVDDMVKWISALVEKGFAYVAPDGSVYFEVGKVPNYGVLSRQRIEELIAGARVEPEP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK +P EP W SPW GRPGWH+EC MS+ +LG FD HGGG DLIFP Sbjct: 178 GKRNPLDFALWKSWSPGEPWWNSPWCPGRPGWHLECVVMSTKHLGVPFDFHGGGADLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIA + ++ A WIH G+L + G KMSKS GN IT+ E+L K+ G + Sbjct: 238 HHENEIAIAKAYFGVDNFAKYWIHVGYLTVRGEKMSKSLGNVITLREVL--SKYSGEA-- 293 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTSK-------------GI 346 +RLA M+HYR+P++F+ + L +AE L + + + S + G Sbjct: 294 ---LRLAYAMSHYRKPMEFSFELLDQAEDIVKTLYTAYDELSQAVADAGDADRERVDIGN 350 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARE--STKNHD-----------LLPIFNASAHILG 393 A SAL +D +T A+Q L+ A+ ST H +L + A ++G Sbjct: 351 FKAAFYSALEDDFSTPEAVQQLYAAAKYIISTVLHKVDKLSKNTVLAILADYVKMADVIG 410 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + + + + K + A++ LV+ R L + + ADY+R++ ++ G L D+ Sbjct: 411 V-LERREVAKEVEEAVKALVEVRARLRSERLYQLADYVRERAKALGAELHDF 461 >gi|256546103|ref|ZP_05473456.1| cysteine--tRNA ligase [Anaerococcus vaginalis ATCC 51170] gi|256398220|gb|EEU11844.1| cysteine--tRNA ligase [Anaerococcus vaginalis ATCC 51170] Length = 472 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 180/496 (36%), Positives = 263/496 (53%), Gaps = 64/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ EF+ ID + +RMYVCGPTVYD+ HIGNARP+++FD + R L+Y + Sbjct: 1 MKIYNTFTRQKEEFKTIDENKVRMYVCGPTVYDYMHIGNARPLVIFDTMRRYLKYLGND- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAP-TH 121 V YV N TD+DDKII +A I D IS +T K + +++D L T Sbjct: 60 -VKYVVNFTDVDDKIINKA--------IKDKISTKEVTDKYIKAYMEDAKDLNLDEEHTI 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--- 178 P+AT + +I ++ ++ AYE+N ++ FD S +YG S + I++ + G Sbjct: 111 HPKATETMDDIIEFVKELVDKDCAYESNGDVYFDISKAKDYGHLSGKNIEDLREGASNRL 170 Query: 179 -VPEKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 +K K+NP DF LWK + E W+SPWG+GRPGWHIECS MS LG+ D+H G Sbjct: 171 DDKDKGKKRNPMDFTLWKATKKEGEVSWDSPWGKGRPGWHIECSTMSKKLLGETIDLHAG 230 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENEIAQS +K AN W+HNG + ++G KMSKS GNF T++++ Sbjct: 231 GEDLQFPHHENEIAQSETRSG-KKFANYWMHNGMIQVDGTKMSKSLGNFFTLHDI----- 284 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW-PQTSTSKG 345 + + V+R +L YR PI+FT ++RL A+ + +TS + Sbjct: 285 --KKEYDLMVVRFWLLSASYRLPINFTREIIEQAKNSLERLNNAKFRMDDLLEKTSGNLK 342 Query: 346 IIDPAVLSALYN-----------DLNTVSAIQALHKLARESTKNHD----------LLPI 384 + ++ L N DLNT A+ L ++++ + D + Sbjct: 343 DEEKDLVKELDNFENNFRKVMDDDLNTADALTVLFEISKFANTKLDENSSKEFVEKTRDL 402 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F +LGIE K+ + I KL++ER K K F AD IR +L G +++D Sbjct: 403 FIKLEDVLGIENRKKTDDSIDEDLINKLIEERKEAKKAKDFKKADEIRDKLSEMGILIKD 462 Query: 445 YKNPDNGQRMTRWKQK 460 + T+W+ K Sbjct: 463 TREG------TKWELK 472 >gi|87301066|ref|ZP_01083907.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 5701] gi|87284034|gb|EAQ75987.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 5701] Length = 493 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 183/511 (35%), Positives = 253/511 (49%), Gaps = 75/511 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL ++ FQ P + +Y CG TVYD H+G+AR IV+DVL R L + G + Sbjct: 3 LRLTNTLTKRTEPFQPRVPGEVSIYCCGVTVYDLCHLGHARSYIVWDVLRRYL-IWRGYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+NITDIDDKI+ RA +E S+ +++ +N F D L L P PR Sbjct: 62 -VTFVQNITDIDDKILRRAAEEGSSM------EVVSERNITAFRDDMDSLNILPPDRVPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT + + +I + G AY A+ ++ F P+YG S R + +Q+ G Sbjct: 115 ATRCLDGIRAMIAELEASGAAYSADGDVYFAVMGQPDYGKLSGRSLSDQQDGASGRLNSD 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K++P DF LWK + P EP + SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EESRKRHPFDFALWKGAKPGEPSFPSPWGPGRPGWHIECSAMVRQELGTTIDIHLGGSDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ E A W+HNG +N++G KMSKS GNF TI LL + Sbjct: 235 IFPHHENEIAQSEAANG-EPLARYWLHNGMVNVDGEKMSKSLGNFTTIRALLASGV---- 289 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTE--------------------------AEILL 334 A +RL +L HYR+P+DF+ + L A++ Sbjct: 290 --SAMTLRLFVLQAHYRKPLDFSREALDAAATGWHGLNEALGLGLNTTFSAALGWADVAA 347 Query: 335 SKWPQTSTSKGIIDP--AVLSALYNDLNTVSAIQALHKLAR-----------------ES 375 + P G+ + AL +DLNT +A+ L +LAR E Sbjct: 348 ATQPAPGHDAGLETSRQGFIDALDDDLNTSAALAVLFELARPLRALARRLERGAEASGED 407 Query: 376 TKNHDLLPIFNASAHILGIE------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 H + + +LG+E E I L+ ERL + K++ AD Sbjct: 408 RALHARWLLLQELSGVLGLEPEISSRSEAEAGAGPAPAQILALISERLAARQQKRYPEAD 467 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR +L S+G L D PD T W ++ Sbjct: 468 AIRDRLRSEGIELID--RPDG---TTEWIRR 493 >gi|271962520|ref|YP_003336716.1| cysteine--tRNA ligase [Streptosporangium roseum DSM 43021] gi|270505695|gb|ACZ83973.1| Cysteine--tRNA ligase [Streptosporangium roseum DSM 43021] Length = 465 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 171/472 (36%), Positives = 247/472 (52%), Gaps = 50/472 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYG 62 + +Y+T R + EF ++P +Y+CG TV HIG+ R + FDVL R ++R Y Sbjct: 2 SLHLYDTSVRTVREFVPVEPGRASIYLCGATVQAPPHIGHIRSGVNFDVLRRWMVRSGYE 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+ RN+TDIDDKII A E +P +I +N + F L CL PT + Sbjct: 62 ---VTFCRNVTDIDDKIIRVAADE--GVPW----FVIAERNQRAFTWAYEVLGCLPPTVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 PRAT H+P+MI L++ +I GHAY ++ ++ FD S + YGS S ++++ + Sbjct: 113 PRATGHVPEMIELMERLIAAGHAYASSGDVYFDVMSYADRYGSLSNQRLENMRAAGDTDT 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK P EP W +PWGRGRPGWH+ECSAM++ YLG FDIHGGG+DLI Sbjct: 173 DSCKRDPRDFALWKGEKPGEPTWPTPWGRGRPGWHLECSAMATKYLGPTFDIHGGGVDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE+ QS A + A W+HNG L + KMSKS GN + I E+ TKK Sbjct: 233 FPHHENELTQSQAAG--DGFARYWMHNGMLKIGAEKMSKSLGNSLLIPEV--TKKV---- 284 Query: 302 WPAPV-IRLAMLMTHYREPIDFTV----------QRLTEAEILLSKWPQTSTSKGIIDPA 350 PV +R + HYR ID++ QR+ ++ + + A Sbjct: 285 --RPVELRYYLAAPHYRSSIDYSEEALAEAASAYQRIEGFVTRAAEVIHDVDAHAPLPQA 342 Query: 351 VLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASAH----ILGIEVCKEH- 400 AL +DL T A+ +H++ RE + N + + A +LG++ E Sbjct: 343 FADALDDDLGTPQALAVVHEVVREGNVALAQGNKEQVARLLAETQNMLDVLGLDPRSEQW 402 Query: 401 --------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + +++R K F++AD IR QL G ++ED Sbjct: 403 RSSGGDTGLRSTVDALVSVALEQRQAARGRKDFAAADGIRDQLAGAGILVED 454 >gi|225468584|ref|XP_002263880.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 484 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 176/503 (34%), Positives = 251/503 (49%), Gaps = 110/503 (21%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNT+ ++ F+ + + MYVCG T YD +H+G+AR + FDVLYR L++ E Sbjct: 6 ELRVYNTMTQQKEIFKPVVDGKVSMYVCGVTAYDLSHLGHARAAVCFDVLYRYLQHLGYE 65 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN TD+DDKII RA + + + ++S+ Q+++ D T L CL PT QP Sbjct: 66 --VTYVRNFTDVDDKIIRRANE------LGENPLTLSSRFCQEYLDDMTDLQCLTPTQQP 117 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R ++H+ Q+ +I II + AY + ++ F PNYG S RK+++ + G RV Sbjct: 118 RVSDHMDQIKDMITQIINNDCAYIIDGDVYFAVDKSPNYGRLSGRKLEDNRAGERVAVDS 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAMS+HYL FDIHGGG+DLIFP Sbjct: 178 RKRNPADFALWKAAKPDEPSWDSPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSC A +SN I +L + Sbjct: 238 HHENEIAQSCAA----------------------CQESN-----ITDL----------YH 260 Query: 304 APVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSKGIIDP 349 +R +L THYR P+++++ Q L + E LS + + + I P Sbjct: 261 PLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSPFQEVNGQNVCITP 320 Query: 350 AV---LSALYNDLNT---------------------------------------VSAIQA 367 A +S L D T +SA+Q+ Sbjct: 321 AAKDCISKLQTDFQTKMSDDLSTPHILNASLQEALRFINSGLNMLKKKQQKQQQLSAVQS 380 Query: 368 LHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA------IEKLVQERLILLK 421 L +L +E +L + + A+ EV ++ K + A + L++ER + K Sbjct: 381 LTELEKEVKGVLSVLGLLSTLAY---SEVLQQLKGKALRRAGMIEDDVLHLIEERALARK 437 Query: 422 MKKFSSADYIRKQLESKGFILED 444 K FS D IR L SKG L D Sbjct: 438 NKNFSRGDQIRADLASKGIALMD 460 >gi|296106895|ref|YP_003618595.1| cysteinyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] gi|295648796|gb|ADG24643.1| cysteinyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] Length = 413 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 176/432 (40%), Positives = 235/432 (54%), Gaps = 41/432 (9%) Query: 47 MIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQ 106 M+ FDV+ R LR + VTYVRNITDIDDKII RA + SI +T++ Sbjct: 1 MVAFDVMVRYLRSQGFD--VTYVRNITDIDDKIIARASERDVSI------DELTAQYIDA 52 Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSF 165 DT L L P H+PRAT HI +I LIQ ++ G AY N ++ ++ + P YG Sbjct: 53 MNNDTHALNILPPDHEPRATGHIETIIRLIQRLLEKGSAYVSENGDVCYEVDTFPEYGKL 112 Query: 166 SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSH 225 S + I+ G+RV K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H Sbjct: 113 SHKDIEGLVSGSRVEIVKEKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMH 172 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 LG+ FDIHGGGLDL FPHHENEIAQS A + AN W+H G L + G KM+KS GNF Sbjct: 173 ELGEQFDIHGGGLDLQFPHHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNF 231 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------- 337 TI ++L+ VIR +L +HYR P++++ + L A+ L + Sbjct: 232 YTIADVLKEHH-------PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVP 284 Query: 338 PQTSTSK--GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG 393 PQT+ SK A+ +D NT A+ L +LA E K++ L A ILG Sbjct: 285 PQTADSKLDEYWQEQFNQAMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILG 344 Query: 394 I------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + L + + IE+L+ ERL + ++ AD IR L SKG LED Sbjct: 345 FLQKDPESFLQSGLAEEEKLVIEQLIAERLQARAERNWAKADQIRTDLLSKGIELED--- 401 Query: 448 PDNGQRMTRWKQ 459 G T W++ Sbjct: 402 ---GATGTTWRR 410 >gi|15675744|ref|NP_269918.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71911468|ref|YP_283018.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] gi|21264023|sp|Q99XZ9|SYC_STRP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13622964|gb|AAK34639.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71854250|gb|AAZ52273.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] Length = 447 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 167/462 (36%), Positives = 249/462 (53%), Gaps = 42/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + +YVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNIYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q S P ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAATQAGVS-PKE-----LSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH NEIAQS + KT AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEA--KTGKTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTVD---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTS------KGIID 348 V+R + YR+PI+FT + + +AEI L + P T T+ + +I Sbjct: 288 ---GQVLRFFLATQQYRKPINFTEKTIHDAEINLKYLKNTLQQPLTETADEQELKQFVI- 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---FNASAHILGIEVCKEHLNKNI 405 A A+ +D NT + I + +A+ P+ F + GI +E L Sbjct: 344 -AFQDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL---- 398 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IE L+ +R + F++AD IR QL +G L D K+ Sbjct: 399 EVDIEALIAKRQEARANRDFATADAIRDQLAVQGIKLLDTKD 440 >gi|293378885|ref|ZP_06625040.1| cysteine--tRNA ligase [Enterococcus faecium PC4.1] gi|292642426|gb|EFF60581.1| cysteine--tRNA ligase [Enterococcus faecium PC4.1] Length = 446 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 253/470 (53%), Gaps = 62/470 (13%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNAR I FD + R Y G K V +V N TD+DDKII A + Sbjct: 1 MYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYR-GYK-VDFVSNFTDVDDKIIRTANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + P + + + F +DT L T PR +H+P ++ IQ ++ G+AYE Sbjct: 59 IAAPE------VADRFIRAFEEDTKALNVEPATLHPRVMDHMPDILAFIQVLVEKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PEKYHKKNPADFILWKRSTPMEPGW 204 ++ ++ + T NYG S + IDE ++G E+ K++P DF LWK++ P E W Sbjct: 113 SSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEEQQQKEDPLDFALWKQAKPGEISW 172 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 +SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL FPHHENEIAQS A +K AN Sbjct: 173 DSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLEFPHHENEIAQS-EAKTGKKFANY 231 Query: 265 WIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 W+HNG++ + + KMSKS GNFIT++E+++ V+R M T YR PI + Sbjct: 232 WMHNGYVTIGEDDEKMSKSLGNFITVHEMIQNVD-------PQVLRFFMATTQYRRPIRY 284 Query: 323 TVQRLTEAEILLS---------KWPQTSTSKGIIDPA------------VLSALYNDLNT 361 + + EA L K+ Q + S+ + D A + + +D N Sbjct: 285 SETTMKEAATNLQRLKNTFDNLKFRQETASENLADDADKITLLENLEQRFIEEMDDDFNA 344 Query: 362 VSAIQALHKLAR-------ESTKNHDLL----PIFNASAHILGIEVCKEHLNKNISIAIE 410 + I +++LA+ ++ + +L +F+ I GI E L + IE Sbjct: 345 ANGITVVYELAKWLNTYLDQAEVSAAVLAQGEALFSQWLSIFGILFTAEEL---LDEEIE 401 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +L++ER + F+ +D IR L+ KG +LED P TRW+++ Sbjct: 402 QLIEERNQARSNRDFARSDEIRDLLKEKGILLED--TPQG----TRWRRE 445 >gi|307594505|ref|YP_003900822.1| cysteinyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429] gi|307549706|gb|ADN49771.1| cysteinyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429] Length = 491 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 181/492 (36%), Positives = 256/492 (52%), Gaps = 50/492 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNT + + + + P R+YVCG T YD H+G+AR + +D+ R L Y E Sbjct: 10 IIVYNTASKNLEKITLLRPGLARIYVCGLTPYDSMHVGHARTFVFYDIFRRYLEYLGVE- 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TDIDDKII RARQE IN + S+ ++F RL P+ Sbjct: 69 -VRFVTNFTDIDDKIINRARQEFGGELINRWYEV-PSRYIKEFFDAMDRLYVKRAYAYPK 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +I M+ IQ ++ AY + + + FD + +P YG FS +KI++ G RV + Sbjct: 127 VTENINDMLKWIQELVSKNLAYVSPDGSVYFDITKVPRYGEFSGQKIEDLIAGARVEPEP 186 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK + EP W SPW GRPGWH+EC MSS YLG FDIHGGG DLIFP Sbjct: 187 GKRNPLDFALWKSWSEGEPWWNSPWSPGRPGWHLECVVMSSKYLGVPFDIHGGGQDLIFP 246 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIA + I+ A WIH G + + G+KMSKS GN I I E+L R + Sbjct: 247 HHENEIAIARVYFGIDYFARYWIHVGLVTIRGQKMSKSLGNIIPIMEVL-------RKYD 299 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 V+RL MT YR+P+DF ++ + A +L++ + G D +LS Sbjct: 300 GEVLRLYYAMTQYRKPMDFDPDALDQVRNSLMSVYAAYDMLTEAINEAPDTGDRDNELLS 359 Query: 354 -----------ALYNDLNTVSAIQALHKLAR-------ESTKNH------DLLPIFNASA 389 +L ND+NT A+ AL AR +T+++ + L F+ A Sbjct: 360 KVNEFVNSFEESLNNDINTSGAVAALMDFARYIASTVIYNTQHYSRNALTNALTAFSDLA 419 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +ILGI + + L ++ I+ L++ R L K F AD IR +L G ++ D N Sbjct: 420 NILGI-LNRTRLPPSLVSLIDTLIRIRAQLRARKMFDVADEIRNELSKLGVVVSDVGNKT 478 Query: 450 ----NGQRMTRW 457 + ++T+W Sbjct: 479 YWYIDRDKITQW 490 >gi|195953483|ref|YP_002121773.1| cysteinyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1] gi|229558710|sp|B4U9I4|SYC_HYDS0 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|195933095|gb|ACG57795.1| cysteinyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 488 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/495 (35%), Positives = 253/495 (51%), Gaps = 74/495 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 +YNTL ++ EF I+P + +Y CG TVYD +H+G+ R +IVFDV R Y EK Sbjct: 5 LYNTLSAELEEFVPINPPQVNIYTCGVTVYDDSHVGHGRSLIVFDVFRR-----YLEKLG 59 Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN TDIDDKII +A +E N I ++ ++ D + +P Sbjct: 60 YRVKFVRNFTDIDDKIINKANEE------NKDFMSIANRYIARYYLDMEAINVKPANVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T H+ ++I LI +I G AYE++ +I F S +YG S+R +E + G R+ Sbjct: 114 RVTEHMEEIISLISKLIELGKAYESDGDIYFSIDSFKDYGKLSKRSPEELEAGARIEPSL 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK S EPGWESPW GRPGWH EC AM +LG+ DIH GG+DL+FP Sbjct: 174 KKRNPLDFALWKASKSHEPGWESPWSYGRPGWHTECVAMIFKHLGETIDIHAGGIDLVFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ + A W+HNG + + G+KMSKS GNF+T+ E+ + Sbjct: 234 HHENEIAQAESITG-KPFARYWMHNGLVTVGGKKMSKSLGNFVTLKEIY-------TKYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------TSTSKGIIDPAVL 352 V+RL +L THYR P+DF+ +++ E + + K ++D Sbjct: 286 PDVLRLLVLFTHYRSPLDFSFEKMEETKKAYERLKSAIEDIEPLKAIAKEGKPVVDIDFY 345 Query: 353 S-----------ALYNDLNT-------VSAIQALHKLARESTKNHDLLP------IFNAS 388 S AL D NT +A+ L+K ES K + P +F A+ Sbjct: 346 SLEKSTQEQFYKALSEDFNTSLAIAHIFNAVAELNKAKTESFKIGYITPKELEGYLFLAN 405 Query: 389 A------HILG----------IEVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYI 431 + I G ++ + + NIS +E L++ R + + K F AD+I Sbjct: 406 SLKQTLKDIFGLLEENTLQNTLKTLEPASSVNISTEFLEILIKARNLAKENKDFKVADFI 465 Query: 432 RKQLESKGFILEDYK 446 R +L + G LED K Sbjct: 466 RDELLNYGIKLEDTK 480 >gi|227485588|ref|ZP_03915904.1| cysteinyl-tRNA synthetase [Anaerococcus lactolyticus ATCC 51172] gi|227236454|gb|EEI86469.1| cysteinyl-tRNA synthetase [Anaerococcus lactolyticus ATCC 51172] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 183/479 (38%), Positives = 262/479 (54%), Gaps = 56/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R F+ I+ + I+MYVCGPTVYD+ HIGNARP+++FD R + Y + Sbjct: 1 MKIYNTLSRTKEVFKPIEENKIKMYVCGPTVYDYMHIGNARPLVIFDTFRRFMTYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC-LAPTHQP 123 VTYV N TD+DDKII+++ E + +T + Q++ D L T P Sbjct: 60 -VTYVVNFTDVDDKIIKKSIVEGITTKE------VTDRYIAQYMIDAKALNLDEEDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPE 181 RAT + +I ++ +I G AY ++ ++ FD S +YG SR+ +D+ G R+ + Sbjct: 113 RATEVMDDIINFVKGLIDKGMAYVSDGDVYFDVSKKTDYGKLSRKNLDDLVHGASQRLDD 172 Query: 182 K--YHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 KKNPADF LWK + E W+SPWG+GRPGWHIECS M+ LG DIH GG Sbjct: 173 NDAGKKKNPADFTLWKATKLSGEVAWDSPWGKGRPGWHIECSTMNKKILGDTIDIHAGGE 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS + + K AN W+HNG + + G KMSKS GNF T++++ Sbjct: 233 DLEFPHHENEIAQSEALNDV-KFANYWMHNGMIQVNGSKMSKSVGNFFTLDDI------- 284 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLT----EAEILLSKWPQ---TS 341 + + IR +L T YR+PI+FT + RL +AE LL+K + +S Sbjct: 285 KKEYDLMTIRFWLLTTSYRQPINFTKEIIDQAQASLDRLNNAYFKAEELLAKTSEKEISS 344 Query: 342 TSKGIIDPAV------LSALYNDLNTVSAIQALHKLAR------ESTKNHDLL----PIF 385 K ++ V +S + +DLNT AI L LA+ E + D + + Sbjct: 345 VEKDLLQILVDKENEFVSVMEDDLNTADAITVLFDLAKFINTNLEGDSSKDFVEKTFETY 404 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +LG+ + K+ ++ IE+ + ER K K F+ AD IR L+ G IL+D Sbjct: 405 SRLYDVLGL-LAKKKESEVDEAFIEEKIAERNSAKKAKDFAKADKIRDDLKEMGIILKD 462 >gi|307704342|ref|ZP_07641259.1| cysteinyl-tRNA synthetase [Streptococcus mitis SK597] gi|307622102|gb|EFO01122.1| cysteinyl-tRNA synthetase [Streptococcus mitis SK597] Length = 423 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 169/446 (37%), Positives = 239/446 (53%), Gaps = 41/446 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ H+GNAR + FD + R Y E V Y+ N TD+DDKII RA++E Sbjct: 1 MYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE--VAYISNFTDVDDKIINRAKEEG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + P + +K F +D T L T PR + +I ++ +I G AYE Sbjct: 59 IT-PQE-----VANKYIAAFREDVTALGVKPATRHPRVVEFMADIIRFVEELIEKGFAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PEKYHKKNPADFILWKRSTPMEPGW 204 + ++ F NY + + +++ ++G E K+NP DF LWK + P E W Sbjct: 113 SQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENPVDFALWKAAKPGEISW 172 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-AN 263 +SPWG GRPGWHIECS MS+ LG DIHGGG DL FPHH NEIAQS + KT AN Sbjct: 173 DSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNEIAQSEA--KTGKTFAN 230 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNGF+N++ KMSKS GNFIT+++ L+T V+R HYR+PI+FT Sbjct: 231 YWMHNGFVNIDNVKMSKSLGNFITVHDALKTID-------GQVLRFFFATQHYRKPINFT 283 Query: 324 VQRLTEAEILLSKWPQTSTS--KGIIDPAVL--------SALYNDLNTVSAIQALHKLAR 373 + + +AE L T G +D L +A+ D N + I + ++A+ Sbjct: 284 EKAVRDAETNLKYLKNTYEQPFTGNVDAQELQAFKDKFVAAMDEDFNAANGITVVFEMAK 343 Query: 374 E-STKNHD--LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 ++ N+D + A + GI +E L+ IE L+Q+R + F++AD Sbjct: 344 WINSGNYDASVKEALAAMLEVFGIVFIEEVLDAE----IETLIQKRQEARANRDFATADQ 399 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTR 456 IR QL ++G L D K +G R TR Sbjct: 400 IRDQLAAQGIKLLDTK---DGVRWTR 422 >gi|295838034|ref|ZP_06824967.1| cysteine-tRNA ligase [Streptomyces sp. SPB74] gi|197699162|gb|EDY46095.1| cysteine-tRNA ligase [Streptomyces sp. SPB74] Length = 467 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 249/478 (52%), Gaps = 63/478 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTRARQIRDFFPLVPGCVSIYLCGATVQGVPHIGHIRSGLDFDIMQRWFAYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKII++ A Q+ P I +N + F L CL PT++P Sbjct: 62 -VTFVRNVTDIDDKIIKKSAEQDRPWWAIG-------YENERAFNAAYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +MI +++ +I GHAYE+ + FD S P+Y S +++D + E Sbjct: 114 RATGHITEMIEMMRTLIARGHAYESGGNVYFDVRSFPDYLELSHQELDNLLQPSGEGES- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FD+HGGGLDLIFP Sbjct: 173 GKRDARDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGTAFDVHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS ++ A W+HN ++ + G KM+KS GN + ++E+++ W Sbjct: 233 HHENEIAQSRAYG--DEFAKYWVHNAWVTMSGEKMAKSLGNSVLVSEMVQ-------RWR 283 Query: 304 APVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTSKGI 346 V+R + HYR I+++ VQR+TE L+ ++ Sbjct: 284 PIVLRYYLATPHYRSMIEYSEEAVAEAESAFGRIEGFVQRVTE----LNGGEVAPAAE-- 337 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVC 397 + PA A+ +DL A+ +H R+ L A +LG++ Sbjct: 338 VPPAFAEAMDDDLGVPQAVAVVHTTVRQGNSALGADDKEAAVARLAEVRAMLGVLGLDPQ 397 Query: 398 K-----------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++++R K + +AD IR QL G +ED Sbjct: 398 SPQWAAVGGEQAEDLHGVVDTLVRLVLRQREDARARKDWPAADAIRDQLAQSGLAIED 455 >gi|300362340|ref|ZP_07058516.1| cysteine--tRNA ligase [Lactobacillus gasseri JV-V03] gi|300353331|gb|EFJ69203.1| cysteine--tRNA ligase [Lactobacillus gasseri JV-V03] Length = 472 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 258/478 (53%), Gaps = 56/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRQKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + ++ + F++DT L T PR Sbjct: 62 -VKYVSNFTDVDDKMINEARKEHTTV------GELANRYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIKEIIDFVQDLIDKGFAYEVDGDVYYRAKKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG+ DIHGGG D Sbjct: 175 EQNKKEDPIDFALWKAQKEDDEIAWDSPWGKGRPGWHIECSVMSTKYLGETIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR PI+++ L +AE +L ++ T Sbjct: 289 --KEIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLADEQEPLED 346 Query: 341 STSKGIIDPA---VLSALYNDLNTVSAIQALHKLAREST----KNHDLLPIFNASA---- 389 +T + + A + A+ +D N +A+ ++ LA K+ P + Sbjct: 347 NTLRDNLTQAKAEFIEAMDDDFNVQNALSIMYDLASNLNTHLQKDQVDKPALKKAKKLLL 406 Query: 390 ---HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+ ++ + + IE +V +R K K ++ +D +R +L++KG ++ED Sbjct: 407 DWLEIFGVSFNEKQADDDDE--IEAMVAKRDEARKNKNWAESDRLRDELQAKGIVIED 462 >gi|242398167|ref|YP_002993591.1| Cysteinyl-tRNA synthetase [Thermococcus sibiricus MM 739] gi|242264560|gb|ACS89242.1| Cysteinyl-tRNA synthetase [Thermococcus sibiricus MM 739] Length = 468 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 239/467 (51%), Gaps = 56/467 (11%) Query: 17 EFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID 76 EF+ + IRMYVCGPTVYD+ H+G+AR I FDV+ R L + V V N TDID Sbjct: 7 EFKPLRDDEIRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEH--KGYTVLMVMNFTDID 64 Query: 77 DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLI 136 DKII RA + + + K + F++D L PR T HI +I + Sbjct: 65 DKIIRRANE------TGEDPKELAEKFLKYFLEDMKALKVKPADIYPRVTEHIQDIIEFV 118 Query: 137 QNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR 196 + + G+AY +++ + F+ YG S+ +++ + G RV KKNP DF LWK+ Sbjct: 119 RKLEEKGYAYGSSDGVYFEVRKYEKYGKLSKVNLEDLRKGVRVEPGEGKKNPEDFALWKK 178 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-CCA 255 + P EP WESPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIFPHHENEIAQ+ C Sbjct: 179 AKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPHHENEIAQTEACT 238 Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH 315 + + W H GF+ + G KMSKS GNF+TI ELL+ + VIR +L H Sbjct: 239 GK--EWVKYWFHTGFVMVSGEKMSKSLGNFVTIRELLQ-------RYSPEVIRFFVLQKH 289 Query: 316 YREPIDFTVQRLTEAEILLS--------------------KWPQTSTS--KGIIDP--AV 351 YR P+D+T + + A+ L KW + + I D + Sbjct: 290 YRSPLDYTEEGIQHAKNNLERLYNTIENIRIAMEKVEVPFKWEKEEFELYETIRDAKKKL 349 Query: 352 LSALYNDLNTVSAIQALHKLAR---------ESTKNHDL---LPIFNASAHILGI--EVC 397 A+ +D NT A++ + ++A E K L L F + + GI E Sbjct: 350 YEAMDDDFNTAEAMKPIFEVANAVNAYLTKVEKPKESVLRKALEFFRIISEVFGIFEEYF 409 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 KE IE L++ R L K K F AD IR QL G LED Sbjct: 410 KEAKETKEEELIELLIEVRSALRKQKNFELADKIRAQLRELGIQLED 456 >gi|315428011|dbj|BAJ49600.1| cysteinyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum] Length = 475 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 260/493 (52%), Gaps = 66/493 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKI+NT R + F+ P ++ MYVCGPTVYD AH+G+AR + FD + R L + G + Sbjct: 2 IKIFNTYSRSLEVFEPHIPGHVTMYVCGPTVYDVAHLGHARTYVAFDAVIRFLEFM-GYR 60 Query: 65 CVTYVRNITDI-------DDKII---ERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y RN+TD+ +D++I ER R+ HP + K +F +D L Sbjct: 61 -VKYARNVTDVGHLRETGEDRMIVGAERLRK-HPME--------VADKYMMEFFRDMDAL 110 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P QPRA+ HIP++I ++ ++ G+ Y + + FD S P+YG S K +E Sbjct: 111 GIRRPDIQPRASMHIPEIIEAVEKLVDKGYGYVIDGSVYFDISKFPDYGKLSNIKPEELL 170 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 M R+ KK+PADF LWK S P P W++PWGRG PGWHIECS MS YLG+ DI Sbjct: 171 M-HRIDPDPRKKHPADFALWKESPPSYPFSWKTPWGRGFPGWHIECSIMSMKYLGEQIDI 229 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG +LIFPHHENEIAQS + W+H G L + GR M KS GNFITI + L+ Sbjct: 230 HGGGQELIFPHHENEIAQSEALTGKKPFVKYWMHTGELTVGGRGMHKSYGNFITIQDALK 289 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------ 347 T +P+ V+RL +L HYR P+D++ + + +A K + +I Sbjct: 290 T-------YPSDVLRLFILSAHYRTPLDYSEKSMEQAAENFDKITNFYENLSLIAEEDRA 342 Query: 348 ---DPAV-----------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHI-- 391 DP++ + A+ D NT +A+ ++ ++ D + +AH+ Sbjct: 343 KPRDPSLDELGDVFKQSFIEAMSEDFNTPNALAIVYDFMKKVNTRLDDIG-HEQAAHLRQ 401 Query: 392 LGIEVCK-----EHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L +E C+ + + + S A ++ LV+ R L K + AD IR L +G + Sbjct: 402 LFLETCRALGLLQKIERRSSAAEVMEFVKTLVEVRRELRKRGMYDLADRIRNMLAERGIV 461 Query: 442 LEDYKNPDNGQRM 454 +ED K G+R+ Sbjct: 462 VEDTK---EGERI 471 >gi|319760441|ref|YP_004124379.1| cysteinyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF] gi|318039155|gb|ADV33705.1| cysteinyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF] Length = 468 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 191/490 (38%), Positives = 254/490 (51%), Gaps = 59/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL +K + I+ + I++YVCG TVYD H+G+AR +FD + R L Y + Sbjct: 2 LKIFNTLTQKKEILKPINFNTIKLYVCGVTVYDLCHLGHARTFSIFDTIIRYLNYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKII+RA H + I T++ Q+ D L L P H+P+ Sbjct: 61 -VEYTRNITDIDDKIIQRAFSHH------ETIVQFTNRMIQEMYIDLDNLNILRPKHEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 TN+I +I I ++ HAY N +++F ++ YG SR K Q + Sbjct: 114 VTNYIDTIINCIHLLLKKKHAYITRNGDVMFSINTANKYGILSRNKKLIQSISKYTNHNT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKN ADF+LWK + EP W SPW +GRPGWHIECSA+S + LGK DIHGGG DL+FP Sbjct: 174 IKKNSADFVLWKSAKFNEPYWMSPWSKGRPGWHIECSAISHNILGKNIDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKT--ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 HHENEIAQS CA I+ NIW+H G L L KMSKS NF TI E+L + Sbjct: 234 HHENEIAQSACAYSIDPNVYVNIWMHVGMLLLNNEKMSKSLNNFFTIREIL-------KK 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA------- 354 + IR +L HYR + + + A++ L + I+P V SA Sbjct: 287 YDPETIRYFLLSAHYRNQLKYNDNNMKSAQLALKRLYIALYG---INPIVHSANDEERYF 343 Query: 355 -------LYNDLNTVSAIQAL----HKLARESTKNH-----DLLPIFNASAHILGIEV-- 396 + +D NT A L H+L R +K++ L A+ILGI Sbjct: 344 TLKFIEKMNDDFNTPEAYSVLFEMAHELNRLKSKHYYIRAQRLATQLKLLANILGILYQN 403 Query: 397 ------CKEHLNKN-ISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 C+ NKN I I+KL+Q R K K + AD IR QL + G ILED P Sbjct: 404 PENYLQCQVSKNKNPFEIEKIQKLIQIREDARKNKNWELADKIRTQLTTLGVILED--EP 461 Query: 449 DNGQRMTRWK 458 + TRW+ Sbjct: 462 EGK---TRWR 468 >gi|307706127|ref|ZP_07642946.1| cysteinyl-tRNA synthetase [Streptococcus mitis SK321] gi|307618527|gb|EFN97675.1| cysteinyl-tRNA synthetase [Streptococcus mitis SK321] Length = 423 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 170/447 (38%), Positives = 242/447 (54%), Gaps = 43/447 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ H+GNAR + FD + R Y E V Y+ N TD+DDKII RA++E Sbjct: 1 MYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGFE--VAYISNFTDVDDKIINRAKEEG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + P + K F +D T L T PR + +I ++++I G AYE Sbjct: 59 IT-PQE-----VADKYIAAFREDVTALGVKPATRHPRVVEFMADIIRFVEDLIGKGFAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PEKYHKKNPADFILWKRSTPMEPGW 204 + ++ F NY + + +++ ++G E K+NP DF LWK + E W Sbjct: 113 SQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEETARKENPVDFALWKAAKSGEISW 172 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-AN 263 +SPWG GRPGWHIECS MS+ LG DIHGGG DL FPHH NEIAQS + KT AN Sbjct: 173 DSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNEIAQSEA--KTGKTFAN 230 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNGF+N++ KMSKS GNFIT+++ L+T V+R HYR+PI+FT Sbjct: 231 YWMHNGFVNIDNVKMSKSLGNFITVHDALKT-------LDGQVLRFFFATQHYRKPINFT 283 Query: 324 VQRLTEAEILLSKWPQTSTS--KGIIDPAVL--------SALYNDLNTVSAIQALHKLAR 373 + + +AE L T G +D L +A+ D N + I + ++A+ Sbjct: 284 EKAVRDAETNLKYLKNTYEQPFTGTVDAQELQAFKDKFVAAMDEDFNAANGITVVFEMAK 343 Query: 374 E-STKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 ++ N+D + A A +L GI +E L+ + IE L+Q+R + F++AD Sbjct: 344 WINSGNYD-ASVKEALADMLEVFGIVFVEEVLD----VEIEDLIQKRQEARANRDFTTAD 398 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTR 456 +IR QL ++G L D K +G R TR Sbjct: 399 HIRDQLAAQGIKLLDTK---DGVRWTR 422 >gi|330718101|ref|ZP_08312701.1| cysteinyl-tRNA synthetase [Leuconostoc fallax KCTC 3537] Length = 469 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 179/485 (36%), Positives = 256/485 (52%), Gaps = 57/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL + F++I P+ I MYVCGPT+Y++ HIGNAR I FD + R + E Sbjct: 2 IHVYNTLTHQKEIFKSIQPNLITMYVCGPTIYNYIHIGNARSAIAFDTIRRYFEFRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII RA +E S + IT K Q F DT L T + + Sbjct: 61 -VNYVSNFTDVDDKIINRAHEEGVSE------ATITEKYAQAFENDTLPLNIKPATVRSK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 AT IP +I + +I G+AYEA+ ++ F YG + + ++E + G PE Sbjct: 114 ATEVIPDIISFVSELIAKGYAYEADGDVYFRARQFKGYGILAHQDLNELEAGASGRLDPE 173 Query: 182 KYHKKNPA-DFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + KK A DF +WK + P W+SPWG GRPGWHIECS M+ YLG D+HGGG+D Sbjct: 174 ELAKKEDALDFAVWKSENRPGVISWDSPWGNGRPGWHIECSVMAQKYLGNTIDVHGGGID 233 Query: 240 LIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 L FPHH NEIAQS R +T + W+HNGF+N+ KMSKS GNFIT++++LE Sbjct: 234 LAFPHHTNEIAQSEA--RTGQTFVHYWLHNGFVNINDEKMSKSLGNFITLHDMLE----- 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIIDPA 350 R IR + T YR PI+++ LT+A + L + + SK + A Sbjct: 287 -RYDDPMTIRYLLSTTQYRRPINYSEDTLTQARVELDRIRTAYRNLHFRMKDSKDGRNEA 345 Query: 351 V-----------LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 V ++A+ +D NT +A+ A+ +L + + LL A Sbjct: 346 VESDINEYKKQFIAAMDDDFNTQNALAAIFELIALANTYSEAAIIQRDTAMLLLETMTAL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + GIE + +++ + L+++R+I + K FS +D IR L+ + I+ED Sbjct: 406 MQVFGIETLMP--VEQLTVEQQSLLEQRVIARQNKDFSESDRIRDILKLQDIIVEDTA-- 461 Query: 449 DNGQR 453 GQR Sbjct: 462 -QGQR 465 >gi|226356626|ref|YP_002786366.1| cysteinyl-tRNA synthetase [Deinococcus deserti VCD115] gi|226318616|gb|ACO46612.1| putative cysteine--tRNA ligase (Cysteinyl-tRNA synthetase) [Deinococcus deserti VCD115] Length = 491 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 189/505 (37%), Positives = 253/505 (50%), Gaps = 77/505 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 I +Y+TL+R+ F P + MY+CGPTVY AH+G+A+ + FDV+ R L Y Sbjct: 14 IFLYDTLQRQKVRFTPTTPGRVGMYLCGPTVYSDAHLGHAKKEVAFDVIRRAFLHLGY-- 71 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V YV NITD+ +DKI +RA E P+ + K FV+D Sbjct: 72 -QVRYVGNITDVGHLQNDADEGEDKIAKRAALEQLE-PME-----VADKYFWSFVRDMEA 124 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L L P+ PRAT HI + I LI+ +I GHAYE+ + FD S P YG S RK+DEQ Sbjct: 125 LNILKPSINPRATGHITEQIRLIEELIERGHAYESQGSVYFDVRSWPEYGKLSGRKLDEQ 184 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGK 229 + GTR + K++P DF LWKR+ E G WESPWG G PGWHIECSAMS YLG+ Sbjct: 185 EEGTREVVREEKRDPRDFALWKRA---EAGHIMRWESPWGVGFPGWHIECSAMSLKYLGE 241 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIHGGGLDL FPHHE EIAQS A A W+HN L + G KMSKS GNF TI Sbjct: 242 GFDIHGGGLDLQFPHHEAEIAQSEAAG--HAFARYWMHNNMLTIGGEKMSKSKGNFTTIA 299 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQ 339 ELLE V+R ++ +HYR +F+ +RLTE + + Q Sbjct: 300 ELLEKHD-------PMVVRFLLVGSHYRSVTEFSEEAFESARNGYRRLTETLHEVGRRLQ 352 Query: 340 TSTSKGI--IDPAVLS-------ALYNDLNTVSAIQALHKLARESTK-------NHDLLP 383 + + +D V + AL +D NT A+ AL L + D L Sbjct: 353 GAPAGATEALDARVQAHTHAFEDALRDDFNTPKAVAALFGLTGDVNAALASGPVGQDTLN 412 Query: 384 IFNASAHILGIEVC---------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + LG V ++ + + +E +++ R K+++ AD +R Sbjct: 413 RVQEAYMALGGGVLGLFHASASERQDDTQVVDTLMELVLKARQHYRLSKQYAQADELRDT 472 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L G +ED K+ RWK+ Sbjct: 473 LARVGVTVEDTKDG------VRWKR 491 >gi|254411359|ref|ZP_05025136.1| cysteinyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] gi|196181860|gb|EDX76847.1| cysteinyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] Length = 482 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 173/497 (34%), Positives = 249/497 (50%), Gaps = 64/497 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F I+ +RMY CG T YD+ H+G+AR I++D R L++ + Sbjct: 3 LTLYNTLTRRKEPFSPIEAGKVRMYCCGITAYDYCHLGHARTCIIWDTARRYLQWRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RARQE S+ ++ + Q + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRARQEGTSM------EAVSERFIQAYFEDMARLNVDEADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LI ++ +AY A ++ + YG S RK+++ + G RV Sbjct: 115 ATHCLDGIKRLIYDLEQKNYAYPAAGDVYYAVRRFGEYGKLSGRKLEDLQAGASGRVEVA 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E KK+ DF LWK S P EP WESPWG GRPGWHIECSAM LG DIH GG Sbjct: 175 DAEAGKKKDAFDFALWKGSKPGEPAWESPWGAGRPGWHIECSAMIRDNLGDTVDIHAGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS + A W+H G + + G KMSKS GNFITI +LL+ Sbjct: 235 DLVFPHHENEIAQSEAVTG-QPLARYWLHTGMVIVNGEKMSKSLGNFITIRDLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSK-------WPQTST 342 R+ +RL +L YR+P+DFT + L A +L W + Sbjct: 289 -RATDPMAVRLFVLQAQYRKPLDFTDEALAAATNGWHTLKDGLLFGDQYGEQLGWQDSDK 347 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PIF 385 + + +A+ +D N + L +LA++ + ++L Sbjct: 348 RQTAVLERFQAAVDDDFNFAEGLAVLFELAKDLGREGNILVHEGKTRTSPQELEAQWQTL 407 Query: 386 NASAHILGIEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 A + G+EV E +++ + IE L+Q+R K K F +D IR +L+++G Sbjct: 408 VELAQVFGLEVQGEEISQESTSGLSDAEIEALIQQRSSARKRKDFEMSDRIRDELKAQGI 467 Query: 441 ILEDYKNPDNGQRMTRW 457 L D +TRW Sbjct: 468 TLIDQSGG-----VTRW 479 >gi|262199957|ref|YP_003271166.1| cysteinyl-tRNA synthetase [Haliangium ochraceum DSM 14365] gi|262083304|gb|ACY19273.1| cysteinyl-tRNA synthetase [Haliangium ochraceum DSM 14365] Length = 495 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 152/402 (37%), Positives = 213/402 (52%), Gaps = 43/402 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++Y+++ R+ +F+ + P +Y+CGPT Y AH+G+A I FDV+ R L + E Sbjct: 3 QIRLYDSIRREKVDFEPLQPGKASIYLCGPTPYAPAHLGHAYSAICFDVIRRALSWLGFE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRNITD++DKI RA E+ P+ + + ++ D R LAP +P Sbjct: 63 --VTFVRNITDVEDKIFARA-AENGEEPL-----ALAERFAAEYNADMARFGVLAPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R + HI ++ LIQ II +G AY + ++ F + YG S + +D+ + G RV Sbjct: 115 RVSTHIEDIVGLIQGIIDNGAAYPVDGDVYFSVEAFKPYGQLSGQSLDDLRAGARVEVDA 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK PADF LWK + P E W++PWGRGRPGWHIECSAMS +LG+ FDIHGGG DL+FP Sbjct: 175 RKKAPADFALWKSAKPGELAWDAPWGRGRPGWHIECSAMSLRHLGQTFDIHGGGKDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+HNGFLN G KMSKS GN ++ + Sbjct: 235 HHENEIAQSQAAHGEDTFARYWMHNGFLNFSGEKMSKSLGNVFGCRQIADAVG------- 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEIL-------------------LSKWPQTSTSK 344 +R + HYR P++F V + + L + T Sbjct: 288 PEALRFFSVSHHYRSPVNFEVDEVDGVTVFRDLEVADRRLDYFYSTLRRLDDFLATGKDP 347 Query: 345 G---------IIDPAVLSALYNDLNTVSAIQALHKLARESTK 377 G + PA AL +D NT I AL + A+ + K Sbjct: 348 GEGEVVPEADKLVPAAREALADDFNTPIVIAALGEAAKLANK 389 >gi|315426666|dbj|BAJ48292.1| cysteinyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum] Length = 475 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 175/492 (35%), Positives = 257/492 (52%), Gaps = 64/492 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKI+NT R + F+ P ++ MYVCGPTVYD AH+G+AR + FD + R L + G + Sbjct: 2 IKIFNTYSRSLEVFEPHLPGHVTMYVCGPTVYDVAHLGHARTYVAFDAVIRFLEFM-GYR 60 Query: 65 CVTYVRNITDI-------DDKII---ERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y RN+TD+ +D++I ER R+ HP + K +F +D L Sbjct: 61 -VKYARNVTDVGHLRETGEDRMIVGAERLRK-HPME--------VADKYMMEFFRDMDAL 110 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P QPRA+ HIP++I ++ ++ G+ Y + + FD S P+YG S K +E Sbjct: 111 GIRRPDIQPRASMHIPEIIEAVEKLVDKGYGYVIDGSVYFDISKFPDYGKLSNIKPEELL 170 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 M R+ KK+PADF LWK S P P W++PWGRG PGWHIECS MS YLG+ DI Sbjct: 171 M-HRIDPDPRKKHPADFALWKESPPSYPFSWKTPWGRGFPGWHIECSIMSMKYLGEQIDI 229 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG +LIFPHHENEIAQS + W+H G L + GR M KS GNFITI + L+ Sbjct: 230 HGGGQELIFPHHENEIAQSEALTGKKPFVKYWMHTGELTVGGRGMHKSYGNFITIQDALK 289 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------ 347 T +P+ V+RL +L HYR P+D++ + + +A K + +I Sbjct: 290 T-------YPSDVLRLFILSAHYRTPLDYSEKAMEQAAENFDKITNFYENLSLIAEEDRD 342 Query: 348 ---DPAV-----------LSALYNDLNTVSAIQALHKLARESTKNHD---------LLPI 384 DP++ + A+ D NT +A+ ++ ++ D L + Sbjct: 343 KPRDPSLDELGDVFKQSFIEAMSEDFNTPNALAIVYDFMKKVNTRLDDIGHEQAAHLRQL 402 Query: 385 FNASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 F + +LG+ ++ + + ++ LV+ R L K + AD IR L +G ++ Sbjct: 403 FLETCRVLGLLQKIERRSSAAEVMEFVKTLVEVRRELRKRGMYDLADRIRNMLAERGIVV 462 Query: 443 EDYKNPDNGQRM 454 ED K G+R+ Sbjct: 463 EDTK---EGERI 471 >gi|297623875|ref|YP_003705309.1| cysteinyl-tRNA synthetase [Truepera radiovictrix DSM 17093] gi|297165055|gb|ADI14766.1| cysteinyl-tRNA synthetase [Truepera radiovictrix DSM 17093] Length = 486 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 179/498 (35%), Positives = 258/498 (51%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F+ I P ++ MY+CGPTVY H+G+AR I+FDVL R L Y G + Sbjct: 6 LQLYNTLTRRKEPFEPITPGHVGMYLCGPTVYSEPHLGHARGPILFDVLRRYLEYL-GLR 64 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V V NITD+ +DK+++RA+ E P+ I K + +L Sbjct: 65 -VRLVTNITDVGHLTDDADDGEDKLLKRAKLEQLE-PME-----IADKYFWAYFDAMAKL 117 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P PRAT HI + I + Q ++ G AYE + FD S+ YG S R +D+ Sbjct: 118 GVRRPDITPRATGHITEQIAMTQTLLERGLAYERGGNVYFDVSAWETYGELSGRNVDDLV 177 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKV 230 GTR+ + K +P DF LWKR+ E G W SPWG G PGWHIECS MS+ YLG Sbjct: 178 EGTRIATRSDKDDPRDFALWKRA---EGGHLMRWPSPWGEGYPGWHIECSVMSTKYLGDA 234 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDLIFPHHE E+AQ+ A + A +W+H + LEG KM+KS G+F+T+ E Sbjct: 235 FDIHGGGLDLIFPHHECELAQAKAAGK--PFARVWLHFNMVTLEGEKMAKSKGHFVTLEE 292 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQT 340 L R + +R +L THYR DF+ ++RL E L++ + Sbjct: 293 LF-------RRFDPIAVRFHLLGTHYRSVSDFSEASLRASAQGLRRLREGYAALARAVED 345 Query: 341 STSKGIIDPA-----VLSALYNDLNTVSAIQALHKLARES----TKNHDLLPIF------ 385 + DP+ +A+ +DLNT A+ L+ RE+ + D + Sbjct: 346 GGDED-ADPSPYRERFEAAMNDDLNTAQALAVLYDALRETNAALARGADQATLRAAKRFF 404 Query: 386 -NASAHILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 +A+ +LGI + +S +E + +R + F++AD IR++L + G + Sbjct: 405 DDAAGGVLGILGGAAETQGDAELVSGLVELISAQRQEARLRRDFATADAIRERLAALGIV 464 Query: 442 LEDYKNPDNGQRMTRWKQ 459 LED PD RWK+ Sbjct: 465 LED--TPDG----VRWKR 476 >gi|256844496|ref|ZP_05549982.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] gi|293381071|ref|ZP_06627092.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 214-1] gi|312977950|ref|ZP_07789696.1| cysteine--tRNA ligase [Lactobacillus crispatus CTV-05] gi|256613574|gb|EEU18777.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] gi|290922371|gb|EFD99352.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 214-1] gi|310895257|gb|EFQ44325.1| cysteine--tRNA ligase [Lactobacillus crispatus CTV-05] Length = 477 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 177/503 (35%), Positives = 265/503 (52%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAENFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQS-EAKTGKKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSK 344 R V+R M YR I+++ + L +A +L ++ T S Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTLTNINYRLEDDTASEES 347 Query: 345 GIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------- 390 + A+++ A+ +D N +A+ A+ +DLLP+ NA+A+ Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAI----------YDLLPVVNANANAARADKQ 397 Query: 391 --------------ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + G++ +C ++ N I+ LV++R K ++++D IR Sbjct: 398 ELQKFKEKLASWLLVFGVDTNKLCVKNAGSN-DDEIDALVKKRDEARANKDWATSDQIRD 456 Query: 434 QLESKGFILEDYKNPDNGQRMTR 456 QL+ G ++D P G R TR Sbjct: 457 QLKEMGITIQD--TP-QGTRWTR 476 >gi|238853164|ref|ZP_04643551.1| cysteine--tRNA ligase [Lactobacillus gasseri 202-4] gi|238834218|gb|EEQ26468.1| cysteine--tRNA ligase [Lactobacillus gasseri 202-4] Length = 472 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 254/478 (53%), Gaps = 56/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRQKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 62 -VKYVSNFTDVDDKMINEARKEHTTV------GELADRYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIQEIIDFVQDLIDKGFAYEVDGDVYYRAKKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 175 EQSKKEDPIDFALWKAQKEDDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKKKEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDP 349 + V+R M YR PI+++ L +AE +L ++ T + ++ Sbjct: 289 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLMDEQETLED 346 Query: 350 AVL------------SALYNDLNTVSAIQALHKLAREST----KNHDLLPIFNASA---- 389 ++L A+ +D N +A+ ++ L KN P + Sbjct: 347 SILRDNLTQAKAEFIEAMDDDFNVQNALSIMYDLTSNLNTHLQKNQVDKPALKKAKKLLL 406 Query: 390 ---HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+ ++ + I + +V +R K K ++ +D +R +L++KG ++ED Sbjct: 407 AWLEIFGVSFNEKQTENDDEIEV--MVAKRDEARKNKNWAESDRLRDELQAKGIVIED 462 >gi|115378641|ref|ZP_01465792.1| cysteinyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] gi|115364353|gb|EAU63437.1| cysteinyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] Length = 458 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 245/464 (52%), Gaps = 68/464 (14%) Query: 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPS 89 +CGPTVY + HIGNAR FDV+ R LRY G + V YVRN TD+DDKII +A E Sbjct: 1 MCGPTVYSYIHIGNARTFTSFDVVVRYLRYR-GYR-VHYVRNYTDVDDKII-KAAHETGE 57 Query: 90 IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEAN 149 P+ + + + F DT L + P P+ + H+P+++ +I+ ++ G AYE+ Sbjct: 58 EPV-----ALAGRFVKIFQDDTRALHLVEPDVAPKVSEHLPEILRIIETLVAKGVAYESQ 112 Query: 150 NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 ++ F SS P Y S+RK+D+ G RV K+ P DF LWK + P EP W+SPWG Sbjct: 113 GDVYFSVSSYPEYAKLSKRKLDDLCAGERVQPGEQKREPLDFALWKAAKPGEPSWDSPWG 172 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 +GRPGWHIECSAMS+ YLG+ FDIHGG LDLIFPHHENEIAQS A + A W+H G Sbjct: 173 KGRPGWHIECSAMSAKYLGESFDIHGGALDLIFPHHENEIAQSEAASG-KPFAKYWMHCG 231 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 FL++EG KMSKS GN + + + L A +R L THYR P+ F+ + + + Sbjct: 232 FLDIEGAKMSKSLGNVVRLRDALTRVD-------AEALRFFFLSTHYRHPLHFSDKAIAD 284 Query: 330 AEILLSKWPQT-----------STSKGII--DPAVL-----SALYNDLNTVSAIQALHKL 371 +E L + +T +G + +P +A+ +D N A+ AL L Sbjct: 285 SEYRLEYFYETLRKVDERVGGKDFGQGPLHGEPGRFLQEFEAAMDDDFNCPGALGALSGL 344 Query: 372 ARESTKNHDLLPIFNAS----------------AHILGI--------------EVCKEHL 401 + D P+ + + + +LG+ KE Sbjct: 345 FGLMNELTDKPPVKDKALVGRTLQALRDTVRKVSSVLGLFEDDPTQWLLRRRDRAVKE-- 402 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I +A +E+L+ ER K K F+ AD +R +L+ +G + D Sbjct: 403 -RGIDVAQVERLLSERNEARKSKNFAEADRLRSELKGQGVEIMD 445 >gi|116629010|ref|YP_814182.1| cysteinyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|282852713|ref|ZP_06262055.1| cysteine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311111194|ref|ZP_07712591.1| cysteine--tRNA ligase [Lactobacillus gasseri MV-22] gi|122273992|sp|Q045X8|SYC_LACGA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116094592|gb|ABJ59744.1| cysteinyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|282556455|gb|EFB62075.1| cysteine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311066348|gb|EFQ46688.1| cysteine--tRNA ligase [Lactobacillus gasseri MV-22] Length = 472 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 254/478 (53%), Gaps = 56/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRQKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 62 -VKYVSNFTDVDDKMINEARKEHTTV------GELADRYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIQEIIDFVQDLIDKGFAYEVDGDVYYRAKKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 175 EQSKKEDPIDFALWKAQKDDDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQS-EAKTGKKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDP 349 + V+R M YR PI+++ L +AE +L ++ T + ++ Sbjct: 289 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLMDEQETLED 346 Query: 350 AVL------------SALYNDLNTVSAIQALHKLAREST----KNHDLLPIFNASA---- 389 ++L A+ +D N +A+ ++ L KN P + Sbjct: 347 SILRDNLTQAKAEFIEAMDDDFNVQNALSIMYDLTSNLNTHLQKNQVDKPALKKAKKLLL 406 Query: 390 ---HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+ ++ + I + +V +R K K ++ +D +R +L++KG ++ED Sbjct: 407 AWLEIFGVSFNEKQTENDDEIEV--MVAKRDEARKNKNWAESDRLRDELQAKGIVIED 462 >gi|325968781|ref|YP_004244973.1| cysteinyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28] gi|323707984|gb|ADY01471.1| cysteinyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28] Length = 503 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 180/475 (37%), Positives = 248/475 (52%), Gaps = 46/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNT+ + + + P R+YVCG T YD H+G+AR + +D+L R L Y E Sbjct: 24 IIVYNTVSKNLERITLLRPGLARIYVCGLTPYDSMHVGHARTFVFYDILRRYLEYLGVE- 82 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TDIDDKII +A+QE S IN + S+ ++F +L P+ Sbjct: 83 -VRFVTNFTDIDDKIINKAKQEFGSDLINRWYEV-PSRYIKEFFDAIDKLYVKRAYAYPK 140 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +I M+ IQ ++ AY + + + FD + +P YG FS +KI++ G RV + Sbjct: 141 VTENISDMLKWIQELVGKDLAYVSPDGSVYFDITKVPRYGEFSGQKIEDLIAGARVEPEP 200 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK + EP W SPW GRPGWH+EC MSS YLG FDIHGGG DLIFP Sbjct: 201 GKKNPLDFALWKSWSEGEPWWNSPWSPGRPGWHLECVVMSSKYLGVPFDIHGGGQDLIFP 260 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIA + I+ A WIH G + ++G+KMSKS GN I I ++L KK+ G Sbjct: 261 HHENEIAIARVYFGIDYFAKYWIHVGLVTIKGQKMSKSLGNIIPIMDVL--KKYDGE--- 315 Query: 304 APVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 V+RL M YR+P+DF ++ + A +L++ + G D +LS Sbjct: 316 --VLRLYYSMAQYRKPMDFDPDALDQVRNSLMSIYAAYDMLTEVINEAPDTGDEDNKLLS 373 Query: 354 -----------ALYNDLNTVSAIQALHKLARESTKN-------------HDLLPIFNASA 389 +L ND+NT A+ AL AR T + L F A Sbjct: 374 RVNDFVNSFEESLNNDINTSGAVAALMDFARYITSTVIYNTQHFSRTALMNALTAFTDLA 433 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +ILGI + + L +I IE L++ R L K F AD IR +L G ++ D Sbjct: 434 NILGI-LNRTRLPPSIISLIEALIRVRAQLRARKMFDLADEIRNELGRLGVVISD 487 >gi|254422183|ref|ZP_05035901.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7335] gi|196189672|gb|EDX84636.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7335] Length = 486 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 252/488 (51%), Gaps = 62/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F+ + P + MY CG TVYD+ H+G+AR IV+D + R L + Sbjct: 3 VVIYNTLSRQKEAFKPLSPEQVTMYCCGVTVYDYCHLGHARSYIVWDTIRRYLSWR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RARQE N ++ + + T + +D RL L Sbjct: 61 NVRYVQNFTDIDDKILNRARQE------NSSMEAVAKEYTTAYFEDMARLNILEADEYTY 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG--TRVPEK 182 AT+ I + LI + G+AY A ++ + YG S RK+D+ + G RV + Sbjct: 115 ATHTIDGIKRLIHQLEQKGYAYSAKGDVYYSVRKFEGYGKLSGRKLDDMEAGRSGRVGTQ 174 Query: 183 YH--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK + P EP WES WG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 ADSIKQDPFDFALWKSAKPDEPAWESTWGPGRPGWHIECSAMVRDRLGDTIDIHMGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + A W+HNG +N++G KMSKS GNF TI LL+ + Sbjct: 235 QFPHHENEIAQSEAATG-KPLATYWMHNGMVNVDGTKMSKSLGNFTTIRNLLDAE----- 288 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------WPQTSTS 343 + P P+ +R+ ++ + YR P+DFT + + A+ S W + + Sbjct: 289 AAPDPMAVRMFVMQSQYRMPLDFTEEAIVAAKKGWSTLNEGLNFGVRHGEDLGWAKAAAD 348 Query: 344 KGIIDPAVLSA-------LYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-------- 388 + +D +A + +D NT AI L LA+E + +++ A+ Sbjct: 349 EIAVDALDQAAVEQFRISMDDDFNTPGAIAVLFGLAKELQRQSNVIIHEGAADANPAELQ 408 Query: 389 ---------AHILGIEV-CKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 A +LG+E E ++ + IE L+ +R + K ++ +D IR +L+ Sbjct: 409 QQWQTLVTLAGVLGLEAQAIESVDAGVLSEAEIETLIAQRANAKQAKNYAESDRIRDELK 468 Query: 437 SKGFILED 444 ++G L D Sbjct: 469 AQGITLID 476 >gi|225620434|ref|YP_002721691.1| cysteinyl-tRNA synthetase [Brachyspira hyodysenteriae WA1] gi|254765180|sp|C0R1J9|SYC_BRAHW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|225215253|gb|ACN83987.1| cysteinyl-tRNA synthetase [Brachyspira hyodysenteriae WA1] Length = 474 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 178/497 (35%), Positives = 263/497 (52%), Gaps = 63/497 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR-YYY 61 K I YN+L R+ F+ I+ + + MY CGPTVY++AHIGN R I D+L R+L Y Y Sbjct: 2 KDIVFYNSLTREKEVFKPINANEVGMYSCGPTVYNYAHIGNFRAYIFSDLLRRVLEDYGY 61 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V V N+TD+DDK I+ +++ H I +ND T K + F +D L T Sbjct: 62 N---VKLVMNLTDVDDKTIKNSKENH--ISLND----YTKKYKEAFFEDIKTLGIKKATV 112 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM-----G 176 P AT+HI +MI +I+ + +GH YE++ + F S+ P YG + +D+Q++ G Sbjct: 113 NPAATDHIKEMINIIELLKKNGHTYESDGSVYFKISTFPQYGELAN--LDKQELLDGASG 170 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + ++Y K+N +DF+LWK T + W+SP+G+GRPGWHIECSAMS YLGK FDIH Sbjct: 171 RVLNDEYDKENASDFVLWKAYTEDDGDVYWDSPFGKGRPGWHIECSAMSCKYLGKHFDIH 230 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GG+D FPHHENEIAQ+ A EK N W+H L ++G KMSKS GNF T+ +LL+ Sbjct: 231 TGGVDNKFPHHENEIAQNEAAFN-EKFVNYWLHCEHLIVDGEKMSKSKGNFYTLRDLLD- 288 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGI 346 + IR +++ +HYR+ ++FT++ + +++ + + +T Sbjct: 289 -----KGLSPEAIRYSLINSHYRKQLNFTIEGIKQSQSAIDRVNDLIFRLKDINNTESNE 343 Query: 347 IDPAVLSAL-----------YNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 I+ +L L YNDLN A+ L L + + D + + A + IE Sbjct: 344 INENLLKELEVSNEKFSDSIYNDLNISEALGILFTLVKTVNTSFDSINVNTRDAILKFIE 403 Query: 396 VCKEHL------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + N I KL++ER I K K + AD IR QL S G + Sbjct: 404 RVNNIINCFNMGDTDKKSNNEDEDKINKLIEERTIAKKEKNYQKADEIRNQLLSMGIEIM 463 Query: 444 DYKNPDNGQRMTRWKQK 460 D + +WK+K Sbjct: 464 D------TPQGVKWKRK 474 >gi|300870684|ref|YP_003785555.1| cysteinyl tRNA-synthetase [Brachyspira pilosicoli 95/1000] gi|300688383|gb|ADK31054.1| cysteinyl tRNA-synthetase [Brachyspira pilosicoli 95/1000] Length = 469 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 178/491 (36%), Positives = 257/491 (52%), Gaps = 58/491 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR-YYYGE 63 IK YN+L R+ EF+ ++ + MY CGPTVY++AHIGN R I D++ R+L Y Y Sbjct: 2 IKFYNSLTRQKEEFKPMNEKEVGMYSCGPTVYNYAHIGNFRAYIFSDLVRRVLEDYGYN- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V V N+TD+DDK I +++ H S+ S T K F +D L T P Sbjct: 61 --VKLVMNLTDVDDKTIRNSKENHISL------SEYTKKYKDAFFEDIKTLRIKPATVNP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS---RRKIDEQKMGTRVP 180 AT HI +MI +I+ + +GH YEA+ I F S+ P YG + ++++ E G Sbjct: 113 SATEHINEMIDIIKLLEKNGHTYEADGSIYFKISTFPEYGELANLDKQELKEGASGRVSS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 ++Y K+N +DF+LWK T E G W+SP+G+GRPGWHIECSAMS YLGK FDIH GG Sbjct: 173 DEYDKENASDFVLWKAYTE-EDGDVYWDSPFGKGRPGWHIECSAMSCKYLGKHFDIHTGG 231 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +D FPHHENEIAQ+ A EK N W+H L ++G KMSKS GNF T+ +LL Sbjct: 232 VDNKFPHHENEIAQNEAAFN-EKFVNYWLHCEHLIVDGEKMSKSKGNFYTLRDLL----- 285 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTSTSKGIIDPAV 351 + A IR +++ +HYR+ ++FT++ + +++ + + + D AV Sbjct: 286 -NKGLSAEAIRYSLMNSHYRKQLNFTIEGINQSQSAIDRVNDLIFRLKDVNKTDADDSAV 344 Query: 352 LSAL-----------YNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH 400 + L Y+DLN A+ + + D + + + A I IE Sbjct: 345 MKELEEANKNFFESIYDDLNVSEALGVFFSFIKSINISFDSINVSSRDAIIKFIERVNNI 404 Query: 401 LN-----------KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +N + I KL++ER + K K + AD IR +L S G + D N Sbjct: 405 INCFNMNGEKEIESSEEEKINKLIEERTLAKKEKNYKRADEIRDELNSMGIEIMDTPNG- 463 Query: 450 NGQRMTRWKQK 460 RWK+K Sbjct: 464 -----VRWKRK 469 >gi|11498023|ref|NP_069247.1| cysteinyl-tRNA synthetase (cysS) [Archaeoglobus fulgidus DSM 4304] gi|3122884|sp|O29836|SYC_ARCFU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|2650218|gb|AAB90823.1| cysteinyl-tRNA synthetase (cysS) [Archaeoglobus fulgidus DSM 4304] Length = 467 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 179/489 (36%), Positives = 252/489 (51%), Gaps = 59/489 (12%) Query: 5 IKIYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++YNTL RKI + + I D ++MYVCG T YD++HIG+AR + FDV R L Y E Sbjct: 1 MEVYNTLSRKIEKLEDIVDGKRVKMYVCGITAYDYSHIGHARSAVFFDVFRRYLEYLGYE 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N TD+DDKII RA +E + + K ++++KD L PT+QP Sbjct: 61 --VVYVQNFTDVDDKIINRAVKEGKTQ------KEVAEKFIEEYLKDMEALNVKKPTYQP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + T HIP +I IQN+I G+AY + ++ F + +YG S++ ++E P++ Sbjct: 113 KVTEHIPDIIEFIQNLIEKGYAYVIDGDVYFHVPAFEHYGELSKQSLEELNRHRIEPDE- 171 Query: 184 HKKNPADFILWKRSTPM----EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK + + ++SPWGRGRPGWHIECS MS+ YLG FDIHGGG D Sbjct: 172 RKRDVKDFALWKSAKEADLKAQAVFDSPWGRGRPGWHIECSVMSAKYLGVPFDIHGGGKD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENE AQS +E IW+HN F+ ++G KMSKS GN + I ++L+ Sbjct: 232 LIFPHHENERAQSFARFGVE-PVKIWVHNDFIRIKGEKMSKSLGNIVRIRDVLQ------ 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----------------EILLSKWPQTSTS 343 + V+R +L HYR P+D+T + L A EI K Sbjct: 285 -RYEGEVLRYFLLTAHYRSPLDYTEEALERAKRAYEYLRSALINLDMEIAYLKTFGDRKE 343 Query: 344 KGIIDPA-----VLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASA 389 +D A+ DL+T AI LH+ A K+ +L F Sbjct: 344 GNQVDVEDYIRRFEEAMNRDLHTPDAIAVLHEFAGLINKSLYELSLNQAEELYEAFKRLC 403 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG+ E + EK+V ER K + F AD IR + +G L D P Sbjct: 404 GVLGLFEKMERVPALSREDAEKVV-ERERARKERNFELADAIRDEFAKRGIRLID--TP- 459 Query: 450 NGQRMTRWK 458 + TRW+ Sbjct: 460 ---KGTRWR 465 >gi|297816954|ref|XP_002876360.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322198|gb|EFH52619.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 485 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 177/489 (36%), Positives = 258/489 (52%), Gaps = 63/489 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K ++ +YNT+ + F+ I+P I MYVCG T YD++HIG+AR + FD+LYR LR+ Sbjct: 5 KPELTLYNTMTQLKEVFKPINPGKIGMYVCGITAYDYSHIGHARAAVSFDLLYRYLRHLG 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRN TD+DDK + + P++ ++++ ++++ D T L CL PT Sbjct: 65 YE--VHYVRNFTDVDDKAKKCGEK-----PLD-----LSNRFCEEYLLDMTALQCLIPTR 112 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPR ++H+ +I +I+ II +G Y ++ F P+YG S +++D + G RV Sbjct: 113 QPRVSDHMEHIIKMIEKIIENGCGYAVGGDVFFSVDKSPSYGQLSGQRLDHTQAGKRVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF LW + EP WESPWG GRPGWHIECSAMS+HYL FDIHGGG DL Sbjct: 173 DSRKRNPADFALWNAAKSGEPSWESPWGPGRPGWHIECSAMSAHYLSPRFDIHGGGADLK 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+C A + N W+HNG + KM KS NF TI E+ T K+ + Sbjct: 233 FPHHENEIAQTCAACE-DSGVNYWLHNGHVTNNNVKMGKSLDNFFTIREI--TAKYHPLA 289 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------------------------SK 336 +R ++ YR P++++V +L + L K Sbjct: 290 -----LRHFLMSAQYRSPLNYSVSQLESSSDALYCAYQTLEDLVKYLSPYREEMSGDVGK 344 Query: 337 WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-- 394 QT+ +K +I V +AL ++S ++ + K R S L+ + A +L + Sbjct: 345 TQQTAEAKEMIK-KVKNALKFINVSISKLKKIQKKQRMSLIV-SLVEVEKAVREVLDVLG 402 Query: 395 --------EVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 E KE K ++ A + + + ER + K K F +D IR+ L +KG Sbjct: 403 LLTTLSYDEFLKEMKQKALTRAGIGEEEVLRRIDERKLARKNKDFKRSDQIRELLAAKGI 462 Query: 441 ILEDYKNPD 449 LED D Sbjct: 463 ALEDIPGKD 471 >gi|113954599|ref|YP_730137.1| cysteinyl-tRNA synthetase [Synechococcus sp. CC9311] gi|113881950|gb|ABI46908.1| cysteinyl-tRNA synthetase [Synechococcus sp. CC9311] Length = 498 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 181/501 (36%), Positives = 249/501 (49%), Gaps = 78/501 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 ++ N+L + F+ ++P +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 4 LRFTNSLTSRTEAFEPLEPGKATIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWRGYD- 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY++N TDIDDKI+ RA +E ++ ++ +N + F D RL L Sbjct: 63 ---VTYIQNYTDIDDKILNRASEEGSTM------QAVSERNIEAFEIDMGRLNILPADRM 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TR 178 PRAT I + LI + G AY ++ ++ FD S +YG S R +EQ+ G T Sbjct: 114 PRATCCIEGIQTLIAELETKGAAYSSDGDVYFDISKAKDYGKLSGRDPNEQQQGASGRTA 173 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ KK+P DF LWK S EP W+SPWG GRPGWHIECSAM LG DIH GG Sbjct: 174 DGEESRKKHPFDFALWKGSKVGEPSWDSPWGPGRPGWHIECSAMVRQELGLTIDIHLGGG 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A+ A +W+HNG +N+ G KMSKS GNF TI LLE+ Sbjct: 234 DLVFPHHENEIAQSETANGA-PLARLWMHNGMVNVGGTKMSKSLGNFTTIRALLES---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQ----------------RLTEAEILLSKWPQ-TS 341 A +RL +L HYR+P+DFT + +L E +W T+ Sbjct: 289 --GLSAMALRLFVLQAHYRKPLDFTAEALEASTTGWKGLNAALKLGETHAAALEWSDHTA 346 Query: 342 TSKGIIDPA-------------VLSALYNDLNTVSAIQALHKLAR--------------- 373 S + +A+ +DLN+ A+ L +LAR Sbjct: 347 LSNAAVQAGRNAQGPFEDLEQRFTAAMDDDLNSSGALAVLFELARPLRGLANRLDRGDQP 406 Query: 374 -----ESTKNHDLLPIFNASAHILGI--EVCKEHLNKNISI---AIEKLVQERLILLKMK 423 E T+ H + A +LG+ E + ++N + AIE+ + R + K Sbjct: 407 EQPGEELTQLHSRWLLLRELAAVLGLRSETDESQPSENSGVDAQAIEQAIANRKAAKQEK 466 Query: 424 KFSSADYIRKQLESKGFILED 444 + AD IRK L +G L D Sbjct: 467 NYQEADRIRKSLSDQGIELID 487 >gi|88603422|ref|YP_503600.1| cysteinyl-tRNA synthetase [Methanospirillum hungatei JF-1] gi|88188884|gb|ABD41881.1| cysteinyl-tRNA synthetase [Methanospirillum hungatei JF-1] Length = 423 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 174/444 (39%), Positives = 246/444 (55%), Gaps = 32/444 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL R + FQ + P + ++VCGPTVY++ H+G+AR +VFDVL + LR+ E Sbjct: 1 MQLYSTLSRMVEPFQTLYPDRVSLFVCGPTVYNYPHLGHARTYVVFDVLAKYLRWTGQE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITD+DDKII RA++E I D + K ++++KD L + ++ R Sbjct: 60 -VLYIQNITDVDDKIINRAQEE--KISQKD----LARKFEREYIKDMLSLGIDSVSYHAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I I+ ++ G Y + F+ S P G S + D K +RV + Sbjct: 113 ATTHIPEIINQIERLVGIGVGYITETGVYFNIDSFPRNGELSGQSKD--KRISRVTDT-K 169 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NPADF+LWKR E W+SPWGRGRPGWHIE +A++ Y G+ +DIHGGGLDLIFPH Sbjct: 170 KHNPADFVLWKRGEYGEYTWDSPWGRGRPGWHIEDTAITEKYFGQQYDIHGGGLDLIFPH 229 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE EIAQ + W+H GFL +EG KMSKS GNFI I + L+T W Sbjct: 230 HEAEIAQMESLEGKHPMVRYWMHTGFLTVEGEKMSKSLGNFIKIQDALKT-------WDK 282 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----AVLSALYNDLN 360 +IR +L++HYR P+ + + L A+ L + + P A ++A+ +DLN Sbjct: 283 DIIRYFILLSHYRSPLQVSEEGLLNAKKALEHIRAIAITDNGPYPEGRDAFIAAMESDLN 342 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 T +AI A+H LA L ILGI E S + L R L Sbjct: 343 TPNAIAAIHALAAHGD-----LEALIEYGEILGIRFLPE-----TSAPLSILQDIRAELR 392 Query: 421 KMKKFSSADYIRKQLESKGFILED 444 K+F AD IRK++ G + D Sbjct: 393 ASKQFEIADMIRKKIADAGIQVTD 416 >gi|71892086|ref|YP_277816.1| cysteinyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|109894884|sp|Q493A1|SYC_BLOPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71796192|gb|AAZ40943.1| cysteinyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 473 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 187/482 (38%), Positives = 257/482 (53%), Gaps = 63/482 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL +K +F I+ I++YVCG TVYD H+G+AR IVFD + R LR+ + Sbjct: 2 LKIFNTLTKKKEKFIPINAGKIKIYVCGVTVYDLCHLGHARTFIVFDSVIRYLRHCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V+YVRNITDIDDKII+RA + N+ +T++ Q+ D L L P ++P+ Sbjct: 61 -VSYVRNITDIDDKIIKRAYEN------NETTQQLTNRMIQEMHLDLDALNILRPNYEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRR----KIDEQKMGTRV 179 T HI +I I +I HAY A N +I+F ++ NYG S + KI + + ++ Sbjct: 114 VTEHIDIIIKFICLLISKKHAYTAPNGDIMFSVETMHNYGVLSNKENPPKIHDNIL--KI 171 Query: 180 PEKYHKKNPADFILWKRST----PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 P KKNP DF+LWK++T EP W SPWG GRPGWHIECSAM+ G DIHG Sbjct: 172 PNI--KKNPMDFVLWKKTTYNNKLGEPCWSSPWGLGRPGWHIECSAMNYSIFGNQIDIHG 229 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHH+NEIAQS CA ANIW+H+G L L KMSKS NF TI ++L Sbjct: 230 GGSDLIFPHHDNEIAQSVCAHETS-YANIWMHSGLLLLNYEKMSKSLNNFFTIRDIL--- 285 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------PQTSTS 343 + + IR ++ HYR + + L A+ L + P + Sbjct: 286 ----KHYDPETIRFFLMSAHYRSQLKYNDNNLKNAQTSLKRLYIALRDTNPTIQPNGGDN 341 Query: 344 KG-IIDPAVLSALYNDLNTVSAIQAL----HKLARESTKNHDLLPIFNAS-----AHILG 393 +G +S + +D NT A L H+L K H LL A+ A+I+G Sbjct: 342 EGEYFISKFISKMNDDFNTPEAYSVLFDIAHRLNNLKIKGHSLLAQGMAATLKYLANIIG 401 Query: 394 I----------EVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + ++ +H NKN I+KL+Q R + K ++ AD IRK+L G L Sbjct: 402 LLHQNPEIFLKKITLKH-NKNRHFEKIQKLIQCREVARKNNQWELADSIRKKLTVMGITL 460 Query: 443 ED 444 ED Sbjct: 461 ED 462 >gi|307710644|ref|ZP_07647077.1| cysteinyl-tRNA synthetase [Streptococcus mitis SK564] gi|307618587|gb|EFN97730.1| cysteinyl-tRNA synthetase [Streptococcus mitis SK564] Length = 423 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 173/447 (38%), Positives = 241/447 (53%), Gaps = 43/447 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ H+GNAR + FD + R Y E V Y+ N TD+DDKII RA++E Sbjct: 1 MYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE--VAYISNFTDVDDKIINRAKEEG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + P + K F +D T L T PR + +I ++++I G AYE Sbjct: 59 IT-PQE-----VADKYIAAFREDVTALGVKRATCHPRVVEFMTDIIRFVEDLIEKGFAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEKYHKK-NPADFILWKRSTPMEPGW 204 + ++ F NY + + ++ EQ R E+ +K NP DF LWK + P E W Sbjct: 113 SQGDVYFRVEKSHNYAKLANKTLEDLEQGASGRTDEETARKENPVDFALWKAAKPGEISW 172 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-AN 263 SPWG GRPGWHIECS MS+ LG DIHGGG DL FPHH NEIAQS + KT AN Sbjct: 173 NSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTNEIAQSEA--KTGKTFAN 230 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNGF+N++ KMSKS GNFIT+++ L+T V+R HYR+PI+FT Sbjct: 231 YWMHNGFVNIDNVKMSKSLGNFITVHDALKT-------LDGQVLRFFFATQHYRKPINFT 283 Query: 324 VQRLTEAEILLSKWPQTSTS--KGIIDPAVL--------SALYNDLNTVSAIQALHKLAR 373 + + +AE L T G +D L +A+ D N+ + I + ++A+ Sbjct: 284 EKAVRDAETNLKYLKNTYEQPFTGTVDAQELQAFKDKFVAAMDEDFNSANGITVVFEMAK 343 Query: 374 E-STKNHDLLPIFNASAHIL---GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 ++ N+D + A A +L GI +E L+ IE L+Q+R + F++AD Sbjct: 344 WINSGNYD-TSVKQALADMLEVFGIVFVEEVLDAE----IESLIQKRQEARANRDFATAD 398 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTR 456 IR QL ++G L D K +G R TR Sbjct: 399 QIRDQLAAQGIKLLDTK---DGVRWTR 422 >gi|222100839|ref|YP_002535407.1| Cysteinyl-tRNA synthetase [Thermotoga neapolitana DSM 4359] gi|254781695|sp|B9KAQ8|SYC_THENN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221573229|gb|ACM24041.1| Cysteinyl-tRNA synthetase [Thermotoga neapolitana DSM 4359] Length = 460 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 170/467 (36%), Positives = 244/467 (52%), Gaps = 44/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I NTL K EF + P +RMYVCGPTVYD H+GNARP +VFDV R L Y G + Sbjct: 1 MRITNTLTGKKEEFVPLQPGVVRMYVCGPTVYDLIHVGNARPAVVFDVFRRYLEYR-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + V+N TDIDDKII +A Q + ++ ++ +D L PR Sbjct: 60 VIM-VQNFTDIDDKIINKANQ------LGVDPKMVADTFIAEYWRDAHALGIRPANFHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++ +I+ ++ G+AY+ + FD YG S+++I++ G RV Sbjct: 113 TTDFVDDIVEIIEKLVERGYAYQTKTGVYFDVRKFKKYGELSKKRIEDLIAGARVEVDET 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K P DF LWKR+ P EP W SPWG GRPGWHIEC+ MS LG+ FDIH GG DL+FPH Sbjct: 173 KNFPLDFSLWKRAKPGEPCWNSPWGEGRPGWHIECTVMSVKILGESFDIHAGGEDLVFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE AQ+ +I A W+HNG + G KMSKS GN T+ E + KK+G Sbjct: 233 HENEKAQAEALTGKI--FAKYWMHNGMVRFLGDKMSKSTGNIFTVREAV--KKYGRDG-- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA--------EIL-------LSKWPQTSTSKGIID 348 +R +L HYR P+DF+ L++ EIL ++ P+ +T Sbjct: 287 ---LRYMILSKHYRSPMDFSEDLLSDYSKAVRRVWEILRRYESNGVTGIPKRNTVYEEYV 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA----------SAHILGI-EVC 397 + AL +D NT A+ L +LA+ +K+ + NA +LG+ ++ Sbjct: 344 NRFVEALDDDFNTPVAVSILFELAKNLSKSMEEGDQENALLFYHLIRREFGPVLGLFDLN 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E + L++ R L K K++ +D+IR +L G IL D Sbjct: 404 EERREVAGESLLGILIEVRETLRKEKRYDLSDWIRDRLRENGIILRD 450 >gi|318042057|ref|ZP_07974013.1| cysteinyl-tRNA synthetase [Synechococcus sp. CB0101] Length = 489 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 159/394 (40%), Positives = 219/394 (55%), Gaps = 44/394 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ NTL R++ EF+ I+P + +Y CG TVYD H+G+AR I +DVL R L + Sbjct: 3 LKLTNTLTRRVEEFRPIEPGKVSIYCCGVTVYDLCHLGHARSYIAWDVLRRYL--IWSGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKI+ RA +E S+ ++ +N + FV D RL L PR Sbjct: 61 AVTFVQNYTDIDDKILNRAAEEGSSM------EAVSERNIEAFVADMARLNILPADRMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP-- 180 AT + + LI + G AY A+ ++ F YG S R +++QK RV Sbjct: 115 ATRSLDAIRALISELEAKGAAYSADGDVYFAVMKHAGYGKLSGRDLEQQKDNAAGRVASE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K++P DF LWK + P EP + SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EEARKQHPFDFALWKGTKPGEPSFPSPWGAGRPGWHIECSAMVREELGDTIDIHLGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A E A+ W+HNG +N+ G+KMSKS GNF TI LL+ Sbjct: 235 VFPHHENEIAQSEAATGKE-LAHYWLHNGMVNVGGQKMSKSLGNFTTIRALLD------- 286 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA----- 354 S +P+ +RL L HYR+P+DFT + L A + W + + G+ ++ Sbjct: 287 SGVSPMTLRLFTLQAHYRKPLDFTAEALDAAA---TGWKGLNAALGLAGEIGAASNRATE 343 Query: 355 ---------------LYNDLNTVSAIQALHKLAR 373 + +DLNT +A+ L +LA+ Sbjct: 344 LPSALAAARERFAAAMNDDLNTSAALAVLFELAK 377 >gi|229819277|ref|YP_002880803.1| cysteinyl-tRNA synthetase [Beutenbergia cavernae DSM 12333] gi|259511825|sp|C5BYT3|SYC_BEUC1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229565190|gb|ACQ79041.1| cysteinyl-tRNA synthetase [Beutenbergia cavernae DSM 12333] Length = 474 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 253/479 (52%), Gaps = 58/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y++ R + +F+ ++P + +Y+CG TV H+G+ R +I FDVL R LR + Sbjct: 3 LRLYDSATRAVRDFEPLEPGKVGIYLCGATVQGEPHVGHLRSVIAFDVLVRWLRRSGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT +RN+TDIDDKI+ A+ +P ++ + F + L PT++PR Sbjct: 62 -VTMIRNVTDIDDKIL--AKSAEAGVPW----WAWAYRHERAFSDAYDAVGNLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ +MI L+Q ++ G+AY + + FD S+ +YGS +R+K+ + M T E Sbjct: 115 ATGHVVEMIELMQRLVDRGNAYRGKDGNVWFDVRSLADYGSLTRQKL--ENMSTLEEESS 172 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF LWK P +P WE+P+GRGRPGWH+ECSAM+ YLG+ FDIHGGG+DL Sbjct: 173 DKADPHDFALWKGLKPGDPETASWETPFGRGRPGWHLECSAMAYRYLGETFDIHGGGIDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE AQS A A W+HN ++ G KMSKS GN++T E L GR Sbjct: 233 RFPHHENEQAQSHAAGY--GFARYWLHNAWVTAGGEKMSKSLGNYLTAAEAL------GR 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI-------LLSKWPQTSTSKG-------- 345 PA V+R A+ HYR ++FT L EA + +++ + + G Sbjct: 285 V-PAVVLRYALASVHYRSSVEFTEATLAEARVTWERIAGFVTRAAELTGPVGDDGAARLA 343 Query: 346 --IIDPAVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGI 394 ++ A + A+ +DLN +A+ LH+ R E+ L +LG+ Sbjct: 344 DVVLPIAFVEAMDDDLNVSAALAVLHEHIRLGNTALSSGEAGDAAAELSAVRGMLDVLGL 403 Query: 395 ---------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + + +E ++ +R K ++ AD +R QL + G ++ED Sbjct: 404 DPLAEPWVGEASATPLRGAVDVLVEGVLADRSAARAAKDWARADALRDQLAAAGVVVED 462 >gi|289705924|ref|ZP_06502301.1| cysteine--tRNA ligase [Micrococcus luteus SK58] gi|289557352|gb|EFD50666.1| cysteine--tRNA ligase [Micrococcus luteus SK58] Length = 485 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 249/483 (51%), Gaps = 56/483 (11%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 + Y+T +I +F+ + P +Y CG TV H+G+ R IVFD+L R L G + Sbjct: 4 RFYDTRTAQIRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDILIRWLEAT-GLR- 61 Query: 66 VTYVRNITDIDDKIIERARQEHPS-------IPINDAISIITSKNTQQFVKDTTRLACLA 118 VT VRN+TDIDDKI++R+ H + P + + + + F L Sbjct: 62 VTSVRNVTDIDDKILDRSAASHEAGFEASDLYPAREPWWALAYRFEKAFDAAYLALGVRR 121 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKM 175 PT++PRAT H+P+M LI+ ++ GHAY A + ++ FD S YG +R+++++ + Sbjct: 122 PTYEPRATGHVPEMFALIERLMERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQD 181 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + K++P DF LWK + P EP WESPWG GRPGWH+ECSAMS+ YLG FD Sbjct: 182 APDA-DPRGKRDPRDFALWKGAKPGEPATAVWESPWGAGRPGWHLECSAMSTKYLGAEFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGGLDL FPHHENE+AQS A + A W+HNG + G KMSKS GN I+ E+L Sbjct: 241 IHGGGLDLRFPHHENELAQSTAAG--DGFARFWLHNGLVTYGGEKMSKSVGNTISPEEML 298 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGIIDP 349 G + P +R + HYR +D+ L EAE + + + + + G + P Sbjct: 299 ------GMARPT-AVRYFLGQAHYRSQLDYRPGALDEAEAAVERIEGFTARARAAGAVPP 351 Query: 350 ------------AVLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNAS 388 A +A+ +DLN A+ ALH+ R L A Sbjct: 352 APDGALADRVPAAFRTAMEDDLNVPQALAALHEAVRAGNSALAGQDLDAAAARLAEVEAM 411 Query: 389 AHILGIEVCKEHLNKN---ISIAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFI 441 +LG++ E + +S A++ LV + R K +++AD IR L + G + Sbjct: 412 TAVLGLDDVPEGDDAAAGPVSDALDSLVRSQIEARAQARADKDWATADRIRDALAAAGVV 471 Query: 442 LED 444 LED Sbjct: 472 LED 474 >gi|320009404|gb|ADW04254.1| cysteinyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331] Length = 466 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 247/470 (52%), Gaps = 48/470 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++++T R+I +F + + +Y+CG TV HIG+ R + FD++ R Y + Sbjct: 3 IRLHDTNARQIRDFVPLTAGCVSIYLCGATVQAAPHIGHIRSGLNFDIMRRWFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKII++A ++ N I +N + F L CL PT++PR Sbjct: 62 -VTFIRNVTDIDDKIIKKAAEQ------NRPWWSIGYENERAFNDGYDVLGCLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +++ +I GHAYEA+ + FD S Y S + +D+ + + E Sbjct: 115 ATGHITEMIEMMRGLIERGHAYEADGNVYFDVRSYEGYLELSNQDLDDLRQPSGDNET-G 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DLIFPH Sbjct: 174 KRDKRDFAMWKSAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGSAFDIHGGGIDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HNG++ L G KMSKS N + +++++ + W Sbjct: 234 HENEIAQAKAFG--DDFAKYWVHNGWVTLSGEKMSKSLDNSVLVSDMV-------KQWRP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI-----------LLSKWPQTSTSKGIIDPAVLS 353 V+R + HYR I+++ + L EAE ++ K + + PA Sbjct: 285 IVLRYYLGTPHYRSMIEYSEEALREAESAFARIEGFVQRVVEKAGGPVEAAAEVPPAFAE 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVCKEH---- 400 A+ +DL A+ +H R+ L A +LG++ H Sbjct: 345 AMDDDLGVPQALAIIHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPLDPHWAGE 404 Query: 401 ------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++ +R + K + +AD IR QL G ++ED Sbjct: 405 SDRGEDLHGVVDTLVRLVLDQRQSARERKDWPAADAIRDQLNQSGLVIED 454 >gi|333026131|ref|ZP_08454195.1| putative cysteinyl-tRNA synthetase [Streptomyces sp. Tu6071] gi|332745983|gb|EGJ76424.1| putative cysteinyl-tRNA synthetase [Streptomyces sp. Tu6071] Length = 466 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 245/477 (51%), Gaps = 62/477 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTRARQIRDFFPLVPGCVSIYLCGATVQGAPHIGHIRSGLDFDIMRRWFTYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VVFVRNVTDIDDKIINKSAEQGRPWWAIG-------YENERAFNAAYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +MI +++ +I GHAYE+ + FD S P Y S +++D + E Sbjct: 114 RATGHITEMIEMMRTLIARGHAYESGGNVYFDVRSFPGYLELSHQELDNLLQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FD+HGGGLDLIFP Sbjct: 173 GKRDSRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGAAFDVHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQSKAYG--DEFAKYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KRWR 283 Query: 304 APVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTSKGI 346 V+R + HYR I+++ VQR+TE L+ ++ Sbjct: 284 PIVLRYYLATPHYRSMIEYSEEAVAEAESAFGRIEGFVQRVTE----LNGGEVAPAAE-- 337 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVC 397 + PA A+ +DL A+ LH R+ L A +LG++ Sbjct: 338 VPPAFAEAMDDDLGVPQAVAVLHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPL 397 Query: 398 ----------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++++R K + +AD IR QL G +ED Sbjct: 398 DPQWATGGEQAEDLHGVVDTLVRLVLKQREDARARKDWPAADAIRDQLAQSGLAIED 454 >gi|91204303|emb|CAJ71956.1| strongly similar to cysteinyl-tRNA synthetase [Candidatus Kuenenia stuttgartiensis] Length = 492 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 179/512 (34%), Positives = 261/512 (50%), Gaps = 78/512 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K YN++ +K F+ + ++ MYVCGPTVYD HIG+A+ + +DV+ R LRY + Sbjct: 3 LKFYNSITKKKEVFKPLVEGHVNMYVCGPTVYDHPHIGHAKSYVSYDVIVRYLRYLGYKV 62 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 C YV+NITD+ DDKI+ RA++E P +++ T+ + +D L Sbjct: 63 C--YVQNITDVGHLTDNADAGDDKILARAQRERIE-P-----AVLVEIYTRSYFEDMDAL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P PRAT HIP+ I LI+ +I G+AY +N + F+ S YG S RK ++ + Sbjct: 115 NNLRPDISPRATAHIPEQIELIEKLISKGYAYVSNGSVYFEVSKYREYGKLSGRKQEDLE 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G R+ K+NP DF LWK++ P W+SPWG G PGWH+ECSAMS YLG+ DI Sbjct: 175 AGARIEINLEKRNPNDFALWKKAEPAHIMRWKSPWGEGFPGWHLECSAMSMKYLGESLDI 234 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG++ +FPHHE EIAQS A+ + WIHN + + G+KM KS GNF+T+ + Sbjct: 235 HGGGIENMFPHHECEIAQSEAANDM-TFVRYWIHNNMVTVNGQKMGKSLGNFVTLKDAF- 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDPAV- 351 + + IR +L THYR P+DF+ + L A+ L + T + ID A Sbjct: 293 ------KKYHPLTIRFFILSTHYRSPLDFSNEALDAADKGLKRLFNTIKRVRRQIDEAAN 346 Query: 352 ------------------LSALYNDLNTVSAIQALHKLARESTK------------NHDL 381 L+A+ D+NT AI AL L++E D+ Sbjct: 347 GETTVLVYEKLEEHKKAFLNAMDEDINTSGAIAALFDLSKEVNALLDSGEEVSKKCMEDI 406 Query: 382 LPIFNASAH-ILGIEVCKEHLNKNISIAIEK------------LVQERLILLKMKKFSSA 428 ++ ILGI ++ + +I + L+ R L K K F + Sbjct: 407 NSLYQELGDGILGIVPVRKEVKADIEDDFSEGDKSVLKEVMGVLIDTRNQLRKEKLFQLS 466 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 D+IR +L G LED Q +T WK++ Sbjct: 467 DFIRNKLTEIGITLED------TQDVTLWKKR 492 >gi|15383990|gb|AAK96068.1|AF393466_2 cysteinyl-tRNA synthetase [uncultured crenarchaeote 74A4] Length = 462 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 176/450 (39%), Positives = 245/450 (54%), Gaps = 51/450 (11%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I++Y+CG TVYD +HIG+AR +IVFDVL + L E V +V+N TD+DDKII RA + Sbjct: 20 IKIYLCGVTVYDESHIGHARTIIVFDVLRKYLESKKVE--VDFVQNFTDVDDKIINRATK 77 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E N I+SK + + +D L T+ P+AT HI +I I+ +I A Sbjct: 78 E------NVTAEEISSKYIENYFRDFEELNVKRATNYPKATEHIEDIIEFIKKLIDKEIA 131 Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 Y N + F S YG S++KIDE + G+R+ KK+PADF +WK S + P WE Sbjct: 132 YVTKNGVYFAVSKFSEYGKLSKKKIDELQSGSRIQIDETKKDPADFAVWKFS-DINPTWE 190 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 SPWG+GRPGWHIECS MS YLG+ FDIHGGG DLIFPHHENEIAQS + A IW Sbjct: 191 SPWGKGRPGWHIECSVMSLKYLGENFDIHGGGRDLIFPHHENEIAQSEACTNL-PFAKIW 249 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G + + G KMSKS GN +I ++LE +W +IRL L HY + ID++ Sbjct: 250 MHVGMVTISGEKMSKSLGNTKSIKQVLE-------NWGPNIIRLFCLSGHYSKVIDYSED 302 Query: 326 RLTEAEILLSKWPQTST----------------SKGI--IDPAVLSALYNDLNTVSAIQA 367 L E L+KW Q T S+ + I +L +D NT A+ A Sbjct: 303 MLKEN---LTKWRQVETCYFELIHANNKNQENVSENVQKIGIEFDKSLEDDFNTHLALSA 359 Query: 368 LHKLARESTK----------NHDLLPI-FNASAHILGIEVCKEHLNKNISIAIEKLVQER 416 +L +E+ + N ++ F + ILG+ + + +++N I++L+ R Sbjct: 360 FFQLVKETNRLAAAEKLGKENGAIIKKEFKRISAILGLTIPE--MSQNKIQEIDELILNR 417 Query: 417 LILLKMKKFSSADYIRKQLESKGFILEDYK 446 + K+F AD IR +L L D+K Sbjct: 418 EKFREEKQFDKADKIRDELNKMNIELIDHK 447 >gi|302520121|ref|ZP_07272463.1| cysteinyl-tRNA synthetase [Streptomyces sp. SPB78] gi|302429016|gb|EFL00832.1| cysteinyl-tRNA synthetase [Streptomyces sp. SPB78] Length = 466 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 245/477 (51%), Gaps = 62/477 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTRARQIRDFFPLVPGCVSIYLCGATVQGAPHIGHIRSGLDFDIMRRWFTYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VVFVRNVTDIDDKIINKSAEQGRPWWAIG-------YENERAFNAAYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +MI +++ +I GHAYE+ + FD S P Y S +++D + E Sbjct: 114 RATGHITEMIEMMRTLIARGHAYESGGNVYFDVRSFPGYLELSHQELDNLLQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FD+HGGGLDLIFP Sbjct: 173 GKRDSRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGAAFDVHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQSKAYG--DEFAKYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KRWR 283 Query: 304 APVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTSKGI 346 V+R + HYR I+++ VQR+TE L+ ++ Sbjct: 284 PIVLRYYLATPHYRSMIEYSEEAVAEAESAFGRVEGFVQRVTE----LNGGEVAPAAE-- 337 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVC 397 + PA A+ +DL A+ LH R+ L A +LG++ Sbjct: 338 VPPAFAEAMDDDLGVPQAVAVLHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPL 397 Query: 398 ----------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++++R K + +AD IR QL G +ED Sbjct: 398 DPQWATGGEQAEDLHGVVDTLVRLVLKQREDARARKDWPAADAIRDQLAQSGLAIED 454 >gi|261252446|ref|ZP_05945019.1| cysteinyl-tRNA synthetase [Vibrio orientalis CIP 102891] gi|260935837|gb|EEX91826.1| cysteinyl-tRNA synthetase [Vibrio orientalis CIP 102891] Length = 436 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/458 (37%), Positives = 244/458 (53%), Gaps = 47/458 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T+YD HIG+ R + FDV+ R LRY + +T+VRNITDIDDKII+RA + Sbjct: 1 MYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD--LTFVRNITDIDDKIIKRANENG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 S +T + + D L P +PRAT +I ++I L++ +I G AY Sbjct: 59 ESC------DSLTERLIGEMHADFDALNMKRPDVEPRATEYIKEIIELVETLIERGFAYV 112 Query: 148 ANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A+N +++F+ + YG S + +++ + G RV + K++ DF+LWK S P EP WES Sbjct: 113 ADNGDVMFEIAKYDEYGKLSGQDLEQLQAGARVEIESAKRSSLDFVLWKMSKPGEPTWES 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAM+S LG FDIHGGG DL FPHHENEIAQSCCA + N W+ Sbjct: 173 PWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFPHHENEIAQSCCAHGTQYV-NTWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H+G + ++ KMSKS GNF TI ++L + A +R ++ HYR ++++ Sbjct: 232 HSGMVMVDREKMSKSLGNFFTIRDVL-------GHYDAETVRYFLMSGHYRSQLNYSEDN 284 Query: 327 LTEAEILLSKWPQTSTSKGIIDPAVLS---------ALYNDLNTVSAIQALHKLARE--S 375 L +A L + + + AV A+ +D NT A L +ARE Sbjct: 285 LNQARSALERLYTSLRGLDLTVSAVGGEEYVARFNDAMNDDFNTPEAYSVLFDMAREINR 344 Query: 376 TKNHDLLPIFNAS------AHILGI------EVCKEHLNKNISIA-IEKLVQERLILLKM 422 K D+ + A ++GI K + +A IE L++ R Sbjct: 345 LKAEDVAAASSLGVTMRQLADVIGILHQDPEAFLKGDAGNDDEVAEIEALIKLRNDSRAS 404 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K +++AD R +L G +LED G T W++K Sbjct: 405 KDWANADMARDKLTEMGIVLED------GPEGTTWRRK 436 >gi|15643482|ref|NP_228528.1| cysteinyl-tRNA synthetase [Thermotoga maritima MSB8] gi|6831684|sp|Q9WZH8|SYC_THEMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|4981244|gb|AAD35801.1|AE001743_3 cysteinyl-tRNA synthetase [Thermotoga maritima MSB8] Length = 460 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 169/467 (36%), Positives = 245/467 (52%), Gaps = 44/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I NTL K EF I P +RMYVCGPTVYD H+GNARP +VFDV R L Y G + Sbjct: 1 MRITNTLTGKKEEFVPIQPGVVRMYVCGPTVYDLIHVGNARPALVFDVFRRYLEYR-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + V+N TDIDDKII +A Q + + ++ +D L PR Sbjct: 60 VIM-VQNFTDIDDKIINKANQ------LGVDYKTVADTFIAEYWRDAHALGIRPANFHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++ +I+ ++ G AY+ + FD YG S++KI++ G RV Sbjct: 113 TTDFVEDIVEIIEKLVEKGFAYQTETGVYFDVRKFEKYGELSKKKIEDLIAGARVEVDET 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK++ P EP W+SPWG GRPGWHIEC+ MS LG+ FDIH GG DL+FPH Sbjct: 173 KKSPLDFSLWKKAKPGEPCWKSPWGEGRPGWHIECTVMSVKILGESFDIHAGGEDLVFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE AQ+ ++ A W+HNG + G KMSKS GN T+ E + K++G Sbjct: 233 HENEKAQAEALTGKV--FARYWMHNGMVRFLGDKMSKSTGNIFTVREAV--KRYGRDG-- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAV----------- 351 +R +L HYR P+DF+ + L + + + W + D + Sbjct: 287 ---LRYMILSKHYRSPMDFSEELLQDYSRAVKRVWEILGRYEKSGDIGIPKRNAVYEEYV 343 Query: 352 ---LSALYNDLNTVSAIQALHKLARESTKNHD-------LL---PIFNASAHILGI-EVC 397 + AL +D NT A+ + +LAR +K D LL I +LG+ ++ Sbjct: 344 NRFVEALDDDFNTPVAVSLIFELARNLSKAMDDNDREDALLYYHLIRREFGPVLGLFDLN 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E + ++ L++ R +L K K++ +D IR +L G IL+D Sbjct: 404 EEKKEVSSEELLKLLIEVRDVLRKEKRYDLSDRIRDRLREIGIILKD 450 >gi|239916923|ref|YP_002956481.1| cysteinyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|281414621|ref|ZP_06246363.1| cysteinyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|259511838|sp|C5C8X5|SYC_MICLC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239838130|gb|ACS29927.1| cysteinyl-tRNA synthetase [Micrococcus luteus NCTC 2665] Length = 485 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 250/483 (51%), Gaps = 56/483 (11%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 + Y+T +I +F+ + P +Y CG TV H+G+ R IVFD+L R L G + Sbjct: 4 RFYDTRTAQIRDFEPLVPGEASVYYCGATVQGMPHVGHVRSAIVFDILIRWLEAT-GLR- 61 Query: 66 VTYVRNITDIDDKIIERARQEHPS-------IPINDAISIITSKNTQQFVKDTTRLACLA 118 VT VRN+TDIDDKI++R+ H + P + + + + F L Sbjct: 62 VTSVRNVTDIDDKILDRSAASHEAGFEASDLYPAREPWWALAYRFEKAFDAAYLALGVRR 121 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKM 175 PT++PRAT H+P+M LI+ ++ GHAY A + ++ FD S YG +R+++++ + Sbjct: 122 PTYEPRATGHVPEMFALIERLMERGHAYPAQDGSGDVYFDVRSWERYGELTRQRVEDMQD 181 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + K++P DF LWK + P EP WESPWG GRPGWH+ECSAMS+ YLG FD Sbjct: 182 APDA-DPRGKRDPHDFALWKGAKPGEPATAVWESPWGAGRPGWHLECSAMSTKYLGAEFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGGLDL FPHHENE+AQS A + A W+HNG + G KMSKS GN I+ E+L Sbjct: 241 IHGGGLDLRFPHHENELAQSAAAG--DGFARFWLHNGLVTYGGEKMSKSVGNTISPEEML 298 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGIIDP 349 G + P +R + HYR +D+ L EAE ++ + + + + G + P Sbjct: 299 ------GMARPT-AVRYFLGQAHYRSQLDYRPGALDEAEAVVERIEGFTARARAAGAVPP 351 Query: 350 ------------AVLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNAS 388 A +A+ +DLN A+ ALH+ R L A Sbjct: 352 APDGALADRVPAAFRTAMEDDLNVPQALAALHEAVRAGNSALAGQDLDAAAARLAEVEAM 411 Query: 389 AHILGIEVCKEHLNKN---ISIAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFI 441 +LG++ E + +S A++ LV + R K +++AD IR L + G + Sbjct: 412 TAVLGLDDVPEGDDAAAGPVSDALDSLVRSQIEARAQARADKDWATADRIRDALAAAGVV 471 Query: 442 LED 444 +ED Sbjct: 472 VED 474 >gi|261350960|ref|ZP_05976377.1| cysteine--tRNA ligase [Methanobrevibacter smithii DSM 2374] gi|288860300|gb|EFC92598.1| cysteine--tRNA ligase [Methanobrevibacter smithii DSM 2374] Length = 448 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/466 (36%), Positives = 242/466 (51%), Gaps = 44/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+TL R F+ ++ + I ++VCGPTVYD AHIG+ R I FD + R + Y Sbjct: 1 MEIYSTLTRSKETFETMNDNRINLFVCGPTVYDDAHIGHGRTYISFDTIKRY--WEYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITD+DDKII+R+++ IP D I K +++++D +L R Sbjct: 59 TVFYIQNITDVDDKIIKRSKE--TGIPAGD----IARKFEKRYIEDMNKLNVTGVNLFAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+ ++I IQ +I G AYE + + F + +G S R I+E + + K Sbjct: 113 ATDHMGEIIDQIQRLIDKGFAYETEDGVYFGIDNFEEFGKLSNRNIEELESHREIA-KTT 171 Query: 185 KKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK R EP W SPWG GRPGWHIE +A++ +Y G +D+HGGGLDLIFP Sbjct: 172 KKNPIDFALWKKRENVDEPVWNSPWGEGRPGWHIEDTAITEYYFGPQYDVHGGGLDLIFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE EI Q W+H GFLN+ G KMSKS NFITI ELL + + Sbjct: 232 HHEAEITQMEAVSGKSPMVRYWLHTGFLNVSGEKMSKSLNNFITIRELL-------KEYD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------------KGIID 348 A V R +L THYR PIDF+ + L ++E L K + S I Sbjct: 285 ADVFRFFVLSTHYRSPIDFSKESLHQSEKSLDKIKKYYESLECEIIENVTSDYAPLKIAK 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP---------IFNASAHILGIEVCKE 399 ++ +D NT AI A+ L +S D L + ILGI+ + Sbjct: 345 EEFFKSMDDDFNTPKAIAAIFGLINDSKSEIDSLADEDVFAVREFLDDVGFILGIDF--D 402 Query: 400 HLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGFILED 444 + S + L+ + R L K++ +D IR QL G+ + D Sbjct: 403 LKDSGSSDELLTLISDVRQELRNNKQYELSDKIRNQLTDLGYEISD 448 >gi|254796714|ref|YP_003081550.1| cysteinyl-tRNA synthetase [Neorickettsia risticii str. Illinois] gi|254589939|gb|ACT69301.1| cysteinyl-tRNA synthetase [Neorickettsia risticii str. Illinois] Length = 484 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/320 (46%), Positives = 194/320 (60%), Gaps = 16/320 (5%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVYD HIGN R IV+D++YR+L + E V YVRNITD+DDKII A + Sbjct: 1 MYVCGPTVYDVPHIGNIRASIVYDIVYRVLLKLFPE--VVYVRNITDVDDKIITSASAQG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 D I++ + + F + L CL+PT +P+AT I +MI +IQ +I G+AY Sbjct: 59 VRC---DEIAL---RYERIFHEHLDLLNCLSPTVEPKATQSIGRMISMIQALIDRGNAYS 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + FD S YG S+RK ++ G RV E +KK+P DF+LWK + W SP Sbjct: 113 VAGNVYFDVGSFAEYGVLSKRKKEQLVYGVRVEEDVNKKHPGDFVLWKSDDHVY--WPSP 170 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ LG FDIHGGG DL FPHHENE AQS CA+ K A WIH Sbjct: 171 WGKGRPGWHIECSAMTLATLGADFDIHGGGADLKFPHHENERAQSMCANPGSKFARYWIH 230 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NGFL ++G KMSKS GN + ++ L+E+ VIR ++ THY +P+D+ + Sbjct: 231 NGFLTVKGEKMSKSLGNVVNVDTLVES------GVTPNVIRFVLISTHYSKPLDWNDAMV 284 Query: 328 TEAEILLSKWPQTSTSKGII 347 EA L K+ G++ Sbjct: 285 GEAVNSLMKFKLALLDSGVL 304 >gi|302530720|ref|ZP_07283062.1| cysteinyl-tRNA synthetase [Streptomyces sp. AA4] gi|302439615|gb|EFL11431.1| cysteinyl-tRNA synthetase [Streptomyces sp. AA4] Length = 461 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 243/469 (51%), Gaps = 45/469 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T R EF + +YVCG TV HIG+ R M+ +DVL R L + Sbjct: 3 LHLYDTATRAPREFTPVRSGTASIYVCGATVQGVPHIGHVRGMLNYDVLRRWL--LHSGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V VRN+TDIDDKI+ +A P + + + + F K L CL P+ PR Sbjct: 61 DVLLVRNVTDIDDKILTKAADA--GRPWWE----WAATHERAFEKAYEDLGCLPPSVTPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ QM+ L++ +I GHAY + ++ F S P YG+ S +++DE + G P + Sbjct: 115 ATGHVTQMVQLMERLIEAGHAYAVDGDVYFSVKSFPEYGALSGQQLDEVQQG-ETPTR-G 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P EP W +PWG GRPGWH+ECSAM+++YLG FDIHGGG+DL+FPH Sbjct: 173 KRDSRDFTLWKSAKPGEPSWPTPWGDGRPGWHLECSAMATNYLGAEFDIHGGGVDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS A + A W+HN ++ + G KMSKS GN ++I +LE + A Sbjct: 233 HENERAQSNAAG--DGFARYWLHNAWVTMSGEKMSKSLGNTVSIPAMLERYR-------A 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQT-STSKGIIDPAVLSALY 356 P +R ++ HYR ++++ ++EA E L + + G + +A+ Sbjct: 284 PELRYYLVQPHYRSTVEYSDGAVSEAAQGYRRIEAFLRRAESAGAVPVGEVAAEFAAAMD 343 Query: 357 NDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIEVCKEH------- 400 +DL T +A +H R ++TK +L +LG++ Sbjct: 344 DDLATPAAFAVVHNTVRDGNAALDSGDTTKALELAGTVRGMTGVLGLDPLSPDWADGGSD 403 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + +E L+ ER K F+ AD R +L + G +ED N Sbjct: 404 TPVRDALGTLVEALLAERQEARAAKDFARADAARDRLVAAGIAVEDTPN 452 >gi|293375371|ref|ZP_06621652.1| cysteine--tRNA ligase [Turicibacter sanguinis PC909] gi|292645924|gb|EFF63953.1| cysteine--tRNA ligase [Turicibacter sanguinis PC909] Length = 446 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 248/465 (53%), Gaps = 59/465 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNT R+ EF+ I+ + +RMY+CGPTVY++ HIGNARP++ FD+++R +Y E V Sbjct: 3 IYNTYTREKEEFRPIEENKVRMYICGPTVYNYIHIGNARPVLFFDLVHRYFKYLGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +V N+TD+DDKII RA +E + + I+ K F++ L L T P+ T Sbjct: 61 EFVSNVTDVDDKIINRAIEEGVTE------AQISEKYLNYFLECNKALNALPLTAMPKVT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 + MI I ++ AY + ++ F + YG S +KIDE ++G R+ E K+ Sbjct: 115 ESMDSMIEFINQLVERDFAYAVDGDVYFRIDKVREYGQLSGKKIDELEVGARIAEDSKKE 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHH 245 NP DF+LWK+ T W+SPWG GRPGWH EC M ++ + GK+ DIHGGG DL FPHH Sbjct: 175 NPLDFVLWKK-TDKGITWDSPWGAGRPGWHTECVVMINNQFHGKI-DIHGGGTDLQFPHH 232 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS C AN W+H G L L KMSKS GN I + +L+E A Sbjct: 233 ENEIAQSLCMYE-HNIANYWMHVGRLGLNNEKMSKSIGNVINVKDLIE-------QIDAN 284 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID--PAV-- 351 RL ML HYR+PI++T + + ++ + +W + ++ G +D P+V Sbjct: 285 AFRLFMLSVHYRQPINYTEENI---QLAVKEWQKVKSTYDQLHLKLDLAGALDVEPSVVP 341 Query: 352 ---------LSALYNDLNTVSAIQALHKLARESTK----------NHDLLPIFNASAHIL 392 + AL +D NT +AI +L+ + +E K N L +I Sbjct: 342 EIEALMNQFVEALEDDFNTANAIASLYGVIKEINKMVRAKASDEANRYALMTLQNMTYIF 401 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 G ++ K+ L ++ + R K K F+ AD +R +L++ Sbjct: 402 GFDLNKKRLTDEERELMQAWEEAR----KAKDFAKADELRGKLQA 442 >gi|222444492|ref|ZP_03607007.1| hypothetical protein METSMIALI_00104 [Methanobrevibacter smithii DSM 2375] gi|222434057|gb|EEE41222.1| hypothetical protein METSMIALI_00104 [Methanobrevibacter smithii DSM 2375] Length = 448 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/467 (36%), Positives = 241/467 (51%), Gaps = 46/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+TL R F+ ++ + I ++VCGPTVYD AHIG+ R I FD + R + Y Sbjct: 1 MEIYSTLTRSKETFETMNDNRINLFVCGPTVYDDAHIGHGRTYISFDTIKRY--WEYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITD+DDKII+R+++ IP D I K +++++D +L R Sbjct: 59 TVFYIQNITDVDDKIIKRSKE--TGIPAGD----IARKFEKRYIEDMNKLNVTGVNLFAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+ ++I IQ +I G AYE + + F + +G S R I+E + + K Sbjct: 113 ATDHMGEIIDQIQRLIDKGFAYETEDGVYFGIDNFEEFGKLSNRNIEELESHREIA-KTT 171 Query: 185 KKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK R EP W SPWG GRPGWHIE +A++ +Y G +D+HGGGLDLIFP Sbjct: 172 KKNPIDFALWKKRENVDEPVWNSPWGEGRPGWHIEDTAITEYYFGPQYDVHGGGLDLIFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE EI Q W+H GFLN+ G KMSKS NFITI ELL + + Sbjct: 232 HHEAEITQMEAVSGKSPMVRYWLHTGFLNVSGEKMSKSLNNFITIRELL-------KEYD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------------KGIID 348 A V R +L THYR PIDF+ + L ++E L K + S I Sbjct: 285 ADVFRFFVLSTHYRSPIDFSKESLHQSEKSLDKIKKYYESLECEIIENVTSDYAPLKIAK 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP---------IFNASAHILGIEVCKE 399 ++ +D NT AI A+ L +S D L + ILGI+ + Sbjct: 345 EEFFKSMDDDFNTPKAIAAIFGLINDSKSEIDSLADEDVFAVREFLDDVGFILGIDFDLK 404 Query: 400 HLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + I + QE L K++ +D IR QL G+ + D Sbjct: 405 DTGSSDELLTLISDVRQE---LRNNKQYELSDKIRNQLTDLGYEISD 448 >gi|162448886|ref|YP_001611253.1| hypothetical protein sce0616 [Sorangium cellulosum 'So ce 56'] gi|161159468|emb|CAN90773.1| cysS1 [Sorangium cellulosum 'So ce 56'] Length = 529 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 221/376 (58%), Gaps = 35/376 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL +K+ P +RMY CGPT YD AH+G+ R + D+L R LR G + Sbjct: 4 LRLHDTLTQKLAPLAPRRPGEVRMYCCGPTTYDVAHVGHGRAALAPDILVRHLRAR-GLR 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TD+DDKI++R+ E P++ ++++ + + +D L CL P +P+ Sbjct: 63 -VVYVRNVTDVDDKILQRS-AESGEPPMD-----LSARMARLYQEDVAALGCLTPDVEPK 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-----------EANNEIIFDTSSIPNYGSFSRRKIDEQ 173 + HIP++I L++ +I G AY ++ + S P+YG S+R +DE Sbjct: 116 VSEHIPEVIALVERLIERGAAYVVERPGDVRDVRDVRDVYYSVRSFPSYGKLSKRNLDEL 175 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 ++G RV K++P DF LWK P GW+SPWG+GRPGWHIECSAM+ YLG FD+ Sbjct: 176 RVGARVGPCEDKRDPLDFALWKGVAPGGWGWDSPWGKGRPGWHIECSAMAGRYLGAGFDV 235 Query: 234 HGGGLDLIFPHHENEIAQSCCA-DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 H GG+DL+FPHHENEIAQS A A+IWIHNGF+N++ KM+KS GNF+ + ++ Sbjct: 236 HCGGMDLVFPHHENEIAQSEAAHPEGAPLASIWIHNGFVNVDKEKMAKSLGNFVKLRDVY 295 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL 352 R+ P +R +L HYR P++F + + ++ +P ++ +D Sbjct: 296 ------ARNDPE-ALRYFLLTVHYRGPLEFDTHKRDDGRVV---FPGVVEAERRVD---- 341 Query: 353 SALYNDLNTVSAIQAL 368 LY L+ +SA+ AL Sbjct: 342 -YLYATLDRLSALSAL 356 >gi|327311486|ref|YP_004338383.1| cysteinyl-tRNA synthetase [Thermoproteus uzoniensis 768-20] gi|326947965|gb|AEA13071.1| cysteinyl-tRNA synthetase [Thermoproteus uzoniensis 768-20] Length = 480 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 174/486 (35%), Positives = 257/486 (52%), Gaps = 57/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT +++ +F P YVCG T YD H+G+ R + FD+ R L E+ Sbjct: 7 LRIYNTATKRMEQFSVRTPGIASGYVCGITPYDSVHVGHGRVYVFFDMFRRYL-----ER 61 Query: 65 CVTYVR---NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VR N TDIDDKII RAR+E + + + ++ F D R + P + Sbjct: 62 LGLQVRLVVNFTDIDDKIINRAREEFGADSVKRWREVPERYISEYF--DVMRRLYVKPAY 119 Query: 122 Q-PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 PR T ++ M+ I+ ++ G AY A + + F+ +P YG FS ++I+E G RV Sbjct: 120 AYPRVTENVEDMLGWIKALVDKGFAYVAPDGSVYFEVGKVPRYGEFSGQRIEELVAGARV 179 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K+NP DF LWK +P EP W+SPW GRPGWH+EC MS+ +LG FD HGGG D Sbjct: 180 EPEPGKRNPLDFALWKSWSPGEPWWDSPWCPGRPGWHLECVVMSTKHLGVPFDFHGGGAD 239 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIA + ++ A WIH G+L + G KMSKS GN IT+ E+L K+ G Sbjct: 240 LIFPHHENEIAIARAMFGVDYFARYWIHVGYLTVRGEKMSKSLGNIITLREVL--SKYSG 297 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------SKWPQTSTSKG------I 346 + +RLA M+HYR+P++F+ + L AE ++ + Q G + Sbjct: 298 EA-----LRLAYAMSHYRKPMEFSFELLDRAEDMVKTLYTAYDELGQAVADAGEGGSEPV 352 Query: 347 IDP------AVLSALYNDLNTVSAIQALHKLARE--STKNH-----------DLLPIFNA 387 ++P AL +D +T A Q L+ AR ST H D+L + Sbjct: 353 VEPFYKYVEGFYEALNDDFSTNEAAQRLYDAARYIISTVLHKIDKISREAVLDVLSKYVE 412 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+ + + + K + A++ LV+ R L + +++ AD IR++L + G L D+ Sbjct: 413 MADVLGL-LERREVPKEVQEAVKALVEARARLRQERQYQLADQIRERLSALGVDLHDF-- 469 Query: 448 PDNGQR 453 GQR Sbjct: 470 ---GQR 472 >gi|311745980|ref|ZP_07719765.1| cysteine--tRNA ligase [Algoriphagus sp. PR1] gi|126576191|gb|EAZ80469.1| cysteine--tRNA ligase [Algoriphagus sp. PR1] Length = 496 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 183/498 (36%), Positives = 260/498 (52%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK FQAI+P + +YVCGPTVY AH+G+ARP I FD + R L + + Sbjct: 6 LKLYNTLSRKKENFQAINPPFVGLYVCGPTVYGDAHLGHARPAITFDTVNRYLTHL--DY 63 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD+ +DKI ++A+ E P+ I + T + +D L Sbjct: 64 RVRYVRNITDVGHLQGDADEGEDKIAKKAKLEKLE-PME-----IAQQYTDSYHRDMALL 117 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRKID 171 P +PRAT HIP+ I L++ I+ G AYE N + FDT + YG S R I+ Sbjct: 118 NTWKPNIEPRATGHIPEQIALVEAILKEGLAYEVNGSVYFDTLKYNEKTPYGRLSGRVIE 177 Query: 172 EQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGK 229 E G+R + + K+NP DF LWK + P WESPWG G PGWH+EC+AMSS YLG Sbjct: 178 ELMSGSRDLDGQSEKRNPVDFALWKNAAPEHLMKWESPWGIGFPGWHLECTAMSSKYLGN 237 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIHGGG+DL+FPHHE EIAQ + + N W+HN + + G+KM KS GNFIT+ Sbjct: 238 HFDIHGGGMDLMFPHHECEIAQGNACNH-QDPVNYWMHNNMITINGQKMGKSLGNFITLQ 296 Query: 290 ELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSKWPQ 339 EL + + K +++ IR +L HYR +DF+ L A+ + ++K + Sbjct: 297 ELFKGEHKLLEQAYSPMTIRYFILTAHYRSTLDFSNDALKAAQKGYKKLINGLRIAKMLE 356 Query: 340 TSTSKGIIDPAVLS-----------ALYNDLNTVSAIQALHKLARE--STKNHDLLPIFN 386 TS +D + A+ +D NT AI L L ++ S L P Sbjct: 357 YQTSDVPVDEKQIEQIENSITNAYRAMDDDFNTAQAIGHLFNLLKKINSIYTGQLKPA-- 414 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKL--------VQERLILLKMKKFSSA---------D 429 + G EV + ++ I+ + L Q ++I L + +S A D Sbjct: 415 ----VFGEEVFSKLISTFITFVEDILGLTEEKSDTQNKMINLLLTLYSEAKTARDYAKVD 470 Query: 430 YIRKQLESKGFILEDYKN 447 IR L+ GF+++D K+ Sbjct: 471 EIRAGLKDLGFVVKDMKD 488 >gi|302803761|ref|XP_002983633.1| hypothetical protein SELMODRAFT_119009 [Selaginella moellendorffii] gi|300148470|gb|EFJ15129.1| hypothetical protein SELMODRAFT_119009 [Selaginella moellendorffii] Length = 502 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/336 (44%), Positives = 200/336 (59%), Gaps = 24/336 (7%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + R+ F+ P + MYVCG T YD++HIG+AR + FDVLYR + E VTYVR Sbjct: 1 MSREKEVFRPRIPGKLSMYVCGVTAYDYSHIGHARVYVFFDVLYRYFPFMGYE--VTYVR 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TDIDDKII+RA + D ++++ +F +D L CLAP+ +PR + +I Sbjct: 59 NFTDIDDKIIKRAND------LGDDPIELSNRFCDEFHRDMASLRCLAPSLEPRVSRNID 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDT-----SSIPN-YGSFSRRKIDEQKMGTRVPEKYH 184 Q+I +I I+ +G+ Y +N ++ + + P+ YG S RK+D+ + G RV Sbjct: 113 QIIKMISQILENGYGYVLDNGDVYFSLDKFVPAFPDSYGRLSGRKLDDNRAGERVAVDDR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF+LWK + EP WESPWG GRPGWHIECSAMS LG FDIHGGG+DLIFPH Sbjct: 173 KLNPGDFVLWKANG--EPSWESPWGAGRPGWHIECSAMSGATLGSSFDIHGGGMDLIFPH 230 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEI QS A E W+HNGF+ ++ KMSKS GNF TI E+ E + Sbjct: 231 HENEIVQSRAACH-ESNVTYWMHNGFVTVDSEKMSKSLGNFFTIREVFEL-------YHP 282 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 +R +L THYR PI+++ +L A L QT Sbjct: 283 LALRWFLLCTHYRSPINYSESQLQNASQRLFYLYQT 318 >gi|184201515|ref|YP_001855722.1| cysteinyl-tRNA synthetase [Kocuria rhizophila DC2201] gi|229558711|sp|B2GFS8|SYC_KOCRD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|183581745|dbj|BAG30216.1| cysteinyl-tRNA synthetase [Kocuria rhizophila DC2201] Length = 479 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 167/481 (34%), Positives = 253/481 (52%), Gaps = 56/481 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T I +F + P R+Y CG TV HIG+ R +VFDVL R LR+ E Sbjct: 3 LRFYDTASATIKDFVPVHPGEARLYYCGATVQGAPHIGHVRSALVFDVLARWLRFRGLE- 61 Query: 65 CVTYVRNITDIDDKIIERAR----QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VT VRN+TDIDDKI+ +R Q++ + + + F + L PT Sbjct: 62 -VTTVRNVTDIDDKILVNSRASYEQDYSGDHAREPWWALAYRFEGVFGQAYAALGIDRPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT H+P+M LIQ +I GHAY A + ++ FD S P YG +R+++++ + Sbjct: 121 YEPRATGHVPEMHALIQELIDAGHAYPATDGSGDVYFDVRSWPRYGELTRQRVEDMQDAP 180 Query: 178 RVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK P+ W+SPWGRGRPGWH+ECSAM+ YLG FDIH Sbjct: 181 DADPR-GKRDPRDFALWKGRKEDEPLSASWDSPWGRGRPGWHLECSAMAGKYLGAHFDIH 239 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGGLDL FPHHENE+AQS A R + AN W+HNG + EG KMSKS GN ++ ++L Sbjct: 240 GGGLDLRFPHHENELAQSTAAGR--EFANFWLHNGLVTYEGEKMSKSIGNTVSPQDMLRE 297 Query: 295 KKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---TSTSKGI---- 346 + P+ +R + HYR +D+ L EA + + + + G+ Sbjct: 298 AR--------PLAVRYYLGQAHYRSVLDYRPTSLQEATAAVERVEAVLVAARAAGLGLDR 349 Query: 347 ----IDPAVLSALYNDLNTVSAIQALHKLARE-----STKNHD----LLPIFNASAHILG 393 + ++ + +DLN A+ LH+ R +T +HD L+ + +LG Sbjct: 350 DTQDVPAEFVAVMDDDLNVPRALAVLHETVRAANSALATGDHDAARPLVAAVAGMSDVLG 409 Query: 394 I----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + EH + + + ++ L+ +R + ++SAD IR QL + G +++ Sbjct: 410 LLQLMDLEGAGAGGAEH--RALDVLVQDLLAQRAAARTARDWASADRIRDQLAAAGVVVK 467 Query: 444 D 444 D Sbjct: 468 D 468 >gi|6318288|gb|AAF06821.1|AF065890_2 cysteinyl-tRNA synthetase [Thermoproteus tenax Kra 1] Length = 484 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/476 (35%), Positives = 252/476 (52%), Gaps = 50/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT +++ F + P R YVCG T YD H+G+ R + FD+L R L + E Sbjct: 6 LRIYNTASKRVEPFSVLTPGVARGYVCGITPYDSVHVGHGRVYVFFDILRRYLEHLGLE- 64 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTH 121 V V N TD+DDKII RAR+E + DA+S + + +++ RL Sbjct: 65 -VKLVINFTDVDDKIINRAREEFGA----DAVSRWREVPERYIREYFDVMERLYVKPAYA 119 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PR T ++ M+ I+ ++ G+AY A + + F+ +P YG FS ++I+E G RV Sbjct: 120 YPRVTEYVGDMLEWIRALVDRGYAYVAPDGSVYFEVGKVPRYGEFSGQRIEELVAGARVE 179 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K+NP DF LWK +P EP W SPW GRPGWH+EC MS+ +LG FD HGGG DL Sbjct: 180 PEPGKRNPLDFALWKSWSPGEPWWNSPWCPGRPGWHLECVVMSTKHLGVPFDFHGGGADL 239 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIA + ++ A WIH G+L + G KMSKS GN IT+ E+L K+ G Sbjct: 240 IFPHHENEIAIARAMHGVDYFARYWIHVGYLTVGGEKMSKSLGNIITLKEVL--SKYDGE 297 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------KWPQTSTSKGIIDPAVLS 353 + +RLA M+HYR+P++F+ L A LL + Q G D A L+ Sbjct: 298 A-----LRLAYAMSHYRKPMEFSYDLLDRAVELLGTMYTAYDELSQAVADAGERDVAPLA 352 Query: 354 ------------ALYNDLNTVSAIQALHKLAR----------ESTKNHDLLPI---FNAS 388 AL +D++T A +AL+ +AR + L I + Sbjct: 353 EEASSYRRKFEEALADDMSTNEAARALYDMARFIISKVLYSVDKISRETALGILRDYAEM 412 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A +LG+ + K + + ++ A+ +V+ R L ++++ AD +R + + G + D Sbjct: 413 ADVLGL-LNKREVPRELAEAVRAIVEARSRLRSERQYALADMLRDRARALGVEMHD 467 >gi|299147030|ref|ZP_07040097.1| cysteine--tRNA ligase [Bacteroides sp. 3_1_23] gi|298514915|gb|EFI38797.1| cysteine--tRNA ligase [Bacteroides sp. 3_1_23] Length = 493 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFTGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P ++TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPASATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|160883992|ref|ZP_02064995.1| hypothetical protein BACOVA_01966 [Bacteroides ovatus ATCC 8483] gi|156110722|gb|EDO12467.1| hypothetical protein BACOVA_01966 [Bacteroides ovatus ATCC 8483] Length = 493 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFTGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P ++TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPSSTTSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|300088786|ref|YP_003759308.1| cysteinyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528519|gb|ADJ26987.1| cysteinyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 482 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 242/487 (49%), Gaps = 64/487 (13%) Query: 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +KI NTL F+ A DP + MYVCG T AHIG+A I FDV+ R L Y G Sbjct: 1 MKISNTLTGTREVFKPAADP--VSMYVCGITPQSSAHIGHAMSYINFDVIRRYL-LYRGY 57 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V YV+N TD+DDKII +A P + +N F D + L L P Sbjct: 58 R-VKYVQNFTDVDDKIIAKA------APAGLTPLELADRNIADFQADMSALNILPADAYP 110 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T IP +I L++ ++ G AYE + F + +YG S R +++ + G R+ Sbjct: 111 RVTEEIPAIIELVEGLVARGFAYEVRGSVYFRVRRLADYGKLSHRTLEQMQAGARIEVDE 170 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG+GRPGWHIECSAMS YLG+ DIHGGG DLIFP Sbjct: 171 TKEDPMDFVLWKATKPGEPAWASPWGQGRPGWHIECSAMSHKYLGETIDIHGGGADLIFP 230 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + W+HNG L L G KMSKS GN ITI E L+ + Sbjct: 231 HHENEIAQSESFTGQKPFVRYWLHNGLLQLGGEKMSKSLGNLITIKEALQ-------KYS 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------- 350 A +R+ +L +HYR P+ ++ + + AE + Q + K + A Sbjct: 284 ADALRVFVLSSHYRSPLTYSDEIVEAAEKGARRLTQAAGDKTVTSEADDPLFDREVCRSR 343 Query: 351 VLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIEV------C 397 + A+ +D NT A+ AL LAR E + + A +LG+ + Sbjct: 344 FVEAMDDDFNTPRALAALFDLARDINRLEAEGRPTGKVRALLRELAGVLGLRLESADKTA 403 Query: 398 KEH--------------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 +H + + A+ ++ R L + K ++ AD +R +L+ Sbjct: 404 GDHSGLLVAAAEIWRADGRELPDWDGDAERAMADILSLRAELRREKNYAEADKLRNRLDE 463 Query: 438 KGFILED 444 G +++D Sbjct: 464 TGIVIKD 470 >gi|299135529|ref|ZP_07028713.1| cysteinyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8] gi|298601653|gb|EFI57807.1| cysteinyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8] Length = 494 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 183/513 (35%), Positives = 253/513 (49%), Gaps = 78/513 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL KI A D +R Y CGPTVYD+ HIGN R + D+L R R Y Sbjct: 3 LELFNTLSGKIEPLFASDGHALRFYCCGPTVYDYGHIGNFRTFLHVDMLRRTARLY--GM 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +V NITD+DDKII A + +PI + T+K + F +D L P R Sbjct: 61 GLHHVMNITDVDDKIIRNA--GNAGLPIGE----YTAKFERAFFEDMDALGVERPEQIAR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT +I M+ LI+ + AY+A + F + P YG S++ + + G RV ++ Sbjct: 115 ATENIGDMVTLIERLAAQDIAYKAEDGSWYFRIARFPEYGKLSKKDFEGIEDGARVDVDE 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 Y K DF LWK + P E W++ G+GRPGWHIECSAM+ YLG FD+H GG DL+F Sbjct: 175 YDKDAARDFALWKATKPGETSWDTALGKGRPGWHIECSAMAMKYLGDSFDLHAGGEDLMF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + A W H FL +EG+KMSKS GNF T+ +LL + Sbjct: 235 PHHENEIAQSECATH-QPFARHWFHVRFLLVEGKKMSKSEGNFYTLRDLLL------KGH 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTE------------AEILLSKWPQTSTSKGIIDPA 350 A IR +L YR ++FT LTE A I KWP+++ + + A Sbjct: 288 RASAIRFLLLSVPYRHQLNFTFDGLTESTNAVERLRTFYARIRDGKWPESAPADDSVASA 347 Query: 351 V-------LSALYNDLNTVSAIQALHKLARESTKNHD--------------LLPIFNASA 389 + +AL NDLNT A A+ + R D LL F++ Sbjct: 348 IRLGDEKFTAALGNDLNTAEARAAIFDVLRAVNSAADQSKLVRTDADAMLTLLAKFDSIF 407 Query: 390 HILG-------------------IEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSS 427 +L + L +S++ I+ LV ER + K + F+ Sbjct: 408 AVLEDHDAELTRAAIAWAESEGRLGEADASLLATLSLSDADIDALVAERTLAKKQRNFAR 467 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 AD +R +L KG ILED K+ RWK+K Sbjct: 468 ADAVRNELLEKGIILEDSKDG------VRWKRK 494 >gi|325844466|ref|ZP_08168193.1| cysteine--tRNA ligase [Turicibacter sp. HGF1] gi|325489140|gb|EGC91524.1| cysteine--tRNA ligase [Turicibacter sp. HGF1] Length = 446 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 247/465 (53%), Gaps = 59/465 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNT R+ EF+ I+ + +RMY+CGPTVY++ HIGNARP++ FD+++R +Y E V Sbjct: 3 IYNTYTREKEEFRPIEENKVRMYICGPTVYNYIHIGNARPVLFFDLVHRYFKYLGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +V N+TD+DDKII RA +E + + I+ K F++ L L T P+ T Sbjct: 61 EFVSNVTDVDDKIINRAIEEGVTE------AQISEKYLNYFLECNKVLNALPLTAMPKVT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 + MI I ++ AY + ++ F + YG S +KIDE ++G R+ E K+ Sbjct: 115 ESMDSMIEFINQLVERDFAYAVDGDVYFRIDKVREYGQLSGKKIDELEVGARIAEDSKKE 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHH 245 NP DF+LWK+ T W+SPWG GRPGWH EC M ++ + GK+ DIHGGG DL FPHH Sbjct: 175 NPLDFVLWKK-TDKGITWDSPWGAGRPGWHTECVVMINNQFHGKI-DIHGGGTDLQFPHH 232 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS C AN W+H G L L KMSKS GN I + +L+E A Sbjct: 233 ENEIAQSLCMYE-HNIANYWMHVGRLGLNNEKMSKSIGNVINVKDLIE-------QIDAN 284 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID--PAV-- 351 RL ML HYR+PI++T + + ++ + +W + ++ G +D P+V Sbjct: 285 AFRLFMLSVHYRQPINYTEENI---QLAVKEWQKVKSTYDQLHLKLDLAGALDVEPSVVP 341 Query: 352 ---------LSALYNDLNTVSAIQALHKLARESTK----------NHDLLPIFNASAHIL 392 + AL +D NT +AI +L+ +E K N L +I Sbjct: 342 EIEALMNQFVEALEDDFNTANAIASLYGAIKEINKMVRAKASDEANRYALMTLQNMTYIF 401 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 G ++ K+ L ++ + R K K F+ AD +R +L++ Sbjct: 402 GFDLNKKRLTDEERELMQAWEEAR----KAKDFAKADELRGKLQA 442 >gi|45358623|ref|NP_988180.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis S2] gi|61216204|sp|Q6LYD1|SYC_METMP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|45047489|emb|CAF30616.1| Cysteinyl-tRNA synthetase [Methanococcus maripaludis S2] Length = 476 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 167/485 (34%), Positives = 247/485 (50%), Gaps = 56/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF+ ++ ++MYVCGPTVYD H+G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRCEEEFKTLNEKEVKMYVCGPTVYDNTHLGHGRTYVSFDIIRRYLEHM--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA ++ P I+ + + F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRAYEKEKD-PKE-----ISEQFIKVFLDDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I I+ +I G AY+ + + F+ NYG S +++ G R+ Sbjct: 114 VTEHISEIIAFIEKLIEKGFAYKTEDGVYFEVKKFKNYGKLSNINLEDLVSGARIETSEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKN DF LWK + P EP WESP+G GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNQKDFALWKTAKPGEPKWESPFGSGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNF+TI ++ + + Sbjct: 234 HENEIAQSSAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFVTIGDI-------SKEYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDPAVL- 352 ++R + HYR PID+T + + + L K ++ S+ + L Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMNHVKNNLEKIYNVIENIRISLEKSEKSRTWDENEFLL 345 Query: 353 ------------SALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNAS 388 +A+ +D NTV A++++ +++ K L L + Sbjct: 346 YDILKNSKNNFYNAMNSDFNTVKALKSVFEVSNGVNKYLSLTKTPSEGLLLKALDFYKII 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ KE + + + L++ R + K + +D IR L++ G+ +ED Sbjct: 406 GEIFGLFENYFKESSDSDEEEFVTFLIELRSDVRLQKNYEMSDKIRDGLKNLGYQIED-- 463 Query: 447 NPDNG 451 NP G Sbjct: 464 NPKEG 468 >gi|237720477|ref|ZP_04550958.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_2_4] gi|229450228|gb|EEO56019.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_2_4] Length = 493 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFTGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P ++TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPASATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDKIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 ALTALGFEIKDTKD 485 >gi|30316152|sp|Q8DHW6|SYC_THEEB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 486 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 167/492 (33%), Positives = 250/492 (50%), Gaps = 69/492 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R++ F + P + +Y CG TVYD+ H+G+AR + +DVL R L + Sbjct: 3 LHLYNTLSRRLEPFSPLHPERVTIYACGVTVYDYCHLGHARSYVAWDVLRRYLTFL--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA + + ++ ++ + + +D L L + PR Sbjct: 61 TVHYVQNFTDIDDKILRRAYEN------GETMATVSDRYIAAYHQDMAALNILPASAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT IP++I LIQ ++ G+AY A ++ + + P+YG S R++++ G Sbjct: 115 ATEVIPEIINLIQGLLDRGYAYVAGGDVYYAVAQFPSYGKLSGRQLEQLMAGASGRIEEE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E+ K++P DF LWK + P E WE+PWG+GRPGWHIECSAM G DIH G Sbjct: 175 EEQRKRHPLDFALWKAAKPEEMSVYHPWEAPWGKGRPGWHIECSAMVRQAFGATVDIHCG 234 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+DLIFPHHENEIAQS + + A W+HNGF+ + KMSKS GNF TI +LL Sbjct: 235 GMDLIFPHHENEIAQSEAVTQ-QPLARFWLHNGFVTVNTEKMSKSLGNFTTIRDLL---- 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---------------EILLSKWPQTS 341 + +RL +L YR+P+DFT + LT A +I L Sbjct: 290 --AQGLDPMALRLLVLQAQYRKPLDFTPEALTAAAKGWQTLGEALHLHQQIPLPPIDAAE 347 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN---------------------HD 380 A A+ DLNT +A+ + +LA+ + H Sbjct: 348 VRSHPKTEAFCQAMDEDLNTAAALAVIFELAKTLNREQHRYLHGGGWGRSPAEVSRDWHT 407 Query: 381 LLPIFNASAHILGIEVCKEHLNKNISI-----AIEKLVQERLILLKMKKFSSADYIRKQL 435 L+ + A +LG+E KE N +++ I+ L+ R + K ++ +D +R L Sbjct: 408 LVTL----AQVLGLE-AKEESNPALTVELTDEEIQALIAARTAARQAKNYTESDRLRDLL 462 Query: 436 ESKGFILEDYKN 447 ++G L D K+ Sbjct: 463 LAQGVKLVDQKD 474 >gi|301630357|ref|XP_002944288.1| PREDICTED: cysteinyl-tRNA synthetase-like [Xenopus (Silurana) tropicalis] Length = 433 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 164/449 (36%), Positives = 235/449 (52%), Gaps = 59/449 (13%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD H+G+AR M+ FDV+ R LR VT+VRNITDIDDKII RA Sbjct: 1 MYVCGMTVYDLCHVGHARSMVAFDVVQRWLRA--SGLAVTFVRNITDIDDKIIRRA---- 54 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + I +T + + +D L PTH PRAT+++PQM+ +++ + G AY Sbjct: 55 --VESGETIGALTRRMIDEMYRDADALGVERPTHDPRATDYVPQMLDIVRRLEDQGLAYR 112 Query: 148 A-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS---TPMEPG 203 A + ++ F P YG S + +DE + G RV + K++P DF+LWK + P E Sbjct: 113 APSGDVNFAVRKFPGYGKLSGKTLDELQAGERVAVQDGKQDPLDFVLWKAAKANEPQEAK 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W+S +G+GRPGWHIECSAM LG+ FDIHGGG DL FPHHENEIAQS A+ + A Sbjct: 173 WDSGYGQGRPGWHIECSAMCGALLGQTFDIHGGGADLQFPHHENEIAQSEGANG-QPLAR 231 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+HNGF+N++ KMSKS GNF TI ++L + A IR ++ +HYR P++++ Sbjct: 232 FWMHNGFINIDNEKMSKSLGNFFTIRDVLG-------QFDAETIRFFVVRSHYRSPLNYS 284 Query: 324 VQRLTEAEILLSKWPQTSTSKGIIDPAVL-------------SALYNDLNTVSAIQALHK 370 L +A L + T+ ++ PA + +A+ D T A+ L Sbjct: 285 DAHLQDARGGLKR---LYTALSVVAPAEVPIDWADPYAARFKAAMDEDFGTPEAVAVLFD 341 Query: 371 LARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLIL----------- 419 LA E + SA + G + + +Q L Sbjct: 342 LAGEVNRRR--------SATLAGQLKALGGCLGLLQGDAQTFLQAGTGLDASAIAAQIAA 393 Query: 420 ----LKMKKFSSADYIRKQLESKGFILED 444 + F+ AD IR +L ++G +L+D Sbjct: 394 RAAAKGARNFAEADRIRAELLAQGIVLKD 422 >gi|75760638|ref|ZP_00740667.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491881|gb|EAO55068.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 339 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 140/323 (43%), Positives = 194/323 (60%), Gaps = 16/323 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + Sbjct: 3 IHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A + +P I + + + +D T L C T PR Sbjct: 62 -VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAYFEDVTALGCKHATVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 115 VTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRL 327 +IR ML HYR PI+F+ + L Sbjct: 287 QLIRFFMLSVHYRHPINFSEELL 309 >gi|302817808|ref|XP_002990579.1| hypothetical protein SELMODRAFT_131888 [Selaginella moellendorffii] gi|300141747|gb|EFJ08456.1| hypothetical protein SELMODRAFT_131888 [Selaginella moellendorffii] Length = 492 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 185/492 (37%), Positives = 249/492 (50%), Gaps = 83/492 (16%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 + MYVCG T YD++HIG+AR + FDVLYR + E VTYVRN TDIDDKII+RA Sbjct: 16 LSMYVCGVTAYDYSHIGHARVYVFFDVLYRYFTFMGYE--VTYVRNFTDIDDKIIKRAND 73 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + D ++++ +F +D L CLAP+ +PR + +I Q+I +I I+ +G+ Sbjct: 74 ------LGDDPIELSNRFCDEFRRDMASLRCLAPSLEPRVSRNIDQIIKMISQILENGYG 127 Query: 146 YEANNEIIFDT-----SSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 Y +N ++ + + P+ YG S RK+D+ + G RV K NP DF+LWK + Sbjct: 128 YVLDNGDVYFSLDKFVPAFPDCYGRLSGRKLDDNRAGERVAVDDRKLNPGDFVLWKANG- 186 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP WESPWG GRPGWHIECSAMS LG FDIHGGG+DLIFPHHENEI QS A E Sbjct: 187 -EPSWESPWGAGRPGWHIECSAMSGATLGSSFDIHGGGMDLIFPHHENEIVQSRAACH-E 244 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 W+HNGF+ ++ KMSKS GNF TI E+ E + +R +L THYR P Sbjct: 245 SNITYWMHNGFVTVDSEKMSKSLGNFFTIREVFEL-------YHPLALRWFLLCTHYRSP 297 Query: 320 IDFTVQRLTEAEILLSKWPQT------------------------STSKGIIDPAVLSAL 355 I+++ +L A L QT + + + ++ S+L Sbjct: 298 INYSESQLQNASQRLFYLYQTLFDAKRCVEGSQKEEKSYVVSQKAAENAKALRLSLRSSL 357 Query: 356 YNDLNTVSAIQAL------------HKLARESTKNH---DLLPI-FNASAHILGIEV--- 396 +DLNT I AL K R+ + DLL + + +LG V Sbjct: 358 ADDLNTPVTIGALSEPLKLMNELLHSKRGRKDKSRYSSLDLLRLEVEQALEVLGFSVADY 417 Query: 397 --------CKEHLNKNISIAIEKLVQ--ERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 CK L + E L+Q ER K F +D IR +L S G L Sbjct: 418 SQALFLPTCKA-LKRAGLTEDELLLQIHERAAARASKDFGKSDEIRDKLSSLGISL---- 472 Query: 447 NPDNGQRMTRWK 458 D G T W+ Sbjct: 473 -MDGGGDETLWR 483 >gi|293368873|ref|ZP_06615476.1| cysteine--tRNA ligase [Bacteroides ovatus SD CMC 3f] gi|292636022|gb|EFF54511.1| cysteine--tRNA ligase [Bacteroides ovatus SD CMC 3f] Length = 493 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFIPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFTGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P ++TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPASATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDKIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 ALTALGFEIKDTKD 485 >gi|124514778|gb|EAY56290.1| Cysteinyl-tRNA synthetase, class Ia [Leptospirillum rubarum] Length = 490 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 182/484 (37%), Positives = 251/484 (51%), Gaps = 51/484 (10%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY 68 NTL +K P + MYVCG TVYD H+G+AR VFD+L+RLL G + V Y Sbjct: 21 NTLTQKTEPLSPRIPGEVTMYVCGVTVYDDCHLGHARSQTVFDLLHRLL-LRLGYR-VRY 78 Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 VRNITDIDDKII +A++ I+ IT F +D RL L P +PRAT + Sbjct: 79 VRNITDIDDKIIRKAQE------TGRTITEITDIYIDSFQRDMGRLGVLPPNKEPRATLY 132 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 + MI LI ++ G AY+ N++ F +YG S +K+DE + G R+ K++P Sbjct: 133 LEPMIRLIGTLLDKGFAYKKGNDVYFRVRKYQSYGELSHQKLDELQAGARIVADEEKEDP 192 Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 DF LWK + EP + + +G GRPGWHIECSAMS LG+ DIHGGG+DL+FPHHENE Sbjct: 193 LDFALWKGAKIGEPSYPAFFGEGRPGWHIECSAMSLSELGETIDIHGGGMDLMFPHHENE 252 Query: 249 IAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG---GRSWPAP 305 AQS CA ++ IWIHNGF+ L KMSKS GN I ET F R W Sbjct: 253 RAQSECATG-KRFVGIWIHNGFVTLNEEKMSKSLGNIFRIRTFFETSPFPEGVTREW--- 308 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSALY 356 +R +L THY P+D T + L A+ L +G + LSAL Sbjct: 309 -LRAFLLSTHYGSPVDLTDENLAHAKNALDSLYLFKDRLDSVLGEVREGQMTREFLSALC 367 Query: 357 NDLNTVSAIQALHKL------------ARESTKNHDLLPIFNASAHILGIEVC------- 397 D++T A + LH+ + + + D+ +F + LGI Sbjct: 368 RDMDTPVAFRVLHEAKNSLNPVLGSGGSLKEERLSDVRALFEVAKSTLGILTLPASEWVY 427 Query: 398 --KEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E + S+ +++LV ER + K ++ AD IR++L+ G++LED NP Sbjct: 428 GKGEKTGREESLLPEEVDRLVLEREKARREKDYARADGIRERLKKAGYLLED--NPGGLP 485 Query: 453 RMTR 456 R+ + Sbjct: 486 RIRK 489 >gi|213865169|ref|ZP_03387288.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 283 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 188/290 (64%), Gaps = 10/290 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L+ Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK 282 >gi|6599476|gb|AAF18750.1|AF163997_1 cysteinyl-tRNA synthetase [Methanococcus maripaludis] Length = 476 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 172/485 (35%), Positives = 244/485 (50%), Gaps = 56/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ ++ + ++MYVCGP VYD H+G+ R + D++ R L + Sbjct: 2 LKVYNTLTRKEEEFKTLNKNEVKMYVCGPPVYDTTHLGHGRTYVSLDIIRRYLEHI--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA ++ P I+ + + F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRAYEKGKD-PKE-----ISEQFIKVFLDDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I I+ +I G AY+ + + F+ NYG S +++ G RV Sbjct: 114 VTEHISEIIAFIERLIEKGFAYKTEDGVYFEVKKFKNYGKLSNINLEDLVSGARVETSEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKN DF LWK + P EP WESP+G+GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNQKDFALWKTAKPGEPKWESPFGKGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N WIH GF+ + G KMSKS GNFITI ++ + + Sbjct: 234 HENEIAQSSAYSG-KDWVNYWIHTGFVMVNGEKMSKSLGNFITIGDI-------SKEYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------WPQTSTSK 344 ++R + HYR PID+T + + + L K W + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMNHVKNNLEKIYNVIENIRISLEKSEKSRIWGENEFLL 345 Query: 345 GIIDPAVLSALYN----DLNTVSAIQALHKLARESTKNHDL------------LPIFNAS 388 I + YN D NTV A++++ +++ K L L + Sbjct: 346 YDILKNSKNNFYNAMNSDFNTVEALKSVFEVSNGVNKYLSLTETPSEGLLLKALDFYKII 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ KE N ++ L++ R L K + +D IR L++ G+ +ED Sbjct: 406 GEIFGLFENYFKESSESNEEEFVKFLIELRSDLRLQKNYEMSDKIRDGLKNLGYQIED-- 463 Query: 447 NPDNG 451 NP G Sbjct: 464 NPKEG 468 >gi|320334065|ref|YP_004170776.1| cysteinyl-tRNA synthetase [Deinococcus maricopensis DSM 21211] gi|319755354|gb|ADV67111.1| cysteinyl-tRNA synthetase [Deinococcus maricopensis DSM 21211] Length = 485 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 183/494 (37%), Positives = 254/494 (51%), Gaps = 73/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL--YRLLRYYYG 62 I +++TL R+ +F+ P + MY+CGPTVY AH+G+A+ + FDV+ Y L R Y Sbjct: 8 IYLHDTLTRQKVKFEPTTPGRVGMYLCGPTVYSDAHVGHAKKEVAFDVVRRYFLHRGY-- 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 V YV NITD+ +DKI +RA E P+ + K FV D Sbjct: 66 --AVRYVSNITDVGHLQNDSDDGEDKIAKRAALEQLE-PME-----VADKYFWSFVSDME 117 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 RL L P+ PRAT HI + I LI+ +I GHAY AN + FD S P YG S RK+D+ Sbjct: 118 RLNVLKPSINPRATGHITEQIELIEELIARGHAYAANGSVYFDVRSWPRYGVLSGRKLDD 177 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLG 228 Q+ GTR + K++P DF LWKR+ E G W+SPWG G PGWHIECSAMS YLG Sbjct: 178 QEEGTREDVREEKRDPRDFALWKRA---EAGHIMRWDSPWGVGFPGWHIECSAMSLKYLG 234 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGGLDL FPHHE EIAQS A A W+HN L + G KMSKS GNF T+ Sbjct: 235 EGFDIHGGGLDLQFPHHEAEIAQSEAAG--HAFARYWMHNNMLTIGGEKMSKSKGNFTTL 292 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA--EIL--- 333 +L GR P V+R ++ +HYR + +RL EA E+ Sbjct: 293 ADLY------GRVDPM-VVRFLLISSHYRSITEMNDDAFVSAANGYRRLNEALHEVERRL 345 Query: 334 --LSKWPQTSTSKGIID--PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS- 388 + + S+ I A +A+ +D NT A+ AL L + + + NA+ Sbjct: 346 PDAADGEDAALSRKIAGHVAAFEAAMSDDFNTPKAVAALFGLTTDVNAALNAGAVPNATL 405 Query: 389 -----------AHILGI----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG+ + ++ + +S ++ +++ R K++ AD +R Sbjct: 406 VAARDAYRQLGGDVLGLFADTQDARQDDTQLVSALMDLVLKARQNYRLNKQYGEADELRD 465 Query: 434 QLESKGFILEDYKN 447 L G +ED K+ Sbjct: 466 TLTKVGVTVEDTKD 479 >gi|229067855|ref|ZP_04201172.1| Cysteinyl-tRNA synthetase [Bacillus cereus F65185] gi|229188375|ref|ZP_04315423.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10876] gi|228595049|gb|EEK52820.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10876] gi|228715214|gb|EEL67073.1| Cysteinyl-tRNA synthetase [Bacillus cereus F65185] Length = 440 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 169/464 (36%), Positives = 244/464 (52%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 +P I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 59 EDVPT------IADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWP--------QTSTSKGIID-------------PAVLSALYNDLNTVSAIQ 366 L + + +S + D A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEIEKFQTAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTK----NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + H + A ILG+E+ K + + IE+L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDILGLELSK---EELLDEEIEELIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILED------TAQGTRWKR 439 >gi|306817738|ref|ZP_07451480.1| cysteine--tRNA ligase [Mobiluncus mulieris ATCC 35239] gi|304649552|gb|EFM46835.1| cysteine--tRNA ligase [Mobiluncus mulieris ATCC 35239] Length = 538 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 145/341 (42%), Positives = 200/341 (58%), Gaps = 26/341 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ + EF+ + P + +Y+CGPTV H+G+ R + FDVL R LR E Sbjct: 1 MKLYDSATHAVREFKPLTPGKVGLYLCGPTVQGAPHLGHLRAALDFDVLVRWLRRSGLE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI++++R+ + + + ++F L + P P Sbjct: 60 -VTYVRNVTDIDDKILKKSRE------LGVPWWALAAHFEREFDWAYRALNTVPPDVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-----DEQKMGTR 178 AT HIPQ I L+Q +I GHAY + + F S+P+YGS + +++ E Sbjct: 113 ATGHIPQQIALVQRLIDRGHAYADTAGNVYFAVKSLPDYGSLTNQRVADLATTEDAAQID 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + K++P DF LWK + P EP W++PWGRGRPGWH+ECSAMS YLG FDIHG Sbjct: 173 AATESGKRDPRDFALWKAAKPEEPADAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDIHG 232 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDL FPHHENE AQS A A +W+HN +L L+G KMSKS GN + + LL Sbjct: 233 GGLDLRFPHHENEQAQSHGAGW--GFARLWMHNAWLTLKGEKMSKSVGNVVGVRRLLG-- 288 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 WPAPV+RLA++ THYR ++F+ L +A L K Sbjct: 289 -----KWPAPVVRLAVIATHYRTNLEFSEDTLVQAAGLWDK 324 >gi|126465424|ref|YP_001040533.1| cysteinyl-tRNA synthetase [Staphylothermus marinus F1] gi|166225308|sp|A3DLW5|SYC_STAMF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126014247|gb|ABN69625.1| cysteinyl-tRNA synthetase [Staphylothermus marinus F1] Length = 477 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 243/483 (50%), Gaps = 63/483 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL--YRLLRYYYG 62 IKIYNTL RKI EF+ + P ++MYVCGPTVYD+ HIG+ R +V+D L Y LR Y+ Sbjct: 4 IKIYNTLTRKIEEFKPVSPGFVKMYVCGPTVYDYNHIGHGRVYVVYDALKRYLALRGYH- 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V NITDIDDKII RA QE I T+ +++ +L H Sbjct: 63 ---VLHVMNITDIDDKIINRAHQE------KRDWREIAETYTRDYLESLGKLNVKVDLH- 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR T HI ++I IQ +I G+AY A + + F+ P YG S R +++ ++ E Sbjct: 113 PRVTEHIKEIIEFIQILIDKGYAYVAPSGSVYFEVDKYPEYGELSGRT--NKELWSQEKE 170 Query: 182 KY-HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK P DF LWK P EP W++PWG+GRPGWHIECS MSS YLG+ FDIHGGG DL Sbjct: 171 FISEKKKPYDFALWKAWKPGEPHWDAPWGKGRPGWHIECSVMSSRYLGRQFDIHGGGTDL 230 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENE AQS A ++ W+H G + + KMSKS GN I + E + Sbjct: 231 IFPHHENERAQSEAAFGVKPWVKYWVHTGMVMMGSEKMSKSLGNIIPLREAF-------K 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVL------- 352 W +RL L +HYR P+ FT + + +A+ + T+T K + AV Sbjct: 284 EWGPETLRLWYLTSHYRRPLVFTEESIRQAQKYYERLVSVTNTIKKLSREAVSLHRMNDE 343 Query: 353 ----------------SALYNDLNTVSAIQALHKLARESTKN-------------HDLLP 383 AL ND NT A+ + + K + LL Sbjct: 344 DLKILEKLLEIRSRFHEALSNDFNTPQALAVISEFMTLVFKEIQYNPKYMLVLTAYKLLR 403 Query: 384 IFNASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 FN +L + + E L + I +V R L + K + AD IR +L G I Sbjct: 404 EFNTVLGVLDKYLVETPEELETLLDNVINIVVDIRRELRERKLYDLADRIRSELGKHGII 463 Query: 442 LED 444 L D Sbjct: 464 LMD 466 >gi|295698510|ref|YP_003603165.1| cysteinyl-tRNA synthetase [Candidatus Riesia pediculicola USDA] gi|291157420|gb|ADD79865.1| cysteinyl-tRNA synthetase [Candidatus Riesia pediculicola USDA] Length = 469 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 174/475 (36%), Positives = 253/475 (53%), Gaps = 52/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ RK +F I + MYVCG T YD HIG+ R +FD++ + LR+ G K Sbjct: 2 LKIYNTIHRKKEKFIPIVKGKVSMYVCGITAYDLCHIGHGRTFTIFDMITKYLRFM-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRNITDIDDKII++A Q+ + K T++ KD L P +P Sbjct: 61 -VNHVRNITDIDDKIIQKAIQKKTDY------EFLAQKMTEEMRKDFRNLKISQPNIEPN 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKID---EQKMGTRVP 180 +T+++ I LI+ + +G Y + + +I+F+T P YG+ S+R E+K G + Sbjct: 114 STSYVQSTIDLIKILEKNGKTYRSLSGDILFNTKENPEYGNLSKRNEILNLERKFGRNIK 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK +DFILWK + EP W SPWG+GRPGWH EC+AMS+ LGK FDIHGGG DL Sbjct: 174 NLQSKKCLSDFILWKSAKEGEPFWNSPWGKGRPGWHTECAAMSTKILGKNFDIHGGGSDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENE QS A + AN WIH G L ++ +KMSKS+GNF I ++ Sbjct: 234 IFPHHENERIQSIVAYG-DNFANYWIHTGMLKIQEKKMSKSDGNFFKIRDICS------- 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKG-----II 347 ++ + VIR L +HYR +++++ ++ +++ L K P+ K Sbjct: 286 AYNSEVIRYFFLSSHYRHHLNYSINKINQSKRSLEKLYFSLIGTNPEHPIQKNDRYLEKF 345 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAREST------------------KNHDLLPIFNASA 389 + A + A+ +D NT A L K+++E K ++L + N S Sbjct: 346 EKAFIEAMNDDFNTPKAYSILFKISKEINLQKKININIANRLAKILKKMANVLGLLNQSV 405 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 H ++ + L + + IE ++Q R K K + AD IRK L G ILED Sbjct: 406 HQF-FKINRITLKEIKNQEIENIIQIREKARKNKNWEEADRIRKDLYQIGIILED 459 >gi|148269355|ref|YP_001243815.1| cysteinyl-tRNA synthetase [Thermotoga petrophila RKU-1] gi|170288013|ref|YP_001738251.1| cysteinyl-tRNA synthetase [Thermotoga sp. RQ2] gi|281411948|ref|YP_003346027.1| cysteinyl-tRNA synthetase [Thermotoga naphthophila RKU-10] gi|229558798|sp|A5IJ66|SYC_THEP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558801|sp|B1L7Y7|SYC_THESQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|147734899|gb|ABQ46239.1| cysteinyl-tRNA synthetase [Thermotoga petrophila RKU-1] gi|170175516|gb|ACB08568.1| cysteinyl-tRNA synthetase [Thermotoga sp. RQ2] gi|281373051|gb|ADA66613.1| cysteinyl-tRNA synthetase [Thermotoga naphthophila RKU-10] Length = 460 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 169/467 (36%), Positives = 243/467 (52%), Gaps = 44/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I NTL K EF I P +RMYVCGPTVYD H+GNARP +VFDV R L Y G + Sbjct: 1 MRITNTLTGKKEEFVPIQPGVVRMYVCGPTVYDLIHVGNARPAVVFDVFRRYLEYR-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + V+N TDIDDKII +A Q + + ++ +D L PR Sbjct: 60 VIM-VQNFTDIDDKIINKANQ------LGVDYKTVADTFIAEYWRDAHALGIRPANFHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++ +I+ ++ G AY+ + FD YG S++KI++ G RV Sbjct: 113 TTDFVDDIVEIIERLVEKGVAYQTETGVYFDVRKFEKYGELSKKKIEDLIAGARVEVDET 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF LWK++ P EP W+SPWG GRPGWHIEC+ MS LG+ FDIH GG DL+FPH Sbjct: 173 KKFPLDFSLWKKAKPGEPCWKSPWGEGRPGWHIECTVMSVKILGESFDIHAGGEDLVFPH 232 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENE AQ+ ++ A W+HNG + G KMSKS GN T+ E + K++G Sbjct: 233 HENEKAQAEALTGKV--FARYWMHNGMVRFLGDKMSKSTGNIFTVREAV--KRYGRDG-- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAV----------- 351 +R +L HYR P+DF+ + L + + + W + D + Sbjct: 287 ---LRYMILSKHYRSPMDFSEELLQDYSRAVKRVWEILGRYEKSGDIGIPKRNAVYEEYV 343 Query: 352 ---LSALYNDLNTVSAIQALHKLARESTKNHD-------LL---PIFNASAHILGI-EVC 397 + AL +D NT A+ + +LAR +K D LL I +LG+ ++ Sbjct: 344 NRFVEALDDDFNTPVAVSLIFELARNLSKAMDDNDREDALLYYHLIRREFGPVLGLFDLN 403 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E + ++ L++ R +L K K++ +D IR L G IL+D Sbjct: 404 EEKKEVSSEELLKLLIEVRDVLRKEKRYDLSDRIRDHLREIGIILKD 450 >gi|229492425|ref|ZP_04386229.1| cysteinyl-tRNA synthetase [Rhodococcus erythropolis SK121] gi|229320654|gb|EEN86471.1| cysteinyl-tRNA synthetase [Rhodococcus erythropolis SK121] Length = 466 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 247/476 (51%), Gaps = 52/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IY++ + + EF + P+ + +YVCGPTV HIG+ R +V+D+ R L + Sbjct: 3 IRIYDSGHQALREFVPLRPARVSIYVCGPTVQSAPHIGHLRSALVYDLWRRWLTHR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT VRN+TDIDDKI+ A + P A + T +F + T L L PT++PR Sbjct: 61 TVTLVRNVTDIDDKILALATESEPWWA--RAYRVET-----EFTRAYTALGILPPTYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 + HI + + LI ++ GHAY A++ ++ FD SS YG+ +R+ D + + Sbjct: 114 TSGHITEALALIDRLLRRGHAYVASDGSGDVYFDVSSWQTYGTLTRQNPDA-LLQSDDGH 172 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K+NP DF LWK + P EP W SPWG GRPGWHI+CSAMS YLG FDIHGGG+ Sbjct: 173 RQAKQNPQDFALWKGTNPSEPKSARWPSPWGTGRPGWHIQCSAMSRRYLGPAFDIHGGGI 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A ++ A W+HNG + + G+KM+KS N+++ +ELL Sbjct: 233 DLRFPHHENELAQSTAAG--DEFARYWVHNGLVTISGQKMAKSLDNYLSADELLR----- 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGII 347 R PA +R +L HYR +D+ + LT + +++ + + Sbjct: 286 -RVGPA-TLRYYLLSAHYRSALDYQEEALTYTQATVARIANFQHRARTHLEDATAGDPTL 343 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIEVCK 398 A +AL +DLN ++A+ LH R E+ A +LGIE Sbjct: 344 PGAFAAALDDDLNVLAALGVLHDHVRAGNIAVDNGETAAAAAAYQSITAMTSVLGIETES 403 Query: 399 E-------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + ++ +E L+ R F +AD IR L G ++ED+ + Sbjct: 404 SPTAPRDGQHSSTVTALVEVLLANRSCARGEGDFVTADRIRGDLARSGIVIEDHSS 459 >gi|258655032|ref|YP_003204188.1| cysteinyl-tRNA synthetase [Nakamurella multipartita DSM 44233] gi|258558257|gb|ACV81199.1| cysteinyl-tRNA synthetase [Nakamurella multipartita DSM 44233] Length = 473 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 252/480 (52%), Gaps = 53/480 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPM-IVFDVLYRLLRY 59 M + + +Y+T R + F+ + P + +Y CG TV HIG+ R IV+DVL R L + Sbjct: 1 MSQSLHLYDTATRSVRPFEPLQPGVVSLYNCGATVQWHPHIGHLRGAGIVYDVLRRWLEF 60 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 E V +VRN+TDIDDKI+ +A + P + + + + F L CL P Sbjct: 61 TGYE--VRHVRNVTDIDDKILTKAAEA--GRPWWE----WATTHERSFDDAYDTLGCLRP 112 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT HIPQ++ +I +I GHAY A ++ F + P+YG S ++IDE G Sbjct: 113 SVEPRATGHIPQILEMIAALIEAGHAYAAAGDVYFAVRTQPDYGFLSGQRIDEMVQGET- 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++PADF LWK + P EP W+SPWGRGRPGWHIECSAM+ YLG FDIHGGGLD Sbjct: 172 -EAGGKRDPADFTLWKAAKPGEPSWDSPWGRGRPGWHIECSAMARAYLGTEFDIHGGGLD 230 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENE AQS + A W+H+ ++ + G KMSKS GN +++ + E + Sbjct: 231 LIFPHHENEAAQSHGLGDV--FARYWMHSHWVTMAGEKMSKSLGNILSVPTITEKVR--- 285 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSK------G 345 PV +R ++ HYR I+++ + L +A E L + + + G Sbjct: 286 -----PVALRYYLISVHYRSSIEYSQEALDDAAKAYERIEAFLHRAADRAGAGADGVPIG 340 Query: 346 IIDPAVLSALYNDLNTVSAIQALHK--------LAR-ESTKNHDLLPIFNASAHILGIEV 396 + A A+ +DL A+ +H+ LAR + +L A +LG++ Sbjct: 341 EVPDAFRQAMNDDLGVPRALAVVHEKVRAGNAALARSDDDAAQELASSVRAMVAVLGLDP 400 Query: 397 ---------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 L + ++ L+ ER + F+ AD IR Q+ + GF +ED K+ Sbjct: 401 WAAPWVERKVDRRLVEATGRLLDGLLAERAQARADRDFARADEIRTQVAAAGFAIEDTKD 460 >gi|219851792|ref|YP_002466224.1| cysteinyl-tRNA synthetase [Methanosphaerula palustris E1-9c] gi|219546051|gb|ACL16501.1| cysteinyl-tRNA synthetase [Methanosphaerula palustris E1-9c] Length = 419 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 163/444 (36%), Positives = 248/444 (55%), Gaps = 32/444 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL R + ++P+ + M+VCGPTVYD++H+G+AR +VFDVL + LR+ K Sbjct: 1 MELYSTLLRTVEPLVTLNPNRVSMFVCGPTVYDYSHLGHARTYVVFDVLAKYLRWT--GK 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITD+DDKII RA E N + ++ + ++++D L + ++ R Sbjct: 59 EVFYLQNITDVDDKIINRANAE------NVSQHDLSRRFEIEYLRDMRALGVDSVSYYAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I ++ +I G AY + F+ + + G S + ++ +R+ ++ Sbjct: 113 ATTHIPEIINQVERLISRGAAYVTEGGVYFNVGTFEHNGELSHQHGTDRV--SRITDET- 169 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DF LWK E W+SPWGRGRPGWHIE +A+S Y G+ +DIHGGGLDLIFPH Sbjct: 170 KQNSLDFALWKLGEFGEYTWDSPWGRGRPGWHIEDTAISEKYFGQQYDIHGGGLDLIFPH 229 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE EIAQ + W+H GFL ++G KMSKS GNFITI + L+T W Sbjct: 230 HEAEIAQMESLEGKHPMVRYWLHTGFLTVKGEKMSKSLGNFITIRDALKT-------WNK 282 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----AVLSALYNDLN 360 V+R +L++HY P+ T + L A L + +P A A+ +DLN Sbjct: 283 DVLRYFILLSHYSSPLQATDEGLDNAARALEHIRAVAQKDTGENPEGRKAFTDAMESDLN 342 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 T +A+ A+ LA + D+L + ILGI +E S + L + R L Sbjct: 343 TPNALAAIQTLA----ASGDILAL-KEFGEILGINFLRE-----TSAPLSILQEIRAELR 392 Query: 421 KMKKFSSADYIRKQLESKGFILED 444 K+F+ AD IR+++ + G + D Sbjct: 393 ANKQFAVADMIRERMVAAGITITD 416 >gi|298490116|ref|YP_003720293.1| cysteinyl-tRNA synthetase ['Nostoc azollae' 0708] gi|298232034|gb|ADI63170.1| cysteinyl-tRNA synthetase ['Nostoc azollae' 0708] Length = 486 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 175/490 (35%), Positives = 247/490 (50%), Gaps = 66/490 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F ++P ++MY CG TVYD+ H+G+AR I++DV+ R L+ + Sbjct: 3 LSIYNTLTRRQEPFTTVEPGKVKMYCCGVTVYDYCHLGHARACIIWDVVRRYLQLIGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RARQE ++ + + Q + +D +RL PR Sbjct: 62 -VRYIQNFTDIDDKILNRARQEKSTM------EAVAERYIQAYFEDMSRLGIKEANEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LI ++ G AY AN ++ + YG S RK+++ ++G RV Sbjct: 115 ATHTMNGIQRLIHDLEHKGFAYPANGDVYYAVQKFDEYGKLSGRKLEDLQLGASERVNIE 174 Query: 180 PEKYHKKN-PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 +Y KK P DF LWK EP WESPWG+GRPGWHIECSAM LG DIH GG Sbjct: 175 DAEYQKKQYPFDFALWKAVKQGEPAWESPWGKGRPGWHIECSAMVRERLGDTIDIHTGGA 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + AN W+HNG + ++G KMSKS GNF TI LL+ Sbjct: 235 DLIFPHHENEIAQSEAVTG-KPLANYWLHNGMVKVDGEKMSKSLGNFTTIRNLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------------------EILLSKWP- 338 R +RL +LM YR+PIDFT + + A ++ +W Sbjct: 289 -RGVDPMALRLFVLMAQYRKPIDFTDEAILAATNGWYTLRQGLLFGYQYGKKLGTGEWGL 347 Query: 339 ---QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------- 382 TS I+ + +D N + + +LA+E + +++ Sbjct: 348 GIRNNLTSNTYIE-RFKEVVNDDFNFPGGLAVIFELAKELIREKNIIVHQGKTETPPDKL 406 Query: 383 ----PIFNASAHILG----IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 A +LG +E+ + IE L+Q+R K K F+ +D IR Sbjct: 407 LQEWQTLVTLADVLGLTAQLEIETISEDALTDAEIEDLIQKRQEARKGKNFAESDCIRDD 466 Query: 435 LESKGFILED 444 L SKG L D Sbjct: 467 LLSKGITLID 476 >gi|298480481|ref|ZP_06998678.1| cysteine--tRNA ligase [Bacteroides sp. D22] gi|298273302|gb|EFI14866.1| cysteine--tRNA ligase [Bacteroides sp. D22] Length = 493 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPSITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFNGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P +TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPAPATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKELKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|265764886|ref|ZP_06093161.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_16] gi|263254270|gb|EEZ25704.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_16] Length = 491 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 260/493 (52%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RY 59 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L R Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTRL 60 Query: 60 YYGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 Y V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 GYK---VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHK 111 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 L L P+ +P A+ HI + I L++ I+ G+AYE+ + FD + +YG S Sbjct: 112 AMEALNVLPPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDYHYGKLS 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R +D+ TR + + K NPADF LWKR+ P W SPWG G PGWH EC+AM Sbjct: 172 GRNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGR 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GN Sbjct: 232 KYLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGN 290 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 FIT+NE + K +++ IR +L HYR P+DF+ + L AE +S+ + S Sbjct: 291 FITLNEFFSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGMSRLMEAVDS 350 Query: 344 KGIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLL 382 I PA S A+ +DLNT I L +A +T + D L Sbjct: 351 LEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDL 410 Query: 383 PIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ++ KE + + ++ L+++R+ K ++++D IR + Sbjct: 411 KNLKEVFHTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTALGFEIKDTKD 483 >gi|29348760|ref|NP_812263.1| cysteinyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482] gi|253568897|ref|ZP_04846307.1| cysteinyl-tRNA synthetase [Bacteroides sp. 1_1_6] gi|298387124|ref|ZP_06996678.1| cysteine--tRNA ligase [Bacteroides sp. 1_1_14] gi|61216345|sp|Q8A2F4|SYC_BACTN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29340666|gb|AAO78457.1| cysteinyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482] gi|251840916|gb|EES68997.1| cysteinyl-tRNA synthetase [Bacteroides sp. 1_1_6] gi|298260274|gb|EFI03144.1| cysteine--tRNA ligase [Bacteroides sp. 1_1_14] Length = 493 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEELE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA-EIL 333 IT++E T K +++ IR +L HYR +DF+ +QRL EA E L Sbjct: 292 ITLDEFFNGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLIEAIEGL 351 Query: 334 LSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 P +TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPAATTSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNINAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFCFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEVKDTKD 485 >gi|237716747|ref|ZP_04547228.1| cysteinyl-tRNA synthetase [Bacteroides sp. D1] gi|262405523|ref|ZP_06082073.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_22] gi|294646338|ref|ZP_06723985.1| cysteine--tRNA ligase [Bacteroides ovatus SD CC 2a] gi|294806673|ref|ZP_06765504.1| cysteine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b] gi|229442730|gb|EEO48521.1| cysteinyl-tRNA synthetase [Bacteroides sp. D1] gi|262356398|gb|EEZ05488.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_22] gi|292638293|gb|EFF56664.1| cysteine--tRNA ligase [Bacteroides ovatus SD CC 2a] gi|294446093|gb|EFG14729.1| cysteine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b] Length = 493 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPSITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFNGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLIEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P +TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPAPATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKELKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|295086168|emb|CBK67691.1| cysteinyl-tRNA synthetase [Bacteroides xylanisolvens XB1A] Length = 493 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPSITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFTGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P +TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITPAPATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKELKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|291297887|ref|YP_003509165.1| cysteinyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728] gi|290567107|gb|ADD40072.1| cysteinyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728] Length = 480 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 167/487 (34%), Positives = 257/487 (52%), Gaps = 55/487 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T RK+ +F P + +Y+CG T+ HIG+ R + +D++ ++ + Sbjct: 2 SLRLYDTGTRKVRDFVPRVPGKVSIYLCGLTLQGPPHIGHLRNGVNYDIMCSWFQHRGLD 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN+TDI+DK++ ++R++ + I+ +N ++ D L PT++P Sbjct: 62 --VTYVRNVTDIEDKVLAKSREQ------DRPWWAISFENERRLAADYEALGVRPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT H+P+M+ LI +I GHAY N ++ F S P YG+ S RK ++ E Sbjct: 114 RATGHVPEMMDLIAELINKGHAYAPGNGDVYFSVESYPEYGALSHRKPEDMLCPDDGDES 173 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF LWK + P EP W +P+GRGRPGWH+ECSAMS YLG FDIHGGG D Sbjct: 174 V-KRDPRDFALWKAAKPGEPADSSWNTPYGRGRPGWHLECSAMSRRYLGDAFDIHGGGTD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE+AQS A ++ T N W+HN +NL G KMSKS GN +++ L G Sbjct: 233 LMFPHHENELAQSRAAG-LDFT-NFWVHNNMVNLSGTKMSKSLGNVLSVEAL------GE 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLS----KWPQTSTSKGIID 348 R + IR + HYR ID++ LTE+ E +S ++ +T G + Sbjct: 285 RGFRPVEIRYYLAAPHYRSVIDYSDAILTESATSYRRLENFVSRAAERFGHDATEGGALC 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGI-------- 394 +AL +D T +A A+H++ RE D + +LG+ Sbjct: 345 ADFTAALDDDFGTPAAFAAIHEVTREGNAALDSSDDAAARGAAASVRAMLGVLNLDPLSR 404 Query: 395 ---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 E + L + + ++++R K K +++AD IR QL G ++ED G Sbjct: 405 QWTETGGDDLTPVVDSLVNLVLEQRQQARKNKDYATADAIRDQLSRAGLVIED------G 458 Query: 452 QRMTRWK 458 + +RW Sbjct: 459 PQGSRWS 465 >gi|162316926|ref|YP_001102717.2| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|187631653|sp|A4F6W7|SYC_SACEN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 464 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 56/479 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +++T R + EF +YVCG TV HIG+ R + +DVL R L + Sbjct: 2 SLHLHDTATRTMREFHPRLAGVASIYVCGATVQGVPHIGHVRGGLNYDVLRRWL--VHNG 59 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V VRN+TDIDDKI+ +A P + + + + F RL CL P+ P Sbjct: 60 YDVRLVRNVTDIDDKILTKAADA--GRPWWE----WATAHERAFESAFDRLGCLPPSALP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRRKIDEQKMGTRVPEK 182 RAT HI QMI L+Q +I GHAY A ++ F +S +YG S +++DE + G Sbjct: 114 RATGHITQMIELMQRLIDKGHAYAAGGDVYFSVASYAEHYGRLSGQRLDEVQQGESTASG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W +PWG GRPGWH+ECSAMS++YLG FDIHGGGLDL+F Sbjct: 174 --KRDPRDFTLWKAAKPGEPSWPTPWGDGRPGWHLECSAMSTYYLGSEFDIHGGGLDLVF 231 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS A + A W+HN ++ + G KMSKS GN + I +L+ Sbjct: 232 PHHENELAQSTAAG--DGFARYWMHNAWVTMSGEKMSKSLGNTVAIPAILQRAA------ 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTS--TSKGIIDPAVLS 353 AP IR ++ HYR I+++ L EA + +++ Q + G + + Sbjct: 284 -APEIRYYLVAPHYRSTIEYSEPALAEAISAYRRIDSFVNRVRQRTGEVGHGTVPAEFAA 342 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD----------------------LLPIFNASAHI 391 A+ +DL+T AI +H RES D L P+ A Sbjct: 343 AMDDDLSTPQAIAVVHNAIRESNAALDRGDDRAANEAAASVRTMTDILGLDPLSEQWADT 402 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 G + H +S + ++Q+R + F++AD +R +L++ G +ED PD Sbjct: 403 RGADDAAHHA---LSELVGSMLQQRQQARAERDFATADAVRDRLQACGIAVED--TPDG 456 >gi|302870248|ref|YP_003838885.1| cysteinyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029] gi|315503473|ref|YP_004082360.1| cysteinyl-tRNA synthetase [Micromonospora sp. L5] gi|302573107|gb|ADL49309.1| cysteinyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029] gi|315410092|gb|ADU08209.1| cysteinyl-tRNA synthetase [Micromonospora sp. L5] Length = 471 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 174/479 (36%), Positives = 255/479 (53%), Gaps = 62/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + +F + + +Y+CG T+ HIG+ R + +DVL R L E Sbjct: 3 LRLYDTATRSVRDFVPREAGKVGVYLCGLTLQAPPHIGHLRSGVNYDVLRRWLLSKGFE- 61 Query: 65 CVTYVRNITDIDDKIIERA-RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDK++ +A Q+ P I N Q L L PT++P Sbjct: 62 -VTFIRNLTDIDDKVLAKAMEQDRP-------FWSIAYANEQILTTSYRALNVLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT H+P+M LI +I GHAY A + ++ FD +S P YGS S + + + P Sbjct: 114 RATGHVPEMHELIARLIETGHAYPATDGSGDVYFDVASWPAYGSLSGQSPADMQPAGDAP 173 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 ++ K++P DF LWK + P EP W SPWGRGRPGWHIECSAM YLG FDIHGGG Sbjct: 174 DR-GKRDPRDFALWKGAKPGEPADAYWPSPWGRGRPGWHIECSAMCWRYLGPEFDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDL FPHHENEIAQS AD A W+H+G L + G KM KS GN + ++ + Sbjct: 233 LDLTFPHHENEIAQSQAADL--PFARYWVHHGLLGIGGTKMGKSLGNTLDLDYV---AAL 287 Query: 298 GGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEIL---LSKWPQTSTSK------GII 347 G R PV +R + HYR ID++ L EA + + + Q + + G + Sbjct: 288 GVR----PVELRYYYVAAHYRSRIDYSEDALREAAVAYRRIEGFVQRAAERVGPGRPGDL 343 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARES----TKNHDL-----LPIFNASAHILGIEV-- 396 ++A+ +DLNT +A+ ALH++ R+ T D+ L A ILG++ Sbjct: 344 PAGFVAAMDDDLNTSAALAALHEVVRDGNTALTAGDDVTVRTTLAATRAMLDILGVDPLD 403 Query: 397 -----------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ I++A+E+ Q R K +++AD +R QL+ G ++ED Sbjct: 404 PAWTGGGRTDDLRGVVDSLIALALEQRAQAR----SRKDWAAADAVRDQLKQAGVVVED 458 >gi|269976318|ref|ZP_06183314.1| cysteinyl-tRNA synthetase [Mobiluncus mulieris 28-1] gi|269935647|gb|EEZ92185.1| cysteinyl-tRNA synthetase [Mobiluncus mulieris 28-1] Length = 538 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/341 (42%), Positives = 200/341 (58%), Gaps = 26/341 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ + EF+ + P + +Y+CGPTV H+G+ R + FDVL R LR E Sbjct: 1 MKLYDSATHAVREFKPLTPGKVGLYLCGPTVQGAPHLGHLRAALDFDVLVRWLRRSGLE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI++++R+ + + + ++F L + P P Sbjct: 60 -VTYVRNVTDIDDKILKKSRE------LGVPWWALAAHFEREFDWAYRALNTVPPDVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-----DEQKMGTR 178 AT HIPQ I L+Q ++ GHAY + + F S+P+YGS + +++ E Sbjct: 113 ATGHIPQQIALVQRLLDRGHAYADTAGNVYFAVKSLPDYGSLTNQRVADLATTEDAAQID 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + K++P DF LWK + P EP W++PWGRGRPGWH+ECSAMS YLG FDIHG Sbjct: 173 AATESGKRDPRDFALWKAAKPEEPADAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDIHG 232 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDL FPHHENE AQS A A +W+HN +L L+G KMSKS GN + + LL Sbjct: 233 GGLDLRFPHHENEQAQSHGAGW--GFARLWMHNAWLTLKGEKMSKSVGNVVGVRRLLG-- 288 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 WPAPV+RLA++ THYR ++F+ L +A L K Sbjct: 289 -----KWPAPVVRLAVIATHYRTNLEFSEDTLVQAAGLWDK 324 >gi|70605996|ref|YP_254866.1| cysteinyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639] gi|76363434|sp|Q4JCA6|SYC_SULAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68566644|gb|AAY79573.1| cysteinyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639] Length = 469 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 176/492 (35%), Positives = 253/492 (51%), Gaps = 66/492 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+I F++ DP ++MYVCGPTVYD+ HIG+ R + FD + R L+ Sbjct: 4 LRLYNTLGRRIETFESFDPLTVKMYVCGPTVYDYVHIGHGRAFVGFDGIVRYLKL--RGF 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V+NITDIDDKII+RA + I T+ +++ L H PR Sbjct: 62 NVIRVQNITDIDDKIIKRANE------TGKDWREIVDYYTKDYMESLKALKVEIDQH-PR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+HI ++I +Q ++ GHAY ++ + FD S P+YG S K +E G + ++ Sbjct: 115 VTSHIQEIIDFVQKLVDKGHAYITSSGSVYFDVDSFPSYGLLSGSKKEEWNQGEEIVKE- 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG+ FDIHGGG+DL+FP Sbjct: 174 -KKNPYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSTRYLGEQFDIHGGGVDLVFP 232 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENE AQS +I W+H +L + KMSKS GN I +NE L + W Sbjct: 233 HHENERAQSESLLGKI--WVKYWVHVAYLTINKEKMSKSLGNIIPLNEAL-------KKW 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILL---------------------SKWPQTS 341 V+R L T YR ID++ Q L +A L S + S Sbjct: 284 GPSVLRFWYLSTKYRNSIDYSEQTLEQARSSLQRLKDAMGIIRSVIKEEPKSHSNEEEIS 343 Query: 342 TSKGIID--PAVLSALYNDLNTVSAIQALHKLAR------ESTKN-------HDLLPIFN 386 T + II A+ ND +T +A+ ++++A + T++ D FN Sbjct: 344 TQREIISLIGKFHEAMSNDFDTATALSNIYEIANLVFTKIQYTRDFMGAMLAFDAFRQFN 403 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ E + + + I+ +V+ R IL K + +D IR L + G + D Sbjct: 404 YVFGVMDEEFSPSY--ETMYKVIDSVVEIRNILRARKMYDLSDEIRSVLANAGIKILD-- 459 Query: 447 NPDNGQRMTRWK 458 G+ + W+ Sbjct: 460 ----GKEKSTWR 467 >gi|15922576|ref|NP_378245.1| cysteinyl-tRNA synthetase [Sulfolobus tokodaii str. 7] gi|21264015|sp|Q96YC3|SYC_SULTO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15623366|dbj|BAB67354.1| 471aa long hypothetical cysteinyl-tRNA synthetase [Sulfolobus tokodaii str. 7] Length = 471 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/484 (37%), Positives = 247/484 (51%), Gaps = 64/484 (13%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I+IYNTL RKI + ++P ++MYVCGPTVYD+ HIG+ R + FD + R LR Sbjct: 5 QIRIYNTLGRKIQPLETVEPQTVKMYVCGPTVYDYLHIGHGRTFVSFDAMVRYLRL--RG 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V V+NITDIDDKII++A++ + I T+ ++ T+L H P Sbjct: 63 YNVIRVQNITDIDDKIIKKAQE------TGKDWTEIVDFYTKDYLNALTQLKIEIDQH-P 115 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R T HI ++I IQ +I GHAY A + + FD S P+YG S K +E G ++ Sbjct: 116 RVTYHIKEIINFIQKLIDKGHAYVAKSGSVYFDVDSFPSYGLLSGTKKEEWNQGEEFVKE 175 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK P EP WESPWG+GRPGWHIECS MS YLG+ FDIHGGG+DLIF Sbjct: 176 --KKNPYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSMRYLGEEFDIHGGGIDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS A ++ W+H +L + KMSKS GN I +NE L + W Sbjct: 234 PHHENERAQS-EALLGKQWVKYWVHVSYLTIRKEKMSKSLGNIIPLNEAL-------KKW 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILL---------------------SKWPQTS 341 V+R L +HYR +DF L +A+ L SK Sbjct: 286 GPSVLRYWYLSSHYRSSLDFNEDSLEQAKNALTRLKDAISIIRDVIKEGPKYYSKDEDIQ 345 Query: 342 TSKGIID--PAVLSALYNDLNTVSAIQALHKLAR-------------ESTKNHDLLPIFN 386 + I++ + +A+ D +T A+ +H++ + D L FN Sbjct: 346 VQRNIVELIKSFHAAMSEDFDTAKALSYIHEIVSLVFGKIQYSRDFMSAMLAFDALRQFN 405 Query: 387 ASAHILGIEV--CKEHLNKNISIAIEKLVQERLILLKMKK-FSSADYIRKQLESKGFILE 443 ++ E E L K I +E Q L+MKK + +D IR L + G + Sbjct: 406 YVFGVMDEEFYPTYEMLGKVIDAVVEIRNQ-----LRMKKMYDLSDQIRAILANAGVKVL 460 Query: 444 DYKN 447 D K+ Sbjct: 461 DSKD 464 >gi|308176323|ref|YP_003915729.1| cysteine--tRNA ligase [Arthrobacter arilaitensis Re117] gi|307743786|emb|CBT74758.1| cysteine--tRNA ligase [Arthrobacter arilaitensis Re117] Length = 483 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 176/494 (35%), Positives = 248/494 (50%), Gaps = 57/494 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ Y+T + +FQ + +++Y CG TV H+G+ R IVFDVL R L Y Sbjct: 2 SLRFYDTKTASVRDFQPLAEGEVKLYYCGATVQGMPHVGHVRSAIVFDVLVRWLEYR--G 59 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDA-------ISIITSKNTQQFVKDTTRLAC 116 VT VRN+TDIDDKI+E++ DA + + Q+F + L Sbjct: 60 FAVTTVRNVTDIDDKILEKSANSFAEDFEADAHYRPREEWYALAYRFEQEFARAYEALGV 119 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQ 173 PT++PRAT HI +M LI +I GHAY A + ++ FD S YG+ +R+KID+ Sbjct: 120 RRPTYEPRATGHITEMHELISQLIERGHAYPAADDSGDVYFDVRSYEQYGALTRQKIDDM 179 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKV 230 + + KK+P DF LWK ++P W SPWGRGRPGWH+ECSAM+ YLG Sbjct: 180 QDAPDSDPR-GKKDPRDFALWKGLKDIDPPTASWPSPWGRGRPGWHLECSAMAGKYLGSE 238 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDL FPHHENE+AQS A AN W+HNG + EG KMSKS GN I+ E Sbjct: 239 FDIHGGGLDLRFPHHENEMAQSNAAG--HGFANFWMHNGMVTYEGEKMSKSIGNTISPEE 296 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------W 337 +L A V+R + YR +D+ LTEA + + Sbjct: 297 MLALAD-------ARVVRYFLGQAQYRSMLDYRPDSLTEAGAAVERIDTFISNARYRLGA 349 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNAS 388 + + + A +A+ +DLN A+ ALH+ R + D L A Sbjct: 350 AAEAIAATEVPEAFGTAMDDDLNVPMALAALHETVRLGNASRDSRDDAATAKALGQVLAM 409 Query: 389 AHILGIEVCKEHLNKNIS---IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFI 441 +LG++ H +++ S A+++LVQ +L K ++ +D IR L S G Sbjct: 410 TQVLGLDDAGSHESQDSSAEHAALDQLVQAQLAERAKARAAKDWARSDAIRDALGSAGIT 469 Query: 442 LEDYKNPDNGQRMT 455 + D +G R T Sbjct: 470 VADSA---DGARWT 480 >gi|186684074|ref|YP_001867270.1| cysteinyl-tRNA synthetase [Nostoc punctiforme PCC 73102] gi|186466526|gb|ACC82327.1| cysteinyl-tRNA synthetase [Nostoc punctiforme PCC 73102] Length = 524 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 182/517 (35%), Positives = 252/517 (48%), Gaps = 85/517 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ ++ ++MY CG TVYD+ H+G+AR IV+DV+ R L++ E Sbjct: 26 LTLYNTLTRRQEPFETVEAGKVKMYYCGVTVYDYCHLGHARACIVWDVVRRYLQFIGYE- 84 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKI+ RA EH S+ + ++ + + +D RL PR Sbjct: 85 -VRYIQNFTDIDDKILNRACVEHSSM------EAVANRFIKAYFEDMARLGIREADEYPR 137 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG--TRV--- 179 AT+ + + LI + G AY A+ ++ + YG S RK+++ + G RV Sbjct: 138 ATHTMNGIQRLIHELEKKGFAYPADGDVYYAVRQFAEYGKLSGRKLEDMQAGKSERVNVE 197 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KK+P DF LWK + P E WESPWG GRPGWHIECSAM LG DIH GG Sbjct: 198 DPEYQKKKDPFDFALWKAAKPGETAWESPWGAGRPGWHIECSAMVRDRLGDTIDIHAGGA 257 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + A W+HNG + ++G KMSKS GNFITI ELL+ Sbjct: 258 DLIFPHHENEIAQSEAVTG-KPLARYWLHNGMVKVDGEKMSKSLGNFITIRELLD----- 311 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLS--------KWPQTST 342 R +RL +L YR PIDFT + + A E LL W + Sbjct: 312 -RGVNPMAVRLFVLTAQYRTPIDFTDEAIAAATNGWHTIKEGLLFGYQYGEKLGWDLGTG 370 Query: 343 SKGIIDPAVLSA------------LY---------NDLNTVSAIQALHKLARESTKNHDL 381 G+ S LY ND N + L +LA+E + + Sbjct: 371 DLGLGTEEEFSQSPIPNPQYPVPNLYVERFQEIVNNDFNFPGGLTVLFELAKELRREGHI 430 Query: 382 L-----------------PIFNASAHILG----IEVCKEHLNKNISIAIEKLVQERLILL 420 L A +LG IE + +N IE +Q+R Sbjct: 431 LVHEGKTETSPDKLKHQWQTLVTLAGVLGLEAEIEAETDKINGLSDAEIEAKIQQRQEAR 490 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + K F+ +D IR +L+++G L D ++ TRW Sbjct: 491 QGKNFAESDRIRDELQAEGITLIDSRDG------TRW 521 >gi|260172516|ref|ZP_05758928.1| cysteinyl-tRNA synthetase [Bacteroides sp. D2] gi|315920809|ref|ZP_07917049.1| cysteinyl-tRNA synthetase [Bacteroides sp. D2] gi|313694684|gb|EFS31519.1| cysteinyl-tRNA synthetase [Bacteroides sp. D2] Length = 493 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFIPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLSHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEELE-PME-----VVQYFLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFTGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SKWPQTS-TSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K +S TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 DKITSSSATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|149926799|ref|ZP_01915058.1| cysteinyl-tRNA synthetase [Limnobacter sp. MED105] gi|149824351|gb|EDM83569.1| cysteinyl-tRNA synthetase [Limnobacter sp. MED105] Length = 441 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 171/467 (36%), Positives = 238/467 (50%), Gaps = 62/467 (13%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYDF H+G+AR M+VFD+L R LR VTYVRNITDIDDKII RA Sbjct: 1 MYVCGMTVYDFCHLGHARVMVVFDLLKRWLRA--SGYPVTYVRNITDIDDKIIRRA---- 54 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + ++I +T + +D L P H+PRAT ++ +M +IQ ++ AY Sbjct: 55 --VENGESIRSLTDRFIAAMHEDADALGIERPDHEPRATEYVAEMQDMIQTLMNKRLAYR 112 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG--- 203 + + ++ F + P YG S + +DE + G RV K +P DF+LWK + EP Sbjct: 113 DDSGDVNFAVRAFPEYGRLSGKSLDELRAGERVGVSGSKNDPLDFVLWKSAKADEPADAK 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W+S +G GRPGWHIECSAMS LG FDIHGGG DL FPHHENEIAQS A E A Sbjct: 173 WDSDFGVGRPGWHIECSAMSCKLLGNTFDIHGGGADLQFPHHENEIAQSVGATG-EGFAQ 231 Query: 264 IWIHNGFLNLE----GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 W+HNGF+ +E KMSKS NF TI ++L+ + A V+R +L YR Sbjct: 232 YWMHNGFVRVETNGQSEKMSKSLNNFFTIRDILKV-------YDAEVVRFFILRAQYRSQ 284 Query: 320 IDFTVQRLTEAEILLSK---------------WPQTSTSKGIIDPAVLSALYNDLNTVSA 364 + ++ + +A+ L + W Q ++ A+ +D+NT A Sbjct: 285 LTYSEAHVQDAKAALGRLYTAVGDVQVAQSIDWTQEFEAR------FAEAMNDDMNTPIA 338 Query: 365 IQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHLNKNISIA----------IEKL 412 + L ++A E + D L A A +LG+ + + I+ L Sbjct: 339 VSVLFEMANEVNRTADQTLAARLKALAQVLGLLGRTAEAFQKAEVGDQAGALDEAEIQAL 398 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + R + FS AD IR+QL G +LED + T W++ Sbjct: 399 IDARAQAKADRDFSKADAIRQQLLDMGVVLEDKRGG-----ATEWRR 440 >gi|153807261|ref|ZP_01959929.1| hypothetical protein BACCAC_01539 [Bacteroides caccae ATCC 43185] gi|149130381|gb|EDM21591.1| hypothetical protein BACCAC_01539 [Bacteroides caccae ATCC 43185] Length = 493 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 266/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEELE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIQLVQKILDAGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFNGTHKLLTQAYTPMTIRFFILQAHYRSTVDFSNEALIASEKGLQRLIEAIDGL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P ++TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 GKVTPASATSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNVIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S + ++ L+++R+ K ++++D IR Sbjct: 412 LKELKETFHLFCFDIMGLKEEKGSSDSRENAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|53711487|ref|YP_097479.1| cysteinyl-tRNA synthetase [Bacteroides fragilis YCH46] gi|61216162|sp|Q64ZY1|SYC_BACFR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52214352|dbj|BAD46945.1| cysteinyl-tRNA synthetase [Bacteroides fragilis YCH46] Length = 491 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 260/493 (52%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RY 59 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L R Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTRL 60 Query: 60 YYGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 Y V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 GYK---VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHK 111 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 L L P+ +P A+ HI + I L++ I+ G+AYE+ + FD + +YG S Sbjct: 112 AMEALNVLPPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDHHYGKLS 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R +D+ TR + + K NPADF LWKR+ P W SPWG G PGWH EC+AM Sbjct: 172 GRNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGR 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GN Sbjct: 232 KYLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGN 290 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 FIT++E + K +++ IR +L HYR P+DF+ + L AE LS+ + S Sbjct: 291 FITLDEFFSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGLSRLMEAVDS 350 Query: 344 KGIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLL 382 I PA S A+ +DLNT I L +A +T + D L Sbjct: 351 LEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDL 410 Query: 383 PIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ++ KE + + ++ L+++R+ K ++++D IR + Sbjct: 411 KDLKEVFHTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTALGFEIKDTKD 483 >gi|297526293|ref|YP_003668317.1| cysteinyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710] gi|297255209|gb|ADI31418.1| cysteinyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710] Length = 480 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 182/484 (37%), Positives = 243/484 (50%), Gaps = 63/484 (13%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL--YRLLRYYY 61 +IK+YNTL RKI EF+ + P ++MYVCGPTVYD+ HIG+ R +V+D L Y LR Y+ Sbjct: 6 EIKLYNTLTRKIEEFKPVSPGFVKMYVCGPTVYDYNHIGHGRVYVVYDALKRYFALRGYH 65 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V +V NITDIDDKII RA +E + T+ +++ +L H Sbjct: 66 ----VIHVMNITDIDDKIINRANREKRDW------REVAETYTRDYLESLRKLNVKVDLH 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PR T HI ++I IQ +I G+AY A + + F+ P YG S R +++ ++ Sbjct: 116 -PRVTEHIKEIIEFIQTLIDKGYAYIAPSGSVYFEVDKYPEYGELSGRT--NKELWSQEK 172 Query: 181 EKY-HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E KK P DF LWK P EP WE+PWGRGRPGWHIECS MSS YLGK FDIHGGG D Sbjct: 173 EFISEKKKPYDFALWKAWKPGEPYWEAPWGRGRPGWHIECSVMSSRYLGKQFDIHGGGTD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENE AQS A ++ W+H G + + KMSKS GN I + E Sbjct: 233 LIFPHHENERAQSEAAFGVKPWVKYWVHTGMVMMGSEKMSKSLGNIIPLREAF------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAV------- 351 + W +RL L +HYR P+ FT + + + + + T+T K + AV Sbjct: 286 KEWGPETLRLWYLTSHYRRPLVFTEESIKQTQKYYERLVSVTNTIKKLSREAVGLHRMND 345 Query: 352 ----------------LSALYNDLNTVSAIQALHKLARESTKN-------------HDLL 382 AL ND NT A+ + + K + LL Sbjct: 346 EDLKILDKLLEIRSRFHEALSNDFNTPQALAVISEFMTLVFKEIQYNPKYMLVLTAYKLL 405 Query: 383 PIFNASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 FN +L + + E L + I +V R L + K + AD IR +L G Sbjct: 406 REFNIVLGVLDKYLAETPEELETLLDNVINIVVDIRRELRERKLYDLADRIRAELGKHGI 465 Query: 441 ILED 444 IL D Sbjct: 466 ILMD 469 >gi|60679757|ref|YP_209901.1| cysteinyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] gi|81317170|sp|Q5LIT7|SYC_BACFN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|60491191|emb|CAH05939.1| putative cysteinyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] Length = 491 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 260/493 (52%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RY 59 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L R Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTRL 60 Query: 60 YYGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 Y V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 GYK---VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHK 111 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 L L P+ +P A+ HI + I L++ I+ G+AYE+ + FD + +YG S Sbjct: 112 AMEALNVLPPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDYHYGKLS 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R +D+ TR + + K NPADF LWKR+ P W SPWG G PGWH EC+AM Sbjct: 172 GRNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGR 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GN Sbjct: 232 KYLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGN 290 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 FIT++E + K +++ IR +L HYR P+DF+ + L AE LS+ + S Sbjct: 291 FITLDEFFSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGLSRLMEAVDS 350 Query: 344 KGIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLL 382 I PA S A+ +DLNT I L +A +T + D L Sbjct: 351 LEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDL 410 Query: 383 PIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ++ KE + + ++ L+++R+ K ++++D IR + Sbjct: 411 KDLKEVFHTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTALGFEIKDTKD 483 >gi|116495760|ref|YP_807494.1| cysteinyl-tRNA synthetase [Lactobacillus casei ATCC 334] gi|301067316|ref|YP_003789339.1| cysteinyl-tRNA synthetase [Lactobacillus casei str. Zhang] gi|116105910|gb|ABJ71052.1| cysteinyl-tRNA synthetase [Lactobacillus casei ATCC 334] gi|300439723|gb|ADK19489.1| Cysteinyl-tRNA synthetase [Lactobacillus casei str. Zhang] Length = 444 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 250/469 (53%), Gaps = 61/469 (13%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNAR I FD + R Y G K VTYV N TD+DDKII A + Sbjct: 1 MYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR-GYK-VTYVSNFTDVDDKIINAAHKTG 58 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + P++ A I + F++DTT L T PRA+ IP +I +Q++I +AY Sbjct: 59 EA-PLDLAQRFIDA-----FMEDTTALGIEPATAHPRASQMIPDIIEFVQDLIDKEYAYA 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----PEKYHKKNPADFILWKRSTPMEPG 203 + ++ + +YG S + +DE + G E K++P DF LWK + P E Sbjct: 113 VDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQDELAKKEDPIDFALWKAAKPGEIS 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 WESPWG+GRPGWHIECS MS+ LG FDIHGGG DL FPHHENEIAQS A ++ Sbjct: 173 WESPWGKGRPGWHIECSVMSTKLLGDTFDIHGGGQDLEFPHHENEIAQS-EAKTDKQFVR 231 Query: 264 IWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 W+HNGF+ + + KMSKS GNFIT++++ +T V+R M T YR PI Sbjct: 232 YWMHNGFVTIGEDDEKMSKSLGNFITVHDIRKTVD-------PQVLRFFMAGTQYRMPIR 284 Query: 322 FTVQRLTEAEILLSKW-------------------PQTSTSKGIIDPAVLSALYNDLNTV 362 ++ L A L++ PQ + + ++A+ +D+N Sbjct: 285 YSETNLKNAANSLNRLKIARENLTYRRRGAETGVDPQITKQLQTLKDRFVTAMDDDINVQ 344 Query: 363 SAIQALHKLAR--------ESTKN---HDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 + + L LA+ E+ K+ +DLL ++A I G+ + K++ I+ Sbjct: 345 NGLTVLFDLAKLLNEYANEETVKSESINDLLNEYDAWLQIFGVVFADQ---KSLDADIDA 401 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 LV+ R K F+ +D IR QL ++G ILED P + TRW+++ Sbjct: 402 LVKARDAARAAKDFAKSDQIRDQLAAQGIILED--TP----QGTRWRRQ 444 >gi|318058498|ref|ZP_07977221.1| cysteinyl-tRNA synthetase [Streptomyces sp. SA3_actG] gi|318079336|ref|ZP_07986668.1| cysteinyl-tRNA synthetase [Streptomyces sp. SA3_actF] Length = 466 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 244/477 (51%), Gaps = 62/477 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T R+I +F + P + +Y+CG TV HIG+ R + FD++ R Y E Sbjct: 3 IRLYDTRARQIRDFFPLVPGCVSIYLCGATVQGAPHIGHIRSGLDFDIMRRWFTYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKII + A Q P I +N + F L CL PT++P Sbjct: 62 -VVFVRNVTDIDDKIINKSAEQGRPWWAIG-------YENERAFNAAYDALGCLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +MI +++ +I GHAYE+ + FD S Y S +++D + E Sbjct: 114 RATGHITEMIEMMRTLIARGHAYESGGNVYFDVRSFLEYLELSHQELDNLLQPSGEGET- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF +WK + P EP WE+PWGRGRPGWH+ECSAM+ YLG FD+HGGGLDLIFP Sbjct: 173 GKRDSRDFAMWKAAKPGEPSWETPWGRGRPGWHLECSAMAHKYLGAAFDVHGGGLDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS ++ A W+HN ++ + G KMSKS GN + ++E++ + W Sbjct: 233 HHENEIAQSKAYG--DEFAKYWVHNAWVTMSGEKMSKSLGNSVLVSEMV-------KRWR 283 Query: 304 APVIRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQTSTSKGI 346 V+R + HYR I+++ VQR+TE L+ ++ Sbjct: 284 PIVLRYYLATPHYRSMIEYSEEAVAEAESAFGRIEGFVQRVTE----LNGGEVAPAAE-- 337 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEVC 397 + PA A+ +DL A+ LH R+ L A +LG++ Sbjct: 338 VPPAFAEAMDDDLGVPQAVAVLHTTVRQGNSALAADDKEAAVARLAEVRAMLGVLGLDPL 397 Query: 398 ----------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L+ + + ++++R K + +AD IR QL G +ED Sbjct: 398 DPQWATGGEQAEDLHGVVDTLVRLVLKQREDARARKDWPAADAIRDQLAQSGLAIED 454 >gi|119960845|ref|YP_946695.1| cysteinyl-tRNA synthetase [Arthrobacter aurescens TC1] gi|166200128|sp|A1R383|SYC_ARTAT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119947704|gb|ABM06615.1| cysteinyl-tRNA synthetase [Arthrobacter aurescens TC1] Length = 484 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 246/484 (50%), Gaps = 58/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T ++ +F ++ +Y CG TV H+G+ R I FD L R L + G + Sbjct: 3 LRFYDTASAEVRDFVPLEDGKASVYYCGATVQGMPHVGHVRSAIAFDQLTRWLEFR-GLR 61 Query: 65 CVTYVRNITDIDDKIIERARQE-------HPSIPINDAISIITSKNTQQFVKDTTRLACL 117 VT VRN+TDIDDKI+ ++ Q PS + + + Q+F L Sbjct: 62 -VTVVRNVTDIDDKILAKSAQSFGPDWDAEPSARQTEEWWALAYRYEQEFENAYESLGVQ 120 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQK 174 PT++PRAT HIP+M LIQ +I GHAY A + ++ FD S YGS +R+ ID+ + Sbjct: 121 RPTYEPRATGHIPEMHTLIQRLIDRGHAYPALDDSGDVYFDVRSWSKYGSLTRQNIDDMQ 180 Query: 175 MGTRVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 G + K++P DF LWK P+ WESPWG GRPGWH+ECSAM + YLG F Sbjct: 181 -GAPDADPRGKRDPRDFALWKGFKDGEPVTAKWESPWGAGRPGWHLECSAMVTKYLGPRF 239 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGGLDL FPHHENE+AQS A ++ AN W+HNG + EG KMSKS GN ++ E+ Sbjct: 240 DIHGGGLDLRFPHHENEMAQSQAAG--DEFANFWMHNGMVTYEGEKMSKSIGNTVSPAEM 297 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----QTSTSKGII 347 LE V+R + HYR +D+ L EA + + + S+ G Sbjct: 298 LELAS-------PRVVRYYLGQAHYRSILDYRPTSLQEAAAAVERIDGFIHKASSKVGTG 350 Query: 348 DP----------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-------- 389 P A ++A+ +DLN A+ LH+ R + A A Sbjct: 351 APDVSPQANMPAAFIAAMDDDLNVPQALGVLHETVRAGNTALASGDLEGAKAALYSVLSM 410 Query: 390 -HILGIEVCK--------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +LG++ K EH + + IE ++ R K ++++D IR L + G Sbjct: 411 TEVLGLDSVKRPEAVQGREH--AALEVLIEAQLEARAAARANKDWAASDAIRDTLAAAGV 468 Query: 441 ILED 444 ++ED Sbjct: 469 VVED 472 >gi|253564451|ref|ZP_04841908.1| cysteinyl-tRNA synthetase [Bacteroides sp. 3_2_5] gi|251948227|gb|EES88509.1| cysteinyl-tRNA synthetase [Bacteroides sp. 3_2_5] gi|301161219|emb|CBW20757.1| putative cysteinyl-tRNA synthetase [Bacteroides fragilis 638R] Length = 491 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 260/493 (52%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RY 59 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L R Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPSITFDVLFRYLTRL 60 Query: 60 YYGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 Y V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 GYK---VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHK 111 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 L L P+ +P A+ HI + I L++ I+ G+AYE+ + FD + +YG S Sbjct: 112 AMEALNVLPPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDYHYGKLS 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R +D+ TR + + K NPADF LWKR+ P W SPWG G PGWH EC+AM Sbjct: 172 GRNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGR 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GN Sbjct: 232 KYLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGN 290 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 FIT++E + K +++ IR +L HYR P+DF+ + L AE LS+ + S Sbjct: 291 FITLDEFFSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGLSRLMEAVDS 350 Query: 344 KGIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLL 382 I PA S A+ +DLNT I L +A +T + D L Sbjct: 351 LEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDL 410 Query: 383 PIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ++ KE + + ++ L+++R+ K ++++D IR + Sbjct: 411 KDLKEVFHTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTALGFEIKDTKD 483 >gi|269926934|ref|YP_003323557.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269790594|gb|ACZ42735.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 453 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/461 (37%), Positives = 247/461 (53%), Gaps = 41/461 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL + EF ++P N+ MYVCGPTVY AHIG+A VFD++ R L Y G K Sbjct: 2 LYIHNTLTDRKEEFIPLNPPNVLMYVCGPTVYGPAHIGHAMSYTVFDIVRRYLEYK-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII R+ +E I D + ++ ++F++ L L + PR Sbjct: 61 -VKHVQNFTDVDDKIIARSNEE--GISWKD----LATRYEREFLRQMDSLNILRAHYYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 A+ IP++I IQ +I G+AY + ++ F YG S R++DE + G R+ Sbjct: 114 ASEVIPEIIEDIQRLIARGYAYVVDGDVYFRVLKDEEYGELSHRRLDEMRAGARIEADPR 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + EP WESPWG GRPGWHIEC+ M+ LG+ DIHGGG DLIFPH Sbjct: 174 KEHPMDFALWKSAKLGEPYWESPWGPGRPGWHIECTTMNLRMLGEQIDIHGGGADLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS WIHNG L LE KM++S GN ++I+ ++ R + A Sbjct: 234 HENEIAQSEAITGKHPFVRYWIHNGLLQLEEEKMARSVGNVLSIDFIV-------RQYGA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI-LLSKWPQTSTSKGIIDPA----------VLS 353 RL +L +HYR+P++F+ + L A+ +L + G PA S Sbjct: 287 DAFRLFVLSSHYRKPLNFSFEALESAKRGVLRLYQAVGEDAG---PAGSEFKDFRQRFES 343 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS 406 A+ +D NT AI L +LAR E + + +LG+ + + + + Sbjct: 344 AMDDDFNTPQAIAVLFELARDVNALRSEGKDASTAAGLLRELSALLGLRL--DSVGGEAT 401 Query: 407 IA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I+ +V R L + + +DYIR +L G + D Sbjct: 402 EAEPFIDLIVGVRDKLRASRIYELSDYIRDKLGELGVSVMD 442 >gi|296126677|ref|YP_003633929.1| cysteinyl-tRNA synthetase [Brachyspira murdochii DSM 12563] gi|296018493|gb|ADG71730.1| cysteinyl-tRNA synthetase [Brachyspira murdochii DSM 12563] Length = 472 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 266/494 (53%), Gaps = 59/494 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR-YYY 61 K+I +YN+L R+ F+ I + MY CGPTVY++AHIGN R + D+L R+L Y Y Sbjct: 2 KEIVLYNSLTREKEVFKPIKEGEVGMYSCGPTVYNYAHIGNFRAYVFSDLLRRVLEDYGY 61 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V V N+TD+DDK I+ +++ H I +N+ T K + F +D L + Sbjct: 62 N---VKLVMNLTDVDDKTIKNSKENH--ISLNE----YTKKYKEAFFEDIKTLGIKKASV 112 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS---RRKIDEQKMGTR 178 P AT+HI +MI +I+ + +GH YEA+ + F S+ P YG + ++++ E G Sbjct: 113 NPAATDHIKEMIDIIELLKKNGHTYEADGSVYFKISTFPQYGELANLDKQELLEGASGRV 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + ++Y K+N +DF+LWK T E G W+SP+G+GRPGWHIECSAMS YLGK FDIH Sbjct: 173 LNDEYDKENASDFVLWKAYTE-EDGDVYWDSPFGKGRPGWHIECSAMSCKYLGKHFDIHT 231 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+D FPHHENEIAQ+ A EK N W+H L ++G KMSKS GNF T+ +LL+ Sbjct: 232 GGVDNKFPHHENEIAQNEAAFN-EKFVNYWLHCEHLIVDGEKMSKSKGNFYTLRDLLD-- 288 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSK- 344 + IR +++ +HYR+ ++FT++ R+ + L +T T++ Sbjct: 289 ----KGLSKEAIRYSLINSHYRKQLNFTIEGIKQSQSAIDRVNDFVFRLKDINKTDTNEI 344 Query: 345 -----GIIDPA---VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 ID A ++YNDLN A+ L L + + + D + I IE Sbjct: 345 NDKLSKEIDEANDKFSDSVYNDLNISEALGVLFTLIKNANTSFDSINNETRDKMIKFIER 404 Query: 397 CKEHLN----------KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +N K+ I KL++ER + K K + AD IR +L S G + D Sbjct: 405 VNNIINCFKINDEEENKDDEEEINKLIEERSLAKKEKNYQKADEIRNKLLSMGIEIMD-- 462 Query: 447 NPDNGQRMTRWKQK 460 P + +WK+K Sbjct: 463 TP----QGVKWKRK 472 >gi|255010223|ref|ZP_05282349.1| cysteinyl-tRNA synthetase [Bacteroides fragilis 3_1_12] gi|313148019|ref|ZP_07810212.1| cysteinyl-tRNA synthetase [Bacteroides fragilis 3_1_12] gi|313136786|gb|EFR54146.1| cysteinyl-tRNA synthetase [Bacteroides fragilis 3_1_12] Length = 491 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 179/493 (36%), Positives = 260/493 (52%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RY 59 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L R Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTRL 60 Query: 60 YYGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 Y V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 GYK---VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHK 111 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 L L+P+ +P A+ HI + I L++ I+ G+AYE+ + FD + +YG S Sbjct: 112 AMEALNVLSPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDYHYGKLS 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R +D+ TR + + K NPADF LWKR+ P W SPWG G PGWH EC+AM Sbjct: 172 GRNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGR 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GN Sbjct: 232 KYLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGN 290 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 FIT++E + K +++ IR +L HYR P+DF+ + L AE LS+ + Sbjct: 291 FITLDEFFSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGLSRLMEAVDG 350 Query: 344 KGIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLL 382 I PA S A+ +DLNT I L +A +T + D L Sbjct: 351 LEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDL 410 Query: 383 PIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ++ KE + + ++ L+++R+ K ++++D IR + Sbjct: 411 KELKEVFHTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTALGFEIKDTKD 483 >gi|255692897|ref|ZP_05416572.1| cysteine--tRNA ligase [Bacteroides finegoldii DSM 17565] gi|260621346|gb|EEX44217.1| cysteine--tRNA ligase [Bacteroides finegoldii DSM 17565] Length = 493 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 263/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L + Sbjct: 1 MEHQLTIYNTLNRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPSITFDVLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIEKKARLEELE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L+Q I+ G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVQKILDAGYAYESEGSVYFDVAKYNKDHHYGRLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQS A + + + W+HN + + G KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLVFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT++E T K +++ IR +L HYR +DF+ +QRL EA L Sbjct: 292 ITLDEFFNGTHKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLMEAIDAL 351 Query: 335 SK-WPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 K P +TS+GI + A+ +DLNT I L + AR +T + + Sbjct: 352 EKITPAATTSEGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNIIAGNATISAED 411 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRK 433 L + H+ ++ K S ++ L+++R+ K ++++D IR Sbjct: 412 LKDLKETFHLFSFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRN 471 Query: 434 QLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 TLTALGFEIKDTKD 485 >gi|283458741|ref|YP_003363379.1| cysteinyl-tRNA synthetase [Rothia mucilaginosa DY-18] gi|283134794|dbj|BAI65559.1| cysteinyl-tRNA synthetase [Rothia mucilaginosa DY-18] Length = 472 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 245/475 (51%), Gaps = 44/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y++ I EF+ + P R+Y CG TV H+G+ R +VFD L R +RY G K Sbjct: 3 MRFYDSASATIREFEPVVPGEARIYYCGATVQGEPHLGHIRSALVFDQLSRWMRYR-GLK 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPI---NDAISIITSKNTQQFVKDTTRLACLAPT 120 VT VRN+TDIDDKI+ + A P N+ + + + F + L PT Sbjct: 62 -VTTVRNVTDIDDKILAKSAESMEPGFEGEFPNEQWWALAYRFEKVFAQAYAALGIDPPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+M LIQ +I GHAY A + ++ FD S YG+ + + +++ + Sbjct: 121 YEPRATGHIPEMFALIQRLIDRGHAYPALDDSGDVYFDVRSWDKYGALTNQSVEDMQDSA 180 Query: 178 RVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK P+ WESPWGRGRPGWH+ECSAM+ YLG FDIH Sbjct: 181 DADPR-GKRDPRDFALWKGYKEGEPLTASWESPWGRGRPGWHLECSAMAGKYLGSRFDIH 239 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGGLDL FPHHENE+AQS A + AN W+HNG + EG KMSKS GN I+ ++L+ Sbjct: 240 GGGLDLRFPHHENELAQSTAAG--DDFANFWMHNGMVTYEGEKMSKSIGNTISPAQMLQM 297 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDP---- 349 + V+R + HYR +D+ L EA + + + ++ ++ P Sbjct: 298 AR-------PLVVRYYLGSAHYRSILDYRPSSLQEAATAIERVEAFLAAAQDVLKPGREV 350 Query: 350 --AVLSALYNDLNTVSAIQALHKLARES----TKNHDLLPIFN---ASAHILGI------ 394 A A+ +D+N A+ LH+ R D N A A +LG+ Sbjct: 351 PEAFAEAMDDDVNIPRALAVLHEQTRAGNAALAAGEDASEAANAVMAMAEVLGLAQLMSF 410 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E ++ + I+ ++ ER K ++ AD +R L S G ++D N Sbjct: 411 NAEGTSGAEHEALDALIQAVLAERADARAQKDWAKADAMRDLLASAGVQVKDGAN 465 >gi|121535688|ref|ZP_01667492.1| cysteinyl-tRNA synthetase [Thermosinus carboxydivorans Nor1] gi|121305719|gb|EAX46657.1| cysteinyl-tRNA synthetase [Thermosinus carboxydivorans Nor1] Length = 370 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 138/326 (42%), Positives = 189/326 (57%), Gaps = 15/326 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL ++ EF +P ++MYVCG T Y+ HIGNARP I +DV+ R L + Sbjct: 3 LRVYNTLTKQKEEFVPREPGKVKMYVCGVTPYNHPHIGNARPFITWDVIRRYLEHR--GF 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII A QE + I ++ + + +L PR Sbjct: 61 AVFHVQNFTDIDDKIINTANQEGVTW------DTIANRYIAAYFEVMDKLNVRRAHVYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HI +I ++Q +I G+AY ++ + YG S R +++ K G R+ Sbjct: 115 VSDHIGDIIAIVQRLIDKGYAYTVGGDVYYSVEKFAPYGQLSGRSLEDMKAGARIDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG GRPGWHIECSAM+ YLG FD HGGG DLIFPH Sbjct: 175 KRHPMDFALWKSAKPGEPAWDSPWGPGRPGWHIECSAMALKYLGNGFDFHGGGSDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS W+HNGF+ + KMSKS GNF + ++L +P Sbjct: 235 HENEIAQSEAYTGEAPFVRYWLHNGFITVNEEKMSKSLGNFFLVKDILA-------HYPP 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA 330 V+R +L THYR P+DF+ +RL EA Sbjct: 288 EVLRFFILSTHYRSPLDFSDERLAEA 313 >gi|311112938|ref|YP_003984160.1| cysteine--tRNA ligase [Rothia dentocariosa ATCC 17931] gi|310944432|gb|ADP40726.1| cysteine--tRNA ligase [Rothia dentocariosa ATCC 17931] Length = 474 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 249/479 (51%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y++ I +F+ + P R+Y CG TV H+G+ R +VFD L R +RY G K Sbjct: 1 MRFYDSATSSIRDFEPVVPGEARIYYCGATVQGEPHVGHIRSALVFDQLARWMRYR-GFK 59 Query: 65 CVTYVRNITDIDDKIIERARQ--------EHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 VT VRN+TDIDDKI+ ++ + EHP N+ + + + F + L Sbjct: 60 -VTTVRNVTDIDDKILAKSVESAQPTYTGEHP----NEQWWALAYRYEKVFARAYATLGI 114 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQ 173 PT++PRAT HIP+M LIQ +I GHAY A + ++ FD S YG+ +R+ +D+ Sbjct: 115 DPPTYEPRATGHIPEMFELIQRLIDRGHAYPALDDSGDVYFDVRSWEQYGALTRQSVDDM 174 Query: 174 KMGTRVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 + + K++P DF LWK P+ W+SPWGRGRPGWH+ECSAM+ YLGK Sbjct: 175 QDSADADPR-GKRDPRDFALWKGYKEGEPLTAAWDSPWGRGRPGWHLECSAMAGKYLGKR 233 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDL FPHHENE+AQS A + AN W+HNG + EG KMSKS GN I+ + Sbjct: 234 FDIHGGGLDLRFPHHENELAQSTAAG--DDFANFWMHNGMVTYEGEKMSKSIGNTISPVQ 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGII- 347 +L+ + V+R + HYR +D+ L EA + + + +TS+ + Sbjct: 292 MLQQAR-------PLVVRYYLGSAHYRSVLDYRPTSLEEARVAIERVEAFLAATSELMAP 344 Query: 348 DPA-------VLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILG 393 DP AL +D+N A+ LH+ R + A A++LG Sbjct: 345 DPQERRVPQDFADALDDDMNIPRALAVLHEQTRAGNAALAAGADASEFANAVWAMANVLG 404 Query: 394 IEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + S A I ++++R K +++AD +R L + G ++D Sbjct: 405 LTSLMNLDGSGASGAEHQALDALIHTILEQRASARAEKDWATADRMRDVLAAAGITVKD 463 >gi|307701600|ref|ZP_07638617.1| cysteine--tRNA ligase [Mobiluncus mulieris FB024-16] gi|307613279|gb|EFN92531.1| cysteine--tRNA ligase [Mobiluncus mulieris FB024-16] Length = 538 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 144/341 (42%), Positives = 200/341 (58%), Gaps = 26/341 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ + EF+ ++ + +Y+CGPTV H+G+ R + FDVL R LR E Sbjct: 1 MKLYDSATHAVREFKPLNTGKVGLYLCGPTVQGAPHLGHLRAALDFDVLVRWLRRSGLE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI++++R+ + + + ++F L + P P Sbjct: 60 -VTYVRNVTDIDDKILKKSRE------LGVPWWALAAHFEREFDWAYRALNTVPPDVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-----DEQKMGTR 178 AT HIPQ I L+Q +I GHAY + + F S+P+YGS + +++ E Sbjct: 113 ATGHIPQQIALVQRLIDRGHAYADTAGNVYFAVKSLPDYGSLTNQRVADLATTEDAAQID 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + K++P DF LWK + P EP W++PWGRGRPGWH+ECSAMS YLG FDIHG Sbjct: 173 AATESGKRDPRDFALWKAAKPEEPADAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDIHG 232 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDL FPHHENE AQS A A +W+HN +L L+G KMSKS GN + + LL Sbjct: 233 GGLDLRFPHHENEQAQSHGAGW--GFARLWMHNAWLTLKGEKMSKSVGNVVGVRRLLG-- 288 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 WPAPV+RLA++ THYR ++F+ L +A L K Sbjct: 289 -----KWPAPVVRLAVIATHYRTNLEFSEDTLVQAAGLWDK 324 >gi|88809002|ref|ZP_01124511.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 7805] gi|88786944|gb|EAR18102.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 7805] Length = 499 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 181/505 (35%), Positives = 247/505 (48%), Gaps = 78/505 (15%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++ NTL R+ FQ + + +Y CG TVYD H+G+AR I +DVL R L Sbjct: 1 MPVSLRFTNTLTRRTEPFQPLKEGQVSIYCCGVTVYDLCHLGHARSYINWDVLRRYL--I 58 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VT+V+N TDIDDKI++RA +E S+ +++ +N F D L L P Sbjct: 59 WSGYAVTFVQNFTDIDDKILKRAAEEGSSM------EVVSERNIDAFHADMDALGILRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 PRAT + + LI + G AY A ++ F YG S R + +Q+ R Sbjct: 113 RMPRATRCLEGIRALISELEAKGAAYSAEGDVYFAVMKHAGYGKLSGRDLADQQTNADGR 172 Query: 179 VP--EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 V E+ K++P DF LWK + EP + SPWG GRPGWHIECSAM LG DIH G Sbjct: 173 VADAEEARKQHPFDFALWKGAKAGEPSFPSPWGDGRPGWHIECSAMVREELGDTIDIHLG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL+FPHHENEIAQS A ++ A +W+HNG +N+ G KMSKS GNF TI LLE+ Sbjct: 233 GADLVFPHHENEIAQSEAATG-QELARVWLHNGMVNVGGEKMSKSLGNFTTIRALLES-- 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT---------EAEILLSKWPQTSTSKGII 347 A +RL +L HYR+P+DFT L A + L + G Sbjct: 290 ----GLSAMTLRLFVLQAHYRKPLDFTSDALEAATTGWKGLNAALSLGDLHAEALGWGAA 345 Query: 348 DP----AVLS------------------ALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 P AVL+ A+ +DLN+ A+ L LAR + L Sbjct: 346 APMNGGAVLASAPSANEMLLGARQRFSDAMDDDLNSSGALAVLFDLARPLRALANRLDRG 405 Query: 386 NASAH--------------------ILGIEVCKEHLNKN------ISIAIEKLVQERLIL 419 +A H +LG+ + EH + N S AIE ++ R + Sbjct: 406 DAPTHSDDEGRGLQQRWLLLRELAGVLGLRL--EHPSGNDTETDLDSQAIEAAIEARRMA 463 Query: 420 LKMKKFSSADYIRKQLESKGFILED 444 + K F+ AD IR +L ++G L D Sbjct: 464 KQSKDFAEADRIRAELTAQGIELID 488 >gi|193214317|ref|YP_001995516.1| cysteinyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] gi|193087794|gb|ACF13069.1| cysteinyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] Length = 489 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 183/487 (37%), Positives = 251/487 (51%), Gaps = 60/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL RK F+ + + +YVCGPTVY +H+G+A+ + FDV+ R LR G K Sbjct: 12 LQIYNTLTRKKEIFEPLVDGRVSLYVCGPTVYGHSHLGHAKSYVSFDVVARWLRQL-GYK 70 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV+NITD+ DDKII +A++EH P+ + + F D L Sbjct: 71 -VKYVQNITDVGHLTDDADEGDDKIIAQAKREHID-PME-----VAQFYARSFFADMDAL 123 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR-KIDEQ 173 P P AT HIP+ I LI+ +I HAYE N + FD +S YG S R +E Sbjct: 124 GNQRPNISPTATGHIPEQIALIEQLIEKNHAYEVNGNVYFDVASFEGYGKLSGRINQEEL 183 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G RV + K++PADF LWK++ P W SPWG G PGWHIECSAMS YLG+ FD Sbjct: 184 EAGARVEVRSEKRHPADFALWKKAEPNHLMKWASPWGVGYPGWHIECSAMSMKYLGETFD 243 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGGL+ FPHH+ EIAQS CA + W+HN + + G+KM KS GN I++ ++ Sbjct: 244 IHGGGLENQFPHHDCEIAQSECATG-KPFVRYWMHNNMVTVNGQKMGKSLGNSISLKDIF 302 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-------TSKG 345 KKF P VIR +L +HYR +DF+ + A+ L K +++ K Sbjct: 303 --KKF-----PPVVIRFFILQSHYRSTLDFSDAAIEAAQTGLKKLQESAARLNEAQAGKT 355 Query: 346 IIDPA-----VLSALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASA 389 +D A A+ +D N AI L LARE +T + F A Sbjct: 356 DLDLAPYEQRFTDAMNDDFNAPMAIAVLFDLAREINSALAADGLSATSLENAKAFFETYA 415 Query: 390 H-ILGI-------EVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESKGF 440 + +LGI + +K + LV E R K K F++AD IR L G Sbjct: 416 NGVLGILSTAGESDAAGSDKDKERLEGVMALVLELRQAARKNKDFATADKIRDGLTGIGI 475 Query: 441 ILEDYKN 447 ++D K+ Sbjct: 476 EVKDTKD 482 >gi|255327696|ref|ZP_05368762.1| cysteine--tRNA ligase [Rothia mucilaginosa ATCC 25296] gi|255295370|gb|EET74721.1| cysteine--tRNA ligase [Rothia mucilaginosa ATCC 25296] Length = 472 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 246/475 (51%), Gaps = 44/475 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y++ I EF+ + P R+Y CG TV H+G+ R +VFD L R +RY G K Sbjct: 3 MRFYDSASATIREFEPVVPGEARIYYCGATVQGEPHLGHIRSALVFDQLSRWMRYR-GLK 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPI---NDAISIITSKNTQQFVKDTTRLACLAPT 120 VT VRN+TDIDDKI+ + A P N+ + + + F + L PT Sbjct: 62 -VTTVRNVTDIDDKILAKSADSMEPGFEGEFPNEQWWALAYRFEKVFAQAYAALGIDPPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+M LIQ++I GHAY A + ++ FD S YG+ + + +++ + Sbjct: 121 YEPRATGHIPEMFALIQHLIDRGHAYPALDDSGDVYFDVRSWDKYGALTNQSVEDMQDSA 180 Query: 178 RVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK P+ WESPWGRGRPGWH+ECSAM+ YLG FDIH Sbjct: 181 DADPR-GKRDPRDFALWKGYKEGEPLTASWESPWGRGRPGWHLECSAMAGKYLGSRFDIH 239 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGGLDL FPHHENE+AQS A + AN W+HNG + EG KMSKS GN I+ ++L+ Sbjct: 240 GGGLDLRFPHHENELAQSTAAG--DDFANFWMHNGMVTYEGEKMSKSIGNTISPAQMLQM 297 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDP---- 349 + V+R + HYR +D+ L EA + + + ++ ++ P Sbjct: 298 AR-------PLVVRYYLGSAHYRSILDYRPSSLQEAATAIERVEAFLAATQDVLKPGREV 350 Query: 350 --AVLSALYNDLNTVSAIQALHKLARES----TKNHDLLPIFN---ASAHILGI------ 394 A A+ +D+N A+ LH+ R D N A A +LG+ Sbjct: 351 PQAFAEAMDDDVNIPRALAVLHEQTRAGNAALAAGEDASEAANAVMAMAEVLGLAQLMSF 410 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E ++ + I+ ++ ER K ++ AD +R L S G ++D N Sbjct: 411 NAEGTSGAEHEALDALIQAVLAERADARAQKDWAKADAMRDLLASAGVQVKDGAN 465 >gi|152964879|ref|YP_001360663.1| cysteinyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] gi|189082067|sp|A6W6G0|SYC_KINRD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151359396|gb|ABS02399.1| cysteinyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] Length = 471 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 169/475 (35%), Positives = 251/475 (52%), Gaps = 54/475 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + ++++ + EF + P + +YVCG T H+G+ R +VFDVL R L+R Y Sbjct: 3 LHLHDSAAGAVREFAPLVPGQVGIYVCGATPQGSPHLGHVRAQVVFDVLRRWLVRSGY-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT VRN+TDIDDKI+ +A + + + ++F L L PT +P Sbjct: 61 -EVTLVRNVTDIDDKILAKAAEAGTEWWAH------AYRFEREFSAAYAALGVLPPTVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT H+P+M+ LIQ ++ GHAY A + ++ FD S P YG + +++D+ + Sbjct: 114 RATGHVPEMVELIQRLVERGHAYAAADGSGDVYFDVRSWPAYGELTHQRLDDMEPAADAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK + P EP W +PWGRGRPGWH+ECSAM+ YLG FD+HGGG Sbjct: 174 PR-GKRDPRDFALWKGAKPGEPATASWATPWGRGRPGWHLECSAMAGRYLGPRFDVHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDL FPHHENE AQS A + AN W+HN F+ + G KMSKS GN + + LLET + Sbjct: 233 LDLRFPHHENEQAQSRAAG--DGFANFWLHNHFVTMSGEKMSKSLGNVLGVPHLLETHR- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIID 348 A V+R ++ HYR ++ + L EAE S+ + G + Sbjct: 290 ------AVVLRYYLVSGHYRTHLEHSENSLVEAEAAYSRLEGLLRRAAERLGGLAAGEVP 343 Query: 349 PAVLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAH------ILGIEVCKE 399 A +A+ +DL T +A+ LH+ AR + D + A+ +LG++ E Sbjct: 344 AAFAAAMDDDLATPTALAVLHETARAGNSALAAGDEAALRTAAGQLRAGLDVLGLDPFAE 403 Query: 400 HLNKNIS------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILED 444 + A++ LV+ RL K F++AD +R L+S G ++ED Sbjct: 404 PWASQTTGSDAARTALDVLVRARLEDRATARATKDFATADAVRDSLKSAGIVIED 458 >gi|309803791|ref|ZP_07697877.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] gi|308164200|gb|EFO66461.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] Length = 357 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 149/340 (43%), Positives = 201/340 (59%), Gaps = 23/340 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E+ S+ + + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKENVSV------ADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK + T E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS A +K N W+HNGF+ + + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQS-EAKTGQKFVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 + V+R M YR+PI++T L +AE +L ++ Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAEAVLKRY 324 >gi|21674967|ref|NP_663032.1| cysteinyl-tRNA synthetase [Chlorobium tepidum TLS] gi|34222752|sp|Q8KAK2|SYC_CHLTE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21648199|gb|AAM73374.1| cysteinyl-tRNA synthetase [Chlorobium tepidum TLS] Length = 487 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 259/491 (52%), Gaps = 66/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R F+ I P +YVCGPTVY AH+G+A+ + FDV+ R LR+ E+ Sbjct: 4 LHIYNSLTRTKEPFKPIHPGLATIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRHVGEEQ 63 Query: 65 C--VTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 V YV+NITD+ +DKI ++ARQE P+ + T+ F +D Sbjct: 64 GYKVRYVQNITDVGHLTDDADEGEDKIQKQARQERIE-PME-----VAQYYTRSFYEDMD 117 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 RL P P AT HIP+ I L++ +I GHAYE+N + FD +S YG S R E Sbjct: 118 RLGVERPNIAPTATGHIPEQIALVERLIESGHAYESNGNVYFDVNSFEGYGKLSGRTDQE 177 Query: 173 Q-KMGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYL 227 + G RV E+ K+NP+DF LWK++ EPG W+SPWG G PGWH+ECSAM+ YL Sbjct: 178 ALQSGGRVAERSDKRNPSDFALWKKA---EPGHIMKWQSPWGEGYPGWHLECSAMAMKYL 234 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIHGGG++ FPHH+ EIAQS A + W+HN + ++G KM KS NF+ Sbjct: 235 GDTIDIHGGGMENKFPHHDCEIAQSEAATG-KPFVRYWMHNNMVTVDGVKMGKSLKNFVN 293 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------- 340 + EL G+ P VIR +L +HYR P+DF+ + ++ K +T Sbjct: 294 LKELF------GKFDPL-VIRFFILQSHYRSPLDFSEAAIRASQSGFEKLQETYKRLVES 346 Query: 341 STSKGIIDPA-----VLSALYNDLNTVSAIQ-----------ALHKLARESTKNHDLLPI 384 + KG +D A + AL +D NT AI AL K ++ + Sbjct: 347 AEGKGQLDVATFEQKITDALNDDFNTPVAIAVLFEFIKALNGALDKDGLDAASKSGAQNL 406 Query: 385 FNASA-HILGIEVCKEHLNKNISIAIEKLVQERL-ILLKMKK-------FSSADYIRKQL 435 F++ A +LGI ++ L S + + + + +LL+++K F+++D IR L Sbjct: 407 FDSYAGKVLGILKSRDELLAGESGESAQTLNDVMAVLLELRKEARASKDFATSDKIRDLL 466 Query: 436 ESKGFILEDYK 446 +G ++D + Sbjct: 467 MERGIEIKDTR 477 >gi|238926117|ref|ZP_04657877.1| cysteinyl-tRNA synthetase [Selenomonas flueggei ATCC 43531] gi|238886007|gb|EEQ49645.1| cysteinyl-tRNA synthetase [Selenomonas flueggei ATCC 43531] Length = 476 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 140/334 (41%), Positives = 195/334 (58%), Gaps = 17/334 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L + G + Sbjct: 2 ITVYNTMTRKKEEFHPLREGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRYLAHK-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII A +E + I+ + + L PR Sbjct: 61 -VRYIQNFTDVDDKIINAANREDVTW------KEISDRYIAAYFTAMDALNVRRADVFPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + + +I +I+ +I G+AY ++ + + YG S R +D+ + G RV Sbjct: 114 VSETMDDIIRMIETLIERGYAYVTETGDVYYSVEAFAPYGCLSGRSLDDMEAGARVEVNA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG+ FD HGGG DLIFP Sbjct: 174 TKHHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSVKYLGEAFDFHGGGSDLIFP 233 Query: 244 HHENEIAQSC-CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ+ C D K A W+HNGF+ ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQADPCIDADVKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KEY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 P VIR +L THYR P+DF+ +RL EA+ L++ Sbjct: 287 PGEVIRFFILQTHYRSPLDFSDERLQEAQTALAR 320 >gi|254430939|ref|ZP_05044642.1| cysteinyl-tRNA synthetase [Cyanobium sp. PCC 7001] gi|197625392|gb|EDY37951.1| cysteinyl-tRNA synthetase [Cyanobium sp. PCC 7001] Length = 505 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 167/413 (40%), Positives = 221/413 (53%), Gaps = 65/413 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +++ NTL R+ F+ + P + +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 3 LRLTNTLTRRTEAFEPLQPGTVSIYCCGVTVYDLCHLGHARSYIAWDVLRRYLLWRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TDIDDKI+ RA +E S+ ++++N Q F D RL L P Sbjct: 61 --AVTFVQNYTDIDDKILRRAAEEGSSM------EAVSARNIQAFEADMARLNILPPDRM 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP 180 PRAT + + LIQ + G AY A+ ++ F YG S R++ EQ+ RV Sbjct: 113 PRATRSLEAIRALIQELEARGAAYSADGDVYFAVMRHAGYGKLSGRELSEQQNNAAGRVA 172 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + P EP + SPWG GRPGWHIECSAM LG DIH GG Sbjct: 173 DAEEARKQHPFDFALWKGAKPGEPSFPSPWGPGRPGWHIECSAMVREELGDTIDIHLGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A E A W+HNG +N+ G KMSKS GNF TI LL+ Sbjct: 233 DLIFPHHENEIAQSEAATGRE-LARYWLHNGMVNVGGEKMSKSLGNFTTIRGLLD----- 286 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 S +P+ +RL L HYR+P+DFT + L A + W + + G+ Sbjct: 287 --SGISPMTLRLFTLQAHYRKPLDFTAEALDAAA---AGWSGLNAALGLNGGEDGSAGQE 341 Query: 347 --------------IDPAVL------------SALYNDLNTVSAIQALHKLAR 373 DPA L +A+ +DLNT +A+ L +LAR Sbjct: 342 KATEPEAITAVPIATDPASLREELAALQRRFIAAMDDDLNTAAALAVLFELAR 394 >gi|226363790|ref|YP_002781572.1| cysteinyl-tRNA synthetase [Rhodococcus opacus B4] gi|254781690|sp|C1BAC4|SYC_RHOOB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226242279|dbj|BAH52627.1| cysteinyl-tRNA synthetase [Rhodococcus opacus B4] Length = 464 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 243/471 (51%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R + +F + P + +Y+CG TV HIG+ R + FDVL R L + + Sbjct: 3 LRLFDTETRALRDFAPLAPGHASVYLCGATVQGDPHIGHVRSGVAFDVLRRWLLAH--DY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDI+DKI+ +A + P + + T + +L L P+ +PR Sbjct: 61 DVAFVRNVTDIEDKILNKAAE--AGRPWWEWAATFERSFTWAY----QQLGVLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ ++Q +I +GHAY A ++ FD S P YGS S K+D+ G E Sbjct: 115 ATGHITQMVEMMQRLIDNGHAYAAGGDVYFDVRSYPRYGSLSGHKLDDVHQGESAGEC-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GGLDL+FPH Sbjct: 173 KRDPRDFTLWKAEKPGEPSWPTPWGRGRPGWHLECSAMAEFYLGAAFDIHCGGLDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA + A W+HNG++ + G KMSKS GN +++ +L+ + Sbjct: 233 HENEIAQAKCAG--DDFAQYWLHNGWVTMGGEKMSKSLGNVLSVPNVLKKVR-------P 283 Query: 305 PVIRLAMLMTHYREPIDFT---------VQRLTEAEILLSKWPQTSTSKGIIDPAVLSAL 355 +R + HYR ++++ R E+ ++ ++ + G A AL Sbjct: 284 QELRYYLGSAHYRSMLEYSDTALDEGAAAYRRIESFVMRTQERAGEVTIGRWTDAFARAL 343 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---------HILGIEVCKEHLNKN-- 404 +DL +A+ +H RE D + A A ILG++ EH + Sbjct: 344 DDDLAVPAALAEVHGKVREGNIALDGGDLEGARAIASQVRAMLGILGVDPLDEHWTQETA 403 Query: 405 --------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + ++ R K ++ AD +R +L G + D N Sbjct: 404 DASAATDALDVLVRAELERRQTARAEKNWAVADEVRDRLIRAGIEVTDTPN 454 >gi|72382588|ref|YP_291943.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A] gi|109894920|sp|Q46JT8|SYC_PROMT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72002438|gb|AAZ58240.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A] Length = 500 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 187/516 (36%), Positives = 257/516 (49%), Gaps = 82/516 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K NTL +K +F +I+P+ +++Y CG TVYD H+G+AR + +DVL R L + E Sbjct: 3 LKFTNTLSKKKEDFISINPNQVKIYCCGVTVYDLCHLGHARSYLNWDVLRRFLIWKGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII RA +E S ++ +N +F KD L+ L PT PR Sbjct: 62 -VKFVQNFTDIDDKIINRANKEGCST------DELSERNIDEFHKDMDTLSILRPTSMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT + Q+I I+ + AY +N ++ F NYG S R+I++Q + Sbjct: 115 ATKCLHQIINFIEELEQKKVAYSSNGDVYFSVDKHKNYGKLSGREIEDQIDNAAGRLKTN 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K KKN DF LWK+S E + SPWG GRPGWHIECSAM LG+ DIH GG DL Sbjct: 175 QKESKKNSLDFALWKKSNSGEVSYSSPWGNGRPGWHIECSAMVKQELGESIDIHLGGSDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + E A W+HNG +N+ G KMSKS GNF TI LLE Sbjct: 235 IFPHHENEIAQSEACNGKE-LAKYWLHNGMVNVGGEKMSKSLGNFTTIRSLLE------E 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------------------------EILLS 335 +R +L T+YR+P+DFT + L A EI L Sbjct: 288 DISPMTLRFFVLQTNYRKPLDFTEEALKAASKGWERLNNCLSFGYIYKIKDQSKNEIFLD 347 Query: 336 KWPQTSTSKGIIDPAVLSALY-------NDLNTVSAIQALHKLAR--------------E 374 K P ++ +D L +DLNT A+ L +L++ Sbjct: 348 K-PIKKSANTKLDKNSFKLLSDFEKYMDDDLNTSGALSILFELSQPIRKIINFLKEKDIN 406 Query: 375 STKNHDLLPIFN------ASAHILGIEV--CKEHLNKNISI---AIEKLVQERLILLKMK 423 +L +FN A +LG++V +E N + IE+L++ R + K Sbjct: 407 EVDQDELNQVFNKWELLSELAGVLGLKVNLNQEKPKNNPELDTNKIEELIKNRSLAKANK 466 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 F AD IR L++ G L D + +T WKQ Sbjct: 467 DFLLADKIRADLKNIGIDL-----IDKPKGVTEWKQ 497 >gi|88855742|ref|ZP_01130405.1| cysteinyl-tRNA synthetase [marine actinobacterium PHSC20C1] gi|88815066|gb|EAR24925.1| cysteinyl-tRNA synthetase [marine actinobacterium PHSC20C1] Length = 476 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 172/477 (36%), Positives = 246/477 (51%), Gaps = 50/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+T + + + + + +YVCGPTV HIG+ R +V+D+ R L Y + Sbjct: 3 IRLYDTRSASLVDLKPREAGKVGIYVCGPTVQAAPHIGHLRSALVYDIWRRWLTYRGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT VRN+TDIDDKI+ +A + + + + + +F L L PT++PR Sbjct: 62 -VTLVRNVTDIDDKILNQA-VDAAAEGSAEQWWALAYRIELEFTAGYNELGILPPTYEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT +I +M LI ++I GHAY A + ++ FDT S P YG +R+K+D+ Sbjct: 120 ATANISEMRELIASLIERGHAYAAADDSGDVYFDTQSWPTYGELTRQKLDDMVAAADADP 179 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++ DF LWK S P EP W SPWG GRPGWHIECSAMS YLG FDIHGGGL Sbjct: 180 R-AKRDSRDFALWKGSKPTEPTSASWSSPWGDGRPGWHIECSAMSRRYLGSGFDIHGGGL 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS + A W+HNG +N+ G+KMSKS GN + ELL+ + Sbjct: 239 DLRFPHHENELAQSSALG--DDFAQHWVHNGMVNVNGQKMSKSLGNSVFARELLDAAR-- 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK----------- 344 V+R + HYR ID+T L EAE + + + +T + Sbjct: 295 -----PIVVRYLLGAAHYRSTIDYTDNSLAEAEAAFERLEVFIERATRRLRDTRFDVANI 349 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNAS------AHILGIE 395 + A A+ +DL A+ +H R + + DL + A A +LGI Sbjct: 350 NEVPEAFGEAMDDDLAVPQALAVVHDTIRAGNAALDDGDLAAVATARSQVVAMAQVLGIN 409 Query: 396 VC--------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E +S +EKL+++R K F+ AD IR +L + G +ED Sbjct: 410 PLDPRWGSERSEPAVAALSALVEKLIEDRNTARSAKDFAVADRIRDELSAAGITVED 466 >gi|295396934|ref|ZP_06807057.1| cysteine--tRNA ligase [Aerococcus viridans ATCC 11563] gi|294974827|gb|EFG50531.1| cysteine--tRNA ligase [Aerococcus viridans ATCC 11563] Length = 473 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 166/493 (33%), Positives = 247/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL + EF+ + P +I MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 LKIYNTLTNQKEEFKPLVPGSISMYVCGPTVYNYIHIGNARSTVAFDTVRRYFEYRGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII RA +E + P I K + F +DT L T PR Sbjct: 61 -VKYVSNFTDVDDKIINRANEEGLT-P-----EQIADKYIEAFYEDTDALNVKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 ++ +I + +++ AY + ++ + T YG S + ID+ + G Sbjct: 114 VVENMDDIIQFVADLVDKDFAYVVDGDVYYRTRKFEKYGQLSDQNIDDLRAGASERLEAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ DF LWK + P E W SPWG GRPGWHIECS M++ LG DIH GG DL Sbjct: 174 SQSKKEDVVDFALWKSAKPGEISWTSPWGEGRPGWHIECSVMATKLLGDTLDIHAGGHDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A AN W+HNGF+ + + KMSKS GNF+ ++L+ Sbjct: 234 TFPHHENEIAQS-EAHTGHTFANYWMHNGFVTMGDDDEKMSKSLGNFVLAHDLM------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQ---------------------RLTEAEILLSKW 337 + V+R + HYR P+ F + R +A+ L Sbjct: 287 -KQVDPQVVRFFLASAHYRSPLRFNEENIQDATNNLNNLKTAYANLNYRFEDAKAQLDND 345 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE----STKNHDLLPI-------FN 386 + ++ + A+ +D+NT + + +++L R+ + + +P+ F Sbjct: 346 AEVLAQIKALENEFIEAMDDDVNTPNGLTVVYRLMRDMNVYTNQKEVSIPVLEAFKESFT 405 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ + E + ++ I+ L+ ER K F+ AD IR QL+++G IL+D Sbjct: 406 ALLTIFGVTLSDEQ--ELLADDIQALIDERNQARADKNFARADEIRDQLKAEGIILDD-- 461 Query: 447 NPDNGQRMTRWKQ 459 + TRWK+ Sbjct: 462 ----TAQGTRWKR 470 >gi|124026295|ref|YP_001015411.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] gi|171769740|sp|A2C3T6|SYC_PROM1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123961363|gb|ABM76146.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] Length = 500 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 187/516 (36%), Positives = 259/516 (50%), Gaps = 82/516 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K NTL +K +F +I+P+ +++Y CG TVYD H+G+AR + +DVL R L + E Sbjct: 3 LKFTNTLSKKKEDFISINPNQVKIYCCGVTVYDLCHLGHARSYLNWDVLRRFLIWKGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII RA +E S ++ +N +F KD L+ L PT PR Sbjct: 62 -VKFVQNFTDIDDKIINRANKEGCST------DELSERNIDEFHKDMDTLSILRPTSMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT + Q+I I+ + AY +N ++ F + NYG S R+I+ Q + Sbjct: 115 ATKCLHQIINFIEELEQKKVAYSSNGDVYFSVNKHKNYGKLSGREIENQIDNAAGRLKTN 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K KKN DF LWK+S E + SPWG GRPGWHIECSAM LG+ DIH GG DL Sbjct: 175 QKESKKNSLDFALWKKSNSGEVSYSSPWGNGRPGWHIECSAMVKQELGESIDIHLGGSDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + E A W+HNG +N+ G KMSKS GNF TI LLE Sbjct: 235 IFPHHENEIAQSEACNGKE-LAKYWLHNGMVNVGGEKMSKSLGNFTTIRSLLE------E 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------------------------EILLS 335 +R +L T+YR+P+DFT + L A EI+L Sbjct: 288 GISPMTLRFFVLQTNYRKPLDFTQEALKAASKGWERLNNCLSFGYIYKIKDQAKNEIILD 347 Query: 336 KWPQTSTSKGIIDPAVLSALY-------NDLNTVSAIQALHKLARESTKNHDLL------ 382 K P ++ +D L +DLNT A+ L +L++ K + L Sbjct: 348 K-PIKKSANTNLDKESFKLLSDFERYMDDDLNTSGALSILFELSQPIRKIINFLKEKDIN 406 Query: 383 --------------PIFNASAHILGIEVCKEHLN-KN----ISIAIEKLVQERLILLKMK 423 + + A +LG++V H N KN + IE+L+++R + K Sbjct: 407 EVDQDELNQVFYKWELLSELAAVLGLKVNLNHENPKNNPELDTNKIEELIKKRSLAKANK 466 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 F AD IR ++ G L D + +T WKQ Sbjct: 467 DFLLADKIRDDFKNIGIDL-----IDKPKGVTEWKQ 497 >gi|332708902|ref|ZP_08428873.1| cysteinyl-tRNA synthetase [Lyngbya majuscula 3L] gi|332352444|gb|EGJ32013.1| cysteinyl-tRNA synthetase [Lyngbya majuscula 3L] Length = 494 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 175/510 (34%), Positives = 250/510 (49%), Gaps = 78/510 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ ++ +RMY CG TVYD H+G+AR IV+D L++ + Sbjct: 3 LNLYNTLTRRKESFEPLETGKVRMYCCGITVYDLCHLGHARTCIVWDTARHYLQWRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RAR+E S+ ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRARREGTSM------EAVSERFIDAYFEDMARLNVQEANAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ + + L+ + G+AYEA+ ++ + YG S RK+++ + G V Sbjct: 115 ATHSLDGIKRLVCELEQKGYAYEADGDVYYSVRRFEEYGKLSGRKLEDLQAGASGRVDVA 174 Query: 181 EKY--HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+P DF +WK + P EP WESPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DSVGPKKKDPFDFAVWKSAKPEEPSWESPWGPGRPGWHIECSAMVRDMLGETIDIHTGGS 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS + A W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 235 DLVFPHHENEIAQSEAVTG-KSLARYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-----------------ILLSKWPQTS 341 R +RL +LM YR+PIDFT + A I L Q++ Sbjct: 289 -RPVDPMAVRLFVLMAQYRKPIDFTDDAIASATNGWQTLKEGLLFGHNYGIQLGWQDQSA 347 Query: 342 T-----------SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-- 388 T S I A+ +DLN + L ++A+ + ++L + Sbjct: 348 TPKPSQPLQDDLSNKTIAQQFQEAVDDDLNFAGGLAVLFEVAKGLRREGNILVHQGKTET 407 Query: 389 ---------------AHILGIEVCKEHLNKNISI------AIEKLVQERLILLKMKKFSS 427 A +LG+E E +S IE L+Q+R K K F Sbjct: 408 PASELEQQWRSLVELAEVLGLEAQPEE-EAEVSTDGLSDGEIEALIQQRAEARKTKNFEL 466 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +D IR L+++G L D G +T W Sbjct: 467 SDRIRDDLQAQGITL-----IDQGGGVTTW 491 >gi|227876791|ref|ZP_03994900.1| cysteine--tRNA ligase [Mobiluncus mulieris ATCC 35243] gi|227842688|gb|EEJ52888.1| cysteine--tRNA ligase [Mobiluncus mulieris ATCC 35243] Length = 538 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/341 (41%), Positives = 200/341 (58%), Gaps = 26/341 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ + EF+ ++ + +Y+CGPTV H+G+ R + FDVL R LR E Sbjct: 1 MKLYDSATHAVREFKPLNTGKVGLYLCGPTVQGAPHLGHLRAALDFDVLVRWLRRSGLE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI++++R+ + + + ++F L + P P Sbjct: 60 -VTYVRNVTDIDDKILKKSRE------LGLPWWALAAHFEREFDWAYRALNTVPPDVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-----DEQKMGTR 178 AT HIPQ I L+Q ++ GHAY + + F S+P+YGS + +++ E Sbjct: 113 ATGHIPQQIALVQRLLDRGHAYADTAGNVYFAVKSLPDYGSLTNQRVADLATTEDAAQID 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + K++P DF LWK + P EP W++PWGRGRPGWH+ECSAMS YLG FDIHG Sbjct: 173 AATESGKRDPRDFALWKAAKPEEPADAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDIHG 232 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDL FPHHENE AQS A A +W+HN +L L+G KMSKS GN + + LL Sbjct: 233 GGLDLRFPHHENEQAQSHGAGW--GFARLWMHNAWLTLKGEKMSKSVGNVVGVRRLLG-- 288 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 WPAPV+RLA++ THYR ++F+ L +A L K Sbjct: 289 -----KWPAPVVRLAVIATHYRTNLEFSEDTLVQAAGLWDK 324 >gi|110289208|gb|AAP54161.2| tRNA synthetase class I family protein, putative, expressed [Oryza sativa Japonica Group] Length = 491 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/252 (51%), Positives = 170/252 (67%), Gaps = 8/252 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++T + F+ + MYVCG T YD++H+G+AR + FDVL+R L+Y E Sbjct: 21 ELRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYLKYLGYE 80 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + DA+S+ +S+ +F +D L CL PTH+P Sbjct: 81 --VNYVRNFTDIDDKIIKRANEAG-----EDALSL-SSRFIDEFHRDMYELQCLPPTHEP 132 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T HI Q+I LI I+ +G AY ++ F + P+Y S S RK+D+ + GTRV Sbjct: 133 RVTKHIEQIIDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKVDQNRPGTRVAVDA 192 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF LWK + EP WESPWGRGRPGWHIECSAMS+HYLG +FDIHGGG DLIFP Sbjct: 193 RKRNPADFALWKSAKEGEPSWESPWGRGRPGWHIECSAMSAHYLGNIFDIHGGGKDLIFP 252 Query: 244 HHENEIAQSCCA 255 HHENE+AQS A Sbjct: 253 HHENELAQSQAA 264 >gi|313896271|ref|ZP_07829824.1| cysteine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975070|gb|EFR40532.1| cysteine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 475 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 172/483 (35%), Positives = 248/483 (51%), Gaps = 62/483 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGE 63 + +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L R Y Sbjct: 2 LTVYNTMTRKKEEFHPLKEGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRYLARKGY-- 59 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y++N TD+DDKII A + + I+ + + L P Sbjct: 60 -RVRYIQNFTDVDDKIINAANRAGVTW------KEISDRYIAAYFTAMDALNVHRADVFP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R + + +I ++ +I G+AY + ++ + +YG S R +D+ + G RV Sbjct: 113 RVSETMEDIIRMVGTLIARGYAYATSEGDVYYSVEKFAHYGRLSGRSLDDMEAGARVEIN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG+ FD HGGG DLIF Sbjct: 173 ETKRHPMDFALWKAAKPGEPAWESPWGKGRPGWHIECSAMSVKYLGEAFDFHGGGSDLIF 232 Query: 243 PHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENEIAQ+ C D EK A W+HNGF+ ++ KMSKS NF T+ ++L + Sbjct: 233 PHHENEIAQAEPCIDGHEKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KE 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPAVL-- 352 +P VIR +L THYR P+DF+ +RL EAE L++ T S +G D A Sbjct: 286 FPGEVIRFFILQTHYRSPLDFSDERLREAEAALARLAHTKEVVDELSGREGTADTAAALV 345 Query: 353 -----------SALYNDLNTVSAIQALHKLARESTKNHDLLP---------------IFN 386 +A+ +D NT A+ + L++E + L + Sbjct: 346 AQAKDFLTAFDAAMDDDFNTALALSQMFGLSKEINRYRQELEHGTAFDAAHFAEAADAYR 405 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK-----MKKFSSADYIRKQLESKGFI 441 A I+GI E + + + E +I L+ K ++ AD IR +L+ +G + Sbjct: 406 TMAEIIGI---FEQEPAAVEGGLADGLMEIIIALRQDARVQKNWALADRIRDELKERGVV 462 Query: 442 LED 444 LED Sbjct: 463 LED 465 >gi|223982635|ref|ZP_03632869.1| hypothetical protein HOLDEFILI_00143 [Holdemania filiformis DSM 12042] gi|223965415|gb|EEF69693.1| hypothetical protein HOLDEFILI_00143 [Holdemania filiformis DSM 12042] Length = 478 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/334 (42%), Positives = 201/334 (60%), Gaps = 21/334 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL KI EF+ + P+ + MYVCGPTVY+ AHIGNARP+IVFD L RL Sbjct: 37 IRLYNTLSGKIEEFKPMKPNEVSMYVCGPTVYNHAHIGNARPIIVFDTLRRLFEAQ--GY 94 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF--VKDTTRLACLAPTHQ 122 V YV N TD+DDKII++A +E N A +++++ + + V+D+ L T Sbjct: 95 TVKYVSNYTDVDDKIIKKAHEE------NVAEGVVSARYIEAYQKVRDSLNTEPLFAT-- 146 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + ++I+ I ++ GHAY+ ++ F S+P+YGSFS++ +++ ++G R+ E Sbjct: 147 PRVTETMDEIIHFIDELVKTGHAYQVGGDVYFRVGSVPSYGSFSKQNLEDLQVGARIEEN 206 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK T M W+SPWG GRPGWH EC M G DIHGGG+DL F Sbjct: 207 TKKENPLDFALWKE-TDMGIKWQSPWGEGRPGWHTECVVMIHKEFGDQIDIHGGGMDLRF 265 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS A+ W+HN +N+ G KMSKS GN +++E K G Sbjct: 266 PHHENEVAQSQALFH-NSIAHYWLHNAMININGEKMSKSLGNVSWAKDVIE--KLG---- 318 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 A ++R ML HYR ++F+ + + A L K Sbjct: 319 -ADLVRWLMLSVHYRGELNFSDETIETARKELDK 351 >gi|288560827|ref|YP_003424313.1| cysteinyl-tRNA synthetase CysS [Methanobrevibacter ruminantium M1] gi|288543537|gb|ADC47421.1| cysteinyl-tRNA synthetase CysS [Methanobrevibacter ruminantium M1] Length = 480 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 174/496 (35%), Positives = 256/496 (51%), Gaps = 78/496 (15%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + R+ E + I+++VCGPTVYD AHIG+ R I FD + R L + V Y++ Sbjct: 1 MTREKGELNTLFADKIKLFVCGPTVYDDAHIGHGRTYISFDTIKRYLEF--KGYSVFYLQ 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 NITDIDDKII RA++ + K ++F++D L + + RAT+HI Sbjct: 59 NITDIDDKIINRAKESGIDS------KYLAEKFEKRFIEDMAALNVTSVNYFARATDHIE 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 +++ IQ +I G+AY + F+ + +YG S RK+++ + R+ KK+P D Sbjct: 113 EILDQIQRLIDKGYAYVTETGVYFEVAKFEDYGKLSNRKLEDLET-HRIDIDSSKKSPHD 171 Query: 191 FILWK-RSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 F LWK R P EP W+SPWG+GRPGWHIE +A++ Y G +DIHGGGLDLIFPHH+ Sbjct: 172 FALWKNREAPEYAGEPVWDSPWGKGRPGWHIEDTAITEKYFGPQYDIHGGGLDLIFPHHD 231 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 +EIAQ E W+H GFLN+ G KMSKS GNFITI ELL + + Sbjct: 232 SEIAQMEAVSGKEPLVQYWMHTGFLNVSGEKMSKSLGNFITIRELL-------KEYSGDT 284 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------WPQTSTSKGIID--- 348 RL +L+THYR PIDF+ L +AE +S+ + + + S+ ++ Sbjct: 285 FRLFVLLTHYRSPIDFSEVSLHQAERNVSRIKNYLENLDEKINDIFEKGNLSEDLLKLAE 344 Query: 349 --------------------PAV-------LSALYNDLNTVSAIQALHKLARESTKN--- 378 PA+ +++ +D +T AI A+ ++S K+ Sbjct: 345 LEENEFDEELINFDYFKSNYPALKEGVNEFFTSMDDDFSTPKAIAAIFSFIKQSNKDLEE 404 Query: 379 -----HDLLPI---FNASAHILGIE--VCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 DLL I F + ILGI+ V K+ + N + ++ + RL L KK+ + Sbjct: 405 DDLIIDDLLAIKHWFKDISQILGIDFFVYKDETSGNEAELLDIIADVRLKLRAEKKYDLS 464 Query: 429 DYIRKQLESKGFILED 444 D IR +L S G + D Sbjct: 465 DEIRDKLISLGIEVSD 480 >gi|313157407|gb|EFR56830.1| cysteine--tRNA ligase [Alistipes sp. HGB5] Length = 491 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 265/493 (53%), Gaps = 55/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ +YNTL R+ EF+ + P + MYVCGPTVY H+G+ARP + FD+L+R L+ Sbjct: 1 MESKLVLYNTLTRRKEEFEPLTPGRVGMYVCGPTVYGDPHLGHARPAVTFDLLFRYLKAC 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + T+++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VAHYYTERYHRA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L P+ +P A+ HI + I ++ I+ G AYE+N + FD NYG S Sbjct: 113 MEALNVETPSIEPYASGHIIEQIEFVKKILADGFAYESNGSVYFDVEKYNRKYNYGRLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K++ DF LWK+++P W SPW G PGWH+ECSAMS+ Sbjct: 173 RNLDDIVANTRELDGQSDKRHSYDFALWKKASPEHIMRWPSPWSEGFPGWHMECSAMSTR 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQS A +A W+HN + + G+KM KS GNF Sbjct: 233 YLGERFDIHGGGMDLMFPHHECEIAQSTAA-LGHDSARYWVHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL + K +++ IR +L YR +DF+ + L AE L + + + Sbjct: 292 ITLEELFTGSHKLLAQAYSPMTIRFFVLQAQYRSTLDFSNEALQAAEKGLDRLMKGVEAL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQAL-------HKLA--RESTKNHDL- 381 G I PA +S A+ +DLN+ I AL ++LA R++ DL Sbjct: 352 GRIKPADVSTVNPAELEERCRAAMDDDLNSPMVISALFDWVRVINQLAEGRQTITAADLE 411 Query: 382 ---LPIFNASAHILGIEVCKEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + + ILG+ K + + ++ +E L+ ERL K ++++D IR Sbjct: 412 TLKTTVRRYAFDILGLRDEKAAGSASGRDYVTPLVEMLLDERLKARAAKDWAASDRIRDG 471 Query: 435 LESKGFILEDYKN 447 L + G ++D K+ Sbjct: 472 LAAAGIRVKDRKD 484 >gi|299782847|gb|ADJ40845.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Lactobacillus fermentum CECT 5716] Length = 473 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 165/484 (34%), Positives = 249/484 (51%), Gaps = 68/484 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + MYVCGPTVY++ HIGNAR ++ FD + R L + Sbjct: 2 LKIYNTLTRQKEEFHPQQAGIVNMYVCGPTVYNYIHIGNARSVVAFDTVRRYLEF--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A+++ ++P + K Q +++DT L T PR Sbjct: 60 QVNYVSNFTDVDDKMIKAAKEQGITVPE------LAYKYIQAYMEDTAALNVEPATTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I +I I+++I G+AY++ ++ + +YG S + +D+ ++G Sbjct: 114 ATENIDGIISFIEDLIEKGYAYQSGGDVYYRARKFAHYGQLSGQSLDDLEVGASEHVSTE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGR-GRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K +P DF LWK + P E W+SP G G PGWHIECS MS+ YLG DIH GG D Sbjct: 174 EVAKKXDPLDFALWKAAKPGEIKWDSPVGGPGAPGWHIECSVMSTKYLGDTLDIHAGGQD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS A + N W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 LEFPHHENEIAQS-EAKTGHRFVNYWMHNGFVTIGRDNEKMSKSLGNFVTVHDLI----- 287 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------------KWPQTSTSK 344 + V+R M T YR PI ++ + L EA+ L K + T Sbjct: 288 --KEVDPQVLRFFMSTTQYRRPIQYSQESLVEAQANLEHLKNTYDNLAYRLKDATSGTDG 345 Query: 345 GI------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD------------------ 380 G+ ++A+ +D+N + I +++L R + + + Sbjct: 346 GVQRQLADFRARFVAAMDDDINVQNGIAVVYELMRFANQYVEQRLVQREPIVAIQLMLKR 405 Query: 381 LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 L+ +F + E+ E I++L+++R K F+ +D IR QL +G Sbjct: 406 LVAVFGVDLAVSATEINDEK--------IKELIEKRNAARAEKDFALSDQIRDQLRDQGI 457 Query: 441 ILED 444 ILED Sbjct: 458 ILED 461 >gi|111021434|ref|YP_704406.1| cysteinyl-tRNA synthetase [Rhodococcus jostii RHA1] gi|123340129|sp|Q0S888|SYC_RHOSR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110820964|gb|ABG96248.1| cysteine--tRNA ligase [Rhodococcus jostii RHA1] Length = 464 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 241/471 (51%), Gaps = 47/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R + +F + P + +Y+CG TV HIG+ R + FDVL R L + + Sbjct: 3 LRLFDTETRALRDFVPLAPGHASVYLCGATVQGDPHIGHVRSGVAFDVLRRWLLAH--DY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDI+DKI+ +A + P + + T + +L L P+ +PR Sbjct: 61 DVAFVRNVTDIEDKILNKAAE--AGRPWWEWAATFERSFTWAY----QQLGVLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ ++Q +I +GHAY A ++ FD S P YGS S K+D+ G E Sbjct: 115 ATGHITQMVEMMQRLIDNGHAYAAGGDVYFDVRSYPRYGSLSGHKLDDVHQGESAGEC-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GGLDL+FPH Sbjct: 173 KRDPRDFTLWKAEKPGEPSWPTPWGRGRPGWHLECSAMAEFYLGAAFDIHCGGLDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA + A W+HNG++ + G KMSKS GN +++ +L+ + Sbjct: 233 HENEIAQAKCAG--DDFAQYWLHNGWVTMGGEKMSKSLGNVLSVPNVLKKVR-------P 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSKWPQTSTSKGIIDPAVLSAL 355 +R + HYR ++++ L E +L ++ G+ A AL Sbjct: 284 QELRYYLGSAHYRSMLEYSDTALDEGAAAFRRIESFVLRTQERAGEVPVGLWTEAFARAL 343 Query: 356 YNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEHLNKN-- 404 +DL +A+ +H RE D + A ILG++ EH + Sbjct: 344 DDDLAVPAALAEVHGKVREGNIALDGGDLEGARGIASQVRAMLGILGVDPLDEHWTQETA 403 Query: 405 --------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + ++ R K ++ AD +R +L G + D N Sbjct: 404 DASAATDALDVLVRAELERRQSARAEKNWAVADEVRDRLIRAGIEVTDTPN 454 >gi|262200969|ref|YP_003272177.1| cysteinyl-tRNA synthetase [Gordonia bronchialis DSM 43247] gi|262084316|gb|ACY20284.1| cysteinyl-tRNA synthetase [Gordonia bronchialis DSM 43247] Length = 463 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 242/475 (50%), Gaps = 48/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R++ +F + P +Y+CG TV HIG+ R I FD+L R L + G Sbjct: 3 LRLYDTATREVRDFVPLHPGRASVYLCGATVQGVPHIGHVRSGIAFDILRRWLAH--GGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDI+DKI+ +A + P + + + ++F L L P+ +PR Sbjct: 61 DVLFVRNVTDIEDKILRKAAEA--GRPWWE----WAATHEREFTDAYDALGVLPPSGEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I QM+ + +I GHAY A+ + FD S+P+YG+ S K+D+ G Sbjct: 115 ATGFITQMVEYMDRLIERGHAYAADGNVYFDVRSLPDYGALSGHKLDDVHQGESAGTG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W +PWG GRPGWH+ECSAM++ LG FDIH GG+DLIFPH Sbjct: 173 KRDPRDFTLWKAAKPDEPSWPTPWGPGRPGWHLECSAMATALLGPEFDIHCGGMDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG++ + G KMSKS GN + I +L+ + A Sbjct: 233 HENEIAQAHGAG--DPFARYWLHNGWVTMGGEKMSKSLGNVVAIPAMLQRVR-------A 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQ--TSTSKGIIDPAVLSAL 355 +R + HYR ++++ LTEA E L + + G IDP AL Sbjct: 284 VELRYYLGSAHYRSMLEYSDGALTEAAAGYRRVESFLQRVVARVGEVAIGEIDPEFGVAL 343 Query: 356 YNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIEVCKEH------ 400 +DL +A+ +H + R + A +LG++ EH Sbjct: 344 DDDLGVPAALAVVHNVVRHGNTALESGDGAAALAAASSVRAMMGVLGVDPLDEHWATAGD 403 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + + + +Q R K +++AD +R +L G + D PD Q Sbjct: 404 DSAATSALDVLVRAELQRRADARAAKDWATADGVRDRLAQAGVEVTD--TPDGAQ 456 >gi|225873812|ref|YP_002755271.1| cysteine--tRNA ligase [Acidobacterium capsulatum ATCC 51196] gi|225791240|gb|ACO31330.1| cysteine--tRNA ligase [Acidobacterium capsulatum ATCC 51196] Length = 491 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 185/511 (36%), Positives = 250/511 (48%), Gaps = 76/511 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NTL +I D RMY CGPTVYD+ HIGN R DVL R L+ Sbjct: 2 IRLFNTLSGQIEALTPADGQTFRMYACGPTVYDYGHIGNFRTFCHVDVLRRALQLE--GI 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N+TD+DDKII A + +PI + T K Q F +D L P R Sbjct: 60 TVRHVMNVTDVDDKIIRNATR--AGVPIAE----YTKKYEQAFFEDLHALGVAEPEVIAR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT HIP M+ LI+ + AY+ + F + +YG S++ + G RV ++ Sbjct: 114 ATEHIPAMVKLIEQLAAQDIAYKTEDGSWYFRIARFKDYGKLSKKDLTGISDGARVDVDE 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 Y K + DF LWK P E WE+P G GRPGWHIECSAM+ YLG+ D+HGGG DL+F Sbjct: 174 YEKDSARDFALWKSPKPGEHFWETPLGAGRPGWHIECSAMAMEYLGESIDLHGGGEDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + A W H FL +EGRKMSKS GNF T+ +LL + + Sbjct: 234 PHHENEIAQSECASH-KTFARHWFHVRFLLVEGRKMSKSEGNFYTLRDLLL------KGY 286 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRL-TEAEILLSKWPQT------STSKG 345 A IR+ ++ YR+ ++FT V+RL T + +L+ P T ST Sbjct: 287 KASAIRMLLISVPYRQQLNFTFEGLAAETTAVERLRTFYQRMLTVTPATEKNAALSTETE 346 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARE----------STKN--------HDLLPIFN- 386 + L NDLNT A A+ L R ST+N + +FN Sbjct: 347 KARKEFRAGLENDLNTAEARAAIFDLVRAGNAAADAGTLSTENVAEILAVLREFDSVFNV 406 Query: 387 -----ASAHILGIEVCKEHLNKNISI------------AIEKLVQERLILLKMKKFSSAD 429 A+ +E ++ N + I+ LV ER + + F+ AD Sbjct: 407 LEDRDAAITKFALEWAEQEGRLNEAAHEVLAQRGLSDEQIQALVDERTKAKRARNFARAD 466 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR +L KG ++ED K RWK+K Sbjct: 467 QIRNELAEKGIVIEDSKEG------VRWKRK 491 >gi|206602428|gb|EDZ38909.1| Cysteinyl-tRNA synthetase, class Ia [Leptospirillum sp. Group II '5-way CG'] Length = 490 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 181/484 (37%), Positives = 249/484 (51%), Gaps = 51/484 (10%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY 68 NTL +K P + MYVCG TVYD H+G+AR VFD+L+RLL G + V Y Sbjct: 21 NTLTQKTELLSPRIPGEVTMYVCGVTVYDDCHLGHARSQTVFDLLHRLL-LRLGYR-VRY 78 Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 VRNITDIDDKII +A++ I+ IT F +D RL L P +PRAT + Sbjct: 79 VRNITDIDDKIIRKAQE------TGRTITEITDIYIDSFQRDMRRLGILPPDKEPRATLY 132 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 + MI LI ++ G AY+ N++ F YG S +K+DE + G R+ K++P Sbjct: 133 LDPMIRLIGTLLDKGFAYKKGNDVYFRVRKYGAYGELSHQKLDELQSGARIAADEEKEDP 192 Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 DF LWK + EP + + +G GRPGWHIECSAMS LG+ DIHGGG+DL+FPHHENE Sbjct: 193 LDFALWKGAKTGEPSYPAFFGEGRPGWHIECSAMSLSELGETIDIHGGGMDLMFPHHENE 252 Query: 249 IAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG---GRSWPAP 305 AQS A ++ IWIHNGF+ L KMSKS GN I ET F R W Sbjct: 253 RAQSESATG-KRFVGIWIHNGFVTLNEEKMSKSLGNIFRIRTFFETSPFPEGVTREW--- 308 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSALY 356 +R +L THY P+D T + L A+ L +G + L+AL Sbjct: 309 -LRAFLLSTHYASPVDLTDENLAHAKNALDSLYLFKDRLDSMFGEAREGPMTQEFLAALC 367 Query: 357 NDLNTVSAIQALHKLAR------------ESTKNHDLLPIFNASAHILGIEVC------- 397 +D++T A + LH+ E + D+ +F + LGI Sbjct: 368 HDMDTPVAFRILHEAKNTLNPLLGALGDVEEDRLSDVRALFEVAKKTLGILTLPASEWIY 427 Query: 398 --KEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E + S+ +++LV ER + K ++ AD IR++L+ G++LED NP Sbjct: 428 GKGEKTGRAESLPPEEVDRLVLEREKARREKDYARADAIRERLKKAGYLLED--NPGGLP 485 Query: 453 RMTR 456 R+ + Sbjct: 486 RIRK 489 >gi|256397251|ref|YP_003118815.1| cysteinyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] gi|256363477|gb|ACU76974.1| cysteinyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] Length = 470 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 161/474 (33%), Positives = 241/474 (50%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R EF + P + +Y+CG TV HIG+ R + FD+ R L Y Sbjct: 3 LRLYDTAARATREFVPVTPGKVSIYLCGATVQAPPHIGHIRSGVSFDIARRWLEYR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKII +A ++ + N F + L C P+ +PR Sbjct: 61 AVTFVRNVTDIDDKIIRKAAEQKVET------WRVAQANEYAFQQAYRLLGCEDPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEK 182 AT HIP+M+ ++ +I GHAY A ++ F S+P YG+ + +D E++ V Sbjct: 115 ATGHIPEMVAMMHKLIYDGHAYAAGGDVYFRVRSLPAYGALAHFSVDDLEEQPAEDVAPT 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++P DF LWK S P EP W++PWG GRPGWH+ECSAM+ YLG FDIHGGG+DLIF Sbjct: 175 THKEDPHDFALWKASKPGEPFWDTPWGPGRPGWHLECSAMAHRYLGTNFDIHGGGVDLIF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS +K N W+HNG++ L+ KMSKS GN + + EL + + Sbjct: 235 PHHENEQAQSHAFG--DKFTNYWMHNGWVTLKNEKMSKSLGNSVLVTEL-------AKQY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-SKGIIDPA---------VL 352 V+R + HYR I++T L EA+ S+ T + + P Sbjct: 286 RPVVMRYYLGTPHYRSMIEYTEDSLREADAAYSRIEGFVTRALETVGPTEAAARVPAAFA 345 Query: 353 SALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASA----HILGIEVCKE---- 399 ++ +D A+ L+ RE + + + + AS ILG+ E Sbjct: 346 ESMDDDFGVPGAVAVLYTTVREGNTALAGGDKEGVATHLASVLRMLDILGLNPLAEPWAG 405 Query: 400 ---------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + ++ +++R + K ++++D IR +L G +ED Sbjct: 406 ADGAAGSGTDLRPVVDALVKVALEQRQAARERKDYAASDAIRDRLSQAGVTVED 459 >gi|148239954|ref|YP_001225341.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 7803] gi|187631643|sp|A5GM79|SYC_SYNPW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|147848493|emb|CAK24044.1| Cysteinyl-tRNA synthetase [Synechococcus sp. WH 7803] Length = 499 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 179/504 (35%), Positives = 247/504 (49%), Gaps = 76/504 (15%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++ NTL R+ FQ + + +Y CG TVYD H+G+AR I +DVL R L Sbjct: 1 MPVSLRFTNTLTRRTEPFQPLKDGQVSIYCCGVTVYDLCHLGHARSYINWDVLRRYL--I 58 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VT+V+N TDIDDKI++RA +E S+ ++ +N F D L L P Sbjct: 59 WSGYAVTFVQNFTDIDDKILKRAAEEGSSM------EAVSERNIDAFHADMDALGILRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 PRAT + + LI + G AY A+ ++ F YG S R + +Q+ R Sbjct: 113 RMPRATRCLEGIRTLIAELEAKGAAYSADGDVYFAVMKHAGYGKLSGRDLADQQTNADGR 172 Query: 179 VP--EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 V E+ K++P DF LWK + EP + SPWG GRPGWHIECSAM LG DIH G Sbjct: 173 VADAEEARKQHPFDFALWKGAKAGEPSFPSPWGNGRPGWHIECSAMVREELGDTIDIHLG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL+FPHHENEIAQS A ++ A +W+HNG +N+ G KMSKS GNF TI LLE+ Sbjct: 233 GADLVFPHHENEIAQSEAATG-QELARVWLHNGMVNVGGEKMSKSLGNFTTIRALLES-- 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL---- 352 A +RL +L HYR+P+DFT + L EA K + S G + L Sbjct: 290 ----GLSAMTLRLFVLQAHYRKPLDFTAEAL-EAATTGWKGLNAALSLGDLHAEALGWTP 344 Query: 353 ----------------------------SALYNDLNTVSAIQALHKLA-----------R 373 +A+ +DLN+ A+ L +LA R Sbjct: 345 AEPMGNDAVVASESSAIDTLLSARQRFSAAMDDDLNSSGALAVLFELARPLRALANRLDR 404 Query: 374 ESTKNH------DLLP---IFNASAHILGIEV----CKEHLNKNISIAIEKLVQERLILL 420 NH +LL + A +LG+ + E + S +IE + R + Sbjct: 405 GDAPNHNDDDGQELLQRWLLLRELAAVLGLRLEHPSAPEEESDLDSQSIEAAIDARRLAK 464 Query: 421 KMKKFSSADYIRKQLESKGFILED 444 + K F+ AD IR +L ++G L D Sbjct: 465 QSKDFAEADRIRAELSAQGIELID 488 >gi|227432961|ref|ZP_03914903.1| cysteinyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351307|gb|EEJ41591.1| cysteinyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 468 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 173/477 (36%), Positives = 246/477 (51%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I I+MYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IYVYNTLSREKEVFKPITAGKIKMYVCGPTVYNYIHIGNARSAIAFDTVRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII RA++E S + +K F +DT L T + R Sbjct: 61 -VNYVSNFTDVDDKIINRAQEEGISELE------VANKYADAFDEDTLPLNIKPATVRSR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT IP++I ++++I G+AYE+ ++ F YG + + + E + Sbjct: 114 ATEVIPEIIEFVKDLIDKGYAYESEGDVYFRAKKFKGYGILAHQDLAEMEANAAGRLNDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEP--GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K++P DF +WK + P E W SPWG GRPGWHIECS M+ YL DIHGGG+ Sbjct: 174 ETIRKEDPIDFAVWK-NEPREGVISWSSPWGNGRPGWHIECSVMAQKYLSNTIDIHGGGI 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHH NEIAQS A +K N W+HNGF+N+ KMSKS GNF T++++L T Sbjct: 233 DLAFPHHTNEIAQS-EARTGQKFVNYWMHNGFVNVNNEKMSKSLGNFTTLHDMLAT---- 287 Query: 299 GRSWPAP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGII 347 + P VIR + T YR PI++ L +A + L + +TS G Sbjct: 288 ---YDDPMVIRYLLTTTQYRRPINYEASTLEQARLELERIRTAYRNLMFRAETSEPGGNE 344 Query: 348 DPAVL---------SALYNDLNTVSAIQALHKLA--------RESTKNHDLLPIFNASAH 390 D L A+ +D NT +A+ A+ +L R + K + + A Sbjct: 345 DVETLIEVQKKAFDQAMDDDFNTPNALAAIFELVSIGNTYTERNTVKVDTVQHLLGTMAD 404 Query: 391 IL---GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L GIE N+ ++ +L+ +R++ + F +D +R QL+ G +ED Sbjct: 405 LLSVFGIEGLDG--NEELTTKQRELLDKRVLARESHDFEESDLLRNQLKEVGIFVED 459 >gi|320527638|ref|ZP_08028812.1| cysteinyl-tRNA synthetase [Solobacterium moorei F0204] gi|320131959|gb|EFW24515.1| cysteinyl-tRNA synthetase [Solobacterium moorei F0204] Length = 444 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/464 (35%), Positives = 244/464 (52%), Gaps = 48/464 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT +I EF+ I ++ MYVCGPTVY++AHIGNARPMIVFDVL RL Sbjct: 2 IRLYNTKTLQIEEFKPIHEGHVDMYVCGPTVYNYAHIGNARPMIVFDVLKRLFEA--EGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII++A +E N ++I + + + T L P PR Sbjct: 60 SVTYVSNFTDVDDKIIKKAAEE------NTTEAVIAQRYIDAYQEVRTLLNTELPDITPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++I I ++ GHAYEAN ++ F S+P YG S + +D+ + G R+ Sbjct: 114 VTETMDKIIDFIDQLVKTGHAYEANGDVYFSVESVPTYGEISHQHMDQLEAGARIETNDQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+ T M W SPWG GRPGWH EC M + +G DIHGGG+DL FPH Sbjct: 174 KKNPYDFALWKK-TDMGIKWNSPWGEGRPGWHTECVVMINDNIGDCIDIHGGGMDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ A AN W+HN +N++G+KMSKS GN + +++ S Sbjct: 233 HENEAAQQ-EAMHGNTLANYWVHNAMVNIDGQKMSKSLGNTMWAKDVV-------LSLGT 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLT----EAEILLSKWPQTSTSKGIIDPAV--------- 351 + R + HYR+ ++F+ + + E + +L+ Q + D A+ Sbjct: 285 NLTRWLVSSVHYRKELNFSDETIETARKELDKVLTPLKQAYIKAALADNAMGDDYDKDSY 344 Query: 352 ---LSALYNDLNTVSA-------IQALHKLARESTKNHDLLPIFNASA----HILGIEVC 397 L L +D+NT +A ++ L++ R+ + + +++ + ++LGI V Sbjct: 345 RAFLDCLDDDMNTPNAYAVIFETVKKLNQTLRQREIDFAQVALYSNAVEKMLNVLGIVVD 404 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 K + + K Q + K F +AD R +L KG + Sbjct: 405 KPVIGEAEKELFAKWNQAK----ADKDFDTADKYRNELAEKGLL 444 >gi|300744321|ref|ZP_07073340.1| cysteine--tRNA ligase [Rothia dentocariosa M567] gi|300380046|gb|EFJ76610.1| cysteine--tRNA ligase [Rothia dentocariosa M567] Length = 476 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/481 (34%), Positives = 249/481 (51%), Gaps = 59/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y++ I +F+ + P R+Y CG TV H+G+ R +VFD L R +RY G K Sbjct: 3 MRFYDSATSSIRDFEPVVPGEARIYYCGATVQGEPHVGHIRSALVFDQLARWMRYR-GFK 61 Query: 65 CVTYVRNITDIDDKIIERARQ--------EHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 VT VRN+TDIDDKI+ ++ + EHP N+ + + + F + L Sbjct: 62 -VTTVRNVTDIDDKILAKSVESAQPTYTGEHP----NEQWWALAYRYEKVFARAYATLGI 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQ 173 PT++PRAT HIP+M LIQ +I GHAY A + ++ FD S YG+ +R+ +D+ Sbjct: 117 DPPTYEPRATGHIPEMFELIQRLIDRGHAYPALDDSGDVYFDVRSWEQYGALTRQSVDDM 176 Query: 174 KMGTRVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 + + K++P DF LWK P+ W+SPWGRGRPGWH+ECSAM+ YLGK Sbjct: 177 QDSADADPR-GKRDPRDFALWKGYKEGEPLTAAWDSPWGRGRPGWHLECSAMAGKYLGKR 235 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDL FPHHENE+AQS A + AN W+HNG + EG KMSKS GN I+ + Sbjct: 236 FDIHGGGLDLRFPHHENELAQSTAAG--DDFANFWMHNGMVTYEGEKMSKSIGNTISPVQ 293 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGII 347 +L+ + V+R + HYR +D+ L EA + + + + + + Sbjct: 294 MLQQAR-------PLVVRYYLGSAHYRSVLDYRPTSLEEARVAIERVEAFLAATLELMVP 346 Query: 348 DPA-------VLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILG 393 +P AL +D+N A+ LH+ R + A A++LG Sbjct: 347 NPQDRRVPQDFADALDDDMNIPRALAVLHEQTRAGNAALAAGADASEFANAVWAMANVLG 406 Query: 394 I----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + EH + + I ++++R K +++AD +R L + G ++ Sbjct: 407 LISLMNLDGSGASGAEH--QALDALIHTILEQRASARAEKDWATADRMRDVLAAAGITVK 464 Query: 444 D 444 D Sbjct: 465 D 465 >gi|21672736|ref|NP_660803.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654284|sp|P46241|SYC_BUCAP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21623381|gb|AAM68014.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 463 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 176/467 (37%), Positives = 254/467 (54%), Gaps = 43/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT K F+ I I +YVCG TVYDF HIG+AR +VFD++ R LR + Sbjct: 2 LKIFNTATSKKEIFKPIKNKKINLYVCGVTVYDFCHIGHARTFVVFDMIVRYLRLIGFQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII ++ +E I S T+ ++ KD + L P +PR Sbjct: 61 -VKYIRNITDIDDKIILKSLKEKIDI------SAFTNIMIKEMNKDFSLLGISPPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 TN+I +I +I+ +I + +AY + ++IF +S YG+ SR+ +D+ GTR+ Sbjct: 114 VTNYIIDIIKVIEKLIKNKNAYVNDHGDVIFSINSDKFYGTLSRQSLDKLISGTRISIDK 173 Query: 184 HKKNPADFILWKRSTPMEPG-WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKN +DFILWK+S E W SPWG+GRPGWHIEC+A+++ + DIHGGG DL+F Sbjct: 174 EKKNSSDFILWKKSKKEEKFSWNSPWGKGRPGWHIECTAITNVFFKDYIDIHGGGSDLLF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEI+QS C ++ W+H+G + ++ +KMSKS GN + ++LE + Sbjct: 234 PHHENEISQSRCLNK-NFRVKFWMHSGLVIIKNQKMSKSLGNSFFLKDVLE-------KY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPA--------VLS 353 A V+R L THYR PI +T + L ++E+ L + +K I DP Sbjct: 286 EAEVLRFFFLSTHYRHPIYYTEENLKKSEMSLEYLYVTLYGTKPIFDPIEGVNFEIDFFE 345 Query: 354 ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILG--IEVCKEHLNK 403 AL +D NT A L KLAR + +K++ A LG + + L K Sbjct: 346 ALNDDFNTPQAFSILFKLARKINYLKKIDLSKSNFFAFRLQKLAGYLGFLLNTSQYFLQK 405 Query: 404 NISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + IE L+++R K K + AD +R +L ILED Sbjct: 406 KLPFDEEIIKKIESLIEKRNFARKSKLWKEADKLRDKLIKLNVILED 452 >gi|187479046|ref|YP_787070.1| cysteinyl-tRNA synthetase [Bordetella avium 197N] gi|109894885|sp|Q2KX38|SYC_BORA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115423632|emb|CAJ50172.1| cysteinyl-tRNA synthetase [Bordetella avium 197N] Length = 483 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 175/495 (35%), Positives = 252/495 (50%), Gaps = 54/495 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R F+ + +R+YVCG TVYD+ H+G+AR ++ FDV+ R LR Sbjct: 2 LHIYNTLSRTKETFKPVHAGEVRIYVCGMTVYDYCHLGHARMLVAFDVVQRWLRA--SGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA Q + +T D LA P H+PR Sbjct: 60 AVNYVRNITDIDDKIIRRAVQ------TGRRMHEVTDYFIAAMHADERALAVERPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +MI +I + +G AY+A++ ++ + YG S + +D+ + G RV Sbjct: 114 ATAYVGEMIDIIGRLEKNGLAYQADDGDVNYAVRGFQGYGKLSGKSLDDLRAGERVAVGS 173 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W+SP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 SKRDPLDFVLWKSAKEEEPPETKWDSPYGFGRPGWHIECSAMSKSLLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK---- 296 FPHHENEIAQ+ A ANIW+H G L ++ KMSKS GNF TI + + + Sbjct: 234 KFPHHENEIAQTEGA-FGGTLANIWMHCGPLMVDAEKMSKSLGNFRTIRQTIAQGEAQDG 292 Query: 297 ---FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGI-- 346 + A ++R ++ HYR P ++T L +A+ L + Q T GI Sbjct: 293 EADYQANPREAEMLRFFIVRNHYRSPQNYTPDNLVDAQNALDRLYQALANVTPDVAGIDW 352 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGI------- 394 A +A+ +D N+ A+ AL +LA + + D A +LG+ Sbjct: 353 NEAQAQAFKAAMNDDFNSSGAVAALFELAGQVNRERDSRAAGQLKALGAVLGLLQQDPAV 412 Query: 395 ----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ ++ + IE L+ ER + F+ AD IR +L + G L+D Sbjct: 413 YFQSSTRYSSAGMQQGASQMDAARIEALIAERGQAKLSRDFARADAIRAELRAAGIELDD 472 Query: 445 YKNPDNGQRMTRWKQ 459 MT+W++ Sbjct: 473 KPGG-----MTQWRR 482 >gi|326202353|ref|ZP_08192222.1| cysteinyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782] gi|325987471|gb|EGD48298.1| cysteinyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782] Length = 461 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 245/471 (52%), Gaps = 45/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F+ ID +R+Y CGPTVY++AHIGN R + D+L R+L Y Sbjct: 1 MKVYNTLSRQKEDFKPIDDKEVRIYSCGPTVYNYAHIGNLRTYVFMDILRRVLEY--NGY 58 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 + +V NITD+ +DK+I+ AR E P+ I T F+KD L Sbjct: 59 SLKHVMNITDVGHLVSDEDEGEDKMIKGAR-EQKKTPLE-----IAEYYTNIFMKDIKAL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P P+AT HIP+M+ + ++ G YE ++ I FD YG SR +++Q Sbjct: 113 NIQVPEIVPKATEHIPEMLEFVHGLVDKGFGYETSDGIYFDIQKFEGYGKLSRANLEDQI 172 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP--GWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 G RV K +PADF +WK++ P E W S WG G PGWHIECSAM YLG FD Sbjct: 173 AGARVEVNEEKHHPADFAIWKKA-PKEHIMQWPSEWGMGYPGWHIECSAMGRKYLGDTFD 231 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTA-NIWIHNGFLNLEGRKMSKSNGNFITINEL 291 IH GG+D I HHENEIAQS +EK+A N W+H F+ + KMSKS GN TI+ L Sbjct: 232 IHTGGVDHIPVHHENEIAQSEAL--LEKSAVNYWMHGEFMMVNNGKMSKSLGNTYTIDNL 289 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----KGII 347 +E + + R L HYR ++FT + + A++ ++ + S K + Sbjct: 290 ME------KGYDPMAFRYMCLNAHYRNKLNFTWEVMQSAQVSYDRFVEGVLSHKDGKEQL 343 Query: 348 DPAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 D AV+ A+ +DLN A+ R K+ ++ + I G + K+ Sbjct: 344 DSAVVKEFLSDFEDAINDDLNIPKALGVAWNAIRYGKKSQEIYELLTKMNKIFGFNLDKK 403 Query: 400 HLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + IS ++KL++ER K + +D IR +L++ GF +ED N Sbjct: 404 KDSTGETEISPEVQKLLEERQEARAQKNWKRSDEIRDELKAMGFAVEDTAN 454 >gi|172041351|ref|YP_001801065.1| cysteinyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109] gi|171852655|emb|CAQ05631.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 487 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 169/507 (33%), Positives = 248/507 (48%), Gaps = 94/507 (18%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRY 59 M +++IY+T RK+ EF + + +Y+CG TV HIG+ R + FDVL R LL Sbjct: 1 MPLQLRIYDTASRKVREFTPLREGKVSIYLCGATVQSIPHIGHVRSGVAFDVLRRWLLAQ 60 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 Y V +VRN+TDIDDKI+ +A + N + + + F +L L P Sbjct: 61 GYD---VAFVRNVTDIDDKILTKAAEN------NRPWWEWAATHERAFTWAYDQLGVLPP 111 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT H+PQMI +Q II +GH Y A+ + +SI NYG S +K+DE G Sbjct: 112 SVEPRATGHVPQMIEYMQRIIDNGHGYAADGNVYAQPASIENYGFLSGQKLDELDQGESA 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 KKNP DF +WK + P EP W++PWGRGRPGWHIECSAM+++YLG FDIH GGLD Sbjct: 172 --GTGKKNPRDFTMWKAAKPGEPAWDTPWGRGRPGWHIECSAMATNYLGGEFDIHAGGLD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENE AQ+ A + A W+HNG++ + G KMSKS GN +++ +LE + Sbjct: 230 LQFPHHENEAAQATAAG--DGFAQYWMHNGWVTMSGEKMSKSLGNVLSVPNILEKVR--- 284 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFT----------------------------------- 323 PV +R + HYR ++++ Sbjct: 285 -----PVELRYYLGSGHYRSMLEYSESALAEAAAGYRRIEKFLLRAAAYLAAIEDDAPAS 339 Query: 324 ----VQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH 379 R E + + +WP+ K + +DL A+ +H RE K Sbjct: 340 AGDQAARGPEQLVAVGQWPEAFAEK----------MNDDLAVPQALAVIHDAVREGNKAL 389 Query: 380 DLLPI---------FNASAHILGIEVCKEH-LNKNIS--------IAIEKLVQE----RL 417 ++ A +LG++ EH L + ++ A++ LVQ+ R Sbjct: 390 EVKDTETVMRVAGQVRAMMSVLGVDPFDEHWLEQTMAGQGSSAAMTALDSLVQDDLQRRA 449 Query: 418 ILLKMKKFSSADYIRKQLESKGFILED 444 K ++ AD +R +L + G + D Sbjct: 450 EARAEKNWAVADEVRDRLTAAGIEVTD 476 >gi|304436605|ref|ZP_07396574.1| cysteine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370301|gb|EFM23957.1| cysteine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 476 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 140/334 (41%), Positives = 195/334 (58%), Gaps = 17/334 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L + G + Sbjct: 2 ITVYNTMTRKKEEFHPLREGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRYLAHK-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII A +E + I+ + + L PR Sbjct: 61 -VRYIQNFTDVDDKIIHAANREGVTW------KEISDRYIAAYFTAMDALNVHRADVFPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + + +I +I+ +I G+AY ++ + + YG S R +D+ + G RV Sbjct: 114 VSETMDDIIRMIETLIERGYAYVTEAGDVYYSVEAFAPYGCLSGRSLDDMEAGARVEVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG+ FD HGGG DLIFP Sbjct: 174 TKHHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSVKYLGEAFDFHGGGSDLIFP 233 Query: 244 HHENEIAQSC-CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ+ C D K A W+HNGF+ ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQADPCIDADIKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KEY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 P VIR +L THYR P+DF+ +RL EA+ L++ Sbjct: 287 PGEVIRFFILQTHYRSPLDFSDERLKEAQAALAR 320 >gi|330834076|ref|YP_004408804.1| cysteinyl-tRNA synthetase [Metallosphaera cuprina Ar-4] gi|329566215|gb|AEB94320.1| cysteinyl-tRNA synthetase [Metallosphaera cuprina Ar-4] Length = 466 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 172/478 (35%), Positives = 254/478 (53%), Gaps = 57/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL R+I F +P ++RMYVCGPTVYD HIG+ R + FD + R LR Sbjct: 2 LRVFNTLGRRIDSFIPNEPHSVRMYVCGPTVYDEVHIGHGRTFVSFDAISRYLRL--KGF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V+NITDIDDKII +A+ + + + ++ T+ +++ L H P+ Sbjct: 60 NVIRVQNITDIDDKIINKAKS------VGKSWNEVSEYYTKSYLEMINLLKVKIDIH-PK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HI ++I +Q +I GHAY AN + FD + P YG S + +E G + ++ Sbjct: 113 VSSHIKEIIDFVQGLIDRGHAYVANGSVYFDVDTYPKYGELSNIRKEEWDQGEEIVKE-- 170 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK P EP W+SPWG+GRPGWHIECS MS+ YLG DIHGGG+DL+FPH Sbjct: 171 KKNPYDFALWKAYKPGEPFWDSPWGKGRPGWHIECSTMSTRYLGTKIDIHGGGIDLVFPH 230 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ+ + W+H FL ++ KMSKS GN I + E + K+G Sbjct: 231 HENERAQTESITN-DTWVKYWMHVAFLTIKKEKMSKSKGNIIPLKEAI--AKYG-----P 282 Query: 305 PVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSK----WPQTST------SK 344 +R L +HYR PI++ ++QRL +A +L K PQ ++ Sbjct: 283 STLRYWFLSSHYRNPIEYSDDVLEQSAKSLQRLKDAVSILRKIILEGPQHYAKESEIKTQ 342 Query: 345 GIIDPAVL---SALYNDLNTVSAIQALHKLAR----ESTKNHDLLPI---------FNAS 388 I A+L +A+ +D NT +A+ A+H+LA + + D+L FN Sbjct: 343 AEIFGAILNFDNAMEDDFNTANALTAIHELASIVFTKLQYSQDVLGAIMALDGFRKFNDV 402 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ E E IS I +++ R L + + + +D IR+ L G + D K Sbjct: 403 FAVMDEEFSSEM--DRISSIINSVIEIRNYLRERQMYELSDKIRESLMKAGIKVLDSK 458 >gi|256833282|ref|YP_003162009.1| cysteinyl-tRNA synthetase [Jonesia denitrificans DSM 20603] gi|256686813|gb|ACV09706.1| cysteinyl-tRNA synthetase [Jonesia denitrificans DSM 20603] Length = 469 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 247/474 (52%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT R + F+ + + +YVCG TV HIG+ R + FDVL R L+ + Sbjct: 3 LRLFNTATRTVDPFEPREAGKVGVYVCGATVQAAPHIGHMRSAVAFDVLVRWLQRAGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RN+TDIDDKI+ + S A S N Q F + L L PT++PR Sbjct: 62 -VTYIRNVTDIDDKILAK------SADAKMAWWAWASLNEQAFTEAYDALGNLRPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ MI L+ +I GHAY ++ + FDT S P YG+ + + IDE+ + T Sbjct: 115 ATGHMLDMIDLMGTLIERGHAYVSSPGNVYFDTQSWPQYGALTNQHIDERVLSTADVSDP 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF LWK EP W +P+G GRPGWH+ECSAM+ YLG FDIHGGGLDL Sbjct: 175 NKRDPRDFALWKAPKEGEPSTASWPTPYGTGRPGWHLECSAMARRYLGSEFDIHGGGLDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE AQS A + A +W+H+ ++ G KMSKS GN + + E+L+ Sbjct: 235 RFPHHENEQAQSHAAG--DGFARVWMHSAWVTQGGAKMSKSLGNGLLVTEVLKQA----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDP----- 349 PAPV+R A+ HYR +++T Q L +A + ++ + + P Sbjct: 288 --PAPVLRFALASVHYRSMVEWTQQSLIDAGVAWDRFTGVYRRAVETVGDKVTVPVTTVE 345 Query: 350 ---AVLSALYNDLNTVSAIQALH---KLARESTKNHDLLPIFNASAH------ILGIEVC 397 A AL +DLN + L+ K A + N++L +A +LG++ Sbjct: 346 LPQAFTDALNDDLNVAQGLAVLYDSVKTANTALANNNLPEATHAVLQVRAMLDVLGLDPA 405 Query: 398 K---EHLNKNISIAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILED 444 + + A+ LVQ +L K ++++D IR L + G ++ED Sbjct: 406 QWAAPDTDSRADSALASLVQGQLDRRAQARADKDWATSDAIRDALAAAGIVVED 459 >gi|227496370|ref|ZP_03926660.1| cysteine--tRNA ligase [Actinomyces urogenitalis DSM 15434] gi|226834097|gb|EEH66480.1| cysteine--tRNA ligase [Actinomyces urogenitalis DSM 15434] Length = 496 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 258/512 (50%), Gaps = 86/512 (16%) Query: 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y++ R + + P + +Y+CG TV HIG+ R I FDVL R L E Sbjct: 9 LRLYDSAARAVVPLAPTVTPGTVAIYLCGATVQGSPHIGHMRSGIAFDVLRRWL-----E 63 Query: 64 KC---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +C V VRN+TDIDDKI+ ++ P +P + ++F L PT Sbjct: 64 RCGQHVLLVRNVTDIDDKILAKSAAATPPVPW----WAWAQRFEREFDAAYRALGVTPPT 119 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY--EANNEIIFDTSSIPNYGSFSRRKID------- 171 ++PRAT H+PQMI LIQ ++ GHAY EA N + FD S+P+YGS + +++D Sbjct: 120 YEPRATGHVPQMIDLIQRLLDAGHAYVGEAGN-VYFDVRSLPDYGSLTNQRVDDLATTED 178 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLG 228 E ++ V + K++P DF LWK++ P EP W++PWGRGRPGWH+ECSAMS YLG Sbjct: 179 ESQLDEDV--EADKRDPRDFALWKKAKPGEPADAAWDTPWGRGRPGWHLECSAMSRRYLG 236 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGG+DL FPHHENE AQS A A W+HN ++ ++G KMSKS GN + + Sbjct: 237 ESFDIHGGGIDLRFPHHENEQAQSHGAGW--GFARRWVHNAWVTVKGEKMSKSLGNSLVV 294 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 ELL +S+ V+RLA+ HYR ++F+ + L A L + T + Sbjct: 295 AELL-------KSYDPAVLRLALGTVHYRSTVEFSEETLDSAAALWERLAGAVTRAAEVS 347 Query: 349 PAV----------------LSALYNDLNTVSAIQALHKL-----------ARESTKNHDL 381 V ++A+ +DLN A+ +H A ++T+ + Sbjct: 348 DDVDAPGEQLRERALPAEYVAAMDDDLNLAGAMAVVHATLKRLNTALAASAVDATEVGEA 407 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA----------------IEKLVQERLILLKMKKF 425 A ++G++ E + A + L+++R K + Sbjct: 408 ALDLRAELDVMGLDPLAEPWRSRVLGAGAAGGSDAAMSALDHLVTALIEDRAAARAAKDW 467 Query: 426 SSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + AD +R QL + G ++ED G RW Sbjct: 468 ARADALRDQLTAAGVVVED------GADGARW 493 >gi|210623152|ref|ZP_03293607.1| hypothetical protein CLOHIR_01557 [Clostridium hiranonis DSM 13275] gi|210153796|gb|EEA84802.1| hypothetical protein CLOHIR_01557 [Clostridium hiranonis DSM 13275] Length = 420 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 159/428 (37%), Positives = 224/428 (52%), Gaps = 50/428 (11%) Query: 49 VFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 +FD L R L Y + VTYV+N TD+DDKII+R+ +E S P + K +++ Sbjct: 1 MFDTLRRYLEYQGYD--VTYVQNFTDVDDKIIKRSHEEGIS-P-----EEVAEKYIKEYF 52 Query: 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR 168 D L T P+ T +IPQ+I IQ + G+AY N ++ FDT YG S + Sbjct: 53 VDCDGLGIKRATVHPQVTQNIPQIIEFIQELEEKGYAYAVNGDVYFDTRKFEGYGKLSGQ 112 Query: 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 ID+ + G R+ K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG Sbjct: 113 NIDDLEAGARIEVNEQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLG 172 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + DIH GG DL FPHHENEIAQS A + A W+HNG++N+ KMSKS GNF T+ Sbjct: 173 ETIDIHAGGQDLTFPHHENEIAQS-EARSGKPFAKYWMHNGYINVNNEKMSKSKGNFFTV 231 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------- 337 ++ + + ++R +L HY+ P++F+ L +A L + Sbjct: 232 RDI-------SKKYDLEIVRFFLLSAHYKSPVNFSDDLLAQAGAGLERLYNTKEKLVFTL 284 Query: 338 -----PQTSTSKGIIDP------AVLSALYNDLNTVSAIQALHKLARESTKNHD------ 380 T K +++ + + +DLNT AI A+ +L++ N D Sbjct: 285 SHLEGEMTDAEKALVEELDGFRKKFVEVMDDDLNTADAITAIFELSKFINLNVDENSSKE 344 Query: 381 ----LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 L FN +L I V KE N ++ +E L+Q+R K K F+ AD IR+QL Sbjct: 345 FAEKCLAEFNELTGVLNI-VNKEKDN-SVDAEVEALIQQRTDAKKNKDFAKADAIRQQLL 402 Query: 437 SKGFILED 444 G +LED Sbjct: 403 DMGIVLED 410 >gi|327400878|ref|YP_004341717.1| cysteinyl-tRNA synthetase [Archaeoglobus veneficus SNP6] gi|327316386|gb|AEA47002.1| cysteinyl-tRNA synthetase [Archaeoglobus veneficus SNP6] Length = 471 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 177/495 (35%), Positives = 257/495 (51%), Gaps = 67/495 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL ++ E + +D + +R+YVCG T YD++HIG+AR ++FD R L + E Sbjct: 1 MRLYNTLTKREEELK-LDKT-VRIYVCGITAYDYSHIGHARSAVIFDTFRRYLEWKGHE- 57 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKI+ RA E N + K ++ KD L T+ P+ Sbjct: 58 -VIYVQNFTDVDDKIVRRAVAE------NRTQKEVAEKFIAEYFKDMEALNVRKATYHPK 110 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 T HI +I + +I G+AYE N ++ F S +YG S ++E P+ Sbjct: 111 VTEHISDIIQAVSELIKKGYAYEVGGENKDVYFHVPSFSHYGELSGMSLEELNRHRIEPD 170 Query: 182 KYHKKNPADFILWKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + KK+ DF LWK + + ++SPWG GRPGWHIECS M++ YLG FDIHGGG Sbjct: 171 E-RKKDVKDFALWKAAKEEDIKAKAVFDSPWGLGRPGWHIECSVMAAKYLGIPFDIHGGG 229 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENE AQS IE WIHN F+ ++G KMSKS GN + I ++L+ K+ Sbjct: 230 KDLIFPHHENERAQSYALHGIE-PVRYWIHNDFVTIKGEKMSKSLGNIVKIRDVLQ--KY 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------S 341 G V+R +L HYR PID++ + + AE S T Sbjct: 287 NG-----EVLRYFLLSAHYRSPIDYSEESIERAEKAYSALRNTLELIDMEIAAFKTFGGG 341 Query: 342 TSKGIIDPAV-------LSALYNDLNTVSAIQALHKLARESTKN-----------HDLLP 383 G ++ A +SA+ ND NT AI +LH+ + + K + Sbjct: 342 EGAGELNDATSNLSANFISAMENDFNTPKAIASLHEFSTRTNKAVNKGLAGLEELENAFE 401 Query: 384 IFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 F + ++LGI V + + +S + +LV+ER + K F AD IR++L +G++L Sbjct: 402 TFLSLCNVLGIFVDYQRV-PVLSSELAELVKEREEARREKNFEKADRIREKLRERGYVLI 460 Query: 444 DYKNPDNGQRMTRWK 458 D P R TRWK Sbjct: 461 D--TP----RGTRWK 469 >gi|133909679|emb|CAL99791.1| Cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 452 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 236/455 (51%), Gaps = 56/455 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCG TV HIG+ R + +DVL R L + V VRN+TDIDDKI+ +A Sbjct: 14 IYVCGATVQGVPHIGHVRGGLNYDVLRRWL--VHNGYDVRLVRNVTDIDDKILTKAADA- 70 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 P + + + + F RL CL P+ PRAT HI QMI L+Q +I GHAY Sbjct: 71 -GRPWWE----WATAHERAFESAFDRLGCLPPSALPRATGHITQMIELMQRLIDKGHAYA 125 Query: 148 ANNEIIFDTSSIP-NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A ++ F +S +YG S +++DE + G K++P DF LWK + P EP W + Sbjct: 126 AGGDVYFSVASYAEHYGRLSGQRLDEVQQGESTASG--KRDPRDFTLWKAAKPGEPSWPT 183 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWH+ECSAMS++YLG FDIHGGGLDL+FPHHENE+AQS A + A W+ Sbjct: 184 PWGDGRPGWHLECSAMSTYYLGSEFDIHGGGLDLVFPHHENELAQSTAAG--DGFARYWM 241 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 HN ++ + G KMSKS GN + I +L+ AP IR ++ HYR I+++ Sbjct: 242 HNAWVTMSGEKMSKSLGNTVAIPAILQRAA-------APEIRYYLVAPHYRSTIEYSEPA 294 Query: 327 LTEA-------EILLSKWPQTS--TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK 377 L EA + +++ Q + G + +A+ +DL+T AI +H RES Sbjct: 295 LAEAISAYRRIDSFVNRVRQRTGEVGHGTVPAEFAAAMDDDLSTPQAIAVVHNAIRESNA 354 Query: 378 NHD----------------------LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 D L P+ A G + H +S + ++Q+ Sbjct: 355 ALDRGDDRAANEAAASVRTMTDILGLDPLSEQWADTRGADDAAHHA---LSELVGSMLQQ 411 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 R + F++AD +R +L++ G +ED PD Sbjct: 412 RQQARAERDFATADAVRDRLQACGIAVED--TPDG 444 >gi|50955382|ref|YP_062670.1| cysteinyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07] gi|61216187|sp|Q6ADI1|SYC_LEIXX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50951864|gb|AAT89565.1| cysteinyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 477 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 167/479 (34%), Positives = 241/479 (50%), Gaps = 54/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T + +F + + MYVCGPTV HIG+ R +V+D L R L Y Sbjct: 3 LRLFDTKAGALRDFVPLRSGEVGMYVCGPTVQASPHIGHLRSALVYDQLRRWLTYR--GL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT VRN+TDIDDK++ A ++ + + ++F + L APT++PR Sbjct: 61 AVTLVRNVTDIDDKVLANAAAAQAEGG-SEQWWALAYRFEREFTAASVALGVQAPTYEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT IPQM +IQ +I GHAY A + ++ FD S P YG +R+ D + Sbjct: 120 ATASIPQMQEIIQRLIERGHAYAAGDGSGDVYFDVRSWPAYGELTRQSADSMEAAADADP 179 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++ DF LWK EP + SPWG GRPGWHIECSAMS YLG FDIHGGGL Sbjct: 180 RA-KRDGRDFALWKGRKADEPDSAAFPSPWGEGRPGWHIECSAMSRRYLGPRFDIHGGGL 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A + AN W+HNG +N+ G+KMSKS GN ++ ELL + Sbjct: 239 DLRFPHHENELAQSAAAG--DSFANYWVHNGLVNVNGQKMSKSLGNSVSAAELLGAAR-- 294 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------------TSTS 343 P+ +R ++ HYR ID+ L+EAE L + T + Sbjct: 295 ------PLAVRYSLGSAHYRSTIDYHDGSLSEAEAALERIAGFFERVDRRLAGTRFTGSG 348 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------PIFNASAHILG 393 ++ A A+ +DL A+ LH+ R D +F A +LG Sbjct: 349 SEVVPIAFAEAMDDDLAVPQALAVLHETVRSGNAALDAEDLEAAAAARGQVF-AMTEVLG 407 Query: 394 I--------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I + + + +E+L+ R +++ F +AD IR++L G +ED Sbjct: 408 INPLSPQWRQTGSSAAEQALGTLVERLLHNRQEARQVRDFVAADRIREELTGAGITIED 466 >gi|290968519|ref|ZP_06560058.1| cysteine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] gi|290781515|gb|EFD94104.1| cysteine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] Length = 481 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 169/503 (33%), Positives = 245/503 (48%), Gaps = 69/503 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + +YNTL RK +F + P ++MYVCG T Y+ +H+GNARP + +DV+ R L + Sbjct: 2 RDLYVYNTLTRKKEKFVPLTPGQVKMYVCGITPYNHSHMGNARPFVTWDVIKRYLEHL-- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+++N TD+DDKII A E I ++ + L Sbjct: 60 GYAVTHIQNFTDVDDKIIHAANGEQVRW------DTIANRYIASYFDVMDALHVRHADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + H+P++I +IQ ++ G AY ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSEHMPEIIQMIQTLLDKGMAYVVEQDVYYSVEKFVDYGKLSGRTLDDMQAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + EP WESPWG+GRPGWHIECSAMS YLGK FD HGGG DLIF Sbjct: 174 TRKHHPMDFALWKGAKEGEPSWESPWGQGRPGWHIECSAMSCKYLGKTFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++L + Sbjct: 234 PHHENEIAQSEACTGVSPMVRYWLHNGFITINSEKMSKSLHNFFLVKDVLAY-------Y 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAE-------------ILLSKWPQTSTSKGI--- 346 +R ++ HYR P+DFT RL E + L+ P S Sbjct: 287 DPDAVRFFLISNHYRSPLDFTDARLEEMTRSLERLRTSIMNVLELATMPAGGKSAEAAAL 346 Query: 347 ------IDPAVLSALYNDLNTVSAIQALH------KLARESTKNH----------DLLPI 384 + +A+ +D NT A AL + RE+ N+ ++ I Sbjct: 347 LTEAQQVAEDFETAMCDDFNTALAAAALFELAKKVNIYREAVVNNGVPVDTSVITEVKRI 406 Query: 385 FNASAHILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLE 436 F ILGI + N S A +E +++ R + K++ AD IR +L+ Sbjct: 407 FKMMTDILGI--LESAWNGQTSSADASEYAALVEAVLEIRKECREKKQYELADAIRDKLQ 464 Query: 437 SKGFILEDYKNPDNGQRMTRWKQ 459 + G +ED +P RWK+ Sbjct: 465 ALGITIED--SPQGA----RWKK 481 >gi|167045369|gb|ABZ10025.1| putative tRNA synthetases class I (C) catalytic domain protein [uncultured marine microorganism HF4000_APKG10F13] Length = 447 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 170/467 (36%), Positives = 239/467 (51%), Gaps = 56/467 (11%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVY+ H+G+AR + FD + R L + V +++N TDIDDKII RA +E Sbjct: 1 MYVCGLTVYNDMHLGHARSYVSFDAIRRWLEH--SGYSVEHIQNHTDIDDKIIARAAEE- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 A + + + + D T L L P PRAT ++ QM+ +I +++ GHAY Sbjct: 58 -----GVAPADLAERYIARTTADLTALGVLPPHQMPRATAYVEQMVAVIADLLAKGHAYV 112 Query: 148 ANN-------EIIFDT-SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 A ++ FD S+ +G+ + + ++E + G RV K NPADF LWK + Sbjct: 113 AEPAEGALAPDVYFDVPSAREQFGTLTGQSLEELEAGARVAVDPRKHNPADFALWKGARE 172 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+SPWG GRPGWHIECSAMS LG FDIHGGG DL FPHHE+EI Q+ C Sbjct: 173 GEPSWDSPWGTGRPGWHIECSAMSLTLLGPQFDIHGGGSDLKFPHHESEILQTECHTGKH 232 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 W+H GFL ++ KMSKS NF + ++L+ A V+R +L HYR P Sbjct: 233 PMVKYWLHTGFLTVDEEKMSKSLDNFFLVRDVLQYAS-------AEVVRFYLLNAHYRSP 285 Query: 320 IDFTVQRLTEAEILLSKWPQT-----STSKGIIDPAVL------------SALYNDLNTV 362 IDF+ L EA + T + S G P L +A+ +D NT Sbjct: 286 IDFSDAALDEAASAHDRLAATLHRYRTASGGDRQPEALHDAVTTARADFTTAMDDDFNTR 345 Query: 363 SAIQALHKLARES------TKNHDLLPIFNASAHILGIEVCKEHLNKNIS----IAIEKL 412 A+ AL LARE+ T + +L A+ LG EV + + IE L Sbjct: 346 EALAALFGLAREANRYEPGTLDSELRDAVVAAFEELGGEVLGLFAPREATGPGDAEIEAL 405 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +R K+++ AD IR +L ++G ++D PD RW++ Sbjct: 406 LAQREAARAAKEWAEADRIRDELTAQGIEVQD--TPDG----VRWRR 446 >gi|223939279|ref|ZP_03631160.1| cysteinyl-tRNA synthetase [bacterium Ellin514] gi|223892111|gb|EEF58591.1| cysteinyl-tRNA synthetase [bacterium Ellin514] Length = 471 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 176/478 (36%), Positives = 249/478 (52%), Gaps = 57/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIR--MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++NTL R + EF +DP+ R +Y CGPTV+D AHIGN R + D+L R L + Sbjct: 3 LKLFNTLSRSVEEFVPLDPAGKRVGLYCCGPTVHDSAHIGNFRTFVFADLLRRYLEFR-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V NITD++DKII R R N + TSK F D L CL P++ Sbjct: 61 GYAVQHVMNITDVEDKIIARVRT------ANTTLKEYTSKYEAAFFADLKSLGCLPPSNT 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN----YGSFSRRKIDEQKMGT 177 PRAT I ++I LI+ +I G AY+A + + F YG + +E ++G Sbjct: 115 PRATEFIGEIISLIEKLIERGIAYKAPDGSVYFSIDKYRGCGCTYGQLLKLNFEEMRVGE 174 Query: 178 RV-PEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 RV ++Y K++ ADF LWK P E G W SPWG GRPGWHIECSAMS LG FD+ Sbjct: 175 RVKSDEYAKESVADFALWKARVP-EDGTVFWPSPWGEGRPGWHIECSAMSMKLLGPSFDL 233 Query: 234 HGGGLDLIFPHHENEIAQSCCAD---RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 H GG DLIFPHHE+EIAQS A ++ W+H L +EG+KMSK GNF + + Sbjct: 234 HLGGEDLIFPHHEDEIAQSEGAGLQPSGQRFVKHWMHGAHLLVEGKKMSKRLGNFFVLGD 293 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------W 337 L K F GR IR +L +HYRE +FT+ L A L++ Sbjct: 294 LT-AKGFTGRE-----IRYLLLTSHYRETFNFTLDGLQGARTALARIDECLIKLKETAGS 347 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN---HDLLP--------IFN 386 Q S + +++ A AL DLN A A+ + ++ ++ + L P + Sbjct: 348 TQASADEKMVN-AFTQALDKDLNIAGAWGAIFEWVSDTNRHLAENSLTPQQAAAALAAWQ 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ ++ + I L++ R K K F +D IR +L++KG+++ED Sbjct: 407 KIDAVLGVGA---NVEAEVPAEIAALLEARQAARKAKDFKRSDAIRDELKAKGWVIED 461 >gi|237726044|ref|ZP_04556525.1| cysteinyl-tRNA synthetase [Bacteroides sp. D4] gi|229435852|gb|EEO45929.1| cysteinyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4] Length = 493 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 175/494 (35%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYMNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I ++E E + K +++ IR +L HYR +DF+ ++RLTEA L Sbjct: 292 INLSEFFEGSHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGL 351 Query: 335 SKWPQTSTSKGI-----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 + T+ + G+ + +A+ +DLN+ I L AR ++T + + Sbjct: 352 ERITPTAQTTGVEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATLSAED 411 Query: 382 LPIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + H+ E+ KE N ++ L+++R+ K ++++D IR Sbjct: 412 LEELKSVFHLFMYEILGLKEETANNEAREEAYGKVVDMLLEQRMKAKANKDWATSDKIRD 471 Query: 434 QLESKGFILEDYKN 447 +L + GF ++D K+ Sbjct: 472 ELAALGFEVKDTKD 485 >gi|311107717|ref|YP_003980570.1| cysteinyl-tRNA synthetase 2 [Achromobacter xylosoxidans A8] gi|310762406|gb|ADP17855.1| cysteinyl-tRNA synthetase 2 [Achromobacter xylosoxidans A8] Length = 484 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 179/496 (36%), Positives = 253/496 (51%), Gaps = 55/496 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ +RMYVCG TVYDF H+G+AR ++ FDV+ R LR Sbjct: 2 LQIYNTLSRTKEPFKPAQAGQVRMYVCGMTVYDFCHLGHARMLVSFDVVQRWLRA--SGL 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T D L P +PR Sbjct: 60 AVDYVRNITDIDDKIIRRA------VETGRRIGEVTEFYIDAMHADERALGVETPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ M+ +I + +G AY+A++ ++ F YG S + +D+ + G RV Sbjct: 114 ATEYVGDMLDIIGKLEQNGLAYQADDGDVNFAVRGFAGYGKLSGKTLDDLRAGERVAVGS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP WESP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 AKRDPLDFVLWKSAKAEEPADTKWESPYGLGRPGWHIECSAMSKSLLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG- 299 FPHHENEIAQ+ A ANIW+H G L ++ KMSKS GNF TI + + ++ Sbjct: 234 KFPHHENEIAQTEGA-FGGTLANIWMHCGPLMVDSDKMSKSLGNFRTIRQTIAQEEPAAD 292 Query: 300 ----RSWP--APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGII- 347 R P A ++R ++ HYR P ++T L +A+ L + Q + ++GI Sbjct: 293 QAVYRVNPREAEMVRFFIVRNHYRSPQNYTPDNLIDAQNALDRLYQALQNVPADAQGIDW 352 Query: 348 -DP---AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGI------- 394 +P A +A+ +D N+ AI AL +LA E+ + A A +LG+ Sbjct: 353 NEPQAQAFKAAMDDDFNSSGAIAALFELASEANRGKSARSAGQLKALASLLGLLQQDPAA 412 Query: 395 ---------EVCKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 E + + AI+ L+ R + F+ AD IR +L G L+ Sbjct: 413 YFQSPTRYSAAAIEQGERRALDAEAIQSLIDARAAAKAARNFAEADRIRAELREAGIELD 472 Query: 444 DYKNPDNGQRMTRWKQ 459 D +T+W++ Sbjct: 473 DKPGG-----LTQWRR 483 >gi|227541001|ref|ZP_03971050.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183261|gb|EEI64233.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] Length = 451 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 166/471 (35%), Positives = 248/471 (52%), Gaps = 43/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +IY++ R + +F + P + +Y+CG TV HIG+ R + FD+L L + Sbjct: 3 FRIYDSKTRTLQDFVPVRPGHASVYLCGATVQSIPHIGHVRSGVAFDILRNWLEAKGLDT 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +VRN+T+IDDKI+ +A + P + + + + F + L P+ +PR Sbjct: 63 A--FVRNVTNIDDKILTKAAEN--GRPWWE----WAATHERAFNEAYRILGVTPPSIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I +Q II +GH Y A+ + ++I YG S ++IDE G Sbjct: 115 ATGHITEIIEYMQRIIDNGHGYAADGNVYATPATIEGYGELSGQRIDELDQGESA--GTG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W +PWG GRPGWHIEC+AMS+ YLG FDIH GGLDL FPH Sbjct: 173 KRDPRDFTLWKAAKPGEPSWPTPWGPGRPGWHIECTAMSTKYLGSEFDIHCGGLDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A +K A W+HNG++ + G KMSKS GN +++ ++E + Sbjct: 233 HENEIAQATAAG--DKFARYWMHNGWVTMSGEKMSKSLGNVLSVPNVVELVR-------- 282 Query: 305 PV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-----SALYND 358 PV +R + HYR ++++ L EA + + S+G + P L +AL +D Sbjct: 283 PVELRYYLGSAHYRSMLEYSEGALHEAAVGYRRIEDFVNSQGPVTPGTLPEQFVNALDDD 342 Query: 359 LNTVSAIQALHKLAREST----KNHDLLPIFNASAHILGIEVCKE---HLNKNISIAIEK 411 L +A+ +H RE K +L A ILG++ E N + S A+ K Sbjct: 343 LGVPAALAVVHTTVREGNAHPEKAAELAGQVRAMTAILGVDPQSETWASANSDSSDALAK 402 Query: 412 LV----QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 LV Q+R + K +++AD +R L + G L+D G T WK Sbjct: 403 LVEVHIQQRQKAREEKDWATADAVRDTLAAAGIELKD------GADGTTWK 447 >gi|86606543|ref|YP_475306.1| cysteinyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] gi|109894952|sp|Q2JTF4|SYC_SYNJA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86555085|gb|ABD00043.1| cysteinyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] Length = 506 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 186/522 (35%), Positives = 257/522 (49%), Gaps = 94/522 (18%) Query: 7 IYNTLERKITEFQAIDPSN--------------IRMYVCGPTVYDFAHIGNARPMIVFDV 52 +YNTL R+ FQ S +RMYVCG TVYD H+G+AR +V+D+ Sbjct: 5 VYNTLTRRKEVFQPFGGSESISADEAAGGEKPLVRMYVCGVTVYDLCHLGHARTYVVWDM 64 Query: 53 LYRLL--RYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + R L R Y V YV+N TD+DDKI++RA + +++ + + ++ +D Sbjct: 65 VRRYLECRGYR----VKYVQNFTDVDDKILKRALER------GESMQAVAERFIAEYFQD 114 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-----------EIIFDTSSI 159 RL PRAT + M LIQ++ L G AY + ++ + Sbjct: 115 MDRLNIKRADLYPRATRSLRAMFELIQSLELKGFAYRVRDPLAPQGETPAYDVYYAVRKF 174 Query: 160 PNYGSFSRRKIDEQKMGT--RVPEK-YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 P+YG S RK++E + G RV E+ K++P DF LWK + P EPG+ESPWG GRPGWH Sbjct: 175 PDYGQLSGRKLEELEAGASGRVGEEGAGKRDPFDFALWKAAPPSEPGFESPWGWGRPGWH 234 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECSAM LG DIH GG DLIFPHHENE+AQS + A W+HNGF+N+ G+ Sbjct: 235 IECSAMVRETLGDHIDIHAGGADLIFPHHENELAQSEPITG-KPLAKYWLHNGFVNVNGQ 293 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EI 332 KMSKS GNF T+ + L + +RL +L THYR PID T + A E Sbjct: 294 KMSKSLGNFTTLRQALAL-------YHPMALRLFLLQTHYRSPIDLTEAAMEAASHGWET 346 Query: 333 L------LSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP--- 383 L ++ Q + A +A+ +D T A+ +LA+E + H+LL Sbjct: 347 LQKGIHCAQQFGQGGSPDSEAMRAFQTAMDDDFGTPGALALAFELAKELIREHNLLTHQG 406 Query: 384 --------IFNASAHILGI----EVC-------KEHLNKNISIA---------IEKLVQE 415 + A +L I C E N +A IE+LV + Sbjct: 407 HTHLQPHLLRQKGAALLEILATLGFCWPQPAQGSEKAAANGELAKLPPLEDARIEELVAQ 466 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 R K K F+ AD IR+QL++ G L D K+ TRW Sbjct: 467 RTAARKAKNFAEADRIREQLKALGITLIDQKDG-----TTRW 503 >gi|315657556|ref|ZP_07910438.1| cysteinyl-tRNA synthetase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492028|gb|EFU81637.1| cysteinyl-tRNA synthetase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 506 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 166/505 (32%), Positives = 256/505 (50%), Gaps = 91/505 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+++ ++ +F + P + +Y+CGPTV H+G+ R + FDVL R LR Sbjct: 1 MKIFDSATHEVRDFVPVTPGKVGLYLCGPTVQGAPHLGHLRAALNFDVLVRWLRRR--GY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ A+ +P + + + ++F L + PT P Sbjct: 59 AVTYVRNVTDIDDKIL--AKSAAAGVPWWE----LAAHFEREFDFAYRALNTVPPTVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-------DEQKMG 176 AT HIPQ I LI+ ++ GHAY + N + F +S+P+YG+ + + + DE ++ Sbjct: 113 ATGHIPQQIALIERLLERGHAYSDTNGNVYFSVTSLPDYGALTNQPVSELASTEDESQID 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 T + K++P DF LWK + EP W++PWGRGRPGWH+ECSAMS YLG FDI Sbjct: 173 TAT--EAGKRDPRDFALWKAAKDDEPSDAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDI 230 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHENE+AQS A A W+HN +L L+G KMSKS GN + + LLE Sbjct: 231 HGGGLDLRFPHHENEMAQSHGAGW--GFARYWMHNAWLTLKGEKMSKSVGNVVGVRRLLE 288 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------- 337 W V+R++++ THYR ++++ L +A +L K+ Sbjct: 289 -------DWDPAVVRMSVVTTHYRTNLEYSEDSLKQAALLWDKFTSFLQQVPRSVPAETA 341 Query: 338 -PQTSTSKGIIDPAV---------------LSALYNDLNTVSAIQALHKLAR-------- 373 P+ G +DP + ++AL +DLN A+ ALH+ + Sbjct: 342 APEVRNVYGDVDPDLARQRELAAVELPDDFVAALDDDLNVPGALPALHRTLKTGKAALNS 401 Query: 374 --------ESTKNHDLLPIFNASAH----ILGIEVCK---------EHLNKNISIAIEKL 412 E+ + +L +F H + + + + N +++ + L Sbjct: 402 GDTTGAQQEALQLRAMLDVFGLDPHDPAWVASVSATETPGTEPNPTDTPNDSLTALVTAL 461 Query: 413 VQERLILLKMKKFSSADYIRKQLES 437 +Q+R + + AD IR L++ Sbjct: 462 LQQRGEAKAQRDWGRADAIRDLLQT 486 >gi|168998632|ref|YP_001687900.1| hypothetical protein pK2044_00350 [Klebsiella pneumoniae NTUH-K2044] Length = 328 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 194/310 (62%), Gaps = 17/310 (5%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG TVYD H+G+AR + FD++ R LR+ + VT+VRNITDIDDKII+RAR Sbjct: 1 MYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYD--VTFVRNITDIDDKIIQRARD-- 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + +T + + D +L L P +PR T HIPQ+I +I+ ++ AY Sbjct: 57 ----TGEDWRSLTERMVHEMHIDFAKLGILPPDIEPRPTEHIPQIISMIERLLHRQFAYI 112 Query: 148 A-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A N +++F T+S +YG S + I + GTR+ +K++P DF+LWKR+ P EP W S Sbjct: 113 AENGDVMFSTASAKDYGKLSGQDITMLRAGTRIEVNEYKRDPLDFVLWKRAKPGEPVWPS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAM+ HYLG FDIHGGG DLIFPHHENEIAQS A+ N W+ Sbjct: 173 PWGEGRPGWHIECSAMNCHYLGTHFDIHGGGSDLIFPHHENEIAQSTSAND-GPYVNYWL 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H G + + KMSKS NF T+ ++L +F +S +R +L HYR+P++++ + Sbjct: 232 HTGMVTVNKEKMSKSLNNFFTLRDILH--RFDAQS-----VRFFLLGAHYRKPLNYSEEN 284 Query: 327 LTEAEILLSK 336 + A L++ Sbjct: 285 IHIARASLTR 294 >gi|116617314|ref|YP_817685.1| cysteinyl-tRNA synthetase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272485|sp|Q03ZR0|SYC_LEUMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116096161|gb|ABJ61312.1| cysteinyl-tRNA synthetase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 468 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 173/477 (36%), Positives = 245/477 (51%), Gaps = 56/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I I MYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IYVYNTLSREKEVFKPITAGKINMYVCGPTVYNYIHIGNARSAIAFDTVRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII RA++E S + +K F +DT L T + R Sbjct: 61 -VNYVSNFTDVDDKIINRAQEEGISELE------VANKYADAFDEDTLPLNIKPATVRSR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT IP++I ++++I G+AYE+ ++ F YG + + + E + Sbjct: 114 ATEVIPEIIEFVKDLIDKGYAYESEGDVYFRAKKFKGYGILAHQDLAEMEANAAGRLNDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEP--GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K++P DF +WK + P E W SPWG GRPGWHIECS M+ YL DIHGGG+ Sbjct: 174 ETIRKEDPIDFAVWK-NEPREGVISWSSPWGNGRPGWHIECSVMAQKYLSNTIDIHGGGI 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHH NEIAQS A +K N W+HNGF+N+ KMSKS GNF T++++L T Sbjct: 233 DLAFPHHTNEIAQS-EARTGQKFVNYWMHNGFVNVNNEKMSKSLGNFTTLHDMLAT---- 287 Query: 299 GRSWPAP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGII 347 + P VIR + T YR PI++ L +A + L + +TS G Sbjct: 288 ---YDDPMVIRYLLTTTQYRRPINYEASTLEQARLELERIRTAYRNLMFRAETSEPGGDE 344 Query: 348 DPAVL---------SALYNDLNTVSAIQALHKLA--------RESTKNHDLLPIFNASAH 390 D L A+ +D NT +A+ A+ +L R + K + + A Sbjct: 345 DVETLIEVQKKAFDQAMDDDFNTPNALAAIFELVSIGNTYTERNTVKVDTVQHLLGTIAD 404 Query: 391 IL---GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L GIE N+ ++ +L+ +R++ + F +D +R QL+ G +ED Sbjct: 405 LLSVFGIEGLDG--NEELTTKQRELLDKRVLARESHDFERSDLLRNQLKEVGIFVED 459 >gi|148242769|ref|YP_001227926.1| cysteinyl-tRNA synthetase [Synechococcus sp. RCC307] gi|147851079|emb|CAK28573.1| Cysteinyl-tRNA synthetase [Synechococcus sp. RCC307] Length = 511 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 248/489 (50%), Gaps = 70/489 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 ++ N+L + F+ ++ +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 33 LRFTNSLTSRTEAFEPLEAGKATIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWRGYD- 91 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+N TDIDDKI++RA +E S+ ++ +N + F D RL L Sbjct: 92 ---VTYVQNYTDIDDKILKRAAEEGSSM------QAVSERNIEAFEIDMGRLNILPADRM 142 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TR 178 PRAT I + LI+ + G AY A+ ++ F + +YG S R +EQ+ G T Sbjct: 143 PRATRCIDGIQQLIRELEAKGAAYSADGDVYFAVAKANDYGKLSGRDPNEQQQGASGRTA 202 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + EP W+SPWG GRPGWHIECSAM LG DIH GG Sbjct: 203 EGEESRKRHPFDFALWKGAKEGEPSWDSPWGPGRPGWHIECSAMVRQELGLTIDIHLGGG 262 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A+ A +W+HNG +N+ G KMSKS GNF TI LL+ Sbjct: 263 DLVFPHHENEIAQSETANGT-TLAKLWMHNGMVNVGGTKMSKSLGNFTTIRALLD----- 316 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA---------EILLSK-------WPQTS 341 S +P+ +RL +L HYR+P+DFT + L A +LL + W S Sbjct: 317 --SGVSPMTLRLFVLQAHYRKPLDFTAEALDAAANGWKGLNSALLLGERHGEALGW---S 371 Query: 342 TSKGIIDPAV-------LSALYNDLNTVSAIQALHKLARE--------------STKNHD 380 + G + + + A+ +DLN+ + L +LAR + + Sbjct: 372 SGAGELSSELEEQRQRFIEAMDDDLNSSGGLAVLFELARPLRALANRLERGDAITADDQG 431 Query: 381 LLPIFN-----ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 L + A A L E+ + + I L++ R K + AD IR +L Sbjct: 432 LAGQWQLLQDLAGALGLATEITAPSSDGDDGARISDLIEARKSAKANKDYGEADRIRAEL 491 Query: 436 ESKGFILED 444 +++G L D Sbjct: 492 KAEGIELID 500 >gi|329964460|ref|ZP_08301514.1| cysteine--tRNA ligase [Bacteroides fluxus YIT 12057] gi|328524860|gb|EGF51912.1| cysteine--tRNA ligase [Bacteroides fluxus YIT 12057] Length = 491 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 262/503 (52%), Gaps = 60/503 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL+RK F + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEQQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEELE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVKEIMKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQS A + + + W+HN L + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLVFPHHECEIAQS-VASQGDDMVHYWMHNNMLTINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL + T +++ IR L HYR +DF+ + L AE LS+ Sbjct: 292 ITLEELFKGTHPLLEQAYSPMTIRFFTLQAHYRSTVDFSNEALQAAEKGLSRLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLP 383 I PA +S A+ +DLN+ I L LA T + L Sbjct: 352 DKITPAAVSTVDVKTLRAKCYEAMNDDLNSPIVIAHLFDGAKMVNNILAGNDTVTTEDLK 411 Query: 384 IFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H ILG++ E ++ L++ER+ K ++++D IR +L Sbjct: 412 ELKETFHTFCFDILGLKEDNASNEEREAAFGKVVDMLLEERMKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + GF ++D G+ WK Sbjct: 472 TALGFEIKD------GKEGCEWK 488 >gi|193211882|ref|YP_001997835.1| cysteinyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] gi|193085359|gb|ACF10635.1| cysteinyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] Length = 488 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 255/493 (51%), Gaps = 62/493 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IYN+L RK F+ I P +YVCGPTVY AH+G+A+ + FDV+ R LR+ Sbjct: 1 MPSSLHIYNSLTRKKEPFEPIQPGLATIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRHV 60 Query: 61 YGEKC---VTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQF 107 GE+ V YV+NITD+ +DKI ++ARQE P+ + T+ F Sbjct: 61 -GEQQGYKVRYVQNITDVGHLTDDADEGEDKIQKQARQERIE-PME-----VAQFYTRSF 113 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D RL P P AT HIP+ I L++ ++ GHAYE+N + FD +S YG S Sbjct: 114 YEDMDRLGVERPNIAPTATGHIPEQIALVERLVETGHAYESNGNVYFDVNSFAGYGKLSG 173 Query: 168 RKIDEQ-KMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R E + G RV E+ K+NP+DF LWK++ P W+SPWG G PGWH+ECSAM+ Sbjct: 174 RTDQEALQSGGRVAERSDKRNPSDFALWKKAEPSHIMKWQSPWGEGYPGWHLECSAMAMK 233 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG DIHGGG++ FPHH+ EIAQS A + W+HN + ++G KM KS NF Sbjct: 234 YLGDTIDIHGGGMENKFPHHDCEIAQSEAATG-KPFVRYWMHNNMVTVDGVKMGKSLKNF 292 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----- 340 + + EL T + VIR +L +HYR P+DF+ + ++ K +T Sbjct: 293 VNLKELFGT-------FDPLVIRFFILQSHYRSPLDFSEAAIKASQSGFEKLQETYKRLV 345 Query: 341 --STSKGIIDPA-----VLSALYNDLNTVSAIQALHKLARESTKNHD------------L 381 + KG ++ A + AL +D NT AI L + + D L Sbjct: 346 ESAEDKGQLEVATFEQKITDALNDDFNTPVAIAVLFEFIKALNGALDKGGLDAASKAAAL 405 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERL-ILLKMKK-------FSSADYIRK 433 + + +LGI + L S + + + + +LL+++K F+++D IR Sbjct: 406 ALLATYAGEVLGILKSRNELLAGESGESAQTLDDVMQVLLELRKEARANKDFATSDKIRD 465 Query: 434 QLESKGFILEDYK 446 L +G ++D K Sbjct: 466 LLMERGIEVKDTK 478 >gi|298345949|ref|YP_003718636.1| cysteine--tRNA ligase [Mobiluncus curtisii ATCC 43063] gi|298236010|gb|ADI67142.1| cysteine--tRNA ligase [Mobiluncus curtisii ATCC 43063] Length = 506 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/505 (32%), Positives = 256/505 (50%), Gaps = 91/505 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+++ ++ +F + P + +Y+CGPTV H+G+ R + FDVL R LR Sbjct: 1 MKIFDSATHEVRDFVPVTPGKVGLYLCGPTVQGAPHLGHLRAALNFDVLVRWLRRR--GY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ A+ +P + + + ++F L + PT P Sbjct: 59 AVTYVRNVTDIDDKIL--AKSAAAGVPWWE----LAAHFEREFDFAYRALNTVPPTVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-------DEQKMG 176 AT HIPQ I LI+ ++ GHAY + N + F +S+P+YG+ + + + DE ++ Sbjct: 113 ATGHIPQQIALIERLLERGHAYSDTNGNVYFSVTSLPDYGALTNQPVSELASTEDESQID 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 T + K++P DF LWK + EP W++PWGRGRPGWH+ECSAMS YLG FDI Sbjct: 173 TAT--ETGKRDPRDFALWKAAKDDEPSDAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDI 230 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHENE+AQS A A W+HN +L L+G KMSKS GN + + LLE Sbjct: 231 HGGGLDLRFPHHENEMAQSHGAGW--GFARYWMHNAWLTLKGEKMSKSVGNVVGVRRLLE 288 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------- 337 W V+R++++ THYR ++++ L +A +L K+ Sbjct: 289 -------DWDPAVVRMSVVTTHYRTNLEYSEDSLKQAALLWDKFTSFLLQVPRSVPAETA 341 Query: 338 -PQTSTSKGIIDPAV---------------LSALYNDLNTVSAIQALHKLAR-------- 373 P+ G ++P + ++AL +DLN A+ ALH+ + Sbjct: 342 APEVRNVYGDVNPDLARQRELAAVELPDDFVAALDDDLNVPGALPALHRTLKTGKAALNS 401 Query: 374 --------ESTKNHDLLPIFNASAH----ILGIEVCK---------EHLNKNISIAIEKL 412 E+ + +L +F H + + + E N +++ + L Sbjct: 402 GDTTGAQQEALQLRAMLDVFGLDPHDPAWVASVSAAETPGTAPNPTETPNDSLTALVTAL 461 Query: 413 VQERLILLKMKKFSSADYIRKQLES 437 +Q+R + + AD IR L++ Sbjct: 462 LQQRGEAKAQRDWGRADAIRDLLQT 486 >gi|332669126|ref|YP_004452134.1| cysteinyl-tRNA synthetase [Cellulomonas fimi ATCC 484] gi|332338164|gb|AEE44747.1| cysteinyl-tRNA synthetase [Cellulomonas fimi ATCC 484] Length = 478 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/495 (33%), Positives = 252/495 (50%), Gaps = 60/495 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T R + +F + + +Y+CG TV H+G+ R + FDVL R LR G Sbjct: 5 SLRLYDTATRTVRDFVPLTAGEVGIYLCGATVQAPPHVGHVRSSVAFDVLVRWLRRT-GH 63 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VT VRN+TDIDDKI+ +A + N + F L L PT++P Sbjct: 64 R-VTLVRNVTDIDDKILAKA------AAAGEPWWAWAMTNERAFTSAYDALGVLPPTYEP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQ-KMGTRVPE 181 RAT H+P M+ L+ ++ GHAY A ++ FD S P+YG+ + +++D+ P+ Sbjct: 117 RATGHVPAMVELMTRLVERGHAYAAGEGDVYFDVRSFPDYGALTNQRVDDMVPAPDGAPD 176 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 KK+P DF LWK + P EP W++P+GRGRPGWH+ECSAM+ YLG FDIHGGGL Sbjct: 177 GVVKKDPRDFALWKAAKPGEPETAAWDTPYGRGRPGWHLECSAMARRYLGDGFDIHGGGL 236 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQS A A W+HNG++ G KMSKS GN + ++ +L+ + Sbjct: 237 DLRFPHHENEQAQSHAAGY--PFARYWLHNGWVTQGGTKMSKSLGNGLLVDVVLQQVR-- 292 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL---LSKWPQTSTSK----------- 344 A V+R AM YR +++T L EAE L+ + + +T + Sbjct: 293 -----AVVVRYAMTTVQYRSMLEWTDDTLREAEAAWDRLAGFVERATERVGAVDAEEVAA 347 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARE--STKNHDLLPIFNAS-------AHILGIE 395 + A+ +DLN A+ +H+ R+ S D L A+ +LG++ Sbjct: 348 APVPQDFADAMDDDLNVPKAMAVVHEWLRQGNSALADDALDDVRATLVGLRAMLDVLGLD 407 Query: 396 VCK---------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 E K + + V+ R + F++AD IR +L + G ++ED Sbjct: 408 PGSPQWATRGGDERYAKALDALVAGQVEARAAARAARDFATADAIRDRLTAAGVVVED-- 465 Query: 447 NPDNGQRMTRWKQKP 461 +P RW +P Sbjct: 466 SPTG----ARWSLRP 476 >gi|304390348|ref|ZP_07372301.1| cysteine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326104|gb|EFL93349.1| cysteine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 506 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/505 (32%), Positives = 256/505 (50%), Gaps = 91/505 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+++ ++ +F + P + +Y+CGPTV H+G+ R + FDVL R LR Sbjct: 1 MKIFDSATHEVRDFVPVTPGKVGLYLCGPTVQGAPHLGHLRAALNFDVLVRWLRRR--GY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ A+ +P + + + ++F L + PT P Sbjct: 59 AVTYVRNVTDIDDKIL--AKSAAAGVPWWE----LAAHFEREFDFAYRALNTVPPTVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-------DEQKMG 176 AT HIPQ I LI+ ++ GHAY + N + F +S+P+YG+ + + + DE ++ Sbjct: 113 ATGHIPQQIALIERLLERGHAYSDTNGNVYFSVTSLPDYGALTNQPVSELASTEDESQID 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 T + K++P DF LWK + EP W++PWGRGRPGWH+ECSAMS YLG FDI Sbjct: 173 TAT--ETGKRDPRDFALWKAAKDDEPSDATWDAPWGRGRPGWHLECSAMSQAYLGDTFDI 230 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHENE+AQS A A W+HN +L L+G KMSKS GN + + LLE Sbjct: 231 HGGGLDLRFPHHENEMAQSHGAGW--GFARYWMHNAWLTLKGEKMSKSVGNVVGVRRLLE 288 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------- 337 W V+R++++ THYR ++++ L +A +L K+ Sbjct: 289 -------DWDPAVVRMSVVTTHYRTNLEYSEDSLKQAALLWDKFTSFLLQVPRSVPAETA 341 Query: 338 -PQTSTSKGIIDPAV---------------LSALYNDLNTVSAIQALHKLAR-------- 373 P+ G ++P + ++AL +DLN A+ ALH+ + Sbjct: 342 APEVRNVYGDVNPDLARQRELAAVELPDDFVAALDDDLNVPGALPALHRTLKTGKAALNS 401 Query: 374 --------ESTKNHDLLPIFNASAH----ILGIEVCK---------EHLNKNISIAIEKL 412 E+ + +L +F H + + + E N +++ + L Sbjct: 402 GDTTGAQQEALQLRAMLDVFGLDPHDPAWVASVSAAETPGTAPNPTETPNDSLTALVTAL 461 Query: 413 VQERLILLKMKKFSSADYIRKQLES 437 +Q+R + + AD IR L++ Sbjct: 462 LQQRGEAKAQRDWGRADAIRDLLQT 486 >gi|227489407|ref|ZP_03919723.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227090585|gb|EEI25897.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] Length = 451 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/471 (35%), Positives = 247/471 (52%), Gaps = 43/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +IY++ R + +F P + +Y+CG TV HIG+ R + FD+L L + Sbjct: 3 FRIYDSKTRTLQDFVPARPGHASVYLCGATVQSIPHIGHVRSGVAFDILRNWLEAKGLDT 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +VRN+T+IDDKI+ +A + P + + + + F + L P+ +PR Sbjct: 63 A--FVRNVTNIDDKILTKAAEN--GRPWWE----WAATHERAFNEAYRILGVTPPSIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I +Q II +GH Y A+ + ++I YG S ++IDE G Sbjct: 115 ATGHITEIIEYMQRIIDNGHGYAADGNVYATPATIEGYGELSGQRIDELDQGESA--GTG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W +PWG GRPGWHIEC+AMS+ YLG FDIH GGLDL FPH Sbjct: 173 KRDPRDFTLWKAAKPGEPSWPTPWGPGRPGWHIECTAMSTKYLGSEFDIHCGGLDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A +K A W+HNG++ + G KMSKS GN +++ ++E + Sbjct: 233 HENEIAQATAAG--DKFARYWMHNGWVTMSGEKMSKSLGNVLSVPNVVELVR-------- 282 Query: 305 PV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-----SALYND 358 PV +R + HYR ++++ L EA + + S+G + P L +AL +D Sbjct: 283 PVELRYYLGSAHYRSMLEYSEGALHEAAVGYRRIEDFVNSQGPVTPGTLPEQFVNALDDD 342 Query: 359 LNTVSAIQALHKLAREST----KNHDLLPIFNASAHILGIEVCKE---HLNKNISIAIEK 411 L +A+ +H RE K +L A ILG++ E N + S A+ K Sbjct: 343 LGVPAALAVVHTTVREGNAHPEKAAELAGQVRAMTAILGVDPQSETWASANSDSSDALAK 402 Query: 412 LV----QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 LV Q+R + K +++AD +R L + G L+D G T WK Sbjct: 403 LVEVHIQQRQKAREEKDWATADAVRDTLAAAGIELKD------GADGTTWK 447 >gi|313902850|ref|ZP_07836247.1| cysteinyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965] gi|313466970|gb|EFR62487.1| cysteinyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965] Length = 529 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 139/327 (42%), Positives = 192/327 (58%), Gaps = 16/327 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL + F+ ++P +RMY CGPTVYD+ H+GN R + FDV+ L Y G + Sbjct: 3 IQIYNTLTGQKEPFEPLEPGRVRMYNCGPTVYDYFHVGNLRTFLFFDVVRGWLEYR-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDK+I RA + S+ + + + + +D L + PR Sbjct: 62 -VRYIQNFTDIDDKLIRRAAERGISV------KELADEQIRAYFEDADALGIVRADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + I +I LIQ +I G+AY AN ++ FD S +YG S ++ ++ G RV + Sbjct: 115 VSEKIGAIIGLIQRLIDQGYAYVANGDVFFDVSRFRDYGKLSGQRTEQLLAGARVEASEN 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK P EP W+SPWG GRPGWHIECSAM+ LG DIH GG DL+FPH Sbjct: 175 KRNPLDFALWKAQKPGEPAWDSPWGPGRPGWHIECSAMAMDELGTTLDIHSGGSDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+H + + G++M KS GNF + +L R P Sbjct: 235 HENEIAQSEAATG-QPFARYWMHVALVQVGGQRMGKSMGNFWRVRDLR------ARFHPE 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE 331 IRL +L HYR P++F+++ L +AE Sbjct: 288 -AIRLFILSAHYRNPLEFSLEALEQAE 313 >gi|119718240|ref|YP_925205.1| cysteinyl-tRNA synthetase [Nocardioides sp. JS614] gi|166225302|sp|A1SNY3|SYC_NOCSJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119538901|gb|ABL83518.1| cysteinyl-tRNA synthetase [Nocardioides sp. JS614] Length = 471 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 172/486 (35%), Positives = 250/486 (51%), Gaps = 63/486 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++Y+T R++ +F ++ +YVCG TV H+G+ R + FDVL R LR+ + Sbjct: 3 FRLYDTATREVRDFVPLEEGKAGLYVCGLTVQSEPHVGHVRSGVNFDVLQRWLRHLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKI+ ++ ++ A + + +Q + L PT++P Sbjct: 62 -VTFIRNVTDIDDKILVKSAEQ------GLAWYQLAYRMKRQLDRAYDDLNVAPPTYEPA 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT H+P+MI LIQ +I GHAY A + ++ FD S P YG +R+ ID+ + Sbjct: 115 ATGHVPEMIVLIQELIAKGHAYAAEDGSGDVYFDVRSWPQYGELTRQGIDDMEAAEDADP 174 Query: 182 KYHKKNPADFILWK----RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK S P W SPWG GRPGWHIECSAM+ YLG FDIHGGG Sbjct: 175 R-GKRDPRDFALWKGWKKDSEPETAAWPSPWGPGRPGWHIECSAMAGKYLGPAFDIHGGG 233 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DL FPHHENE AQS A R A W+HN ++ G KMSKS GN +TI +L+ K+ Sbjct: 234 VDLRFPHHENEQAQSRAAGR--PFATYWMHNAWITTAGEKMSKSLGNSLTIPAVLQ--KY 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPA 350 G +R ++ HYR ++F+ + L EA E L + G Sbjct: 290 RGIE-----LRYYLVAAHYRSHVEFSFEALDEAATGFRRIENFLDRAADVLGGIGGGIAC 344 Query: 351 V--LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------HILGIEV 396 L+A+ +DL T +A+ A+H++ RE K LL ++ A +LG++ Sbjct: 345 ADFLNAMNDDLGTPAAVAAIHEVVREGNK---LLAAGDSPALRGNAASVVAMLDVLGLDP 401 Query: 397 CK------------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + + L+ +R + F SAD IR +L + G LED Sbjct: 402 ADPAWSSPGGGRTAERLETVVEGLVSDLLTQREKARADRDFVSADAIRDRLHAVGVQLED 461 Query: 445 YKNPDN 450 PD Sbjct: 462 --TPDG 465 >gi|325283376|ref|YP_004255917.1| cysteinyl-tRNA synthetase [Deinococcus proteolyticus MRP] gi|324315185|gb|ADY26300.1| cysteinyl-tRNA synthetase [Deinococcus proteolyticus MRP] Length = 489 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 184/504 (36%), Positives = 258/504 (51%), Gaps = 74/504 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +Y+T++R+ F+ P ++ MY+CGPTVY AH+G+A+ + FDV+ R ++G K Sbjct: 11 IHLYDTMQRQKVRFEPSTPGHVGMYLCGPTVYSDAHLGHAKKEVAFDVIRRTF-LHFGYK 69 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV NITD+ +DK++ RAR E P+ + K F KD L Sbjct: 70 -VRYVANITDVGHLQNDSDDGEDKMLARARLEQLE-PME-----VADKYFWSFFKDMDAL 122 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P+ PRAT HI + I LI+ +I GHAYE+N + FD S P YG S RK+D+Q+ Sbjct: 123 NVLRPSINPRATGHIQEQIKLIEELIEKGHAYESNGSVYFDVRSWPEYGKLSGRKLDDQE 182 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 GTR + K++P DF LWK + P W+SPWG G PGWHIECSAMS YLG+ FDI Sbjct: 183 EGTREAVREEKRDPRDFALWKNAEPEHIMRWDSPWGVGFPGWHIECSAMSLKYLGEGFDI 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHE EIAQ+ A A W+HN L + G KMSKS GNF TI ++L+ Sbjct: 243 HGGGLDLQFPHHEAEIAQAEAAG--HHFARYWMHNNMLTIGGEKMSKSKGNFTTIQDILQ 300 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSKWPQ 339 + V+R ++ +HYR + V L E E L+ P Sbjct: 301 -------RYDPMVVRFLLVSSHYRSVTEMNDEAFASAANGYRRLVDTLAEIERRLNDAP- 352 Query: 340 TSTSKGIIDPAVLS-------ALYNDLNTVSAIQALHKLARE--------STKNHDLLPI 384 + + +D + + A+ +D NT A+ AL+ L E + L Sbjct: 353 -AGADAALDAKIAARVQEFEDAMRDDFNTPKAVAALYGLTTEMNTALNAGAVGRETLEQA 411 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERL--ILLK-------MKKFSSADYIRKQL 435 NA + G + N + + V +RL I+LK K+++ AD +R L Sbjct: 412 RNAYRTLGGDVLGLFAGNGQAATQDDAPVVDRLMEIVLKARQNYRLQKQYAEADELRDTL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + G +ED K+ RWK+ Sbjct: 472 GAVGITVEDTKDG------ARWKR 489 >gi|167752833|ref|ZP_02424960.1| hypothetical protein ALIPUT_01094 [Alistipes putredinis DSM 17216] gi|167659902|gb|EDS04032.1| hypothetical protein ALIPUT_01094 [Alistipes putredinis DSM 17216] Length = 490 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 159/402 (39%), Positives = 230/402 (57%), Gaps = 38/402 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ +YNTL+R+ F+ I+P ++ MYVCGPTVY H+G+ARP + FD+L+R LR Sbjct: 1 MESKLTLYNTLDRRKETFEPINPPHVGMYVCGPTVYGDPHLGHARPAVTFDLLFRYLRSL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRN+TD+ +DKI ++AR E P+ + T+++ + Sbjct: 61 -GYK-VRYVRNVTDVGHLEHDADDGEDKISKKARLEQLE-PME-----VAHYYTERYHRA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I +++ I+ +G AYE+N + FD +YG S Sbjct: 113 MDELNVLSPSIEPCASGHIIEQIAMVKEILDNGFAYESNGSVYFDVEKYNRKYSYGRLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K++ DF LWK+++P W SPW G PGWH+ECSAMS+ Sbjct: 173 RNLDDILTNTRELDGQGDKRHSCDFALWKKASPEHIMRWPSPWSDGFPGWHMECSAMSTK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQS A +A WIHN + + G+KM KS GNF Sbjct: 233 YLGQRFDIHGGGMDLMFPHHECEIAQSTAA-LGHDSAKYWIHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---- 340 IT+ EL K +++ IR +L HYR +DF+ + L AE L + + Sbjct: 292 ITLEELFTGNHKLLTQAYSPMTIRFFVLQAHYRSTLDFSNEALQAAEKGLDRLMKAVEAL 351 Query: 341 ----STSKGIIDPAVL-----SALYNDLNTVSAIQALHKLAR 373 + + +DPA L AL +DLN+ AI AL R Sbjct: 352 DKIKPSEQSTVDPAELETRCREALDDDLNSPMAISALFDWVR 393 >gi|332283464|ref|YP_004415375.1| cysteinyl-tRNA synthetase [Pusillimonas sp. T7-7] gi|330427417|gb|AEC18751.1| cysteinyl-tRNA synthetase [Pusillimonas sp. T7-7] Length = 483 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 255/495 (51%), Gaps = 54/495 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R + ++P +RMYVCG TVYDF H+G+AR ++ FD++ R LR + Sbjct: 2 LHIYNTLSRAKEPLKTVEPGLVRMYVCGMTVYDFCHLGHARMLVSFDIVQRWLRASGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA Q +S +TS D L +P +PR Sbjct: 61 -VKYVRNITDIDDKIIRRAVQN------GQRMSEVTSFFIDAMHADERALGVASPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ +M+ +I+ + +G AY++++ ++ + P YG S + +D+ + G RV Sbjct: 114 ATEHVGEMLGIIKCLEQNGLAYQSDDGDVNYAVRDFPGYGKLSGKSLDDLRAGERVAVSS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W S +G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 GKRDPLDFVLWKAAKSDEPDESKWPSNYGLGRPGWHIECSAMSRALLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-------- 292 FPHHENEIAQS A A++W+H G L ++ KMSKS GNF TI + Sbjct: 234 KFPHHENEIAQSEGA-FGGTLASVWMHCGPLMVDSDKMSKSLGNFRTIRATISIDANLPA 292 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIID 348 + + A ++R ++ HYR ++ L +A+ L + QT ID Sbjct: 293 DQASYSANPREAEMLRFFIVRNHYRSQQNYAPDNLFDAQNALDRLYQTLHNVPAEPVQID 352 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP--IFNASAHILGIEVCK-- 398 A +A+ +D NT A+ AL +L+ E+ +N + A ILG+ Sbjct: 353 WNHPAAQAFRAAMDDDFNTSGAVAALFELSSEANRNGSGRSSGLMRALGGILGLLQSDPA 412 Query: 399 EHLNKNI--------------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L S IE L+++R + + + F+ AD IRK L+ G LED Sbjct: 413 TYLQSPTRYQPGSGSAQAVFASEQIEALIKDRALAKQERNFAQADQIRKTLQEGGIELED 472 Query: 445 YKNPDNGQRMTRWKQ 459 +T+W++ Sbjct: 473 KAGG-----VTQWRR 482 >gi|297627017|ref|YP_003688780.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922782|emb|CBL57360.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 467 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 175/485 (36%), Positives = 246/485 (50%), Gaps = 59/485 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +Y+ ++ F + P + +Y CG TV H+G+ R +VFDVL R + V Sbjct: 5 LYDESSGQVVPFVPLIPGKVSIYHCGLTVQSSPHLGHMRKEVVFDVLRRW--FDASGYRV 62 Query: 67 TYVRNITDIDDKIIERARQEHPS-IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V NITDI++KI ++A + + A+ + + + L C+ P+++PRA Sbjct: 63 RVVANITDINEKIWQKAAEAGLEWFELAYAVEL-------ELHRAYASLGCIPPSYEPRA 115 Query: 126 TNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 T HI +MI LI +I GHAY A++ ++ FD S P YG S +KID+ T + Sbjct: 116 TGHITEMIELINRLIERGHAYAADDGSGDVYFDVRSWPEYGELSHQKIDDMVAATDADPR 175 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K +P DF LWK S P EP W SPWGRGRPGWH+ECSAMS YLG+ FDIHGGG+D Sbjct: 176 -GKHDPRDFALWKGSKPDEPATASWPSPWGRGRPGWHLECSAMSLKYLGEAFDIHGGGID 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENE AQS A A+ W+HN F+ + G KMSKS GN T+ E+ TK + Sbjct: 235 LRFPHHENEQAQSRAAGY--DFAHYWMHNAFVTMAGEKMSKSLGNGATVAEV--TKHY-- 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDP 349 PA +RL + HYR I+++ LTEA L + Q + + Sbjct: 289 ---PARAVRLYLAQPHYRSTIEYSDTSLTEATAQLDRIDSFLNRAHVSGQAAFDTADLPD 345 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEH 400 A + A+ NDL T +A L+ +E + D + A H+LG++ + Sbjct: 346 AFVEAMDNDLGTPAAFAVLYDTIKEGNRAFDANDQGAATNCVAQVRAMLHVLGLDPHEPQ 405 Query: 401 LNKN-------ISIAIEKLV-QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 ++ + KLV ER + K F++AD+IR L G LED G Sbjct: 406 WADQAGGTDLAVTDGLVKLVLDERQAARERKDFAAADHIRDSLTELGIRLED------GA 459 Query: 453 RMTRW 457 TRW Sbjct: 460 NGTRW 464 >gi|46198845|ref|YP_004512.1| cysteinyl-tRNA synthetase [Thermus thermophilus HB27] gi|61216249|sp|Q72KB0|SYC_THET2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|46196468|gb|AAS80885.1| cysteinyl-tRNA synthetase [Thermus thermophilus HB27] Length = 480 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 255/492 (51%), Gaps = 75/492 (15%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+TL R+ F+ P ++ +YVCGPTVY H+G+AR +V+D+L R + G K V Sbjct: 5 IYDTLARRKVPFEPAVPGHVGIYVCGPTVYSDPHLGHARGPVVYDILRRYF-LHKGYK-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V NITD+ +DKI+ RA+ E P+ + K + L Sbjct: 63 RFVSNITDVGHLTDDADEGEDKIVRRAKLERLE-PME-----VADKYMWSYFDAMQALNV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L P+ PRA+ HIP+M+ L + ++ GHAYE + F S P YG S ++++E + G Sbjct: 117 LRPSIAPRASGHIPEMLELTERLLARGHAYERKGSVYFRVRSFPEYGKLSGKRLEELRAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 RV + K++P DF LWK + EPG W+SPWG G PGWHIEC+AMS YLG+ FD Sbjct: 177 ARVEVREEKEDPLDFALWKAA---EPGHIMRWKSPWGEGYPGWHIECTAMSLKYLGEGFD 233 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 +H GG+DL FPHHE EIAQ+ A + A W+H+ + LEG KM+KS GN + +++LL Sbjct: 234 LHAGGIDLQFPHHECEIAQAEAAGF--RFARHWMHHNHVLLEGEKMAKSTGNLVLLHDLL 291 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKW----------- 337 E + +R +L THYR P+DFT + L A+ LL + Sbjct: 292 EAHE-------PMALRFYLLQTHYRSPMDFTWEGLESAKRGYGRLLHAYREVRGRKKTAP 344 Query: 338 ----PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 P+ + ++ A + A+ +DL+T A+ AL E H LLP A + + Sbjct: 345 PGTTPELERALDALEKAFMEAIEDDLSTPEALAALFAFLPEL---HKLLPEAKAES-LAR 400 Query: 394 IEVCKEHLNKNI-SIAIEKLVQERLI-----------------LLKMKKFSSADYIRKQL 435 E L + I + E++++ER+ + K + +D IR++L Sbjct: 401 AEAVFHTLGEGILGLFPERVLEERVSGPLLEGLIALLLELREEARRAKDYEKSDLIRERL 460 Query: 436 ESKGFILEDYKN 447 + G I+ED K Sbjct: 461 RALGVIVEDTKE 472 >gi|212692228|ref|ZP_03300356.1| hypothetical protein BACDOR_01724 [Bacteroides dorei DSM 17855] gi|265752921|ref|ZP_06088490.1| cysteinyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA] gi|212665105|gb|EEB25677.1| hypothetical protein BACDOR_01724 [Bacteroides dorei DSM 17855] gi|263236107|gb|EEZ21602.1| cysteinyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA] Length = 493 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 175/494 (35%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I ++E T K +++ IR +L HYR +DF+ ++RLTEA L Sbjct: 292 INLDEFFHGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGL 351 Query: 335 SKWPQTSTSKGI-----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 + ++ + GI + +A+ +DLN+ I L AR ++T + + Sbjct: 352 ERITPSAQTTGIEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATLSAED 411 Query: 382 LPIFNASAHILGIEVC--KEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + H+ E+ KE N ++ L+++R+ K ++++D IR Sbjct: 412 LEELKSVFHLFMYEILGIKEEAANNEAREEAYGKVVDMLLEQRMKAKANKDWATSDKIRD 471 Query: 434 QLESKGFILEDYKN 447 +L + GF ++D K+ Sbjct: 472 ELAALGFEVKDTKD 485 >gi|297572189|ref|YP_003697963.1| cysteinyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296932536|gb|ADH93344.1| cysteinyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 475 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 166/480 (34%), Positives = 249/480 (51%), Gaps = 59/480 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY++ R + EF ++ P + +Y+CG TV HIG+ R + FDVL R LR E Sbjct: 3 LHIYDSATRAMREFTSLVPGKVGIYLCGATVQGSPHIGHMRSAVAFDVLVRWLRRSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 T VRN+TDIDDKI+ ++ + I +F + L L PT++PR Sbjct: 62 -TTMVRNVTDIDDKILAKSADAGREFWAHAYI------YENEFTQAYDALGVLRPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P+MI I +I GHAY ++ + FD +S+ +YGS +R+ +D+ V Sbjct: 115 ATGHVPEMIAFIARLIERGHAYPGDSGNVYFDVASLADYGSLTRQTLDDFNDDAAVEPD- 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF LWK + P EP W++PWGRGRPGWH+ECSAM+ YLG+ FDIHGGG+DL Sbjct: 174 -KRNPRDFALWKAAKPGEPASASWDTPWGRGRPGWHLECSAMAGKYLGESFDIHGGGIDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE AQS A A W+HN ++ ++G KMSKS GN + ++ +LE Sbjct: 233 RFPHHENEQAQSHGAGY--GFAQYWMHNAWVTIDGEKMSKSLGNSLIVSRILE------- 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-------------TSTSKGI- 346 +PA V+RLA+ HYR + ++ + L EA + + GI Sbjct: 284 EYPAVVVRLALGAVHYRSTVAYSDRTLAEAGAVWDRLAGFVRRAIDAVGEVPAEEVAGIG 343 Query: 347 ---IDPAVLSALYNDLNTVSAIQALHK---------LARESTKNHDLLPIFNASAHILGI 394 + + A+ +D+N +A+ +H+ A E + + A +LG+ Sbjct: 344 LAELPDEFVDAMDDDVNVSAALAVIHEHVTAGNNAIAAEEHVEIRQEQALVRAMLDVLGL 403 Query: 395 EVCKEHLNKNISI------AIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFILED 444 + C ++ S A++ LV ER K ++ AD +R L++ G +ED Sbjct: 404 DPCASPWHEESSAGSDYHEALDSLVHAILNERAAARAAKDWARADALRDSLQTAGIQVED 463 >gi|217076406|ref|YP_002334122.1| cysteinyl-tRNA synthetase [Thermosipho africanus TCF52B] gi|226735065|sp|B7IFB7|SYC_THEAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|217036259|gb|ACJ74781.1| cysteinyl-tRNA synthetase [Thermosipho africanus TCF52B] Length = 469 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 166/463 (35%), Positives = 238/463 (51%), Gaps = 51/463 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I I NT K E + I+P ++MYVCGPTVY++ HIGNARP +VFD R L Y G K Sbjct: 3 IYITNTETGKKEELKTIEPGVVKMYVCGPTVYNYIHIGNARPAVVFDAFRRFLEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + V+N TDIDDKII A + + D + ++ KD L A PR Sbjct: 62 VIM-VQNFTDIDDKIINEANE--WGVDFKDVADTFIA----EYWKDAQSLGIRAANFHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+++ +++ ++ +I G+AY N ++ F YG S +KI++ G RV Sbjct: 115 TTDYVNEIVDAVEKLISKGYAYTVENGDVYFSVKKFERYGKLSGKKIEDLISGARVEVNT 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF LWK P EP W+SPWG GRPGWHIECS MS LG FDIH GG DLIFP Sbjct: 175 LKKDPLDFALWKAVKPGEPSWDSPWGCGRPGWHIECSVMSQKLLGDTFDIHAGGEDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE+E +QS + A W+HNG + G KMSKS GN + E + K++G Sbjct: 235 HHEDEKSQSEALTG-KPFARYWMHNGMIITRGDKMSKSIGNVFLVREAV--KRYG----- 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTE-----AEILLS-----------KWPQTSTSKGII 347 ++L +L HYR PI+F+ + + E ++L + K P+ I Sbjct: 287 KDAVKLFLLSKHYRTPIEFSDEIMMENKKAALKVLKTLNRFEEKYPYPKVPKRDEYMNDI 346 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------------LLPIFNASAHIL-- 392 + + AL +D NT AI + L++E K D + +F + + Sbjct: 347 EQKFVEALEDDFNTPKAIALIFDLSKELNKAMDEGKDDEALKRYHLITRVFGSILGLFEG 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 G+++ + +N + IE++++ R K K F +AD IR L Sbjct: 407 GVKISE---GENTNKVIEEILKVRQEFRKAKNFEAADKIRDAL 446 >gi|189461692|ref|ZP_03010477.1| hypothetical protein BACCOP_02356 [Bacteroides coprocola DSM 17136] gi|189431579|gb|EDV00564.1| hypothetical protein BACCOP_02356 [Bacteroides coprocola DSM 17136] Length = 492 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 180/495 (36%), Positives = 262/495 (52%), Gaps = 59/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLTRRKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIQLVEGILKNGYAYESQGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVINTTRELDGQQEKHNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + W+HN + + G+KM KS GNF Sbjct: 233 YLGENFDIHGGGMDLIFPHHECEIAQS-VASQGHDMVRYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------- 337 IT++E + K +++ A IR +L HYR +DF+ + L AE L + Sbjct: 292 ITLDEFFTGSNKLLTQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLERMMEGVKNL 351 Query: 338 ----PQTSTSKGIIDPAVL-----SALYNDLNTVSAIQALHKLAR--------ESTKNHD 380 P +TS I+PA L A+ +DLNT I L R ++T + D Sbjct: 352 ERITPSKTTSG--IEPAGLREKCYEAMNDDLNTPIVISHLFDAIRMINTVIDKKATISAD 409 Query: 381 LLPIFNASAH-----ILGIEVCKEH---LNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 L + H ILG++ E+ + ++ L+++R+ K ++++D IR Sbjct: 410 DLEELKSVFHTFVFDILGLKAEAENNAAREEAFGKVVDMLLEQRMQAKANKDWATSDKIR 469 Query: 433 KQLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 470 DTLAALGFEVKDTKD 484 >gi|55980862|ref|YP_144159.1| cysteinyl-tRNA synthetase [Thermus thermophilus HB8] gi|61216139|sp|Q5SJV9|SYC_THET8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|55772275|dbj|BAD70716.1| cysteinyl-tRNA synthetase [Thermus thermophilus HB8] Length = 480 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 173/492 (35%), Positives = 256/492 (52%), Gaps = 75/492 (15%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+TL R+ F+ P ++ +YVCGPTVY H+G+AR +V+DVL R L + G K V Sbjct: 5 IYDTLARRKVPFEPAVPGHVGIYVCGPTVYADPHLGHARGPVVYDVLRRYL-LHKGYK-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V NITD+ +DKI+ RA+ E P+ + K T + L Sbjct: 63 RFVSNITDVGHLTDDADEGEDKIVRRAKLERLE-PME-----VAEKYTWSYFDAMQALNV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L P+ PRA+ HIP+M+ L + ++ G AYE + F S P YG S ++++E + G Sbjct: 117 LRPSIAPRASGHIPEMLELTERLLARGVAYERKGSVYFRVRSFPEYGKLSGKRLEELRAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 RV + K++P DF LWK + EPG W+SPWG G PGWHIEC+AMS YLG+ FD Sbjct: 177 ARVEVREEKEDPLDFALWKAA---EPGHIMRWKSPWGEGYPGWHIECTAMSLKYLGEGFD 233 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 +H GG+DL FPHHE EIAQ+ A + A W+H+ + LEG KM+KS GN + +++LL Sbjct: 234 LHAGGIDLQFPHHECEIAQAEAAGF--RFARHWMHHNHVLLEGEKMAKSTGNLVLLHDLL 291 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKW----------- 337 E + +R +L THYR P+DFT + L A+ LL + Sbjct: 292 EAHE-------PMALRFYLLQTHYRSPMDFTWEGLESAKRGYGRLLHAYREVRGRKKTAP 344 Query: 338 ----PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 P+ + ++ A + A+ +DL+T A+ AL E H LLP A + + Sbjct: 345 PGTTPELERALDALEKAFMEAIEDDLSTPEALAALFAFLPEL---HKLLPEAKAES-LAR 400 Query: 394 IEVCKEHLNKNI-SIAIEKLVQERLI-----------------LLKMKKFSSADYIRKQL 435 E L + I + E++++ER+ + K + +D IR++L Sbjct: 401 AEAVFHTLGEGILGLFPERVLEERVSGPLLEGLIALLLELREEARRAKDYEKSDLIRERL 460 Query: 436 ESKGFILEDYKN 447 + G I+ED K Sbjct: 461 RALGVIVEDTKE 472 >gi|150003580|ref|YP_001298324.1| cysteinyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482] gi|187629793|sp|A6KZ38|SYC_BACV8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149932004|gb|ABR38702.1| cysteinyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482] Length = 493 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 177/494 (35%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I ++E T K +++ IR +L HYR +DF+ ++RLTEA L Sbjct: 292 INLDEFFHGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGL 351 Query: 335 SK---WPQTSTSKGIID--PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 + QT+ +G+ D +A+ +DLN+ I L AR ++T + + Sbjct: 352 ERITPATQTTGIEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATISAED 411 Query: 382 LPIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + H+ E+ KE N ++ L+++R+ K ++++D IR Sbjct: 412 LEELKSMFHLFMYEILGLKEEAANNEAHEEAYGKVVDMLLEQRMKAKANKDWATSDKIRD 471 Query: 434 QLESKGFILEDYKN 447 +L + GF ++D K+ Sbjct: 472 ELAALGFEVKDTKD 485 >gi|254881192|ref|ZP_05253902.1| cysteinyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA] gi|254833985|gb|EET14294.1| cysteinyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA] Length = 493 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 177/494 (35%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I ++E T K +++ IR +L HYR +DF+ ++RLTEA L Sbjct: 292 INLDEFFHGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGL 351 Query: 335 SK---WPQTSTSKGIID--PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 + QT+ +G+ D +A+ +DLN+ I L AR ++T + + Sbjct: 352 ERITPATQTTGIEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATISAED 411 Query: 382 LPIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + H+ E+ KE N ++ L+++R+ K ++++D IR Sbjct: 412 LEELKSMFHLFMYEILGLKEEAANNEAREEAYGKVVDMLLEQRMKAKANKDWATSDKIRD 471 Query: 434 QLESKGFILEDYKN 447 +L + GF ++D K+ Sbjct: 472 ELAALGFEVKDTKD 485 >gi|257077300|ref|ZP_05571661.1| cysteinyl-tRNA synthetase [Ferroplasma acidarmanus fer1] Length = 456 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 249/475 (52%), Gaps = 48/475 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I+NTL +K +F+ + P I M+VCGPTVYD +HIG+AR I FDV+ + LR V Sbjct: 3 IHNTLGQKDEDFKPMHPGRINMFVCGPTVYDHSHIGHARTNIFFDVIAKYLRA--RGYSV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y++NITDIDDKII RA +E S + +++ + +L + + RA+ Sbjct: 61 FYLQNITDIDDKIINRAAEEGKKY------SEVADHYFEEYKEIMGKLRIDSINYYARAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I ++I I+ I+ HG+AYE + + F+ +YG S + +D+ + R K KK Sbjct: 115 LYIDEIIGQIKKIMEHGYAYETADGVYFNVRKFSDYGELSNQNMDQIRENARGVIKEEKK 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF+LWK+ P EP WESPWG+GRPGWHIE +A++ Y G +DIHGGG DLIFPHHE Sbjct: 175 SPEDFVLWKKMKPGEPFWESPWGKGRPGWHIEDTAITEAYFGSEYDIHGGGNDLIFPHHE 234 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 EIAQ A WIH G +N+ KMSKS NFI ++L +S+ Sbjct: 235 AEIAQMRSVSGKRYLARYWIHTGMVNINKEKMSKSLKNFIQTKDIL-------KSYKPEE 287 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSKGI--IDPAVLSALYN 357 +R AM+ ++Y ID++ Q + ++ I +K + ++++G ID + +N Sbjct: 288 LRFAMINSNYNTVIDYSAQLMESSKDAVERINIFYNKMKELNSTEGSYNIDAEEIINHFN 347 Query: 358 -----DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKL 412 + +T S I+ ++ KN + + AS I +E LN I K Sbjct: 348 AVMDKNFDTRSLIREFLAFISDANKNMENISSAAASKLIHIVEYVDSFLN----IIYRKQ 403 Query: 413 VQERLIL----------LKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 QE I+ K ++ +DYIRK+LE +E DNG + W Sbjct: 404 NQESNIMDIIIDIRNHARSQKDYAISDYIRKKLEENNIYIE-----DNGNKTIWW 453 >gi|312194278|ref|YP_004014339.1| cysteinyl-tRNA synthetase [Frankia sp. EuI1c] gi|311225614|gb|ADP78469.1| cysteinyl-tRNA synthetase [Frankia sp. EuI1c] Length = 506 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 138/337 (40%), Positives = 193/337 (57%), Gaps = 29/337 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYG 62 + +Y+T R++ F+ + P ++ +YVCGPTV H+G+ R + FD+L R LL Y Sbjct: 2 SLHLYDTRTRRVRPFEPLRPGHVGVYVCGPTVQSAPHVGHLRSAVAFDLLRRWLLESGY- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+N+TDIDDKII A +E S+ + ++ T+ F + L PT Q Sbjct: 61 --AVTYVQNVTDIDDKIIVNADREGVSV------WELATRETRSFDDAYRAVGILPPTIQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HIP+M LI ++ G+AYE + + F +YG+ S ++ D + V + Sbjct: 113 PRATGHIPEMFALIGELMAAGYAYEGDGSVWFRVGRFGDYGALSNQRPDAMQASAEV--E 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W+SPWG GRPGWH+ECSAM+ YLG VFDIHGGGLDL+F Sbjct: 171 AGKEDPRDFALWKAARPGEPAWDSPWGSGRPGWHLECSAMAGKYLGDVFDIHGGGLDLVF 230 Query: 243 PHHENEIAQSCCADRIE--------KTANIWIHNGFLNLEGRKMSKSNGN-FITINELLE 293 PHHENE AQ+ CA + A W+H G L G KMSKS GN F + L + Sbjct: 231 PHHENERAQTVCASAARAHDGSGEPEMARYWMHVGLLTTGGTKMSKSLGNSFFVTDALAQ 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + V+R +L HYR ++++ L E+ Sbjct: 291 VRP--------QVLRYHLLSAHYRSSLEYSPDALAES 319 >gi|291515561|emb|CBK64771.1| cysteinyl-tRNA synthetase [Alistipes shahii WAL 8301] Length = 491 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 259/493 (52%), Gaps = 55/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K+ +YNTL R+ F+ + P + MYVCGPTVY H+G+ARP + FD+L+R L+ Sbjct: 1 MDSKLVLYNTLTRRKEVFEPLVPGRVGMYVCGPTVYGDPHLGHARPAVTFDLLFRYLKAS 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + T+++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VAHYYTERYHRA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSR 167 L P+ +P A+ HI + I ++ I+ G+AYEAN + FD ++ NYG S Sbjct: 113 MDALNVETPSIEPYASGHIIEQIEFVKRILADGYAYEANGSVYFDVEKYNAKYNYGRLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K++ DF LWK+++P W SPWG G PGWH+ECSAMS+ Sbjct: 173 RNLDDIVANTRELDGQSDKRHSYDFALWKKASPEHIMRWPSPWGEGFPGWHMECSAMSTR 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQS A +A W+HN + + G+KM KS GNF Sbjct: 233 YLGERFDIHGGGMDLMFPHHECEIAQSTAA-LGHDSARYWLHNNMMTVNGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ E + +++ IR +L HYR +DF+ + L AE L + + + Sbjct: 292 ITLEEFFTGSHPKLSQAYSPMTIRFFVLQAHYRSTLDFSNEALQAAEKGLDRLMKGIETL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHKLARESTKNHD----------- 380 G I PA +S A+ +DLN+ I AL R + D Sbjct: 352 GKIKPAEVSTVDPAELETRCAEAMDDDLNSPMVISALFDWVRTINQLADGSQTITAADLA 411 Query: 381 --LLPIFNASAHILGIEVCKEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + + ILG+ K + ++ +E L+ ERL K ++++D IR Sbjct: 412 ALTATVRRYAFDILGLRDEKAAGTASGRDYVTPLVEMLLDERLKARAAKDWAASDRIRDG 471 Query: 435 LESKGFILEDYKN 447 L + G ++D K+ Sbjct: 472 LTAAGIRVKDRKD 484 >gi|237711499|ref|ZP_04541980.1| cysteinyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA] gi|229454194|gb|EEO59915.1| cysteinyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA] Length = 493 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 176/494 (35%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I ++E T K +++ IR +L HYR +DF+ ++RLTEA L Sbjct: 292 INLDEFFHGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGL 351 Query: 335 SKWPQTSTSKGI-----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 + ++ + GI + +A+ +DLN+ I L AR ++T + + Sbjct: 352 ERITPSAQTTGIEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATLSAED 411 Query: 382 LPIFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + H ILGI+ E + ++ L+++R+ K ++++D IR Sbjct: 412 LEELKSVFHLFMYKILGIKEEAANNEAREEAYGKVVDMLLEQRMKAKANKDWATSDKIRD 471 Query: 434 QLESKGFILEDYKN 447 +L + GF ++D K+ Sbjct: 472 ELAALGFEVKDTKD 485 >gi|284929429|ref|YP_003421951.1| cysteinyl-tRNA synthetase [cyanobacterium UCYN-A] gi|284809873|gb|ADB95570.1| cysteinyl-tRNA synthetase [cyanobacterium UCYN-A] Length = 482 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 170/489 (34%), Positives = 249/489 (50%), Gaps = 72/489 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R F ++ + ++MY CG T YDF H+G+AR I++D + L + E V Sbjct: 4 IYNTLTRTKEPFITLEEARVKMYCCGITTYDFCHLGHARTCIIWDTVRNYLEWIGYE--V 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV+N TD+DDKI+ RA +E ++ +++K + +D RL + PR T Sbjct: 62 KYVQNFTDVDDKILSRAIKEKTTMEE------VSNKFINAYFEDMERLNVKKASVYPRVT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP---- 180 + I + LI + GHAY + ++ FD S +YG S RK+++ K G RV Sbjct: 116 HIIDDIQNLIGELEKSGHAYLSEGDVYFDIKSYKDYGKLSGRKLEDLKAGASGRVSLEDF 175 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K K++PADF +WK++ P E W+S WG+GRPGWHIECSAM LG+ D+H GG DL Sbjct: 176 QKNKKRDPADFAVWKKAKPTEKSWDSKWGKGRPGWHIECSAMIKKELGETIDLHVGGSDL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS E + W HNG + ++G KMSKS GNF TI ELL+ Sbjct: 236 IFPHHENEIAQSEAITGKE-LSRYWSHNGMVKVDGEKMSKSLGNFTTIRELLD------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------- 347 + V+RL +L THYR P+DF+ L A + W + S G++ Sbjct: 288 QFEPMVVRLFILQTHYRNPLDFSHNSLVAA---TNSWQ--TLSDGLLFGYQYGEKLNFKN 342 Query: 348 DPAV----------LSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------- 383 +PA A+ +D N + L ++A+ K ++L Sbjct: 343 NPATELLPDLVNRFKKAINDDFNFAGGLAVLFEIAKNLRKESNVLTHTGVTTLSSNFLET 402 Query: 384 ---IFNASAHILGIEVCK-----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A +LG+E + E K I++LV++R I K++ +D IR +L Sbjct: 403 QWHTLKSLAKLLGLEANQTTLKIELFKKLTDEEIDELVKKRKIAKNAKQYKESDLIRDKL 462 Query: 436 ESKGFILED 444 + L D Sbjct: 463 KENNITLLD 471 >gi|315654539|ref|ZP_07907445.1| cysteinyl-tRNA synthetase [Mobiluncus curtisii ATCC 51333] gi|315491003|gb|EFU80622.1| cysteinyl-tRNA synthetase [Mobiluncus curtisii ATCC 51333] Length = 506 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 167/505 (33%), Positives = 256/505 (50%), Gaps = 91/505 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+++ ++ +F + P + +Y+CGPTV H+G+ R + FDVL R LR Sbjct: 1 MKIFDSATHEVRDFVPVTPGKVGLYLCGPTVQGAPHLGHLRAALNFDVLVRWLRRR--GY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ A+ +P + + + ++F L L PT P Sbjct: 59 AVTYVRNVTDIDDKIL--AKSAAAGVPWWE----LAAHFEREFDFAYRALNTLPPTVTPH 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-------DEQKMG 176 AT HIPQ I LI+ ++ GHAY + N + F +S+P+YG+ + + + DE ++ Sbjct: 113 ATGHIPQQIALIERLLERGHAYSDTNGNVYFSVTSLPDYGALTNQPVSELVSTEDESQID 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 T + K++P DF LWK + EP W++PWGRGRPGWH+ECSAMS YLG FDI Sbjct: 173 TAT--EVGKRDPRDFALWKAAKDDEPSDAAWDAPWGRGRPGWHLECSAMSQAYLGDTFDI 230 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHENE+AQS A A W+HN +L L+G KMSKS GN + + LLE Sbjct: 231 HGGGLDLRFPHHENEMAQSHGAGW--GFARYWMHNAWLTLKGEKMSKSVGNVVGVRRLLE 288 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------- 337 W V+R++++ THYR ++++ L +A +L K+ Sbjct: 289 -------DWNPAVVRMSVVTTHYRTNLEYSEDSLKQAALLWDKFTSFLQQVPRSVPAGAG 341 Query: 338 -PQTSTSKGIIDPAV---------------LSALYNDLNTVSAIQALH---KLARESTKN 378 P+ G ++P + ++AL +DLN A+ ALH K + + + Sbjct: 342 APEVCNIYGDVEPDLARQRELTAVELPDDFVAALDDDLNVPGALPALHRALKTGKAALNS 401 Query: 379 HD-------------LLPIFNASAH----ILGIEVCK---------EHLNKNISIAIEKL 412 D +L +F H + + + + N +++ + L Sbjct: 402 GDTSGAQQAALQLRAMLDVFGLDPHDPAWVASVSATETPGTAPSPTDTPNDSLTSLVTAL 461 Query: 413 VQERLILLKMKKFSSADYIRKQLES 437 +Q+R + + AD IR L++ Sbjct: 462 LQQRAEAKAQRDWGRADAIRDLLQT 486 >gi|301167823|emb|CBW27408.1| cysteinyl-tRNA synthetase [Bacteriovorax marinus SJ] Length = 487 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 139/323 (43%), Positives = 189/323 (58%), Gaps = 16/323 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R EF+ + +++Y+CGPTVYD HIGN R I F+++ L + Sbjct: 3 LKIYNTLSRSKEEFKPLVEGKVKLYLCGPTVYDLLHIGNFRGAITFNLVRNWLELSGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V N TD+DDKII+RA E PI +I+ K +F KD RL TH P+ Sbjct: 62 -VTFVYNYTDVDDKIIKRANDEGVE-PI-----VISEKYIAEFEKDFNRLGLKKHTHNPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++I ++ +I + AYE + E+ + + +YG S++ +DE G RV Sbjct: 115 VTEFMDEIINYVETLIKNDKAYEIDGEVFYAIDNYTDYGKLSKKNLDELNAGQRVEVDSR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM LG+ DIHGGG+DLIFPH Sbjct: 175 KRNPYDFVLWKPSKEGEPHWTSPWGEGRPGWHIECSAMIKAILGETIDIHGGGIDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ + K N W+HN F+NL+ KMSKS GN IT ++ + Sbjct: 235 HENEIAQGEGCN-CTKYCNYWMHNEFINLKDEKMSKSLGNVITGRAFMD-------QYHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRL 327 V++ ML HYR + T +++ Sbjct: 287 EVLKFLMLSAHYRSNFNVTDEKI 309 >gi|171912658|ref|ZP_02928128.1| cysteinyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136] Length = 520 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 170/479 (35%), Positives = 254/479 (53%), Gaps = 51/479 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++TL R E + +R Y CGPTVY AHIGN R I DV R++ Sbjct: 48 RLQLHDTLTRTAREVWPSEAGTLRFYGCGPTVYGPAHIGNFRTFIAQDVFRRVVEL--SG 105 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +VRNITD+DDK I +++ + T T++F D L L P +P Sbjct: 106 TPTLHVRNITDVDDKTIRDSQK------AGQTLLEFTRYWTERFHADCAALNLLPPHVEP 159 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--- 179 +AT+HI I +I+++I HG+AY A + + F SS +YG S + E K+G Sbjct: 160 KATDHIAHQIKMIEDLISHGNAYAAPDGSVYFRVSSYADYGKLSHLEDRELKVGAAQTAN 219 Query: 180 -PEKYHKKNPADFILWK--RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 ++Y K + ADF LWK ++ E WESPWG+GRPGWH+ECSAM+ YLG FD+H G Sbjct: 220 DSDEYTKDSLADFALWKAHKTDDGENFWESPWGKGRPGWHLECSAMALEYLGVEFDLHSG 279 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+DL+FPHHENEIAQSCCA + A W+H L ++G KMSKS GN T+ +L Sbjct: 280 GIDLVFPHHENEIAQSCCATG-GRFARHWMHIAHLMVDGGKMSKSLGNLYTLADL----- 333 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT---EAEILLSKWPQT------------- 340 G R + V+R +L HYR+P++FT+ L +A + L+K+ + Sbjct: 334 -GHRGYSPAVVRYTLLSGHYRQPLNFTLHSLDASHQALLKLAKFEKQLRALTQASEAPSL 392 Query: 341 ----STSKGIIDPAVLSALYNDLNTVSAIQALH---------KLARESTKNHDLLPIFNA 387 +T K I + L NDLN AI A+ L+ E+ K+ + F Sbjct: 393 DELKATGKADIFAEAWADLLNDLNVPGAIGAVFATLNKTKPAALSVEAAKSAWIGLHFVL 452 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +A L + V K+ ++ L +R + + ++++D +RKQ+E G+I++D K Sbjct: 453 AALGLELPVIKDEGEVEAPEEVKALADQRWNAKQARDWTTSDDLRKQIELLGWIVKDSK 511 >gi|241895151|ref|ZP_04782447.1| cysteinyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313] gi|241871647|gb|EER75398.1| cysteinyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313] Length = 471 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 250/491 (50%), Gaps = 56/491 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT+ F I I MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 IKMFNTMTLAKEPFHPIHDDTINMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYR--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ ++P + K F +DT L T +PR Sbjct: 60 TVNYVSNFTDVDDKMIKAAAEQGITVPE------LADKYIAAFNEDTAALNIKPATVRPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRV--P 180 AT HI Q+I + ++I G+AYE+ ++ + NYG+ + + + E R+ Sbjct: 114 ATEHIAQIIDFVADLIDKGYAYESAGDVYYRAKKFHNYGALAHQDLAEMTSNAAGRLNDE 173 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF +WK + WESPWG+GRPGWHIECS MS+ YLG FDIHGGG+D Sbjct: 174 ELERKEDPMDFAVWKGENGDGAIAWESPWGKGRPGWHIECSVMSTKYLGNHFDIHGGGID 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHH NEIAQS EK N W+HNGF+ + E KMSKS GNF+T+++LL+ Sbjct: 234 LAFPHHTNEIAQSEVHTG-EKFVNEWLHNGFVTVGDENEKMSKSLGNFVTVHDLLQQID- 291 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------WPQTSTSKG 345 V+R M T YR I ++ +T+A L + + + Sbjct: 292 -----DPMVLRFFMATTQYRRSIAYSESNMTQAAHNLDRIRTGYRNLAFRLTDAVAGDES 346 Query: 346 IIDPAVL-------SALYNDLNTVSAIQALHKL--------ARESTKNHDLLPIFNASAH 390 +ID +A+ +D N +A+ A+++L A E + I + Sbjct: 347 LIDDKASELVVQFNTAMDDDFNAPNALTAIYELVDLANQYAATEVVYQDTVNFILDKITV 406 Query: 391 ILGI-EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 ++ I V ++ + IE L+QER K F+ +D IR L +G ILED P Sbjct: 407 LMSIFGVDGLSDDELLDDDIEALIQERNDARTNKNFARSDEIRDSLAEQGIILED--TP- 463 Query: 450 NGQRMTRWKQK 460 + TRW +K Sbjct: 464 ---QGTRWHRK 471 >gi|296392881|ref|YP_003657765.1| cysteinyl-tRNA synthetase [Segniliparus rotundus DSM 44985] gi|296180028|gb|ADG96934.1| cysteinyl-tRNA synthetase [Segniliparus rotundus DSM 44985] Length = 467 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 155/474 (32%), Positives = 237/474 (50%), Gaps = 49/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + EF + P + +Y+CG TV H+G+ R +VFDVL R L + Sbjct: 3 LRLYDTRTRVVREFAPLRPGQVSVYLCGATVQGKPHVGHLRSAVVFDVLRRWLLAKGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A + + + ++F RL L P+ +PR Sbjct: 62 -VLFIRNVTDIDDKILAKAAE------AGRPWWEWAATHEREFSNAYNRLGVLPPSAEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM I+ +I GHAY ++ FD S+P YG S + D+ G Sbjct: 115 ATGHITQMTTCIERLIERGHAYTGAGDVYFDVRSLPEYGKLSGHQPDDVHQGESA--GAG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W +PWG GRPGWH+EC+AM++ YLG FDIH GG+DL+FPH Sbjct: 173 KRDPRDFTLWKGSKPGEPWWPTPWGPGRPGWHLECTAMATAYLGSEFDIHCGGMDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQ+ A ++ A W+HNG+L+L G KMSKS GN +++ ELL + Sbjct: 233 HENELAQAHGAG--DQFARFWLHNGWLSLGGEKMSKSLGNVLSLEELLTAVR-------P 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSAL 355 +R + HYR +F+++ + EA + + G + SAL Sbjct: 284 QELRYYLGCAHYRSTQEFSIEAVVEAAVAYQRLESFVLRAAEQFGEIPVGQVADEFASAL 343 Query: 356 YNDLNTVSAIQALHKLARESTKN---------------HDLLPIFNASAH----ILGIEV 396 +DL A+ L + A++ +L + G E Sbjct: 344 DDDLAVPKALAELQRQAKQGNTELADADPAAAATAASVRAMLAVLGCDPFDPMWASGRER 403 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ++ + + + +E + R K +++AD +R +L G I+ D PD Sbjct: 404 EEKAAFRAVDVLVEAELSRREAARAGKDWATADDVRDRLRKAGIIVTD--GPDG 455 >gi|37520420|ref|NP_923797.1| cysteinyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] gi|61216274|sp|Q7NMB5|SYC_GLOVI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|35211414|dbj|BAC88792.1| cysteinyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] Length = 482 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 173/499 (34%), Positives = 254/499 (50%), Gaps = 68/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 ++IYNTL R+ F ++ ++MYVCG TVYD+ H+G+ R +V+D + R L R Y Sbjct: 3 LQIYNTLTRRKEPFVPLEAGTVKMYVCGVTVYDYCHLGHGRTYVVWDTVRRYLISRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+N TD+DDKI+ RA+QE ++ + K + +D RL L Sbjct: 61 --AVTYVQNFTDVDDKILRRAQQEGTTM------EAVAEKYIAAYFEDMDRLNVLRADSY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----R 178 PRAT +P++ LI + G+AY A ++ + YG S +++ E + G + Sbjct: 113 PRATQTMPEIGALIDRLTSIGYAYPAAGDVYYSVRRFAEYGKLSGKRLAELEAGASERLQ 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E KK+P DF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 173 DEELARKKDPFDFALWKGAKPGEPAWDSPWGAGRPGWHIECSAMVRKSLGETIDIHAGGE 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL-----EGRKMSKSNGNFITINELLE 293 DL FPHHENEIAQS + A W+HN FLN+ KMSKS GNF T+ +L E Sbjct: 233 DLQFPHHENEIAQSEAVTG-KPLARYWMHNAFLNVVNSSGAEEKMSKSLGNFKTLRDLFE 291 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ---------RLTEAEILLSKW----PQT 340 +P +RL +L T YR PI F+ + R E + L+ W + Sbjct: 292 V-------FPPMALRLFLLKTSYRNPIAFSAEAFKGSEQNWRELEEVLQLAGWIAGQGRP 344 Query: 341 STSKGIIDPAVL---SALYNDLNTVSAIQALHKLARE-STKNHDLL---PI--------- 384 +T +P V A+ +D NT +A+ + L ++ + + H + P+ Sbjct: 345 ATDDIESEPWVRRFNEAMDDDFNTAAALAEVIALGKQLAGRYHAAIHGTPLADPARFARE 404 Query: 385 ---FNASAHILGIEVCKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 F ILG++ + ++ IE + R + + ++ AD IRKQL +G Sbjct: 405 WRTFALLCDILGLKAAEPEARQSALPEAEIEAQIALRRQAREERNWAEADRIRKQLLDQG 464 Query: 440 FILEDYKNPDNGQRMTRWK 458 +L D+K ++ T W+ Sbjct: 465 IVLIDHK-----EKPTTWR 478 >gi|167764089|ref|ZP_02436216.1| hypothetical protein BACSTE_02472 [Bacteroides stercoris ATCC 43183] gi|167698205|gb|EDS14784.1| hypothetical protein BACSTE_02472 [Bacteroides stercoris ATCC 43183] Length = 491 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 180/492 (36%), Positives = 258/492 (52%), Gaps = 54/492 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL RK F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEQQLTIYNTLNRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ I FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVKEILENGYAYESEGSIYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLGK FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGKHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT++E + K +++ IR +L HYR +DF+ + L AE L++ Sbjct: 292 ITLDEFFTGSNKTLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLARLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLP 383 I P S A+ +DLN+ I L AR T + L Sbjct: 352 EKIVPGKASTVNVKTLRAECYEAMNDDLNSPIVIAHLFDGARMINNIIAGNDTITAEDLK 411 Query: 384 IFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H ILG++ E ++ L+ ER+ K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLKEENTSNEEREAAFGKVVDMLLAERIKAKANKDWATSDKIRDEL 471 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 472 TALGFAIKDTKD 483 >gi|325000166|ref|ZP_08121278.1| cysteinyl-tRNA synthetase [Pseudonocardia sp. P1] Length = 440 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 165/449 (36%), Positives = 239/449 (53%), Gaps = 51/449 (11%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGEKCVTYVRNITDIDDKIIERAR 84 + MYVCG TV HIG+ R + +DVL R L R Y VT VRN+TDIDDKI+ ++ Sbjct: 1 MSMYVCGATVQGLPHIGHVRSGLNYDVLRRWLGRSGYD---VTLVRNVTDIDDKILRKS- 56 Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 E P + + + + F L CL P+ +PRAT HI QM+ LI+ +I GH Sbjct: 57 -EAAGRPWWE----WAATHERAFTAAYDALGCLPPSVEPRATGHITQMVELIERLIERGH 111 Query: 145 AYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 AY AN ++ F ++P YG+ S +K+D+ G E K++P DF LWK + P EP W Sbjct: 112 AYAANGDVYFAVRTMPEYGTLSGQKVDDVHQGEG--EAGDKRDPLDFTLWKAAKPGEPSW 169 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 +PWG GRPGWH+ECSAM++ YLG FDIHGGGLDL+FPHHENE AQS A + A Sbjct: 170 PTPWGHGRPGWHLECSAMATAYLGPEFDIHGGGLDLVFPHHENERAQSHAAG--DPFARF 227 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT 323 W+HN ++ + G KMSKS GN + I LL+ + PV +R ++ HYR I+++ Sbjct: 228 WLHNAWVTMGGEKMSKSLGNTLAIEALLQRVR--------PVELRYYLVGPHYRSAIEYS 279 Query: 324 VQRLTEAEILLSKWP----QTSTSKGIIDPAV------LSALYNDLNTVSAIQALHKLAR 373 L EA + + G+ +P+ +AL +DL T A+ A+HKL R Sbjct: 280 DAALDEAVAAYRRVESFVNRVRERHGLPEPSTELPAEFTAALDDDLGTPIALGAVHKLVR 339 Query: 374 ESTKNHD---------LLPIFNASAHILGIE---------VCKEHLNKNISIAIEKLVQE 415 E D A+ +LG++ + + + +E +++ Sbjct: 340 EGNTALDAGDARTASQAASCVRATTGVLGLDPLAAGGAADNAGDAARQALGTLVESMLER 399 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILED 444 R + F++AD +R +L + G +ED Sbjct: 400 RQAARARRDFATADRLRDELLAAGIAVED 428 >gi|320535476|ref|ZP_08035582.1| cysteinyl-tRNA synthetase [Treponema phagedenis F0421] gi|320147668|gb|EFW39178.1| cysteinyl-tRNA synthetase [Treponema phagedenis F0421] Length = 486 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 255/489 (52%), Gaps = 64/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +KI EF+ + + Y CGPTVY++AHIGN R + D+L R L + + Sbjct: 3 LRVYNTLGKKIEEFKPLSGMKVGFYGCGPTVYNYAHIGNLRAYVFQDILTRTLSFLGYD- 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT+V NITD+ +DK+++ A++ S+ I T+ F DT RL Sbjct: 62 -VTHVMNITDVGHLSGDNDEGEDKMVKSAKERGKSV------MQIADYYTKAFFTDTERL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L PT +AT+HIP+MI LI+ + GH Y + + +D S+ P+YG + +DE K Sbjct: 115 NILKPTIVCKATDHIPEMIALIKRLEERGHTYFSEGNLYYDISTFPDYGKMAGFTLDELK 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G RV +KKNP DF+LW + E W+SPWG+G PGWHIECSAMS YLG+ F Sbjct: 175 AGARVAIDKNKKNPHDFVLWFTQSKFENQALVWDSPWGKGYPGWHIECSAMSMKYLGEQF 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 +IH GG+D I HH NEIAQS A + W+HN FL + KMSKS+G FIT+ + Sbjct: 235 EIHSGGIDHIRIHHTNEIAQSEGATG-KPWVKYWMHNEFLVMNKGKMSKSSGEFITLQAV 293 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------------------- 331 ++ + + R +L HYR + F+ + + A+ Sbjct: 294 ID------KGFDPIDYRFLLLGGHYRSQLTFSWEAMETAKNARKSLQQRIENLKSGIENL 347 Query: 332 ILLSKWPQTSTSKGII--DPAV------LSALYNDLNTVSAIQALHKLAREST-KNHDLL 382 L+ + S ++ ++ PA+ + AL +DL+T AI + +L ++ T D L Sbjct: 348 SLIEEKISASDAEKLLRNSPALPYFESFVQALEDDLSTPRAISEMQQLIKDKTIYAEDRL 407 Query: 383 PIFNASAHILGI---EVCKEHLNKNISIAIEK----LVQERLILLKMKKFSSADYIRKQL 435 + I G+ E K + NK S E+ L+QER K + AD IR +L Sbjct: 408 KTLSIFDQIFGLNLFEKSKSNSNKQESAMDEQSILTLIQERTDAKNAKNYQRADEIRDEL 467 Query: 436 ESKGFILED 444 +KG ILED Sbjct: 468 RTKGIILED 476 >gi|312138100|ref|YP_004005436.1| cysteine-tRNA ligase cyss [Rhodococcus equi 103S] gi|325674996|ref|ZP_08154683.1| cysteine--tRNA ligase [Rhodococcus equi ATCC 33707] gi|311887439|emb|CBH46751.1| cysteine-tRNA ligase CysS [Rhodococcus equi 103S] gi|325554582|gb|EGD24257.1| cysteine--tRNA ligase [Rhodococcus equi ATCC 33707] Length = 469 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 246/478 (51%), Gaps = 68/478 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +++Y+T+ R +F + P + +Y+CG TV HIG+ R + FDVL R LL + Y Sbjct: 3 LRLYDTVTRAPRDFVPLTPGHASVYLCGATVQGEPHIGHVRSGVAFDVLRRWLLAHDYD- 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKI+ +A + P + + + F +L L P+ +P Sbjct: 62 --VAFVRNVTDIDDKILNKAAE--AGRPWWEWAATFE----RSFDWAYRQLGVLPPSVEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+ QM+ ++Q +I +GHAY + ++ FD S P YG S K+D+ G Sbjct: 114 RATGHVTQMVEMMQRLIDNGHAYASGGDVYFDVRSFPEYGRLSGHKLDDVHQGESAGAG- 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W +PWG GRPGWH+ECSAM+ YLG+ FDIH GGLDL+FP Sbjct: 173 -KRDPRDFTLWKAAKPGEPSWPTPWGPGRPGWHLECSAMAVFYLGQAFDIHCGGLDLVFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ CA + A W+HNG++ G KMSKS GN +++ +L+ + Sbjct: 232 HHENEIAQAKCAG--DDFAQYWLHNGWVTKSGEKMSKSLGNVLSVPNVLKLVR------- 282 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA-------------------EILLSKWPQTSTSK 344 +R + HYR ++++ + L EA E+ + KW + Sbjct: 283 PQELRYYLGSAHYRSMLEYSEEALQEAAAGYRRCESFVQRTAERAGEVQVGKWTEE---- 338 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARES-----TKNHD----LLPIFNASAHILGIE 395 +AL +DLN +A+ +H RE + + D L A ILG++ Sbjct: 339 ------FAAALDDDLNVPAALAEIHGRVREGNIALESGDADGARALAGQVRAMLGILGVD 392 Query: 396 VCKEHL-----NKNISIAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILED 444 E + A++ LVQ L + K ++ AD +R +L + G + D Sbjct: 393 PLDEQWTAASDDAAAMGALDVLVQAELDRRQQARADKNWAVADEVRDRLAAAGIAVTD 450 >gi|329954112|ref|ZP_08295207.1| cysteine--tRNA ligase [Bacteroides clarus YIT 12056] gi|328528089|gb|EGF55069.1| cysteine--tRNA ligase [Bacteroides clarus YIT 12056] Length = 491 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 178/492 (36%), Positives = 261/492 (53%), Gaps = 54/492 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEQQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ I FD + +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVKEILKNGYAYESEGSIYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLGK FDIHGGG+DL+FPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGKHFDIHGGGMDLVFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT++E + K +++ IR +L HYR +DF+ + L AE L++ Sbjct: 292 ITLDEFFTGSNKTLAQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLTRLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLP 383 I P S A+ +DLN+ I L AR T + L Sbjct: 352 EKITPGKASTVDVKTLRAKCYEAMNDDLNSPIVIAHLFDGARMINNIIAGNDTITAEDLQ 411 Query: 384 IFNASAH-----ILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQL 435 + H ILG++ + + ++ L++ER+ K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLKEENNSNEEREAAFGKVVDMLLEERIKAKANKDWATSDKIRDKL 471 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 472 TALGFAIKDTKD 483 >gi|283769304|ref|ZP_06342204.1| cysteine--tRNA ligase [Bulleidia extructa W1219] gi|283104080|gb|EFC05463.1| cysteine--tRNA ligase [Bulleidia extructa W1219] Length = 443 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 173/470 (36%), Positives = 243/470 (51%), Gaps = 60/470 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT +I EF+ + +YVCGPTVY++AHIGNARPM+VFDVL R+ G K Sbjct: 1 MKLYNTKTLEIEEFKPRKEGEVSLYVCGPTVYNYAHIGNARPMVVFDVLKRVFEAI-GLK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E S I ++ Q + +L P H PR Sbjct: 60 -VNYVSNYTDVDDKIIHKALEEGVSE------EEIANRYIQAYEDLRKQLNIEQPDHCPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + +I I+ + GHAYE N ++ F S+ YGS S + ++E G R+ E Sbjct: 113 VTHTMDSIISFIKGLQDQGHAYEVNGDVYFSVDSVSEYGSLSHQNLEELDAGNRIAENEQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+ T WESPWG+GRPGWH EC M + LG+ DIHGGGLDL FPH Sbjct: 173 KKNPLDFTLWKK-TDKGIQWESPWGKGRPGWHTECVVMINENLGQTIDIHGGGLDLKFPH 231 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ E A+ W+HN +N++G KMSKS GN T+ + TK+ G Sbjct: 232 HENEAAQQRAMFGHE-LADHWMHNAMVNIDGEKMSKSLGN--TLWAMDVTKELG-----T 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-----EILLS--------KWPQTSTSKGIIDPA- 350 + R + HYR+ ++F+ + + A +IL++ K+ + + P+ Sbjct: 284 NLTRWLISSVHYRKELNFSDETIQAAKTELEKILMAVHNATLKVKFADVEWNFSVDTPSF 343 Query: 351 --VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS--------AHILGIEVCKEH 400 + + NDLNT +A + + +E NAS I+G+ E Sbjct: 344 DRFIKQMENDLNTPNAYTVIFETVKE----------LNASIRQKEPDYTRIMGLVNSIEK 393 Query: 401 LNKNISIAIEKLV---------QERLILLKMKKFSSADYIRKQLESKGFI 441 + + I +EK+V Q L K + F AD R L+ KG I Sbjct: 394 MMDVLGIKLEKVVVSKEDKQIYQAWLAAKKERNFDQADQYRNILQEKGLI 443 >gi|317404801|gb|EFV85180.1| CysS protein [Achromobacter xylosoxidans C54] Length = 484 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 174/496 (35%), Positives = 251/496 (50%), Gaps = 55/496 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ +RMYVCG TVYDF H+G+AR ++ FDV+ R LR Sbjct: 2 LQIYNTLSRTKEPFKPAQAGQVRMYVCGMTVYDFCHLGHARMLVSFDVVQRWLRA--SGL 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T D L +P +PR Sbjct: 60 AVDYVRNITDIDDKIIRRA------VETGRRIGEVTEFYIAAMHADERALGVASPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +M+ +I + G AY+A++ ++ + YG S + +D+ + G RV Sbjct: 114 ATQYVGEMLDIIGKLEQKGLAYQADDGDVNYAVRGFEGYGKLSGKTLDDLRAGERVAVGS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP WESP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 AKRDPLDFVLWKSAKEEEPADTKWESPYGLGRPGWHIECSAMSKSLLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-------E 293 FPHHENEIAQ+ A ANIW+H G L ++ KMSKS GNF TI + + + Sbjct: 234 KFPHHENEIAQTEGA-FGGTLANIWMHCGPLMVDSDKMSKSLGNFRTIRQTIAQGEPAAD 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGII- 347 T + A ++R ++ HYR P ++T L +A+ L + Q + +GI Sbjct: 293 TADYRVNPREAEMVRFFIVRNHYRSPQNYTPDNLVDAQNALDRLYQALQNVPADDQGIDW 352 Query: 348 -DP---AVLSALYNDLNTVSAIQALHKLARESTKNH--------------------DLLP 383 +P A +A+ +D N+ A+ AL +LA E+ + D Sbjct: 353 NEPQAQAFKAAMDDDFNSSGAVAALFELASEANRGKSARSAGQLKALGGLLGLLQQDPAA 412 Query: 384 IFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 F +S + + + + AI+ L+ R + F+ AD IR +L G L+ Sbjct: 413 YFQSSTRYSAAGMEQGARAELDAAAIQALIDARAAAKAARDFAQADRIRAELREAGIELD 472 Query: 444 DYKNPDNGQRMTRWKQ 459 D +T+W++ Sbjct: 473 DKPGG-----LTQWRR 483 >gi|330470432|ref|YP_004408175.1| cysteinyl-tRNA synthetase [Verrucosispora maris AB-18-032] gi|328813403|gb|AEB47575.1| cysteinyl-tRNA synthetase [Verrucosispora maris AB-18-032] Length = 471 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 177/479 (36%), Positives = 254/479 (53%), Gaps = 62/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + +F + + +Y+CG T+ HIG+ R + +DVL R L E Sbjct: 3 LRLYDTATRSVRDFVPREAGKVGVYLCGLTLQAPPHIGHLRSGVNYDVLRRWLLAAGFE- 61 Query: 65 CVTYVRNITDIDDKIIERAR-QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT++RN+TDIDDKI+ +A+ QE P I N + + L L PT++P Sbjct: 62 -VTFIRNVTDIDDKILIKAQEQERP-------FWSIAYANELKLAEAYRALNVLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT HIP+M LI +I GHAY A ++ + FD S P YG+ S + DE + P Sbjct: 114 RATGHIPEMHQLIAQLIERGHAYPATDDSGDVYFDVRSWPAYGALSNQSPDEMQSAADAP 173 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E+ K++P DF LWK P EP W SPWG GRPGWHIECSAM YLG FDIHGGG Sbjct: 174 ER-GKRDPRDFALWKGVKPGEPADAYWPSPWGLGRPGWHIECSAMCWRYLGAEFDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDLIFPHHENE+AQS AD A W+H+G L + G KM KS GN + +L Sbjct: 233 LDLIFPHHENELAQSQAADL--PFARYWVHHGLLGIGGTKMGKSLGNAL---DLAYVAGL 287 Query: 298 GGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEIL---LSKWPQTSTSK------GII 347 G R PV +R + HYR ID++ + L EA + + + Q S + G + Sbjct: 288 GVR----PVELRYYYVAAHYRSRIDYSEEALREAAVAYRRIEGFVQRSVERVGVGQLGEV 343 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARES----TKNHDL-----LPIFNASAHILGIEV-- 396 A +A+ +DLNT +A+ LH + R+ D+ L A ILG++ Sbjct: 344 PAAFAAAMDDDLNTSAALAVLHDVLRDGNNALAGGDDVTVRTALASVRAMLDILGVDPLD 403 Query: 397 -----------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ +++A+E+ Q R+ K +++AD +R QL+ G ++ED Sbjct: 404 PAWTGGARASDLRGVVDSLVALALEQRAQARV----RKDWAAADALRDQLKRAGVVVED 458 >gi|118431525|ref|NP_148045.2| cysteinyl-tRNA synthetase [Aeropyrum pernix K1] gi|150421675|sp|Q9YBK6|SYC_AERPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116062850|dbj|BAA80592.2| cysteinyl-tRNA synthetase [Aeropyrum pernix K1] Length = 472 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 176/505 (34%), Positives = 254/505 (50%), Gaps = 83/505 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NTL R+ F P + MYVCGPTVYD+ HIG+AR VFD + R LR + Sbjct: 2 IRVFNTLGRRKEVFNPYSPPLVGMYVCGPTVYDYTHIGHARTFTVFDAIKRYLRLRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR-----LACLAP 119 V +V+NITDIDDKII RAR+E ++ ++ V++ +R L L Sbjct: 61 -VFHVQNITDIDDKIINRAREE--------------GRDWREIVREYSRDYLEGLGSLGI 105 Query: 120 T--HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 H PR T+HI +I I+ +I G+AY A + + F+ P YG S + ++ Sbjct: 106 QIDHHPRVTDHISDIIRFIEGLIEKGYAYVAESGSVYFEVDKYPGYGMLSG-HLSKEAWR 164 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 + KK+P DF LWK + P EP WESPWGRGRPGWHIECS MSS YLG DIHGG Sbjct: 165 QEEDVLHEKKSPYDFALWKAAKPGEPSWESPWGRGRPGWHIECSVMSSRYLGSRIDIHGG 224 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+DL+FPHHENE AQS + W+H +L ++G KMSKS GN I + E L Sbjct: 225 GVDLVFPHHENERAQSESYFG-HRWVRYWLHASYLTIKGEKMSKSLGNIIPLREAL---- 279 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGI 346 R W +RL +L +HYR +D++ + L + L + Q + S KG Sbjct: 280 ---REWGPGPLRLWLLSSHYRSNLDYSEEALGQYRRLYERLRQAADSIGRRLERAEPKGR 336 Query: 347 IDPAVL--------------SALYNDLNTVSAIQALHKLAR------ESTKNHDLL---- 382 + L A+ +D N A+ +L + E T+++ LL Sbjct: 337 LGEGELETVERLKGVVRRWHEAMSDDFNMGKAMSSLWEFTTIYFREVEQTESYTLLWLSW 396 Query: 383 -------PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 ++ + I+ + L ++ ++ LV R L + K + AD IR +L Sbjct: 397 RILTGFNSVYAFAPDIVEARRPERSLEDSL---VQALVDVRSELRRRKMYDLADEIRSRL 453 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 GF+L D G++ T W+++ Sbjct: 454 AQLGFVLH-----DKGEK-TEWRRR 472 >gi|150401798|ref|YP_001325564.1| cysteinyl-tRNA synthetase [Methanococcus aeolicus Nankai-3] gi|187631641|sp|A6UWT0|SYC_META3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150014501|gb|ABR56952.1| cysteinyl-tRNA synthetase [Methanococcus aeolicus Nankai-3] Length = 479 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 242/487 (49%), Gaps = 65/487 (13%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +KIYNT + F+ I+ I+MYVCGPTVYD AH+G+ R + FD++ R L + Sbjct: 1 MKIYNTASKNKETFKTINNKKLIKMYVCGPTVYDHAHLGHGRTYVAFDIIRRYLEH--KN 58 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V + N TDIDDKII RA ++ +I ++ K F++D +L P Sbjct: 59 YIVQLIINFTDIDDKIINRANEQGTTIKE------LSDKFINSFLEDMEKLNVKPALIYP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R + HI ++I I+ + G+AY + + FDTS YG + I E+ + Sbjct: 113 RVSEHINEIIEFIKVLEKKGYAYATADGVYFDTSKYEKYGELRKINIKEE-TSEQKNINI 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKN DF LWK + P EP W+SPWG GRP WHIECSAMS YLG FDIHGGG DLIFP Sbjct: 172 NKKNQRDFALWKFAKPDEPKWDSPWGEGRPAWHIECSAMSLKYLGDNFDIHGGGCDLIFP 231 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENE AQS C D+ K N WIH GF+ + KMSKS GNF T+ +L E + Sbjct: 232 HHENEKAQSECYTDK--KWVNYWIHTGFVMVNNEKMSKSLGNFSTLKDLFE-------KY 282 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-------------IDP 349 A +IR +L HY P+D+T + ++ L K T + + ID Sbjct: 283 SAELIRFFLLERHYSSPLDYTEDAINHSKNNLDKLYNTIQNITVAFRNSEIKYKLNEIDK 342 Query: 350 AVLSALYN-----------DLNTVSAIQALHKLARESTK------NHDLLP--------- 383 + ++N + NT A++ + +++ K N D LP Sbjct: 343 NTIETIHNCTEKFYTAMDDNFNTAQALKYVFEVSTAINKYINNYANSDELPNYSIILKSY 402 Query: 384 -IFNASAHILGI---EVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLES 437 F I GI N NI+ I L++ R L K K ++ +D IR +L+ Sbjct: 403 EFFKMVGEIFGIFGSSTINTATNTNIAEENLINILMELRADLKKEKNYNLSDKIRDKLKE 462 Query: 438 KGFILED 444 ILED Sbjct: 463 MDIILED 469 >gi|16082163|ref|NP_394604.1| cysteinyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728] gi|21264025|sp|Q9HJ27|SYC_THEAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|10640458|emb|CAC12272.1| probable cysteinyl-tRNA synthetase [Thermoplasma acidophilum] Length = 452 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 246/465 (52%), Gaps = 46/465 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL R + EF+ ++ I M+VCGPTV D HIG+AR I FD + +LLR Sbjct: 1 MRFYNTLTRDVDEFKEMNSGRINMFVCGPTVQDHFHIGHARTYIFFDAVAKLLRNL--GY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITDIDDKII +AR+ +N + ++F++D + L + + + Sbjct: 59 SVFYLQNITDIDDKIINKARE------MNIQPQDVADMYLREFLEDMSALKVTSVNYFAK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +T +I ++I I +I G+AYE ++ + F+ S +YG S + +D+ G RV + Sbjct: 113 STLYINEIISQISRLIEKGYAYETSDGVYFEVSKFADYGQLSNQSLDQIIHGYRVAVNEN 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK+ P EP W+SPWG GRPGWHIE +A++ Y G +DIHGGG DLIFPH Sbjct: 173 KRNPEDFVLWKKRKPGEPYWDSPWGPGRPGWHIEDTAITETYFGPEYDIHGGGSDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE EIAQ + ++ WIH G +N+ KMSKS NF+TI E+L + + Sbjct: 233 HEAEIAQMRAISGRKYLSHYWIHTGMINVNNEKMSKSLKNFVTIREVL-------KEYRP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG----IIDPA-----V 351 +R A+L +YR +DF+ L E+ E L S + + + G DP+ + Sbjct: 286 EDLRYALLNANYRTQLDFSKGLLEESRKQVEYLNSTFRKLVNASGNSDLSADPSAVIKRM 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH------------DLLPIFNASAHILGIEVCKE 399 + ND + S + L A + KN D+ ++ A IL E + Sbjct: 346 VDEATNDFDFRSVFRDLIDFAGDLNKNIESISRPAAQKAIDVFRWVDSFAGILLPETAR- 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +S I+ L+ R L +KF AD IR L G +ED Sbjct: 405 -----LSGIIDDLLDLRKNLRTERKFQEADRIRDLLLKNGIHVED 444 >gi|293606585|ref|ZP_06688941.1| cysteinyl-tRNA synthetase [Achromobacter piechaudii ATCC 43553] gi|292814970|gb|EFF74095.1| cysteinyl-tRNA synthetase [Achromobacter piechaudii ATCC 43553] Length = 484 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 178/496 (35%), Positives = 256/496 (51%), Gaps = 55/496 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ +RMYVCG TVYDF H+G+AR ++ FDV+ R LR Sbjct: 2 LQIYNTLSRTKEPFKPAQAGQVRMYVCGMTVYDFCHLGHARMLVSFDVVQRWLRA--SGL 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + + I +T D L +P +PR Sbjct: 60 AVDYVRNITDIDDKIIRRA------VETSRRIGDVTDFYIAAMHADEQALGVESPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +M+ +I + +G AY+A++ ++ + P YG S + +D+ + G RV Sbjct: 114 ATQYVGEMLDIIGKLEQNGLAYQADDGDVNYAVRGFPGYGKLSGKTLDDLRAGERVAVGS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP WESP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 SKRDPLDFVLWKSAKADEPADTKWESPYGMGRPGWHIECSAMSKSLLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG- 299 FPHHENEIAQ+ A ANIW+H G L ++ KMSKS GNF TI + + + Sbjct: 234 KFPHHENEIAQTEGA-FGGTLANIWMHCGPLMVDSDKMSKSLGNFRTIRQTVALGEPAAD 292 Query: 300 ----RSWP--APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGII- 347 R P A ++R ++ HYR ++T L +A+ L + Q + +GI Sbjct: 293 DANYRVNPREAEMVRFFIVRNHYRSSQNYTPDNLVDAQNALDRLYQALQNVPADDQGIDW 352 Query: 348 -DP---AVLSALYNDLNTVSAIQALHKLARES--TKNHDLLPIFNASAHILGI------- 394 +P A +A+ +D N+ A+ AL +LA E+ +K+ A A +LG+ Sbjct: 353 NEPQAQAFKAAMDDDFNSSGAVAALFELASEANRSKSARAAGQLRALAAVLGLLQQDPAA 412 Query: 395 ---------EVCKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 E + + AI+ L+ R + F+ AD IR +L G L+ Sbjct: 413 YFQSPTRYSAAAIEQGQRATLDAAAIQTLIDARAAAKAARDFAEADRIRAELRDAGIELD 472 Query: 444 DYKNPDNGQRMTRWKQ 459 D +T+W++ Sbjct: 473 DKPGG-----LTQWRR 483 >gi|256372010|ref|YP_003109834.1| Cysteine--tRNA ligase [Acidimicrobium ferrooxidans DSM 10331] gi|256008594|gb|ACU54161.1| Cysteine--tRNA ligase [Acidimicrobium ferrooxidans DSM 10331] Length = 372 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 155/397 (39%), Positives = 220/397 (55%), Gaps = 30/397 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 ++IY+T +++ + + I++Y CG T YD AH+G+A + FDVL R L R+ Sbjct: 1 MRIYDTQAQRVVDLELRPGEEIKIYTCGITPYDAAHLGHAAVYVTFDVLARHLERHRQRA 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +CV RN+TD+DD I+ +AR+ + + + QF +D T L P +P Sbjct: 61 RCV---RNVTDVDDDILRKARE------LGTNYLDLAAMEIAQFDQDMTALGVRRPAVEP 111 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---- 179 RAT+ I +++ L+Q+++ GHAYE + + F +S P +GS S D R Sbjct: 112 RATSAIAEILSLVQDLVDSGHAYEVDGWVYFSVASEPTFGSISHLDRDTMIALARERGGD 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P+ K +P DF+LW+ S EP WES +G GRPGWHIECSA++ LG V DIHGGG D Sbjct: 172 PDDPRKHDPLDFVLWQPSLADEPAWESRFGPGRPGWHIECSALAMRELGPVVDIHGGGSD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHE E AQS A E W+H G + L+G KMSKS GN + + ELL Sbjct: 232 LIFPHHECEAAQS-RAITGEPFVRHWVHVGMVRLDGVKMSKSLGNLVFVRELL------- 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDL 359 + PA V+RLA+L HYR D+T L EA W T G +D V +AL NDL Sbjct: 284 KEVPAAVVRLALLSQHYRTSWDWTGGLLEEARERYGLWRAAGTGDGAVDE-VDAALDNDL 342 Query: 360 NTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 +T A++A+ + AR + +A +LG+E+ Sbjct: 343 DTPGALEAIDRAARAGRG-------VSEAARMLGVEL 372 >gi|294777611|ref|ZP_06743062.1| cysteine--tRNA ligase [Bacteroides vulgatus PC510] gi|319640202|ref|ZP_07994928.1| cysteinyl-tRNA synthetase [Bacteroides sp. 3_1_40A] gi|294448679|gb|EFG17228.1| cysteine--tRNA ligase [Bacteroides vulgatus PC510] gi|317388189|gb|EFV69042.1| cysteinyl-tRNA synthetase [Bacteroides sp. 3_1_40A] Length = 493 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 177/494 (35%), Positives = 264/494 (53%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILLRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I ++E T K +++ IR +L HYR +DF+ ++RLTEA L Sbjct: 292 INLDEFFHGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGL 351 Query: 335 SK---WPQTSTSKGIID--PAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDL 381 + QT+ +G+ D +A+ +DLN+ I L AR ++T + + Sbjct: 352 ERITPATQTTGIEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATISAED 411 Query: 382 LPIFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + H+ E+ KE N ++ L+++R+ K ++++D IR Sbjct: 412 LEELKSVFHLFMYEILGLKEEAANNEAREEAYGKVVDMLLEQRMKAKANKDWATSDKIRD 471 Query: 434 QLESKGFILEDYKN 447 +L + GF ++D K+ Sbjct: 472 ELAALGFEVKDTKD 485 >gi|291007003|ref|ZP_06564976.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 453 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 236/456 (51%), Gaps = 57/456 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCG TV HIG+ R + +DVL R L + V VRN+TDIDDKI+ +A Sbjct: 14 IYVCGATVQGVPHIGHVRGGLNYDVLRRWL--VHNGYDVRLVRNVTDIDDKILTKAADA- 70 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 P + + + + F RL CL P+ PRAT HI QMI L+Q +I GHAY Sbjct: 71 -GRPWWE----WATAHERAFESAFDRLGCLPPSALPRATGHITQMIELMQRLIDKGHAYA 125 Query: 148 ANNEIIFDTSSIP-NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A ++ F +S +YG S +++DE + G K++P DF LWK + P EP W + Sbjct: 126 AGGDVYFSVASYAEHYGRLSGQRLDEVQQGESTASG--KRDPRDFTLWKAAKPGEPSWPT 183 Query: 207 PWGR-GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 PWG GRPGWH+ECSAMS++YLG FDIHGGGLDL+FPHHENE+AQS A + A W Sbjct: 184 PWGAAGRPGWHLECSAMSTYYLGSEFDIHGGGLDLVFPHHENELAQSTAAG--DGFARYW 241 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +HN ++ + G KMSKS GN + I +L+ AP IR ++ HYR I+++ Sbjct: 242 MHNAWVTMSGEKMSKSLGNTVAIPAILQRAA-------APEIRYYLVAPHYRSTIEYSEP 294 Query: 326 RLTEA-------EILLSKWPQTS--TSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST 376 L EA + +++ Q + G + +A+ +DL+T AI +H RES Sbjct: 295 ALAEAISAYRRIDSFVNRVRQRTGEVGHGTVPAEFAAAMDDDLSTPQAIAVVHNAIRESN 354 Query: 377 KNHD----------------------LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQ 414 D L P+ A G + H +S + ++Q Sbjct: 355 AALDRGDDRAANEAAASVRTMTDILGLDPLSEQWADTRGADDAAHHA---LSELVGSMLQ 411 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +R + F++AD +R +L++ G +ED PD Sbjct: 412 QRQQARAERDFATADAVRDRLQACGIAVED--TPDG 445 >gi|218884115|ref|YP_002428497.1| cysteinyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n] gi|218765731|gb|ACL11130.1| cysteinyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n] Length = 481 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 185/492 (37%), Positives = 248/492 (50%), Gaps = 74/492 (15%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--R 58 M IKIY+TL R + E Q I+P ++MYVCGPTVYD+ HIG+ + +++D R L R Sbjct: 4 MLPAIKIYDTLSRDLKELQPIEPGIVKMYVCGPTVYDYTHIGHGKTYVIYDAFKRYLSLR 63 Query: 59 YYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 Y+ V +V NITDIDDKII+R++ E S I + T+ ++ +L + Sbjct: 64 GYH----VVHVMNITDIDDKIIKRSQDE------GRDWSEIVDEYTRDYLSALEKL-NVT 112 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT 177 H PR + HI ++I IQ +I G+AY A++ + F+ +YG S R + ++ G Sbjct: 113 IDHHPRVSEHINEIIGFIQGLIDKGYAYIASSGSVYFNVDKYDDYGHLSGR-VSKETWGQ 171 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K+NP DF LWK + P EP WESPWGRGRPGWHIECS MSS YLG FDIHGGG Sbjct: 172 EQEFLSEKRNPYDFALWKAAKPGEPYWESPWGRGRPGWHIECSVMSSRYLGSRFDIHGGG 231 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENE AQS + +IW+H+G + + KMSKS N I + E K+ Sbjct: 232 TDLIFPHHENERAQSEAFFGSKPWVSIWMHSGLVMVGKDKMSKSLKNIIPLKEAF--NKW 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGII 347 G P P +RL L THYR+P+ F+ +RLT A LL + ST Sbjct: 290 G----PMP-LRLWYLSTHYRKPLYFSEEALENSVKLYERLTTAAQLLRRLAHESTGLHYA 344 Query: 348 DPAVL--------------SALYNDLNTVSAIQAL----------------HKLARESTK 377 L +AL +D NT A+ + H L S K Sbjct: 345 REEDLKVFNQLVSLHTRFHNALSDDFNTAEALAVVNEYLTILFRDIQYNPRHLLVSTSIK 404 Query: 378 NHDLLPIFNASAHIL-----GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 LL FN +L G+E + L+ + I L+ R L K + +D IR Sbjct: 405 ---LLREFNTVLGVLDRELEGVEESEALLDSMVEI----LINVRKELRKRGIYDLSDTIR 457 Query: 433 KQLESKGFILED 444 L G L D Sbjct: 458 SDLSKIGIQLMD 469 >gi|326802927|ref|YP_004320745.1| cysteine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651090|gb|AEA01273.1| cysteine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 471 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 252/496 (50%), Gaps = 69/496 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL + EF I+ + MYVCGPTVY++ HIGNAR ++ FDV+ R L Y E Sbjct: 2 LTVYNTLTKAKEEFHPINAGKVNMYVCGPTVYNYIHIGNARSIVAFDVIRRYLEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII+R+++E + + K + +D +L T PR Sbjct: 61 -VNFVSNFTDVDDKIIKRSQEEGITS------RQVADKYIAAYYEDIDKLNVKRATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-- 180 +I +I +Q+++ +AY + ++ + S +YG S + ID+ + G RV Sbjct: 114 VLENIDAIIEFVQDLVDKDYAYVVDGDVYYRARSFSSYGKLSDQSIDDLRSGASERVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K++ DF LWK + EP W+SPWG GRPGWHIECS MS+ YL DIHGGG DL Sbjct: 174 EQGKKEDSVDFALWKAAKAGEPSWDSPWGAGRPGWHIECSVMSTRYLADTLDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 +FPHHENE AQS R KT N W+HNGF+ + +G KMSKS GNF+ ++LL Sbjct: 234 VFPHHENERAQSEA--RTGKTFVNYWLHNGFVTMGDDGEKMSKSLGNFVLAHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIID 348 + ++R + HYR P+ F+ L EA+ L + + + + D Sbjct: 287 --KEVDPTIVRFFLASAHYRAPLKFSHSNLEEAQRNLERLQTAHDNINYRLQDAKESLAD 344 Query: 349 -------------------------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 P L+ +Y L ++ ++++ K +D Sbjct: 345 DEKQLGELQALDEHFIQVMDDDFNVPNALTVIYEALKRINIYMEAPQVSQAVLKAYD--Q 402 Query: 384 IFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + I+GIE + + + ++ L++ER K + +D IR++L +G IL+ Sbjct: 403 QLSQWLAIIGIEFQEASI---LDSEVQALIEERDQARLDKNYDRSDAIRQELLDQGIILD 459 Query: 444 DYKNPDNGQRMTRWKQ 459 D P + TRW++ Sbjct: 460 D--TP----QGTRWRR 469 >gi|61216286|sp|Q7V6K0|SYC_PROMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 499 Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 182/506 (35%), Positives = 253/506 (50%), Gaps = 86/506 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +++ NTL R+ F + ++ +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 3 LRLTNTLTRRTEPFTPLKDGHVSIYCCGVTVYDLCHLGHARSYIAWDVLRRYLIWRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TDIDDKI++RA ++ S+ I+ +N + F +D L L P Sbjct: 61 --TVTFVQNFTDIDDKILKRAAEKECSM------QEISEQNIEAFHQDMDSLGILRPDRM 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 PRAT + + LI + G AY + ++ F YG S R ++EQ+ RV Sbjct: 113 PRATQCLDGIRSLIGELEASGAAYSVDGDVYFAVMKHHGYGKLSGRDLNEQQQNADGRVA 172 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++ DF LWK + EP + SPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 173 DAEEARKQHSFDFALWKGAKSGEPSFPSPWGAGRPGWHIECSAMVREELGETIDIHLGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A ++ A W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 233 DLIFPHHENEIAQSEAATG-KQLARYWLHNGMVNVGGQKMSKSLGNFTTIRALLENG--- 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA------------------EILLSKWPQ 339 +P+ +RL +L HYR+P+DFT + A E L WP+ Sbjct: 289 ----VSPMTLRLFILQAHYRKPLDFTADAINAAATGWKGLNAALGLGNIYSETL--NWPE 342 Query: 340 TS-TSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLAR----------- 373 +G+I A + AL +DLN+ AI L LAR Sbjct: 343 CKPLPQGVIQAAHPSNQEQCNKIRQHFIDALDDDLNSSGAIAVLFDLARPLRALANRLKR 402 Query: 374 ------ESTKNHDLLP---IFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLI 418 + T +LLP + A++LG+E K E N+ I++ + R Sbjct: 403 GDTKAIQETAKLNLLPRWQLLVELANVLGLEAEKAAQPAPERNNRVDENHIQRAIATRKE 462 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 + F+ AD IR +L ++G L D Sbjct: 463 AKAARDFAKADLIRDELRAQGIELID 488 >gi|284043153|ref|YP_003393493.1| cysteinyl-tRNA synthetase [Conexibacter woesei DSM 14684] gi|283947374|gb|ADB50118.1| cysteinyl-tRNA synthetase [Conexibacter woesei DSM 14684] Length = 456 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 145/386 (37%), Positives = 206/386 (53%), Gaps = 27/386 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + I I++T ++ + +P + +Y CGPTVY H+GNARP +VF + R L + Sbjct: 2 RTIAIHDTRSGRLLPLEPREPGKVGIYACGPTVYGRIHVGNARPFVVFSLYKRFLEHEGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+V N+TD++DKI + AR + ++ T +V DT L P H+ Sbjct: 62 D--VTFVANVTDVNDKIYDAARAAGVES------EQLAAEMTAAYVADTDALGLGRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P A I +++ LI +I GHAY ++ FD S P YG S R +D+ G + Sbjct: 114 PLARETIDEIVALIAVLIERGHAYAVEGDVYFDVRSYPAYGELSHRDVDQMDQGEGISGA 173 Query: 183 YHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK E W++PWGRGRPGWHIECSAM+ LG FD+HGGG DL+ Sbjct: 174 SLKRDPLDFALWKAWKDGEDTSWDAPWGRGRPGWHIECSAMAETLLGVGFDVHGGGSDLV 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE AQ+C A R A +W+HNG + LEG KM+KS GN ++E L GR Sbjct: 234 FPHHENEAAQTCAA-RGAPLARLWMHNGMVRLEGEKMAKSVGNIFLLHEALAAH---GRD 289 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDP--------AV 351 + HYR+PI ++ +RL EA + + + G P A Sbjct: 290 ----ALVAYFCGGHYRQPIAYSDERLAEAARSVERIREAGRRLVTGSASPDDLSGLREAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK 377 +AL +D NT A+ A+ RE+ + Sbjct: 346 FAALADDFNTPRAMAAVFDWVREANR 371 >gi|33863429|ref|NP_894989.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313] gi|33640878|emb|CAE21334.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313] Length = 511 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 182/506 (35%), Positives = 253/506 (50%), Gaps = 86/506 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +++ NTL R+ F + ++ +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 15 LRLTNTLTRRTEPFTPLKDGHVSIYCCGVTVYDLCHLGHARSYIAWDVLRRYLIWRGY-- 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TDIDDKI++RA ++ S+ I+ +N + F +D L L P Sbjct: 73 --TVTFVQNFTDIDDKILKRAAEKECSM------QEISEQNIEAFHQDMDSLGILRPDRM 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 PRAT + + LI + G AY + ++ F YG S R ++EQ+ RV Sbjct: 125 PRATQCLDGIRSLIGELEASGAAYSVDGDVYFAVMKHHGYGKLSGRDLNEQQQNADGRVA 184 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++ DF LWK + EP + SPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 185 DAEEARKQHSFDFALWKGAKSGEPSFPSPWGAGRPGWHIECSAMVREELGETIDIHLGGA 244 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A ++ A W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 245 DLIFPHHENEIAQSEAATG-KQLARYWLHNGMVNVGGQKMSKSLGNFTTIRALLENGV-- 301 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA------------------EILLSKWPQ 339 +P+ +RL +L HYR+P+DFT + A E L WP+ Sbjct: 302 -----SPMTLRLFILQAHYRKPLDFTADAINAAATGWKGLNAALGLGNIYSETL--NWPE 354 Query: 340 TS-TSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLAR----------- 373 +G+I A + AL +DLN+ AI L LAR Sbjct: 355 CKPLPQGVIQAAHPSNQEQCNKIRQHFIDALDDDLNSSGAIAVLFDLARPLRALANRLKR 414 Query: 374 ------ESTKNHDLLP---IFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLI 418 + T +LLP + A++LG+E K E N+ I++ + R Sbjct: 415 GDTKAIQETAKLNLLPRWQLLVELANVLGLEAEKAAQPAPERNNRVDENHIQRAIATRKE 474 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 + F+ AD IR +L ++G L D Sbjct: 475 AKAARDFAKADLIRDELRAQGIELID 500 >gi|159040150|ref|YP_001539403.1| cysteinyl-tRNA synthetase [Salinispora arenicola CNS-205] gi|157918985|gb|ABW00413.1| cysteinyl-tRNA synthetase [Salinispora arenicola CNS-205] Length = 471 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 172/478 (35%), Positives = 251/478 (52%), Gaps = 60/478 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + +F + + +Y+CG T+ HIG+ R + +DVL R L + E Sbjct: 3 LRLYDTATRSVRDFVPREAGKVGVYLCGLTLQAPPHIGHLRSGVNYDVLRRWLLAHGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A + +P I N + L L+PT++PR Sbjct: 62 -VRFIRNLTDIDDKILVKAVEG--DLPYWS----IAYANELKLTAAYRALNVLSPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT HIP+M LI +I GHAY A + ++ FD S P YG+ S + + + P+ Sbjct: 115 ATGHIPEMQQLIAKLIDTGHAYPAADGSGDVYFDVLSWPAYGTLSNQSPTDMQPAGDAPD 174 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF LWK P EP W SPWGRGRPGWHIECSAM YLG FDIHGGGL Sbjct: 175 RC-KRDPRDFALWKGVKPGEPADAYWPSPWGRGRPGWHIECSAMCWRYLGAEFDIHGGGL 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A A W+H+G LN+ G KM KS GN + +L G Sbjct: 234 DLTFPHHENELAQSQAAGL--PFARYWVHHGLLNIGGAKMGKSCGNSL---DLAYVDSLG 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEIL---LSKWPQTSTSK------GIID 348 R PV +R HYR ID++ L EA + + + Q +T + G + Sbjct: 289 VR----PVELRYYYAAAHYRSVIDYSEDALREAAVAYRRIEGFVQRATEQIGAGQLGAVP 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARES----TKNHDL-----LPIFNASAHILGIEV--- 396 A +A+ +DLNT +A+ LH+ R+ T D+ L A ILG++ Sbjct: 345 TAFAAAMDDDLNTSAALAVLHEAVRDGNTALTGGDDVTVRTALGQVRAMLDILGVDPLDP 404 Query: 397 ----------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ +++A+E+ Q R + +S+AD +R QL+ G ++ED Sbjct: 405 AWTDGSGADDLRAVVDSLVALALEQRAQAR----SRRDWSAADAVRDQLKHAGVVVED 458 >gi|296138339|ref|YP_003645582.1| cysteinyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162] gi|296026473|gb|ADG77243.1| cysteinyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162] Length = 465 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 244/478 (51%), Gaps = 67/478 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y++L R++ +F + +Y+CG TV HIG+ R + FDVL R L + Sbjct: 3 LRLYDSLTREVRDFVPLVEGKAGIYLCGATVQGVPHIGHIRSGVAFDVLRRWLLATGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + + + ++F + L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILRKAAE--AGRPWWE----WAATHEREFTRAYDALGVLPPSAEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I QM+ ++ +I GHAY + ++ F S+P+YG+ SR+K+D+ + G + Sbjct: 115 ATGFITQMVTYMERMIERGHAYASAGDVYFSVRSLPDYGALSRQKVDDVQQGETLAAG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W SPWG GRPGWH+ECSAM++ YLG FDIH GG+DL+FPH Sbjct: 173 KRDPLDFTLWKAAKPGEPSWPSPWGDGRPGWHLECSAMATSYLGGQFDIHCGGMDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + AN W+HNG++ + G KMSKS GN ++I LL + A Sbjct: 233 HENEIAQAHGAG--DPFANYWLHNGWVTMSGEKMSKSLGNVVSIPNLLTQVR-------A 283 Query: 305 PVIRLAMLMTHYREPIDFT-----------------VQRLTE--AEILLSKWPQTSTSKG 345 +R + HYR +++ VQR E E+ + +W S G Sbjct: 284 VELRYYLGSAHYRSMQEYSAGALAEAATAYGRIESFVQRTVERTGEVPVGQW-----SAG 338 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEV 396 +AL +DL SA+ +H R + L A ILG++ Sbjct: 339 FA-----AALDDDLGVPSALAEVHAAVRAGNAALEAGDLDEARRLAGAVRAMTSILGVDP 393 Query: 397 CKEHL---NKNISIAIEKL-------VQERLILLKMKKFSSADYIRKQLESKGFILED 444 H N A++ L ++ R K ++ AD R +L + G + D Sbjct: 394 LDPHWVTENAGDGAAMDALGVLVQAELERRAAARAEKNWAEADAARDRLHAAGIDVTD 451 >gi|269796450|ref|YP_003315905.1| cysteinyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] gi|269098635|gb|ACZ23071.1| cysteinyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] Length = 477 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 243/479 (50%), Gaps = 59/479 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T R + +F + + +YVCG TV HIG+ R + FDVL R L G Sbjct: 2 SLRLYDTATRDVRDFVPLVEGEVGVYVCGATVQGLPHIGHMRSAVAFDVLARWL-ARTGH 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VT VRN+TDIDDKI+ + S + + + + F L L PT++P Sbjct: 61 R-VTLVRNVTDIDDKILAK------SAAAGEPWWAWAATHERAFTHAYDALGNLPPTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT H+ M+ L++ ++ GHAY+A ++ FD S YGS + +++++ T + Sbjct: 114 RATGHVTDMVALMERLVAAGHAYQAGEGDVYFDVRSWEPYGSLTNQRLEDLTPATEEVDA 173 Query: 183 YHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 KK+P DF LWK + P EP W +P+GRGRPGWH+ECSAM+ YLG FDIHGGGLD Sbjct: 174 GVKKDPRDFALWKAAKPGEPETASWPTPFGRGRPGWHLECSAMAQRYLGDTFDIHGGGLD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENE AQS A A +W+H+ ++ G KMSKS GN + + E+L+ + Sbjct: 234 LRFPHHENEQAQSRAAGY--DFARLWMHSAWVTQGGAKMSKSLGNGLLVTEVLDRTR--- 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTSKG 345 A V+R A+ HYR +++T + + EA+ ++ P Sbjct: 289 ----AAVLRFALAGVHYRSMLEWTAETVAEADTTWDRFVGFVDRATERVGTVPAEEVVAA 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGIEV 396 + ++A+ +DLN +A+ A+H+ + L + + +LG++ Sbjct: 345 ALPAGFVAAMDDDLNVSAALAAVHEHLKAGNTALAGGDDAAARTELVLVRSMLDVLGLDP 404 Query: 397 CK-----------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ ++ +E Q R K F+++D IR +L G ++ED Sbjct: 405 AAWSTSSTSTSSTTALDALVTCELEARAQAR----AAKDFATSDAIRDRLARAGIVVED 459 >gi|284029008|ref|YP_003378939.1| cysteinyl-tRNA synthetase [Kribbella flavida DSM 17836] gi|283808301|gb|ADB30140.1| cysteinyl-tRNA synthetase [Kribbella flavida DSM 17836] Length = 480 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 252/485 (51%), Gaps = 69/485 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGE 63 +++Y+T + +F + P + +Y CG TV H+G+ +VFDVL R L R Y Sbjct: 3 LRLYDTATAAVRDFVPVHPGKVGIYHCGLTVQGAPHVGHIYKEVVFDVLRRWLERSGY-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT----TRLACLAP 119 VT + N+TDI+DKI+ ++ + I + +F ++ L C P Sbjct: 61 -QVTVIANVTDIEDKILAKSAERE----------IPWWAHAYEFERELHWAYDVLGCRPP 109 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAY---EANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 T++PRAT HIP+M+ +IQ +I GHAY + + ++ FD S P YG S +KID+ + Sbjct: 110 TYEPRATGHIPEMLEMIQQLIDGGHAYVAQDGSGDVYFDVKSWPAYGELSNQKIDDMEAA 169 Query: 177 TRVPEKYHKKNPADFILWKRST---PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + K++P DF LWK T P+ W +PWGRGRPGWH+ECSAM+ YLG FDI Sbjct: 170 EDADPR-GKRDPRDFALWKGHTEGVPLTASWPTPWGRGRPGWHLECSAMAGKYLGGEFDI 228 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHENE+AQS +K A W+HN + G KMSKS GN + ++E Sbjct: 229 HGGGLDLRFPHHENELAQSTAVG--QKFARFWMHNALVTAAGEKMSKSLGNGAIVRNVVE 286 Query: 294 TKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKG 345 + P+ +R ++ +HYR ++F+ L EA E +++ + + + Sbjct: 287 RVR--------PIELRFYLVQSHYRSVVEFSFGALDEAATSFQRIEGFVTRATELTGAAD 338 Query: 346 IIDPAV-------LSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASA 389 +DPA ++A+ +DL T +A+ LH R+ K + L + Sbjct: 339 RVDPAAVELPADFVAAMDDDLGTPAAMAVLHTTVRDGNKLLADGDSPALRETLATVRSML 398 Query: 390 HILGIEVCKE----------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + G++ E L + + ++ L+ +R + K ++++D IR +L++ G Sbjct: 399 DVFGLDPLAEPWVSRTGTTDELTEVVDGLVQALLDQRQAARERKDYAASDQIRDRLKALG 458 Query: 440 FILED 444 ++ED Sbjct: 459 VVVED 463 >gi|116669295|ref|YP_830228.1| cysteinyl-tRNA synthetase [Arthrobacter sp. FB24] gi|166200129|sp|A0JSV8|SYC_ARTS2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116609404|gb|ABK02128.1| cysteinyl-tRNA synthetase [Arthrobacter sp. FB24] Length = 487 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 172/495 (34%), Positives = 241/495 (48%), Gaps = 65/495 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T ++ +F + P + +Y CG TV H+G+ R I FD L R L Y G + Sbjct: 1 MRFYDTASAEVRDFVPLIPGKVSLYYCGATVQGLPHVGHIRSAIAFDQLTRWLEYR-GFR 59 Query: 65 CVTYVRNITDIDDKIIERAR-------QEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 VT VRN+TDIDDKI+ ++ +E P + + + Q F+K L Sbjct: 60 -VTVVRNVTDIDDKILAKSALSFEPDFEEGPDDVREEEWWALAYRYEQAFLKAYDTLGVS 118 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQK 174 PT++PRAT HIP+M LIQ +I GHAY A + ++ FD S YGS +R+KID+ + Sbjct: 119 RPTYEPRATGHIPEMHALIQGLIDRGHAYPALDDSGDVYFDVRSWNRYGSLTRQKIDDMQ 178 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 G + KK+P DF LWK EP W SPWG GRPGWH+ECSAM + YLG F Sbjct: 179 -GAPDADPRGKKDPRDFALWKGHKEGEPTTASWVSPWGTGRPGWHLECSAMVTKYLGTEF 237 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGGLDL FPHHENE+AQS A AN W+HNG + +G KMSKS GN ++ E+ Sbjct: 238 DIHGGGLDLRFPHHENEMAQSQAAG--HAFANFWMHNGMVTYQGEKMSKSIGNTVSPAEM 295 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----QTSTSKGI 346 LE V+R + YR +D+ L EA + + T G Sbjct: 296 LELAS-------PRVVRYYLGQAQYRSVLDYQPTSLQEAAAAVERIDGFIARAVRTLSGS 348 Query: 347 IDPAVLSALYND---------------LNTVSAIQALHKLARESTKNHDLLPIFNASA-- 389 + L++ LN A+ ALH R N L N++A Sbjct: 349 VVSGAAELLFSSHGTVPDAFAAAMDDDLNVPQALAALHDTVR--AGNTALTAGDNSAART 406 Query: 390 ---------HILGIE-----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 +LG+ E + + + +E + R K ++++D IR L Sbjct: 407 ALHSVTDMLRVLGLNDVAAPARDEQADTALGVLVEAQLGARAQARATKDWAASDAIRDTL 466 Query: 436 ESKGFILEDYKNPDN 450 + G ++ED PD Sbjct: 467 AAAGVVVED--GPDG 479 >gi|116073130|ref|ZP_01470392.1| cysteinyl-tRNA synthetase [Synechococcus sp. RS9916] gi|116068435|gb|EAU74187.1| cysteinyl-tRNA synthetase [Synechococcus sp. RS9916] Length = 496 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 159/406 (39%), Positives = 215/406 (52%), Gaps = 55/406 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 ++ N+L + F+ ++ +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 3 LRFTNSLTSRTEAFEPLEAGKATIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWRGYD- 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+N TDIDDKI+ RA +E S+ ++ +N + F D RL L Sbjct: 62 ---VTYVQNYTDIDDKILNRANEEGSSM------EAVSERNIEAFEIDMGRLNILPADRM 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TR 178 PRAT I + LI + G AY ++ ++ FD S +YG S R +EQ+ G T Sbjct: 113 PRATGCIDGIQKLISELEAKGAAYSSDGDVYFDISKAKDYGKLSGRDPNEQQQGASGRTA 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK EP W+SPWG GRPGWHIECSAM LG DIH GG Sbjct: 173 DGEESRKRHPFDFALWKGVKEGEPSWDSPWGPGRPGWHIECSAMVRQELGTTIDIHLGGG 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A+ AN+W+HNG +N+ G KMSKS GNF TI LL+ Sbjct: 233 DLTFPHHENEIAQSETANGT-TLANLWMHNGMVNVGGTKMSKSLGNFTTIRALLD----- 286 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLT---------EAEILLSK-------WPQTS 341 S +P+ +RL +L HYR+P+DFT + L A + L + WP + Sbjct: 287 --SGVSPMTMRLFVLQAHYRKPLDFTAEALEAATTGWKGLNAALGLGRVHAQSLGWPVAA 344 Query: 342 TSK--------------GIIDPAVLSALYNDLNTVSAIQALHKLAR 373 ++ ++A+ +DLN+ A+ L LAR Sbjct: 345 VQDQGAQLAGDAVDGDLAVMKERFVAAMDDDLNSSGALAVLFDLAR 390 >gi|330996564|ref|ZP_08320446.1| cysteine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329573120|gb|EGG54739.1| cysteine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 494 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 174/495 (35%), Positives = 259/495 (52%), Gaps = 57/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ IYNTL RK EF+ I P + MYVCGPTVY AH+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLFIYNTLSRKKEEFKPITPGRVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLQHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + T +F Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEELE-PME-----VAQYYTNRFHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSR 167 L L P+ +P AT HI + I L++ I+ +G+AY + + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHATGHIIEQIELVKEILDNGYAYVSEGSVYFDVEKYNKTHHYGKLSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +++ +R + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLEDVINNSRALDGVGEKHNQVDFALWKCAQPQHIMRWPSPWSNGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DLIFPHHE EIAQ+ A + N W+HN + + G+KM KS GNF Sbjct: 233 YLGDHFDIHGGGMDLIFPHHECEIAQA-VASQGSDMVNYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + + +P+ IR +L HYR +DF+ + L +E LS+ + Sbjct: 292 ITLAQFFSGEHESLTQAYSPMTIRFFILQAHYRSTVDFSNEALQASEKGLSRLMEGVANL 351 Query: 340 ---TSTSKGIIDPAVLS--------ALYNDLNTVSAIQALHK--------LARESTKNHD 380 T T+ G + A + A+ +DLN+ I L + R++T + D Sbjct: 352 KRITPTAGGSVGMAYVDELRRKCYEAMDDDLNSPIVISHLFDACRVINTVVDRKATMSAD 411 Query: 381 LLPIFNASAHILGIEV--CKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIR 432 +L H ++ KE + ++ L+++R+I K ++++D IR Sbjct: 412 VLAALAEVFHTFAFDILGLKEETGGGSGREEAFGKVVDMLLEQRMIAKANKDWATSDKIR 471 Query: 433 KQLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 DNLAALGFEVKDTKD 486 >gi|154249366|ref|YP_001410191.1| cysteinyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1] gi|171769335|sp|A7HKV1|SYC_FERNB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154153302|gb|ABS60534.1| cysteinyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1] Length = 470 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 239/465 (51%), Gaps = 50/465 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ I +TL + + ++P ++MYVCGPTVY++ HIGNARPM+VFD L R L + G Sbjct: 3 KVYITDTLSKSKVPLETLEPGVVKMYVCGPTVYNYIHIGNARPMVVFDALRRFLEFV-GY 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + + V+N TDIDDKII A++ N + ++ D L A + P Sbjct: 62 RVIM-VQNFTDIDDKIINEAKE------WNVDWKTVADTFIAEYFHDAQLLGVRAANYHP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R T+ + ++ I+ +I AY A N ++ F + +YG S + +D+ + G RV Sbjct: 115 RTTDFVKDIVEAIETMIKKDFAYPAENGDVYFSVRKLRDYGKLSGKNLDDLRAGARVDVN 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF+LWK + P EP W+SPW GRPGWHIECS MS LG +FDIHGGG DLIF Sbjct: 175 ELKKDPLDFVLWKSAKPGEPTWDSPWCNGRPGWHIECSVMSQKLLGDMFDIHGGGEDLIF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS + A W+HNG + + G KMSKS GN + E + R + Sbjct: 235 PHHEDEIAQSEALTG-KPPAKYWMHNGMIIVRGDKMSKSLGNTFMVREAV-------RRY 286 Query: 303 PAPVIRLAMLMTHYREPIDFT----------VQRLTEA-EILLSKWPQTSTSK------G 345 ++L +L HYR P++F+ QR+ A K+P K Sbjct: 287 TKDGVKLFLLSKHYRSPMEFSDEILQDNMRAAQRVHNALNRFTEKYPYPLVPKIDEEMEN 346 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILG--IEVC 397 ID V AL +D NT A+ L +E K+ D L +++ I G + V Sbjct: 347 FIDRFV-EALSDDFNTPVALSILFDTVKELNKSMDEGNDERALKMYHLVKRIYGPVLGVF 405 Query: 398 KEHLNKNISIAIEKLVQ--ERLILL-----KMKKFSSADYIRKQL 435 + K + E+L Q + +I L K K+F AD +R L Sbjct: 406 DSEIQKQQQVNSEQLDQLIQGIINLRNEYRKNKQFEIADKLRDAL 450 >gi|296111414|ref|YP_003621796.1| cysteine--tRNA ligase [Leuconostoc kimchii IMSNU 11154] gi|295832946|gb|ADG40827.1| cysteine--tRNA ligase [Leuconostoc kimchii IMSNU 11154] Length = 483 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 174/491 (35%), Positives = 261/491 (53%), Gaps = 63/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I P I MYVCGPT+Y++ HIGNAR I FDV+ R Y + Sbjct: 16 IHVYNTLTREKEIFKPITPGKINMYVCGPTIYNYIHIGNARSAIAFDVVRRYFEYRGYD- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RAR++ D ++I ++ F +DT L T + R Sbjct: 75 -VNYVSNFTDVDDKIIKRAREQGV-----DEMTI-ANRYADAFHQDTLPLNIKPATVRSR 127 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP-- 180 AT+ IP +I + ++I G+AYE+ ++ F YG + + + E + R+ Sbjct: 128 ATDVIPDIILFVGDLIKKGYAYESEGDVYFRAKRFKGYGILAHQDLAEMEANAAGRLDDI 187 Query: 181 EKYHKKNPADFILWKRS-TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF +WK S + E W+SPWG+GRPGWHIECS M+ YL DIHGGG+D Sbjct: 188 ELTRKEDPIDFAVWKASHSKDEISWQSPWGKGRPGWHIECSVMAQKYLADTIDIHGGGID 247 Query: 240 LIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 L FPHH NEIAQS R KT N W+HNGF+N+ KMSKS GNF T++++L Sbjct: 248 LAFPHHTNEIAQSEA--RTGKTFVNYWMHNGFVNVNDEKMSKSLGNFTTVHDMLA----- 300 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIIDP 349 ++ P+ IR + T YR I+++ L +A + L + + T+ D Sbjct: 301 --NYDDPMAIRYLLSTTQYRRSINYSDDTLEQARVALDRIRTAYRNLSFRMETAVNGRDQ 358 Query: 350 AV-----------LSALYNDLNTVSAIQALHKLAR-------------ESTKNHDLLPIF 385 AV +A+ +D NT +A+ ++ +L E+T++ LL Sbjct: 359 AVDRVIEERISDFEAAMDDDFNTPNALASIFELVTIANTLAESQQIYLETTQH--LLHTI 416 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + GIE + N++ ++L++ R + + + F ++D +R+ L G ++ED Sbjct: 417 AKLMSVFGIENLS--VASNLTKEQDELLKLRHLARETRDFEASDRLRQNLHQLGIVVED- 473 Query: 446 KNPDNGQRMTR 456 P GQR R Sbjct: 474 -TP-QGQRWHR 482 >gi|325299474|ref|YP_004259391.1| cysteinyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] gi|324319027|gb|ADY36918.1| cysteinyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] Length = 492 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 178/495 (35%), Positives = 260/495 (52%), Gaps = 59/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MENKLIIYNTLSRRKEPFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLQHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----VVQYYLLRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIKLVEEILKNGYAYESQGSVYFDVAKYNKDHHYGVLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVINTTRELDGQQEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ ++ W+HN + + G+KM KS GNF Sbjct: 233 YLGETFDIHGGGMDLIFPHHECEIAQAVASEG-HPMVRYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------- 337 IT+ E + K +++ IR +L HYR +DF+ + L AE L + Sbjct: 292 ITLEEFFTGSNKLLAQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLLEGIKNL 351 Query: 338 ----PQTSTSKGIIDPAVL-----SALYNDLNTVSAIQALHKLAR------------EST 376 P STS I+PA L A+ +DLNT I L R + Sbjct: 352 ERITPSASTSG--IEPAGLREKCYEAMNDDLNTPIVISHLFDGIRMINTVLDKKATISAA 409 Query: 377 KNHDLLPIFNASA-HILGIEVCKEH---LNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 +L +F+ A ILG++ E+ + S ++ L++ER+ K ++++D IR Sbjct: 410 DLEELKSVFHLFAFDILGLKAEGENNAAREEAFSKVVDMLLEERMKAKANKDWATSDKIR 469 Query: 433 KQLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 470 DSLAALGFEVKDTKD 484 >gi|189465034|ref|ZP_03013819.1| hypothetical protein BACINT_01378 [Bacteroides intestinalis DSM 17393] gi|189437308|gb|EDV06293.1| hypothetical protein BACINT_01378 [Bacteroides intestinalis DSM 17393] Length = 491 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 177/503 (35%), Positives = 259/503 (51%), Gaps = 60/503 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AY + + FD +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVKEILKNGYAYVSEGSVYFDVEKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQAEKHNPADFALWKCAQPEHIMRWPSPWSNGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGNDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 I ++E T K +++ IR +L HYR +DF+ + L AE L + Sbjct: 292 INLDEFFNGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLGRMMDAVNGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLP 383 I P+ S A+ +DLNT I L AR T + L Sbjct: 352 EKITPSATSSVDVKAVREKCYEAMNDDLNTPIVIAHLFDGARMINNIIAGNDTITAEDLK 411 Query: 384 IFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H+ ++ KE + N ++ L+++R++ K ++++D IR +L Sbjct: 412 DLKETFHLFCFDILGLKEENDSNEEREVAFGKVVDMLLEQRMMAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + GF ++D G+ + WK Sbjct: 472 TALGFEIKD------GKEGSEWK 488 >gi|237752694|ref|ZP_04583174.1| cysteinyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430] gi|229376183|gb|EEO26274.1| cysteinyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430] Length = 467 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 172/477 (36%), Positives = 261/477 (54%), Gaps = 51/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY++ +++ F+ I P+ +R+YVCGPTVYD +H+G+AR IVFD+L R+L G K Sbjct: 1 MKIYDSHKKEKVPFEPIIPNEVRLYVCGPTVYDDSHLGHARSAIVFDLLRRVL-IENGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +N TDIDDKII +A Q + S I IT T++++ + L + +P+ Sbjct: 60 -VIFAKNFTDIDDKIINKATQNNCS------IEEITQTYTKRYLDEMQALGVMRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ M +IQN++ AY+ N ++ S YG+ S R I E + +RV Sbjct: 113 ATENLEAMFAMIQNLLDKKIAYQTPNGDVYLSVSKDREYGNLSGR-IAELESQSRVQNSE 171 Query: 184 HKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLG----KVFDIHGGGL 238 K + DF LWK + + G++SP+G+GRPGWHIECSAM +L DIHGGG Sbjct: 172 QKHDSKDFALWKSYKGIGDVGYDSPFGKGRPGWHIECSAMIKEHLALKGDYAIDIHGGGT 231 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE Q+ CAD + A WIHNGF+ + G KM+KS GN I + L Sbjct: 232 DLLFPHHENEACQTRCADN-QVLAKYWIHNGFVTINGEKMAKSLGNSFFIKDALA----- 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT-------------VQRLTEAEILLSKWPQTSTSKG 345 ++ ++R +L THYR ++F+ + RL + +L K ++ Sbjct: 286 --NYDGEILRFYLLSTHYRAGLNFSEEDLLASKKRLDRLYRLKKRLAILPKKTIPTSLDN 343 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKL---ARE--STKNHDLLPIFNAS----AHILGIEV 396 A L AL +DLN A+ L A E +K +D +P A+ A +LGI + Sbjct: 344 AFKTAFLDALNDDLNISKALSVLDDFIANANEQLDSKQNDKIPQIYANLELVAKVLGIGI 403 Query: 397 --CKEH----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 C E+ +++++ IE L+++R K+K F +AD IR++L +KG + D N Sbjct: 404 KDCFEYFKLGVSEDLKTEIENLLKKRAEFKKIKDFQNADKIREELRNKGIEIMDTPN 460 >gi|226304178|ref|YP_002764136.1| cysteinyl-tRNA synthetase [Rhodococcus erythropolis PR4] gi|229494513|ref|ZP_04388276.1| cysteinyl-tRNA synthetase [Rhodococcus erythropolis SK121] gi|226183293|dbj|BAH31397.1| cysteinyl-tRNA synthetase [Rhodococcus erythropolis PR4] gi|229318875|gb|EEN84733.1| cysteinyl-tRNA synthetase [Rhodococcus erythropolis SK121] Length = 464 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 159/474 (33%), Positives = 239/474 (50%), Gaps = 49/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + +F + P + +Y+CG TV HIG+ R + FDVL R L + + Sbjct: 3 LRLYDTGTRALRDFVPLAPGHASVYLCGATVQGDPHIGHVRSGVAFDVLRRWLLAHGND- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A P + + T + +L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILNKAAG--AGRPWWEWAATFERSFTWAY----DQLGVLPPSIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ QM+ +++ +I +GHAY A ++ FD S P YG+ S K+D+ G E Sbjct: 115 ATGHVTQMVEMMERLIENGHAYAAGGDVYFDVQSYPEYGALSGHKLDDVHQGESAAEG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK P EP W +PWG GRPGWH+ECSAM+ YLG FDIH GG DL+FPH Sbjct: 173 KRDPRDFTLWKAVKPGEPSWPTPWGPGRPGWHLECSAMAEFYLGAAFDIHCGGRDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA + A W+HNG++ + G KMSKS GN +++ +L+ + Sbjct: 233 HENEIAQAKCAG--DDFAQYWLHNGWVTMSGEKMSKSLGNVLSVPNVLKKVR-------P 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSKWPQTSTSKGIIDPAVLSAL 355 +R + HYR ++++ + L E+ +L + G +AL Sbjct: 284 QELRYYLGSAHYRSNLEYSDEALDESAKSYQGLESFVLRTHKRAGGVELGTWTEGFAAAL 343 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPI---------FNASAHILGIEVCKEHLNK--- 403 NDL+ A+ +H A E + A ILG++ EH + Sbjct: 344 DNDLSVPIALAEIHGKASEGNSALAAGDLDAARVAAGQVRAMLAILGVDPLDEHWTQSGG 403 Query: 404 NISIAIEKL-------VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 + A+E L + R K ++ AD +R +L G + D PD Sbjct: 404 DTETAMEALDVLVRADLDRRQQARTEKNWAVADEVRDRLIKAGIEVTD--TPDG 455 >gi|110639787|ref|YP_679997.1| cysteinyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406] gi|123058501|sp|Q11PK9|SYC_CYTH3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110282468|gb|ABG60654.1| cysteinyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406] Length = 497 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 144/345 (41%), Positives = 204/345 (59%), Gaps = 26/345 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+ +YNTL RK F+ I ++ MYVCGPTVY H+G+AR I FD+++R L++ Sbjct: 4 EKLVVYNTLTRKKEVFEPIHAPHVGMYVCGPTVYGEGHLGHARSAITFDIVFRYLQHL-- 61 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 + V YVRNITD+ +DKI ++A+ E P+ I + T+ + Sbjct: 62 KYQVRYVRNITDVGHLEHDADEGEDKIAKKAKLEKVE-PME-----IVQRYTEYYHDALR 115 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----YGSFSRR 168 +L L P+ +P A+ HIP+ I +++ I+ G+AYE + FD N YG S R Sbjct: 116 KLNVLPPSIEPTASGHIPEQIRMVEEILSSGYAYENTGSVYFDVEKFTNDKNKYGHLSGR 175 Query: 169 KIDEQKMGTRVPEKYH-KKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 +++ GTR + H KK+ ADF LWK ++P W+SPWG+G PGWH+ECSAMS+ Y Sbjct: 176 ILEDLISGTRSLDGQHTKKSSADFALWKLASPEHIMKWDSPWGKGFPGWHLECSAMSTKY 235 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL+FPHHE EIAQS A++ E A W+HN + + G+KM KS GNFI Sbjct: 236 LGETFDIHGGGMDLMFPHHECEIAQSVAANKKE-PAKYWLHNNMITINGQKMGKSLGNFI 294 Query: 287 TINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 T+NEL +++ IR L HYR +DF+ L A Sbjct: 295 TLNELFTGNHTLLEQAYSPMTIRFFTLQAHYRSTLDFSNDALKAA 339 >gi|305663603|ref|YP_003859891.1| cysteinyl-tRNA synthetase [Ignisphaera aggregans DSM 17230] gi|304378172|gb|ADM28011.1| cysteinyl-tRNA synthetase [Ignisphaera aggregans DSM 17230] Length = 476 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 173/485 (35%), Positives = 252/485 (51%), Gaps = 61/485 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL R+I F+ I+P ++ Y CGPTVYD+ H+G+ R + FD + R L+ + Sbjct: 3 ITIYNTLSRRIEPFEPINPPLVKAYFCGPTVYDYTHLGHIRAYLAFDFIKRYLKLRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +++NITDIDDKII+RA +E S +T K + +++ L H PR Sbjct: 62 -IIHIQNITDIDDKIIKRANEEGVSW------KELTDKYIRDYLQILNALKIEIHLH-PR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HI ++I I+ +I G+AY A + + FD S + +YG S RK E+ R E++ Sbjct: 114 VTEHINEIIEFIKGLIDKGYAYVAPSGSVYFDISLVNDYGKLSGRKKAEE---WRQEEEF 170 Query: 184 --HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P EP WESPWGRGRPGWH EC+ MSS YLG FD+HGGG DLI Sbjct: 171 LSEKRNPYDFALWKASKPGEPFWESPWGRGRPGWHTECAVMSSKYLGTQFDVHGGGQDLI 230 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIA + ++ WIH G+L + G KMSKS GN I + + Sbjct: 231 FPHHENEIAMAEALYGVKPWVKYWIHVGYLTIRGEKMSKSLGNVIYAKDAI-------NK 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLSKWPQTSTSK------- 344 + ++RL +HYR+ ++ + + RL A L K + K Sbjct: 284 YSPEILRLWAFSSHYRKQVEVSDEVLNSYRDVYSRLVLAVETLKKIIKQENIKYSLKEDE 343 Query: 345 -------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG---- 393 +I+ A+ +D NT A +A+H+L K + F + Sbjct: 344 INILKKLEMIEIEFHKAMSDDFNTPKAFEAVHELTSLVFKEIERYETFELALRAYEILLN 403 Query: 394 ----IEVCKEHLNKNISI---AIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFIL 442 I V ++ ++I++ IEKL++ R L K K++ +D IR++L G + Sbjct: 404 FNKVIGVLDKYFEESITVDIEMIEKLIELILKVRTELRKRKEYELSDKIRQELLMLGIKV 463 Query: 443 EDYKN 447 DYK+ Sbjct: 464 FDYKD 468 >gi|72160616|ref|YP_288273.1| cysteinyl-tRNA synthetase [Thermobifida fusca YX] gi|109894957|sp|Q47TG4|SYC_THEFY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71914348|gb|AAZ54250.1| cysteinyl-tRNA synthetase [Thermobifida fusca YX] Length = 466 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 163/471 (34%), Positives = 243/471 (51%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T R++ +F + + +Y+CG TV HIG+ R + FD+L R L Y G + Sbjct: 3 LRFYDTRTRQVRDFVPLREGCVSLYLCGATVQAPPHIGHIRSGVSFDILRRWL-MYRGYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RN+TDIDDKI+ A E ++ +N + F + L CL PT +PR Sbjct: 62 -VIFCRNVTDIDDKILNVAASE------GVQWWEVSERNYRAFAEAYDTLGCLPPTVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY---EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT HIP+MI L++ +I GHAY + + ++ FD +S YGS S ++++E + + Sbjct: 115 ATGHIPEMIELMRRLIDRGHAYVAEDGSGDVYFDVTSYAEYGSLSNQRLEEMR-AAEDGD 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P EP W +PWG GRPGWH+ECSAM++ YLG FDIHGGG+DL+ Sbjct: 174 ARAKRDPRDFALWKGARPGEPSWPTPWGPGRPGWHLECSAMATKYLGPTFDIHGGGVDLV 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE AQS A + A W+HNG L G KMSKS GN + I E+ + Sbjct: 234 FPHHENESAQSRAAG--DGFARYWLHNGLLTTGGEKMSKSLGNSLLIPEITRRVR----- 286 Query: 302 WPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----QTSTSKGIIDPAV----- 351 PV +R + HYR +D++ + L EA + + + G I V Sbjct: 287 ---PVELRYYLGQAHYRSNLDYSEESLREAASAYQRLENFLVRVNEIAGPIPDDVPVPEE 343 Query: 352 -LSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKEH- 400 +AL +DL A+ H RE + + A +LG++ Sbjct: 344 FAAALDDDLGVPQALAVAHNHVREGNSALAEGAKERAAQIGARLRAMLAVLGLDPLSPQW 403 Query: 401 -------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L+ + + ++++R K K +++AD IR QL G +ED Sbjct: 404 AGSDDSGLHDVVDSLVSVVLEQRQEARKRKDYATADRIRDQLAEMGIAVED 454 >gi|257457848|ref|ZP_05623007.1| cysteinyl-tRNA synthetase [Treponema vincentii ATCC 35580] gi|257444561|gb|EEV19645.1| cysteinyl-tRNA synthetase [Treponema vincentii ATCC 35580] Length = 487 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 181/489 (37%), Positives = 252/489 (51%), Gaps = 63/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL KI +F +DP + Y CGPTVY++AHIGN R + D L RLLR+ Sbjct: 3 LRIYNTLGHKIEDFVPVDPGKVGFYGCGPTVYNYAHIGNLRAYVFQDTLSRLLRFL--GY 60 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT+V NITDI +DK+++ A++ S+ I T+ F KDT RL Sbjct: 61 PVTHVMNITDIGHLSGDADDGEDKMVKTAKERGQSVLE------IADFYTKAFFKDTERL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P +AT+H+ MI LI+ I +GH Y A + +D + P YG + K+++ K Sbjct: 115 NIRRPDVVCKATDHVQDMIELIKRIEANGHTYSAGGNLYYDIMTFPKYGELASIKLEDLK 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G R+ +K+NP DF+LW + E W+SPWGRG PGWHIECSAMS YLG+ F Sbjct: 175 AGARIEVDENKRNPHDFVLWFTKSKFENQALVWDSPWGRGYPGWHIECSAMSMKYLGEQF 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG+D I HH NEIAQS A +K W+HN FL + KMSKS G+FIT++++ Sbjct: 235 DIHTGGIDHIRIHHTNEIAQSEGATG-KKWVKYWLHNEFLVMNKGKMSKSTGDFITLDKV 293 Query: 292 LETKK---------FGGR-------SWPAPVI----------RLAMLMTHYREPIDFTVQ 325 +E GG SW A R+A L+ + DF Sbjct: 294 IEAGYAPLDYRFLLLGGHYRTQLTFSWEAMETAKNARKNLEQRIANLLAEAKTLPDFPSG 353 Query: 326 RLT--EAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR----ESTKNH 379 +T +AE LL T ++ + V AL D++T A+ L + + E+ + Sbjct: 354 NVTAEQAEQLL----HTEKARCYLADFV-QALEEDISTPRALSVLQQAVKDKELEAAEAI 408 Query: 380 DLLPIFNASAHILGIEVCKEHLNKNISI----AIEKLVQERLILLKMKKFSSADYIRKQL 435 L+ IF+A + IE + S+ IE+LV ER K K F AD IR L Sbjct: 409 TLIRIFDAVLALRLIEEAEALHTGGESVDNAEEIERLVAERTEAKKNKDFKRADEIRNIL 468 Query: 436 ESKGFILED 444 +++G LED Sbjct: 469 KNRGIALED 477 >gi|332881450|ref|ZP_08449099.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680448|gb|EGJ53396.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 494 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 172/495 (34%), Positives = 258/495 (52%), Gaps = 57/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ IYNTL RK EF+ + P + MYVCGPTVY AH+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLFIYNTLSRKKEEFKPVTPGRVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLQHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + T +F Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEELE-PME-----VAQYYTNRFHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSR 167 L L P+ +P AT HI + I L++ I+ +G+AY + + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHATGHIIEQIELVKEILDNGYAYVSEGSVYFDVEKYNKAHHYGKLSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +++ +R + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLEDVINNSRALDGVGEKHNQVDFALWKCAQPQHIMRWPSPWSNGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DLIFPHHE EIAQ+ A + N W+HN + + G+KM KS GNF Sbjct: 233 YLGDHFDIHGGGMDLIFPHHECEIAQA-VASQGSDMVNYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + + +P+ IR +L HYR +DF+ + L +E L++ + Sbjct: 292 ITLAQFFSGEHESLTQAYSPMTIRFFILQAHYRSTVDFSNEALQASEKGLARLMEGIANL 351 Query: 340 ---TSTSKGIIDPAVLS--------ALYNDLNTVSAIQALHKLAR--------ESTKNHD 380 T T+ G ++ A + A+ +DLN+ I L R ++T D Sbjct: 352 KRITPTAGGSVEMAYVDELRRKCYEAMNDDLNSPIVISHLFDACRVINTVVDQKATMAGD 411 Query: 381 LLPIFNASAHILGIEV--CKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIR 432 +L H ++ KE + ++ L+++R+I K ++++D IR Sbjct: 412 VLAALTEVFHTFAFDILGLKEETGGGSGREEAFGKVVDMLLEQRMIAKANKDWATSDKIR 471 Query: 433 KQLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 DNLAALGFEVKDTKD 486 >gi|297566117|ref|YP_003685089.1| cysteinyl-tRNA synthetase [Meiothermus silvanus DSM 9946] gi|296850566|gb|ADH63581.1| cysteinyl-tRNA synthetase [Meiothermus silvanus DSM 9946] Length = 481 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 238/487 (48%), Gaps = 62/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F P + MYVCGPTVY H+G+AR +VFDVL R L + + Sbjct: 3 LQLYNTLTRQKEPFVPATPGYVGMYVCGPTVYGDPHLGHARGPVVFDVLRRWLLHQGLQ- 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD+ +DKI +RA+ E P+ + K T + L Sbjct: 62 -VRYVRNITDVGHLTDDADEGEDKIQKRAKLERLE-PME-----VAEKYTWAYFDAMDDL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P+ PRA HIP+ I L Q +I GHAYE N + F SS P YG S R +EQ+ Sbjct: 115 NVLRPSISPRAAGHIPEQIELTQALIEKGHAYEKNGSVYFRVSSWPEYGKLSGRNFEEQE 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G RV + K++P DF LWK + P W SPWG+G PGWHIECSAMS YLG+ FDI Sbjct: 175 AGARVAVREEKEDPRDFALWKAADPEHIMRWNSPWGQGFPGWHIECSAMSLKYLGEGFDI 234 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL FPHHE EIAQ+ A A W+H+ + L G KM+KS GN + + +LL Sbjct: 235 HGGGIDLQFPHHECEIAQAEAAG--HAFARYWVHHNHVLLNGEKMAKSTGNLVILRDLLN 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTSKGIIDP 349 + V+R +L +HYR +DFT L A LL + + P Sbjct: 293 QNE-------PMVVRFYLLQSHYRSVLDFTSAGLEAARNGYLRLLGAYREVRRQLHAAKP 345 Query: 350 AVLSALYNDLNTVSA--IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +AL L+T+ A QAL+ A L + K+ L + + Sbjct: 346 GKHAALEKALDTLEADFSQALNDDLNTPQAIAAFFVFLPALNKALADKAGKDSLERAEKV 405 Query: 408 AIE------KLVQERLILLKM----------------------KKFSSADYIRKQLESKG 439 E L R++ ++ K F+ +D+IR +L G Sbjct: 406 FAELGEGVLGLFPARVLEARLGGALLDGLIQLLLDLRERARQEKNFALSDWIRHRLSELG 465 Query: 440 FILEDYK 446 ++ED K Sbjct: 466 VVVEDTK 472 >gi|42523767|ref|NP_969147.1| hypothetical protein Bd2317 [Bdellovibrio bacteriovorus HD100] gi|61216207|sp|Q6MKR7|SYC_BDEBA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|39575974|emb|CAE80140.1| cysS [Bdellovibrio bacteriovorus HD100] Length = 482 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 161/489 (32%), Positives = 245/489 (50%), Gaps = 68/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+ +++ +F + P ++MYVCGPTVY+F H+GN R +VF+++ L + G K Sbjct: 2 LKIHNSQSKQLEDFTPLTPGQVKMYVCGPTVYNFLHVGNFRGPVVFNMVRNWLEHL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY N TD+DDKII RA + + + + ++ K ++ KD L P+ Sbjct: 61 -VTYALNFTDVDDKIINRANE------LGMSPTELSEKYIAEYKKDFASLGLRPHDMNPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ + ++++++ AYEA ++++ S +YG S R D+ G RV Sbjct: 114 VTEHMDDIRSMVESLVSQKKAYEAQGDVLYSIESFKDYGKLSGRNTDDLLAGARVEVDEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P E W SPWG GRPGWHIECSAM + G DIHGGG+DLIFPH Sbjct: 174 KRNPMDFALWKAAKPGEVSWPSPWGPGRPGWHIECSAMIKNLFGDQIDIHGGGMDLIFPH 233 Query: 245 HENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HENEIAQS C K W+HN LN G+KMSKS GN +T+ E LE + Sbjct: 234 HENEIAQSEGCTGKAFVK---YWMHNNMLNFGGQKMSKSLGNIVTMREFLEM-------Y 283 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAVL--------- 352 A + + +L HYR DF + + A LS+ + S ++ + P V Sbjct: 284 NAEIYKWMILSAHYRTLSDFGDEAVERAVGGLSRVYSALSMAESYLTPEVTQEDAAFAKI 343 Query: 353 ---------SALYNDLNTVSAIQALHKLAREST-------------------------KN 378 A+ +D T A A+ ++ R+ K Sbjct: 344 TQDAWKKVEEAMNHDFGTPDAFAAMFEVVRQFNAQVRRGMKANPAIQGKALAFHNFVRKM 403 Query: 379 HDLLPIFNASAHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQL 435 ++ +F AH I++ + L K +++ A++ LV ER K F+ +D +R ++ Sbjct: 404 GSMMSLFQEPAHAFLIKL-DDMLLKKMNLERSAVDALVAERGEARAAKDFAKSDELRAKI 462 Query: 436 ESKGFILED 444 + G + D Sbjct: 463 TALGISVSD 471 >gi|255534556|ref|YP_003094927.1| cysteinyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10] gi|255340752|gb|ACU06865.1| Cysteinyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 177/488 (36%), Positives = 253/488 (51%), Gaps = 54/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L F I +N+ MYVCGPTVY H+GN R + FD +YR L + G K Sbjct: 3 LKIYNSLSGDKEIFTPIHENNVGMYVCGPTVYSNVHLGNVRTFMSFDFVYRALTHL-GYK 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 62 -VRYVRNITDAGHLTDDGDVDNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKVLDVF 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT----SSIPNYGSFSRRKI 170 L PT +P AT HI + I L Q ++ G AYE+N + FD S NYG SRR I Sbjct: 115 NLLPPTIEPTATGHIVEQIELTQKLVDKGFAYESNGSVYFDVQEYNSRGLNYGELSRRNI 174 Query: 171 DEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 +E TR + + KKNP DF LWK ++P W SPWG G PGWH+EC+AMS+ YLG Sbjct: 175 EELFANTRDLDGQNEKKNPQDFALWKAASPAHIMRWNSPWGEGFPGWHLECTAMSTKYLG 234 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGG+DL FPHHE E+AQ + E N W+H L + G++MSKS GN+I Sbjct: 235 EKFDIHGGGMDLKFPHHECEVAQGKACNGTEP-VNYWLHANMLTMNGQRMSKSTGNYILP 293 Query: 289 NELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 EL+ + F +++ V+R L HYR +D + QRL +A +LS Sbjct: 294 MELVSGSNSFFEKAFHPAVVRFNFLQAHYRSVLDISNEAMLASEKGFQRLMDAMKILSDV 353 Query: 338 PQTSTSKGIID-----PAVLSALYNDLNT-------VSAIQALHKL--ARE---STKNHD 380 + S D AL +D N+ A+ + +L +E ST + Sbjct: 354 QLKTASNSTFDVEAWKKKCYDALTDDFNSPILISHLFEAVNFIFRLKDGKETVTSTDLEN 413 Query: 381 LLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 L + N +LG++ +E+ ++ + A++ L++ R K K F +D IR +L ++G Sbjct: 414 LKQLLNDFVFDVLGLQNVEENNHQKLDQALQVLIELRNQARKAKNFDLSDQIRDRLLAEG 473 Query: 440 FILEDYKN 447 L+D ++ Sbjct: 474 IELKDGRD 481 >gi|319900445|ref|YP_004160173.1| cysteinyl-tRNA synthetase [Bacteroides helcogenes P 36-108] gi|319415476|gb|ADV42587.1| cysteinyl-tRNA synthetase [Bacteroides helcogenes P 36-108] Length = 491 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 257/503 (51%), Gaps = 60/503 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL+RK F + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEQQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVKEIMKNGYAYESEGSVYFDVAKYNKDHQYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHAECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQS A + + + W+HN L + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLVFPHHECEIAQS-VASQGDDMVHYWMHNNMLTINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL T +++ IR L HYR +DF+ + L AE LS+ Sbjct: 292 ITLEELFNGTHPLLEQAYSPMTIRFFTLQAHYRSTVDFSNEALQAAEKGLSRLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLP 383 I PA S A+ +DLN+ I L LA + D L Sbjct: 352 EKIVPATTSTIDVKTLRAKCYEAMNDDLNSPIVIAHLFDGAKMVNNILAGNDSITADDLK 411 Query: 384 IFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 H ILG++ E ++ L++ER+ K ++++D IR +L Sbjct: 412 ELEDMFHTFCFDILGLKEDNTSNEEREAAFGKVVDMLLEERMKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + GF ++D G+ WK Sbjct: 472 TALGFEIKD------GKEGCEWK 488 >gi|284989249|ref|YP_003407803.1| cysteinyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160] gi|284062494|gb|ADB73432.1| cysteinyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160] Length = 467 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 240/472 (50%), Gaps = 50/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + EF + +YVCG TV H+G+ R + FDVL R L E Sbjct: 3 LRLYDTAARAVREFTPLRAGQASVYVCGLTVQGPPHVGHVRAALSFDVLRRWLTASGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ +A + +P N + L L PT++PR Sbjct: 62 -VTYVRNVTDIDDKILVKAAER--GVPW----WAWAYTNELACTRAYDVLGVLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P M+ L++ +I GHAY + ++ FD S P YG+ + +K++ + Sbjct: 115 ATGHVPDMVELMERLIDRGHAYAVDGDVYFDVRSFPEYGALTGQKLENLEPAADTGTDER 174 Query: 185 KKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK EP W +PWGRGRPGWH+ECSAM+ YLG FDIHGGGLDL Sbjct: 175 KRDPRDFALWKAHKDGEPQTAAWATPWGRGRPGWHLECSAMAERYLGPEFDIHGGGLDLR 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE AQS A + A W+HNG++ L G KMSKS GN ++E+++ + Sbjct: 235 FPHHENEQAQSRAAG--DGFAQYWLHNGWVTLGGEKMSKSLGNTALVDEVVQRVR----- 287 Query: 302 WPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQ---TSTSKGIIDPA 350 PV +R ++ HYR I+FT L EA E + + + ++ Sbjct: 288 ---PVELRYYLVAPHYRSTIEFTDAALEEAGAAYRRIESFVKRAAERVGADAGSPVLCAD 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHILGIEVCKEH- 400 +AL +DL T +A+ A+H+ RE L A +LG++ H Sbjct: 345 FTAALDDDLGTPAAVAAVHEAVREGNTALAEGNEKAVAGALGSVRAMLGVLGLDPLDPHW 404 Query: 401 --------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + +++R K +++AD IR QL + G +ED Sbjct: 405 AAAGGGDRLGEVADGLVALALEQRQAARARKDYAAADAIRDQLAALGVQVED 456 >gi|325281506|ref|YP_004254048.1| cysteinyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712] gi|324313315|gb|ADY33868.1| cysteinyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712] Length = 492 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 174/491 (35%), Positives = 266/491 (54%), Gaps = 54/491 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK ++ +YNTL RK +F+ I+P + +YVCGPTVY AH+G+ARP I FD+L+R L+Y Sbjct: 1 MKNRLVLYNTLSRKKEQFEPINPPFVGLYVCGPTVYGDAHLGHARPAITFDLLFRYLKYL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++A+ + P+ I T ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLTDDSDDGEDKIEKKAKLDRLE-PME-----IVQFYTNRYHHN 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 +L L P+ +P A+ HI + L++ I+ +G AYE++ I FD + +YG S Sbjct: 113 MEQLNTLPPSIEPHASGHIIEQEELVKKILDNGFAYESDGSIYFDVEAYNKKYSYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R+++E TR + + K+NPADF LWK++TP W SPW G PGWH+ECS MS Sbjct: 173 RRVEELFANTRQLDGQGEKRNPADFALWKKATPEHIMRWPSPWSNGFPGWHLECSCMSQK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGGLDL FPHHE EIAQS A E W+HN + ++G+KM KS GNF Sbjct: 233 YLGDRFDIHGGGLDLQFPHHECEIAQSTAAYGHE-AVKYWMHNNMVTIKGQKMGKSLGNF 291 Query: 286 ITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+++L + +P+ +R +L HYR P+DF+ +RL A L Sbjct: 292 ITLDQLFSGENDVLEQAYSPMTVRFFILQAHYRSPLDFSNEALKAAQKGYERLMTAVRAL 351 Query: 335 SKWPQTSTSKGIIDPAVL---SALYNDLNTVSAIQALHKLAR---------ESTKNHDLL 382 K ++ + +D + A+ +DLNT I L R E +L Sbjct: 352 DKVKASAGNTVDVDALITQCEEAIDDDLNTPVLISHLFDGVRMINSLVAGNEKIDAGNLA 411 Query: 383 PI----FNASAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQL 435 + + ILG++ E ++++ + ++ ++ R + K ++++D IR +L Sbjct: 412 KLKKLYQDYVFDILGLKAESESVSQDHEVLGKILDMVMSIRTEAKQKKDWATSDKIRDEL 471 Query: 436 ESKGFILEDYK 446 ++ G ++D K Sbjct: 472 KAAGVAIKDTK 482 >gi|225155153|ref|ZP_03723648.1| Cysteine--tRNA ligase [Opitutaceae bacterium TAV2] gi|224804100|gb|EEG22328.1| Cysteine--tRNA ligase [Opitutaceae bacterium TAV2] Length = 472 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 179/483 (37%), Positives = 258/483 (53%), Gaps = 62/483 (12%) Query: 5 IKIYNTLERKITEFQAIDPSN----IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 I+++++L R+ E + PS+ R Y CGPTVY AHIGN R +V D++ RLL Sbjct: 3 IRLHDSLSREARE---LAPSHADGFFRFYNCGPTVYAPAHIGNFRTFVVNDLIRRLLEIE 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +G V +VRN+TD+DDK I R+R+E P+ D +T + T++F D T L CL P Sbjct: 60 FGPDRVRHVRNLTDVDDKTIRRSREE--KRPLAD----VTLQWTEKFHADCTALGCLPPH 113 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P AT HI + I +I + GHAY A + + F +S P YG+ SR K E K G+ + Sbjct: 114 VEPAATTHIAEQIDMIAILERKGHAYRAADGSVYFKVNSFPGYGALSRVKERELKPGSAL 173 Query: 180 P----------EKYHKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYL 227 + K++ +DF LWK P + W SPWG+GRPGWHIECSAMS +L Sbjct: 174 ASGNAAPAAAHDSDEKEDGSDFALWKARKPEDGDVFWPSPWGQGRPGWHIECSAMSKKHL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 G D+H GG+DL+FPHHENEIAQS CC + A W H+ L ++G+KMSKS N Sbjct: 234 GDTIDLHTGGVDLLFPHHENEIAQSQCCNGTL--FARHWYHSEHLLVDGKKMSKSLNNLY 291 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS--KWPQTSTSK 344 T+++L E PA +R A+L H R+ ++FT+ L AE L+ + + S K Sbjct: 292 TLDQLREMGHT-----PA-ALRYALLAGHPRKQLNFTLDSLHAAEKALATLRHFRDSLVK 345 Query: 345 GIIDP---------AVLSALYNDLNTVSAIQAL--------HKLARESTKNHDLLPIFN- 386 + P AVL+AL DLNT +A+ AL H+ A +H L F+ Sbjct: 346 RGLKPDHAPSTRFDAVLNALREDLNTPAALGALFGEINSYDHRPA-----HHGDLAAFDR 400 Query: 387 --ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A L + I L ++R + K +++AD +R Q+ + G+ + D Sbjct: 401 VIQQALGLDLTPLPPPPPAEIPAETAALAEQRWTAKQQKNYAAADALRAQIAATGWTMID 460 Query: 445 YKN 447 K+ Sbjct: 461 RKD 463 >gi|120406286|ref|YP_956115.1| cysteinyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] gi|187629833|sp|A1TG09|SYC_MYCVP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119959104|gb|ABM16109.1| cysteinyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] Length = 463 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 157/473 (33%), Positives = 234/473 (49%), Gaps = 52/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL + +F + P ++ +Y+CG TV HIG+ R + FDVL R L + Sbjct: 1 MRLYDTLSGGVRDFAPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDVLRRWLTAKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ H + + + F L L P+ +PR Sbjct: 60 -VAFIRNVTDIDDKIL------HKAADAGRPWWEWAATYERAFTAAYDALGVLPPSAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ LI+ +I GHAY + ++ F +++P+YG S +ID+ G V Sbjct: 113 ATGHITQMVELIERLIERGHAYTGDGDVYFSVATLPDYGKLSGHRIDDVHQGEGVATG-- 170 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P EP W +PWGRGRPGWH EC AM YLG FDIH GG+DL+FPH Sbjct: 171 KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMCESYLGAAFDIHAGGMDLVFPH 230 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG++ + G KMSKS GN + I +L+ + A Sbjct: 231 HENEIAQAEAAG--DGFARFWLHNGWVTMGGEKMSKSLGNVLAIPAVLQRVR-------A 281 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPA-----VL 352 +R + HYR ++F+ L +A E L + T G + P Sbjct: 282 AELRYYLGSAHYRSMLEFSETALQDAAKAYAGIEDFLHR---VRTRVGAVVPGEWTPKFG 338 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH---------ILGIEVCKEHLNK 403 +AL +DL +A+ +H E + D A H ILG + E Sbjct: 339 AALDDDLAVPAALAEVHAARAEGNRALDAGDHDTALTHAMSIRAMMGILGADPLDERWES 398 Query: 404 N---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + ++ VQ R + ++ AD IR +L+ G + D + Sbjct: 399 RDETSAALAAVDVLVQAEVQRREDARARRDWAEADAIRDRLKEAGIEVTDTAD 451 >gi|296274353|ref|YP_003656984.1| cysteinyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299] gi|296098527|gb|ADG94477.1| cysteinyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299] Length = 467 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 251/475 (52%), Gaps = 48/475 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 KI IY++++++ F+ I + ++YVCGPTVYD +H+G+AR I FD+L+R+L+ Sbjct: 3 KIFIYDSVKKEKVLFEPIVENQAKIYVCGPTVYDDSHLGHARSAIAFDMLHRVLK--ANG 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT +N TDIDDKII++ + S+ IT++ + D L L T +P Sbjct: 61 LNVTMTKNFTDIDDKIIKKMNESSRSLE------DITTQYINAYKADMHSLNILDNTLEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT ++ MI +I ++I AY ++ + FD S +YG+ S+R DE + RV Sbjct: 115 KATQNLEAMIEMINDLISKDIAYIIDDGVYFDVSKDNSYGNISKRASDENSIA-RVEVNT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG-----KVFDIHGGGL 238 K+N +DF LWK + +E+ +G+GRPGWHIECSAM +L DIHGGG Sbjct: 174 QKRNSSDFALWKFEKANDVSYEASFGKGRPGWHIECSAMIQKHLAYKDKDYQIDIHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE AQ+ C+ E A W+HNGF+ ++G KMSKS GN + ++L Sbjct: 234 DLLFPHHENEAAQTRCSSHKE-LAKYWMHNGFVTIDGEKMSKSLGNSFFLKDIL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDP 349 +S+ V+R +L HYR +F + L ++ L K+ S + Sbjct: 287 -KSYSGEVVRFYLLTAHYRTDFNFNEEDLISSKKRLDKYYRVKKRVYGSAASAANSEFKA 345 Query: 350 AVLSALYNDLNTVSAI-----------QALHKLARESTKNHDLLPIFNASAHILGI---- 394 VL+AL +D+N+ AI L K ++ +L+ F ILGI Sbjct: 346 KVLNALNDDINSSKAISIIDDMINNANDKLDKNPKDKNLKKELIANFEFINEILGICFND 405 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E + +N++ IE+L+ +R K K F++AD +R +L + G + D N Sbjct: 406 AYEYFQFGINEDTKNKIEELINKRTEAKKQKDFATADSVRDELIALGISVMDTPN 460 >gi|270294934|ref|ZP_06201135.1| cysteinyl-tRNA synthetase [Bacteroides sp. D20] gi|317477932|ref|ZP_07937115.1| cysteinyl-tRNA synthetase [Bacteroides sp. 4_1_36] gi|270274181|gb|EFA20042.1| cysteinyl-tRNA synthetase [Bacteroides sp. D20] gi|316905846|gb|EFV27617.1| cysteinyl-tRNA synthetase [Bacteroides sp. 4_1_36] Length = 491 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 257/503 (51%), Gaps = 60/503 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL RK F + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEHQLTIYNTLNRKKELFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ + FD +YG S Sbjct: 113 MDALNVLSPSIEPHASGHIIEQIELVKEILKNGYAYESEGSVYFDVEKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + E + W+HN L + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGEDMVHYWMHNNMLTVNGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL + T +++ IR L HYR +DF+ + L AE L++ Sbjct: 292 ITLEELFKGTHPMLEQAYSPMTIRFFTLQAHYRSTVDFSNEALQAAEKGLARLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLP 383 I PA S A+ +DLN+ I L LA + + L Sbjct: 352 DKITPAATSTIDVKSLRAKCYEAMNDDLNSPIVIAHLFDGAKMVNNILAGNDSITAEDLK 411 Query: 384 IFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H ILG++ E ++ L++ER K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLQEDNASNEEREAAFGKVVDMLLEERSKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + GF ++D G+ + WK Sbjct: 472 TALGFEIKD------GKDGSEWK 488 >gi|157736506|ref|YP_001489189.1| cysteinyl-tRNA synthetase [Arcobacter butzleri RM4018] gi|187629788|sp|A8ERE6|SYC_ARCB4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157698360|gb|ABV66520.1| cysteinyl-tRNA synthetase [Arcobacter butzleri RM4018] Length = 467 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 164/474 (34%), Positives = 250/474 (52%), Gaps = 48/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+++++++ EF+ I +++YVCGPTVYD +H+G+AR I FD+L+R+L+ E Sbjct: 4 LHIFDSVKKEKVEFKPIQEGKVKIYVCGPTVYDDSHLGHARSAIAFDLLHRVLKVNDYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT +N TDIDDKII++ + N + IT++ + D L L T +P+ Sbjct: 63 -VTMTKNFTDIDDKIIKKMYE------TNKTLENITNQYINAYKADMKALNILDNTIEPK 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ M +I N+I AY+ ++ + FDTS YG+ S + DE RV E Sbjct: 116 ATENLEVMKEMISNLISKDVAYKTSDSVYFDTSKDNLYGTLSHKSNDENSQA-RVEENQE 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG-----KVFDIHGGGLD 239 K+N ADF LWK + +++P+G+GRPGWHIECSAM +L DIH GG D Sbjct: 175 KRNSADFALWKFEKANDVSFDAPFGKGRPGWHIECSAMIEKHLAYKDSPYQIDIHAGGAD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ C+ + A W+HNGF+N+ G KMSKS GN + ++L Sbjct: 235 LLFPHHENEAAQTRCSSG-QNLAKYWMHNGFVNINGEKMSKSLGNSFFLKDVL------- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAV------- 351 +S+ VIR ++ THYR + F + L ++ L K + GI D +V Sbjct: 287 KSYSGEVIRFYLMSTHYRADLSFNEEDLIASKKRLDKIYRLKKRVYGIEDSSVNKKFKED 346 Query: 352 -LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKE 399 L+AL +D+NT A+ + ++ + D L+ N +LGI Sbjct: 347 ILNALNDDINTSIALSVIDEMINSANDKLDSNPKDKNLKKELISNINFIEEVLGIGGNDA 406 Query: 400 H------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + +N++ IE L+ +R K K F +AD +R +L S L D N Sbjct: 407 YAYFQFGINESTKEKIESLILKRNEAKKTKDFQTADKLRDELSSMDISLMDTVN 460 >gi|194476516|ref|YP_002048695.1| cysteinyl-tRNA synthetase [Paulinella chromatophora] gi|171191523|gb|ACB42485.1| cysteinyl-tRNA synthetase [Paulinella chromatophora] Length = 510 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 190/528 (35%), Positives = 259/528 (49%), Gaps = 94/528 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K NTL R++ F I I +Y CG TVYD H+G+AR I +DVL R L + E Sbjct: 3 LKFTNTLTRQLESFTPIKDRKISIYCCGVTVYDLCHLGHARSYIAWDVLRRYLIWRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKI+ RA +E S+ +++ +N + F D L L PR Sbjct: 62 -VTFVQNFTDIDDKILVRAAREESSM------QLVSDRNIEAFKSDMALLNILPADRMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT + + +I ++ G AY ++ F YG S + + + + G Sbjct: 115 ATKCLDGIRSIISDLEKKGVAYSTEGDVYFSIKEYAQYGKLSGKDLSKLQEGASGRISAS 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ KKN DF LWK++ EP + SPWG GRPGWHIECS M LG+ DIH GG DL Sbjct: 175 EEVRKKNSFDFALWKKAKIDEPSFTSPWGLGRPGWHIECSTMVREELGETIDIHLGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ + AN W+HNG +N+ G+KMSKS GNF TI ELL Sbjct: 235 IFPHHENEIAQSEMANG-KNLANYWLHNGMVNVNGQKMSKSLGNFTTIRELLA------- 286 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI--------------------------- 332 S +P+ +RL +L THYR+P+DF + L A I Sbjct: 287 SGISPLALRLFVLQTHYRKPLDFNSEALKAASIGWANLNIALSLGERFKKNLQWDLGEFT 346 Query: 333 -----LLSKWPQTSTSK------GIIDPAVL------SALYNDLNTVSAIQALHKLA--- 372 L++K ++S K I+DP L +A+ DLNT +AI L KLA Sbjct: 347 KLYVLLMNKEDESSQKKLKPKLIEIMDPLKLAYQNFITAMDEDLNTSAAIAILFKLAKPL 406 Query: 373 RESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIA-IEKLVQERL-------------I 418 R + + I N+++ + E + I +A I L ERL + Sbjct: 407 RSLSNRLERGEIINSNSKTVLFEELQCQWQLLIGLASILGLRAERLGEKHTSLSSNDITV 466 Query: 419 LLKM-------KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +K+ K F +AD IR L+ KG L D P N +T W Q Sbjct: 467 QIKLRNESKAKKDFLTADRIRDFLKDKGIELID--KPGN---ITEWIQ 509 >gi|313682063|ref|YP_004059801.1| cysteinyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994] gi|313154923|gb|ADR33601.1| cysteinyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994] Length = 465 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 248/472 (52%), Gaps = 50/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY+++++ +F+ + + +YVCGPTVYD AH+G+A+ +VFD+L R+L E Sbjct: 1 MTIYDSVKKTKLKFEPLREGKVSLYVCGPTVYDDAHLGHAKSALVFDLLRRVLEAEDYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITDIDDKII +A++ + S I + T + +D + APT +P+ Sbjct: 60 -VLFARNITDIDDKIINKAQE------LGITTSEIAERYTDAYHRDMAAIGVRAPTLEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I M +IQ ++ GHAY +N +I FDTSS NY S S R+ E +RV + Sbjct: 113 ATESIDAMCDMIQKLLDKGHAYSISNGDIYFDTSSDKNYLSLSNRQSSENV--SRVEKVG 170 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-----VFDIHGGGL 238 K+N ADF LWK ++SP+GRGRPGWH+ECSAM Y+ DIHGGG Sbjct: 171 EKRNEADFALWKAVHDEGVAFDSPFGRGRPGWHLECSAMIERYVTSNEGEYAIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE AQ+ CA E A W+HNGF+ + G KMSKS GN + + L Sbjct: 231 DLLFPHHENEAAQTRCATNHE-LAKYWMHNGFVTIAGEKMSKSLGNSFFLKDAL------ 283 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------TSKGI---IDP 349 +++ V+R +L THYR +F L ++ L + + ++ GI Sbjct: 284 -KAYDGEVLRFYLLSTHYRGDFNFNEDDLIASKRRLDRLYRLKKRIFGLSTDGIETEFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGI---- 394 +L AL +DLN A + +L ++ + D LL +LG Sbjct: 343 NLLEALGDDLNVSRAYALIDELIAQANEALDTNPKDKAYRQILLSSLATVETVLGFGGQD 402 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + L++ I +L+ +R K K F+++D +R +L + G + D Sbjct: 403 PYEYFQFGLDEETKTKINELIAKRSEAKKAKDFAASDALRDELTALGVSIMD 454 >gi|160888583|ref|ZP_02069586.1| hypothetical protein BACUNI_01000 [Bacteroides uniformis ATCC 8492] gi|156861897|gb|EDO55328.1| hypothetical protein BACUNI_01000 [Bacteroides uniformis ATCC 8492] Length = 491 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 257/503 (51%), Gaps = 60/503 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL RK F + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEHQLTIYNTLNRKKELFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ + FD +YG S Sbjct: 113 MDALNVLSPSIEPHASGHIIEQIELVKEILKNGYAYESEGSVYFDVEKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQSEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + E + W+HN L + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGEDMVHYWMHNNMLTVNGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL + T +++ IR L HYR +DF+ + L AE L++ Sbjct: 292 ITLEELFKGTHPMLEQAYSPMTIRFFTLQAHYRSTVDFSNEALQAAEKGLARLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLP 383 I PA S A+ +DLN+ I L LA + + L Sbjct: 352 DKITPAATSTIDVKTLRAKCYEAMNDDLNSPIVIAHLFDGAKMVNNILAGNDSITAEDLK 411 Query: 384 IFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H ILG++ E ++ L++ER K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLQEDNASNEEREAAFGKVVDMLLEERSKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + GF ++D G+ + WK Sbjct: 472 TALGFEIKD------GKDGSEWK 488 >gi|315635665|ref|ZP_07890928.1| cysteine--tRNA ligase [Arcobacter butzleri JV22] gi|315479962|gb|EFU70632.1| cysteine--tRNA ligase [Arcobacter butzleri JV22] Length = 467 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 249/472 (52%), Gaps = 48/472 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I+++++++ EF+ I +++YVCGPTVYD +H+G+AR I FD+L+R+L+ E V Sbjct: 6 IFDSVKKEKVEFKPIQEGKVKIYVCGPTVYDDSHLGHARSAIAFDLLHRVLKANDYE--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T +N TDIDDKII++ + N + IT++ + D L L T +P+AT Sbjct: 64 TMTKNFTDIDDKIIKKMYE------TNKRLEDITNQYINAYKADMKALNILDNTIEPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++ M +I N+I AY+ ++ + FDTS YG+ S + DE RV E K+ Sbjct: 118 ENLEVMKEMISNLISKDVAYKTSDSVYFDTSKDNLYGTLSHKSNDENSQA-RVEENQEKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG-----KVFDIHGGGLDLI 241 N ADF LWK + +++P+G+GRPGWHIECSAM +L DIH GG DL+ Sbjct: 177 NSADFALWKFEKANDVSFDAPFGKGRPGWHIECSAMIEKHLAYKDSPYQIDIHAGGADLL 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE AQ+ C+ + A W+HNGF+N+ G KMSKS GN + ++L +S Sbjct: 237 FPHHENEAAQTRCSSG-QNLAKYWMHNGFVNINGEKMSKSLGNSFFLKDVL-------KS 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAV--------L 352 + VIR ++ THYR + F + L ++ L K + G+ D +V L Sbjct: 289 YSGEVIRFYLMSTHYRADLSFNEEDLIASKKRLDKIYRLKKRVYGVEDSSVNKKFKEDIL 348 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH- 400 +AL +D+NT A+ + ++ + D L+ N +LGI + Sbjct: 349 NALNDDINTSIALSVIDEMINSANDKLDSNPKDKNLKKELISNINFVEKVLGIGGNDAYA 408 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +N++ IE L+ +R K K F +AD IR +L S L D N Sbjct: 409 YFQFGINESTKEKIEDLILKRNEAKKAKDFQTADEIRDELSSMDISLMDTVN 460 >gi|313900429|ref|ZP_07833922.1| cysteine--tRNA ligase [Clostridium sp. HGF2] gi|312954491|gb|EFR36166.1| cysteine--tRNA ligase [Clostridium sp. HGF2] Length = 445 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 168/469 (35%), Positives = 251/469 (53%), Gaps = 56/469 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KI+N++ +K+ EF+ + + + MYVCGPTVY++ HIGNARP++VFD L R + Y Sbjct: 1 MKIFNSMNQKVEEFKPLHENEVHMYVCGPTVYNYPHIGNARPIVVFDTLKRTFQAIGYNV 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V+ N TD+DDKII+ A++ +++A IT K + D L P P Sbjct: 61 KMVS---NYTDVDDKIIKVAKE----CGVSEA--EITEKFIDAYNHDRLSLHAAMPDAAP 111 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T + +I I+ ++ GHAYE ++ F +S+ +YG S ++I++ +G R+ E Sbjct: 112 RVTETMDAIIAFIKLLVDKGHAYEMEGDVYFRVNSVESYGKLSNQQIEDLLVGARIDENS 171 Query: 184 HKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGK--VFDIHGGGLD 239 K+NP DF LWK++ E G W+SPW GRPGWH EC M + G DIHGGG+D Sbjct: 172 KKENPLDFTLWKKT---EEGIKWDSPWSVGRPGWHTECVVMINQEFGGEHTIDIHGGGMD 228 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A AN WIHNG +N++G KMSKS GN I +++ K GG Sbjct: 229 LKFPHHENEIAQSRAA-YDSPIANYWIHNGMVNIDGEKMSKSLGNVIWAKDMI--AKIGG 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID------- 348 V+R ML HYR P++ + + A+ L++ Q G+ D Sbjct: 286 N-----VLRWVMLSAHYRAPLNINEEAIETAKKELNRVATAMKQAYVKLGLADVDMDETC 340 Query: 349 -----PAVLSALYNDLNTVSA-------IQALHKLARESTKN----HDLLPIFNASAHIL 392 L A+ +D+NT +A ++AL++ R+ + L+ +L Sbjct: 341 DEEQLAPFLDAMQDDMNTPNAFAAVFETVKALNQALRQREIDLQAVKALVRTLEKMMDVL 400 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 GIE+ L +S ++L ++ +K K F +AD R +L KG + Sbjct: 401 GIEL----LRLTMSEEDKQLHRQWKAAVKEKDFETADQYRAKLIEKGIL 445 >gi|317123115|ref|YP_004103118.1| cysteinyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885] gi|315593095|gb|ADU52391.1| cysteinyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885] Length = 518 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 138/327 (42%), Positives = 192/327 (58%), Gaps = 16/327 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL + F+ ++P +RMY CGPTVYD+ H+GN R + FDV+ L Y G + Sbjct: 3 IQIYNTLTGQKEPFEPLEPGRVRMYNCGPTVYDYFHVGNLRTFLFFDVVRGWLEYR-GYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I RA + I + + + + + + +D L + PR Sbjct: 62 -VRYVQNFTDIDDKLIRRAAER--GITVKE----LADEQIRAYFEDADALGIVRADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + I +I LI+ +I G+AY A ++ FD +YG S +K ++ G RV + Sbjct: 115 VSEKIGAIIALIRRLIDQGYAYVAGGDVFFDVERFRHYGKLSGQKTEQLLAGARVEAAEN 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK P EP W+SPWG GRPGWHIECSAM+ LG+ DIH GG DL+FPH Sbjct: 175 KRNPLDFALWKAQKPGEPAWDSPWGPGRPGWHIECSAMAMDELGQTIDIHSGGSDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+H + + G++M KS GNF + +L R P Sbjct: 235 HENEIAQSEAATG-KPFARYWMHVALVQVGGQRMGKSMGNFWRVRDLR------ARYHPE 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE 331 IRL +L HYR P++F+++ L +AE Sbjct: 288 -AIRLFILSAHYRNPLEFSLEALDQAE 313 >gi|86609278|ref|YP_478040.1| cysteinyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|109894953|sp|Q2JKL2|SYC_SYNJB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86557820|gb|ABD02777.1| cysteinyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 525 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 187/546 (34%), Positives = 256/546 (46%), Gaps = 121/546 (22%) Query: 7 IYNTLERKITEFQAIDPSN----------------------IRMYVCGPTVYDFAHIGNA 44 +YNTL R+ FQ + +RMYVCG TVYD H+G+A Sbjct: 3 VYNTLTRRKEVFQPLAAGGSQSVSVGNSQGSAAPVAEEKPLVRMYVCGVTVYDLCHLGHA 62 Query: 45 RPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 R +V+D++ R L + G + V YV+N TD+DDKI++RA + +++ + + Sbjct: 63 RTYVVWDMVRRYLEWR-GYR-VKYVQNFTDVDDKILKRALER------GESMQAVAERFI 114 Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-------------- 150 ++ +D L PRAT + M LIQ++ L G AY + Sbjct: 115 AEYFRDMDCLNIKRADFYPRATQSLQAMFQLIQSLELKGFAYRVRDPIRHQTDQSSLLQA 174 Query: 151 ------------EIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK-YHKKNPADFILWK 195 + + P+YG S RK++E + G RV E+ K++P DF LWK Sbjct: 175 GHQPETPASVQYSVYYSVRKFPDYGQLSGRKLEEMEAGASGRVGEEGAEKQDPFDFALWK 234 Query: 196 RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 + P EPG+ SPWG GRPGWHIECSAM LG DIH GG DLIFPHHENE+AQS Sbjct: 235 AAPPSEPGFASPWGWGRPGWHIECSAMVRETLGDHIDIHAGGADLIFPHHENELAQSEPI 294 Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH 315 + A W+HNGFLN+ G KMSKS GNF T+ + L + +RL +L TH Sbjct: 295 TG-KPMAKYWMHNGFLNINGEKMSKSLGNFTTLRQALAV-------YHPMALRLFLLQTH 346 Query: 316 YREPIDFTVQRLTEAEILLSKWPQTSTSKGI-----------------IDPAVLSALYND 358 YR PID LTEA + + + KGI A +A+ ND Sbjct: 347 YRSPID-----LTEAAMQAASRGWETLQKGIHCAQHFCKEEKGSPDAEAMQAFQAAMDND 401 Query: 359 LNTVSAIQALHKLARESTKNHDLL-----------PIFNASAHILGI------------- 394 T A+ +LA+E T+ H+L + SA +L I Sbjct: 402 FGTPEALAIAFELAKELTREHNLFTHQGQTHLEPQALKQKSAALLEILATLGFCWPSFSE 461 Query: 395 -EVCKEHL-NKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 E KE N ++ IE+L+ +R K K FS AD IR QL++ G L D K+ Sbjct: 462 FEGSKEAATNGELNFKKIEELIAQRSAARKAKNFSEADRIRDQLKALGITLIDQKDG--- 518 Query: 452 QRMTRW 457 TRW Sbjct: 519 --TTRW 522 >gi|48477156|ref|YP_022862.1| cysteinyl-tRNA synthetase [Picrophilus torridus DSM 9790] gi|48429804|gb|AAT42669.1| cysteinyl-tRNA synthetase [Picrophilus torridus DSM 9790] Length = 455 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 161/466 (34%), Positives = 246/466 (52%), Gaps = 41/466 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+TL + EF+ + + I ++VCGPTVYD H+G+AR I FD + + +R Sbjct: 1 MRFYDTLSGSVKEFKPMHKNRINIFVCGPTVYDDFHLGHARTYIFFDTIVKFMRSI--GY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITDIDDKII+RA E S P I ++ ++++ + L + + R Sbjct: 59 SVFYLQNITDIDDKIIKRAHDEDRS-P-----EEIANRYFNEYLRIMSELGIDSVNYYAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I I+ +I G+AYE ++ + F +YG S++ +D R Sbjct: 113 ATLYIDEIISQIKRMIEKGYAYETSDGVYFCVRKFRDYGELSKQNLDNIIENARGILNED 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK+ P EP WESPWG+GRPGWHIE +A++ Y G +DIHGGG DLIFPH Sbjct: 173 KRNPEDFVLWKKMKPGEPYWESPWGKGRPGWHIEDTAITETYFGDEYDIHGGGSDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE EIAQ A+ WIH G +N+ KMSKS N+ITI ++L + + Sbjct: 233 HEAEIAQMRSISNKRYLAHYWIHTGMINVNREKMSKSLKNYITIKDVL-------KEYKP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSAL 355 +R A+L ++ I+F++ L E+ LS+ T + ++D + Sbjct: 286 NELRFAVLNANFNTSIEFSMDSLNESREALSRIINTYRKLKKIDSESGDYMVDSDYIIKR 345 Query: 356 YNDL-----NTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEHL 401 Y D+ +T S I+ L + KN D ++ IF+ + I + L Sbjct: 346 YMDIMSDNFDTRSLIRELMDFVTDINKNMDHINKDTAGNIIRIFDYINSFMNIIPEERSL 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N NI I+ ++ R L K++ +DYIR +LE G +ED N Sbjct: 406 NNNI---IDSVLNIRSKLRSEKRYDLSDYIRMELEKSGIHIEDKNN 448 >gi|332298095|ref|YP_004440017.1| cysteinyl-tRNA synthetase [Treponema brennaborense DSM 12168] gi|332181198|gb|AEE16886.1| cysteinyl-tRNA synthetase [Treponema brennaborense DSM 12168] Length = 497 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 174/503 (34%), Positives = 251/503 (49%), Gaps = 81/503 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R++ +F I Y CGPTVY+FAHIGN R + D+L R L Y + Sbjct: 3 LRLYNTLGRQLQDFIPIHAGKAGFYGCGPTVYNFAHIGNLRAYVFLDILDRTLTYLGYD- 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 +T+V NITDI +DK+++ A+ S+ I T F D RL Sbjct: 62 -ITHVMNITDIGHLSGDADEGEDKMVKTAKDRGQSVLE------IAQFYTDAFFGDIDRL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P +AT H+P MI LI+ I +GH Y A + FD S+ P+YG + +D+ K Sbjct: 115 NIRRPDVVCKATEHVPDMIELIKRIEANGHTYTAGGNLYFDVSTFPSYGDLAGLNLDDLK 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G R+ +K+NP DF+LW + E W+SPWGRG PGWHIECSAMS YLG+ F Sbjct: 175 AGARIDIDRNKRNPFDFVLWFTKSKFENQALVWDSPWGRGYPGWHIECSAMSMKYLGEQF 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE---------GRKMSKSN 282 DIH GG+D I HH NEIAQS A +K N W+HN FL + KMSKS+ Sbjct: 235 DIHTGGIDHIPIHHTNEIAQSEGATG-KKWVNYWLHNEFLVIAKDKESADGGAGKMSKSS 293 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT--------------VQRLT 328 GNF+T+ L++ + + A R +L HYR + F+ VQR+ Sbjct: 294 GNFLTLQSLVD------KGYDALDYRFFLLGAHYRSQVAFSWAAMDGAKNARKALVQRV- 346 Query: 329 EAEILLSKWPQTSTSKGI------------IDPAVLSALYNDLNTVSAIQALHKLAREST 376 A++L + T G+ +D +AL NDL T A+ AL +++ Sbjct: 347 -AKVLARSAERVQTGAGLPTKKPSARAHAYLDK-FTAALENDLATPQALSALQTAVKDAE 404 Query: 377 -KNHDLLPIFNASAHILGIEVCK---EHLNKNISIA-----------IEKLVQERLILLK 421 +++ + +L +++ K + L + A I+ L++ER K Sbjct: 405 LAPEEVVSLVQRMDSVLALDLLKNARQLLADETAAAVTDGSDPEAKEIQALIEERTAAKK 464 Query: 422 MKKFSSADYIRKQLESKGFILED 444 K ++ AD IR +L +G ILED Sbjct: 465 AKNYARADEIRTELNGRGIILED 487 >gi|260906618|ref|ZP_05914940.1| cysteinyl-tRNA synthetase [Brevibacterium linens BL2] Length = 483 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 169/487 (34%), Positives = 245/487 (50%), Gaps = 65/487 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNT R E + ++ ++ +YVCG TV HIG+ R VFD L R L Y Sbjct: 3 IALYNTASRTTDELRPVNAGHVGIYVCGATVQGEPHIGHLRSASVFDQLRRWLMYR--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT VRN+TDIDDKI+ ++ +E + K + F + L L P+++PR Sbjct: 61 SVTLVRNVTDIDDKILSKSAEEGRPWFAH------AFKYERAFTQAYAALDVLPPSYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT HI +MI LI +I G+AY A + ++ F +S +YG + +++++ + Sbjct: 115 ATGHITEMIELIDRLITAGYAYPALDDSGDVYFAATSWADYGELTNQRLEDMEPANDADL 174 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+ DF LWK P EPG W +PWGRGRPGWHIECSAMS+ YLG+ FDIHGGGL Sbjct: 175 R-GKKDARDFALWKAHKPGEPGTASWPAPWGRGRPGWHIECSAMSTKYLGENFDIHGGGL 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A ++ ANIW+H+G LN+ G KMSKS GN + +EL Sbjct: 234 DLRFPHHENELAQSRAAG--DRFANIWMHSGLLNVGGDKMSKSLGNSVFASELFH----- 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------------WPQT 340 + +R + YR ++F+ + + L + P+ Sbjct: 287 --RYSPLAVRFFLTGASYRSILEFSPEAMDRQTASLDRLANFLQRARQTLGEDAPALPEV 344 Query: 341 S---TSKGIIDPA-VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFN 386 S +++G+ PA +AL +DL A+ + E K D ++ Sbjct: 345 SDGYSTRGVDVPAEFAAALDDDLGVPRALSVVFATVTEGAKLLDSGQDRSQLTQIVAEVE 404 Query: 387 ASAHILGIEV-----CKEHLNKNISIAIEKLV----QERLILLKMKKFSSADYIRKQLES 437 ILG+ K N + A++ LV +R K F++AD IR L S Sbjct: 405 LMLDILGVNPSAEAWAKSGTNATVETALDSLVDALASQRAAAKAEKDFATADAIRDSLAS 464 Query: 438 KGFILED 444 G ++ED Sbjct: 465 AGIVIED 471 >gi|149175961|ref|ZP_01854578.1| cysteinyl-tRNA synthetase [Planctomyces maris DSM 8797] gi|148845115|gb|EDL59461.1| cysteinyl-tRNA synthetase [Planctomyces maris DSM 8797] Length = 518 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 140/342 (40%), Positives = 193/342 (56%), Gaps = 27/342 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL RK +FQ I P + +Y+CGPTVY +HIG+ ++ D + R L Y Sbjct: 3 LRIYNTLSRKKEDFQTIKPGKVGIYLCGPTVYKHSHIGHMVGPVIIDTIARYLTY--NNY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITDIDDK+I +A + +N ++ + + TQ + + + T P+ Sbjct: 61 DVKFVNNITDIDDKLINKAAE------LNISVEKLAADMTQDYFDNLETMGVDTITDFPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I M +IQ++I AY + ++ F ++ YG S RKI+E GTRV Sbjct: 115 ATDYIEAMQEIIQSLIDKDFAYPLDGDVYFSAAADNKYGCLSGRKIEEMIAGTRVEANDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNPADF LWK+S P EP W+SPWG GRPGWHIECSAMS LG FDIHGGGLDL+FPH Sbjct: 175 KKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPH 234 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFL---NLEGRKMSKSN--GNFITINELLETKKFG 298 HENE AQS CC + W+HNG + + G+ + + G+ + E K Sbjct: 235 HENERAQSECCTGKT--YVRYWVHNGLMQASDAAGKVGGQHDRHGDVAVDQQAQEADKLS 292 Query: 299 GRSW-----------PAPVIRLAMLMTHYREPIDFTVQRLTE 329 G P ++RL +L THYR PI F+ + + E Sbjct: 293 GSKGAASVKELFAVHPPEIVRLFLLSTHYRSPIAFSDENIRE 334 >gi|145296638|ref|YP_001139459.1| cysteinyl-tRNA synthetase [Corynebacterium glutamicum R] gi|166200145|sp|A4QH41|SYC_CORGB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|140846558|dbj|BAF55557.1| hypothetical protein [Corynebacterium glutamicum R] Length = 460 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 250/472 (52%), Gaps = 56/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + +F+ + P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 3 LRIFDTGTRTLRDFKPVQPGHASVYLCGATPQSSPHIGHVRSAVAFDILRRWLMAKGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + +S ++F L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILTKASEN--GRPWWEWVSTYE----REFTWTYNTLGVLPPSTEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-----NYGSFSRRKIDEQKMGTRV 179 AT H+ QMI +Q +I +G AY + + FD ++ +YGS S ++++ + G Sbjct: 115 ATGHVTQMIEYMQRLIDNGFAYAVDGSVYFDVAAWSKAEGSDYGSLSGNRVEDMEQGE-- 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P+ + K+ P DF LWK + P EP W +PWG GRPGWH+ECSAM+++YLG+ FDIH GGLD Sbjct: 173 PDNFGKRGPQDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMATYYLGEQFDIHCGGLD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQ+ A +K AN W+HN ++ + G KMSKS GN + + E+L+ + Sbjct: 233 LQFPHHENEIAQAHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLAVPEMLKQVR--- 287 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA---------------EILLSKWP---QT 340 PV +R + HYR ++++ L+EA ++ + +W + Sbjct: 288 -----PVELRYYLGSAHYRSVLEYSESALSEAAVGYRRIESFLERVGDVEVGEWTPGFEA 342 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-- 398 + + I P L+ ++N + +A AL K RE+ K L A +LG + + Sbjct: 343 AMDEDIAVPKALAEIHNAVREGNA--ALDKGDREAAKK--LASSVRAMTGVLGFDPVEWG 398 Query: 399 ------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +K + + I ++ R K ++ AD +R +L G + D Sbjct: 399 SDAGADGKADKALDVLISSELERRATARAEKNWTVADEVRDRLADAGIEVVD 450 >gi|332884059|gb|EGK04339.1| cysteinyl-tRNA synthetase [Dysgonomonas mossii DSM 22836] Length = 491 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 179/506 (35%), Positives = 265/506 (52%), Gaps = 61/506 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ +YNTL RK F+ + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEQKLLVYNTLTRKKEVFEPLHAPHVGMYVCGPTVYGDGHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLENDADEGEDKIAKKARLEQLE-PME-----VVQYYVNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I I+ I+ G+AYE+N + FD +YG S Sbjct: 113 MDALNVLSPSIEPHASGHIIEQIEAIKGILKAGYAYESNGSVYFDVEKYNKDYDYGILSH 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I+E TR + + K++ DF LWK++ P W SPW G PGWHIECS MS Sbjct: 173 RNIEEMLNTTRELDGQEEKRSRVDFALWKKAAPEHIMRWPSPWSDGFPGWHIECSTMSIK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGGLDL+FPHHE EIAQ+ ++ + W+HN + + G+KM KS GNF Sbjct: 233 YLGREFDIHGGGLDLMFPHHECEIAQNTAMEK-HQVVRYWMHNNMITIGGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILL 334 IT++E + K +++ IR +L HYR +DF +++RL +A + Sbjct: 292 ITLDEFFTGSHKMLVQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKSLERLYDAYARI 351 Query: 335 SKWPQTSTSK---GIIDPAVLSALYNDLNTVSAI----QALHKLARESTKN--------H 379 K P ++TS I AL +DLN+ I +A + ST N + Sbjct: 352 EKIPVSATSSVDVKNIRNKCYEALNDDLNSAIVIAHLCEAGTTINSASTGNITLSQEDIN 411 Query: 380 DLLPIFNASAH-ILGIE----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +L +F+ ILGI N+ A++ L++ R + K ++++D IR + Sbjct: 412 ELKEVFDIFLFGILGIRNDAIGANSGNNEAFGKAVDLLLEIRQKAKENKDWATSDQIRNE 471 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L GF ++D G+ WK K Sbjct: 472 LAKAGFEIKD------GKDGAEWKLK 491 >gi|309777271|ref|ZP_07672233.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914951|gb|EFP60729.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 446 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 253/474 (53%), Gaps = 66/474 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +K++N++ +K+ EF+ + + MYVCGPTVY++ HIGNARP++VFD L R + Y Sbjct: 2 MKLFNSMNQKVEEFKPLHEHEVHMYVCGPTVYNYPHIGNARPIVVFDTLKRTFQAIGYNV 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V+ N TD+DDKII+ A++ +++A IT K + KD L + P P Sbjct: 62 KMVS---NYTDVDDKIIKVAKE----CGVSEAD--ITEKFIDAYNKDRLSLHAMMPDAAP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 R T + +I I+ ++ G+AYE + ++ F +S+ +YG S +++++ +G R+ E Sbjct: 113 RVTETMDAIIAFIKLLVDKGNAYEIDGDVYFRVNSVESYGKLSNQQVEDLLVGARIDENS 172 Query: 184 HKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGK--VFDIHGGGLD 239 K+NP DF LWK++ E G W+SPW GRPGWH EC M + DIHGGG+D Sbjct: 173 KKENPLDFTLWKKT---EEGIQWDSPWSVGRPGWHTECVVMINQEFHDEHTIDIHGGGMD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A AN WIHNG +N++G KMSKS GN I +++ K GG Sbjct: 230 LKFPHHENEIAQSRAA-YDSPIANYWIHNGMVNIDGEKMSKSLGNVIWAKDMI--AKIGG 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDPAV---- 351 V+R ML HYR P++ + + A+ L++ Q + D AV Sbjct: 287 N-----VLRWVMLSAHYRAPLNINEEAIETAKKELNRVATAMKQAYVKLNLADVAVAEAY 341 Query: 352 --------LSALYNDLNTVSAIQALH---KLARESTKNHD--------LLPIFNASAHIL 392 L A+ +DLNT +A A+ K+ ++ + D LL +L Sbjct: 342 DETQLAPFLDAMQDDLNTPNAFAAVFETVKVLNQTLRQRDADLNAVAALLHTLEKMMEVL 401 Query: 393 GIEV-----CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 GI++ C+E +K + + V+E K F++AD R QL KG + Sbjct: 402 GIDIPRLTMCEE--DKQLHKLWKAAVKE-------KDFATADQYRAQLIEKGIL 446 >gi|108804992|ref|YP_644929.1| cysteinyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941] gi|123068971|sp|Q1AU11|SYC_RUBXD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|108766235|gb|ABG05117.1| cysteinyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941] Length = 470 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 171/476 (35%), Positives = 244/476 (51%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ ++L + E + +YVCGPTVY+ HIGN R + +DV R LR G + Sbjct: 3 VKVRDSLSGGLVEVGG--DGRVGIYVCGPTVYNHIHIGNVRGHLFWDVAVRFLRSR-GYR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITDIDDKII RA +E S I + T F + L P +PR Sbjct: 60 -VKFVWNITDIDDKIINRANEEGVSW------KEIVRRYTDSFHERLRLLGIGMPDVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+MI LI+ +I GHAY A N ++ + + P YG+ S+++ +E K+ T + Sbjct: 113 ATEHIPEMISLIEELIRRGHAYPAPNGDVYYAVETFPRYGALSKQRPEEMKI-TEKGQTG 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HK+NP DF LWK S P EP WESPWG GRPGWHIECSAM +L DIHGGG D+ FP Sbjct: 172 HKRNPLDFTLWKASKPGEPSWESPWGPGRPGWHIECSAMVEKHLPGGADIHGGGSDIRFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSC A W H+G + + +KM+KS GN + E T K G Sbjct: 232 HHENELAQSCGAHPDRPFVRAWAHHGMVRMAAQKMAKSVGNVVDAREA--TLKHG----- 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTE----AEILLSKWPQTSTSK----------GIIDP 349 IR+ +L +HY +PID++ + L E E LL + + S S+ G + Sbjct: 285 RDAIRMWLLQSHYSQPIDYSDEILEEKRRSCERLLRLYREISRSEASSPLSDRLAGELRE 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------IFNASAHILGIEVCK 398 +A+ D NT AI AL A + + P +LG +V Sbjct: 345 RFDAAMREDFNTPEAIAALFDAASGAGREISSRPSAAGEFASLKEALQELLGLLGFDVAG 404 Query: 399 EHLNKNISIAIEKLVQERLILL----------KMKKFSSADYIRKQLESKGFILED 444 E +++ + I + +L + +++ AD +R++L +G+ +ED Sbjct: 405 ERVSEVDGVRIRHAGEAPGEVLERVARRERARRRREWPEADRLREELLREGWAIED 460 >gi|329947309|ref|ZP_08294576.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328525526|gb|EGF52570.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 549 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/512 (32%), Positives = 254/512 (49%), Gaps = 90/512 (17%) Query: 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y++ R + P + +Y+CG TV HIG+ R I FDVL R L G Sbjct: 46 LRLYDSAARAVVPLAPTATPGLVTIYLCGATVQGSPHIGHMRSGIAFDVLRRWLER--GG 103 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V +RN+TDIDDKI+ ++ P +P + ++F L APT++P Sbjct: 104 QEVRLIRNVTDIDDKILSKSAAAEPPVPW----WAWAQRFEREFDAAYRALGVAAPTYEP 159 Query: 124 RATNHIPQMIYLIQNIILHGHAY--EANNEIIFDTSSIPNYGSFSRRKI-------DEQK 174 RAT HIP+MI L+Q ++ GHAY E+ N + +D S+P YGS + +++ DE + Sbjct: 160 RATGHIPEMIDLVQRLLDAGHAYIGESGN-VYYDVRSLPGYGSLTNQRLEDLATTEDESQ 218 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 + V + K++P DF LWK + P EP W++PWGRGRPGWH+ECS MS YLG F Sbjct: 219 LDDDV--EADKRDPRDFALWKAAKPTEPADAAWDAPWGRGRPGWHLECSTMSRRYLGDTF 276 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DL FPHHENE AQS A A W+HN ++ ++G KMSKS GN + + EL Sbjct: 277 DIHGGGIDLRFPHHENEQAQSHGAGW--GFARHWVHNAWVTIKGEKMSKSLGNSLVVAEL 334 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTS 341 L + + A V+RLA+ H+R ++F+ + L +AE L + + Sbjct: 335 L-------KRYDAAVLRLALGTVHHRSTVEFSDETLADAEALWERLSSAILRAYEFSDDG 387 Query: 342 TSKGIIDPAV-----------LSALYNDLNTVSAIQALH--------KLARESTKNH--- 379 + + PA +A+ DLN A+ +H LA+ + Sbjct: 388 GANSVDAPAAQVRARALPAEFTAAMDEDLNLAGAMAVVHATLKALNVALAKAEAGSSSSK 447 Query: 380 -----------DLLPIFNASAHILGIEVCKE----HLNKNISIA--------IEKLVQ-- 414 DL + +LG++ E H+ + + +++L+Q Sbjct: 448 EADADLHESVADLALDLRSQLDVLGLDPLAEPWRTHVLDGVGSSQSGTAMETLDRLIQHD 507 Query: 415 --ERLILLKMKKFSSADYIRKQLESKGFILED 444 ER K + AD +R +L G ++ED Sbjct: 508 LDERARARATKDWPRADALRDKLTQAGVVVED 539 >gi|311740178|ref|ZP_07714010.1| cysteine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304733|gb|EFQ80804.1| cysteine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 462 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 175/476 (36%), Positives = 246/476 (51%), Gaps = 55/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 ++IY+T R +F+ I P + +Y+CG T HIG+ R + FD+L R LL Y Sbjct: 4 LRIYDTATRSQRDFEPIRPGHASIYLCGATPQAQPHIGHLRSGVAFDILRRWLLAQGYD- 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V VRN+TDIDDKI+ +A + N S ++F K L + P+ +P Sbjct: 63 --VALVRNVTDIDDKILTKAAEN------NRPWWEWVSTYEREFTKAYNTLGVIPPSVEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT + QM+ +Q +I G AY A+ + FD ++ +YGS S K++E + G Sbjct: 115 RATGFVTQMVDYMQRLIDAGFAYPADGSVYFDVAAWTKAEGSDYGSLSGNKVEEMEQGE- 173 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+ DF LWK + P EP W +PWG GRPGWH+ECSAMS++YLG FDIH GGL Sbjct: 174 -GEDSAKRGAQDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMSTYYLGSNFDIHCGGL 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A +K AN W+HN ++ + G KMSKS GN ++I +LE + Sbjct: 233 DLQFPHHENEIAQSHAAG--DKFANYWMHNHWVTMSGEKMSKSLGNVLSIPNMLELVR-- 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA---------------EILLSKWPQTST 342 PV +R + HYR ++++ LTEA ++ L +W Q Sbjct: 289 ------PVELRYYLGSAHYRSVLEYSEAALTEAAAGYRRIEDFLGHFDDLELGEWTQGFA 342 Query: 343 SKGIIDPAVLSALYNDLNTVSAI-QALHKLARESTKNHDLLPIFNASAHILGIEVCKEHL 401 D AV AL TV A +AL A + + L A AH+LG + + Sbjct: 343 DAMNDDIAVPKALAEIHTTVRAGNKAL--AAGDEAEARTLAGQVRAMAHVLGFDPLEWED 400 Query: 402 NKNIS---IAIEKLVQ---ERLILLKM-KKFSSADYIRKQLESKGFILEDYKNPDN 450 S A++ LVQ ER + K F++AD +R +L + G + D PD Sbjct: 401 GAQASGADAALDALVQAELERRTQARADKDFATADAVRDRLAAAGITITD--TPDG 454 >gi|13542075|ref|NP_111763.1| cysteinyl-tRNA synthetase [Thermoplasma volcanium GSS1] gi|21264017|sp|Q978Z5|SYC_THEVO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 454 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 244/460 (53%), Gaps = 40/460 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R++ EF + + ++VCGPTV D HIG+AR I FD + + L+ V Sbjct: 3 IYNTLTRRLQEFNEMHRGRVNLFVCGPTVQDHFHIGHARTYIFFDAVAKFLKL--EGYSV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y++NITDIDDKII RA++ I ++ I S +F +D RL + RAT Sbjct: 61 FYLQNITDIDDKIINRAKE--MGIEPSEVAKIYFS----EFQEDMKRLKVDSVNFFARAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I +++ I ++ G+AYE ++ + F+ +YG S + +D+ G RV +K+ Sbjct: 115 LYIDEIVSQISRMMEKGYAYETDDGVYFEVRKFKDYGELSNQSLDQIIAGYRVAVNENKR 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF+LWK+ EP W SPWG GRPGWHIE +A++ Y G +DIHGGG DLIFPHHE Sbjct: 175 NPEDFVLWKKKKAGEPSWPSPWGEGRPGWHIEDTAITETYFGDEYDIHGGGSDLIFPHHE 234 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 EIAQ A+ WIH G +N+ KMSKS NFITI ++L + + Sbjct: 235 AEIAQMRSISGKRYLAHYWIHTGMININKEKMSKSLKNFITIRDIL-------KDYRPED 287 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPAVLSALY- 356 +R A+L +YR I+F+ + + E++ L+ ++ S + I +V+S + Sbjct: 288 LRFAILNANYRTQIEFSKELMEESKKLIDYINDTYRKLEYVNGSGNFKIDVNSVISEMRS 347 Query: 357 ---NDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHILGIEVCKEHLNKN 404 ND + S I L + E +N +L ++ LGI K+ ++K Sbjct: 348 LAENDFDFHSVIVKLLAITGEINRNFEGINKEVAEELKKVYLWVDTFLGILEQKKEVSKG 407 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I ++ LV+ R + K K F +D IR L+ G +ED Sbjct: 408 I---VDDLVELRTRMRKEKNFLISDAIRDVLKKNGIHIED 444 >gi|218131787|ref|ZP_03460591.1| hypothetical protein BACEGG_03408 [Bacteroides eggerthii DSM 20697] gi|217986090|gb|EEC52429.1| hypothetical protein BACEGG_03408 [Bacteroides eggerthii DSM 20697] Length = 491 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 176/492 (35%), Positives = 257/492 (52%), Gaps = 54/492 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL+RK F + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEQQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MDALNVLSPSIEPHASGHIIEQIALVKEIMKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ +R + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTSRELDGQSEKHNPADFALWKCAQPEHIMRWPSPWSNGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + W+HN L + G+KM KS GNF Sbjct: 233 YLGENFDIHGGGMDLIFPHHECEIAQS-VASQGHDMVHYWMHNNMLTVNGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL T +++ IR L HYR +DF+ + L AE L++ Sbjct: 292 ITLEELFTGTHPMLEQAYSPMTIRFFTLQAHYRSTVDFSNEALQAAEKGLARLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLP 383 I PA S A+ +DLN+ I L + LA T + L Sbjct: 352 DKITPAATSTVDAKALRAKCYEAMNDDLNSPIVIAHLFEGAKMVNNILAGNDTITAEDLK 411 Query: 384 IFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H+ ++ KE N ++ L++ER+ K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLKEDNASNAEREAAFGKVVDMLLEERMKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 472 TALGFEIKDGKD 483 >gi|326332066|ref|ZP_08198351.1| cysteine--tRNA ligase [Nocardioidaceae bacterium Broad-1] gi|325950204|gb|EGD42259.1| cysteine--tRNA ligase [Nocardioidaceae bacterium Broad-1] Length = 469 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 171/479 (35%), Positives = 248/479 (51%), Gaps = 61/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y++ R++ +F + P +YVCG TV H+G+ R + FDVL R LR E Sbjct: 3 LRLYDSATREVRDFTPLQPGKASLYVCGLTVQSEPHVGHVRSGVNFDVLQRWLRASGYE- 61 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 T++RN+TDIDDKI+ + A Q P N A + + + R PT++P Sbjct: 62 -TTFIRNVTDIDDKILAKSADQGRPWY--NLAYDMHRELDAAYASLNVAR-----PTYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT HIP++I LI+ +I GHAY A + ++ FD S P YG S +K+D+ + Sbjct: 114 LATGHIPEIIALIEELIAKGHAYAAEDGSADVYFDVRSWPAYGELSGQKVDDMEAAADAD 173 Query: 181 EKYHKKNPADFILWKR---STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK S P W SPWG GRPGWHIECSAM+ YLG FD HGGG Sbjct: 174 PR-GKRDPRDFALWKGRKVSEPETASWPSPWGLGRPGWHIECSAMAGKYLGPAFDFHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDL FPHHENE AQS A R A+ W+HN ++ G KMSKS GN + I E+L KK Sbjct: 233 LDLRFPHHENEQAQSRAAGR--PFASYWLHNAWITTSGEKMSKSLGNSLVIPEVL--KKV 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTST---SKGII 347 G +R ++ HYR ++F+ + L EA E L + + G+ Sbjct: 289 RGIE-----LRYYLVAAHYRSHVEFSFEALDEAAAGFQRIEGFLDRAASVIGEIPADGVP 343 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------HILGIE 395 ++A+ +DL T +A+ ALH++ RE K LL ++ A ILG++ Sbjct: 344 STDFVAAMDDDLGTPAAVAALHEVVREGNK---LLADGDSPALRGVATSVRAMLDILGLD 400 Query: 396 ----------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E L + + + ++ ER K ++ AD +R +L+ G +ED Sbjct: 401 PADPSWGPESGADEKLTGALDVLVRGVLDERAEARAAKDWARADAMRDRLKDAGIEIED 459 >gi|319937669|ref|ZP_08012072.1| cysteinyl-tRNA synthetase [Coprobacillus sp. 29_1] gi|319807104|gb|EFW03718.1| cysteinyl-tRNA synthetase [Coprobacillus sp. 29_1] Length = 445 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 172/472 (36%), Positives = 249/472 (52%), Gaps = 62/472 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL K EF I + +YVCGPTVYD AHIGNARP+IVFD+L R Y G K Sbjct: 1 MKVFNTLTNKKEEFVPIKQGEVSIYVCGPTVYDHAHIGNARPLIVFDILRRTFE-YLGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD----TTRLACLAPT 120 VT+V N TD+DDKII+ A++E I + T +++K + L L PT Sbjct: 60 -VTFVSNFTDVDDKIIKAAKEE----------GITEKELTDKYIKAYNDIRSGLNLLFPT 108 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 + PR T + +I IQ+++ G AYE + ++ F + I YG S K+++ G R Sbjct: 109 YSPRVTETMQPIIDFIQSLVDQGFAYEVDGDVYFRVTKINEYGMLSGIKVEDLIAGASER 168 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL--GKVFDIHGG 236 V E K++ DF LWK+ T +ESPW +GRPGWH EC M + G++ DIHGG Sbjct: 169 VDENDKKESSTDFALWKK-TDEGIQFESPWSKGRPGWHTECVVMINDIFDDGRI-DIHGG 226 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENEIAQS AN+W+HN +N++ +KMSKS GN + +L+ET Sbjct: 227 GQDLKFPHHENEIAQSMACHH-HPIANVWMHNQMINIDNQKMSKSLGNVLWAKDLIET-- 283 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------WPQT 340 V + ML THYR P++FT + LT + + K + Q Sbjct: 284 -----LGCNVFKWLMLSTHYRNPLNFTEEVLTSVKKEVEKVENVLKQTSLYLQVQHYQQE 338 Query: 341 STSKGIIDPAVLSALYNDLNT-------VSAIQALHKLARESTKNHDLLP----IFNASA 389 SK +D V AL +DLNT ++ ++ L++ R K++ ++ Sbjct: 339 EYSKETVDTMV-EALSDDLNTSLALTQILNQVKVLNQSMRVKDKDNQVISREYQTLIQML 397 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 ++G + L+ N + EK ++E+ K F AD +R QL+ +G I Sbjct: 398 DVMGFVHEMKQLSDNDIVLYEKWLEEK----ANKNFDKADELRGQLQMRGII 445 >gi|87124845|ref|ZP_01080693.1| cysteinyl-tRNA synthetase [Synechococcus sp. RS9917] gi|86167724|gb|EAQ68983.1| cysteinyl-tRNA synthetase [Synechococcus sp. RS9917] Length = 506 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 159/414 (38%), Positives = 211/414 (50%), Gaps = 62/414 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 ++ NTL R++ F+ + + +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 3 LRFTNTLSRRMEPFRPLKEGQVSIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TDIDDKI+ RA E S+ ++ +N F D L L P Sbjct: 61 --AVTFVQNFTDIDDKILNRAADEGSSM------EAVSERNIAAFHADMEALGILRPDRM 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 PRAT + + LI + G AY A+ ++ F YG S R + EQ+ RV Sbjct: 113 PRATRCLDAIRDLIGELEAKGAAYSADGDVYFAVMKHAGYGKLSGRDLGEQQTNAEGRVA 172 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + P EP + SPWG GRPGWHIECSAM LG DIH GG Sbjct: 173 DAEEARKQHPFDFALWKGAKPGEPSFPSPWGAGRPGWHIECSAMVREELGDTIDIHLGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A ++ A +W+HNG +N+ G KMSKS GNF TI LLE+ Sbjct: 233 DLVFPHHENEIAQSEAASG-QELARLWLHNGMVNVGGEKMSKSLGNFTTIRALLES---- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----------------LLSKWPQTS- 341 A +RL +L HYR+P+DF+ L A WP + Sbjct: 288 --GLSAMTLRLFVLQAHYRKPLDFSSDALEAASSGWKGLNAALNLGTGHGTALGWPNAAP 345 Query: 342 --------------TSKGIIDPAVL--------SALYNDLNTVSAIQALHKLAR 373 KG DP L +A+ +DLN+ A+ + +LAR Sbjct: 346 LPKGAVVEGSIGLLDQKGSTDPDPLLGLRQRFIAAMDDDLNSSGALAVVFELAR 399 >gi|333029518|ref|ZP_08457579.1| cysteinyl-tRNA synthetase [Bacteroides coprosuis DSM 18011] gi|332740115|gb|EGJ70597.1| cysteinyl-tRNA synthetase [Bacteroides coprosuis DSM 18011] Length = 491 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 177/496 (35%), Positives = 260/496 (52%), Gaps = 64/496 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++ IYNTL RK F + ++ +YVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MDHQLTIYNTLSRKKELFVPLHAPHVGLYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ KD Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEELE-PME-----VVQYYLNRYHKD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEELNVLPPSIEPHASGHIIEQIQLVKEILKNGYAYESQGSVYFDVAKYDKKYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K+NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRDLDGQSEKRNPADFALWKAAQPEHIMRWPSPWSDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DLIFPHHE EIAQS A + + W+HN + + G KM KS GNF Sbjct: 233 YLGNHFDIHGGGMDLIFPHHECEIAQS-VASQGNDMVHYWMHNNMITVNGTKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+ + + + + +++ IR +L HYR +DF+ ++RL +A L Sbjct: 292 ITLEQFFDGSHELLLQAYSPMTIRFFILQAHYRSTVDFSNEALIASEKGLERLFDAVHRL 351 Query: 335 SKWPQTSTS----KGIIDPAVLSALYNDLNTVSAIQALHKLAR----------------- 373 + TS KG + + A+ +DLNT I L A+ Sbjct: 352 DALKVSKTSDVDVKG-LKAKCIEAMNDDLNTPIVISHLFDGAKIINNIFAGNNTISAEDL 410 Query: 374 ESTKNHDLLPIFNASAHILGIEV---CKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 E K+ L +F+ ILG++ S ++ L+++RLI + K ++++D Sbjct: 411 EELKDTFNLFLFD----ILGMKTENSSSGDREAAYSKVVDMLLEQRLIAKQNKDWATSDQ 466 Query: 431 IRKQLESKGFILEDYK 446 IR +L S GF ++D K Sbjct: 467 IRDELTSLGFEIKDTK 482 >gi|317474598|ref|ZP_07933872.1| cysteinyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA] gi|316909279|gb|EFV30959.1| cysteinyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 491 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 176/492 (35%), Positives = 257/492 (52%), Gaps = 54/492 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL+RK F + ++ MYVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MEQQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MDALNVLSPSIEPHASGHIIEQIALVKEIMKNGYAYESEGSVYFDVAKYNKDHHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ +R + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTSRELDGQSEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + W+HN L + G+KM KS GNF Sbjct: 233 YLGENFDIHGGGMDLIFPHHECEIAQS-VASQGHDMVHYWMHNNMLTVNGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ EL T +++ IR L HYR +DF+ + L AE L++ Sbjct: 292 ITLEELFTGTHPMLEQAYSPMTIRFFTLQAHYRSTVDFSNEALQAAEKGLARLMDAVHGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHK--------LARESTKNHDLLP 383 I PA S A+ +DLN+ I L + LA T + L Sbjct: 352 DKITPAATSTVDAKALRAKCYEAMNDDLNSPIVIAHLFEGAKMVNNILAGNDTITAEDLK 411 Query: 384 IFNASAHILGIEV--CKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H+ ++ KE N ++ L++ER+ K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLKEDNASNAEREAAFGKVVDMLLEERMKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 472 TALGFEIKDGKD 483 >gi|296122689|ref|YP_003630467.1| cysteinyl-tRNA synthetase [Planctomyces limnophilus DSM 3776] gi|296015029|gb|ADG68268.1| cysteinyl-tRNA synthetase [Planctomyces limnophilus DSM 3776] Length = 517 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 174/533 (32%), Positives = 255/533 (47%), Gaps = 97/533 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL R+ FQ ++P ++MY+CGPTVY AHIG+ ++FD + R L Y + Sbjct: 3 LRVYSTLSRQKETFQTVEPGKVKMYLCGPTVYKPAHIGHMVGPVIFDTVKRYLAYSGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD+DDK+I +A ++ ++ + + T + + + + H P Sbjct: 62 -VTFVVNITDVDDKLINKANEKGMTV------EALAKQMTDDYFDNLKLMGVDSIDHFPY 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI M+ +I ++ G+AY N ++ F + +YG SRR ++E GTR Sbjct: 115 ATDHIGDMLDMIGKLVEKGYAYPLNGDVYFRCTKDEDYGKLSRRSLEEMLTGTRAESMGG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF LWK S P EP W+SPWG+GRPGWHIECSAMS LG DIHGGGLDL+FPH Sbjct: 175 KESPADFALWKGSKPGEPAWDSPWGKGRPGWHIECSAMSKKILGDSIDIHGGGLDLMFPH 234 Query: 245 HENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKM-------SKSNGNFITINELLETK 295 HENE+AQ SC A W+HNG + G+ K + +L ++ Sbjct: 235 HENELAQSESCTGHPF---ARYWMHNGLMQASGQAGKVGGQHDKKGDAESQIAGKLAGSQ 291 Query: 296 KFGGRSWPAPV--------IRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------- 337 G S V +R +L THYR PIDF+++R+ E L + Sbjct: 292 --GAESVKTAVFAHHHPETVRFFLLATHYRSPIDFSLERIAETGKSLEGFFRLFELYERL 349 Query: 338 -----------PQTSTSKGI----------------IDPAVLSALYNDLNTVSAIQALHK 370 + S SK I + L A+ +D NT A+ L + Sbjct: 350 TKKNFYSLIPAAKRSDSKPITAETPDQQAFATELNGLKDRYLDAMDDDFNTGGAVGLLFE 409 Query: 371 LAR-------------ESTKNHDLLPIFNASAHI----LGIEVCKEHLNKNISI------ 407 + R + DL + +A + L + V +E K S Sbjct: 410 MRRVINGFISEKKLETGAGSAADLQLLTDAMTLVRELGLLLGVFREPRAKESSADDGLLD 469 Query: 408 -AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ ++Q R K K F+ AD IR +L ILED PD T WK+ Sbjct: 470 GLMQLIIQIRADARKSKNFAVADLIRNKLTELKLILED--RPDG----TLWKK 516 >gi|76799247|ref|ZP_00781419.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 18RS21] gi|76585400|gb|EAO61986.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 18RS21] Length = 320 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 137/338 (40%), Positives = 199/338 (58%), Gaps = 27/338 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEY----- 56 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C V Y+ N TD+DDKII+ A + + K F++D L T Sbjct: 57 CGYQVNYISNFTDVDDKIIKGAAEAGMDT------KSFSDKFISAFMEDVAALGVKPATK 110 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 PR +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G RV Sbjct: 111 NPRVIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRV 170 Query: 180 P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG Sbjct: 171 DGEGEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS GNFIT++++L Sbjct: 231 DLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML----- 283 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 +S VIR + YR+P++FT + + +AE+ L+ Sbjct: 284 --KSVDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNLN 319 >gi|16331016|ref|NP_441744.1| cysteinyl-tRNA synthetase [Synechocystis sp. PCC 6803] gi|2500966|sp|P74330|SYC_SYNY3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1653511|dbj|BAA18424.1| cysteinyl-tRNA synthetase [Synechocystis sp. PCC 6803] Length = 483 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/487 (34%), Positives = 244/487 (50%), Gaps = 63/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y++L R Q + P + MY CG TVYD+ H+G+AR I +D++ R L++ E Sbjct: 3 LRLYDSLTRAKQPLQPLHPGLVTMYCCGITVYDYCHLGHARTCITWDLVRRYLQWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RA E ++ ++ K + +D L PR Sbjct: 62 -VRYVQNFTDIDDKILKRAVDESSTM------EAVSEKFIAAYFEDMEALGVQPADLYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV--- 179 AT+ + + LI + G+AY + ++ + + YG S R++++ + G RV Sbjct: 115 ATHTLDGIKRLIAELEAKGYAYPSGGDVYYSVRNFDGYGKLSGRRLEDLQAGASGRVTVA 174 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P+ K++P DF LWK + P EP WESPWG+GRPGWHIECSAM +LG+ D+H GG Sbjct: 175 DPDGAQKQDPFDFALWKSAKPGEPAWESPWGKGRPGWHIECSAMVREFLGETIDLHVGGN 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + A W+HNG + ++G KMSKS GNF TI LL+T Sbjct: 235 DLIFPHHENEIAQSEAVTG-QPLAQYWLHNGMVKVDGEKMSKSLGNFTTIRALLKTVD-- 291 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQTSTSKGI--------- 346 IRL +L HYR+P+DFT + T L + Q G Sbjct: 292 -----PMAIRLLVLQGHYRKPLDFTETAIAAATNGWHTLREGLQFGYDYGGDFGWELAFT 346 Query: 347 -IDP-------AVLSALYNDLNTVSAIQALHKLAR-------------ESTKNHDLLP-- 383 + P A A+ +D N + + +LA+ + + DLL Sbjct: 347 PLGPDANQWTVAFQEAVDDDFNFAGGLAVMFELAKHLRSEGNKLKFEGSTPADLDLLQTQ 406 Query: 384 --IFNASAHILGIEVCKEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 + A ILG+ + E + N IE+LV +R K K ++ D +R L+ Sbjct: 407 WITLVSLAEILGLSINPESQSSNDNGLTDGDIEQLVAQRTQARKDKNWAEGDRLRDVLQE 466 Query: 438 KGFILED 444 G L D Sbjct: 467 AGITLVD 473 >gi|237784960|ref|YP_002905665.1| cysteinyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385] gi|259511827|sp|C4LH17|SYC_CORK4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|237757872|gb|ACR17122.1| Cysteinyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385] Length = 473 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 247/479 (51%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+++ R++ +F + +Y+CG TV HIG+ R + FD+L L Y + Sbjct: 3 LRIFDSASRQLRDFVPLREGRASVYLCGATVQSAPHIGHLRSGVAFDILRNWLTYMGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A EH N + ++F +L P+ +P Sbjct: 62 -VAFIRNVTDIDDKILNKA-AEH-----NRPWWEWAATYEREFQWAYDQLGVTPPSLEPH 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+MI +Q II GH Y + + S+P+YGS S +K+DE G Sbjct: 115 ATGHVPEMIEYMQRIIDAGHGYAVDGNVYLSPMSLPDYGSLSGQKLDEMDQGESAGTG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W++PWGRGRPGWH+EC+ M++ YLG FDIH GGLDL FPH Sbjct: 173 KRDPRDFTLWKAAKPGEPSWDTPWGRGRPGWHLECTTMATKYLGAEFDIHAGGLDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG++ + G KMSKS GN +++ LL+ + Sbjct: 233 HENEIAQAHAAG--DGFARYWMHNGWVTMAGEKMSKSLGNVLSVPNLLQIVR-------- 282 Query: 305 PV-IRLAMLMTHYREPIDFTVQRLTEAEI---LLSKWPQTSTS----------KGIIDPA 350 PV +R + HYR ++F+ L EA L K+ ++S + + A Sbjct: 283 PVELRYYLGSAHYRSMLEFSEDALREAAAGYRRLEKFVHAASSVAGKNDRTLGRSEVTDA 342 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---------------HILGIE 395 A+ +D+ +A+ +HK+ R S D ++ A +LG++ Sbjct: 343 FTDAMNDDIGVPAALAEVHKVVRSSNSRLDAARRGDSDAVESVVSAGEQVRAMLGVLGVD 402 Query: 396 VCKEHLNKNIS------IAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILED 444 E + + A++ LV+ L + K +++AD +R +L + G ++ D Sbjct: 403 PLDEKWQEIAAESGAEHDALDTLVRAELDIRAKARAEKDWATADAVRDRLAAAGIVVTD 461 >gi|224536743|ref|ZP_03677282.1| hypothetical protein BACCELL_01619 [Bacteroides cellulosilyticus DSM 14838] gi|224521659|gb|EEF90764.1| hypothetical protein BACCELL_01619 [Bacteroides cellulosilyticus DSM 14838] Length = 491 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 255/492 (51%), Gaps = 54/492 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ A I ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PMEVAQYYIN-----RYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L+P+ +P A+ HI + I L++ I+ +G+AY + + FD +YG S Sbjct: 113 MEALNVLSPSIEPHASGHIIEQIELVKEILKNGYAYVSEGSVYFDVEKYNKDYHYGKLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQAEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHAECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS A + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQS-VASQGNDMVHYWMHNNMITINGQKMGKSYGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 I ++E T K +++ IR +L HYR +DF+ + L AE L++ Sbjct: 292 INLDEFFNGTHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLTRMMDAVNGL 351 Query: 345 GIIDPAVLS-------------ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLP 383 I P+ S A+ +DLNT I L AR T D L Sbjct: 352 EKITPSATSSVDVKAVREKCYEAMNDDLNTPIVIAHLFDGARMINNIIAGNDTITADDLK 411 Query: 384 IFNASAH-----ILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + H ILG++ + ++ L++ER+ K ++++D IR +L Sbjct: 412 ELKETFHLFCFDILGLKEENNSNEEREVAFGKVVDMLLEERMKAKANKDWATSDKIRNEL 471 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 472 TALGFEIKDGKD 483 >gi|14325506|dbj|BAB60409.1| tRNA synthetase Cys [Thermoplasma volcanium GSS1] Length = 472 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 244/460 (53%), Gaps = 40/460 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R++ EF + + ++VCGPTV D HIG+AR I FD + + L+ V Sbjct: 21 IYNTLTRRLQEFNEMHRGRVNLFVCGPTVQDHFHIGHARTYIFFDAVAKFLKL--EGYSV 78 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y++NITDIDDKII RA++ I ++ I S +F +D RL + RAT Sbjct: 79 FYLQNITDIDDKIINRAKE--MGIEPSEVAKIYFS----EFQEDMKRLKVDSVNFFARAT 132 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I +++ I ++ G+AYE ++ + F+ +YG S + +D+ G RV +K+ Sbjct: 133 LYIDEIVSQISRMMEKGYAYETDDGVYFEVRKFKDYGELSNQSLDQIIAGYRVAVNENKR 192 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF+LWK+ EP W SPWG GRPGWHIE +A++ Y G +DIHGGG DLIFPHHE Sbjct: 193 NPEDFVLWKKKKAGEPSWPSPWGEGRPGWHIEDTAITETYFGDEYDIHGGGSDLIFPHHE 252 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 EIAQ A+ WIH G +N+ KMSKS NFITI ++L + + Sbjct: 253 AEIAQMRSISGKRYLAHYWIHTGMININKEKMSKSLKNFITIRDIL-------KDYRPED 305 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLS---------KWPQTSTSKGIIDPAVLSALY- 356 +R A+L +YR I+F+ + + E++ L+ ++ S + I +V+S + Sbjct: 306 LRFAILNANYRTQIEFSKELMEESKKLIDYINDTYRKLEYVNGSGNFKIDVNSVISEMRS 365 Query: 357 ---NDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHILGIEVCKEHLNKN 404 ND + S I L + E +N +L ++ LGI K+ ++K Sbjct: 366 LAENDFDFHSVIVKLLAITGEINRNFEGINKEVAEELKKVYLWVDTFLGILEQKKEVSKG 425 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I ++ LV+ R + K K F +D IR L+ G +ED Sbjct: 426 I---VDDLVELRTRMRKEKNFLISDAIRDVLKKNGIHIED 462 >gi|260435038|ref|ZP_05789008.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 8109] gi|260412912|gb|EEX06208.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 8109] Length = 493 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/322 (44%), Positives = 188/322 (58%), Gaps = 19/322 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL R+ F + P +Y CG TVYD H+G+AR I +DVL R L + E Sbjct: 3 LRLTNTLTRRTEPFTPLTPGKASIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWRGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKI++RA +E N +++ ++ +N F +D L L P PR Sbjct: 62 -VTFVQNFTDIDDKILKRAGEE------NSSMTEVSERNIASFHQDMDALGILRPDRMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP-- 180 AT + + LI + G AY A ++ F YG S R + EQ+ RV Sbjct: 115 ATQCLDGIRALIGELEAKGAAYSAEGDVYFAVMKHAGYGKLSGRDLSEQQDNAAGRVADA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K++P DF LWK + P EP + SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EEARKQHPFDFALWKGAKPGEPSFPSPWGEGRPGWHIECSAMVRAELGDTIDIHLGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A + A +W+HNG +N+ G+KMSKS GNF TI LLE+ Sbjct: 235 VFPHHENEIAQSEAATG-QDLARVWMHNGMVNVGGQKMSKSLGNFTTIRALLESGV---- 289 Query: 301 SWPAPVIRLAMLMTHYREPIDF 322 A +RL +L HYR+P+DF Sbjct: 290 --SAMTLRLFVLQAHYRKPLDF 309 >gi|317507827|ref|ZP_07965528.1| tRNA synthetase class I catalytic domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253869|gb|EFV13238.1| tRNA synthetase class I catalytic domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 477 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 241/472 (51%), Gaps = 47/472 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + EF + + +Y+CG TV H+G+ R +VFDVL R L+ + Sbjct: 3 LRLYDTRTRVVREFHPLREGQVSIYLCGATVQGRPHVGHLRSAVVFDVLRRWLQAKGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RN+TDIDDKI+ +A + + + + F RL L P+ +PR Sbjct: 62 -VLFARNVTDIDDKILVKAAE------AGRPWWEWAATHERAFASAYDRLGVLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ I+ +I GHAY ++ FD S+P YG S ++D+ G E Sbjct: 115 ATGHITQMVDCIERLIERGHAYTGAGDVYFDVRSLPEYGKLSGHQLDDVHQGESAAEG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W +PWG GRPGWH+EC+AM++ YLG FDIH GG+DL+FPH Sbjct: 173 KRDPRDFTLWKGAKPGEPWWPTPWGPGRPGWHLECTAMATTYLGSEFDIHCGGMDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQ+ A + A W+HNG+L+L G KMSKS GN +++ ELL + Sbjct: 233 HENELAQARGAG--DSFARFWLHNGWLSLGGEKMSKSLGNVLSLEELLTAVR-------P 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSAL 355 +R + HYR +F+ + + EA + + + G + SAL Sbjct: 284 QELRYYLGCAHYRSTQEFSFEAVIEAAVAYKRLESFVLRAADEYGEIALGEVTGDFASAL 343 Query: 356 YNDLNTVSAIQALHKLARES-TKNHDLLP-------IFNASAHILGIE-----VCKEHLN 402 +DL A+ L + A++ T+ + P A +LG + Sbjct: 344 DDDLAVPKALAELQRHAKQGNTELAERKPGAAATAASVRAMLAVLGCDPFDPIWASGREE 403 Query: 403 KNISIAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILEDYKNPDN 450 K +A++ LV+ L + K +++AD +R +L G + D PD Sbjct: 404 KAALVALDVLVEAELSRREAARADKDWATADEVRDRLRKAGIDVTD--GPDG 453 >gi|145596731|ref|YP_001161028.1| cysteinyl-tRNA synthetase [Salinispora tropica CNB-440] gi|145306068|gb|ABP56650.1| cysteinyl-tRNA synthetase [Salinispora tropica CNB-440] Length = 471 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 173/474 (36%), Positives = 249/474 (52%), Gaps = 52/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T + +F + + +Y+CG T+ HIG+ R + +DVL R L + E Sbjct: 3 LRLYDTATHSVRDFVPREAGKVGIYLCGLTLQAPPHIGHLRSGVNYDVLRRWLLAHGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A + ++ I N + L L PT++PR Sbjct: 62 -VRFIRNLTDIDDKILVKA------VELDLPYWSIAYANELKLTAAYRALNVLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT HIP+M LI +I GHAY A + ++ FD S P YG+ S + + + P+ Sbjct: 115 ATGHIPEMQQLIAELIDAGHAYPATDGSGDVYFDVHSWPAYGALSNQSPGDMQPAGDAPD 174 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF LWK + P EP W SPWGRGRPGWHIECSAM YLG FDIHGGGL Sbjct: 175 RC-KRDPRDFALWKGAKPGEPADAYWPSPWGRGRPGWHIECSAMCWRYLGSEFDIHGGGL 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A A W+H+G LN+ G KM KS GN + +L G Sbjct: 234 DLTFPHHENELAQSQAAGL--PFARYWVHHGLLNIGGAKMGKSCGNTL---DLTYVDSLG 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEIL---LSKWPQTSTSK------GIID 348 R PV +R HYR ID++ L EA + + + Q ST + G++ Sbjct: 289 VR----PVELRYYYTAAHYRSVIDYSEDALREAAVAYRRIEGFVQRSTERVGAGQPGVVP 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARES----TKNHDL-----LPIFNASAHILGIEVCKE 399 A +A+ +DLNT +A+ LH+ R+ T D+ L A ILG++ Sbjct: 345 AAFAAAMDDDLNTSAALAVLHETVRDGNTALTGGDDVTVRTALGQVRAMLDILGVDPLDP 404 Query: 400 HLNK-----NISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ ++ LVQ +R K +S+AD IR QL+ G ++ED Sbjct: 405 AWSAGGGTDDLGAVVDSLVQLALEQRAQARSRKDWSAADAIRDQLKQAGVVVED 458 >gi|220911630|ref|YP_002486939.1| cysteinyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] gi|254765174|sp|B8HCR7|SYC_ARTCA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219858508|gb|ACL38850.1| cysteinyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] Length = 488 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 238/488 (48%), Gaps = 62/488 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T ++ F + +Y CG TV H+G+ R I FD L R L + G + Sbjct: 3 LRFYDTASAEVRNFVPLVAGRASLYYCGATVQGMPHVGHIRSAIAFDQLTRWLTHR-GLR 61 Query: 65 CVTYVRNITDIDDKIIERAR-------QEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 VT VRN+TDIDDKI+ ++ Q P + + + Q+F+K L Sbjct: 62 -VTVVRNVTDIDDKILAKSEASFASGFQPEPGEIPGEEWWALAYRYEQEFLKAYDALGVS 120 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQK 174 PT++PRAT HIP+M LIQ +I GHAY A + ++ FD S YG+ +R+ ID+ + Sbjct: 121 RPTYEPRATGHIPEMHALIQQLIDRGHAYPALDDSGDVYFDVRSWSKYGALTRQNIDDMQ 180 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 + K++P DF LWK S EP W SPWG GRPGWH+ECSAM + YLG F Sbjct: 181 AAADADPR-GKRDPRDFALWKGSKEGEPATASWASPWGAGRPGWHLECSAMVTKYLGTEF 239 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGGLDL FPHHENE+AQS A AN W+HNG + EG KMSKS GN I+ E+ Sbjct: 240 DIHGGGLDLRFPHHENEMAQSQAAG--HPFANFWMHNGMVTYEGEKMSKSIGNTISPAEM 297 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE--------ILLSKWPQTSTS 343 LE V+R + HYR +D+ L EA L + T Sbjct: 298 LELAS-------PRVVRYYLGQAHYRSILDYRPTSLQEAAAAVERIDGFLAKAVARFGTD 350 Query: 344 KGIID----------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH--- 390 G ++ A +A+ +DLN A+ ALH+ R N L + SA Sbjct: 351 FGFVEGDYGPSTGAVEAFYAAMDDDLNVPRALAALHETVR--AGNTALADGDDDSARKAM 408 Query: 391 --------------ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 + G E + +++ +E + R K +S++D IR L Sbjct: 409 NAVVIMTDVLGLNAVAGSEKTSTREAEALAVLVEAQLAARATARAEKDWSASDAIRDTLN 468 Query: 437 SKGFILED 444 G ++ED Sbjct: 469 EAGVVVED 476 >gi|150399135|ref|YP_001322902.1| cysteinyl-tRNA synthetase [Methanococcus vannielii SB] gi|166200152|sp|A6UP68|SYC_METVS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150011838|gb|ABR54290.1| cysteinyl-tRNA synthetase [Methanococcus vannielii SB] Length = 475 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 239/477 (50%), Gaps = 53/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ + F+ ++ +++YVCGPTVYD HIG+ R + FD++ R L + Sbjct: 2 LRIYNTITKSEEVFKTLNNEEVKIYVCGPTVYDETHIGHGRTYVSFDIIRRYLEHI--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RA + +N I+ K + F+ D L P+ Sbjct: 60 SVKLVINFTDIDDKIINRA------LNLNVTPKKISEKYIEIFLNDMKTLNVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +IP++I I +I G AY+ ++ + F+ +YG S ++ ++ K Sbjct: 114 VTENIPEIISFIDKLIEKGFAYKTDSGVYFEIEKFKDYGKLSNINLENLISEDKLESKSE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKN DF LWK EP W+SP+G GRPGWHIECS MS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNRFDFALWKNKKSGEPYWKSPFGDGRPGWHIECSVMSMKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNF+TI+E+ + + Sbjct: 234 HENEIAQSSAYSG-KNWVNYWVHTGFVMVNGEKMSKSLGNFVTISEI-------SKKYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--STSKGIIDPA------------ 350 V+RL + HY+ PID+T + + A+ L K S + +P Sbjct: 286 EVLRLFFIQRHYKSPIDYTEESMEHAKASLQKLYNVIESVRIALENPVNSVWDENEAFFY 345 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNASA 389 A+ +D N+V+A++ + +++ TK + L F Sbjct: 346 NVLKNSKINFYRAMDSDFNSVNALKTVFEVSNSVTKYLSVSKSPNVALLIKTLDFFKNVG 405 Query: 390 HILGIEVCKEHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I G+ + + N+ I+ LV R L K + ++D IR L+ G+ +ED Sbjct: 406 EIFGLFEGYFYKSSNVKEESLIKFLVDLRDDLRSKKNYETSDKIRDGLKELGYQIED 462 >gi|116328522|ref|YP_798242.1| cysteinyl-tRNA synthetase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331250|ref|YP_800968.1| cysteinyl-tRNA synthetase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281004|sp|Q04SB0|SYC_LEPBJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|122283690|sp|Q050D6|SYC_LEPBL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116121266|gb|ABJ79309.1| Cysteine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124939|gb|ABJ76210.1| Cysteine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 474 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 170/493 (34%), Positives = 246/493 (49%), Gaps = 57/493 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YG 62 +I+ YN+L K +F +P + +Y CGPTVY+FAHIGN R + DVL R L+ YG Sbjct: 3 EIQFYNSLSGKKEKFSPANPHRVTVYSCGPTVYNFAHIGNLRAFLFVDVLRRSLKLLGYG 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V NITDIDDKII SI +I T+ T+ F +D ++ H Sbjct: 63 ---VDMTMNITDIDDKII------RDSIASQKSIQEFTTPWTEAFFEDLKTVSAEFLEHY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PE 181 P+AT IP+MI +IQ + G YE + + F YG S+ K GTR + Sbjct: 114 PKATESIPEMIQIIQRLQNQGLVYEKDENLYFSIQKFEGYGKLSKIDTSGMKTGTRYDTD 173 Query: 182 KYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +Y K++ DF+LWK E W++ G GRPGWH+ECSAM G DIH GG+DL Sbjct: 174 EYDKEDVRDFVLWKSPKRKGEASWKTSVGTGRPGWHLECSAMIRKIYGSGVDIHTGGVDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A E W+H+ L +EG+KMSKS GNF T+ +L+ G+ Sbjct: 234 LFPHHENEIAQSEGAFPEESFVRTWLHSEHLLVEGQKMSKSKGNFYTLRDLV------GQ 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGI-IDPA---- 350 IR ++ HYR ++F+ R+ EA + K ++ + IDP+ Sbjct: 288 GLDPKAIRFLLISAHYRSKLNFSTDRIAEASANIRKIQNCLDRLLDIAQNVKIDPSYSFN 347 Query: 351 ----------VLSALYNDLNTVSAIQALHKLAR------ESTKN-------HDLLPIFNA 387 +L +DLN A+ + + + +S KN ++ + I Sbjct: 348 DELTLRWKKEFEESLADDLNVSKALAVVFESLKTINAFLDSKKNRVAEISANEFIQILAY 407 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ + + I I+ L+QER K K F+ +D IR QL ++G ++ED K+ Sbjct: 408 YDRIFGVLNFESQKDPLIDSEIDSLIQERQTARKNKDFARSDAIRDQLLAQGILIEDTKD 467 Query: 448 PDNGQRMTRWKQK 460 RW++K Sbjct: 468 G------IRWRRK 474 >gi|320450390|ref|YP_004202486.1| cysteinyl-tRNA synthetase [Thermus scotoductus SA-01] gi|320150559|gb|ADW21937.1| cysteinyl-tRNA synthetase [Thermus scotoductus SA-01] Length = 481 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 261/490 (53%), Gaps = 67/490 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+TL+R +F P ++ +YVCGPTVY H+G+AR IV+DVL R L + G + Sbjct: 3 LRIYDTLQRSKVDFTPATPGHVGIYVCGPTVYSDPHLGHARGPIVYDVLRRYL-LHLGYR 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V NITD+ +DKI RA+ E P+ + K T + T L Sbjct: 62 -VRFVSNITDVGHLTDDADQGEDKIERRAKLERLE-PME-----VAEKYTWSYFDAITAL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P+ PRA+ HIP+ I L + ++ G AYE + F + P YG S ++++E + Sbjct: 115 NVLRPSIAPRASGHIPEQIELTERLLKLGFAYERKGSVYFRVRAFPEYGKLSGKRLEELR 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKV 230 G RV + K++P DF LWK + EPG W+SPWG G PGWHIEC+AMS YLG+ Sbjct: 175 AGARVEVREEKEDPLDFALWKAA---EPGHIMRWKSPWGEGYPGWHIECTAMSLKYLGEG 231 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIH GG+DL FPHHE EIAQ+ A + A W+H+ + LEG KM+KS GN + +++ Sbjct: 232 FDIHAGGIDLQFPHHECEIAQAEAAGY--RFARHWMHHNHVLLEGEKMAKSTGNLVLLHD 289 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTSKGI 346 LL+ + +R +L THYR P+DFT + L A+ LL + + T Sbjct: 290 LLKAHE-------PMALRFYLLQTHYRSPMDFTWEGLEAAKRGYARLLQAYREVRTRLNA 342 Query: 347 IDPAV---------------LSALYNDLNTVSAIQA-------LHKLARESTKN--HDLL 382 P + L A+ +DL+T A+ A L+KL E+ ++ Sbjct: 343 AHPGITPELERALDALEKDFLEAIEDDLSTPEALAAFFTFLPELNKLLPEAKRDTLRRTA 402 Query: 383 PIFNASAH-ILGI---EVCKEHLNK-NISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 +F+ ILG+ V +E ++ + + L++ R + K ++ +D IR++L+S Sbjct: 403 QVFHTLGEGILGLFPERVLEEKVSGPLLEGLVALLLELREEARRAKDYAKSDLIRERLKS 462 Query: 438 KGFILEDYKN 447 G I+ED K Sbjct: 463 LGIIVEDTKE 472 >gi|297621589|ref|YP_003709726.1| Cysteinyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] gi|297376890|gb|ADI38720.1| Cysteinyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] Length = 484 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 160/479 (33%), Positives = 255/479 (53%), Gaps = 58/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K +NT+ R F+ I + + +Y CGPTVY+FAHIGN R + D+L R L+++ E Sbjct: 15 LKFFNTITRSKDPFKPISGNRVSLYTCGPTVYNFAHIGNYRTYMFEDLLRRTLKFFGYE- 73 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N+TD+DDK I A +++ S+ DA T + F +D L H P Sbjct: 74 -VEQVMNLTDVDDKTIRGATEQNVSL---DAY---TKPFKEAFFEDIRTLNIEPAEHYPA 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT++I QMI +I+ ++ G AY A+ + + + YG S KIDE K G Sbjct: 127 ATDYIDQMIAMIEKLLEKGAAYRGADGSVYYAIETFKRYGCLSHLKIDELKSGASDRVAS 186 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 ++Y K N ADF+LWK P G W+SP+G+GRPGWH+ECS M+ LG+ D+H GG Sbjct: 187 DEYEKDNVADFVLWKSYDPERDGKIYWDSPFGKGRPGWHLECSTMAMQILGETIDLHCGG 246 Query: 238 LDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 +D +FPHHENEIAQS C+ + +W+H+ L +E +KMSKS GNF T+ +LLE Sbjct: 247 VDNMFPHHENEIAQSEACSG--QTFVKMWLHSEHLIIENKKMSKSLGNFFTLRDLLE--- 301 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTSTSK------ 344 + + +R +L THY+ ++FT + L + L + Q T + Sbjct: 302 ---KGYSGKQVRYILLQTHYKTQLNFTFEGLEAVKHSLQRLQDFVYRLQGVTGRETHHAL 358 Query: 345 ----GIIDPAVLSALYNDLNTVSAIQALHKLAR--------------ESTKNHDLLPIFN 386 + L +DLN A+ +L++L R ++ + +LL FN Sbjct: 359 DALLDQALLGFANGLADDLNISVALASLYELVRDVNGLIDQGKLGEGDANRVLELLKRFN 418 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + ++ E+ +E + ++ A++ +R+ + K +S AD +R ++S+G+++ED+ Sbjct: 419 SVLGVIDFEMKEESIPDDLIQALD----DRIAARQNKDWSEADRLRDYIQSRGYVIEDF 473 >gi|146304825|ref|YP_001192141.1| cysteinyl-tRNA synthetase [Metallosphaera sedula DSM 5348] gi|187631639|sp|A4YIG5|SYC_METS5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145703075|gb|ABP96217.1| cysteinyl-tRNA synthetase [Metallosphaera sedula DSM 5348] Length = 465 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 250/478 (52%), Gaps = 57/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL +++ F+ +P+ ++MYVCGPTVYD HIG+ R + FD + R LR Sbjct: 1 MQVFNTLGKRLQSFEPHEPNTVKMYVCGPTVYDEVHIGHGRTFVAFDAMSRYLRV--KGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V+NITDIDDKII +AR+ + + + ++ ++ +++ L H P+ Sbjct: 59 NVVRVQNITDIDDKIINKARE------LGKSWNEVSEYYSKSYLEHIGALKVKIDMH-PK 111 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I +Q +I GHAY AN + FD + P YG S K +E G + ++ Sbjct: 112 VTTHIKEIIDFVQRLIDSGHAYVANGSVYFDVDTYPGYGELSNVKKEEWDQGEEIVKE-- 169 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK P EP WESPWG+GRPGWHIECS MS+ YLG DIHGGG+DL+FPH Sbjct: 170 KRHPYDFALWKAYKPGEPYWESPWGKGRPGWHIECSTMSTRYLGTKIDIHGGGMDLVFPH 229 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ+ W+H FL + KMSKS GN + + E L K+G Sbjct: 230 HENERAQTESLTG-STWVKYWMHVAFLTIRKEKMSKSKGNIVPLKEAL--SKYG-----P 281 Query: 305 PVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGI------ID 348 +R L + YR PI++ ++QRL +A +L K Q + + Sbjct: 282 STLRYWFLSSQYRNPIEYSEEILEQSSRSLQRLKDAISVLRKIIQKGPAHYAKEEDVKVQ 341 Query: 349 PAVLSA-------LYNDLNTVSAIQALHKLA----RESTKNHDLLPI---------FNAS 388 ++ A + ND +T +A+ ++H++A + + D+ FN Sbjct: 342 EEIVRAISRFDEHMENDFDTSNALTSIHEIASIVFSKLQYSEDVFGALIALDGFRKFNEV 401 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ E E L++ ++ I+ +++ R L K + + +D IR L G + D K Sbjct: 402 FAVMDEEFSAE-LDR-LTKVIDAVIEVRNYLRKKQMYDLSDQIRDILSRSGVKILDSK 457 >gi|296118937|ref|ZP_06837510.1| cysteine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306] gi|295968035|gb|EFG81287.1| cysteine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306] Length = 473 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 164/471 (34%), Positives = 246/471 (52%), Gaps = 52/471 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + +F+ I P + +Y+CG T HIG+ R + FD++ R L + Sbjct: 14 LRIFDTATRSLRDFEPITPGHASIYLCGATPQAKPHIGHLRSGVAFDIVRRWLMAQGLD- 72 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A EH N S ++F K L L P+ +PR Sbjct: 73 -VAFVRNVTDIDDKILNKA-AEH-----NRPWWEWVSTYEREFTKAYNTLGVLPPSVEPR 125 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSFSRRKIDEQKMGTRV 179 AT +PQM+ +Q +I G AY + + FD ++ N YGS S ++++ + G Sbjct: 126 ATGFVPQMVEYMQRLIDRGFAYASEGSVYFDVAAWVNAEGSDYGSLSGNRVEDMEQGE-- 183 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K++P DF LWK + P EP W +PWG GRPGWH+ECSAMS++YLG FDIHGGGLD Sbjct: 184 TDVIGKRSPQDFALWKAAKPGEPSWPTPWGAGRPGWHLECSAMSTYYLGSSFDIHGGGLD 243 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A + ANIW+HN ++ + G KMSKS GN + ++ LL+ + Sbjct: 244 LQFPHHENEIAQSHAAG--DGFANIWMHNHWVTMAGEKMSKSLGNVLAVDNLLDIVR--- 298 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAVL 352 +R + HYR ++++ LTEA E L+++ + G Sbjct: 299 ----PQELRYYLGSAHYRSVLEYSEGALTEAAAGYRRIEEFLARFDDVAL--GEWTDGFE 352 Query: 353 SALYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNAS----AHILGIEVCKEHLNK 403 A+ +D + A+ +H RE K + D S A ILG + ++ Sbjct: 353 KAMNDDFSVPKALAEIHVAVREGNKALSASDEDTARTLAESVRRMAEILGFDPLSHQWSE 412 Query: 404 NIS------IAIEKLVQ---ERLILLKMKK-FSSADYIRKQLESKGFILED 444 S A++ LVQ ER + +K ++ AD +R +L G + D Sbjct: 413 GASDDSAALDALDVLVQAELERRAQARAEKNWAVADEVRDRLAQAGITVTD 463 >gi|288930998|ref|YP_003435058.1| cysteinyl-tRNA synthetase [Ferroglobus placidus DSM 10642] gi|288893246|gb|ADC64783.1| cysteinyl-tRNA synthetase [Ferroglobus placidus DSM 10642] Length = 467 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 255/493 (51%), Gaps = 72/493 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ +KI E + +D + +RMYVCG T YD++HIG+ R ++ FD L R L + G K Sbjct: 1 MKIYDTMSKKIVELK-LDKT-VRMYVCGITAYDYSHIGHGRNIVFFDTLRRFLEFK-GHK 57 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII RA I + + +F KD L H P+ Sbjct: 58 -VIFVQNFTDVDDKIIRRA------IELGKTAKEVAEFFISEFWKDAEALNYKKGLH-PK 109 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 T++IP++I ++ +I G+AYE + ++ F YG S ++E P Sbjct: 110 VTDYIPKIIEFVKALIEKGYAYEVESKYGKDVYFHVPRFEKYGELSGYSVEELNRHRIEP 169 Query: 181 EKYHKKNPADFILWKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 ++ KK+ DF LWK + + ++SPWG+GRPGWHIECS MSS LG FDIHGG Sbjct: 170 DE-RKKDVKDFALWKSAKEEDFKAKSVYDSPWGKGRPGWHIECSVMSSELLGVPFDIHGG 228 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+DLIFPHHENE AQS +E W+HN F+ + G KMSKS GN + I + + K Sbjct: 229 GMDLIFPHHENERAQSYALFGVE-PVRYWVHNNFVTINGEKMSKSLGNIVRIRDAV--NK 285 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKW--------------- 337 +GG V+R +L+ HYR P+D++ + L A E LL+ Sbjct: 286 YGG-----EVLRFFLLLAHYRSPLDYSEKALERAKKSYEYLLNTLRNLDMEIAYLKTFGE 340 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL--GIE 395 + + K ++ V +AL ND+NT AI +H A E KN +F AS L E Sbjct: 341 RREGSVKSYMNEFV-NALENDMNTPKAIAVMHNFAAEINKN-----LFEASLEALEKAFE 394 Query: 396 VCK---------EHLNKNISIAIE--KLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K E + + E +L++ER + K + F AD IR++ KG L D Sbjct: 395 ELKTMGYVFGIFEKYTRVPVLGEEDVRLIKERELARKERDFDKADKIREKFREKGIYLVD 454 Query: 445 YKNPDNGQRMTRW 457 K + TRW Sbjct: 455 TK------KGTRW 461 >gi|19553839|ref|NP_601841.1| cysteinyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|62391480|ref|YP_226882.1| cysteinyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|24418686|sp|Q8NMD7|SYC_CORGL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21325413|dbj|BAC00035.1| Cysteinyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|41326821|emb|CAF21303.1| CYSTEINE TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032] Length = 460 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 242/468 (51%), Gaps = 48/468 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + +F+ + P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 3 LRIFDTGTRTLRDFKPVQPGHASVYLCGATPQSSPHIGHVRSAVAFDILRRWLMAKGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + +S ++F L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILTKASEN--GRPWWEWVSTYE----REFTWTYNTLGVLPPSTEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-----NYGSFSRRKIDEQKMGTRV 179 AT H+ QMI +Q +I +G AY + + FD ++ +YGS S ++++ + G Sbjct: 115 ATGHVTQMIKYMQRLIDNGFAYAVDGSVYFDVAAWSKAEGSDYGSLSGNRVEDMEQGE-- 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P+ + K+ P DF LWK + P EP W +PWG GRPGWH+ECSAM+++YLG+ FDIH GGLD Sbjct: 173 PDNFGKRGPQDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMATYYLGEQFDIHCGGLD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQ+ A +K AN W+HN ++ + G KMSKS GN + + E+L+ + Sbjct: 233 LQFPHHENEIAQAHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLAVPEMLKQVR--- 287 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-----PAVLS 353 PV +R + HYR ++++ L+EA + + G ++ P Sbjct: 288 -----PVELRYYLGSAHYRSVLEYSESALSEAAVGYRRIESFLERVGDVEVGEWTPGFEV 342 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCK------ 398 A+ D+ A+ +H RE D L A +LG + + Sbjct: 343 AMDEDIAVPKALAEIHNAVREGNAALDKGDREAAEKLASSVRAMTGVLGFDPVEWGSDAG 402 Query: 399 --EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +K + + I ++ R K ++ AD +R +L G + D Sbjct: 403 ADGKADKALDVLISSELERRATARAEKNWAVADEVRDRLADAGIEVVD 450 >gi|332637987|ref|ZP_08416850.1| cysteinyl-tRNA synthetase [Weissella cibaria KACC 11862] Length = 471 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 252/493 (51%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K +NT+ + F I+ I MYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 MKTFNTMSLEKETFTPINEKTINMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A ++ ++P + K F +DT L T +PR Sbjct: 61 -VNYVSNFTDVDDKMIAAASEQGITVPE------LADKYIDAFNEDTAPLNIKPATVRPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP-- 180 AT HIP++I ++++I G+AYE+ ++ F YG + + + E + R+ Sbjct: 114 ATEHIPEIIEFVEDLIKKGYAYESEGDVYFRAKKFKGYGILAHQDLAEMESNAAGRLDDG 173 Query: 181 EKYHKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF +WK + W SPWG+GRPGWHIECS MS+ YLG DIHGGG+D Sbjct: 174 ELARKEDPMDFAVWKGENGDGAIAWNSPWGKGRPGWHIECSVMSTKYLGNHLDIHGGGID 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHH NEIAQ+ A EK W+HNGF+ + E KMSKS GNF T++ELL+ Sbjct: 234 LAFPHHTNEIAQT-EAHTGEKFVEKWLHNGFVTVGDENEKMSKSLGNFTTVHELLQQID- 291 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------WPQTSTSKG 345 V+R + T YR PI ++ + + A L + + S Sbjct: 292 -----DPMVLRFFIATTQYRRPIAYSQKNMDLAARNLERIRTGYRNLQFRLGSAVAGSDA 346 Query: 346 IIDP-------AVLSALYNDLNTVSAIQALHKL------------ARESTKNHDLLPIFN 386 I+ A + A+ +D N +A+ A+++L + T N L I + Sbjct: 347 DIEAKAQEKVDAFVEAMDDDFNAQNAMTAVYELIELANLYSQAEEVKTDTVNFVLKQIKD 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++ G++ ++ + ++ L++ER + F+ +D IR +L S+G ILED Sbjct: 407 L-MNVFGVDGLEQA--PLLDADVDALIKERDAARETSNFARSDEIRDELASRGIILEDTP 463 Query: 447 NPDNGQRMTRWKQ 459 + TRW++ Sbjct: 464 ------QGTRWRR 470 >gi|302338662|ref|YP_003803868.1| cysteinyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293] gi|301635847|gb|ADK81274.1| cysteinyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293] Length = 474 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 247/476 (51%), Gaps = 43/476 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 KI +YNT+ R++ EF+ I+ ++MY CGPTVY+FAHIGN R + DVL R+ Y G Sbjct: 2 KILLYNTMGREVQEFKPIEDGLVKMYTCGPTVYNFAHIGNLRTYVFEDVLRRVFEYA-GF 60 Query: 64 KCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 K V +V NITD+ DD + E S ++ I T F +DT RL + P Sbjct: 61 K-VEHVMNITDVGHLTDDADEGEDKMEKSSRESGKSVWEIAKYYTDAFFRDTDRLNIIRP 119 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 T PRAT HI MI LI+ + GH Y+A + F + P+YG + + + G R+ Sbjct: 120 TVAPRATEHIDDMIALIKRLEEGGHTYQAGGNVYFSIDTFPDYGRLALLDRQDLQAGARI 179 Query: 180 PEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 +K+NP DF+LW ++ E W+SPWG+G PGWHIECSAMS YLG+ FDIH G Sbjct: 180 EVDSNKRNPHDFVLWFTNSKFENHAMLWDSPWGKGYPGWHIECSAMSIRYLGEQFDIHCG 239 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+D I HH NEIAQ+ A ++ W+H FL + KM+KS GNF+T+ L++ Sbjct: 240 GVDHIPVHHTNEIAQAEAATG-KQWVQYWVHGEFLLMNKGKMAKSAGNFLTLQSLVD--- 295 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSK-----------W---- 337 + + R L HYR + F+ + L A E L+S+ W Sbjct: 296 ---KGYHPLDYRYFCLGGHYRSQLQFSFESLDAAKSARERLVSRIAVLREELGDCWKEAI 352 Query: 338 ---PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI 394 P + SK + +A+ D+N A+ L +L + + + L + +A +LG+ Sbjct: 353 ALPPSAAGSKFL--ERFEAAVGQDMNMPKALAELWQLLKSELQPGEKLSVVSAMDRVLGL 410 Query: 395 EVC---KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + + IE+L+++R K F AD IR +L ++G ++D N Sbjct: 411 NLLALPQHATDSSEDREIEELIEQRNAARSRKDFHLADEIRDKLSARGISIKDTPN 466 >gi|254444496|ref|ZP_05057972.1| cysteinyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235] gi|198258804|gb|EDY83112.1| cysteinyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235] Length = 475 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 170/484 (35%), Positives = 252/484 (52%), Gaps = 56/484 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K++ +NTL RK + + MY CGPTVY AHIGN R + DV+ R+L+ G Sbjct: 2 KQVTFHNTLSRKAEPIVPTKGNVVGMYCCGPTVYAQAHIGNFRTFLAQDVMRRVLQTA-G 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V +VRNITD+DDK I R SI ++ T TQ F D R LAP + Sbjct: 61 YK-VIHVRNITDVDDKTIAR------SIEEGRQLTEFTEHWTQIFHADCERFNMLAPQIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 P+AT HI + I +I+ +I GHAY +++ + F SS YG SR K E+++ T P Sbjct: 114 PKATEHIAEQIAMIEQLIQRGHAYASDDGSVYFRVSSFDEYGKLSRLK--ERQLLTDAPA 171 Query: 181 -------EKYHKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++Y + + ADF++WK P + W+SPWG+GRPGWH+ECSAM+ YLG Sbjct: 172 NDTPVDSDEYTRDSAADFVMWKSRKPTDGDVYWDSPWGQGRPGWHLECSAMAMKYLGNNL 231 Query: 232 DIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+DL FPHHENEIAQS C +K WIH L ++G+KMSKS NF T+++ Sbjct: 232 DIHSGGVDLTFPHHENEIAQSECSCGHEKKFFKYWIHAAHLLVDGQKMSKSLDNFYTVDD 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----TSKGI 346 + + +P V+R A+ YR+ I+FT+ L A+ L + + S G+ Sbjct: 292 I------AAKGYPPVVLRYALTSGAYRQTINFTLDTLGAAQSALVRLKKFSDELLAEAGL 345 Query: 347 IDPAVLSA--------------------LYNDLNTVSAIQALHKLARESTKNHDLLPIFN 386 +VL L +D+N A+ A+ + L+P F+ Sbjct: 346 KRASVLKEIAKGKHLHDDWDPFADAWKKLTHDMNIAGALGAIFTAIKAKPGPEALIP-FH 404 Query: 387 ASAHILGIEVCKEHLNK---NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 LG ++ + + K ++ I+ L Q+R + K +++AD +R +L + G+ Sbjct: 405 KLIFALGYDLDQVVIEKPKVDVPEDIKILAQKRWDAKQAKDWATADALRDELAAAGWKAL 464 Query: 444 DYKN 447 D K+ Sbjct: 465 DRKD 468 >gi|149196426|ref|ZP_01873481.1| cysteinyl-tRNA synthetase [Lentisphaera araneosa HTCC2155] gi|149140687|gb|EDM29085.1| cysteinyl-tRNA synthetase [Lentisphaera araneosa HTCC2155] Length = 463 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 163/468 (34%), Positives = 242/468 (51%), Gaps = 49/468 (10%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + R+ F I+ R+Y CGPTVY++AHIGN R + D+L R+L+ + VT V Sbjct: 1 MSREAEPFTPINEGEARLYTCGPTVYNYAHIGNFRAYVFEDLLRRVLKL--NDYKVTQVM 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N+TD+DDK I +++ + +ND +I + F +D +L H P AT+HIP Sbjct: 59 NLTDVDDKTIRDSQK--AGMSLNDFTAIYK----KAFFEDLEKLNVEPAEHYPAATDHIP 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIF-DTSSIPNYGSFSRRKIDEQKMGTRV-PEKYHKKNP 188 QMI +IQ ++ G+AY A+++ ++ +YG ++ D Q GTRV ++Y K++ Sbjct: 113 QMIDMIQTLVDKGYAYLADDKCVYYSIDKFEHYGCLAKIDRDNQMSGTRVKTDEYEKESV 172 Query: 189 ADFILWKR--STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +DF LWK + W+SPWG GRPGWHIECSAM+ LG FD+H GG+D +FPHHE Sbjct: 173 SDFALWKAWDKADGDVKWDSPWGEGRPGWHIECSAMAKATLGDHFDMHTGGVDNMFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 +EIAQS A+ K N W+H L + KMSKS GNF T+ +L E + W Sbjct: 233 DEIAQSEAANGC-KYVNYWMHCAHLRINNAKMSKSLGNFYTLAQLTE------KGWAGAE 285 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KGIIDPA----------- 350 +R +L THYR ++F V+ E LS T + I D A Sbjct: 286 VRYMLLATHYRAGLNFVVETGAEKSESLSNARAAITRLQNFIERIKDKADGELSSELSEL 345 Query: 351 -------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG-------IEV 396 L +L +DLN A+ + RE + D N A + ++V Sbjct: 346 CAKAQDEFLDSLNDDLNISGALGKMFDFIREGNRILDSNETVNQEALLNTLKYFNRILDV 405 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K L+ ++ I L +ER K + +D IR QL+++G+++ED Sbjct: 406 MKFDLDNDVPAEILALAEERQQARADKNWGRSDEIRDQLKAQGWVIED 453 >gi|118472553|ref|YP_890296.1| cysteinyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] gi|187629830|sp|A0R558|SYC_MYCS2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118173840|gb|ABK74736.1| cysteinyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] Length = 477 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 236/470 (50%), Gaps = 46/470 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T+ + +F + P + +Y+CG TV HIG+ R + FDVL R L + Sbjct: 16 LRLYDTMAGAVRDFVPLRPGHASIYLCGATVQGLPHIGHVRSGVAFDVLRRWLTANGYD- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A P + + + F L L P+ +PR Sbjct: 75 -VAFIRNVTDIDDKILNKAAD--AGRPWWEWAATFE----RAFSAAYDALGVLPPSAEPR 127 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ LI+ +I GHAY A ++ FD S+P+YG S +ID+ G V Sbjct: 128 ATGHITQMVELIERLIDKGHAYAAGGDVYFDVLSLPDYGQLSGHRIDDVHQGEGVATG-- 185 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P EP W +PWGRGRPGWH EC AM YLG FDIH GG+DL+FPH Sbjct: 186 KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMCEAYLGPEFDIHAGGMDLVFPH 245 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG++ + G KMSKS GN ++I +L+ + A Sbjct: 246 HENEIAQAHGAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSIPAVLQRVR-------A 296 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQ--TSTSKGIIDPAVLSAL 355 +R + HYR ++F+ L +A E L + S G P +AL Sbjct: 297 AELRYYLGSAHYRSMLEFSETALQDAVKAYTGIEDFLHRVCSRVGSVPIGEWTPKFAAAL 356 Query: 356 YNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEHLN---- 402 +DL+ A+ +H E + D A ILG + E Sbjct: 357 NDDLSVPIALAEIHAARAEGNRALDSGDHQTAMQQASSIRAMMDILGCDPLNERWESRDA 416 Query: 403 -----KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K + + ++ + R + + +++AD IR +L+ G + D + Sbjct: 417 TSAALKAVDVLVQWALASRAEARERRDWAAADAIRDRLKEAGIEVTDTAD 466 >gi|163857764|ref|YP_001632062.1| cysteinyl-tRNA synthetase [Bordetella petrii DSM 12804] gi|163261492|emb|CAP43794.1| cysS [Bordetella petrii] Length = 516 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 174/498 (34%), Positives = 246/498 (49%), Gaps = 57/498 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R F+ P +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR G K Sbjct: 32 LHIYNTLSRTKEPFKPAQPGQVRMYVCGMTVYDYCHLGHARMLVAFDVVQRWLRAS-GLK 90 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T D L P +PR Sbjct: 91 -VDYVRNITDIDDKIIRRA------VETGRRIGEVTEYYIAAMHADERALGVQPPDREPR 143 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +M+ +I + +G AY A++ ++ + YG S + +D+ + G RV Sbjct: 144 ATQYVGEMLDIIGRLEQNGLAYRADDGDVNYAVRGFDGYGKLSGKALDDLRAGERVAVGS 203 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W+SP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 204 AKRDPLDFVLWKAAKADEPDDTKWQSPYGLGRPGWHIECSAMSRALLGLPLDIHGGGPDL 263 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-------E 293 FPHHENEIAQ+ A AN W+H G L ++ KMSKS GNF TI + + + Sbjct: 264 KFPHHENEIAQTEGA-FGGVLANTWMHCGPLMVDADKMSKSLGNFRTIRQTIAQGEAPAD 322 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---- 349 ++ A ++R ++ HYR P ++T L +A+ L + Q + D Sbjct: 323 QAEYAVNPREAEMLRFFIVRNHYRSPQNYTPHNLADAQSALDRLYQALLNVAPDDAGLDW 382 Query: 350 ------AVLSALYNDLNTVSAIQALHKLARESTK--------------------NHDLLP 383 A +A+ +D NT A+ AL +LA E+ + D Sbjct: 383 NEPQAQAFKAAMDDDFNTSGAVAALFELASEANRTRSARSAGQLKSLAALLGLLQQDPAR 442 Query: 384 IFNASAH--ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 F + G+ + IE L+ R + + ++ AD IR QL G Sbjct: 443 YFQCATRYSAAGLAQAATPSASLDAGQIETLIAARAAAKQARDYAEADRIRAQLREAGIE 502 Query: 442 LEDYKNPDNGQRMTRWKQ 459 L+D GQ T+W++ Sbjct: 503 LDDKP---GGQ--TQWRR 515 >gi|24214563|ref|NP_712044.1| cysteinyl-tRNA synthetase [Leptospira interrogans serovar Lai str. 56601] gi|30316164|sp|Q8F525|SYC_LEPIN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24195528|gb|AAN49062.1| cysteinyl-tRNA synthetase [Leptospira interrogans serovar Lai str. 56601] Length = 471 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 167/494 (33%), Positives = 247/494 (50%), Gaps = 62/494 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YG 62 +I+ YN+L + +F DP+ + +Y CGPTVY+FAHIGN R + DVL R L+ YG Sbjct: 3 EIQFYNSLSGRKEKFSPSDPNRVTVYSCGPTVYNFAHIGNLRAFLFVDVLRRSLKLLGYG 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V NITDIDDKII SI +I T+ T+ F +D ++ H Sbjct: 63 ---VDMTMNITDIDDKII------RDSIASKKSIIEFTAPWTKAFFEDLKTVSAEILEHY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PE 181 P+AT+ IP+M+ +IQ + G Y+ + + F NYG S+ K GTR + Sbjct: 114 PKATDSIPEMVDIIQKLQKKGLVYKKDESLYFSIQKFQNYGKLSKIDTSGMKTGTRYDTD 173 Query: 182 KYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +Y K++ DF+LWK E W++ G GRPGWH+ECSAM G DIH GG+DL Sbjct: 174 EYEKEDVRDFVLWKSPKLEGETSWDTLVGTGRPGWHLECSAMIRKVYGSGVDIHTGGVDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A E W+H+ L ++G+KMSKS GNF T+ +L++ + Sbjct: 234 LFPHHENEIAQSEGAFPEESFVKTWLHSEHLLVDGQKMSKSKGNFYTLRDLIQ------Q 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALY---- 356 IR ++ THYR ++F+ R+ EA + K ++P + + Y Sbjct: 288 GLDPKAIRFLLISTHYRSKLNFSTDRIAEASANIRKIQNCLDRILELEPDIKADFYFLFS 347 Query: 357 ----------------NDLNTVSAIQALHKLARE-----STKNHD---------LLPIFN 386 +DLN A+ + + ++ T D +L F+ Sbjct: 348 IPFVQTWKKEFEESLADDLNISKALAVVFESVKQINSLLDTNQSDSKQRIEYIQILAYFD 407 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +L E K+ L+ I+ L++ER I K K F+ +D IR QL ++G ++ED K Sbjct: 408 RILGVLNFESKKDLLDSE----IDSLIEERQIARKNKDFARSDAIRDQLLAQGILIEDTK 463 Query: 447 NPDNGQRMTRWKQK 460 RW++K Sbjct: 464 EG------IRWRKK 471 >gi|300790490|ref|YP_003770781.1| cysteinyl-tRNA synthetase [Amycolatopsis mediterranei U32] gi|299800004|gb|ADJ50379.1| cysteinyl-tRNA synthetase [Amycolatopsis mediterranei U32] Length = 435 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 154/446 (34%), Positives = 232/446 (52%), Gaps = 48/446 (10%) Query: 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ-EHP 88 +CG TV HIG+ R ++ +DVL R L + V VRN+TDIDDKI+ +A + E P Sbjct: 1 MCGATVQGVPHIGHVRGVLNYDVLRRWL--VHSGLDVLLVRNVTDIDDKILTKAAENERP 58 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 + + + F +L CL P+ PRAT H+ QM+ L++ +I GH Y A Sbjct: 59 WWEWG-------ATHERAFETAYDQLGCLPPSINPRATGHVTQMVELMERLIESGHGYVA 111 Query: 149 NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + ++ F S YG S + +++ + G P + K++P DF +WK + P EP W +PW Sbjct: 112 DGDVYFSVKSFDEYGKLSGQVLEDVQQG-ETPTR-GKRDPRDFTMWKSAKPGEPSWPTPW 169 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWH+ECSAM++ YLG FDIHGGG+DL+FPHHENE AQS + A W+HN Sbjct: 170 GNGRPGWHLECSAMATAYLGAEFDIHGGGIDLVFPHHENERAQSNAVG--DAFARFWLHN 227 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ + G KMSKS GN ++I +L+ + AP +R ++ HYR I+++ ++ Sbjct: 228 AWVTMSGEKMSKSLGNTVSIPAMLDRYR-------APELRYYLVQPHYRSTIEYSDTAVS 280 Query: 329 EA-------EILLSKWPQTS-TSKGIIDPAVLSALYNDLNTVSAIQALHKLAR------- 373 EA E L + GII A +AL +DL T A +H R Sbjct: 281 EAAQGYRRIETFLRRAAAAGDVPVGIIPEAFANALDDDLATPQAFAVVHTTVRDGNAALD 340 Query: 374 --ESTKNHDLLPIFNASAHILGIEVCKEHLN----------KNISIAIEKLVQERLILLK 421 +++K + A +LG++ + + +S +E L+ ER Sbjct: 341 AGDTSKALEFAAAVRAMTDVLGLDPLSARWSEAGGSETPTKEALSRIVEGLLAERQQARA 400 Query: 422 MKKFSSADYIRKQLESKGFILEDYKN 447 K F+ AD R +L+ G ++ED N Sbjct: 401 EKDFARADAARDRLQQAGIVVEDTPN 426 >gi|78186099|ref|YP_374142.1| cysteinyl-tRNA synthetase [Chlorobium luteolum DSM 273] gi|109894917|sp|Q3B6D2|SYC_PELLD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78166001|gb|ABB23099.1| cysteinyl-tRNA synthetase [Chlorobium luteolum DSM 273] Length = 483 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 246/492 (50%), Gaps = 75/492 (15%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I+N+L R+ F+ + P + +YVCGPTVY AH+G+A+ + FDV+ R LR G + V Sbjct: 5 IFNSLGREKQLFEPLHPGVVGIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRES-GYR-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 YV+NITD+ +DKI +AR E P+ I T+ F+ D RL Sbjct: 63 KYVQNITDVGHLSDDADEGEDKIARQARLEKTD-PME-----IAQFYTRSFLDDMDRLGV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS-RRKIDEQKM 175 L P P AT HIP+ I L+ ++ GHAYE N + F S P YG S R +D + Sbjct: 117 LRPNISPLATGHIPEQIALVDKLVKRGHAYEVNGNVYFSVESFPGYGKLSGRTDLDAVQS 176 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G RV + K NP+DF LWK++ E G W+SPWG G PGWH+ECSAMS YLG Sbjct: 177 GARVGVRSEKHNPSDFALWKKA---EEGHLMQWDSPWGMGYPGWHLECSAMSMKYLGDTI 233 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG++ FPHHE EIAQS A+ + W+HN + + G KM KS N + + E+ Sbjct: 234 DIHGGGMENRFPHHECEIAQSEAANE-KPYVRYWMHNNMVTVNGTKMGKSLKNAVNLKEI 292 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSK 344 +T +R +L +HYR P+D++ + + L K +T + Sbjct: 293 FKTVD-------PLAVRFFILQSHYRSPLDYSDTAVAGSTAGLQKLRETRQRLIEATPGT 345 Query: 345 GIIDPAVLS-----ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---------- 389 G++D A S A+ +D NT AI AL ++ D NAS+ Sbjct: 346 GLLDAAPFSLRFREAMDDDFNTPVAIAALFDFSKALNTALDRPDGLNASSLEAARELFST 405 Query: 390 ---HILGIEV------------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +LGI E L++ + + +E + R K K F+++D IR Sbjct: 406 AAVTVLGIMTEDAEGGMHDGGRSAETLDEVMGVLMELRSEAR----KNKDFATSDLIRDH 461 Query: 435 LESKGFILEDYK 446 L + G ++D + Sbjct: 462 LLAAGIEIKDTR 473 >gi|260437953|ref|ZP_05791769.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876] gi|292809704|gb|EFF68909.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876] Length = 472 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 174/477 (36%), Positives = 247/477 (51%), Gaps = 48/477 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ +NTL RK+ +F + MY CGPTVY FAHIGN R I+ D+L + LRY Sbjct: 1 MENKVYFFNTLTRKVEQFIPNVDGKVAMYTCGPTVYHFAHIGNLRSYIMEDILEKTLRYV 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V V NITD+ +DK+++ A++EH ++ I T F D Sbjct: 61 GYD--VKRVMNITDVGHLTSDADTGEDKMLKGAKREHKTV------MEIAKYYTDAFFDD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 +L P ATN IP+ I +++ ++ +AY A + FDTS + +Y FS + Sbjct: 113 CRKLNIKRPDVVEPATNCIPEFINMVKVLLEKDYAYIAGGNVYFDTSKLDDYYVFSSQSE 172 Query: 171 DEQKMGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSH 225 E +G R V E +KKN ADF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KELMVGVRDDVSEDINKKNKADFVLWFTKSKFDNQELKWDSPWGVGYPGWHIECSCISMK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 +LG+ DIH GG+D IFPHH NEIAQS A K N W H LN + KMSKS G F Sbjct: 233 HLGEYMDIHCGGVDNIFPHHTNEIAQS-EAYLGHKWCNYWFHVHHLNDKSGKMSKSKGEF 291 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL---TEAEILLSKWPQTST 342 +T++ LLE K + V RL L +HYR+P++F+ + L T A L K Sbjct: 292 LTVS-LLEEKGYN-----PLVYRLFCLQSHYRKPLEFSYEVLDNMTTAYNKLIKKIGELK 345 Query: 343 SKGIIDPAVLSALYN--------DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI 394 + G +D + N DLNT SAI ++ + R + L + + +L + Sbjct: 346 ADGSVDEEAFAGFRNKFEDAICSDLNTSSAITVIYDVLRSDINDVTKLELIKSFDEVLSL 405 Query: 395 EVCKEHLNKNISIAIEKL-------VQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ K+H N S +L ++ER K K F+ AD IR +L +KG ++D Sbjct: 406 DLLKDHGNDKESSVDSELKEYILAKIEERKAAKKEKDFAKADAIRDELAAKGIQIKD 462 >gi|320101049|ref|YP_004176641.1| cysteinyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162] gi|319753401|gb|ADV65159.1| cysteinyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162] Length = 484 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 181/488 (37%), Positives = 245/488 (50%), Gaps = 74/488 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +K+Y+TL R + E + ++P ++MYVCGPTVYD+ HIG+ + +++D R L R Y+ Sbjct: 8 VKVYDTLSRGLKELRPVEPGIVKMYVCGPTVYDYTHIGHGKTYVIYDAFKRYLSLRGYH- 66 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V NITDIDDKII R+ +E + I + T+ ++ +L + H Sbjct: 67 ---VVHVMNITDIDDKIIRRSHEE------GRDWNEIVEEYTRDYISALEKL-NVKVDHH 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR + HI ++I IQ +I G+AY A + + FD +YG S R+ G Sbjct: 117 PRVSEHIDEIIRFIQGLIDKGYAYVAPSGSVYFDVDKYEDYGRLSGRE-SRDTWGQEQEF 175 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNP DF LWK + P EP WESPWG+GRPGWHIECS MSS YLG FDIHGGG DLI Sbjct: 176 LSEKKNPYDFALWKAAKPGEPYWESPWGKGRPGWHIECSVMSSRYLGSRFDIHGGGTDLI 235 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE AQS + +IW+H+G + + KMSKS N + + E + K+G Sbjct: 236 FPHHENERAQSEAYFGSKPWVSIWMHSGLVMVGKDKMSKSLKNIVPLKEAFD--KWG--- 290 Query: 302 WPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGII---D 348 P P +RL L THYR+P+ F +RL A LL K + ++ D Sbjct: 291 -PMP-LRLWYLSTHYRKPLYFFEEALENAVKLYERLVTAAQLLGKLSREASGLHYARDED 348 Query: 349 PAVLS-----------ALYNDLNTVSAIQAL----------------HKLARESTKNHDL 381 V S AL +D NT A+ A+ H L S K L Sbjct: 349 LKVFSQLVSLHRRFHEALSDDFNTAEAMAAVNEYLTILFRDIQHNPRHLLVSTSIK---L 405 Query: 382 LPIFNASAHILGIEV-----CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 L FN+ +L E+ + L+ I I LV R L K + +D IR L Sbjct: 406 LREFNSVLGVLDKELEAVGEAEALLDSVIGI----LVNVRRELRKRGLYDLSDAIRSDLS 461 Query: 437 SKGFILED 444 G L D Sbjct: 462 KIGIQLMD 469 >gi|116071086|ref|ZP_01468355.1| Cysteinyl-tRNA synthetase, class Ia [Synechococcus sp. BL107] gi|116066491|gb|EAU72248.1| Cysteinyl-tRNA synthetase, class Ia [Synechococcus sp. BL107] Length = 499 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 174/502 (34%), Positives = 247/502 (49%), Gaps = 78/502 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL R+ F + P +Y CG TVYD H+G+AR I +DVL R L + E Sbjct: 3 LRLTNTLTRRTEPFTPLRPGKASIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWSGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKI++RA E N +++ ++ +N F D L L P PR Sbjct: 62 -VRFVQNFTDIDDKILKRASDE------NSSMTAVSERNIDAFHADMDSLGILRPDSMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP-- 180 AT + + LI+ + G AY A ++ F YG S R + EQ+ G RV Sbjct: 115 ATQCLDGIRALIRELEAKGAAYSAEGDVYFAVMKHAGYGKLSGRDLSEQQENAGGRVADA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + EP + SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EGARKQHPFDFALWKAAKEGEPSFPSPWGAGRPGWHIECSAMVRAELGDTIDIHLGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A ++ A +W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 235 VFPHHENEIAQSEAATG-QELAQVWMHNGMVNVGGQKMSKSLGNFTTIRALLE------- 286 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQR----------------LTEAEILLSKWPQTSTS 343 S +P+ +RL +L HYR+P+DFT + L E +WP T Sbjct: 287 SGVSPMTLRLFVLQAHYRKPLDFTAEALEAAATGWKGLNAALGLGERHGQSLEWPATPAL 346 Query: 344 K--GIIDPA-------------VLSALYNDLNTVSAIQALHKLAR-------------ES 375 ++ P+ + A+ +DLN+ A+ L LA+ + Sbjct: 347 APVALVGPSNHPSEPLEPLQQRFIDAMDDDLNSSGALAVLFDLAKPLRALANRLERGDRA 406 Query: 376 TKNHDLLP-------IFNASAHILGI------EVCKEHLNKNISIAIEKLVQERLILLKM 422 + D L + A +LG+ E + I+ + R+ Sbjct: 407 DRPADELAALALRWRLLRDLAAVLGLRCEADSETSGPGDDSTNQDEIQAAIDARIAAKSA 466 Query: 423 KKFSSADYIRKQLESKGFILED 444 K ++ AD IR++L+++G L D Sbjct: 467 KNYAEADRIREELKAQGIELID 488 >gi|45657880|ref|YP_001966.1| cysteinyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798557|sp|Q72QT1|SYC_LEPIC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|45601121|gb|AAS70603.1| cysteinyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 471 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 168/494 (34%), Positives = 246/494 (49%), Gaps = 62/494 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YG 62 +I+ YN+L + +F DP+ + +Y CGPTVY+FAHIGN R + DVL R L+ YG Sbjct: 3 EIQFYNSLSGRKEKFSPSDPNRVTVYSCGPTVYNFAHIGNLRAFLFVDVLRRSLKLLGYG 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V NITDIDDKII SI +I T+ T+ F +D ++ H Sbjct: 63 ---VDMTMNITDIDDKII------RDSIASKKSIIEFTAPWTKAFFEDLKTVSAEILEHY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PE 181 P+AT+ IP+M+ +IQ + G YE + + F NYG S+ K GTR + Sbjct: 114 PKATDSIPEMVDIIQKLQKKGLVYEKDESLYFSIQKFQNYGKLSKIDTSGMKTGTRYDTD 173 Query: 182 KYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +Y K++ DF+LWK E W + G GRPGWH+ECSAM G DIH GG+DL Sbjct: 174 EYEKEDVRDFVLWKSPKLEGETSWYTLVGTGRPGWHLECSAMIRKVYGSGVDIHTGGVDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A E W+H+ L ++G+KMSKS GNF T+ +L++ + Sbjct: 234 LFPHHENEIAQSEGAFPEESFVKTWLHSEHLLVDGQKMSKSKGNFYTLRDLIQ------Q 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALY---- 356 IR ++ THYR ++F+ R+ EA + K ++P + + Y Sbjct: 288 GLDPKAIRFLLISTHYRSKLNFSTDRIAEASANIRKIQNCLDRILELEPDIKADFYFLFS 347 Query: 357 ----------------NDLNTVSAIQALHKLARE-----STKNHD---------LLPIFN 386 +DLN A+ + + ++ T D +L F+ Sbjct: 348 IPFVQTWKKEFEESLADDLNISKALAVVFESVKQINSLLDTNQSDSKQRIEYIQILAYFD 407 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +L E K+ L+ I+ L++ER I K K F+ +D IR QL ++G ++ED K Sbjct: 408 RILGVLNFESKKDLLDSE----IDSLIEERQIARKNKDFARSDAIRDQLLAQGILIEDTK 463 Query: 447 NPDNGQRMTRWKQK 460 RW++K Sbjct: 464 EG------IRWRKK 471 >gi|229496784|ref|ZP_04390495.1| cysteinyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406] gi|229316330|gb|EEN82252.1| cysteinyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406] Length = 491 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 181/503 (35%), Positives = 255/503 (50%), Gaps = 76/503 (15%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ +YNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+LYR L + Sbjct: 1 MEHPFYLYNTLSRKKEQFIPVAAPHVGMYVCGPTVYGDAHLGHARPAITFDILYRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DK+ ++AR E P+ +T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEADADDGEDKVAKKARLEQLE-PMEVVQFYLT-----RYRHA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSR 167 L L P+ +P A+ HI + I L++ I+ G+AYE+ + FD YG S Sbjct: 113 MEALNVLPPSIEPMASGHIIEQIRLVEEILKAGYAYESKGSVYFDVEKFNREKGYGKLSG 172 Query: 168 RKIDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + + K+NP DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLSNTRTLDGQDEKRNPLDFALWKCAKPEHLMHWPSPWSEGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG +FDIHGGG+DL+FPHHE EIAQ+ A E W+HN + +EG+KM KS GNF Sbjct: 233 YLGDLFDIHGGGMDLVFPHHECEIAQAEAAMGHE-LVRYWMHNNMITIEGKKMGKSYGNF 291 Query: 286 ITINELLETKKFGG------RSWPAPVIRLAMLMTHYREPIDFT----------VQRLTE 329 IT++E F G ++ IR +L HYR +DF+ + RL + Sbjct: 292 ITLDEF-----FAGSHPKLTEAYSPMTIRFFILGAHYRGTVDFSNEALQAARKGLMRLLD 346 Query: 330 AEILLSKWPQTSTSKGIIDP-----AVLSALYNDLNTVSAIQALHKLA---------RES 375 A LL K +TS DP + A+ +DLNT I L A ES Sbjct: 347 ANALLDKLTPGATS--TFDPKEIEKSAQEAMNDDLNTPIVIATLFDAATKINRLRNGEES 404 Query: 376 TKNHDL--------LPIFNASAHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKK 424 DL L +F+ ILG++ +E + A++ L++ R K Sbjct: 405 LTQDDLAELKRVFRLYLFD----ILGLQDERESSSSGAEAYKGAMDLLMEIRKTAKDNKD 460 Query: 425 FSSADYIRKQLESKGFILEDYKN 447 ++++D IR +L GFI++D K Sbjct: 461 WATSDKIRDRLAELGFIVKDTKQ 483 >gi|322437023|ref|YP_004219235.1| cysteinyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9] gi|321164750|gb|ADW70455.1| cysteinyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9] Length = 492 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 179/511 (35%), Positives = 248/511 (48%), Gaps = 76/511 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL ++ D + +RMY CGPTVYD+ HIGN R I DVL R L+ E Sbjct: 3 LELFNTLGGRVESLTPADGAVLRMYACGPTVYDYGHIGNFRTFIHVDVLRRYLKQTGIE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+DDKII A +PI D T K F +D L P PR Sbjct: 62 -VKHVMNITDVDDKIIRNAAL--LKMPIED----YTRKYEDAFFEDMAALGVERPEVLPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT +I +M+ LI+ + AY+A + F + +YG S++ + + G RV ++ Sbjct: 115 ATENIEEMVALIERLAEKDIAYQAEDGSWYFRIARFADYGKLSKKDFEGIEDGARVDVDE 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 Y K DF LWK P E WE+ G GRPGWHIECSAM++ +LG FD+H GG DL F Sbjct: 175 YEKDAARDFALWKAVKPGEHAWETRLGPGRPGWHIECSAMATKFLGDGFDLHAGGEDLTF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A A W+H FL +EGRKMSKS GNF T+ +LL + Sbjct: 235 PHHENEIAQSESASGT-AFARHWMHVRFLLVEGRKMSKSEGNFYTLRDLLL------KGH 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAVL--- 352 A IR ++ YR ++FT L E+ + + S +G+ + Sbjct: 288 RASAIRFLLMSVPYRHQLNFTFDGLIESTNAVERLRTFADRMRKGSFPEGLNEDLAAATA 347 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA-SAHILGI---------- 394 +AL NDLNT A A+ L R D + + +A IL + Sbjct: 348 KALAGYDAALSNDLNTAEARAAIFDLVRAGNSAADAGTVKSGNAAEILKVLERFDGVFAV 407 Query: 395 ------EVCKEHLN----------------KNISIA---IEKLVQERLILLKMKKFSSAD 429 E+ + L+ +S + I+ LV ER K + F+ AD Sbjct: 408 LVDRDAEITRAALDWAEKDGRMDEAAPELVATLSFSDADIDALVAERTHAKKTRNFARAD 467 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +R +L +KG +LED K+ RWK+K Sbjct: 468 AVRNELLAKGILLEDTKDG------VRWKRK 492 >gi|33865235|ref|NP_896794.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 8102] gi|61216278|sp|Q7U8C0|SYC_SYNPX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33638919|emb|CAE07216.1| cysteinyl-tRNA synthetase [Synechococcus sp. WH 8102] Length = 493 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 143/323 (44%), Positives = 191/323 (59%), Gaps = 21/323 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL R+ F + P +Y CG TVYD H+G+AR I +DVL R L + E Sbjct: 3 LRLTNTLTRRTEPFTPLTPGKASIYCCGVTVYDLCHLGHARSYINWDVLRRFLIWRGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKI++RA ++ N +++ ++ +N F +D L L P PR Sbjct: 62 -VTFVQNFTDIDDKILKRAAEQ------NSSMTEVSERNIDAFHQDMDALGILRPDRMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP-- 180 AT + + LI + G AY A+ ++ F YG S R + EQ+ RV Sbjct: 115 ATQCLDGIRSLIGELEAKGAAYSADGDVYFAVMKHAGYGKLSGRDLSEQQDNAAGRVADA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K++P DF LWK + P EP + SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EEARKQHPFDFALWKGAKPGEPSFPSPWGEGRPGWHIECSAMVRAELGDTIDIHLGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A E A +W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 235 VFPHHENEIAQSEAATGKE-LARVWMHNGMVNVGGQKMSKSLGNFTTIRALLE------- 286 Query: 301 SWPAPV-IRLAMLMTHYREPIDF 322 S +P+ +RL +L HYR+P+DF Sbjct: 287 SGVSPMTLRLFVLQAHYRKPLDF 309 >gi|254459132|ref|ZP_05072554.1| cysteinyl-tRNA synthetase [Campylobacterales bacterium GD 1] gi|207084025|gb|EDZ61315.1| cysteinyl-tRNA synthetase [Campylobacterales bacterium GD 1] Length = 466 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 153/374 (40%), Positives = 208/374 (55%), Gaps = 31/374 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+++++ EF + +YVCGPTVYD +H+G+A+ +VFD+L R+L+ + V Sbjct: 3 IYDSVQKTKREFTPLVEGKASLYVCGPTVYDDSHLGHAKSALVFDLLSRVLKANGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY RNITDIDDKII++A + I IT T F K+ + P +P+AT Sbjct: 61 TYARNITDIDDKIIKKAAESGKDIKE------ITDFYTDAFHKEMDAIGVSRPDIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + M LIQ +I GHAY+ + +I FDTSS Y S S R DE RV K Sbjct: 115 ESLDAMYELIQKLIDSGHAYKTSEGDIYFDTSSDGEYLSLSSRVQDEDDKLQRVENSLQK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL---GKVF--DIHGGGLDL 240 +NPADF LWK + SP+G GRPGWH+ECSAM +L G F DIHGGG DL Sbjct: 175 RNPADFALWKSVKDNTITFNSPFGEGRPGWHLECSAMIEKHLAHEGAEFAVDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENE AQ+ CA AN W+HNGF+N++G KMSKS GN + + L + Sbjct: 235 LFPHHENEAAQTRCATN-HALANYWMHNGFVNIDGEKMSKSLGNSFFLKDAL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIID--------PAV 351 + V+R +L THYR +F Q L ++ L K + G+ D ++ Sbjct: 287 EYDGEVLRFYLLSTHYRSNFNFNTQDLATSKKRLDKIYRLKKRLFGLADCTDATPFKESL 346 Query: 352 LSALYNDLNTVSAI 365 L AL +D+N SA+ Sbjct: 347 LKALSDDMNVSSAL 360 >gi|169627674|ref|YP_001701323.1| cysteinyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977] gi|169239641|emb|CAM60669.1| Cysteinyl-tRNA synthetase [Mycobacterium abscessus] Length = 479 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 165/476 (34%), Positives = 234/476 (49%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +++Y+T + +F + P + +Y+CG TV HIG+ R + FDVL R L R Y Sbjct: 7 LRLYDTRVGAVRDFVPLQPGTVSIYLCGATVQGLPHIGHVRSGVAFDVLRRWLSARAY-- 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN+TDIDDKI+ +A P + + + F + L L P+ Sbjct: 65 --DVLFVRNVTDIDDKILNKAADA--GRPWWE----WAATYERAFDEAYESLGVLPPSVS 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PRAT HI QMI LI +I GHAY E ++ FD S P YG S KID+ G Sbjct: 117 PRATGHITQMIELIDRLIERGHAYRDLREGGGDVYFDVLSYPEYGQLSGHKIDDVHQGEG 176 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF LWK + P EP W +PWG GRPGWH+ECSAM+ YLG FDIH GG+ Sbjct: 177 VATG--KRDPRDFTLWKGAKPGEPSWPTPWGPGRPGWHLECSAMARTYLGPSFDIHCGGM 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQSC A + A W+HNG++ + G KMSKS GN ++I +L+ + Sbjct: 235 DLVFPHHENEIAQSCAAG--DGFARYWMHNGWVTMGGEKMSKSLGNVLSIPAVLQRVR-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKW--PQTSTSKGIIDP 349 A +R + HYR ++++ L +A E L + G P Sbjct: 291 -----AVELRYYLGSAHYRSMLEYSETALADAVKAYCGIEDFLHRVRIRVGDVPVGTWTP 345 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEH 400 A +AL +DL+ A+ +H + + D A ILG + E Sbjct: 346 AFAAALDDDLSVPIALAEVHSTRADGNRALDAGDHEGALSAAASIRAMMSILGCDPLDER 405 Query: 401 LNKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + +Q R K ++ AD IR +L+ G + D + Sbjct: 406 WETRDETSAALNAVDVLVTAELQRRETARTEKNWALADEIRDRLKRAGLEITDTAD 461 >gi|224025545|ref|ZP_03643911.1| hypothetical protein BACCOPRO_02285 [Bacteroides coprophilus DSM 18228] gi|224018781|gb|EEF76779.1| hypothetical protein BACCOPRO_02285 [Bacteroides coprophilus DSM 18228] Length = 492 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 173/495 (34%), Positives = 261/495 (52%), Gaps = 59/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY H+G+ARP I FD+LYR L + Sbjct: 1 MENKLIIYNTLTRRKELFVPLHAPHVGMYVCGPTVYGDGHLGHARPAITFDILYRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHKA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIQLVEEILKNGYAYESKGSVYFDVAKYNKDHHYGVLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVLNTTRELDGQEEKHNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQ+ ++ + + W+HN + + G+KM KS GNF Sbjct: 233 YLGETFDIHGGGMDLVFPHHECEIAQAVASEG-HQMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------- 337 IT++E + K +++ IR +L HYR +DF+ + L AE L + Sbjct: 292 ITLDEFFTGSNKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLLEGVKNL 351 Query: 338 ----PQTSTSKGIIDPAVL-----SALYNDLNTVSAIQALHKLAR--------ESTKNHD 380 P +TS I+P L A+ +DLNT I L R ++T + + Sbjct: 352 ERITPAKATSG--IEPQGLREKCYEAMNDDLNTPIVISHLFDATRMINTVIDKKATISAE 409 Query: 381 LLPIFNASAH-----ILGIEVCKEH---LNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 L + H +LG++ E+ + ++ L+++R+ K ++++D IR Sbjct: 410 DLEELKSVFHLFVFDLLGLKAEAENNAAREEAYGKVVDMLLEQRMQAKANKDWATSDKIR 469 Query: 433 KQLESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 470 DNLAALGFEVKDTKD 484 >gi|42525611|ref|NP_970709.1| cysteinyl-tRNA synthetase [Treponema denticola ATCC 35405] gi|61216253|sp|Q73RJ6|SYC_TREDE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|41815622|gb|AAS10590.1| cysteinyl-tRNA synthetase [Treponema denticola ATCC 35405] gi|325475275|gb|EGC78460.1| cysteinyl-tRNA synthetase [Treponema denticola F0402] Length = 492 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 177/510 (34%), Positives = 254/510 (49%), Gaps = 76/510 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL K EF I +Y CGPTVYD+AHIGN R + D+L + LR+ + Sbjct: 3 LKLHNTLGNKKEEFIPIHEGKAGVYGCGPTVYDYAHIGNLRTYVFQDILVKTLRFLGYD- 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT+V NITD+ +DK+++ A + S+ I T+ F DT RL Sbjct: 62 -VTHVMNITDVGHLTDDEDSGEDKMVKSAEERGKSVLE------IAEFYTKAFFNDTERL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P +AT HI +MI LI+ I +GH Y A + +D S+ P YG + +++ K Sbjct: 115 NIERPGIVCKATEHINEMIELIKRIEANGHTYMAGGNLYYDISTFPKYGELANINLEDLK 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G R+ +K+NP DF+LW + E W+SPWGRG PGWHIECSAMS YLG+ Sbjct: 175 AGARIEIDKNKRNPHDFVLWFTKSKFENQALVWDSPWGRGYPGWHIECSAMSMKYLGEQI 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG+D I HH NEIAQS A +K N W+HN FL + KMSKS G+FI + ++ Sbjct: 235 DIHKGGIDHIRVHHTNEIAQSEGATG-KKWVNYWLHNEFLVMNKGKMSKSAGSFIILEDV 293 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWPQTSTSK 344 + + + A R +L HYR + F+ + + A+ ++KW + Sbjct: 294 I------NKGFSALDYRFLLLGGHYRSQLTFSWEAMETAKNGRKNLNNRVAKWLDGLSDS 347 Query: 345 GIIDPAVLS--------------------------ALYNDLNTVSAIQALHKLARE-STK 377 I++ A L+ A+ +DL+T A+ L L +E Sbjct: 348 EIMEYAALTENLNLKSAKDMIKNEKARSCFDNFIAAMEDDLSTPKALSELQLLIKEKDIP 407 Query: 378 NHDLLPIFNASAHILGIEVCKEHLN---KNISIAIE-----KLVQERLILLKMKKFSSAD 429 D+L + A ILGI++ +E N SI I+ KL++ER K + AD Sbjct: 408 QKDVLTVLAAMDSILGIKLIEESFNTLKDKGSIEIDESEILKLIEERASAKLDKNYKLAD 467 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IR +L+ G ILED T WK+ Sbjct: 468 EIRDKLKGMGIILEDQAGK------TTWKK 491 >gi|255325868|ref|ZP_05366960.1| cysteine--tRNA ligase [Corynebacterium tuberculostearicum SK141] gi|255297080|gb|EET76405.1| cysteine--tRNA ligase [Corynebacterium tuberculostearicum SK141] Length = 462 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 243/476 (51%), Gaps = 55/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 ++IY+T R +F I P + +Y+CG T HIG+ R + FD+L R LL Y Sbjct: 4 LRIYDTATRSQRDFDPIRPGHASIYLCGATPQAQPHIGHLRSGVAFDILRRWLLAQGYD- 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V VRN+TDIDDKI+ +A + N S ++F K L + P+ +P Sbjct: 63 --VALVRNVTDIDDKILTKAAEN------NRPWWEWVSTYEREFTKAYNTLGVIPPSVEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT + QM+ +Q +I G AY A+ + FD ++ +YGS S K++E + G Sbjct: 115 RATGFVTQMVDYMQRLIDAGFAYPADGSVYFDVAAWTKAEGSDYGSLSGNKVEEMEQGE- 173 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K+ DF LWK + P EP W +PWG GRPGWH+ECSAMS++YLG FDIH GGL Sbjct: 174 -GEDSAKRGAQDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMSTYYLGSNFDIHCGGL 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A +K AN W+HN ++ + G KMSKS GN ++I +LE + Sbjct: 233 DLQFPHHENEIAQSHAAG--DKFANYWMHNHWVTMSGEKMSKSLGNVLSIPNMLELVR-- 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA---------------EILLSKWPQTST 342 PV +R + HYR ++++ LTEA ++ L +W Q Sbjct: 289 ------PVELRYYLGSAHYRSVLEYSETALTEAAAGYRRIEDFLGHFDDLELGEWTQGFA 342 Query: 343 SKGIIDPAVLSALYNDLNTVSAI-QALHKLARESTKNHDLLPIFNASAHILGIEVCKEHL 401 D AV AL TV A +AL A + + L A AH+LG + + Sbjct: 343 DAMNDDIAVPKALAEIHTTVRAGNKAL--AAGDEAEARTLAGQVRAMAHVLGFDPLEWED 400 Query: 402 NKNIS---IAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 S A++ LV + R K F++AD +R +L + G + D PD Sbjct: 401 GAQASGADAALDALVHAELERRTQARADKDFATADAVRDRLAAAGITITD--TPDG 454 >gi|189485695|ref|YP_001956636.1| cysteinyl-tRNA synthetase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|226735068|sp|B1GYT2|SYC_UNCTG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|170287654|dbj|BAG14175.1| cysteinyl-tRNA synthetase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 465 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 174/474 (36%), Positives = 247/474 (52%), Gaps = 51/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 IKI+NTL K EF + + MYVCG T YD H+G+AR +VFD++ R LLR Y Sbjct: 3 IKIHNTLSNKKEEFYPQRGNFVSMYVCGITPYDEVHLGHARVYVVFDIVKRHLLRRGY-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +++N TD+DDKI++R++++ N S + + + RL L P Sbjct: 61 -IVKHIQNFTDVDDKIVKRSQEK------NMKPSELAQIYIEDYFVQAGRLNILKAEKYP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T IP+++ I+ ++ G AYE +I F +YG S+R + + + G RV Sbjct: 114 CVTQMIPEIVNFIKELVNKGLAYEIGGDIYFSVEKFKDYGKLSKRNLKDLRAGARVGVCN 173 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K + DF LWK++ EP WESPWG+GRPGWHIECSAMSS LG DIHGGG DL Sbjct: 174 GKNSAFDFALWKKTKENEPREVTWESPWGKGRPGWHIECSAMSSELLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A +K WIHNGF+ + KMSKS NF T+ + E K+ R Sbjct: 234 IFPHHENEIAQS-EAKTGKKFVKYWIHNGFVTINKEKMSKSLNNFFTLKAIFE--KYNPR 290 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------TSKGI 346 V+R +L HY P+DF+ + A L T T K + Sbjct: 291 -----VVRYYLLTQHYSSPLDFSDAGIESARNTLQGMDGTYLRLISSVKESDVEITDKDL 345 Query: 347 ID--PAVLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHI-LGI 394 D LSAL +D N+ A+ LH+L +K L +F A LGI Sbjct: 346 SDLQGNFLSALDDDFNSEKALSYLHELKGLISKGLLTAGRERLSQLKKLFEDFAGTSLGI 405 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ-LESKGFILEDYKN 447 + +E +N +++ L++ER K K ++ +D +RK ++ +G+ + D K+ Sbjct: 406 LLPEE---QNADESLQNLLKERNDARKNKNWAESDRVRKLIIDERGYKIFDNKD 456 >gi|220930684|ref|YP_002507593.1| cysteinyl-tRNA synthetase [Clostridium cellulolyticum H10] gi|220001012|gb|ACL77613.1| cysteinyl-tRNA synthetase [Clostridium cellulolyticum H10] Length = 461 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 165/471 (35%), Positives = 244/471 (51%), Gaps = 45/471 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ I+ +R+Y CGPTVY++AHIGN R + D+L R+L+Y Sbjct: 1 MKVFNTLSRQKEEFKPINDKEVRIYSCGPTVYNYAHIGNLRTYVFMDILRRVLQY--NGY 58 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 + +V NITD+ +DK+++ AR E P I T F+KD L Sbjct: 59 SLKHVMNITDVGHLVSDEDEGEDKMVKGAR-EQKKTPWE-----IAEYYTSVFMKDIRAL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P P+AT HIP+M+ + ++ G+ YE ++ I FD YG SR +++Q Sbjct: 113 NIQVPEIVPKATEHIPEMLEFVHGLVDSGYGYETSDGIYFDIQKFEGYGKLSRANLEDQI 172 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP--GWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 G RV K++PADF LWK++ P E W S WG G PGWHIECSAM YLG FD Sbjct: 173 AGARVEVNEEKRHPADFALWKKA-PKEHIMQWPSEWGMGYPGWHIECSAMGRKYLGDTFD 231 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTA-NIWIHNGFLNLEGRKMSKSNGNFITINEL 291 IH GG+D I HHENEIAQS ++K+A N W+H F+ + KMSKS GN TI+ L Sbjct: 232 IHTGGVDHIPVHHENEIAQSEAL--LKKSAVNYWMHGEFMMVNNGKMSKSLGNTYTIDNL 289 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----KGII 347 E + + R L HYR ++FT + A++ ++ + S K + Sbjct: 290 KE------KGYDPMAFRYMCLNAHYRNKLNFTWDVMQSAQVSYDRFVEGVLSHKDGKEQV 343 Query: 348 DPAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 D AV+ ++ +DLN A+ R K+ + + I G + K+ Sbjct: 344 DSAVVKEFLSDFEDSINDDLNIPKALGVAWNAIRYGKKSQAIYELLTKMNSIFGFILDKK 403 Query: 400 HLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + IS I +L++ER K + +D IR +L++ G+ +ED N Sbjct: 404 KESTSEPEISPEIHRLLEERQEARAGKNWKRSDEIRDELKTMGYAVEDTAN 454 >gi|33592950|ref|NP_880594.1| cysteinyl-tRNA synthetase [Bordetella pertussis Tohama I] gi|61216293|sp|Q7VX96|SYC_BORPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33572598|emb|CAE42190.1| cysteinyl-tRNA synthetase [Bordetella pertussis Tohama I] gi|332382362|gb|AEE67209.1| cysteinyl-tRNA synthetase [Bordetella pertussis CS] Length = 486 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 157/414 (37%), Positives = 221/414 (53%), Gaps = 33/414 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R F+ +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR Sbjct: 2 LHIYNTLSRTKEPFKPAHAGQVRMYVCGMTVYDYCHLGHARMLVAFDVVQRWLRA--SGL 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T D L P +PR Sbjct: 60 AVDYVRNITDIDDKIIRRA------VETGRRIGEVTEYYIAAMHADERALGVQPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +M+ +I + G AY A + ++ + +YG S + +D+ + G RV Sbjct: 114 ATQYVGEMLDIIGRLESKGLAYRAEDGDVNYAVRGFADYGKLSGKSLDDLRAGERVAVGS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP WESP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 AKRDPLDFVLWKSAKPQEPDDTKWESPYGLGRPGWHIECSAMSKTLLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE------LLET 294 FPHHENEIAQ+ A AN+W+H G L ++ KMSKS GNF TI + L +T Sbjct: 234 KFPHHENEIAQTEGA-FGGALANVWMHCGPLMVDADKMSKSLGNFRTIRQTIAQGPLSDT 292 Query: 295 K-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKGIID- 348 + ++ A ++R ++ HYR P ++ L +A+ L + Q T+ +D Sbjct: 293 QAEYAVNPREAEMLRFFIVRNHYRSPQNYAPDNLVDAQNALDRLYQALQNTAADGQGVDW 352 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGI 394 A +A+ +D N+ A+ AL +LA E+ + + A +LG+ Sbjct: 353 SEEPQAQAFKAAMDDDFNSSGAVAALFELASEANRTGSARAVGQLKALGAVLGL 406 >gi|297184120|gb|ADI20239.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 495 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 246/491 (50%), Gaps = 65/491 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I N+L + F + N+ MYVCGPTVY H+GNAR FD+++R L++ G K Sbjct: 10 LNIENSLTGEKEAFVPVHEGNVGMYVCGPTVYSDVHLGNARTFTSFDMIFRYLKHI-GYK 68 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD +DKI ++AR E P+ I + T F K L Sbjct: 69 -VRYVRNITDAGHLENDADAGEDKISKKARLEQVE-PME-----IVQRYTVDFHKVMDAL 121 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI----PNYGSFSRRKI 170 P+ +P AT HI + I ++Q I+ G AYE+N + FD ++ +YG S RK+ Sbjct: 122 NAFPPSIEPTATGHISEQIEMVQTILDKGWAYESNGSVYFDVTAYNANGGDYGILSGRKM 181 Query: 171 DEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 DE + GTR + + K+NPADF LWK+++P W SPW G PGWH+ECSAMS+ YLG Sbjct: 182 DELQAGTRALDGQEEKRNPADFALWKKASPTHIMRWPSPWSIGFPGWHLECSAMSTKYLG 241 Query: 229 KVFDIHGGGLDLIFPHHENEIAQ-SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 + FDIHGGG+DL FPHHE EIAQ S C+ K A W+H L L G++MSKS GN I Sbjct: 242 ETFDIHGGGMDLKFPHHECEIAQNSACSGH--KGARYWMHANMLTLNGKRMSKSTGNTIL 299 Query: 288 INELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTST 342 EL + + V+R M+ HY +DF+ L AE LL + T Sbjct: 300 PRELFAGDSPLLDKGFSPSVVRFFMMQAHYSSVLDFSNDALLAAEKGHDRLLGALEKLDT 359 Query: 343 ------SKGIIDPAV---LSALYNDLNT-------VSAIQALHKLARESTKNHDLLPIFN 386 S + P + A+ ++ NT AI+ + N L F Sbjct: 360 LVPSKESTIALQPWIDKCYQAMSDNFNTPILIAHLFEAIKWISTAEGNIGLNAGELETFK 419 Query: 387 ASAHILGIEVC-------------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 AS + E+ KE L+K +S+ IE Q RL K + +AD IR Sbjct: 420 ASLNAFTFELLGLRTKSADSSNAYKEALDKAMSLVIELRAQARL----NKDWGTADIIRD 475 Query: 434 QLESKGFILED 444 QL G L+D Sbjct: 476 QLHDAGIQLKD 486 >gi|33600720|ref|NP_888280.1| cysteinyl-tRNA synthetase [Bordetella bronchiseptica RB50] gi|61216294|sp|Q7W862|SYC_BORPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216296|sp|Q7WLL0|SYC_BORBR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33568320|emb|CAE32232.1| cysteinyl-tRNA synthetase [Bordetella bronchiseptica RB50] Length = 485 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 154/395 (38%), Positives = 215/395 (54%), Gaps = 30/395 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R F+ +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR Sbjct: 2 LHIYNTLSRTKEPFKPAHAGQVRMYVCGMTVYDYCHLGHARMLVAFDVVQRWLRA--SGL 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T D L P +PR Sbjct: 60 AVDYVRNITDIDDKIIRRA------VETGRRIGEVTEYYIAAMHADERALGVQPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +M+ +I + G AY A + ++ + +YG S + +D+ + G RV Sbjct: 114 ATQYVGEMLDIIGRLESKGLAYRAEDGDVNYAVRGFADYGKLSGKSLDDLRAGERVAVGS 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP WESP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 174 AKRDPLDFVLWKSAKPQEPDDTKWESPYGLGRPGWHIECSAMSKTLLGLPLDIHGGGPDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE------LLET 294 FPHHENEIAQ+ A AN+W+H G L ++ KMSKS GNF TI + L +T Sbjct: 234 KFPHHENEIAQTEGA-FGGALANVWMHCGPLMVDADKMSKSLGNFRTIRQTIAQGALSDT 292 Query: 295 K-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKGIID- 348 + ++ A ++R ++ HYR P ++ L +A+ L + Q T+ +D Sbjct: 293 QAEYAVNPREAEMLRFFIVRNHYRSPQNYAPDNLVDAQNALDRLYQALQNTAADGQGVDW 352 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTKN 378 A +A+ +D N+ A+ AL +LA E+ + Sbjct: 353 SEPQAQAFKAAMDDDFNSSGAVAALFELASEANRT 387 >gi|326773069|ref|ZP_08232353.1| cysteine--tRNA ligase [Actinomyces viscosus C505] gi|326637701|gb|EGE38603.1| cysteine--tRNA ligase [Actinomyces viscosus C505] Length = 530 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 167/513 (32%), Positives = 250/513 (48%), Gaps = 94/513 (18%) Query: 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y++ R I P + +Y+CG TV HIG+ R I FDVL R L E Sbjct: 29 LRLYDSAARAIVPLAPTATPGLVTIYLCGATVQGSPHIGHMRSGIAFDVLRRWL-----E 83 Query: 64 KC---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +C V +RN+TDIDDKI+ ++ P +P + ++F L APT Sbjct: 84 RCGQEVRLIRNVTDIDDKILSKSAAAEPPVPW----WAWAQRFEREFDAAYRALGVDAPT 139 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY--EANNEIIFDTSSIPNYGSFSRRKI-------D 171 ++PRAT HIP+MI L+Q ++ GHAY E+ N + +D S+P YGS + +++ D Sbjct: 140 YEPRATGHIPEMIDLVQRLLDAGHAYVGESGN-VYYDVRSLPGYGSLTNQRLEDLATTED 198 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLG 228 E ++ V + K++P DF LWK + P EP W++PWGRGRPGWH+ECSAMS YLG Sbjct: 199 ESQLDDDV--EADKRDPRDFALWKAAKPTEPADAAWDAPWGRGRPGWHLECSAMSRRYLG 256 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGG+DL FPHHENE AQS A A W+HN ++ ++G KMSKS GN + + Sbjct: 257 ETFDIHGGGIDLRFPHHENEQAQSHGAGW--GFARHWVHNAWVTIKGEKMSKSLGNSLVV 314 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------- 337 ELL + + A V+RLA+ H+R ++F+ + L +A L + Sbjct: 315 AELL-------KRYDAAVLRLALGTVHHRSTVEFSEETLADAAALWERLSGAILRAYEFC 367 Query: 338 ----------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALH-----------KLAREST 376 P + +A+ DLN A+ +H + A Sbjct: 368 DGGDANPVDAPAEQVRARALPAEFTAAMDEDLNLAGAMAVIHATLKALNVALTQAAPSGG 427 Query: 377 KNHD---------LLPIFNASAHILGIEVCKEHLNKNI---------SIAIEKL------ 412 + D L + +LG++ E + A+E L Sbjct: 428 QGADDALRASVTGLALDLRSQLDVLGLDPLSEPWRTRVLDGAGSSQGGAAMEALDRLIRH 487 Query: 413 -VQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ER K ++ AD +R +L G ++ED Sbjct: 488 DLEERAQARAAKDWARADALRDKLTGAGVVVED 520 >gi|154508503|ref|ZP_02044145.1| hypothetical protein ACTODO_01004 [Actinomyces odontolyticus ATCC 17982] gi|153798137|gb|EDN80557.1| hypothetical protein ACTODO_01004 [Actinomyces odontolyticus ATCC 17982] Length = 485 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 149/394 (37%), Positives = 217/394 (55%), Gaps = 48/394 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y++ ++ + P + +Y+CG TV H+G+ R + FD L R LR E Sbjct: 2 LHLYDSKSARVQPLTPVTPGKVGIYLCGATVQGSPHVGHLRAAVSFDTLIRWLRRSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ H S + ++F + L +PT++PR Sbjct: 61 -VTYVRNVTDIDDKIL------HKSAEAGWDWWAWAYRFEREFTQAYETLGVQSPTYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKM---GTRVP 180 AT HIP+ + L+Q +I GHAY + + + FD S P+YGS +R+++ + + ++ Sbjct: 114 ATGHIPEQLDLVQRLIDAGHAYSDGHGNVYFDVHSQPDYGSLTRQRLADMRTTEDDAQID 173 Query: 181 E--KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 E + K++P DF LWK S P EP W+SPWGRGRPGWH+ECSAMS YLG FDIHG Sbjct: 174 EVVEAGKRDPRDFALWKVSKPSEPATASWDSPWGRGRPGWHLECSAMSRRYLGDEFDIHG 233 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHHENE AQS A + A +W+HN ++ +G KMSKS GN ++I L E Sbjct: 234 GGIDLRFPHHENEQAQSHGAGW--EFARLWVHNAWVTTKGEKMSKSLGNVLSIGALTE-- 289 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------- 342 +PA +R A+ H+R I++ + L A + W + ST Sbjct: 290 -----EYPAVAVRWALSTVHHRSAIEWGAETLPAA---YAAWEKFSTFVARAIEAAGEAP 341 Query: 343 -SKGIIDPAVL-----SALYNDLNTVSAIQALHK 370 S+ + PA L +A+ +DLN A+ LH+ Sbjct: 342 ASEIALAPADLPEAFVAAMDDDLNVAGALAVLHE 375 >gi|187631656|sp|A2C808|SYC_PROM3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 499 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 182/506 (35%), Positives = 253/506 (50%), Gaps = 86/506 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL--YRLLRYYYG 62 +++ NTL R+ F + ++ +Y CG TVYD H+G+AR I +DVL Y L R Y Sbjct: 3 LRLTNTLTRRTEPFTPLKDGHVSIYCCGVTVYDLCHLGHARSYIAWDVLRRYLLWRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TDIDDKI++RA ++ S+ I+ +N + F +D L L P Sbjct: 61 --SVTFVQNFTDIDDKILKRAAEKKCSM------EHISEQNIEAFHQDMDALGILRPDRM 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 PRAT + + LI + G AY + ++ F YG S R ++EQ+ RV Sbjct: 113 PRATQCLDGIRALIGELETSGAAYSVDGDVYFAVMKHHGYGKLSGRDLNEQQQNADGRVA 172 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++ DF LWK + EP + SPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 173 DAEEARKQHSFDFALWKGAKTGEPSFPSPWGAGRPGWHIECSAMVREELGETIDIHLGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A ++ A W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 233 DLIFPHHENEIAQSEAATG-KQLARYWLHNGMVNVGGQKMSKSLGNFTTIRALLE----- 286 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA------------------EILLSKWPQ 339 S +P+ +RL +L HYR+P+DFT + A E L WP+ Sbjct: 287 --SGVSPMTLRLFILQAHYRKPLDFTADAINAAATGWKGLNAALGLGNIYAEAL--NWPE 342 Query: 340 TS-TSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLAR----------- 373 + ++ PA + AL +DLN+ AI L LAR Sbjct: 343 CKPLPQEVMQPAHSSTLEQCSEIRQHFIDALDDDLNSSGAIAVLFDLARPLRALANRLER 402 Query: 374 ------ESTKNHDLLP---IFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLI 418 + T +LLP + A++LG+E K E N+ I+ + R Sbjct: 403 GDTKAIQETAQLNLLPRWQLLVELANVLGLEAEKAAKLAPEGNNRVDENHIQLAIAARKE 462 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 + F+ AD IR +L ++G L D Sbjct: 463 AKAARDFAKADRIRDELRAQGIELID 488 >gi|284161561|ref|YP_003400184.1| cysteinyl-tRNA synthetase [Archaeoglobus profundus DSM 5631] gi|284011558|gb|ADB57511.1| cysteinyl-tRNA synthetase [Archaeoglobus profundus DSM 5631] Length = 474 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 176/494 (35%), Positives = 249/494 (50%), Gaps = 65/494 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +++ E + +RMYVCG T YD++HIG+AR + FDVL R L Y E Sbjct: 6 VRLYNTLTKEMEELKL--DKTVRMYVCGITAYDYSHIGHARTFVFFDVLRRYLEYEGHE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKI+ RA E I K +F+KD + L P + P+ Sbjct: 63 -VIYVQNFTDVDDKIVRRAVNE------GKTQKEIAEKFISEFLKDMSALNVKMPDYMPK 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 T+HI ++ +Q +I G+AYE NE + F + +YG S ++E R+ Sbjct: 116 VTDHIQDIVQAVQKLIELGYAYEVENEHGKDVYFHVPAFESYGKLSGMSLEELNR-HRIE 174 Query: 181 EKYHKKNPADFILWKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K++ DF LWK + + ++SPWG GRPGWHIECS MS+ YLG FDIHGG Sbjct: 175 PNPKKRDVKDFALWKSAKEDDFKAKAVFDSPWGYGRPGWHIECSVMSAKYLGVPFDIHGG 234 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENE AQS +E WIH F+ ++G KMSKS GN + I ++L Sbjct: 235 GKDLIFPHHENERAQSYALFGVE-PVRYWIHCDFVMIKGEKMSKSLGNIVKIRDVLNV-- 291 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----------------EI-LLSKWPQ 339 +GG V+R +L YR P+D++ + L A EI L + + Sbjct: 292 YGGE-----VLRYFLLTAFYRSPLDYSEKSLERAKNSYNYLKNTLINLDMEISALKSYGE 346 Query: 340 TSTSKGIIDPAV----LSALYNDLNTVSAIQALHKLARESTKN-HDL--------LPIFN 386 G DP+ + + +NT A+ H A+ KN +D+ F Sbjct: 347 DRKDMG-FDPSSFLKEFESAMDIMNTPKALAVFHSFAKAINKNLYDMSLKELESCFETFM 405 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + +LG+ E + IE LV+ER + K K F AD IR++L KG +L D Sbjct: 406 TFSKVLGLFENYERIPTLPKELIE-LVKEREVARKEKDFERADKIREKLREKGIMLID-- 462 Query: 447 NPDNGQRMTRWKQK 460 + TRW K Sbjct: 463 ----TPKGTRWLTK 472 >gi|327403405|ref|YP_004344243.1| cysteinyl-tRNA synthetase [Fluviicola taffensis DSM 16823] gi|327318913|gb|AEA43405.1| cysteinyl-tRNA synthetase [Fluviicola taffensis DSM 16823] Length = 517 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 55/491 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K + IYN+L + F+ I + MYVCGPT+Y H+GN R I FD++YR L + Sbjct: 30 KHPLLIYNSLSGEKEVFKPIIAGKVGMYVCGPTLYSEPHMGNMRTFINFDLIYRYLLHLG 89 Query: 62 GEKCVTYVRNITDID----------DKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 + V YVRNITD D I + AR E ++ I+ N + +D Sbjct: 90 LQ--VKYVRNITDAGHITNSAGEAVDSIGKAARVEQVQ-----SLEIVYKYNVK--FQDL 140 Query: 112 TRL-ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 R+ L P+ +P AT HI + I +I+ II +G AY N + FD + YG S Sbjct: 141 QRIYNLLPPSIEPTATGHIQEQIEVIEKIIENGFAYVVNGSVYFDVRAYGEKFEYGILSG 200 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPMEPG-WESPWGRGRPGWHIECSAMSSH 225 RK+DE TR + + K+ ADF LWK+S P + W SPWG G PGWHIEC+AMS+ Sbjct: 201 RKVDELAEETRELNAQEEKRFFADFALWKKSNPDDMQIWRSPWGDGNPGWHIECTAMSTK 260 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGGLDL FPHHE+EIAQSC + + AN W+H LN+ G+KMSKS GN+ Sbjct: 261 YLGDQFDIHGGGLDLKFPHHEDEIAQSCGSAGV-SPANYWMHANMLNVNGQKMSKSLGNY 319 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 E+++ T + + VIR M+ HYR +DFT L AE ++ + Sbjct: 320 FLPKEIVDGTTDVFDKPYSPQVIRFCMMQAHYRSTLDFTPDSLNAAEKGFTRLSEAYEKL 379 Query: 345 GIID---------PAVLSALY----NDLNTVSAIQALHKLAR--------ESTKNHDLLP 383 G ++ PA++ + Y +D N + +L + + ++T + D L Sbjct: 380 GSLEVKETSSQDVPALVDSFYKAMNDDFNAPMLVASLFEAVKFINTVSEGKATISADDLE 439 Query: 384 IFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK-------FSSADYIRKQLE 436 I +V + K+ + A E L ++L M+K +S++D IR +L Sbjct: 440 ILTKEFTGFVFDVLGLSIEKSTAGANEALTATMDLVLDMRKSARENKDWSTSDKIRDRLA 499 Query: 437 SKGFILEDYKN 447 G +++D K+ Sbjct: 500 EAGIVVKDGKD 510 >gi|313206920|ref|YP_004046097.1| cysteinyl-tRNA synthetase [Riemerella anatipestifer DSM 15868] gi|312446236|gb|ADQ82591.1| cysteinyl-tRNA synthetase [Riemerella anatipestifer DSM 15868] gi|315023996|gb|EFT36998.1| cysteinyl-tRNA synthetase [Riemerella anatipestifer RA-YM] gi|325335643|gb|ADZ11917.1| Cysteinyl-tRNA synthetase [Riemerella anatipestifer RA-GD] Length = 486 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 249/487 (51%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L + F+ I N+ MYVCGPTVY H+GN R + FD +YR L Y G K Sbjct: 2 LKIYNSLTGEKEVFKPILDRNVGMYVCGPTVYSNVHLGNVRTFMSFDFIYRTLTYL-GYK 60 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 61 -VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKVLELF 113 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRRKI 170 L PT +P A HI + I L Q +I G AYE+N + FD + NYG S+R I Sbjct: 114 NLLPPTIEPTAIGHIMEQIELTQKLIDKGFAYESNGSVYFDVKAYNEKGLNYGELSKRNI 173 Query: 171 DEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 +E TR + + KKNP DF LWK+++P W SPWG G PGWH+EC+AMS+ YLG Sbjct: 174 EELFANTRDLDGQGEKKNPQDFALWKKASPAHIMRWNSPWGEGFPGWHLECTAMSTKYLG 233 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGG+DL FPHHE EIAQ + N W+H L + G++MSKS GN+I Sbjct: 234 EKFDIHGGGMDLKFPHHECEIAQGKACNGT-SPVNYWMHANMLTMNGQRMSKSTGNYILP 292 Query: 289 NELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----EIL 333 +L+ + F + + V+R + HYR +D + QRL EA E+L Sbjct: 293 MQLISGENDFFEKPFHPSVVRFCFMQAHYRSVLDISNEAMIASEKGFQRLMEAMNVLELL 352 Query: 334 LSKWPQTSTSKGIIDPAVLSALYNDLN----------TVSAIQALHKLARESTKNHDLL- 382 + T+ + +AL +D N V I AL K +ES DL+ Sbjct: 353 SANGNNTTFNIEDWKSKCHTALLDDFNAPILIAHLFEAVKFIFAL-KDGKESISETDLIL 411 Query: 383 ---PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + +LG++ +E+ N+ + A++ L+ R K K + +D IR QL KG Sbjct: 412 LKETLNRLVFDVLGLQKIEENNNEKLDQALQILINLRNEARKAKNWELSDQIRDQLLEKG 471 Query: 440 FILEDYK 446 L+D K Sbjct: 472 IELKDGK 478 >gi|268679683|ref|YP_003304114.1| cysteinyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268617714|gb|ACZ12079.1| cysteinyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 466 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 250/479 (52%), Gaps = 46/479 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY++++++ F I+ + +++YVCGPTVYD AH+G+AR I FD+L R+L + V Sbjct: 3 IYDSVQKQKVNFIPIEENKVKLYVCGPTVYDDAHLGHARSAIAFDLLRRVLIALGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+V+N TDIDDKII++ + S+ +IT+ +++ + L +P+AT Sbjct: 61 TFVKNFTDIDDKIIKKMHESGKSL------EVITTYYIERYKAEMHALHVNDADIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 I ++I I +++ AY ++ I FDTS Y S S R ++E+ RV +K KK Sbjct: 115 ETIGEIIAFIDSMLQQKVAYATSDGIYFDTSKDSKYLSLSHRFVEEEASQARVEQKEEKK 174 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK----VFDIHGGGLDLIF 242 + DF LWK S EP + +P+G GRPGWHIECSAM +L DIH GG DL+F Sbjct: 175 DQKDFALWKFSKENEPSYPAPFGIGRPGWHIECSAMIEKHLASDGDFQIDIHAGGADLLF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQ+ C E A W+HNGF+ + G KMSKS GN + + L + Sbjct: 235 PHHENEAAQTRCKSHQE-LAKYWMHNGFVTISGEKMSKSLGNSFFLKDALAI-------Y 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLS 353 V+R +L THYR +F + L + L K + S + +L Sbjct: 287 SGEVLRFYLLATHYRANFNFAEEDLLNTKKRLDKLYRLKKRVFETTPSEASSSFKETMLE 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHI-----------LGIEVCKEH-- 400 AL +DLN A+ +L ++ + + D P A I LGI + + Sbjct: 347 ALSDDLNISKALASLDEMLSYANEMLDANPKDKAFKAITCANLQWIEALLGIGLYNPYHY 406 Query: 401 ----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +++ IAIE+L+ +R K K F++AD IR +LE+K L D N ++++ Sbjct: 407 FQMGVSEEEKIAIERLLNQRAEAKKAKDFATADEIRHKLEAKQIQLMDTVNGTQWEKVS 465 >gi|78777410|ref|YP_393725.1| cysteinyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251] gi|109894960|sp|Q30R91|SYC_SULDN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78497950|gb|ABB44490.1| cysteinyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251] Length = 466 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 243/470 (51%), Gaps = 48/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I+++ ++ EF + + +YVCGPTVYD AH+G+A+ +VFD+L R+L E V Sbjct: 3 IFDSAKKIKREFIPQEQGKVSLYVCGPTVYDDAHLGHAKSALVFDLLCRVLNANGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY RNITDIDDKII RA+++ N I +T T + K+ L P +P+AT Sbjct: 61 TYARNITDIDDKIINRAQEQ------NKTIKEVTDFYTDAYHKEMALLGISRPDIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + M L+Q ++ + HAY ++ ++ FDTSS Y + S R DE + RV K Sbjct: 115 ESLDAMYALVQKLLDNKHAYTTDDGDVYFDTSSDSKYLTLSNRVQDESEKLQRVQSSSQK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-----VFDIHGGGLDL 240 +NPADF LWK + SP+G+GRPGWH+ECSAM +L K DIHGGG DL Sbjct: 175 RNPADFALWKSIHDESVTFGSPFGKGRPGWHLECSAMIEKHLSKPNAKFAVDIHGGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENE AQ+ CA A W+HNGF+N++G KMSKS GN + + L + Sbjct: 235 LFPHHENEAAQTRCATD-HALAAYWMHNGFVNIDGEKMSKSLGNSFFLKDAL-------K 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAV 351 + V+R +L THYR +F + L A+ L K + K + Sbjct: 287 IYDGEVLRFYLLSTHYRSNFNFNEEDLATAKKRLDKIYRLKKRLFGVTYEDEKTDFKKEL 346 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNASAHILGI------ 394 L L +DLN +++ + ++ + + D L + ILG Sbjct: 347 LETLSDDLNISASLALIEEMITRANETLDTAGKHKELKREALSNLSFIEKILGFGIKNPY 406 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + +N+ I KL+++R K K F+++D +R ++ + G L D Sbjct: 407 EYFQFGVNEETKTEIAKLIEKRAEAKKSKDFAASDMLRDKILAYGVNLMD 456 >gi|78213484|ref|YP_382263.1| cysteinyl-tRNA synthetase [Synechococcus sp. CC9605] gi|109894956|sp|Q3AI74|SYC_SYNSC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78197943|gb|ABB35708.1| cysteinyl-tRNA synthetase [Synechococcus sp. CC9605] Length = 493 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 143/325 (44%), Positives = 189/325 (58%), Gaps = 25/325 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 ++ N+L + F+ + +Y CG TVYD H+G+AR I +DVL R L R Y Sbjct: 3 LRFTNSLTSRTEAFEPLTEGKASIYCCGVTVYDLCHLGHARSYINWDVLRRYLIWRGYD- 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY++N TDIDDKI+ RA +E ++ ++ +N + F D RL L Sbjct: 62 ---VTYIQNYTDIDDKILNRANEEGITM------QAVSERNIEAFEVDMGRLNILPADRM 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TR 178 PRAT I + LI + G AY ++ ++ FD S NYG S R D+Q+ G T Sbjct: 113 PRATGCIEGIQTLISELESKGAAYSSDGDVYFDISKAKNYGKLSGRDPDDQQQGASGRTA 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + EP WESPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 173 DGEESRKRHPFDFALWKGAKAGEPSWESPWGPGRPGWHIECSAMVRQELGQTIDIHLGGG 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A+ A +W+HNG +N+ G KMSKS GNF TI LL+ Sbjct: 233 DLVFPHHENEIAQSETANGT-TLAKLWMHNGMVNVGGTKMSKSLGNFTTIRALLD----- 286 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDF 322 S +P+ +RL +L HYR+P+DF Sbjct: 287 --SGISPMTLRLFVLQAHYRKPLDF 309 >gi|22299370|ref|NP_682617.1| cysteinyl-tRNA synthetase [Thermosynechococcus elongatus BP-1] gi|22295553|dbj|BAC09379.1| cysteinyl-tRNA synthetase [Thermosynechococcus elongatus BP-1] Length = 463 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 238/471 (50%), Gaps = 69/471 (14%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 + +Y CG TVYD+ H+G+AR + +DVL R L + V YV+N TDIDDKI+ RA + Sbjct: 1 MTIYACGVTVYDYCHLGHARSYVAWDVLRRYLTFL--GYTVHYVQNFTDIDDKILRRAYE 58 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + ++ ++ + + +D L L + PRAT IP++I LIQ ++ G+A Sbjct: 59 N------GETMATVSDRYIAAYHQDMAALNILPASAYPRATEVIPEIINLIQGLLDRGYA 112 Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVPEKYHKKNPADFILWKRSTPME 201 Y A ++ + + P+YG S R++++ G E+ K++P DF LWK + P E Sbjct: 113 YVAGGDVYYAVAQFPSYGKLSGRQLEQLMAGASGRIEEEEEQRKRHPLDFALWKAAKPEE 172 Query: 202 PG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 WE+PWG+GRPGWHIECSAM G DIH GG+DLIFPHHENEIAQS + Sbjct: 173 MSVYHPWEAPWGKGRPGWHIECSAMVRQAFGATVDIHCGGMDLIFPHHENEIAQSEAVTQ 232 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + A W+HNGF+ + KMSKS GNF TI +LL + +RL +L YR Sbjct: 233 -QPLARFWLHNGFVTVNTEKMSKSLGNFTTIRDLL------AQGLDPMALRLLVLQAQYR 285 Query: 318 EPIDFTVQRLTEA---------------EILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 +P+DFT + LT A +I L A A+ DLNT Sbjct: 286 KPLDFTPEALTAAAKGWQTLGEALHLHQQIPLPPIDAAEVRSHPKTEAFCQAMDEDLNTA 345 Query: 363 SAIQALHKLARESTKN---------------------HDLLPIFNASAHILGIEVCKEHL 401 +A+ + +LA+ + H L+ + A +LG+E KE Sbjct: 346 AALAVIFELAKTLNREQHRYLHGGGWGRSPAEVSRDWHTLVTL----AQVLGLE-AKEES 400 Query: 402 NKNISI-----AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 N +++ I+ L+ R + K ++ +D +R L ++G L D K+ Sbjct: 401 NPALTVELTDEEIQALIAARTAARQAKNYTESDRLRDLLLAQGVKLVDQKD 451 >gi|222834518|gb|EEE72995.1| predicted protein [Populus trichocarpa] Length = 241 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/249 (51%), Positives = 157/249 (63%), Gaps = 8/249 (3%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +YN+L RK + P + MYVCGPTVY+FAHIGNARP +VFDVL RLLR Sbjct: 1 MTSALSLYNSLTRKKEPLRTGQPGRVTMYVCGPTVYNFAHIGNARPAVVFDVLARLLREQ 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y E V Y RN TD+DDKI A E +PI IT++ + +D L L P Sbjct: 61 YAE--VVYARNFTDVDDKINASAAAE--GVPIG----TITARYIDAYHEDMRALGVLIPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR T HIP +I LIQ +I +G+AY + ++F S P YG S R+ ++ G RV Sbjct: 113 LEPRVTEHIPAIIALIQRLIANGNAYVEQDHVLFHVPSFPAYGQLSGRRPEDMLAGVRVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK ST PGW SPWGRGRPGWHIECSAM +LG DIHGGG DL Sbjct: 173 VAPYKRDPLDFVLWKPSTAEVPGWPSPWGRGRPGWHIECSAMIGQHLGSTIDIHGGGQDL 232 Query: 241 IFPHHENEI 249 IFPHHENEI Sbjct: 233 IFPHHENEI 241 >gi|313680064|ref|YP_004057803.1| cysteinyl-tRNA synthetase [Oceanithermus profundus DSM 14977] gi|313152779|gb|ADR36630.1| cysteinyl-tRNA synthetase [Oceanithermus profundus DSM 14977] Length = 482 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 178/503 (35%), Positives = 255/503 (50%), Gaps = 74/503 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +Y+T++RK EF P ++ +YVCGPTVY AH+G+ R +V+DVL R L + G + V Sbjct: 5 LYDTMQRKKVEFVPATPGHVGIYVCGPTVYSDAHLGHGRAAVVYDVLRRWL-MHEGYR-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V N+TD+ +DKI +RA+ E P+ + K ++ +DT L Sbjct: 63 RFVSNVTDVGHLTDDADEGEDKIAKRAKLEKLE-PME-----VADKYFWRYFEDTDALNV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P+ PRA+ HI + I L + ++ G+AYE N + F + P+YG S R++++Q+ G Sbjct: 117 AKPSITPRASGHIIEQIELTKELLERGYAYEVNGSVYFRAAKWPDYGKLSGRRLEDQQAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 RV + K++P D+ LWKR+ EPG W SPWG G PGWHIECSAMS YLG+ FD Sbjct: 177 ARVEVRGEKEDPRDWALWKRA---EPGHLMRWPSPWGEGYPGWHIECSAMSLKYLGEGFD 233 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+DL FPHHE EIAQ+ A A W+H+ + L G KM+KS GNFIT+ ELL Sbjct: 234 IHAGGIDLQFPHHECEIAQAEAAG--HAFARYWMHHNHVLLNGEKMAKSTGNFITLRELL 291 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTSTSKGIID 348 E + V+RL +L +HYR +D T L A LL + + G Sbjct: 292 EKHE-------PMVVRLYLLQSHYRSVLDLTDAGLEAAGRAYYRLLEAYRSLRSGLGRAR 344 Query: 349 PAVLSALY---------------NDLNTVSAIQALHKLARESTK-----------NHDLL 382 L+AL +DL T A+ AL E K L Sbjct: 345 EGTLTALEEAIDRLEGSFAEAMNDDLGTPEALAALFSFLPELNKALAAAQGRASLERALG 404 Query: 383 PIFNASAHILGI---EVCKEHL-NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + +LG+ V + L + IE L+++R + F +AD IR +L Sbjct: 405 TLERLGEGVLGLFPPRVLEARLEGPLLEGLIELLLEQREAARSRRDFPAADAIRARLGEL 464 Query: 439 GFILEDYKNPDNGQRMTRWKQKP 461 G ++ED P T+W+ P Sbjct: 465 GVVVED--TPHG----TKWRLAP 481 >gi|227834035|ref|YP_002835742.1| Cysteinyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] gi|227455051|gb|ACP33804.1| Cysteinyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] Length = 473 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 246/481 (51%), Gaps = 63/481 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R EF+ + P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 4 LRIFDTATRSQREFEPVRPGHASIYLCGATPQSQPHIGHLRSGVAFDILRRWLSAQGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V VRN+TDIDDKI+ +A + + P + +S ++F K L L P+ +PR Sbjct: 63 -VALVRNVTDIDDKILTKAAENNR--PWWEWVSTYE----REFTKAYNTLGVLPPSVEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----------EIIFDTSSI-----PNYGSFSRRK 169 AT + QM+ +Q +I G AY N + FD ++ +YGS S + Sbjct: 116 ATGFVTQMVEYMQRLIDAGFAYAVPNGTAGGEDDSGSVYFDVAAWNATEGSDYGSLSGNR 175 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 ++E + G + K++P DF LWK + P EP W +PWGRGRPGWH+ECSAMS++YLG Sbjct: 176 VEEMEQGE--TDNAGKRSPQDFALWKAAKPGEPSWPTPWGRGRPGWHLECSAMSTYYLGG 233 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIH GGLDL FPHHENEIAQS A +K AN W+HN ++ + G KMSKS GN ++I Sbjct: 234 EFDIHCGGLDLQFPHHENEIAQSHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLSIA 291 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTS 341 +LE + PV +R + HYR ++++ LTEA E + K+ + Sbjct: 292 NMLEIVR--------PVELRYYLGSAHYRSVLEYSEAALTEAAAGYRRIEDFVGKF--EN 341 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHD----LLPIFNASAHIL 392 KG PA A+ +D+ A+ +H R K N + L A A +L Sbjct: 342 VEKGEWTPAFEEAMNDDIAVPKALAEIHTTVRAGNKALSEGNREEAKRLAGAVRAMAAVL 401 Query: 393 GIEVCKEHLNKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 G + E + + + + ++ R K +++AD +R +L + G + Sbjct: 402 GFDPLDEQWKDSGEESGAEAALDVLVRAELERRTTARAEKDWATADAVRDRLAAAGITIT 461 Query: 444 D 444 D Sbjct: 462 D 462 >gi|32490992|ref|NP_871246.1| hypothetical protein WGLp243 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173143|sp|Q8D2V9|SYC_WIGBR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|25166198|dbj|BAC24389.1| cysS [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 463 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 258/468 (55%), Gaps = 44/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL+ K +F+ I+ + + +YVCG T YD HIG+AR ++ FD++ + +Y G + Sbjct: 2 MKIFNTLKNKKEKFKPINSNIVNVYVCGITPYDLCHIGHARTLVFFDIMIKYFQYK-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 Y+RNITDIDDKII +A + + ++++ ++ D L + P ++PR Sbjct: 61 -TNYIRNITDIDDKIINKAFHK------KEKYNLLSDFMIKEMKYDLNSLNIMPPNNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKM--GTRVPE 181 TNHI ++ +I+ ++ HAY +++FD S+ +YG S+R +++++ + Sbjct: 114 VTNHISDILEMIKILLEKKHAYISKTGDVVFDISTYRDYGKLSKRFEEKKQLLNNKKNKI 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K DF+LWK S P EP W+SPWG GRPGWHIECSA+S LG +FDIHGGG DLI Sbjct: 174 NFKTKKEKDFVLWKMSKPNEPSWKSPWGHGRPGWHIECSAISDKTLGNIFDIHGGGSDLI 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA+ + N W+H G + + KMSKS GN I E++ + Sbjct: 234 FPHHENEIAQSKCANS-KFNVNFWVHTGMVMFKKEKMSKSLGNSCLIREIV-------KK 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVL 352 + A ++ + +HYR I ++V + +++ + + ++ + K + Sbjct: 286 YDADTLKYFLTSSHYRSQITYSVDNMEKSKSAVKRLYRSLHNTNYFYNLPIKEKFTSKFI 345 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI--EVCKEHLN 402 A+ +D NT A L ++R+ K + L + ++I+GI E +LN Sbjct: 346 DAMNDDFNTPKAYSVLFSISRQINYFKNKNPEKANQLSTVLKNLSNIIGILNENPDSYLN 405 Query: 403 KNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + I+ ++++R K+K++ AD RK+L+ G LED Sbjct: 406 NKLKFSKDKINKIKSIIKKRENYRKLKQWEKADEERKKLKYIGVCLED 453 >gi|33596886|ref|NP_884529.1| cysteinyl-tRNA synthetase [Bordetella parapertussis 12822] gi|33573587|emb|CAE37581.1| cysteinyl-tRNA synthetase [Bordetella parapertussis] Length = 551 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 154/395 (38%), Positives = 215/395 (54%), Gaps = 30/395 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R F+ +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR Sbjct: 68 LHIYNTLSRTKEPFKPAHAGQVRMYVCGMTVYDYCHLGHARMLVAFDVVQRWLRA--SGL 125 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T D L P +PR Sbjct: 126 AVDYVRNITDIDDKIIRRA------VETGRRIGEVTEYYIAAMHADERALGVQPPDREPR 179 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +M+ +I + G AY A + ++ + +YG S + +D+ + G RV Sbjct: 180 ATQYVGEMLDIIGRLESKGLAYRAEDGDVNYAVRGFADYGKLSGKSLDDLRAGERVAVGS 239 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP WESP+G GRPGWHIECSAMS LG DIHGGG DL Sbjct: 240 AKRDPLDFVLWKSAKPQEPDDTKWESPYGLGRPGWHIECSAMSKTLLGLPLDIHGGGPDL 299 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE------LLET 294 FPHHENEIAQ+ A AN+W+H G L ++ KMSKS GNF TI + L +T Sbjct: 300 KFPHHENEIAQTEGA-FGGALANVWMHCGPLMVDADKMSKSLGNFRTIRQTIAQGALSDT 358 Query: 295 K-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKGIID- 348 + ++ A ++R ++ HYR P ++ L +A+ L + Q T+ +D Sbjct: 359 QAEYAVNPREAEMLRFFIVRNHYRSPQNYAPDNLVDAQNALDRLYQALQNTAADGQGVDW 418 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTKN 378 A +A+ +D N+ A+ AL +LA E+ + Sbjct: 419 SEPQAQAFKAAMDDDFNSSGAVAALFELASEANRT 453 >gi|124022576|ref|YP_001016883.1| cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303] gi|123962862|gb|ABM77618.1| Cysteinyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303] Length = 511 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 182/506 (35%), Positives = 253/506 (50%), Gaps = 86/506 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL--YRLLRYYYG 62 +++ NTL R+ F + ++ +Y CG TVYD H+G+AR I +DVL Y L R Y Sbjct: 15 LRLTNTLTRRTEPFTPLKDGHVSIYCCGVTVYDLCHLGHARSYIAWDVLRRYLLWRGY-- 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TDIDDKI++RA ++ S+ I+ +N + F +D L L P Sbjct: 73 --SVTFVQNFTDIDDKILKRAAEKKCSM------EHISEQNIEAFHQDMDALGILRPDRM 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 PRAT + + LI + G AY + ++ F YG S R ++EQ+ RV Sbjct: 125 PRATQCLDGIRALIGELETSGAAYSVDGDVYFAVMKHHGYGKLSGRDLNEQQQNADGRVA 184 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++ DF LWK + EP + SPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 185 DAEEARKQHSFDFALWKGAKTGEPSFPSPWGAGRPGWHIECSAMVREELGETIDIHLGGA 244 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A ++ A W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 245 DLIFPHHENEIAQSEAATG-KQLARYWLHNGMVNVGGQKMSKSLGNFTTIRALLE----- 298 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA------------------EILLSKWPQ 339 S +P+ +RL +L HYR+P+DFT + A E L WP+ Sbjct: 299 --SGVSPMTLRLFILQAHYRKPLDFTADAINAAATGWKGLNAALGLGNIYAEAL--NWPE 354 Query: 340 TS-TSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLAR----------- 373 + ++ PA + AL +DLN+ AI L LAR Sbjct: 355 CKPLPQEVMQPAHSSTLEQCSEIRQHFIDALDDDLNSSGAIAVLFDLARPLRALANRLER 414 Query: 374 ------ESTKNHDLLP---IFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLI 418 + T +LLP + A++LG+E K E N+ I+ + R Sbjct: 415 GDTKAIQETAQLNLLPRWQLLVELANVLGLEAEKAAKLAPEGNNRVDENHIQLAIAARKE 474 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 + F+ AD IR +L ++G L D Sbjct: 475 AKAARDFAKADRIRDELRAQGIELID 500 >gi|309812587|ref|ZP_07706332.1| cysteine--tRNA ligase [Dermacoccus sp. Ellin185] gi|308433438|gb|EFP57325.1| cysteine--tRNA ligase [Dermacoccus sp. Ellin185] Length = 483 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 165/494 (33%), Positives = 246/494 (49%), Gaps = 65/494 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R++ +F+ ++P + +Y+CG T HIG+ R + FDVL L +G Sbjct: 3 LQIFDTATRELRDFEPVEPGKVGIYICGLTTQGSPHIGHLRFAVAFDVLRNWLTRGHGYD 62 Query: 65 CVTYVRNITDIDDKIIER-ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT VRN+TDIDDKI+ + A P A S + + T + L PT++P Sbjct: 63 -VTLVRNVTDIDDKILRKSAEAGEPWF----AWSYLHERETSDALD---ILGVQRPTYEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAY---EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT H+ M+ L++ +I GHAY + + ++ FD S YG+ +R+K+D+ + Sbjct: 115 RATGHVTDMVELMELLIERGHAYPAADGSGDVYFDVKSFDEYGALTRQKLDDMEDAADAD 174 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK EP W +PWG GRPGWH+ECSAM+ +LG FDIHGGG Sbjct: 175 PR-AKRDPRDFALWKGRKADEPASANWPTPWGEGRPGWHLECSAMARRWLGDTFDIHGGG 233 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DL FPHHENE AQS A A W+HNG++ L G KMSKS GN +++ EL +T + Sbjct: 234 IDLRFPHHENEQAQSRAAGL--GFARYWMHNGWVTLSGEKMSKSLGNTLSVTELTKTVR- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGII 347 V+R + HYR I++T L EA + + TS + Sbjct: 291 ------PLVLRYYLGSVHYRSTIEYTSDSLAEANAAVERIEGFLRRALGEDAVLTSADLA 344 Query: 348 D----PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---------FNASAHILGI 394 D A ++ + +DLN A+ A RE D + A +LG+ Sbjct: 345 DVELPEAFVATMDDDLNVSGALAACFDAIREGNTAIDEADVRRVEELALQVAAMTDVLGV 404 Query: 395 -----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + + + ++ LV++R K F++AD IR QL G ++E Sbjct: 405 NPLDPKWSGNGSADGDETKRALGALVDALVEQRKTARAAKDFATADIIRDQLADAGVVVE 464 Query: 444 DYKNPDNGQRMTRW 457 D PD RW Sbjct: 465 D--TPDG----ARW 472 >gi|94985814|ref|YP_605178.1| cysteinyl-tRNA synthetase [Deinococcus geothermalis DSM 11300] gi|123381854|sp|Q1IXM5|SYC_DEIGD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|94556095|gb|ABF46009.1| cysteinyl-tRNA synthetase [Deinococcus geothermalis DSM 11300] Length = 497 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 181/498 (36%), Positives = 251/498 (50%), Gaps = 81/498 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +Y+T++R+ F P + MY+CGPTVY AH+G+A+ + FDV+ R L ++G + Sbjct: 20 IVLYDTMQRQKVPFVPSVPGRVGMYLCGPTVYSDAHLGHAKKEVAFDVIRRTL-LHFGYQ 78 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV N+TD+ +DKI RA E P+ + K FV+D L Sbjct: 79 -VRYVTNVTDVGHLQDDSDDGEDKIARRAALERLE-PME-----VADKYFWSFVEDMEAL 131 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P+ PRAT HIP+ I LI+ +I GHAY ++ + FD S P YG S R++DE + Sbjct: 132 NVLKPSINPRATGHIPEQIALIEELIERGHAYVSDGSVYFDVRSWPEYGKLSGRRLDELE 191 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKV 230 GTR + K++P DF LWKR+ EPG W SPWG G PGWHIECSAMS YLG+ Sbjct: 192 EGTREAVREEKRDPRDFALWKRA---EPGHLMRWASPWGEGFPGWHIECSAMSLKYLGEG 248 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDL FPHHE EIAQ+ A A W+HN + + G KMSKS GNF T+ Sbjct: 249 FDIHGGGLDLEFPHHEAEIAQAEAAG--HPFARYWLHNNMVTVGGEKMSKSKGNFTTLKA 306 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----EILLSK 336 L VIR ++ +HYR +F+ +RLTEA E L Sbjct: 307 LFAQHD-------PMVIRFLLVSSHYRSITEFSDAAFESARSGYRRLTEALHEIERRLPA 359 Query: 337 WPQTSTSKGIIDPAVL-----------SALYNDLNTVSAIQALHKLARE--------STK 377 P DPA+L A+ +D NT A+ AL L + Sbjct: 360 APDQD------DPALLEKIAGHIRTFEDAMRDDFNTPRAVAALFGLTTDVNAALNAGEVG 413 Query: 378 NHDLLPIFNA----SAHILGI----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 L +A +LG+ +E ++ ++ +E ++Q R K+++ AD Sbjct: 414 RQALTAARDAYRTLGGGVLGLFAEGRTEREDDSQIVNALMELVLQARQHYRLQKQYAQAD 473 Query: 430 YIRKQLESKGFILEDYKN 447 +R L + G +ED + Sbjct: 474 ELRNTLAAVGVTVEDTRE 491 >gi|295135612|ref|YP_003586288.1| cysteinyl-tRNA synthetase [Zunongwangia profunda SM-A87] gi|294983627|gb|ADF54092.1| cysteinyl-tRNA synthetase [Zunongwangia profunda SM-A87] Length = 494 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 173/493 (35%), Positives = 263/493 (53%), Gaps = 58/493 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++KIYN++ + F+ I+ S + MYVCGPTVY H+GN R I FD+++R L++ Sbjct: 6 EQQLKIYNSISGEKEVFKPINDSYVGMYVCGPTVYSNVHLGNCRTFISFDLVFRYLKHL- 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD +D+I ++AR E P+ + K T F Sbjct: 65 GYK-VRYVRNITDAGHLENDAETGEDRIAKKARLEQIE-PME-----VVQKYTVDFHNIL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRR 168 + L P+ +P AT HI + I +I+ II G AYEAN + FD + +YG S R Sbjct: 118 EKFNNLPPSIEPTATGHIVEQIEIIKTIIDRGFAYEANGSVYFDVLKYNEEKHYGKLSGR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 I++ TR + + K+NP DF LWK++ P W SPW G PGWH+EC+ MS+ Y Sbjct: 178 AIEDMIANTRELAAQSDKRNPQDFALWKKAEPQHIMRWPSPWSDGFPGWHLECTVMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL FPHHE EIAQ A + + W+H L L G+KM+KS GN I Sbjct: 238 LGEEFDIHGGGMDLKFPHHECEIAQGEAATG-KDPVHYWMHANMLTLNGKKMAKSTGNNI 296 Query: 287 TINELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------------- 331 EL K + G+++ V R ML HYR +DF+ + L+ +E Sbjct: 297 LPEELFSGKNEVIGKAFSPNVARFFMLQAHYRSILDFSKEALSASEKGFNRLIEAYASID 356 Query: 332 ---------ILLSKWPQT---STSKGIIDPAVLSALYNDLNTVSAI--QALHKLARESTK 377 I L++W Q+ + + P +++ L++ + ++AI ++L A + + Sbjct: 357 DLPESSASTINLAEWKQSCYDAMNDDFNSPILIAKLFDAVKWINAIKEESLKISAEDKLE 416 Query: 378 NHDLLPIFNASAHILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +L F ILG+ ++ L+ N +S A+E L++ R + F+++D IR Q Sbjct: 417 LKQVLHDF--LFDILGLRDGEKSLDNNSDKLSGAVELLIKLRAEARNNRDFATSDKIRDQ 474 Query: 435 LESKGFILEDYKN 447 L+ G L+D K+ Sbjct: 475 LQEMGIQLKDGKD 487 >gi|189219647|ref|YP_001940288.1| Cysteinyl-tRNA synthetase [Methylacidiphilum infernorum V4] gi|189186505|gb|ACD83690.1| Cysteinyl-tRNA synthetase [Methylacidiphilum infernorum V4] Length = 469 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 173/479 (36%), Positives = 253/479 (52%), Gaps = 44/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++NTL R++ I+P + +Y CGPTVY+ AHIGN R + D+L R L + G K Sbjct: 11 FQLFNTLSRRVEPINPINPPQVTIYACGPTVYNLAHIGNFRTFLCVDLLRRALELF-GYK 69 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + N TD+DDK I +R A+S T + +F KD L L P QPR Sbjct: 70 -VVHAMNYTDVDDKTIAASR------AAGVALSAYTQRYIDEFEKDMRSLHMLKPHFQPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEK 182 AT HI +MI I+ ++ HAY + + F +S P YG S + D+ K+GT+V ++ Sbjct: 123 ATEHIEKMIEFIRQLLEKDHAYIGVDGSVYFRINSFPEYGKLSHLEKDKLKLGTQVFSDE 182 Query: 183 YHKKNPADFILWK--RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 Y K+N DF LWK ++ E GW SPW GRPGWHIECS MS YLG+ DIH GG+DL Sbjct: 183 YVKENYGDFALWKARKTEDGEIGWISPWEIGRPGWHIECSTMSMCYLGEEIDIHCGGVDL 242 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W H + +EG KMSKS GN T+ +++ K F R Sbjct: 243 IFPHHENEIAQSESVTG-KNFVRHWFHVSHVLVEGEKMSKSLGNIYTLRDII-NKGFSPR 300 Query: 301 SWPAPVIRLAMLM-THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------- 350 V+R +L +HYR+ ++FT Q + + L + Q + I P+ Sbjct: 301 -----VLRYHLLTSSHYRQTLNFTWQGMESSREALKRIDQWLSRLQNIPPSQFQQQEGPE 355 Query: 351 -------VLSALYNDLNTVSAIQALHKLARESTKNHD---LLPIFNASAHILGIEVCKEH 400 + AL +DLN A+ L + R + + D LP + + ++ + Sbjct: 356 QQLFVRRFIEALADDLNITEAVGHLFEWIRLTNRLMDKGEALPQIDKAWQLVDAVLGVGE 415 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 LN + I+ L+ R K K + +D IR++L+ G+I++D P+ GQ++ WK+ Sbjct: 416 LNVQVPPEIQSLLAIRAEARKHKDWQKSDNIRQKLQEMGWIVQD--TPE-GQKV--WKE 469 >gi|145219092|ref|YP_001129801.1| cysteinyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265] gi|145205256|gb|ABP36299.1| cysteinyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265] Length = 483 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 170/489 (34%), Positives = 250/489 (51%), Gaps = 66/489 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R+ F + P + +YVCGPTVY AH+G+A+ + FDV+ R LR G + Sbjct: 3 LAIYNSLGREKQPFTPLHPGMVGIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRQS-GYR 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV+NITD+ +DKI +AR E P+ I T+ F +D R+ Sbjct: 62 -VKYVQNITDVGHLSDDADEGEDKIARQARLEKTD-PME-----IAQYYTRSFYEDMDRM 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS-RRKIDEQ 173 L P P AT HIP+ I L++ ++ GHAYE N + F S P YG S R ++ Sbjct: 115 GVLRPNIAPLATGHIPEQIALVEALVKSGHAYEVNGNVYFSVESFPGYGKLSGRTDLEAV 174 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTP---MEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 + G RV + K+NP+DF LWK++ M+ W SPWG G PGWH+ECSAMS YLG+ Sbjct: 175 QSGARVGVRSEKRNPSDFALWKKAEESHLMQ--WSSPWGMGYPGWHLECSAMSMKYLGET 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIHGGG++ FPHHE EIAQS A+ + W+HN + + G KM KS N + + E Sbjct: 233 IDIHGGGMENRFPHHECEIAQSEAANG-KPYVRYWMHNNMVTVNGTKMGKSLKNAVNLKE 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------ST 342 + T P+ IR +L +HYR P+D++ + + L K +T + Sbjct: 292 IFTTIN--------PLAIRFFILQSHYRSPLDYSDAAIAASTAGLQKLRETRQRLQGATA 343 Query: 343 SKGIIDPAVL-----SALYNDLNTVSAIQALHKLARESTKNHDL-----LPIFNASAHIL 392 G ++ A A+ +D NT AI AL A+ D P A+A + Sbjct: 344 GTGAMNVAPFRERFREAMDDDFNTPVAIAALFDFAKALNAALDRPEGLDQPSLGAAADLF 403 Query: 393 ---GIEVCK--EHLNKNIS----------IAIEKLVQERLILLKMKKFSSADYIRKQLES 437 G++V EH + +I A++ L++ R K F+++D IR L++ Sbjct: 404 TMAGVDVLGILEHDSGSIGNGAGDRQRLEGAMKVLMELRSAARSEKDFATSDLIRDGLKA 463 Query: 438 KGFILEDYK 446 G ++D + Sbjct: 464 AGIEIKDTR 472 >gi|262183479|ref|ZP_06042900.1| cysteinyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] Length = 470 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 246/481 (51%), Gaps = 63/481 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R EF+ + P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 1 MRIFDTATRSQREFEPVRPGHASIYLCGATPQSQPHIGHLRSGVAFDILRRWLSAQGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V VRN+TDIDDKI+ +A + + P + +S ++F K L L P+ +PR Sbjct: 60 -VALVRNVTDIDDKILTKAAENNR--PWWEWVSTYE----REFTKAYNTLGVLPPSVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----------EIIFDTSSI-----PNYGSFSRRK 169 AT + QM+ +Q +I G AY N + FD ++ +YGS S + Sbjct: 113 ATGFVTQMVEYMQRLIDAGFAYAVPNGTAGGEDDSGSVYFDVAAWNATEGSDYGSLSGNR 172 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 ++E + G + K++P DF LWK + P EP W +PWGRGRPGWH+ECSAMS++YLG Sbjct: 173 VEEMEQGE--TDNAGKRSPQDFALWKAAKPGEPSWPTPWGRGRPGWHLECSAMSTYYLGG 230 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIH GGLDL FPHHENEIAQS A +K AN W+HN ++ + G KMSKS GN ++I Sbjct: 231 EFDIHCGGLDLQFPHHENEIAQSHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLSIA 288 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTS 341 +LE + PV +R + HYR ++++ LTEA E + K+ + Sbjct: 289 NMLEIVR--------PVELRYYLGSAHYRSVLEYSEAALTEAAAGYRRIEDFVGKF--EN 338 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHD----LLPIFNASAHIL 392 KG PA A+ +D+ A+ +H R K N + L A A +L Sbjct: 339 VEKGEWTPAFEEAMNDDIAVPKALAEIHTTVRAGNKALSEGNREEAKRLAGAVRAMAAVL 398 Query: 393 GIEVCKEHLNKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 G + E + + + + ++ R K +++AD +R +L + G + Sbjct: 399 GFDPLDEQWKDSGEESGAEAALDVLVRAELERRTTARAEKDWATADAVRDRLAAAGITIT 458 Query: 444 D 444 D Sbjct: 459 D 459 >gi|153824225|ref|ZP_01976892.1| cysteinyl-tRNA synthetase [Vibrio cholerae B33] gi|126518251|gb|EAZ75476.1| cysteinyl-tRNA synthetase [Vibrio cholerae B33] Length = 263 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/271 (47%), Positives = 175/271 (64%), Gaps = 10/271 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------AETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 HHENEIAQSCCA + N W+H+G + ++ Sbjct: 234 HHENEIAQSCCAHDTQYV-NTWMHSGMVMVD 263 >gi|227502088|ref|ZP_03932137.1| cysteinyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] gi|227077147|gb|EEI15110.1| cysteinyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] Length = 468 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 170/482 (35%), Positives = 249/482 (51%), Gaps = 61/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 ++I++T R +F+ I P + +Y+CG T HIG+ R + FD+L R LL Y Sbjct: 4 LRIFDTATRSQRDFEPIRPGHASIYLCGATPQAQPHIGHLRSGVAFDILRRWLLAQGYD- 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V VRN+TDIDDKI+ +A + N S ++F K L L P+ +P Sbjct: 63 --VALVRNVTDIDDKILTKAAEN------NRPWWEWVSTYEREFTKAYNLLGVLPPSVEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYE------ANNEIIFDTSSI-----PNYGSFSRRKIDE 172 RAT + QM+ +Q +I G AY A + FD + +YG+ S +++E Sbjct: 115 RATGFVTQMVEYMQRLIDAGFAYPVPAPDGAAGSVYFDVEAWTKAEGSDYGALSGNRVEE 174 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G + K++P DF LWK + P EP W +PWGRGRPGWH+ECSAMS++YLG FD Sbjct: 175 MEQGES--DNAGKRSPLDFALWKAAKPGEPSWPTPWGRGRPGWHLECSAMSTYYLGSNFD 232 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GGLDL FPHHENEIAQS A +K AN W+HN ++ + G KMSKS GN ++I+ +L Sbjct: 233 IHCGGLDLQFPHHENEIAQSHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLSISNML 290 Query: 293 ETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSK 344 E + PV +R + HYR ++++ LTEA E + ++ + Sbjct: 291 ELVR--------PVELRYYLGSAHYRSVLEYSESALTEAAAGYRRIEGFVKRF--AGVER 340 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNAS----AHILGIE 395 G P A+ +D+ A+ A+H R K + D A AH+LG + Sbjct: 341 GDWTPDFEDAMNDDIAVPKALAAIHTTVRAGNKDLAAGDEDAARAKAAQVRGMAHVLGFD 400 Query: 396 VCKEHLNKNIS---IAIEKLVQ---ERLILLKMKK-FSSADYIRKQLESKGFILEDYKNP 448 + S A++ LVQ ER + +K F++AD +R +L + G + D P Sbjct: 401 PLEWEDGGEASGADAALDALVQAELERRTQARAEKDFATADAVRDRLTAAGITITD--TP 458 Query: 449 DN 450 D Sbjct: 459 DG 460 >gi|325962199|ref|YP_004240105.1| cysteinyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] gi|323468286|gb|ADX71971.1| cysteinyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] Length = 488 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 170/494 (34%), Positives = 242/494 (48%), Gaps = 64/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T ++ F + +Y CG TV H+G+ R I FD L R L + G + Sbjct: 3 LRFYDTASAEVRNFVPLVEGKASLYYCGATVQGMPHVGHIRSAIAFDQLTRWLAFR-GLR 61 Query: 65 CVTYVRNITDIDDKIIERARQ--------EHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 VT VRN+TDIDDKI+ ++ E +P + ++ + ++F+K L Sbjct: 62 -VTVVRNVTDIDDKILAKSEASFAPGFQPEAGEVPEEEWWAL-AYRYEREFLKAYDILGV 119 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQ 173 PT++PRAT HIP+M LIQ +I GHAY A + ++ FD S YG+ +R+ ID+ Sbjct: 120 SRPTYEPRATGHIPEMHALIQQLIDRGHAYPALDDSGDVYFDVRSWSKYGALTRQNIDDM 179 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKV 230 + + KK+P DF LWK S EP W SPWG GRPGWH+ECSAM + YLG Sbjct: 180 QAAPDADPR-GKKDPRDFALWKGSKEGEPTTASWASPWGAGRPGWHLECSAMVTKYLGTE 238 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDL FPHHENE+AQS A AN W+HNG + EG KMSKS GN I+ E Sbjct: 239 FDIHGGGLDLRFPHHENEMAQSQAAGH--PFANFWMHNGMVTYEGEKMSKSIGNTISPAE 296 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE--------ILLSKWPQTST 342 +LE V+R + HYR +D+ L EA L + Sbjct: 297 MLELAS-------PRVVRYYLGQAHYRSVLDYRPTSLQEAAAAVERIDGFLAKAAARFGK 349 Query: 343 SKGIID----------PAVLSALYNDLNTVSAIQALHKLARE-----STKNHD------- 380 +G +D A A+ +DLN A+ ALH+ R + N D Sbjct: 350 EQGSVDGGSGPSSNAMEAFSEAMDDDLNVPRALAALHETVRAGNTALAEGNDDDARLALD 409 Query: 381 ----LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 + + A + GI+ + + ++ + R K ++++D IR+ L Sbjct: 410 TVRVMTDVLGLDA-VAGIDAGSGKEAAALDVLVQAQLAARAAARAQKDWAASDAIRETLA 468 Query: 437 SKGFILEDYKNPDN 450 G ++ED PD Sbjct: 469 HAGIVVED--GPDG 480 >gi|15834784|ref|NP_296543.1| cysteinyl-tRNA synthetase [Chlamydia muridarum Nigg] gi|11387147|sp|Q9PLE0|SYC_CHLMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|7190201|gb|AAF39040.1| cysteinyl-tRNA synthetase [Chlamydia muridarum Nigg] Length = 475 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 172/484 (35%), Positives = 248/484 (51%), Gaps = 65/484 (13%) Query: 7 IYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +YNTL R+ F PSN +++Y CGPTVYD+AHIGN R + D+L R+L + Sbjct: 5 LYNTLSREKERFL---PSNDPVKLYTCGPTVYDYAHIGNFRTYVFEDLLKRVLLFL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+DDK + AR++ S+ F D L L P Sbjct: 60 SVHHVMNITDVDDKTLAGARKKGCSL------EKYCQPYINAFFADLETLHILKADAYPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEK 182 AT++IPQMI IQ +I G AY ++ + F S PNYGS S ++E + +R+ ++ Sbjct: 114 ATHYIPQMIEAIQQLIDQGIAYVGQDQSVYFSISRFPNYGSLSHLNLEELRQSSRIDADE 173 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 Y K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 174 YDKDNLCDFVLWKAYDPNRDGEIFWESPFGKGRPGWHLECSIMSMALLGQSLDIHAGGVD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS R + W+H+ L ++G+KMSKS GNF T+ +LL+ + F G Sbjct: 234 NIFPHHENEIAQSESLSR-KPFVRYWLHSHHLLVDGKKMSKSLGNFFTLRDLLQ-QGFSG 291 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------PQTS 341 +R +L HYR ++FT + L A L + P+ Sbjct: 292 EE-----VRYLLLQGHYRTQLNFTQEGLQAARQSLKRLRDFISRLEDPFYPDDIIHPEVG 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLAR------------ESTKN-------HDLL 382 ++ A ++++ NDLN SA+ +L R E T + +L Sbjct: 347 SACQNFLEAFVTSITNDLNISSALASLFDFIRKINGMIDRQSIQEETSSEFSKQDAQHIL 406 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + +LG+ + +I + LV+ER K+K + AD +R ++ S+GF + Sbjct: 407 SLLRQIDQVLGVLPFSQ---ADIPEDVLLLVKEREAARKVKNWKEADRLRDEIISRGFAI 463 Query: 443 EDYK 446 ED K Sbjct: 464 EDGK 467 >gi|86742926|ref|YP_483326.1| cysteinyl-tRNA synthetase [Frankia sp. CcI3] gi|109894901|sp|Q2J545|SYC_FRASC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86569788|gb|ABD13597.1| cysteinyl-tRNA synthetase [Frankia sp. CcI3] Length = 524 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 134/352 (38%), Positives = 193/352 (54%), Gaps = 43/352 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T R++ F+ + P ++ +YVCGPTV H+G+ R + FD+L R L + Sbjct: 3 LHLYDTRRRRVRPFEPLRPGHVGVYVCGPTVQAAPHVGHIRTALPFDLLRRWL--VQSGR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TDIDDKII A ++ S+ + ++ T+ F L L PT QPR Sbjct: 61 SVTFVQNVTDIDDKIIINADRDGTSV------WELATRQTRAFDDAYRTLGILPPTIQPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+MI L+ ++ G+AY + + F + +YG+ S ++ D M V + Sbjct: 115 ATGHIPEMIALVSALVEGGYAYASGGSVWFRVGAFADYGALSHQRPD--AMQPSVEAEPG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + P EP W SPWG GRPGWH+ECSAM+ YLG VFDIHGGGLDL+FPH Sbjct: 173 KADPRDFALWKAARPGEPFWSSPWGDGRPGWHLECSAMAGKYLGPVFDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANI--------------------------WIHNGFLNLEGRKM 278 HENE AQ+ CA +N W+H G L G KM Sbjct: 233 HENERAQTVCAATARPASNAASADSPGPGGGEPGGGEPSSGEMARYWMHVGLLTTGGTKM 292 Query: 279 SKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 SKS GN + + + L+ + V+R +L HYR ++++ + L E+ Sbjct: 293 SKSLGNSVLVADALDAVR-------PQVLRYHLLSAHYRSTLEYSAEALAES 337 >gi|270284951|ref|ZP_06194345.1| cysteinyl-tRNA synthetase [Chlamydia muridarum Nigg] gi|270288977|ref|ZP_06195279.1| cysteinyl-tRNA synthetase [Chlamydia muridarum Weiss] gi|301336349|ref|ZP_07224551.1| cysteinyl-tRNA synthetase [Chlamydia muridarum MopnTet14] Length = 479 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 172/484 (35%), Positives = 248/484 (51%), Gaps = 65/484 (13%) Query: 7 IYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +YNTL R+ F PSN +++Y CGPTVYD+AHIGN R + D+L R+L + Sbjct: 9 LYNTLSREKERFL---PSNDPVKLYTCGPTVYDYAHIGNFRTYVFEDLLKRVLLFL--GY 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+DDK + AR++ S+ F D L L P Sbjct: 64 SVHHVMNITDVDDKTLAGARKKGCSL------EKYCQPYINAFFADLETLHILKADAYPH 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEK 182 AT++IPQMI IQ +I G AY ++ + F S PNYGS S ++E + +R+ ++ Sbjct: 118 ATHYIPQMIEAIQQLIDQGIAYVGQDQSVYFSISRFPNYGSLSHLNLEELRQSSRIDADE 177 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 Y K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 178 YDKDNLCDFVLWKAYDPNRDGEIFWESPFGKGRPGWHLECSIMSMALLGQSLDIHAGGVD 237 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS R + W+H+ L ++G+KMSKS GNF T+ +LL+ + F G Sbjct: 238 NIFPHHENEIAQSESLSR-KPFVRYWLHSHHLLVDGKKMSKSLGNFFTLRDLLQ-QGFSG 295 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------PQTS 341 +R +L HYR ++FT + L A L + P+ Sbjct: 296 EE-----VRYLLLQGHYRTQLNFTQEGLQAARQSLKRLRDFISRLEDPFYPDDIIHPEVG 350 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLAR------------ESTKN-------HDLL 382 ++ A ++++ NDLN SA+ +L R E T + +L Sbjct: 351 SACQNFLEAFVTSITNDLNISSALASLFDFIRKINGMIDRQSIQEETSSEFSKQDAQHIL 410 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + +LG+ + +I + LV+ER K+K + AD +R ++ S+GF + Sbjct: 411 SLLRQIDQVLGVLPFSQ---ADIPEDVLLLVKEREAARKVKNWKEADRLRDEIISRGFAI 467 Query: 443 EDYK 446 ED K Sbjct: 468 EDGK 471 >gi|300859175|ref|YP_003784158.1| cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41] gi|300686629|gb|ADK29551.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41] gi|302206865|gb|ADL11207.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231] gi|302331429|gb|ADL21623.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002] gi|308277117|gb|ADO27016.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19] Length = 465 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 245/472 (51%), Gaps = 54/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + +F + + +Y+CG T HIG+ R + FD+L R L + Sbjct: 3 LRIFDTGTRSLRDFTPLREGHASIYLCGATPQAQPHIGHVRSGVAFDILRRWLLAKGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A +EH P + +S ++F +L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILRKA-EEH-GRPWWEWVSTYE----REFTWAYDQLGVLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTRV 179 AT H+ QM+ +Q +I +G+AY+A + FD S+ +YGS S K++E + G Sbjct: 115 ATGHVTQMVDYMQRLIDNGYAYDAEGSVYFDVSAWTAATGSDYGSLSGNKVEEMEQGE-- 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + + K+ DF LWK + P EP W +PWG GRPGWH+ECSAM++ YLG FDIH GGLD Sbjct: 173 TDNHGKRGSHDFALWKAAKPGEPSWPTPWGEGRPGWHLECSAMATWYLGGEFDIHCGGLD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A + A W+HN ++ + G KMSKS GN +++ +LE + Sbjct: 233 LQFPHHENEIAQSHAAG--DGFAQYWMHNHWVTMSGEKMSKSLGNVLSVPNILEKVR--- 287 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAV 351 PV +R + HYR ++++ L EA E L+K G P Sbjct: 288 -----PVELRYYLGSAHYRSMLEYSDNALLEAAAGYRRIEAFLAK--VGPVEIGEWTPEF 340 Query: 352 LSALYNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIEVCKEHLN 402 AL +DL A+ +H L R ++T+ + A +LG++ EH Sbjct: 341 AKALDDDLAVPKALAEIHGLVRAGNTALSSGDTTEAQRIASSIRAMTSVLGVDPQSEHWA 400 Query: 403 KN----------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I + ++ R + K +++AD +R +L + G + D Sbjct: 401 TESDTSEDAMAALDILVRAELERRTAAREAKDWATADQVRDRLAAAGITVTD 452 >gi|293194132|ref|ZP_06609933.1| cysteine--tRNA ligase [Actinomyces odontolyticus F0309] gi|292819774|gb|EFF78785.1| cysteine--tRNA ligase [Actinomyces odontolyticus F0309] Length = 454 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 214/391 (54%), Gaps = 42/391 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y++ ++ + P + +Y+CG TV H+G+ R + FD L R LR E Sbjct: 2 LHLYDSKSARVQPLTPVTPGKVGIYLCGATVQGSPHVGHLRAAVSFDTLIRWLRRSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ H S + ++F + L APT++PR Sbjct: 61 -VTYVRNVTDIDDKIL------HKSAEAGWDWWAWAYRFEREFTQAYETLGVQAPTYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKM---GTRVP 180 AT HIP+ + L+Q++I GHAY + + + FD S +YGS +R+++ + + ++ Sbjct: 114 ATGHIPEQLDLVQSLIDAGHAYSDGHGNVYFDVHSQADYGSLTRQRLADMRTTEDDAQID 173 Query: 181 EKYH--KKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 E K++P DF LWK + P EP W+SPWGRGRPGWH+ECSAMS YLG FDIHG Sbjct: 174 EAVEAGKRDPRDFALWKATKPGEPATASWDSPWGRGRPGWHLECSAMSRRYLGDEFDIHG 233 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHHENE AQS A + A +W+HN ++ +G KMSKS GN ++I L E Sbjct: 234 GGIDLRFPHHENEQAQSHGAGW--EFARLWVHNAWVTTKGEKMSKSLGNVLSIGALTE-- 289 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------QTSTSK 344 +PA +R A+ H+R I++ + L A K+ + S+ Sbjct: 290 -----EYPAVAVRWALSTVHHRSSIEWGAETLPAAHAAWEKFSTFVARAIETAGEAPASE 344 Query: 345 GIIDPAVL-----SALYNDLNTVSAIQALHK 370 + PA L +A+ +DLN A+ LH+ Sbjct: 345 IALAPADLPEAFVAAMDDDLNVAGALAVLHE 375 >gi|116622355|ref|YP_824511.1| cysteinyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076] gi|122254163|sp|Q021Y7|SYC_SOLUE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116225517|gb|ABJ84226.1| cysteinyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076] Length = 466 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 165/488 (33%), Positives = 239/488 (48%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL +++ EF + +RMY CGPTVYDFAHIGN R D+L ++LR + Sbjct: 3 LRFYNTLSQQVEEFTPASDNTVRMYTCGPTVYDFAHIGNFRTFTFVDLLRKVLRANGFQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +V NITD+DDKII A +H S+ T T+ F++D L P Sbjct: 62 -LNHVMNITDVDDKIIRNAVAQHQSL------EQYTKIYTEAFLEDCKMLRLERPERIAP 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT HI M+ I+ + H Y ++ + F +S P YG S G RV ++Y Sbjct: 115 ATEHIHDMVSAIERLGDSQHTYASDGSVYFKIASFPGYGKLSHNDFSGNLAGARVDVDEY 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K + DF LWK EP W++ G GRPGWHIECS M+ YLG+ DIH GG+DL+FP Sbjct: 175 EKADARDFALWKTPKEGEPFWDTTIGPGRPGWHIECSVMAIKYLGETLDIHAGGIDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + W+H FL +EG+KMSKS GN+ T+ +L+ + + Sbjct: 235 HHENEIAQSESLTG-KLFSRFWLHAEFLMVEGQKMSKSLGNYYTLRDLV------AKGYE 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGII------ 347 IR + YR+ ++FT+ L A I + + P I+ Sbjct: 288 PESIRYLLASVPYRKSLNFTLDGLKAARIAIERLRNFKRRLETEPFAEGLSAILAERTAQ 347 Query: 348 -DPAVLSALYNDLNTVSAIQALHKLARE--------------STKNHDLLPIFNASAHIL 392 A + L DLNT A+ ++ + R+ +T + L F++ +L Sbjct: 348 ASQAFIGGLNEDLNTAEALASVFEYVRDLNSAMDSGEFRAGNTTAALEFLARFDSIFDVL 407 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 L+ I+ + R K + F+ AD IR QL ++G ILED K+ Sbjct: 408 KPTAKAGELS---DAEIDAQIAARAAAKKSRDFALADQIRDQLLAQGIILEDTKSG---- 460 Query: 453 RMTRWKQK 460 RWK+K Sbjct: 461 --VRWKRK 466 >gi|150019973|ref|YP_001305327.1| cysteinyl-tRNA synthetase [Thermosipho melanesiensis BI429] gi|187631644|sp|A6LJ41|SYC_THEM4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149792494|gb|ABR29942.1| cysteinyl-tRNA synthetase [Thermosipho melanesiensis BI429] Length = 469 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 239/472 (50%), Gaps = 52/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I I NT K + P ++MYVCGPTVY++ HIGNARP +VFD R L Y G K Sbjct: 3 IYITNTESGKKEKLVPNTPGVVKMYVCGPTVYNYIHIGNARPAVVFDAFRRFLEYR-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V+N TDIDDKII A + D + ++ KD L A PR Sbjct: 62 VVM-VQNFTDIDDKIINEANAW--GVNFKDVADTFIA----EYWKDAENLGIRAANFHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+++ +++ ++ +I +AY A+N ++ F +YG S +K+++ G RV Sbjct: 115 TTDYVKEIVEAVEKLIAKNYAYVADNGDVYFSVKEFKDYGKLSGKKLEDLVAGARVEVSE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF LWK P EP W+SPWG GRPGWHIECS MS LG FDIH GG DLIFP Sbjct: 175 LKKNPLDFALWKAVKPGEPSWDSPWGNGRPGWHIECSVMSQRLLGDSFDIHAGGEDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE+E AQS + A W+HNG + G KMSKS GN + E + K++G + Sbjct: 235 HHEDEKAQSEALTG-KPFAKYWMHNGMIITRGDKMSKSIGNVFLVREAV--KRYGKDA-- 289 Query: 304 APVIRLAMLMTHYREPIDFT-----------VQRLTEAEILLSKW-----PQTSTSKGII 347 ++L +L HYR PI+F+ ++ L K+ P+ T + Sbjct: 290 ---VKLFLLSKHYRTPIEFSHEIMFNTKKAALRILNTLNRFEEKYPYPLVPKRDTFMNDM 346 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------------LLPIFNASAHIL-- 392 + + AL +D NT I + +L+++ K D + +F + I Sbjct: 347 EARFVEALEDDFNTPRVIALIFELSKDLNKAMDEGKEEEALKRYHLITRVFGSVLGIFER 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G++V + + N+ I IE+++ R L K K ++ AD IR L G + D Sbjct: 407 GLKVVETN-NQKI---IEEILSVRQELRKEKDYNVADKIRDALLRAGVKILD 454 >gi|54022402|ref|YP_116644.1| cysteinyl-tRNA synthetase [Nocardia farcinica IFM 10152] gi|61216444|sp|Q5Z2R1|SYC_NOCFA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|54013910|dbj|BAD55280.1| putative cysteinyl-tRNA synthetase [Nocardia farcinica IFM 10152] Length = 467 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 165/492 (33%), Positives = 248/492 (50%), Gaps = 67/492 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R + EF + P +Y+CG TV HIG+ R + FDVL R L+ + + Sbjct: 3 LRLFDTESRTMREFAPLVPGRASVYLCGATVQGEPHIGHVRSGVAFDVLRRWLQAH--DY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A + P + + + F + L P+ +PR Sbjct: 61 DVWFIRNVTDIDDKILNKAAE--AGRPWWE----WAATYERAFDRAYRLLGVQPPSAEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ L++ +I GHAY + + FD S P YG+ S K+D+ G E Sbjct: 115 ATGHITQMVELMRRLIERGHAYASAGNVYFDVQSYPEYGALSGHKLDDVHQGESAGEG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W SPWG GRPGWH+ECSAM+ YLG FDIH GG+DL+FPH Sbjct: 173 KRDPRDFTLWKAAKPGEPSWPSPWGPGRPGWHLECSAMAEFYLGAEFDIHCGGMDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++ + G KMSKS GN +++ +L + A Sbjct: 233 HENEIAQSKAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSVPNMLTKVR-------A 283 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------------------EILLSKWPQTSTSKG 345 +R + HYR ++++ + L +A EI + KW Sbjct: 284 VELRFYLGSAHYRSMLEYSDKALDDAVAGYQRIEAFLHRTAERVGEIPVGKWTD------ 337 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------HILGI-EVCK 398 A A+ +DL A+ + +L E K + + A +LGI VC Sbjct: 338 ----AFAEAMDDDLAVPRALAEVFRLVTEGNKALEAGAVDTARELGGQVRAMLGILGVCP 393 Query: 399 -----EHLNKN--ISIAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILEDYKN 447 +H + A++ LV+ L + K +++AD +R +L + G + D N Sbjct: 394 FDPQWDHKQDDSVAQTALDVLVRAELDRRQQARADKDWATADAVRDRLHAAGIDVTDTPN 453 Query: 448 -PDNGQRMTRWK 458 P+ R R K Sbjct: 454 GPEWSLRTARGK 465 >gi|68535378|ref|YP_250083.1| cysteinyl-tRNA synthetase [Corynebacterium jeikeium K411] gi|109894894|sp|Q4JXJ2|SYC_CORJK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68262977|emb|CAI36465.1| cysS3 [Corynebacterium jeikeium K411] Length = 478 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 160/486 (32%), Positives = 246/486 (50%), Gaps = 67/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T R++ +F+ I + +Y+CG TV HIG+ R + FD+L L + Sbjct: 3 LRIYDTAARQLRDFEPIREGHASIYLCGATVQSIPHIGHVRSGVAFDILRNWLEAKGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPIND-AISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKI+ +A + ND + + + F +L P+ +P Sbjct: 62 -VAFVRNVTDIDDKILTKAAE-------NDRPWWEWAATHERAFNWAYDQLGVTPPSIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+PQMI +Q II +GH Y A+ + ++I NYG S +K+DE G Sbjct: 114 RATGHVPQMIEYMQRIIDNGHGYAADGNVYAQPATIDNYGFLSGQKLDEMDQGESA--GT 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF +WK + P EP W++PWGRGRPGWHIECSAM++ YLG FDIH GGLDL FP Sbjct: 172 GKRDPRDFTMWKAAKPGEPAWDTPWGRGRPGWHIECSAMATTYLGSEFDIHCGGLDLQFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ A + A W+HNG++ + G KMSKS GN ++I +L+ + Sbjct: 232 HHENEAAQATAAG--DGFARYWMHNGWVTMSGEKMSKSLGNVLSIPNVLKLVR------- 282 Query: 304 APV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAVL--- 352 PV +R + HYR ++++ L EA E L + + T + +DP L Sbjct: 283 -PVELRYYLGSAHYRSMLEYSEAALGEAAAGYRRIEKFLVRAIEYVTGETAVDPQALPVG 341 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKNHDLLPI-------------FNASAHIL 392 + +DL ++ +H + RE K D P A A +L Sbjct: 342 EMPAQFAEKMDDDLAVPQSLAVIHDVVREGNKLLDAKPTDEAKQQVKEIAGQVRAMAAVL 401 Query: 393 GIEVCKEHLNKN--------------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 G++ E ++ + + ++ ++ R K +++AD +R +L Sbjct: 402 GVDPLSEAWLESTKAAAGGSDVAMGALDVLVKAELERRAEARAAKDWATADEVRDRLAEA 461 Query: 439 GFILED 444 G + D Sbjct: 462 GIEVTD 467 >gi|326383076|ref|ZP_08204765.1| cysteinyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326198212|gb|EGD55397.1| cysteinyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] Length = 464 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 156/482 (32%), Positives = 241/482 (50%), Gaps = 62/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y++ R++ +F + P +Y+CG TV HIG+ R I FDVL R L Y + Sbjct: 3 LRLYDSATREVRDFVPLRPGTASVYLCGATVQGVPHIGHVRSGIAFDVLRRWLDYRGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + + + ++F + L L P+ +PR Sbjct: 62 -VLFVRNVTDIDDKILTKAAE--AGRPWWE----WAATHEREFTRAYDALGVLPPSAEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I QM+ +Q +I GHAY ++ + FD S+P YGS S ++++ G Sbjct: 115 ATGFITQMVEYMQRLIERGHAYSSDGNVYFDVRSLPEYGSLSGHRLEDVHQGESAGTG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W +PWG GRPGWH+ECSAM++ LG FDIH GG+DLIFPH Sbjct: 173 KRDPRDFTLWKAAKPGEPAWPTPWGDGRPGWHLECSAMATSLLGAEFDIHCGGMDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++ + G KMSKS GN + I +LE + A Sbjct: 233 HENEIAQSHGAG--DGFAQYWLHNGWVTMSGEKMSKSLGNVVAIPAMLERVR-------A 283 Query: 305 PVIRLAMLMTHYREPIDFT------------------------VQRLTEAEILLSKWPQT 340 +R + HYR ++++ V R+ E+ Sbjct: 284 VELRYYLGSAHYRSMLEYSEGALAEAAAGYRRIESFVHRVADRVGRVDVGEVNDDFAAAL 343 Query: 341 STSKGIIDPAVLSALYNDLNTV-SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 G+ PA L+A++N + +A++ A + + + A +LG + Sbjct: 344 DDDLGV--PAALAAVHNAVREGNTALE-----AGDGARALAIAAQVRAMTAVLGTDPLDP 396 Query: 400 H---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 H + + + I+ + R K +++AD +R +L G + D PD Sbjct: 397 HWTAAGADDEAHDALDVLIKAELDRRAQARAAKDWATADEVRDRLAEAGVEVTD--TPDG 454 Query: 451 GQ 452 Q Sbjct: 455 AQ 456 >gi|295394484|ref|ZP_06804707.1| cysteine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294972663|gb|EFG48515.1| cysteine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 456 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 241/466 (51%), Gaps = 72/466 (15%) Query: 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPS 89 +CG TV HIG+ R +VFD L R + Y + VT VRN+TDIDDKI+ ++ E Sbjct: 1 MCGATVQGAPHIGHMRSAVVFDQLRRWMTYRNFD--VTLVRNVTDIDDKILSKSVDEGRP 58 Query: 90 IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEAN 149 + + Q F + R+ PT++PRAT HIP+MI LI +I GHAY A Sbjct: 59 WWAHAFLY------EQVFTEAYDRIGVAPPTYEPRATGHIPEMIELIARLIEAGHAYPAQ 112 Query: 150 N---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWK---RSTPMEPG 203 + ++ FDT+S P YGS +R+ + P + K++P DF +WK + P+ Sbjct: 113 DGSGDVYFDTASWPEYGSLTRQDRGSMEDAADAPVR-GKRDPRDFAVWKGRKDADPVTAS 171 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W++PWGRGRPGWHIECSAMS+ YLG FDIHGGG DL FPHHENE+AQS A + AN Sbjct: 172 WDTPWGRGRPGWHIECSAMSTKYLGAQFDIHGGGRDLRFPHHENEMAQSNAAG--DPFAN 229 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +W+H+G ++++G KMSKS GN I ++L + + ++R + HYR ++FT Sbjct: 230 LWMHSGLVSVDGNKMSKSLGNSIFAHDLFD-------EYSPLLVRFFLTSGHYRSQLEFT 282 Query: 324 VQRLTEAEILLSK----WPQTSTSKGIIDPAVLS----------------ALYNDLNTVS 363 + + + +++ + T G PAV+S A+ +DL+T Sbjct: 283 RDNVAQQQAAVTRITNFLTRARTELGDTAPAVVSFESGYEGGHVAPEFAEAMDDDLSTPR 342 Query: 364 AIQALHKLARESTKNHDLLPIFNAS-----AHIL-GIEVCKEHLNKN------------- 404 A+ + +K + LL ++ AH L +E + L N Sbjct: 343 ALAVVFDYV---SKGYKLLEAGGSANREELAHTLVAVETMLDTLGINPTSLQWAETASGS 399 Query: 405 ------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + +L RL K K F++AD IR QL G ++ED Sbjct: 400 DSATQALDVLVSELANRRLEAKKAKDFANADAIRDQLTQAGIVIED 445 >gi|15843193|ref|NP_338230.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|13883546|gb|AAK48044.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|323717774|gb|EGB26972.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis CDC1551A] Length = 469 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 246/472 (52%), Gaps = 50/472 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRY 59 + ++++++T + +F + P ++ +Y+CG TV HIG+ R + FD+L R L R Sbjct: 4 RARLRLHDTAAGVVRDFVPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLLARG 63 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 Y V ++RN+TDI+DKI+ +A + + + F L L P Sbjct: 64 Y----DVAFIRNVTDIEDKILAKA------AAAGRPWWEWAATHERAFTAAYDALDVLPP 113 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT HI QMI +I+ +I GHAY ++ FD S P YG S KID+ G V Sbjct: 114 SAEPRATGHITQMIEMIERLIQAGHAYTGGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGV 173 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+D Sbjct: 174 AAG--KRDQRDFTLWKGEKPGEPSWPTPWGRGRPGWHLECSAMARSYLGPEFDIHCGGMD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQS A + A W+HNG++ + G KMSKS GN +++ +L+ Sbjct: 232 LVFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSMPAMLQ------ 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKW-PQTSTSKGIIDPA----- 350 R PA +R + HYR ++F+ +Q +A + L + + T G + P Sbjct: 284 RVRPAE-LRYYLGSAHYRSMLEFSETAMQDAVKAYVGLEDFLHRVRTRVGAVCPGDPTPR 342 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK-----NHD-LLPIFNASAHILGIEVCK------ 398 AL +DL+ A+ +H + E + +HD L +A ++GI C Sbjct: 343 FAEALDDDLSVPIALAEIHHVRAEGNRALDAGDHDGALRSASAIRAMMGILGCDPLDQRW 402 Query: 399 EHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E ++ + + ++ +Q R + + ++ AD IR +L+ G + D Sbjct: 403 ESRDETSAALAAVDVLVQAELQNREKAREQRNWALADEIRGRLKRAGIEVTD 454 >gi|31794757|ref|NP_857250.1| cysteinyl-tRNA synthetase [Mycobacterium bovis AF2122/97] gi|57117128|ref|YP_177992.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv] gi|121639500|ref|YP_979724.1| cysteinyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663444|ref|YP_001284967.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148824786|ref|YP_001289540.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis F11] gi|167967115|ref|ZP_02549392.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|215405629|ref|ZP_03417810.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|215429081|ref|ZP_03427000.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T92] gi|215432553|ref|ZP_03430472.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis EAS054] gi|218755364|ref|ZP_03534160.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503] gi|219559657|ref|ZP_03538733.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T17] gi|224991997|ref|YP_002646686.1| cysteinyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800621|ref|YP_003033622.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis KZN 1435] gi|254234153|ref|ZP_04927477.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis C] gi|254366143|ref|ZP_04982187.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis str. Haarlem] gi|254552689|ref|ZP_05143136.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184497|ref|ZP_05761971.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] gi|260198622|ref|ZP_05766113.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T46] gi|260202768|ref|ZP_05770259.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis K85] gi|289441010|ref|ZP_06430754.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T46] gi|289445174|ref|ZP_06434918.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis CPHL_A] gi|289555844|ref|ZP_06445054.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis KZN 605] gi|289571822|ref|ZP_06452049.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis T17] gi|289572233|ref|ZP_06452460.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis K85] gi|289747417|ref|ZP_06506795.1| cysteinyl-tRNA synthetase 1 cyss1 [Mycobacterium tuberculosis 02_1987] gi|289752295|ref|ZP_06511673.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis T92] gi|289755709|ref|ZP_06515087.1| cysteinyl-tRNA synthetase 1 cyss1 [Mycobacterium tuberculosis EAS054] gi|289763759|ref|ZP_06523137.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis GM 1503] gi|294993700|ref|ZP_06799391.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 210] gi|297636255|ref|ZP_06954035.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207] gi|297733248|ref|ZP_06962366.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506] gi|306786487|ref|ZP_07424809.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu003] gi|306790852|ref|ZP_07429174.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu004] gi|306791175|ref|ZP_07429477.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu005] gi|306795960|ref|ZP_07434262.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu006] gi|306801208|ref|ZP_07437876.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu008] gi|306805420|ref|ZP_07442088.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu007] gi|306974052|ref|ZP_07486713.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu010] gi|307081761|ref|ZP_07490931.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu011] gi|307086377|ref|ZP_07495490.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu012] gi|313660578|ref|ZP_07817458.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475] gi|61248033|sp|P0A634|SYC_MYCTU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61248034|sp|P0A635|SYC_MYCBO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166225298|sp|A1KPR6|SYC_MYCBP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166225299|sp|A5U8Q5|SYC_MYCTA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781686|sp|C1AI39|SYC_MYCBT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|31620354|emb|CAD95797.1| CYSTEINYL-TRNA SYNTHETASE 1 CYSS1 (CYSTEINE--TRNA LIGASE 1) (CYSRS 1) (CYSTEINE TRANSLASE) [Mycobacterium bovis AF2122/97] gi|41352809|emb|CAE55617.1| CYSTEINYL-TRNA SYNTHETASE 1 CYSS1 (CYSTEINE--TRNA LIGASE 1) (CYSRS 1) (CYSTEINE TRANSLASE) [Mycobacterium tuberculosis H37Rv] gi|121495148|emb|CAL73634.1| Cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603821|gb|EAY61784.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis C] gi|134151655|gb|EBA43700.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis str. Haarlem] gi|148507596|gb|ABQ75405.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148723313|gb|ABR07938.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis F11] gi|224775112|dbj|BAH27918.1| cysteinyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|253322124|gb|ACT26727.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis KZN 1435] gi|289413929|gb|EFD11169.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T46] gi|289418132|gb|EFD15333.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis CPHL_A] gi|289440476|gb|EFD22969.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis KZN 605] gi|289536664|gb|EFD41242.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis K85] gi|289545576|gb|EFD49224.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis T17] gi|289687945|gb|EFD55433.1| cysteinyl-tRNA synthetase 1 cyss1 [Mycobacterium tuberculosis 02_1987] gi|289692882|gb|EFD60311.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis T92] gi|289696296|gb|EFD63725.1| cysteinyl-tRNA synthetase 1 cyss1 [Mycobacterium tuberculosis EAS054] gi|289711265|gb|EFD75281.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis GM 1503] gi|308328975|gb|EFP17826.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu003] gi|308332797|gb|EFP21648.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu004] gi|308340288|gb|EFP29139.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu005] gi|308343627|gb|EFP32478.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu006] gi|308348094|gb|EFP36945.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu007] gi|308352017|gb|EFP40868.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu008] gi|308356654|gb|EFP45505.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu010] gi|308360609|gb|EFP49460.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu011] gi|308364197|gb|EFP53048.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu012] gi|328460352|gb|AEB05775.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis KZN 4207] Length = 469 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 247/475 (52%), Gaps = 50/475 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRY 59 + ++++++T + +F + P ++ +Y+CG TV HIG+ R + FD+L R L R Sbjct: 4 RARLRLHDTAAGVVRDFVPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLLARG 63 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 Y V ++RN+TDI+DKI+ +A + + + F L L P Sbjct: 64 Y----DVAFIRNVTDIEDKILAKA------AAAGRPWWEWAATHERAFTAAYDALDVLPP 113 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT HI QMI +I+ +I GHAY ++ FD S P YG S KID+ G V Sbjct: 114 SAEPRATGHITQMIEMIERLIQAGHAYTGGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGV 173 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+D Sbjct: 174 AAG--KRDQRDFTLWKGEKPGEPSWPTPWGRGRPGWHLECSAMARSYLGPEFDIHCGGMD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQS A + A W+HNG++ + G KMSKS GN +++ +L+ Sbjct: 232 LVFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSMPAMLQ------ 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKW-PQTSTSKGIIDPA----- 350 R PA +R + HYR ++F+ +Q +A + L + + T G + P Sbjct: 284 RVRPAE-LRYYLGSAHYRSMLEFSETAMQDAVKAYVGLEDFLHRVRTRVGAVCPGDPTPR 342 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK-----NHD-LLPIFNASAHILGIEVCK------ 398 AL +DL+ A+ +H + E + +HD L +A ++GI C Sbjct: 343 FAEALDDDLSVPIALAEIHHVRAEGNRALDAGDHDGALRSASAIRAMMGILGCDPLDQRW 402 Query: 399 EHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E ++ + + ++ +Q R + + ++ AD IR +L+ G + D + Sbjct: 403 ESRDETSAALAAVDVLVQAELQNREKAREQRNWALADEIRGRLKRAGIEVTDTAD 457 >gi|307720859|ref|YP_003891999.1| cysteinyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294] gi|306978952|gb|ADN08987.1| cysteinyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294] Length = 466 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 215/392 (54%), Gaps = 31/392 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I++++++ +F + + +YVCGPTVYD AH+G+A+ +VFD+L R+LR + Sbjct: 1 MHIFDSVQKTKRKFTPLKEGKVSLYVCGPTVYDDAHLGHAKSALVFDLLTRVLRANGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITDIDDKII++A I I IT T+ F + + PT +P+ Sbjct: 60 -VTYARNITDIDDKIIKKA------IEQKKEIKEITDFYTETFHTEMEAIGVKRPTIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+ + M+ LIQ +I GHAY+ ++ FDT+S Y S S R +E+ RV Sbjct: 113 ATHSLEAMVDLIQKLIDKGHAYQTPEGDVYFDTASDSEYLSLSHRMQNEEDKQERVVSST 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-----VFDIHGGGL 238 +KKN ADF LWK + SP+G GRPGWH+ECSAM +L DIHGGG Sbjct: 173 YKKNHADFALWKSVKDNSITFSSPFGAGRPGWHLECSAMIEKHLAYRDTPFAIDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE AQ+ C +N W+HNGF+N+EG KMSKS GN + + L Sbjct: 233 DLLFPHHENEAAQTRCGTN-HALSNYWMHNGFVNIEGEKMSKSLGNSFFLKDAL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIIDP 349 + + V+R +L THYR +F Q L ++ L K + + + Sbjct: 286 -KEYDGEVLRFYLLSTHYRSNFNFNTQDLAASKKRLDKLYRLKKRLFGLAPCSDETTFKK 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 +L AL +D+N SA+ + ++ + + D+ Sbjct: 345 ELLEALNDDMNVSSALALIDEMISGANETLDI 376 >gi|160916264|ref|ZP_02078471.1| hypothetical protein EUBDOL_02291 [Eubacterium dolichum DSM 3991] gi|158431988|gb|EDP10277.1| hypothetical protein EUBDOL_02291 [Eubacterium dolichum DSM 3991] Length = 446 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 250/478 (52%), Gaps = 73/478 (15%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YG 62 ++K++N++ + I EF+ + +RMYVCGPTVY++ HIGN RP++VFD L R L+ Y Sbjct: 2 EMKLFNSMTQSIEEFKPLHEGEVRMYVCGPTVYNYPHIGNVRPIVVFDTLKRTLQAIGYN 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V+ N TD+DDKII+ A++ S IT K + + +D L + P Sbjct: 62 VKMVS---NYTDVDDKIIKVAKEAGVS------EKEITEKFIKAYNEDRLSLHAMMPDAA 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+ T + +I I ++ G+AY + ++ F +S+ +YG S ++I++ +G R+ E Sbjct: 113 PKVTETMDAIIAFINLLVEKGNAYVVDGDVYFRVNSVDDYGKLSNQQIEDLMVGARIDEN 172 Query: 183 YHKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLD 239 K+NP DF LWKR+ E G W+SPW GRPGWH EC M + + + DIHGGG+D Sbjct: 173 SKKENPLDFTLWKRT---EEGIRWQSPWSLGRPGWHTECVVMINDVFKEPIIDIHGGGMD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A A WIHNG +N++G KMSKS GN I +++ + GG Sbjct: 230 LKFPHHENEIAQSKAAYGT-AIAKYWIHNGMVNIDGEKMSKSLGNVIWAKDMIAS--IGG 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDPAV---- 351 V+R ML THYR P++ + A LSK Q + D + Sbjct: 287 N-----VLRWLMLSTHYRSPLNINEDGIETARKELSKVMQPLKQAYVKLSLADHVIGEDH 341 Query: 352 --------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK 403 L+A+ +DLNT +A AL + + +FN + I+ K L+K Sbjct: 342 DEVLVAPFLAAMEDDLNTPNAFAALFEAVK----------VFNQTLRQREIDYAK--LSK 389 Query: 404 NISIAIEKLVQ------ERLIL--------------LKMKKFSSADYIRKQLESKGFI 441 ++IEK++ +RL+L +K K F AD R +L +G + Sbjct: 390 Q-CVSIEKMLDILGIESQRLVLSDEDKALHGKWRAAVKEKDFEQADMYRAKLIERGIL 446 >gi|330816203|ref|YP_004359908.1| cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] gi|327368596|gb|AEA59952.1| cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] Length = 457 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 209/379 (55%), Gaps = 24/379 (6%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I++YNT+ R+ + + P + +YV GPT++D AH+GN RP +VFDVL RLLR + Sbjct: 1 MNAPIQLYNTITREKSPLRTPVPGRVTLYVGGPTLHDHAHLGNVRPAVVFDVLARLLRLH 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y + V +V + D+DD+I A + +++ T++ + +D L LAP Sbjct: 61 YPD--VLHVGRLADVDDRIHAAA------LAAGESVEAFTARYRDAWREDLDALGVLAPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRA+ + ++ ++ GHAY ++F S P +G R +++ R Sbjct: 113 VEPRASEQVAGVVEQAARLLERGHAYIEAGHVLFHVPSYPGHGRLCGRPVEDMIALARGE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +++P DF+LWK + P W SPWG GRPGWH +C+++ LG+ DIHGGG DL Sbjct: 173 PAPRRRHPLDFVLWKPAEHGFPAWPSPWGAGRPGWHAQCTSILERELGREIDIHGGGQDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 I PHHENEIAQ CA+ W+HN FL + +KMSK N +T+ L E Sbjct: 233 IHPHHENEIAQLACANG-RPPNRTWLHNAFLTVNWQKMSKPLRNVVTLRALRERAS---- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGI-------IDPAVL 352 IRLA+L HYR+P+++ +QRL+ A L++ + + ++G D AVL Sbjct: 288 ---GEAIRLALLSVHYRQPLNWNLQRLSSARRTLTRGYHVLAAARGTRVDTAVEPDEAVL 344 Query: 353 SALYNDLNTVSAIQALHKL 371 +AL NDLN +A+ L+ L Sbjct: 345 AALRNDLNVPAALARLNGL 363 >gi|260578396|ref|ZP_05846310.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase)(CysRS) [Corynebacterium jeikeium ATCC 43734] gi|258603418|gb|EEW16681.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase)(CysRS) [Corynebacterium jeikeium ATCC 43734] Length = 486 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 245/485 (50%), Gaps = 65/485 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T R++ +F+ I + +Y+CG TV HIG+ R + FD+L L + Sbjct: 11 LRIYDTAARQLRDFEPIREGHASIYLCGATVQSIPHIGHVRSGVAFDILRNWLEAKGLD- 69 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + N + + + F +L P+ +PR Sbjct: 70 -VAFVRNVTDIDDKILTKAAEN------NRPWWEWAATHERAFNWAYDQLGVTPPSIEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+PQMI +Q II +GH Y A+ + ++I NYG S +K+DE G Sbjct: 123 ATGHVPQMIEYMQRIIDNGHGYAADGNVYAQPATIDNYGFLSGQKLDEMDQGESA--GTG 180 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP W++PWGRGRPGWHIECSAM++ YLG FDIH GGLDL FPH Sbjct: 181 KRDPRDFTMWKAAKPGEPAWDTPWGRGRPGWHIECSAMATTYLGSEFDIHCGGLDLQFPH 240 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ+ A + A W+HNG++ + G KMSKS GN ++I +L+ + Sbjct: 241 HENEAAQATAAG--DGFARYWMHNGWVTMSGEKMSKSLGNVLSIPNVLKLVR-------- 290 Query: 305 PV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAVL---- 352 PV +R + HYR ++++ L EA E L + + T + +DP L Sbjct: 291 PVELRYYLGSAHYRSMLEYSEAALGEAAAGYRRIEKFLMRAIEYVTGETAVDPQALPVGE 350 Query: 353 ------SALYNDLNTVSAIQALHKLARESTKNHDLLPI-------------FNASAHILG 393 + +DL ++ +H + RE K + P A A +LG Sbjct: 351 VPAQFAEKMDDDLAVPQSLAVIHDIVREGNKLLEAKPTDEVKQQVKQIAGQVRAMAAVLG 410 Query: 394 IEVCKEHLNKN--------------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 ++ E ++ + + ++ ++ R K +++AD +R +L G Sbjct: 411 VDPLSETWLESTKAAAGGSDVAMGALDVLVKAELERRAEARAAKDWATADEVRDRLAEAG 470 Query: 440 FILED 444 + D Sbjct: 471 IEVTD 475 >gi|78184269|ref|YP_376704.1| cysteinyl-tRNA synthetase [Synechococcus sp. CC9902] gi|109894955|sp|Q3AZ17|SYC_SYNS9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78168563|gb|ABB25660.1| cysteinyl-tRNA synthetase [Synechococcus sp. CC9902] Length = 499 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 173/502 (34%), Positives = 244/502 (48%), Gaps = 78/502 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL R+ F + P +Y CG TVYD H+G+AR I +DVL R L + Sbjct: 3 LRLTNTLTRRTEPFTPLRPGKASIYCCGVTVYDLCHLGHARSYINWDVLRRYL--IWSGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKI++RA E N +++ ++ +N F D L L P PR Sbjct: 61 DVRFVQNFTDIDDKILKRASDE------NSSMTAVSERNIDAFHADMDSLGILRPDSMPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP-- 180 AT + + LI + G AY A ++ F YG S R + EQ+ G RV Sbjct: 115 ATQCLDGIRALIGELEAKGAAYSAEGDVYFAVMKHAGYGKLSGRDLSEQQENAGGRVADA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + EP + SPWG GRPGWHIECSAM LG DIH GG DL Sbjct: 175 EGARKQHPFDFALWKAAKEGEPSFPSPWGAGRPGWHIECSAMVRAELGDTIDIHLGGADL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A ++ A +W+HNG +N+ G+KMSKS GNF TI LLE Sbjct: 235 VFPHHENEIAQSEAATG-QELAQVWMHNGMVNVGGQKMSKSLGNFTTIRALLE------- 286 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQR----------------LTEAEILLSKWPQTSTS 343 S +P+ +RL +L HYR+P+DFT + L E +WP T Sbjct: 287 SGVSPMTLRLFVLQAHYRKPLDFTAEALEAAATGWKGLNAALGLGERHGQSLEWPATPAL 346 Query: 344 K--GIIDPA-------------VLSALYNDLNTVSAIQALHKLAR-------------ES 375 ++ P+ + A+ +DLN+ A+ L LA+ + Sbjct: 347 APVALVAPSNHPSEPLEPLQQRFIDAMDDDLNSSGALAVLFDLAKPLRALANRLERGDRA 406 Query: 376 TKNHDLLP-------IFNASAHILGI------EVCKEHLNKNISIAIEKLVQERLILLKM 422 + D L + A +LG+ E + I+ + R+ Sbjct: 407 DRPADELAALALRWRLLRDLAAVLGLRREADSESSGPGDDSTNQDEIQAAIDARIAAKSA 466 Query: 423 KKFSSADYIRKQLESKGFILED 444 K ++ AD IR +L+++G L D Sbjct: 467 KNYAEADRIRDELKAQGIELID 488 >gi|73669162|ref|YP_305177.1| cysteinyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro] gi|109894908|sp|Q46BZ5|SYC_METBF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|6599478|gb|AAF18751.1|AF164201_1 cysteinyl-tRNA synthetase [Methanosarcina barkeri] gi|72396324|gb|AAZ70597.1| cysteinyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro] Length = 471 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 180/483 (37%), Positives = 246/483 (50%), Gaps = 55/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F+ + + +Y CGPTVY+ HIGN R ++ D + R L Y G K Sbjct: 2 LQVYNTLTRKKEVFKPLKEGEVSIYACGPTVYNMPHIGNYRTFLMADNIVRSLEYL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDK I ++ S+ T K T +F K L + PR Sbjct: 61 -VKLVMNITDIDDKTIRDSKAAGMSL------KDFTDKYTAEFFKGLDMLNIKRASAYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT +I MI L Q +I G AYE + + SS P+YG S+ D +G V ++Y Sbjct: 114 ATENIDSMIELTQKLIDKGMAYEKGGSVYYRISSFPDYGKLSKLDFDSIIIGASVDVDEY 173 Query: 184 HKKNPADFILWKRSTP--MEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K NP DF L K STP +E G +ESPWG+ RPGWHIECS M+ + G D+H GG+D Sbjct: 174 DKDNPRDFALLKTSTPEEIERGIYYESPWGKIRPGWHIECSVMAMNCFGPTLDMHLGGVD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A + A WIH L +EG KMSKS GN T+ E++ K+GG Sbjct: 234 LIFPHHENEIAQSEGATG-KPFACYWIHGEHLIVEGEKMSKSKGNVFTLPEIV--GKYGG 290 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA-EILLSKWPQTSTSKGIID 348 V+R L HYR+ +D++ RL E E L + D Sbjct: 291 E-----VVRFMFLSVHYRKKLDYSDAFAENAKNNYLRLKETLENLEFSLESAENTDYPGD 345 Query: 349 PAVL-----------SALYNDLNTVSAIQALHKLAR------ESTKNHDLL----PIFNA 387 VL AL +D N A+ +L+R ES KN +L ++ Sbjct: 346 EEVLKILPELETQFREALEDDFNIPKALTVFKELSRTANKYLESEKNRHVLEKLYSLYRQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + LG+ E K I + +LV+ER K K ++ +D IR++++S G+I++D K Sbjct: 406 FSDTLGL--FSESGKKEIPTEVMRLVEEREAARKKKDWTVSDAIREKIKSLGYIVQDTKE 463 Query: 448 PDN 450 N Sbjct: 464 GPN 466 >gi|269986687|gb|EEZ92967.1| cysteinyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 467 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 167/476 (35%), Positives = 247/476 (51%), Gaps = 58/476 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L RKI F+A++ + MY CGPTVY++ HIGN R I +D + R L+ + Sbjct: 1 MKVYNSLSRKIENFKALEQGKVTMYTCGPTVYNYVHIGNLRTFIFYDTVKRALKL--NDY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+DDK I+ A + S+ T F++D +L T + Sbjct: 59 KVKHVMNITDVDDKTIKGAIERRMSLKE------YTELYANYFLEDLNKLNVDMDTKFTK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT++I +M +I ++ G+AYEA++ + F+ S +YG S K+D +R+ + Y Sbjct: 113 ATDNIDEMQKIIVKLVKEGYAYEADDGVYFNVSKFKDYGKLSGMKVDGSY--SRIKNDDY 170 Query: 184 HKKNPADFILWK--RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N +DF LWK + E W+ +GRPGWHIECSAMS YLGK DIH G +DLI Sbjct: 171 DKENASDFALWKYWDANDGEAYWKGELKKGRPGWHIECSAMSMKYLGKTIDIHCGAVDLI 230 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + +K N W+H L + G+KMSKS NF T+ +L G+ Sbjct: 231 FPHHENEIAQSESYSK-QKFVNYWLHAEHLLVNGQKMSKSLNNFYTLKDL------EGQG 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------WPQTS 341 + RL + +HYR +DF + L + E LL+K + + Sbjct: 284 FNPLSFRLMAIDSHYRNKLDFNFENLRKYEKLLAKIDLSIKALNKVEKYEEKEDNYSRVQ 343 Query: 342 TSKGIIDPAVL--SALYNDLNTVSAIQ---ALHKLARESTKNHDLLPIFNASAHILGIEV 396 T + + L A+ NDLNT A+Q +L LA E TK I N +L + Sbjct: 344 TKQKVEKVIELFKEAVNNDLNTHEALQHFLSLLDLADEKTKKG---KIDNNEFSVLSTAI 400 Query: 397 CKEHLNKNISIAIEKLVQERLILL--------KMKKFSSADYIRKQLESKGFILED 444 K N + I I+ + E +I L + K+F AD +R+++ G+ + D Sbjct: 401 SK--ANDVLGIYIDYKIPEEIIALAEEREQKRREKQFIEADLLREKISENGYSIAD 454 >gi|218295459|ref|ZP_03496272.1| cysteinyl-tRNA synthetase [Thermus aquaticus Y51MC23] gi|218244091|gb|EED10617.1| cysteinyl-tRNA synthetase [Thermus aquaticus Y51MC23] Length = 480 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 172/487 (35%), Positives = 255/487 (52%), Gaps = 66/487 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T++RK F+ P ++ +YVCGPTVY H+G+AR IV+DVL R + G K V Sbjct: 5 IYDTMQRKKVPFEPATPGHVGIYVCGPTVYADPHLGHARGPIVYDVLRRYF-LHKGYK-V 62 Query: 67 TYVRNITDI---------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 +V NITD+ +DK+ +RA+ E P+ + K T + L L Sbjct: 63 RFVSNITDVGHLTEDDEGEDKVAKRAKLEKLE-PME-----VAEKYTWSYFDAMAALNVL 116 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 P+ PRA+ HIP+M L Q ++ G AY + F + P YG S ++ +E + G Sbjct: 117 RPSIAPRASGHIPEMWELTQKLLERGVAYVREGSVYFRVRAFPEYGKLSGKRPEELRAGA 176 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 RV + K++P DF LWKR+ EPG W+SPWG G PGWHIEC+AMS YLG+ FD+ Sbjct: 177 RVEVREEKEDPLDFALWKRA---EPGHLMRWKSPWGEGYPGWHIECTAMSLKYLGEGFDL 233 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+DL FPHHE EIAQ+ A + A W+H+ + LEG KM+KS GN + +++LL Sbjct: 234 HAGGIDLQFPHHECEIAQAEAAGY--RFARHWMHHNHVLLEGEKMAKSTGNLVLLHDLL- 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKW------------ 337 R+ +R +L THYR P+DFT L A+ LL+ + Sbjct: 291 ------RAHEPMAVRFYLLQTHYRSPMDFTFAGLEAAKKGYARLLNAYREVRARKKTAPK 344 Query: 338 ---PQTSTSKGIIDPAVLSALYNDLNTVSAIQ-------ALHKL---ARESTKNHDLLPI 384 P+ + ++ ++A+ +DL+T A+ LH+L ARE + Sbjct: 345 GTTPELERALEALEKGFMAAIEDDLSTPEALAQFFTFLPELHRLLPEAREESLRRAEEAF 404 Query: 385 FNASAHILGI---EVCKEHLNK-NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ILG+ V +E L+ + I L++ R + K ++ +D IR +L++ G Sbjct: 405 HTLGEGILGLFPERVLEEKLSGPLLEGLIGLLLELREEARRAKDYAKSDLIRDRLKALGV 464 Query: 441 ILEDYKN 447 I+ED K Sbjct: 465 IVEDTKE 471 >gi|224418544|ref|ZP_03656550.1| cysteinyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|253826903|ref|ZP_04869788.1| cysteinyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|313142072|ref|ZP_07804265.1| cysteinyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|253510309|gb|EES88968.1| cysteinyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|313131103|gb|EFR48720.1| cysteinyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] Length = 467 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 252/478 (52%), Gaps = 59/478 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++KIY++++++ +F I+P +R+YVCGPTVYD +H+G+AR IVFD+L R+LR E Sbjct: 2 QLKIYDSIKKEKVDFFPINPPKVRLYVCGPTVYDDSHLGHARSAIVFDLLRRILRENGYE 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V + +N TDIDDKII ++ Q S ++ IT TQ+++ + L +P Sbjct: 62 --VLFAKNFTDIDDKIINKSLQSGLS------VAEITQTYTQKYLDEMAALGVERADIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT + + +I+ ++ G AY+ N +I P YGS S R + E + +R+ Sbjct: 114 KATESLESICAMIEKLLEKGFAYQTPNGDIYLSVEKDPQYGSLSGR-VAELETQSRIQNS 172 Query: 183 YHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLG----KVFDIHGGG 237 K++ DF LWK + + G++SP+G+GRPGWHIECSAM +L DIHGGG Sbjct: 173 EQKRDARDFALWKSYKGIGDIGYDSPFGKGRPGWHIECSAMIKKHLAYSGEYAIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE +Q+ CAD + A WIHNGF+ + G KM+KS GN I + L Sbjct: 233 ADLLFPHHENEASQTRCADN-QTIAKYWIHNGFVTINGEKMAKSLGNSFFIKDAL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKG---I 346 +++ ++R +L THYR ++F + L A+ L + +P +G Sbjct: 287 --KNYDGEILRFYLLGTHYRAGLNFAEEDLLTAKKRLDRIYRLKKRIYPIQKIDEGECCE 344 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLAREST-----KNHDLLPIFNAS----AHILGI--- 394 A L AL +DLN A+ + + ++ K D P+ + +LGI Sbjct: 345 FREAFLEALNDDLNVSKALSVVDEFVAKANELLDKKQKDKAPMIAGNLVIIERLLGIGSK 404 Query: 395 --------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 V +E N+ IE L+ +R K K ++ AD IR++L G + D Sbjct: 405 NPFAYFQLGVSEEQKNE-----IETLIAKRNEAKKQKDYAEADKIREELRKMGIEIMD 457 >gi|27262230|gb|AAN87396.1| Cysteinyl-tRNA synthetase [Heliobacillus mobilis] Length = 454 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 228/454 (50%), Gaps = 71/454 (15%) Query: 58 RYYYGEKC-------VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 R+ YG V Y++N TDIDDKII RA E PI + ++ +++ +D Sbjct: 19 RFRYGSPLPGVYRYEVDYIQNFTDIDDKIINRA-NEVGEDPIQ-----LAARFVEEYFQD 72 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 L T P+ + H+ +I +I+ + GHAYE ++ F S +YG S R Sbjct: 73 AKALNVRPATVHPKVSTHMGDIIAMIRRLEEKGHAYEMEGDVYFSIPSFKDYGKLSGRSQ 132 Query: 171 DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 ++ + G RV K++P DF LWK+ P EP W+SPWG+GRPGWHIECSAMS YLG Sbjct: 133 EDMQAGARVEVDERKRHPMDFALWKKVKPGEPSWDSPWGKGRPGWHIECSAMSQKYLGDT 192 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGG DLIFPHHENEIAQS A W+HNGF+ + KMSKS GNF T+ + Sbjct: 193 FDIHGGGQDLIFPHHENEIAQSEACTSTAPMARYWLHNGFITVNQEKMSKSLGNFFTLRQ 252 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQT 340 +L KKF G V+R +L THYR P+DF +QRL LL + + Sbjct: 253 IL--KKFSG-----DVVRFYLLSTHYRSPLDFDDTKLEAAQKGLQRLRTGRRLLEEALKD 305 Query: 341 STSK-GIIDPAVL----------------SALYNDLNTVSAIQALHKLARES-------- 375 S + G PA A+ +D NT A+ L LARE+ Sbjct: 306 SARQSGNNRPAAQREKLADQWTKTKNDFREAMDDDFNTALALSLLFDLARETNAFLHGGE 365 Query: 376 ---TKNHDLL----PIFNASAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKF 425 ++ LL F+ + ++GIE+ + + S+ ++ L+ R K K + Sbjct: 366 GLGAEDLQLLRHVAETFDQLSGVMGIELSETAEAADDSLVDGLMDLLISLRAEARKKKDW 425 Query: 426 SSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++AD IR L+ I+ED P RWK+ Sbjct: 426 ATADKIRDGLKELAIIIED--TPQG----ARWKK 453 >gi|311897431|dbj|BAJ29839.1| putative cysteinyl-tRNA synthetase [Kitasatospora setae KM-6054] Length = 461 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/474 (34%), Positives = 245/474 (51%), Gaps = 45/474 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 I+++NTL ++ EF + P +RM+VCGPTVY +H+G+A+ FD++ R L R Y Sbjct: 3 IRLHNTLTKRKEEFVTMTPGVVRMFVCGPTVYGLSHVGHAKTYTQFDLVARYLKKRGY-- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY +N+TD+DDKII RA E P + + ++ + ++ D L Sbjct: 61 --QVTYAQNLTDVDDKIIRRA-NELGMDPRD-----LATEYEKHYLDDMAALHNTNVDVF 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS-RRKIDEQKMGTRVPE 181 RA +HI +++ +Q +I GHAY ++ +D ++ P YG S R ++ + RV E Sbjct: 113 GRAHDHIDEIVAQVQQLIERGHAYRLDDGWYYDLTTFPGYGKLSGRTEVKAEDSLARVDE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK P EP W + G GRPGWHIE +A++ G +D+HGG +DLI Sbjct: 173 NDQKRNPGDFALWKARKPGEPYWATALGEGRPGWHIEDTAITEALFGPQYDLHGGAVDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHE EIAQ A ++ A W+H G L ++G KMSKS GNF+TI ++L+T F Sbjct: 233 FPHHEAEIAQMEAASGLDPLARYWMHTGLLRVDGAKMSKSTGNFLTIRDILKTADF---- 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----------LLSKWPQTSTSKGIID--- 348 +R A L HYR ++ L +A L+ + + S + + Sbjct: 289 ---RTLRYAFLSQHYRSSMELNDTTLEQARAARRRVENFARLIDRNHEDSPASAALARNA 345 Query: 349 -PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 A+ L +DL+T A+ L RE + + P A A + ++ + + + Sbjct: 346 REAIFERLDDDLDTPGALAVLFDYIREQNRREE-PPGTAALALLRELDELFDAFDLDDRT 404 Query: 408 A----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 IE L+ R L + ++F AD IRK L +G ++ED PD TRW Sbjct: 405 TDDAEIEALLARRRELRQARRFEEADEIRKTLHQRGIVIED--TPDT----TRW 452 >gi|294055072|ref|YP_003548730.1| cysteinyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221] gi|293614405|gb|ADE54560.1| cysteinyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221] Length = 478 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 253/487 (51%), Gaps = 62/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + +R Y CGPTVY AHIGN R ++ D L R+L Sbjct: 3 VQLYDTHSRSLQTLAPEGDQPLRFYCCGPTVYGPAHIGNFRTFLIQDTLRRVLEV--DNT 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRNITD+DDK I R+++E S+ T+K T++F D L L+P+ +P Sbjct: 61 PVKHVRNITDVDDKTIRRSQEEGMSL------GSFTAKWTEKFHADCEALNMLSPSIEPS 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKI------DEQKMG- 176 A HIPQ I L++ ++ GHAY ++ + F SS NYGS S+ K +E G Sbjct: 115 AVEHIPQQIALVEKLVEKGHAYATDDGSVYFRVSSFANYGSLSKLKQRELQTQNENSAGE 174 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAM-SSHYLGKVFD 232 ++Y +++ DF LWK P E G W SPWG GRPGWH+ECSAM S + G+ + Sbjct: 175 VNDADEYDRESVTDFALWKGRKP-EDGDNYWSSPWGEGRPGWHLECSAMVDSAFDGETIE 233 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 +HGGG+DL FPHHENEIAQS CA W H+ L +EG KMSKS GN T+++L Sbjct: 234 LHGGGIDLCFPHHENEIAQSECA-HGHAFCKHWFHSAHLMVEGAKMSKSLGNLYTLDDLR 292 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE-----------AEILLSKWPQTS 341 E + + V+R ++ YR+ ++FT L AE LL+K + + Sbjct: 293 E------KGFNPMVVRYTLIAGSYRQQLNFTFDGLHASESAILKLERFAESLLAKTGEET 346 Query: 342 TSKGIID------PA-------VLSALYNDLNTVSAIQALHKL-------ARESTKNHDL 381 T+ + D PA AL N+LNT + + A+ + +++ +L Sbjct: 347 TA--LADYISKEAPADFGRFGKAWDALRNNLNTAACLGAIFGVIGSNPAATLDASGAREL 404 Query: 382 LPIFNASAHILGIEV-CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 L + + + LG+ + E + I L Q+R K K + AD +R QL ++G+ Sbjct: 405 LKAYGSLLYALGLNLFTAEEKQVDAPAEIVALAQQRWEAKKAKDWGKADELRDQLLTQGW 464 Query: 441 ILEDYKN 447 I++D K+ Sbjct: 465 IVKDSKD 471 >gi|218283691|ref|ZP_03489652.1| hypothetical protein EUBIFOR_02246 [Eubacterium biforme DSM 3989] gi|218215680|gb|EEC89218.1| hypothetical protein EUBIFOR_02246 [Eubacterium biforme DSM 3989] Length = 443 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 168/467 (35%), Positives = 240/467 (51%), Gaps = 54/467 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+ + I E + I+ I MYVCGPTVY++ HIGNARP++VFD L + L E Sbjct: 1 MKLYNSYSQTIEELKPIEEGKISMYVCGPTVYNYPHIGNARPIVVFDTLKKALSAQGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ N TD+DDKII+ A I N + IT K + L P + PR Sbjct: 60 -VTFASNYTDVDDKIIKTA------IEQNVSEKEITDKFIAAYNDVRRGLHADLPDYAPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++I I ++ +G AY+ ++ F +S YG S + ID+ +G R+ E Sbjct: 113 VTETMDRIIEFIDKMVKNGSAYQVGGDVYFRVNSDKKYGELSHQSIDDLMVGARIDENEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFP 243 K+NP DF LWK +T W+SPW +GRPGWH EC M K + DIHGGGLDL FP Sbjct: 173 KENPLDFTLWKETTE-GIKWDSPWSKGRPGWHTECVVMIQDVFKKTLIDIHGGGLDLKFP 231 Query: 244 HHENEIAQ-SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ C D ANIW+HNG +N+ G KMSKS GN +L+ GG Sbjct: 232 HHENEIAQCEVCNDT--HLANIWVHNGMININGIKMSKSLGNVWWAKDLI--ANHGGN-- 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------PQTSTSKGII 347 + R M+ THYR P++ + ++ L K Q +T+ Sbjct: 286 ---LTRWLMISTHYRAPLNLNEEAFATSKKELDKIAAAYKQACVKLVLSSAQEATTFDET 342 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAR---ESTKNHD--------LLPIFNASAHILGIEV 396 A + AL +DLNT +AI +++L + ++ + + L+ +ILGIE Sbjct: 343 YTAFIDALNDDLNTPNAISVVYELVKKINQAVRQREIDVENLAVLVHTLEKMLYILGIEF 402 Query: 397 CKEHLNKNISIAIE--KLVQERLILLKMKKFSSADYIRKQLESKGFI 441 K +S+ E ++ Q +K K F +AD +R+ L KG + Sbjct: 403 DK------VSMTNEDKEMYQNWRSAVKEKDFKTADTLRQTLIEKGIL 443 >gi|294495735|ref|YP_003542228.1| cysteinyl-tRNA synthetase [Methanohalophilus mahii DSM 5219] gi|292666734|gb|ADE36583.1| cysteinyl-tRNA synthetase [Methanohalophilus mahii DSM 5219] Length = 471 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 56/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F + + +Y CGPTVY+ HIGN R ++ D L R+L Y Sbjct: 2 LRLYNTLTRKKEVFHPLKEEEVSIYACGPTVYNIPHIGNYRTFLMTDNLVRILEYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDK I +++ S+ T K T++F L + PR Sbjct: 60 TVNLVMNITDIDDKTIRDSKKAGMSL------KEFTEKYTEEFFCGLDMLNIQRASSYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT ++ MI L Q ++ G AYE + + + ++ P YG S+ + K+G V ++Y Sbjct: 114 ATENVDGMIELAQTLMEKGLAYEKDGSVYYRIAAFPEYGKLSKLDFNSIKVGASVDVDEY 173 Query: 184 HKKNPADFILWKRST--PMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K NP DF+L K ST +E G +ESPWG+ RPGWH ECS MS ++ G DIH GG+D Sbjct: 174 DKDNPRDFVLLKASTQEEIERGIYYESPWGKIRPGWHTECSVMSMNHFGPSLDIHTGGVD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A + WIH L ++G KMSKS GN T+ EL+E K+GG Sbjct: 234 LIFPHHENEIAQSEGATG-KPFVRYWIHGEHLIVDGEKMSKSKGNVFTLPELVE--KYGG 290 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------STS 343 V+R + HYR+ +DF+ A+ K +T + Sbjct: 291 E-----VVRFMFMSVHYRKKLDFSDSFAQNAQNSYFKLRETLENLQFAIKGADDNEYPSD 345 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLAR------ESTKNHD----LLPIFNA 387 K +ID + +AL +D+N AI H+L+R ES +N D LL ++ Sbjct: 346 KEMIDLSGNLEDDFRNALEDDMNIPKAIAVYHELSRISNQYLESGRNKDVLEKLLSLYRK 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A LGI +E + + I +LV+ R K + + +AD +R+++ +GF+++D Sbjct: 406 FADTLGI-FAQE--GEEVPEEIMELVKIREQARKDRDWDTADALREKIAQEGFVVQDTCE 462 Query: 448 PDNGQRMTR 456 N +R R Sbjct: 463 GPNVKRQKR 471 >gi|87310876|ref|ZP_01093002.1| cysteinyl-tRNA synthetase [Blastopirellula marina DSM 3645] gi|87286391|gb|EAQ78299.1| cysteinyl-tRNA synthetase [Blastopirellula marina DSM 3645] Length = 507 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 174/516 (33%), Positives = 248/516 (48%), Gaps = 93/516 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL + EFQ + P + +Y+CGPTVY AHIG+ ++FD + R L Y E Sbjct: 3 IRVYNTLSKTKEEFQTVTPGKVGIYLCGPTVYAEAHIGHMVGPVIFDTVKRYLVYSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITD+DDK+I++A + S+ + ++N ++ + L P+ Sbjct: 62 -VNLVVNITDVDDKLIKKATERGISM------EEVANENIADYLHNLAALGVDQIDQMPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + +I ++ +I G AY + ++ F+ + P YG + R + E G Sbjct: 115 ATETMDGIIAMVAELIEKGFAYASEGDVYFEVTKDPEYGKLTNRTV-EAMQGEGGEAASR 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGGLDLIFPH Sbjct: 174 KRSPGDFALWKKAKAGEPSWKSPWGDGRPGWHIECSAMSKAILGETFDIHGGGLDLIFPH 233 Query: 245 HENEIAQS-CCADRIEKTANIWIHNGFLNLE------------------GRKMSKSNGNF 285 HENEIAQS CC + W+HNG L + G KMS+S G Sbjct: 234 HENEIAQSECC--HAKPMVKYWMHNGLLRSDPAAGKIGGRAEREGAAEAGGKMSRSGGAG 291 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------- 337 + +L+E ++ G R IR +L THYR I F+ + + EA I L + Sbjct: 292 -GLAKLIE-RQSGER------IRFFLLRTHYRSTILFSEEAIAEAGIGLDSFYRLFERYE 343 Query: 338 ----------PQTSTSK-GIIDP--------------AVLSALYNDLNTVSAIQALHKLA 372 P T K G +P A L + +D NT A+ L ++A Sbjct: 344 RLTGESFFDLPAAKTRKEGDFEPKKSELLVAIAKHRDAYLEKMDDDFNTGGAVSELFEMA 403 Query: 373 R-----------ESTKNHDLLPIFNASA------HILGIEVCKEHLNKN-----ISIAIE 410 R E K+ DL I A + ILGI V + + + ++ Sbjct: 404 RLINKTIDQQKLEGDKSADLTNIKKAFSVLRELTGILGIFVTAPEKSSSGDSELVGQLMQ 463 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 L+ R + K F +D IR +L + G LED K Sbjct: 464 LLIDVRASARQKKDFEMSDVIRDRLTAMGVTLEDRK 499 >gi|238061386|ref|ZP_04606095.1| cysteinyl-tRNA synthetase [Micromonospora sp. ATCC 39149] gi|237883197|gb|EEP72025.1| cysteinyl-tRNA synthetase [Micromonospora sp. ATCC 39149] Length = 471 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 243/478 (50%), Gaps = 60/478 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + +F + +Y+CG T+ HIG+ R + +DVL R L E Sbjct: 3 LRLYDTATRSVRDFVPREAGKAGVYLCGLTLQGPPHIGHLRSGVNYDVLRRWLLARGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A ++ I N + L L PT++PR Sbjct: 62 -VRFIRNLTDIDDKILVKAVEQ------GRPFWSIAYANERALAAAYGMLNVLPPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT HIP+M LI +I GHAY A + ++ FD +S P YG+ S + D + PE Sbjct: 115 ATGHIPEMHELIARLIDTGHAYPATDGSGDVYFDVASWPAYGALSGQSPDAMQAADDAPE 174 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K +P DF LWK + P EP W SPWGRGRPGWHIECSAM YLG+ FDIHGGGL Sbjct: 175 R-GKHDPRDFALWKGAKPNEPADAYWPSPWGRGRPGWHIECSAMCWRYLGEEFDIHGGGL 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A A W+H+G L + G KM KS GN + +L G Sbjct: 234 DLTFPHHENEIAQSQAAGL--PFARYWVHHGLLGIGGAKMGKSLGNAL---DLTYIDSLG 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSK------GIID 348 R P+ +R HYR +D+T L E + + Q + + G + Sbjct: 289 VR----PIELRYYYAAAHYRSHVDYTEDSLREWASGFRRIEGFVQRAAERVGPGELGELS 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARES----TKNHDL-----LPIFNASAHILGIEVCKE 399 ++A+ +DLNT +A+ L ++ R+ D+ L A ILGI+ E Sbjct: 345 AGFVAAMDDDLNTSAALAVLQEVLRDGNTALAAGDDVTVRTALGSTRAMLDILGIDPLDE 404 Query: 400 H-------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ +++A+E+ Q R K + +AD +R QL+ G ++ED Sbjct: 405 AWTGGGRADDLRGVVDSLVALALEQRAQAR----SRKDWVAADAVRDQLKLAGVVVED 458 >gi|332826849|gb|EGJ99649.1| cysteinyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286] Length = 489 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 178/514 (34%), Positives = 266/514 (51%), Gaps = 79/514 (15%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ +YNTL R F+ + ++ MYVCGPTVY AH+G+AR + FD+L+R L++ Sbjct: 1 MEQKLSVYNTLTRTKEVFEPLHAPHVGMYVCGPTVYSDAHLGHARHGVTFDLLFRYLQHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + + ++ K Sbjct: 61 -GYK-VRYVRNITDVGHLENEEGSGEDKISKKARLEQLE-PME-----VVQYYSNRYHKV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I I+ I+ +G+AYE+N + FD +YG S Sbjct: 113 MDDLNTLPPSIEPHASGHIIEQIESIKEILKNGYAYESNGSVYFDVEKYNKDYDYGILSH 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I+E TR + + K + DF LWK++ P W SPW G PGWH+ECS MS Sbjct: 173 RNIEEMLNTTRELDGQDEKHSKVDFALWKKAAPEHIMRWPSPWSDGFPGWHLECSTMSIK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLGK FDIHGGGLDL+FPHHE EIAQ+ ++ + W+HN + + G+KM++S GNF Sbjct: 233 YLGKEFDIHGGGLDLMFPHHECEIAQNTAMEK-HQVVKYWMHNNMITIAGQKMARSLGNF 291 Query: 286 ITINELLETKKFGG------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 IT+ +L F G +++ +R +L HYR +DF+ + L AE L + Sbjct: 292 ITLEQL-----FAGNHDLLEKAYSPMTVRFFILQAHYRSTVDFSNEALQAAEKSLERLLD 346 Query: 340 TSTSKGIIDPAVLS----------------ALYNDLNTV--------------SAIQALH 369 S G +D +S A+ +D+N+ SAI Sbjct: 347 ---SYGRLDKVAISDTSSVDVKSIRQKCYDAMNDDMNSAVVIAHLCEASTTINSAIAGNI 403 Query: 370 KLARES-TKNHDLLPIFNASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFS 426 KL +E T+ D+ IF S +LGI E + N+ A++ L+ R + K ++ Sbjct: 404 KLTKEDITELKDVFDIFLFS--VLGIRNEASLTNNNEAFGKAVDLLLDIRQKAKENKDWA 461 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++D IR +L GF ++D G+ WK K Sbjct: 462 TSDQIRNELAKAGFEIKD------GKDGAEWKLK 489 >gi|2181176|emb|CAA67901.1| cysteine tRNA synthetase [Azospirillum brasilense] Length = 448 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 178/475 (37%), Positives = 235/475 (49%), Gaps = 50/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ + P + MYVCGPTVYD AHIGNARP +VFD+L+RLLR Y Sbjct: 3 LDLYNTLTRRKERFEPMTPDRVGMYVCGPTVYDTAHIGNARP-VVFDLLFRLLRRLY--P 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNIT DDKII+R + A + APT +PR Sbjct: 60 AVTYVRNITASDDKIIDRRATTGADRGADQAHRGPLPRRHGPLNA--------APTIEPR 111 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI M+ LI +I + G SRR +DE G RV + Sbjct: 112 ATHHISHMVALIGLLIEPATPTPRKGTCCSPCRRWRSTGQLSRRSLDEMIAGARVEVAPY 171 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ +DF+LWK ST +PGW+SPWGRGRPGWHIECSAM+ +LG FDIHGGGLDLI P Sbjct: 172 KRDSSDFVLWKPSTDGQPGWDSPWGRGRPGWHIECSAMAKEHLGVTFDIHGGGLDLILPD 231 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN-GNFITINELLETKKFGGRSWP 303 HENEIAQS CA + NGF+ +EGR+ S F T T+ GG Sbjct: 232 HENEIAQSRCAHAGSRWPATGSTNGFVTVEGREGCPSRWATFFTGGTSCWTEFPGGGH-- 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------VLSALY 356 + + YR + E++ L +W Q +G PA VL+AL Sbjct: 290 ------PLGVRPYRS---RGLPEAEESKATLDRWYQ--ALRGDPAPAQAELPFDVLAALE 338 Query: 357 NDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNI----------- 405 +DLN+ AI LH+LA K A E +++ Sbjct: 339 DDLNSPLAISHLHELASAVNKATGEAEKAAAKGRCRSAERWAAPETRSVVPLGAEGAAAL 398 Query: 406 -SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I++ +++R K K ++ AD IRK+L G +LED G + T WK+ Sbjct: 399 SDADIQQRIEDRSAARKAKNYAEADRIRKELADLGIVLED------GPQGTTWKR 447 >gi|3122878|sp|O07045|SYC_AZOBR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 448 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 180/475 (37%), Positives = 236/475 (49%), Gaps = 50/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ + P + MYVCGPTVYD AHIGNARP +VFD+L+RLLR Y Sbjct: 3 LDLYNTLTRRKERFEPMTPDRVGMYVCGPTVYDTAHIGNARP-VVFDLLFRLLRRLY--P 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNIT DDKII+R + A + APT +PR Sbjct: 60 AVTYVRNITASDDKIIDRRATTGADRGADQAHRGPLPRRHGPLNA--------APTIEPR 111 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI M+ LI +I + G SRR +DE G RV + Sbjct: 112 ATHHISHMVALIGLLIEPATPTPRKGTCCSPCRRWRSTGQLSRRSLDEMIAGARVEVAPY 171 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ +DF+LWK ST +PGW+SPWGRGRPGWHIECSAM+ +LG FDIHGGGLDLI P Sbjct: 172 KRDSSDFVLWKPSTDGQPGWDSPWGRGRPGWHIECSAMAKEHLGVTFDIHGGGLDLILPD 231 Query: 245 HENEIAQSCCADRIEKTANIWIHN-GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQS CA E A W+H R+MSKS GN + T+ GG Sbjct: 232 HENEIAQSRCAHAGEPLARYWVHQRLRDRRGARRMSKSLGNLLHRGTSCWTEFPGGGH-- 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------VLSALY 356 + + YR + E++ L +W Q +G PA VL+AL Sbjct: 290 ------PLGVRPYRS---RGLPEAEESKATLDRWYQ--ALRGDPAPAQAELPFDVLAALE 338 Query: 357 NDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNI----------- 405 +DLN+ AI LH+LA K A E +++ Sbjct: 339 DDLNSPLAISHLHELASAVNKATGEAEKAAAKGRCRSAERWAAPETRSVVPLGAEGAAAL 398 Query: 406 -SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I++ +++R K K ++ AD IRK+L G +LED G + T WK+ Sbjct: 399 SDADIQQRIEDRSAARKAKNYAEADRIRKELADLGIVLED------GPQGTTWKR 447 >gi|118619335|ref|YP_907667.1| cysteinyl-tRNA synthetase [Mycobacterium ulcerans Agy99] gi|166225300|sp|A0PV27|SYC_MYCUA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118571445|gb|ABL06196.1| cysteinyl-tRNA synthetase 1 CysS1 [Mycobacterium ulcerans Agy99] Length = 468 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 242/474 (51%), Gaps = 48/474 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L Sbjct: 4 RAGLRLHDTAAGAVRDFVPLREGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLMARG 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQ-EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V ++RN+TDIDDKI+ +A E P + + F L L P+ Sbjct: 64 FD--VAFIRNVTDIDDKILNKAAAAERPWWEW-------AATYERAFTAAYDALDVLPPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT H+ QM+ LI+ +I GHAY ++ FD S P+YG S K+D+ G V Sbjct: 115 AEPRATGHVTQMVELIERLIERGHAYAGGGDVYFDVLSYPDYGQLSGHKVDDVHQGEGVA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+DL Sbjct: 175 TG--KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHLECSAMARTYLGAQFDIHCGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I +L+ + Sbjct: 233 IFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPTMLQRVR---- 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQTSTSK------GIIDPAV 351 PA +R + HYR ++F+ +Q A + + ++ S+ G P Sbjct: 287 --PAE-LRYYLGSAHYRSILEFSDIALQDAVNAYVGVEEFLHRVRSRVGAVVVGDWTPRF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTK-----NHDL----LPIFNASAHILGIEVCKEHLN 402 +AL +DL+ A+ +H + E + +HD A ILG + E Sbjct: 344 AAALDDDLSVPIALAEIHHIRAEGNRALDAGDHDAALQSASSIRALMGILGCDPLDERWE 403 Query: 403 KN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + ++ ++ R + + ++ AD IR +L++ G + D + Sbjct: 404 SRDETSAALAAVDVLVQAELENRQKAREERNWALADEIRNRLKNAGIEVTDTAD 457 >gi|323343623|ref|ZP_08083850.1| cysteine--tRNA ligase [Prevotella oralis ATCC 33269] gi|323095442|gb|EFZ38016.1| cysteine--tRNA ligase [Prevotella oralis ATCC 33269] Length = 496 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 178/497 (35%), Positives = 253/497 (50%), Gaps = 59/497 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ IYNTL RK F+ + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQRLVIYNTLSRKKEVFKPLHAPNVGMYVCGPTVYGAPHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYANSYHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +PRAT HI + L+ I+ +G+AYE+N I FD YG S Sbjct: 113 MDALNVLPPSIEPRATGHIIEQEELVNEILKNGYAYESNGSIYFDIEKYNRKHRYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ +R E +K N ADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVINNSRALEGVEEKHNQADFALWKKAQPEHIMRWPSPWSDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ + W+HN + + G+KM KS GNF Sbjct: 233 YLGNHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+ + + T + +++ IR +L HYR +DF+ RL + Sbjct: 292 ITLEQFFKGTHESLSQAYSPMTIRFFILSAHYRGTVDFSNEALIASAKGFDRLMTGIADI 351 Query: 335 SKWPQTSTSK-------GIIDPAVLSALYNDLNTVSAIQAL------------HKLARES 375 ++ P +S S G + A+ +DL T + I L HK + Sbjct: 352 ARVPVSSESDEAVKQFVGELRQKCYDAMNDDLQTPTVISNLFEACHVINSLLDHKARISA 411 Query: 376 TKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILL----KMKKFSSADY 430 T DL + A ILG++ K N + K+V L L + K ++++D Sbjct: 412 TDLADLADTMHLFALDILGLKSEKGINNDAREASYGKVVDMVLALRAKAKQNKDWTTSDQ 471 Query: 431 IRKQLESKGFILEDYKN 447 IR L GF ++D K+ Sbjct: 472 IRDALAEAGFEVKDTKD 488 >gi|307298183|ref|ZP_07577987.1| cysteinyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916269|gb|EFN46652.1| cysteinyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 462 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 252/471 (53%), Gaps = 44/471 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +I++ NT+ R+ F+ + + +Y CG TVY+FAHIGN R + D L R+ + + Sbjct: 2 EIRLTNTMSRRKEIFKPLKIGEVGIYTCGLTVYNFAHIGNLRAYVFADTLKRM--FLFNG 59 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V +V NITD+ +DK+ AR+E ++ I T+ F KD R Sbjct: 60 YKVRHVMNITDVGHLTGDEDEGEDKMEAGARREGKTV------WEIVDFYTKAFFKDLER 113 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L + PT RAT H+ MI +IQ I +G+ Y A + FDTS +P+YG +R ++DE+ Sbjct: 114 LRIILPTVTCRATEHVQDMIDMIQKIEANGYTYIAGGNVYFDTSKVPDYGKLARLQLDEE 173 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKV 230 K+ +RV KKNP DF+LW E W+SPWGRG PGWHIECSAM+S YLG+ Sbjct: 174 KIRSRVENDPFKKNPFDFVLWFTRYKYENHAMQWDSPWGRGFPGWHIECSAMASKYLGER 233 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITIN 289 FDIH GG+D I HH NEIAQS A E N W+H+ FL + EG KMSKS GNFIT+ Sbjct: 234 FDIHTGGIDHIPVHHTNEIAQSEAAFGHE-WVNFWLHSEFLVIGEGEKMSKSLGNFITLQ 292 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------ 337 L++ R + R +L HY++ + FT++ L A+ + K Sbjct: 293 TLID------RGYEPADYRYYLLGAHYKKQLTFTMEALDGAKSAMKKLITRIEELKELNE 346 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA-RESTKNHDLLPIFNASAHILGIEV 396 +T + +++ A+ +DLNT A+ L K+ E + + L + + +LG+ + Sbjct: 347 SETRPNDDLMNE-FHEAINDDLNTPKALAVLWKVVDSEDLRPGEKLSLIDRFDEVLGLGL 405 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E +K I + +L +R K + + AD +R+ + KG+ + D ++ Sbjct: 406 S-EVESKTIPEEVIELANQRDAARKERNWEKADELRQLISEKGYEVLDERD 455 >gi|304383413|ref|ZP_07365879.1| cysteine--tRNA ligase [Prevotella marshii DSM 16973] gi|304335581|gb|EFM01845.1| cysteine--tRNA ligase [Prevotella marshii DSM 16973] Length = 499 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 179/499 (35%), Positives = 254/499 (50%), Gaps = 63/499 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++ +YNTL RK EF + N+ MYVCGPTVY H+G+ARP I FDVL+R LR+ Sbjct: 4 MQQRLFVYNTLTRKKEEFVPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDVLFRYLRHI 63 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 64 -GYK-VRYVRNITDVGHLEHDADDGDDKITKKARLEQLE-PME-----IAQLYTNRYHDA 115 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P AT HI + L++ I+ +G+AYE++ I FD YG S Sbjct: 116 MRALNVLPPSIEPHATGHIIEQEELVKQIMSNGYAYESHGSIYFDIEKYNKDHRYGILSG 175 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ +R + +K N DF LWKR+ P W SPWG G PGWH EC+AM Sbjct: 176 RNLDDVINNSRELDGVGEKHNQVDFALWKRAHPEHIMRWPSPWGDGFPGWHCECTAMGRK 235 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ + W+HN + ++G+KM KS GNF Sbjct: 236 YLGNHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVHYWMHNNMITVDGKKMGKSLGNF 294 Query: 286 ITINE-LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 IT+ + + T +++ IR +L HYR +DF+ L +E L + Sbjct: 295 ITLEQFFIGTHPLLKQAFSPMTIRFFILSAHYRGTVDFSNDALAASEKGLERLMNGLDDL 354 Query: 345 GIIDPA-----------------VLSALYNDLNTVSAIQALHKLAR--ESTKNH------ 379 I PA AL +DL T + I L + R + +H Sbjct: 355 DRIQPAPSTDETTAQTVATLRKRCYDALNDDLQTPTVISHLFEACRIINTVLDHKGSINA 414 Query: 380 -------DLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSA 428 D + +F + +LG++ K N A K+V L L K +S++ Sbjct: 415 ADLQELKDTMHLF--AFDLLGLKSEKNANNDAREAAYGKVVDMVLDLRAKAKADKDWSTS 472 Query: 429 DYIRKQLESKGFILEDYKN 447 D IR +L GF ++D K+ Sbjct: 473 DRIRDELAKDGFEVKDTKD 491 >gi|320533525|ref|ZP_08034187.1| cysteinyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134258|gb|EFW26544.1| cysteinyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337] Length = 498 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 140/345 (40%), Positives = 201/345 (58%), Gaps = 31/345 (8%) Query: 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y++ R I P + +Y+CG TV HIG+ R I FDVL R L E Sbjct: 28 LRLYDSAARAIVPLAPTATPGLVTIYLCGATVQGSPHIGHMRSGIAFDVLRRWLERSGQE 87 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +RN+TDIDDKI+ ++ P +P + ++F L APT++P Sbjct: 88 --VRLIRNVTDIDDKILSKSAAAEPPVPW----WAWAQRFEREFDAAYRALGVAAPTYEP 141 Query: 124 RATNHIPQMIYLIQNIILHGHAY--EANNEIIFDTSSIPNYGSFSRRKI-------DEQK 174 RAT HIP+MI L+Q ++ GHAY E+ N + +D S+P+YGS + +++ DE + Sbjct: 142 RATGHIPEMIDLVQRLLDAGHAYIGESGN-VYYDVRSLPDYGSLTNQRLEDLATTEDESQ 200 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVF 231 + V + K++P DF LWK + P EP W +PWGRGRPGWH+ECSAMS YLG+ F Sbjct: 201 LDDDV--EADKRDPRDFALWKAAKPTEPADAAWGAPWGRGRPGWHLECSAMSRRYLGETF 258 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DL FPHHENE AQS A A W+HN ++ ++G KMSKS GN + + EL Sbjct: 259 DIHGGGIDLRFPHHENEQAQSHGAGW--GFARHWVHNAWVTIKGEKMSKSLGNSLVVAEL 316 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 L + + A V+RLA+ H+R ++F+ + L +A L + Sbjct: 317 L-------KRYDAAVLRLALGTVHHRSTVEFSDETLADAAALWER 354 >gi|38234535|ref|NP_940302.1| cysteinyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129] gi|61216541|sp|Q6NFC3|SYC_CORDI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|38200798|emb|CAE50502.1| Putative cysteinyl-tRNA synthetase [Corynebacterium diphtheriae] Length = 463 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 243/478 (50%), Gaps = 56/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + +F+ I P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 3 LRIFDTGTRSLRDFEPIRPGHASIYLCGATPQTQPHIGHVRSGVAFDILRRWLIAQGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + +S ++F +L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILTKAAEN--GRPWWEWVSTYE----REFTWAYNQLGVLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTRV 179 AT H+ QM+ +Q +I +G AY A + FD ++ +YGS S +++E + G Sbjct: 115 ATGHVTQMVEYMQRLIDNGFAYAAEGSVYFDVAAWTAAEGSDYGSLSGNRVEEMEQGET- 173 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K+ DF LWK + P EP W +PWG GRPGWH+ECSAM++ YLG FDIH GGLD Sbjct: 174 -EITGKRGAHDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMATWYLGGEFDIHCGGLD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A + AN W+HN ++ + G KMSKS GN +++ +L+ + Sbjct: 233 LQFPHHENEIAQSHAAG--DGFANYWMHNHWVTMSGEKMSKSLGNVLSVPNILDKVR--- 287 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAV 351 PV +R + HYR ++++ L EA E L+K G Sbjct: 288 -----PVELRYYLGSAHYRSMLEYSEGALLEAAAGYRRIEAFLTK--VADVEAGQWTTEF 340 Query: 352 LSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKE--- 399 A+ +DL A+ +H R K H++ A A +LG++ E Sbjct: 341 EEAMNDDLAVPRALAEIHTQVRHGNSALAAGDVDKAHEIAASVRAMAAVLGVDPLDEKWL 400 Query: 400 -------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 N + + ++ +Q R K +++AD +R +L + G + D PD Sbjct: 401 DSAASDSSTNAALDVLVQAELQRRTEARAAKDWATADEVRDRLHAAGITVTD--TPDG 456 >gi|256371123|ref|YP_003108947.1| cysteinyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256007707|gb|ACU53274.1| cysteinyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 446 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 232/458 (50%), Gaps = 35/458 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R++ + P + +YVCGPTVYD H+G+ R +VFD L R L Sbjct: 2 LRLYDTARRELIQLTPGTPEQVTVYVCGPTVYDDPHLGHGRLAVVFDTLRRTLERLVAP- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITDIDDKI++RA +E + P I + ++ L PT P Sbjct: 61 -VRFVSNITDIDDKIVDRAAREGVTPPA------IAERYESRWWDAIDALGVRRPTVAPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 A+ + M+ LI+ ++ GHAY N + +P+YG + ++E + G RV Sbjct: 114 ASEWLDAMVALIERLVDRGHAYMTKNGVYLSVDHVPDYGLLKHQALEELRAGARVEVDDA 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK G+ + G GRPGWH EC AMS+ LG FD+HGGG+DL+FPH Sbjct: 174 KRSPLDFALWKTVESDAYGFATSLGYGRPGWHTECVAMSTELLGSTFDLHGGGMDLVFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ+ D A W+HN F+ LEG KMSKS GN +++ + + GGR Sbjct: 234 HENERAQASLLDM--GFAQHWVHNAFVELEGEKMSKSLGNTFGLHDAIASA--GGR---- 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG--IIDPAVL----SALYND 358 V+RLA L HYR P++ T L +A L++ + + +PA L +AL +D Sbjct: 286 -VVRLAYLRAHYRSPVELTTTTLEQAAAQLARLDSQAGAGDARAAEPADLEEFDAALADD 344 Query: 359 LNT---------VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAI 409 L+T + LA ES + A LG+ V +I + Sbjct: 345 LDTPAALAVMAEAARAARSAALAGESALANRRRAALAAMLETLGLPVPP---RASIPSEV 401 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 LV ER + + F+ AD +R ++ + G+ + D N Sbjct: 402 TALVAERDHAKRDRDFARADALRAEIAALGYQVRDTPN 439 >gi|183985048|ref|YP_001853339.1| cysteinyl-tRNA synthetase 1 CysS1 [Mycobacterium marinum M] gi|229558716|sp|B2HJ21|SYC_MYCMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|183178374|gb|ACC43484.1| cysteinyl-tRNA synthetase 1 CysS1 [Mycobacterium marinum M] Length = 468 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 243/474 (51%), Gaps = 48/474 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L Sbjct: 4 RAGLRLHDTAAGAVRDFVPLREGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLMARG 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQ-EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V ++RN+TDIDDKI+ +A E P + + F L L P+ Sbjct: 64 FD--VAFIRNVTDIDDKILNKAAAAERPWWEW-------AATYERAFTAAYDALDVLPPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT H+ QM+ LI+ +I GHAY ++ FD S P+YG S K+D+ G V Sbjct: 115 AEPRATGHVTQMVELIERLIERGHAYAGGGDVYFDVLSYPDYGQLSGHKVDDVHQGEGVA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+DL Sbjct: 175 TG--KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHLECSAMARTYLGAQFDIHCGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I +L+ R Sbjct: 233 IFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPTMLQ------R 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQTSTSK-GII-----DPAV 351 PA +R + HYR ++F+ +Q A + + ++ S+ G++ P Sbjct: 285 VRPAE-LRYYLGSAHYRSMLEFSDIALQDAVNAYVGVEEFLHRVRSRAGVVVVGDWTPRF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTK-----NHDL----LPIFNASAHILGIEVCKEHLN 402 +AL +DL+ A+ +H E + +HD A ILG + E Sbjct: 344 AAALDDDLSVPIALAEIHHTRAEGNRALDAGDHDAALQSASSIRAMMGILGCDPLDERWE 403 Query: 403 KN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + ++ ++ R + + ++ AD IR +L++ G + D + Sbjct: 404 SRDETSAALAAVDVLVQAELENRQKAREERNWALADEIRNRLKNAGIEVTDTAD 457 >gi|25029072|ref|NP_739126.1| cysteinyl-tRNA synthetase [Corynebacterium efficiens YS-314] gi|259505936|ref|ZP_05748838.1| cysteine--tRNA ligase [Corynebacterium efficiens YS-314] gi|23494359|dbj|BAC19326.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166417|gb|EEW50971.1| cysteine--tRNA ligase [Corynebacterium efficiens YS-314] Length = 479 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 241/469 (51%), Gaps = 51/469 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + EF + P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 23 LRIFDTATRTLREFIPLKPGHASVYLCGATPQAQPHIGHVRSGVAFDILRRWLLAKGLD- 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A EH P + +S ++F L L P+ +PR Sbjct: 82 -VAFVRNVTDIDDKILTKA-AEH-GRPWWEWVSTYE----REFTWAYNTLGVLPPSVEPR 134 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTRV 179 AT H+ QM+ +Q +I +G AYE N + FD ++ +YGS S ++++ + G Sbjct: 135 ATGHVTQMVQYMQRLIDNGFAYEVNGSVYFDVTAWVAAEGSDYGSLSGNRVEDMEQGE-- 192 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + + K+ P DF LWK + P EP W +PWG GRPGWH+ECSAM+++YLG FDIH GGLD Sbjct: 193 TDNFGKRGPQDFALWKAAKPGEPSWPTPWGEGRPGWHLECSAMATYYLGAEFDIHCGGLD 252 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQ+ A + A W+HN ++ + G KMSKS GN +++ +LE + Sbjct: 253 LQFPHHENEIAQAHAAG--DGFARYWMHNHWVTMAGEKMSKSLGNVLSVPNMLEKVR--- 307 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAV 351 PV +R + HYR ++++ LTEA E + + + G Sbjct: 308 -----PVELRYYLGSAHYRSVLEYSEGALTEAAAGYRRIEAFVDRVGEVEV--GTWTAGF 360 Query: 352 LSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKEHLN 402 +A+ DL A+ +H RE K +L A +LG + + Sbjct: 361 EAAMDEDLAVPKALAEIHNAVREGNSALAAGEMEKARELAGAVRAMTGVLGFDPVEWGTQ 420 Query: 403 KNISIAIEKL-------VQERLILLKMKKFSSADYIRKQLESKGFILED 444 + S A E L ++ R K ++ AD +R +L + G + D Sbjct: 421 TDDSAAHEALEVLVHAELERRATARAEKDWAVADEVRDRLAAAGIEVVD 469 >gi|30316165|sp|Q8FMI8|SYC_COREF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 459 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 241/469 (51%), Gaps = 51/469 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + EF + P + +Y+CG T HIG+ R + FD+L R L + Sbjct: 3 LRIFDTATRTLREFIPLKPGHASVYLCGATPQAQPHIGHVRSGVAFDILRRWLLAKGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A EH P + +S ++F L L P+ +PR Sbjct: 62 -VAFVRNVTDIDDKILTKA-AEH-GRPWWEWVSTYE----REFTWAYNTLGVLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTRV 179 AT H+ QM+ +Q +I +G AYE N + FD ++ +YGS S ++++ + G Sbjct: 115 ATGHVTQMVQYMQRLIDNGFAYEVNGSVYFDVTAWVAAEGSDYGSLSGNRVEDMEQGE-- 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + + K+ P DF LWK + P EP W +PWG GRPGWH+ECSAM+++YLG FDIH GGLD Sbjct: 173 TDNFGKRGPQDFALWKAAKPGEPSWPTPWGEGRPGWHLECSAMATYYLGAEFDIHCGGLD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQ+ A + A W+HN ++ + G KMSKS GN +++ +LE + Sbjct: 233 LQFPHHENEIAQAHAAG--DGFARYWMHNHWVTMAGEKMSKSLGNVLSVPNMLEKVR--- 287 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAV 351 PV +R + HYR ++++ LTEA E + + + G Sbjct: 288 -----PVELRYYLGSAHYRSVLEYSEGALTEAAAGYRRIEAFVDRVGEVEV--GTWTAGF 340 Query: 352 LSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKEHLN 402 +A+ DL A+ +H RE K +L A +LG + + Sbjct: 341 EAAMDEDLAVPKALAEIHNAVREGNSALAAGEMEKARELAGAVRAMTGVLGFDPVEWGTQ 400 Query: 403 KNISIAIEKL-------VQERLILLKMKKFSSADYIRKQLESKGFILED 444 + S A E L ++ R K ++ AD +R +L + G + D Sbjct: 401 TDDSAAHEALEVLVHAELERRATARAEKDWAVADEVRDRLAAAGIEVVD 449 >gi|315605246|ref|ZP_07880292.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313063|gb|EFU61134.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 486 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 159/496 (32%), Positives = 240/496 (48%), Gaps = 66/496 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +Y++ +I + P + +Y+CG TV H+G+ R + FD L R LR Sbjct: 1 MSTMLHLYDSKSARIQPLNPVTPGKVGIYLCGATVQGSPHVGHLRAAVSFDTLIRWLRRS 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E VTYVRN+TDIDDKI+ ++ + + ++F + L APT Sbjct: 61 GYE--VTYVRNVTDIDDKILTKSAESGWDW------WAWAYRFEREFTQAYDTLGVQAPT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKM---G 176 ++PRAT HIP I L+ +I GHAY + + FD S +YGS +R+++ + + Sbjct: 113 YEPRATGHIPDQIDLVSRLIDAGHAYSDGRGNVYFDVHSQADYGSLTRQRLADMRTTEDD 172 Query: 177 TRVPEKYH--KKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ E K++P DF LWK + P EP WESPWGRGRPGWH+ECSAMS YLG F Sbjct: 173 AQIDEAVEAGKRDPRDFALWKATKPGEPDTASWESPWGRGRPGWHLECSAMSRRYLGDEF 232 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DL FPHHENE AQS A A +W+HN ++ +G KMSKS GN ++I L Sbjct: 233 DIHGGGIDLRFPHHENEQAQSHGAGW--AFARLWVHNAWVTTKGEKMSKSLGNVLSIGAL 290 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------------- 338 E PA +R A+ H+R I++ L A K+ Sbjct: 291 TEEH-------PAVAVRWALSTVHHRSAIEWGPDTLPAAHAAWEKFSSFVARAIEAVGEA 343 Query: 339 ---QTSTSKGIIDPAVLSALYNDLNTVSAIQALH---KLARESTKNHDLLPIFNASA--- 389 + + G + A ++A+ +DLN A+ LH K + D I+ Sbjct: 344 GADEIALGPGDLPEAFVAAMDDDLNVAGALAVLHEHLKAGNAALAAGDADGIYREQVLVR 403 Query: 390 ---HILGIEVCKEHL---------------NKNISIAIEKLVQERLILLKMKKFSSADYI 431 +LG++ + + + + +++ER K + AD + Sbjct: 404 SMLDVLGLDPASQQWRGQAGIDAGGAAAGEHSALDALVGAVLEERAQARAAKDWGRADEL 463 Query: 432 RKQLESKGFILEDYKN 447 R +L + G + D ++ Sbjct: 464 RDRLAAAGVSVADGRD 479 >gi|162139903|ref|YP_716650.2| cysteinyl-tRNA synthetase [Frankia alni ACN14a] Length = 513 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 140/332 (42%), Positives = 190/332 (57%), Gaps = 23/332 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T R++ F+ + P ++ +YVCGPTV H+G+ R + FD+L R L E Sbjct: 3 LHLYDTRRRRVRPFEPLRPGHVGVYVCGPTVQSPPHVGHLRTALPFDLLRRWL--VQSEH 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT V+N+TDIDDKII A ++ S+ + ++ T+ F + L PT QPR Sbjct: 61 EVTLVQNVTDIDDKIIVNADRDGTSV------WELATRQTRAFDDAYRTIGILPPTIQPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+MI LI +I GHAY + F S P YG+ S ++ D M + Sbjct: 115 ATGHIPEMIALISALIAGGHAYAGAGSVWFRVGSFPGYGALSHQRPD--SMLPSAESEPG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + P EP W SPWG GRPGWH+ECSAM+ YLG VFDIHGGGLDL+FPH Sbjct: 173 KADPRDFALWKAARPGEPFWSSPWGDGRPGWHLECSAMAGKYLGPVFDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCC------ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 HENE AQ+ C E+ A W+H G L G KMSKS GN + + + LE + Sbjct: 233 HENERAQTVCAAGGAAGAGAEEMARYWMHVGLLTTGGTKMSKSLGNSVLVADALEAVR-- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 V+R +L HYR +++T + L E+ Sbjct: 291 -----PQVLRYHLLSAHYRSTLEYTPEALGES 317 >gi|329943176|ref|ZP_08291950.1| cysteinyl-tRNA synthetase [Chlamydophila psittaci Cal10] gi|313848330|emb|CBY17333.1| putative cysteinyl-tRNA synthetase [Chlamydophila psittaci RD1] gi|328814723|gb|EGF84713.1| cysteinyl-tRNA synthetase [Chlamydophila psittaci Cal10] gi|328915014|gb|AEB55847.1| cysteinyl-tRNA synthetase [Chlamydophila psittaci 6BC] Length = 476 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 168/482 (34%), Positives = 253/482 (52%), Gaps = 56/482 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 ++ + +YNT R F PSN +R+Y CGPTVYD+AHIGN R + D+L R L + Sbjct: 8 RQNLYLYNTASRTKELFS---PSNDPVRLYTCGPTVYDYAHIGNFRTYVFEDLLKRTLLF 64 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + V +V NITD+DDK + A ++ N ++ T+ Q F +D L L Sbjct: 65 F--GYSVKHVMNITDVDDKTLAGACKK------NISLDTYTAPFIQAFFEDVATLNILPA 116 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PRAT++IPQM+ I+ ++ G AY +N + F + P+YG S+ ++ + +R Sbjct: 117 DTYPRATHYIPQMLEAIRKLLDDGIAYTGQDNSVYFSIKAFPSYGKLSQLQLQNLQCCSR 176 Query: 179 VP-EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 V ++Y K+N +DF+LWK G WESP+G+GRPGWH+ECS M+ LG DIH Sbjct: 177 VASDEYDKENLSDFVLWKAYDKKRDGHIYWESPFGKGRPGWHLECSIMAMELLGSSIDIH 236 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GG+D IFPHHENEIAQS + + W+H+ L ++G+KMSKS GNF T+ LL+ Sbjct: 237 AGGVDNIFPHHENEIAQSESLSH-QPFSRYWLHSEHLLVDGKKMSKSLGNFFTLRNLLD- 294 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-----------SKWPQTSTS 343 R + IR +L +HYR ++FT + L L S +P+++T Sbjct: 295 -----RGFSGEEIRYMLLQSHYRMQLNFTEEGLIACRQALKRLRDFISRLESPYPESATI 349 Query: 344 KGIIDPA-------VLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIF 385 ID +A+ NDLN +A+ +L ++ D +L I Sbjct: 350 SEDIDRCGQLFLQDFSNAIANDLNIATALASLFDFIHQTNSLIDKSNFTQADSNYVLDIM 409 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ L I + +LV+ER + K K + AD +R Q+ S G+++ED Sbjct: 410 KKIDTVLGVIPFTTSL--EIPSEVAQLVEEREVARKEKNWKQADVLRNQIASLGYVIEDT 467 Query: 446 KN 447 K+ Sbjct: 468 KS 469 >gi|269957728|ref|YP_003327517.1| cysteinyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269306409|gb|ACZ31959.1| cysteinyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 480 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 171/497 (34%), Positives = 252/497 (50%), Gaps = 66/497 (13%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYG 62 +++Y+T R +++F P + +YVCG TV H+G+ RP + FDVL R L R Y Sbjct: 2 SLRLYDTATRTVSDFVPRTPGQVGIYVCGATVQSSPHVGHLRPSVAFDVLRRWLTRNGY- 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT VRNITDIDDKI+ +A + A + ++F L L PT++ Sbjct: 61 --QVTLVRNITDIDDKILAKAAAAGVEWWAHAA------RYEREFTAAYDALGVLPPTYE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDE-----QKMG 176 PRAT H+ QM+ L++ ++ GHAY + FD S P YG +R+++++ Q Sbjct: 113 PRATQHVTQMVELMERLVERGHAYTTGEGNVWFDVRSWPAYGELTRQRLEDLAPEPQSSD 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + K+N DF LWK P EP W +PWG GRPGWH+ECSAM+ YLG FDI Sbjct: 173 DVAYPGHAKRNVHDFALWKAPKPGEPATAAWPTPWGPGRPGWHLECSAMAQRYLGDEFDI 232 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHENE AQS A A W+H ++ G KMSKS GN + ++ELL+ Sbjct: 233 HGGGLDLRFPHHENEQAQSRAAGF--GFARRWLHAAWITQSGVKMSKSLGNGLLVSELLK 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL---LSKWPQTSTSK-GIIDP 349 T PAPV+R A++ YR +++ L EA L + + +T + G +D Sbjct: 291 TT-------PAPVVRYAIVAVQYRSMLEWAPDTLAEATTTWDRLCGFVERATERVGAVDA 343 Query: 350 ----------AVLSALYNDLNTVSAIQALHK------LARESTKNHDL-----LPIFNAS 388 ++AL +DLN +A+ +H+ A ++ +D L Sbjct: 344 DEIAKAELPVGFVAALDDDLNVPAALAVVHEHLRAGNTALAASAGNDAAVRAELVAVRGM 403 Query: 389 AHILGIEVCKEHLNKNISI------AIEKLVQ----ERLILLKMKKFSSADYIRKQLESK 438 +LG++ + + A++ LVQ R K ++++D IR +L Sbjct: 404 LDVLGLDPADPQWARTDAASSSTRHALDALVQAELEARAAARAAKDWAASDAIRDRLAGA 463 Query: 439 GFILEDYKNPDNGQRMT 455 G +++D PD G R T Sbjct: 464 GILVQD--GPD-GARWT 477 >gi|315446220|ref|YP_004079099.1| cysteinyl-tRNA synthetase [Mycobacterium sp. Spyr1] gi|315264523|gb|ADU01265.1| cysteinyl-tRNA synthetase [Mycobacterium sp. Spyr1] Length = 475 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 233/474 (49%), Gaps = 50/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL + +F + P ++ +Y+CG TV HIG+ R + FDVL R L + Sbjct: 9 MRLYDTLSGGVRDFAPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDVLRRWLTAKGFD- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A P + + + F L L P+ +PR Sbjct: 68 -VAFIRNVTDIDDKILIKAAD--AGRPWWE----WAATYERAFTAAYDALGVLPPSAEPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT HI QM+ LI +I GHAY E N ++ F S++P+YG S +ID+ G V Sbjct: 121 ATGHITQMVELIDRLIERGHAYCADQEGNGDVYFSVSTLPDYGKLSGHRIDDVHQGEGVA 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH EC AM YLG FDIH GG+DL Sbjct: 181 TG--KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMCEAYLGAEFDIHAGGMDL 238 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQ+ A + A W+HNG++ + G KMSKS GN + I +L+ + Sbjct: 239 VFPHHENEIAQAEAAG--DGFARFWLHNGWVTMGGEKMSKSLGNVLAIPAVLQRVR---- 292 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAV 351 A +R + HYR ++F+ L +A S + G P Sbjct: 293 ---AAELRYYLGSAHYRSMLEFSENALQDAARAYSGVEDFLHRVRVRVGAVVPGEWTPKF 349 Query: 352 LSALYNDLNTVSAIQALHKLARESTK-----NHDLLPI----FNASAHILGIEVCKEHLN 402 +AL +DL +A+ +H E + +HD A ILG + E Sbjct: 350 GAALDDDLAVPAALAEVHAARAEGNRALDAGDHDAALTHAMSIRAMMGILGADPLDERWE 409 Query: 403 KN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + V+ R + ++ AD IR +L+ G + D + Sbjct: 410 SRDETSAALAAVDVLVHAEVRRREDARARRDWAEADAIRDRLKEAGIEVTDTGD 463 >gi|145222038|ref|YP_001132716.1| cysteinyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] gi|187631640|sp|A4T5K9|SYC_MYCGI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145214524|gb|ABP43928.1| cysteinyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] Length = 467 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 232/471 (49%), Gaps = 50/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL + +F + P ++ +Y+CG TV HIG+ R + FDVL R L + Sbjct: 1 MRLYDTLSGGVRDFAPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDVLRRWLTAKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A P + + + F L L P+ +PR Sbjct: 60 -VAFIRNVTDIDDKILIKAAD--AGRPWWE----WAATYERAFTAAYDALGVLPPSAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT HI QM+ LI +I GHAY E N ++ F S++P YG S +ID+ G V Sbjct: 113 ATGHITQMVELIDRLIERGHAYCADQEGNGDVYFSVSTLPEYGKLSGHRIDDVHQGEGVA 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH EC AM YLG FDIH GG+DL Sbjct: 173 TG--KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMCEAYLGAEFDIHAGGMDL 230 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQ+ A + A W+HNG++ + G KMSKS GN + I +L+ + Sbjct: 231 VFPHHENEIAQAEAAG--DGFARFWLHNGWVTMGGEKMSKSLGNVLAIPAVLQRVR---- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAV 351 A +R + HYR ++F+ L +A S + G P Sbjct: 285 ---AAELRYYLGSAHYRSMLEFSENALQDAARAYSGVEDFLHRVRVRVGAVVPGEWTPKF 341 Query: 352 LSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIF----NASAHILGIEVCKEHLN 402 +AL +DL +A+ +H E + +HD + A ILG + E Sbjct: 342 GAALDDDLAVPAALAEVHAARAEGNRALDAGDHDAALTYAMSIRAMMGILGADPLDERWE 401 Query: 403 KN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + V+ R + ++ AD IR +L+ G + D Sbjct: 402 SRDKTSAALAAVDVLVHAEVRRREDARARRDWAEADAIRDRLKEAGIEVTD 452 >gi|332300111|ref|YP_004442032.1| cysteinyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707] gi|332177174|gb|AEE12864.1| cysteinyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707] Length = 492 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 258/493 (52%), Gaps = 59/493 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ IYNTLER F+ I P ++ +YVCGPTVY H+G+AR I FD+L+R L++ G Sbjct: 3 QLYIYNTLERAKVPFEPIAPPHVGLYVCGPTVYGDPHLGHARSAITFDILFRYLKHL-GY 61 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRN+TD+ +DKI ++A+ E P+ A +T + D+ R Sbjct: 62 K-VRYVRNVTDVGHLEHDADDGEDKIAKKAKLEQLE-PMEVAYYYLTRYH------DSLR 113 Query: 114 LA-CLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 L L P+ +P A+ HI + I L+Q I+ G+AY + + FD + YG S R Sbjct: 114 LLNVLPPSIEPLASGHIIEQIALVQQILDAGYAYVSQGSVYFDVLKYHADHPYGILSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K NP DF LWK++ P W SPW G PGWH EC+AM YL Sbjct: 174 VEDMISNTRELDGQDEKHNPLDFALWKKAQPNHIMRWPSPWSEGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGGLDL FPHHE EIAQ+ A + E W+HN + ++G+KM+KS GNFIT Sbjct: 234 GAHFDIHGGGLDLTFPHHECEIAQA-VASQGEPMVKYWMHNNMITVDGKKMAKSAGNFIT 292 Query: 288 INELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEI-LLS 335 + E AP+ IR +L HYR +DF+ QRL +A+ L S Sbjct: 293 LEEFFTGDHPALEQAYAPMTIRFFVLSAHYRGTVDFSNSALQAAEKGYQRLMDADAKLQS 352 Query: 336 KWPQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHD------------L 381 P +++ ID A A+ +D+NT I AL AR HD L Sbjct: 353 LKPSATSTIEKIDLAERCKEAMDDDINTPMVIAALFDAARLINSIHDGHEQITSEQLEEL 412 Query: 382 LPIFNASAH-ILGIEVCKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 ++ H ILG++ E + + + A++ L++ R K + ++D IR + Sbjct: 413 RRAYDLYLHDILGMQSATETADLSGSQQEAFAGAMDLLLEIRAKAKASKDWETSDLIRDK 472 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 473 LTALGFEIQDTKS 485 >gi|154490024|ref|ZP_02030285.1| hypothetical protein PARMER_00253 [Parabacteroides merdae ATCC 43184] gi|154089466|gb|EDN88510.1| hypothetical protein PARMER_00253 [Parabacteroides merdae ATCC 43184] Length = 492 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 179/493 (36%), Positives = 255/493 (51%), Gaps = 55/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ I IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPISIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHHA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD NYG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESEGSVYFDVEKYNKDHNYGVLSG 172 Query: 168 RKIDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R ID+ TR + + K+NP DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIDDMLNTTRALDGQDEKRNPIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + E + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGEDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---- 340 IT+ E K +++ IR +L HYR +DF+ + L AE L + Sbjct: 292 ITLEEFFTGDNKVLSQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLMDAYNHL 351 Query: 341 ----STSKGIIDPAVL-----SALYNDLNTVSAIQALHKLAR--ESTKN----------H 379 ++ +D L A+ +DLN+ I L AR S K+ Sbjct: 352 MKLKASDVSTVDVKDLRRKCYDAMNDDLNSPIVIAHLFDAARAINSVKDGKATISAEDLK 411 Query: 380 DLLPIFNASA-HILGI--EVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQ 434 +L +F+ ILGI E N N + A++ L+ R K ++++D IR + Sbjct: 412 ELQDVFHTFVFDILGIKDEAASGGSNNNEAFGKAMDLLLTIRQQAKANKDWATSDKIRNE 471 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 LTAIGFDIKDTKD 484 >gi|313885925|ref|ZP_07819664.1| cysteine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924614|gb|EFR35384.1| cysteine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 492 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 178/493 (36%), Positives = 258/493 (52%), Gaps = 59/493 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ IYNTLER F+ I P ++ +YVCGPTVY H+G+AR I FD+L+R L++ G Sbjct: 3 QLYIYNTLERAKVPFEPIAPPHVGLYVCGPTVYGDPHLGHARSAITFDILFRYLKHL-GY 61 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRN+TD+ +DKI ++A+ E P+ A +T + D+ R Sbjct: 62 K-VRYVRNVTDVGHLEHDADDGEDKIAKKAKLEQLE-PMEVAYYYLTRYH------DSLR 113 Query: 114 LA-CLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 L L P+ +P A+ HI + I L+Q I+ G+AY + + FD + YG S R Sbjct: 114 LLNVLPPSIEPLASGHIIEQIALVQQILDAGYAYVSQGSVYFDVLKYHADHPYGILSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K NP DF LWK++ P W SPW G PGWH EC+AM YL Sbjct: 174 VEDMISNTRELDGQDEKHNPLDFALWKKAQPNHIMRWPSPWSEGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGGLDL FPHHE EIAQ+ A + E W+HN + ++G+KM+KS GNFIT Sbjct: 234 GTHFDIHGGGLDLTFPHHECEIAQA-VASQGEPMVKYWMHNNMITVDGKKMAKSAGNFIT 292 Query: 288 INELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEI-LLS 335 + E AP+ IR +L HYR +DF+ QRL +A+ L S Sbjct: 293 LEEFFTGDHPALEQAYAPMTIRFFVLSAHYRGTVDFSNSALQAAEKGYQRLMDADAKLQS 352 Query: 336 KWPQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHD------------L 381 P +++ ID A A+ +D+NT I AL AR HD L Sbjct: 353 LKPSATSTIEKIDLAERCKEAMDDDINTPMVIAALFDAARLINSIHDGYEQITSEQLEEL 412 Query: 382 LPIFNASAH-ILGIEVCKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 ++ H ILG++ E + + + A++ L++ R K + ++D IR + Sbjct: 413 RRAYDLYLHDILGMQSATETADLSGSQQEAFAGAMDLLLEIRAKAKASKDWETSDLIRDK 472 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 473 LTALGFEIQDTKS 485 >gi|308232507|ref|ZP_07416271.2| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu001] gi|308369166|ref|ZP_07416800.2| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu002] gi|308378377|ref|ZP_07482373.2| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu009] gi|308213806|gb|EFO73205.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu001] gi|308328560|gb|EFP17411.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu002] gi|308352804|gb|EFP41655.1| cysteinyl-tRNA synthetase 1 cysS1 [Mycobacterium tuberculosis SUMu009] Length = 463 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 244/472 (51%), Gaps = 50/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRYYYG 62 +++++T + +F + P ++ +Y+CG TV HIG+ R + FD+L R L R Y Sbjct: 1 MRLHDTAAGVVRDFVPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLLARGY-- 58 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V ++RN+TDI+DKI+ +A + + + F L L P+ + Sbjct: 59 --DVAFIRNVTDIEDKILAKA------AAAGRPWWEWAATHERAFTAAYDALDVLPPSAE 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI QMI +I+ +I GHAY ++ FD S P YG S KID+ G V Sbjct: 111 PRATGHITQMIEMIERLIQAGHAYTGGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGVAAG 170 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+DL+F Sbjct: 171 --KRDQRDFTLWKGEKPGEPSWPTPWGRGRPGWHLECSAMARSYLGPEFDIHCGGMDLVF 228 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG++ + G KMSKS GN +++ +L+ R Sbjct: 229 PHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSMPAMLQ------RVR 280 Query: 303 PAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQTSTSK------GIIDPAVLS 353 PA +R + HYR ++F+ +Q +A + L + ++ G P Sbjct: 281 PAE-LRYYLGSAHYRSMLEFSETAMQDAVKAYVGLEDFLHRVRTRVGAVCPGDPTPRFAE 339 Query: 354 ALYNDLNTVSAIQALHKLARESTK-----NHD-LLPIFNASAHILGIEVCK------EHL 401 AL +DL+ A+ +H + E + +HD L +A ++GI C E Sbjct: 340 ALDDDLSVPIALAEIHHVRAEGNRALDAGDHDGALRSASAIRAMMGILGCDPLDQRWESR 399 Query: 402 NKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ + + ++ +Q R + + ++ AD IR +L+ G + D + Sbjct: 400 DETSAALAAVDVLVQAELQNREKAREQRNWALADEIRGRLKRAGIEVTDTAD 451 >gi|62185411|ref|YP_220196.1| cysteinyl-tRNA synthetase [Chlamydophila abortus S26/3] gi|81312439|sp|Q5L546|SYC_CHLAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|62148478|emb|CAH64248.1| putative cysteinyl-tRNA synthetase [Chlamydophila abortus S26/3] Length = 476 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 168/482 (34%), Positives = 253/482 (52%), Gaps = 56/482 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 ++ + +YNT R F PSN +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 8 RQNLYLYNTASRTKELFS---PSNDPVKLYTCGPTVYDYAHIGNFRTYIFEDLLKRILLF 64 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + V +V NITD+DDK + A + N ++ T+ Q F KD L L Sbjct: 65 F--GYSVKHVMNITDVDDKTLAGACKN------NISLDTYTAPFIQAFFKDVATLHILPA 116 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PRAT++IPQM+ I+ ++ G AY ++ + F P+YG S+ ++ + +R Sbjct: 117 DAYPRATHYIPQMLVAIRKLLDDGIAYIGQDHSVYFSIKEFPSYGKLSQLQLQNLQCCSR 176 Query: 179 VP-EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + ++Y K+N +DF+LWK G WESP+G+GRPGWH+ECS M+ LG DIH Sbjct: 177 IASDEYDKENLSDFVLWKAYDKHRDGHIYWESPFGKGRPGWHLECSIMAMELLGPSIDIH 236 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GG+D IFPHHENEIAQS + + W+H+ L ++G+KMSKS GNF T+ LL+ Sbjct: 237 AGGVDNIFPHHENEIAQSESLSH-QPFSRYWLHSEHLLVDGKKMSKSLGNFFTLRNLLD- 294 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-----------SKWPQTSTS 343 R + IR +L +HYR ++FT + L L S +P+++T Sbjct: 295 -----RGFSGAEIRYMLLQSHYRMQLNFTEEGLMACRQALKRLRDFISRLESPYPESATI 349 Query: 344 KGIIDPA-------VLSALYNDLNTVSAIQALHKLARES-----------TKNHDLLPIF 385 ID +A+ NDLN +A+ +L ++ +H +L I Sbjct: 350 SEGIDQCGQRFLQDFSNAIANDLNIAAALASLFDFIHQTNSRIDQSHFTQADSHYVLDIL 409 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ L I + +LV+ER I K K + AD +R Q+ S G+++ED Sbjct: 410 KKINTVLGVIPFSTSL--EIPSEVARLVEEREIARKEKNWKQADVLRNQIASFGYVVEDT 467 Query: 446 KN 447 K+ Sbjct: 468 KS 469 >gi|300934657|ref|ZP_07149913.1| cysteinyl-tRNA synthetase [Corynebacterium resistens DSM 45100] Length = 482 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 39/392 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T R++ +F+ + + +Y+CG TV HIG+ R + FD+L L+ + Sbjct: 6 LRIYDTATRQLRDFEPVREGHASIYLCGATVQSIPHIGHVRSGVAFDILRNWLQAKGLD- 64 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + + + + F +L P+ +PR Sbjct: 65 -VAFVRNVTDIDDKILTKAAEN--GRPWWE----WAATHERAFSWAYDQLGVAPPSIEPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIPQMI +Q II +GH Y A+ + ++I NYG S +K+DE G Sbjct: 118 ATGHIPQMIEYMQRIIDNGHGYAADGNVYAQPATIQNYGFLSGQKLDEMDQGESAGTG-- 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP W++PWGRGRPGWHIECSAM++ YLG FDIH GGLDL FPH Sbjct: 176 KRDPRDFTMWKAAKPGEPAWDTPWGRGRPGWHIECSAMATTYLGGEFDIHCGGLDLQFPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQ+ A ++ A W+HNG++ + G KMSKS GN ++I +L+ + Sbjct: 236 HENEAAQATAAG--DRFARYWMHNGWVTMSGEKMSKSLGNVLSIPNVLKLVR-------- 285 Query: 305 PV-IRLAMLMTHYREPIDFTVQRLTEA--------EILLSKWPQTSTSK----------G 345 PV +R + HYR ++++ L EA + LL S S G Sbjct: 286 PVELRYYLGSGHYRSMLEYSETALGEAAAGYRRIEKFLLRTAASLSDSDATSLPEIIPTG 345 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTK 377 + A + + +DL A+ +H+ RE K Sbjct: 346 EVTDAFAAKMDDDLAVPQALALIHERVREGNK 377 >gi|289642333|ref|ZP_06474481.1| cysteinyl-tRNA synthetase [Frankia symbiont of Datisca glomerata] gi|289507865|gb|EFD28816.1| cysteinyl-tRNA synthetase [Frankia symbiont of Datisca glomerata] Length = 528 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/334 (41%), Positives = 190/334 (56%), Gaps = 25/334 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY+T R++ F+ + P ++ +YVCGPTV H+G+ R + FD+L R L E Sbjct: 3 LHIYDTRTRRLRPFEPLRPGHVSVYVCGPTVQSPPHVGHIRTAVAFDLLRRWLVASGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TDIDDKII A + +++ + ++ T+ F + L PT QPR Sbjct: 62 -VTFVQNVTDIDDKIIINASRA------GESVWELATRQTRAFDDAYRAVGVLPPTIQPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+M+ LI ++ G+AY + F S YG S ++ + + E Sbjct: 115 ATGHIPEMLALIGRLVDTGYAYPGGGSVWFRVSRFAGYGGLSHQRPEAVQASPECDEG-- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + P EP WESPWGRGRPGWHIECSAM+ YLG+VFDIHGGGLDL+FPH Sbjct: 173 KVDPRDFALWKGAKPGEPFWESPWGRGRPGWHIECSAMAGKYLGEVFDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCCADRIE--------KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 HENE AQS A + A W+H G L G KMSKS GN +++ E + Sbjct: 233 HENERAQSASAAHSHGGAGGGAPQMARYWMHVGLLTTGGTKMSKSLGNSFLVSDAFEQVR 292 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 V+R +L HYR +++T + L E+ Sbjct: 293 -------PQVLRYHLLSAHYRSSLEYTPEGLAES 319 >gi|296270626|ref|YP_003653258.1| cysteinyl-tRNA synthetase [Thermobispora bispora DSM 43833] gi|296093413|gb|ADG89365.1| cysteinyl-tRNA synthetase [Thermobispora bispora DSM 43833] Length = 451 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 155/430 (36%), Positives = 229/430 (53%), Gaps = 38/430 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + EF P + +Y+CGPTV H G R I FD+L R L++ + Sbjct: 3 LRLYDTFHRAVREFSPRIPGRVSIYLCGPTVVTPPHAGQMRSQIDFDILQRWLKFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V RN+TD++DKII R SI IT + F + L CL P+ +PR Sbjct: 62 -VLLCRNVTDVEDKIIGR------SISEGTPWWRITDSVYRMFDRAFADLGCLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+MI +I+ ++ GHAYE + ++ F +S P YG+ S ++++ ++ R P + Sbjct: 115 ATGHIPEMIEMIEELLARGHAYEHDGDVYFSVASYPRYGALSGQRMERLRVTER-PAR-G 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWKR EP W+SPWG+GRPGWH+ECSAM+ YLG FDIHGGG +LIFPH Sbjct: 173 KRDPRDFTLWKRVDLGEPVWDSPWGKGRPGWHLECSAMARRYLGPAFDIHGGGSNLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS ++ A W+HNG + G K+ K G+ + LL GR P Sbjct: 233 HENELAQSRALG--DEFARFWVHNGQVTYGGEKIRKRLGDPFAVPALL------GRVRPV 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-----SALYNDL 359 +R + HYR ++F++ L EA + + G VL A+ +DL Sbjct: 285 E-LRYYLAAAHYRSRLEFSLAALEEAAAAYRRIERFVLRVGADRSPVLPHRFAEAMDDDL 343 Query: 360 NTVSAIQALHKLARES-----TKNH----DLLPIFNASAHILGIEVCKEHLN-----KNI 405 N A+ +H E T++H + A +LG++ EH + I Sbjct: 344 NVPRALSLVHAAVAEGNAALVTRDHVAAARICGSVRAMLDVLGLDPLSEHWAGGEPLEEI 403 Query: 406 SIAIEKLVQE 415 + A+ +LV+E Sbjct: 404 AAAVLRLVRE 413 >gi|323342428|ref|ZP_08082660.1| cysteine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463540|gb|EFY08734.1| cysteine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 445 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 245/465 (52%), Gaps = 48/465 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+ + EF+ I+ + MYVCGPTVY++AHIGNARP++VFD+L R+L + Sbjct: 1 MKLYNSKSNSLEEFKPIEEGKVSMYVCGPTVYNYAHIGNARPIVVFDLLRRVLETLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TD+DDKII++A +E S+I+++ + + K L P+ Sbjct: 60 -VKLVSNYTDVDDKIIKKASEEGVDE------SVISNRYIEAYEKVRKGLHADHVQATPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 TN +P++I IQ++I H +AY + ++ F S YG+ S + IDE +G R+ E + Sbjct: 113 VTNTMPEIISFIQDLIDHDYAYASKGDVYFRVSKAEEYGAISSQNIDELMVGARIEENSN 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK + W++PWG+GRPGWH EC M ++ + ++ DIHGGG DL FP Sbjct: 173 KENPLDFVLWKDTNDNGIKWDAPWGKGRPGWHTECVVMINNEFKQEIIDIHGGGQDLKFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ C A AN W+HN LN++G KMSKS GN + E ++ K G + Sbjct: 233 HHENESAQ-CRALHNHDLANYWVHNAMLNIDGEKMSKSIGNVMWAQEFID--KLGENA-- 287 Query: 304 APVIRLAMLMTHYR--------------EPIDFTVQRLTEAEILLSKWP-QTSTSKGIID 348 R ++ THYR + +D Q L +A I L K Q T+ + Sbjct: 288 ---TRWLLMSTHYRLTLNITEELVEQTHKELDRIFQGLNKAYIELEKLEFQIDTNYDELR 344 Query: 349 -PAVLSALYNDLNTVSA-------IQALHKLARESTKNHDLLPIFNASAH----ILGIEV 396 + A+ +DLN +A ++ L+ R+ N + + + +LGI Sbjct: 345 FNQFMDAMSDDLNVANANVVLFDTVKQLNAAVRQREINASDVSKYIVTVEKMLDVLGISY 404 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + L++ + ++ + + K F AD R +L +G + Sbjct: 405 TRIVLDEAARLLFKQWNEAK----ARKDFDDADRYRGELIERGLL 445 >gi|332186293|ref|ZP_08388038.1| cysteinyl-tRNA synthetase [Sphingomonas sp. S17] gi|332013661|gb|EGI55721.1| cysteinyl-tRNA synthetase [Sphingomonas sp. S17] Length = 485 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 59/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R + FQ IDP+N+R+Y CGPTVY++AHIGN R + D L R+LR+ Sbjct: 12 LTLYNSLTRALETFQPIDPANVRVYSCGPTVYNYAHIGNLRAYVFTDTLSRVLRWKGWP- 70 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 +T++ NITD+ DDK+ A++ I I + T F ++ L Sbjct: 71 -LTHIINITDVGHLTSDADAGDDKMEAAAKKS------GQDIWSIAAHYTTAFKQNLKDL 123 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 APT P AT H+PQMI + I H Y + + FD +++P+YG +R + DE + Sbjct: 124 GIAAPTRFPLATEHVPQMIEFAKAIEAK-HCYRLPDGLYFDVTTVPDYGRLARHQDDEGE 182 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 +R+ K++PADF +W+ S P E W+SPWG G PGWH+ECS MS YLG+ F Sbjct: 183 --SRIDPVAGKRHPADFAIWRSSAPGENRQMEWDSPWGPGAPGWHLECSVMSKQYLGEQF 240 Query: 232 DIHGGGLDLIFPHHENEIAQS----CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 DIH GG+D HH NEIAQ+ C A+ ANIW+HN FL KMSKS+G F+T Sbjct: 241 DIHTGGIDHREIHHPNEIAQNQAHGCTAN---TGANIWMHNNFLVDRTGKMSKSSGEFLT 297 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------- 340 + L++ R + RL L HYR ++F L A++ L + QT Sbjct: 298 LQALMD------RGFHPLAYRLMCLQAHYRSEMEFGWDGLAAAQVRLKRLVQTVEGLRSR 351 Query: 341 --STSKGIIDP---AVLSALYNDLNTVSAIQALHKLARESTKNHDL----LPIFNASAHI 391 + SKG P + +AL +DL T A+ L ++ + ++ D+ L F+A+ + Sbjct: 352 ADAASKGDATPYRERLDAALSDDLATPRALPVLDEMLGDKKQSSDVRLAALADFDATLGL 411 Query: 392 LGIEVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + L A IE + ER K F+ +D IR L + G + D Sbjct: 412 QLTTLTRADLRTRPKTATVDEATIEAQLAERRAARAEKDFAKSDMIRDSLLAAGVEVMD 470 >gi|293400415|ref|ZP_06644561.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306815|gb|EFE48058.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 439 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 169/463 (36%), Positives = 243/463 (52%), Gaps = 56/463 (12%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + + I EF+ I + MYVCGPTVY++ HIGNARP++VFD L R + G K V V Sbjct: 1 MNQTIEEFKPIHEHEVNMYVCGPTVYNYPHIGNARPIVVFDTLKRTFQAL-GYK-VKMVS 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII+ A++ S IT K + + D L + P PR T + Sbjct: 59 NYTDVDDKIIKVAKECGVSE------KEITEKFIKAYNDDRLALHAMMPDAAPRVTETMD 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 +I I+ ++ GHAYE + ++ F +S+ +YG S ++ID+ +G R+ E K+NP D Sbjct: 113 AIIAFIELLVKKGHAYEIDGDVYFRVNSVESYGKLSNQQIDDLMVGARIDENSKKENPLD 172 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGK-VFDIHGGGLDLIFPHHENE 248 F LWKR T W SPW GRPGWH EC M + + G+ DIHGGG+DL FPHHENE Sbjct: 173 FTLWKR-TDEGIQWNSPWSVGRPGWHTECVVMINKEFHGEHTIDIHGGGMDLKFPHHENE 231 Query: 249 IAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 IAQS A AN WIHNG +N++G KMSKS GN I +++E K GG V+R Sbjct: 232 IAQSRAAYET-PIANYWIHNGMVNIDGEKMSKSLGNVIWAKDMIE--KIGGN-----VLR 283 Query: 309 LAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV----------------- 351 L HYR P++ + + A+ L K QTS + + A+ Sbjct: 284 WVFLSAHYRSPLNINEEAIETAKKELQK-VQTSLKQAYVKLALADVEITDEAEDTLLTPF 342 Query: 352 LSALYNDLNTVSAIQALH---KLARESTKNHDLLPIF--------NASAHILGIEVCKEH 400 + A+ +D+NT +A AL K+ ++ + ++ F +LGIE Sbjct: 343 MDAMQDDMNTPNAFAALFETVKVLNQTIRQREVDLAFLQRIVKTVETMLDVLGIE----- 397 Query: 401 LNKNISIAIE--KLVQERLILLKMKKFSSADYIRKQLESKGFI 441 N + ++ E +L + +K K F++AD R +L KG + Sbjct: 398 -NNRLILSDEDKELHHKWKAAVKEKDFATADDYRARLIEKGIL 439 >gi|94971018|ref|YP_593066.1| cysteinyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345] gi|122986084|sp|Q1IJF8|SYC_ACIBL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|94553068|gb|ABF42992.1| cysteinyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345] Length = 495 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 177/514 (34%), Positives = 247/514 (48%), Gaps = 79/514 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL KI FQ ++ + +RMY CGPTVYD+ HIGN R IV D L R L+ G K Sbjct: 3 LELFNTLSGKIETFQPLEDNEVRMYACGPTVYDYGHIGNFRTFIVVDTLRRFLKQS-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +V N+TD+DDKII A ++ ++ T+K + F++D L P Sbjct: 62 -LKHVMNVTDVDDKIIRNAARDGKTV------QEYTAKYRKAFLEDCEALNIEHPELLVN 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT+HI +M I+ + AY+ + F + P YG S++ G RV ++ Sbjct: 115 ATDHIDEMARFIKRMEDLDVAYKTEDGSYYFRIAKFPEYGKLSKKDFAGMNDGARVDVDE 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 Y K N DF LWK P E W++ G GRPGWHIECS MS YLG+ FDIH GG DL+F Sbjct: 175 YEKDNARDFALWKAPKPGEAKWDTVIGSGRPGWHIECSIMSMKYLGESFDIHLGGEDLVF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS +K AN W+H+ FL +EG+KMSKS GNF T+ +L+ Sbjct: 235 PHHENEIAQSESVTH-KKFANFWVHSRFLLVEGQKMSKSLGNFFTVRDLILM------GH 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTS-TSKGIIDPAVL--- 352 IR ++ YR+ ++FT L +A I + + QT ++G D L Sbjct: 288 KPSSIRFLLMSVPYRKQLNFTFDGLKQAAISVDRLRNFKRRIQTEPFAEGTNDKIGLMAN 347 Query: 353 -------SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGI-EV 396 +AL NDLNT A+ + L R+ K D+ + A I V Sbjct: 348 ETITKIKAALDNDLNTAEALAPIFDLVRDVNAAADAGEVKRGDVASLLEALQKFDEIFAV 407 Query: 397 CKEHLNKNISIA------------------------------IEKLVQERLILLKMKKFS 426 + + + A +E LV E K K F Sbjct: 408 LNDDDSGKVKFAVDWANQEGKADKISAETAEMAKAAGLSDEKVEALVAEHSAARKAKDFK 467 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +D IR +L G ILE+ K+ RWK+K Sbjct: 468 RSDAIRAELMESGIILENTKDG------VRWKRK 495 >gi|242310378|ref|ZP_04809533.1| cysteinyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489] gi|239522776|gb|EEQ62642.1| cysteinyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489] Length = 467 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 252/473 (53%), Gaps = 49/473 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++KIY++++++ +F I+P +R+YVCGPTVYD +H+G+AR IVFD+L R+LR G Sbjct: 2 QLKIYDSVQKEKVDFIPINPPEVRLYVCGPTVYDDSHLGHARSAIVFDLLRRVLR-ENGY 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V + +N TDIDDKII ++ Q S I+ IT Q+++ + L +P Sbjct: 61 K-VYFAKNFTDIDDKIINKSLQTGLS------ITEITKTYIQKYLDEMEALGVERADIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 +AT + + +IQ ++ G AY+ N +I + YGS S R + E ++ +R+ Sbjct: 114 KATESLESICEMIQELLDKGFAYQTPNGDIYLSVAKDSKYGSLSGR-VAELELQSRIHNS 172 Query: 183 YHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLG----KVFDIHGGG 237 K++ DF LWK + + G+ESP+G+GRPGWHIECSAM +L DIHGGG Sbjct: 173 EQKRDSKDFALWKSYKGIGDIGYESPFGKGRPGWHIECSAMIKKHLAYSGQYAIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE +Q+ CA+ + A WIHNGF+ + G KM+KS GN I + L Sbjct: 233 ADLLFPHHENEASQTRCAEN-QTIAKYWIHNGFVTINGEKMAKSLGNSFFIKDAL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKGIID- 348 +++ ++R +L THYR ++F + L A+ L + +P + + Sbjct: 287 --KNYDGEILRFYLLGTHYRAGLNFAEEDLLSAKKRLDRIYRIKKRIYPIQEADESQCNE 344 Query: 349 --PAVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFNASAHILGI--- 394 A+L AL +DLN A+ + + ++ K + +LG+ Sbjct: 345 FKEAILEALNDDLNISKALSVVDEFINKANEFLDKKQKDKISSIAGFLAILERLLGVGGK 404 Query: 395 ---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + +++ IE L+ +R K K F+ AD IR++L S G + D Sbjct: 405 NPFEYFQLGVSEEQKQEIENLIAQRTEAKKQKDFAKADEIRERLHSMGIEIMD 457 >gi|34541486|ref|NP_905965.1| cysteinyl-tRNA synthetase [Porphyromonas gingivalis W83] gi|61216267|sp|Q7MTR6|SYC_PORGI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|34397803|gb|AAQ66864.1| cysteinyl-tRNA synthetase [Porphyromonas gingivalis W83] Length = 490 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 248/492 (50%), Gaps = 54/492 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++IYNTL RK F+ I ++ +YVCGPTVY AH+G+ARP I FD+LYR LR+ Sbjct: 1 MEHPLEIYNTLHRKKERFEPIHKPHVGLYVCGPTVYGDAHLGHARPAITFDLLYRYLRHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V YVRNITD+ +DKI ++AR E P+ +T ++ Sbjct: 61 GYQ--VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PMEVVQYYLT-----RYRHA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ G+AYE+ + FD YG S Sbjct: 113 MEALNVLPPSIEPMASGHIIEQIELVKQILKAGYAYESCGSVYFDVEKYNQDHRYGVLSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I+E TR + + K+N DF LWK + P W SPWG G PGWH EC+AM Sbjct: 173 RNIEEMINNTRRLDGQDEKRNGVDFALWKAAQPEHIMRWPSPWGMGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQ+ A + W+HN + + G+KM KS GNF Sbjct: 233 YLGEEFDIHGGGMDLVFPHHECEIAQA-VASQGHPIVRYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+ E +++ IR +L HYR +DF+ ++RL +A LL Sbjct: 292 ITLEEFFSGAHPSLNKAYSPMTIRFFILGAHYRGTVDFSNEALEAAEKGLERLLDAAALL 351 Query: 335 SKWP---QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-- 389 TS G + A+ +DLN+ I AL AR H+ +S Sbjct: 352 DGLKTADTTSVEVGDLRKRCYDAMNDDLNSPMVIAALFDAARAINAVHNGQGTITSSNLE 411 Query: 390 -----------HILGI---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 +LG+ ++ A++ L+ R K ++++D IR +L Sbjct: 412 ELRTTFRLFLFDLLGMRDERASSAGGSEAFGKAMDLLLSIRAEAKARKDWATSDKIRDEL 471 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 472 TALGFTIKDTKD 483 >gi|194334830|ref|YP_002016690.1| cysteinyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271] gi|194312648|gb|ACF47043.1| cysteinyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271] Length = 481 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 178/489 (36%), Positives = 245/489 (50%), Gaps = 69/489 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYN+L R EF + + MYVCGPTVY AH+G+A+ + FDV+ + LR+ G + V Sbjct: 5 IYNSLNRVKEEFIPLQDGVVTMYVCGPTVYGHAHLGHAKSYVSFDVVAKWLRHS-GYR-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 Y++NITD+ +DKI +AR+E P+ I T+ + +D RL Sbjct: 63 KYIQNITDVGHLTDDSDEGEDKIARQARKERID-PME-----IAQYYTRSYYEDMDRLGI 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM- 175 P P AT HIP + LI +I GHAYE N + F S YG S R +E + Sbjct: 117 DRPNIAPTATGHIPDQVNLISTLIEKGHAYEVNGNVYFSVESFKEYGKLSGRTTEEARQS 176 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G RV + K++PADF LWK++ EPG W+SPWG G PGWH ECSAM+ YLG+ Sbjct: 177 GGRVETRSEKRHPADFALWKKA---EPGHLMKWDSPWGSGYPGWHAECSAMAMKYLGETI 233 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG++ FPHHE EIAQS A + W+HN + + G KM KS GNFI + ++ Sbjct: 234 DIHGGGMENKFPHHECEIAQSEAATG-KPYVRYWMHNNMVTVNGTKMGKSLGNFINLKDI 292 Query: 292 LETKKFGGRSWPAP-VIRLAMLMTHYREPIDFTVQRL----TEAEILLSKWP---QTSTS 343 K+F AP VIR +L +HYR P+DF+ + T E L W Q + Sbjct: 293 F--KRF------APVVIRFFILQSHYRSPLDFSETAIDASRTGLEKLQDTWTRLQQAAPG 344 Query: 344 KGIIDP-----AVLSALYNDLNTVSAIQALHKLARE--------STKNHDLL----PIFN 386 G I+ + A+ +D NT AI L LA+ S N D L +F Sbjct: 345 SGEIETRPFQERLTEAMNDDFNTPIAIAVLFDLAKAVNTAIAAPSGLNQDSLDRCISLFR 404 Query: 387 A-SAHILGI---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY-----IRKQLES 437 + +LGI ++ N V LI ++ + S DY IR +L Sbjct: 405 SFGEEVLGILQNPATEKGKTNNEDEETLDTVMNLLIDIRSRARSGKDYELSDLIRDKLAE 464 Query: 438 KGFILEDYK 446 G ++D + Sbjct: 465 AGITMKDTR 473 >gi|227547937|ref|ZP_03977986.1| cysteine--tRNA ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079948|gb|EEI17911.1| cysteine--tRNA ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 485 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 246/478 (51%), Gaps = 63/478 (13%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRYYYGE 63 +I++T R+ F+ + ++ +Y+CG T HIG+ R + FD++ R L + Y Sbjct: 21 RIFDTSARRSRVFEPVREGHVSIYLCGATPQSSPHIGHLRSGVAFDIVRRWFLAKGY--- 77 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKI+ +A + P + +S ++F + L L P+ +P Sbjct: 78 -DVAFVRNVTDIDDKILAKAAEN--GRPWWEWVSTYE----REFTRAYNLLGVLPPSVEP 130 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-----PNYGSFSRRKIDEQKMGTR 178 RAT H+ QM+ ++ +I +G AYEA + FD ++ +YGS S +++E + G Sbjct: 131 RATGHVTQMVDYMRRLIDNGFAYEAAGSVYFDVAAWVRAEGSDYGSISGNRVEEMEPGE- 189 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P+ K+ P DF LWK + P EP W +PWG GRPGWHIECSAM++ YLG FDIH GGL Sbjct: 190 -PDNRGKRGPHDFALWKAAKPGEPSWPTPWGEGRPGWHIECSAMATWYLGGSFDIHAGGL 248 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQS A + A W+HN ++ + G KMSKS GN ++I+ +L T + Sbjct: 249 DLQFPHHENEQAQSHAAG--DGFATYWMHNHWVTMAGEKMSKSLGNVLSIDNMLSTVR-- 304 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPA 350 PV +R + HYR ++++ + L+EA E +++ + K P Sbjct: 305 ------PVELRYYLGSAHYRSVLEYSPEALSEAAAGYRRIEDFVAR--AGTPEKTTWTPQ 356 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASAHILGIE------ 395 AL +D + A+ +H RE K ++ A A +LG++ Sbjct: 357 FEQALNDDFSVPKALAEIHNHVREGNKALAAGDGARASEIAGGVRAMAAVLGVDPGEWAR 416 Query: 396 ---------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E NK + + + ++ R K ++SAD +R +L + G + D Sbjct: 417 AAGEGVGGASSSEAANKALDVLVAAELERRAAARAEKDWASADAVRDRLAAAGIDITD 474 >gi|229094812|ref|ZP_04225817.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-29] gi|228688555|gb|EEL42428.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-29] Length = 420 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 227/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y E V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYE--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N++ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYINIDNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------Q 339 +++++ + + +IR ML HYR PI+F+ + L L + + Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 340 TSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 +S + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSANLTDHNEKWLAEMEKFQAAFEEAMDDDFNTANAITELYNVANHANQYLLEEHTSK 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ KE L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAKEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KERNIILED------TAQGTRWKR 419 >gi|221633882|ref|YP_002523108.1| cysteinyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] gi|221156184|gb|ACM05311.1| cysteinyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] Length = 407 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/349 (39%), Positives = 195/349 (55%), Gaps = 21/349 (6%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++N+L I F +D +R+YVCG T YD H+G+A +VFD+L R+ +Y+ Sbjct: 6 SEAVRLFNSLTGTIEPFAPLDGRTVRLYVCGVTPYDTTHMGHAMTYLVFDILNRICQYH- 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G + V YV+NITDIDD I+ +ARQ + + + + +QF +D L L P+ Sbjct: 65 GWR-VKYVQNITDIDDDILRKARQ------VGEPWDRLGDRYIRQFQEDLNALNVLFPSV 117 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ-----KMG 176 PRAT IP MI +IQ ++ G AY + + F +S P+YG R DE + G Sbjct: 118 FPRATEEIPLMIEIIQKLLERGAAYMRDGNVYFRVASDPDYGHLCRCSRDEMIRLSAERG 177 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P+ K++P DF+LW+ + P EP W+SPWG GRPGWHIECSAM+ YLG D+HGG Sbjct: 178 AD-PQDPRKEDPLDFLLWQAAQPGEPTWDSPWGPGRPGWHIECSAMAMKYLGPQIDVHGG 236 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLI+PHHE+EIAQS A W+H + EG KMSKS GN + + + L Sbjct: 237 GYDLIYPHHESEIAQSESYTGTSPFARFWVHVAMVEYEGAKMSKSLGNLVLVRDTL---- 292 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG 345 R IRL +L HYR P + E L+ + + T+ G Sbjct: 293 ---RRHTGDAIRLYLLSHHYRTPFAYEDDGPARFEPLVQRLREAVTAPG 338 >gi|229113766|ref|ZP_04243201.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock1-3] gi|228669637|gb|EEL25044.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock1-3] Length = 420 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 227/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y E V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYE--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N++ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYINIDNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------Q 339 +++++ + + +IR ML HYR PI+F+ + L L + + Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 340 TSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 +S + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSANLTDHNEKWLAEMEKFQAAFEEAMDDDFNTANAITELYNVANHANQYLLEEHTSK 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ KE L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAKEEL---LDEEIEVLIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KERNIILED------TAQGTRWKR 419 >gi|34556870|ref|NP_906685.1| cysteinyl-tRNA synthetase [Wolinella succinogenes DSM 1740] gi|61216261|sp|Q7MA68|SYC_WOLSU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|34482585|emb|CAE09585.1| CYSTEINYL-TRNA SYNTHETASE (FRAGMENT) [Wolinella succinogenes] Length = 467 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 169/472 (35%), Positives = 251/472 (53%), Gaps = 49/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKI+++++R+ EF + + +YVCGPTVYD +H+G+AR I FD+L RL+ + G + Sbjct: 3 IKIFDSVKREKVEFIPLKKGEVSLYVCGPTVYDDSHLGHARSAIAFDLLRRLME-FEGYR 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII++ S+ + I IT + +++D +L P +PR Sbjct: 62 -VRFVKNFTDIDDKIIKK------SLESGEEIGAITERYITSYLEDMQKLGIKRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M +IQ+++ G AY+ +I D P+YG S R D +++ +R+ Sbjct: 115 ATESLDLMWEMIQSLLQKGIAYQTPRGDIYLDVKQDPSYGKLSGRGEDLEQV-SRIESSE 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGK----VFDIHGGGL 238 K++P DF LWK + G+ESP+GRGRPGWHIECSAM +L K DIH GG Sbjct: 174 EKRDPRDFALWKSYKGQSDVGYESPFGRGRPGWHIECSAMIEKHLAKEGDYAIDIHAGGS 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE Q+ CA E A W+HNGF+ + G KMSKS GN + + L Sbjct: 234 DLLFPHHENEACQTRCATGRE-LAKYWMHNGFVTINGEKMSKSLGNSFFVKDAL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---IIDPA----- 350 R + V+R +L THYR ++F+ + L ++ L + + G + P+ Sbjct: 287 -RVYDGEVLRFYLLSTHYRMGLNFSEEDLLASKKRLDRLYRLKKRVGEGEVGAPSEKFLE 345 Query: 351 -VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA-SAHILG-IEVCKEHLNKNISI 407 +L L +D+N A+ A+ ++ S + D P A A I G +EV + L Sbjct: 346 RLLEGLRDDMNISRALSAMDEMLTLSNEELDSSPKERALQATIRGNLEVLERLLGIGAKS 405 Query: 408 AI---------------EKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I E+L++ER K K F+ AD IRK L +G L D Sbjct: 406 PILYFQMGVSPEEKEKIEELIKERAEAKKAKDFARADEIRKSLSDQGIALLD 457 >gi|108801700|ref|YP_641897.1| cysteinyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119870851|ref|YP_940803.1| cysteinyl-tRNA synthetase [Mycobacterium sp. KMS] gi|123368663|sp|Q1B2P3|SYC_MYCSS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629832|sp|A1UMF5|SYC_MYCSK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|108772119|gb|ABG10841.1| cysteinyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119696940|gb|ABL94013.1| cysteinyl-tRNA synthetase [Mycobacterium sp. KMS] Length = 481 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 52/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T+ + +F + ++ +Y+CG TV HIG+ R + FDVL R L + Sbjct: 17 LRLYDTMTGAVRDFVPLRDGHVSIYLCGATVQGLPHIGHVRSGVAFDVLRRWLTAKGLD- 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A P + + + F L L P+ +PR Sbjct: 76 -VAFIRNVTDIDDKILNKAAD--AGRPWWE----WAATYERAFSAAYDALGVLPPSAEPR 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ LI+ +I GHAY + ++ F+ +++P+YG S +ID+ G V Sbjct: 129 ATGHITQMVELIERLIDRGHAYTGDGDVYFNVATLPDYGKLSGHRIDDVHQGEGVATG-- 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P EP W +PWGRGRPGWH EC AM YLG FDIH GG+DL+FPH Sbjct: 187 KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMCEAYLGAEFDIHAGGMDLVFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG++ + G KMSKS GN ++I +L+ + A Sbjct: 247 HENEIAQAEAAG--DGFARFWLHNGWVTMGGEKMSKSLGNVLSIPAVLQRVR-------A 297 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGII-----DPAVL 352 +R + HYR ++F+ L +A E L + T G + P Sbjct: 298 AELRYYLGSAHYRSMLEFSETALQDAVKAYAGVEDFLHR---VRTRVGTVVPGDWTPKFA 354 Query: 353 SALYNDLNT------VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK------EH 400 +AL +DL+ V A +A+ A +S + + + ++GI C E Sbjct: 355 AALDDDLSVPIALAEVHAARAVGNRALDSGDHETAMTQARSIRAMMGILGCDPLDERWES 414 Query: 401 LNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ I + + + R K +++AD IR +L+ G + D + Sbjct: 415 RDETSAALAAIDVLVRWALDSRADARNRKDWATADQIRDRLKEAGIEVTDTAD 467 >gi|11387154|sp|Q9RTT6|SYC_DEIRA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 498 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 171/507 (33%), Positives = 253/507 (49%), Gaps = 78/507 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +Y+T++R+ F P + MY+CGPTVY AH+G+A+ + FDV+ R L ++ + Sbjct: 18 ITLYDTMQRQKVPFVPGTPGYVGMYLCGPTVYSDAHLGHAKKEVAFDVIRRALTHFGYQ- 76 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV NITD+ +DK+ RAR E P+ + K F +D L Sbjct: 77 -VRYVSNITDVGHLLNDADEGEDKLQARARLEQLE-PME-----VADKYFWSFFRDMDAL 129 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P+ PRAT HI + I LI+ +I GHAYE+ + FD S P YG S RK+D+Q+ Sbjct: 130 NVLRPSINPRATGHIQEQIKLIEELIEKGHAYESAGSVYFDVRSWPEYGKLSGRKLDDQE 189 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 GTR + K++P DF LWK++ P W+SPW G PGWHIECSAMS YLG+ FDI Sbjct: 190 EGTREAVRDEKRDPRDFALWKKAEPEHLMRWDSPWSVGFPGWHIECSAMSLKYLGEGFDI 249 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHE EIAQ+ A A W+HN L + G KMSKS GNF TI ++L Sbjct: 250 HGGGLDLQFPHHEAEIAQAEAAG--HHFARYWMHNNMLTIGGEKMSKSKGNFTTIQDIL- 306 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------S 341 + + V+R ++ +HYR + + A + +T + Sbjct: 307 ------KKYDPMVVRFLLVSSHYRSVTEMNEEAFASAANGYRRLSETLHEIERRLKDAPA 360 Query: 342 TSKGIIDPAVLS-------ALYNDLNTVSAIQALHKL--------------------ARE 374 S +D + + A+ +D NT A+ +L L AR+ Sbjct: 361 GSDTALDSKIAARVTEFEDAMRDDFNTPKAVASLFGLTGELNTALNAGPVGRDTLERARD 420 Query: 375 STKN--HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 + ++ D+L +F + + + I ++ +++ R K+++ AD +R Sbjct: 421 AYRSLGGDVLGLFAETGSAASVAQDDASV---IDALMDLVLKARQNYRLQKQYAEADELR 477 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQ 459 + L G +ED K+ RWK+ Sbjct: 478 ETLGKAGITVEDTKDG------ARWKR 498 >gi|331699815|ref|YP_004336054.1| cysteinyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190] gi|326954504|gb|AEA28201.1| cysteinyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190] Length = 482 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 244/475 (51%), Gaps = 49/475 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++T R+ +F + + MYVCG TV HIG+ R + +DVL R L Y + Sbjct: 20 SLRLHDTATREQRDFVPLRAGTVSMYVCGATVQGVPHIGHVRSSLNYDVLRRWLTYSGHD 79 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V VRN+TDIDDKI+ +A P + + + + F L CL + +P Sbjct: 80 --VLLVRNVTDIDDKILRKAADA--GRPWWE----WAATHERAFSAAYDALGCLPASAEP 131 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT H+ QM+ LI +I GHAY A ++ F S P YGS S +K+D+ G + Sbjct: 132 RATGHVTQMVDLIARLIDRGHAYAAGGDVYFAVRSFPEYGSLSGQKVDDVAQGE--GDCG 189 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W +PWG GRPGWH+ECSAM++ YLG FDIHGGGLDL+FP Sbjct: 190 DKRDPLDFTLWKGAKPGEPSWPTPWGAGRPGWHLECSAMATAYLGPEFDIHGGGLDLVFP 249 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS A + A W+HN ++ + G KMSKS GN ++I +L+ + Sbjct: 250 HHENEQAQSHAAG--DGFARYWLHNAWVTMGGEKMSKSLGNTLSIPAMLQRVR------- 300 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGI---IDPAVLS 353 +R ++ HYR I+++ L+E+ E L + + + + G+ + A + Sbjct: 301 GVELRYYLVGPHYRSSIEYSDAALSESVSAYRRIEGFLGRVTERAGTPGVAAEVPAAFAA 360 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEHLNKN 404 AL +DL T A+ +H RE D A +LG++ E Sbjct: 361 ALDDDLGTPGALAVVHNTVREGNSALDAGDHAAAVRAAESVRAMTGVLGLDPLDEKWAGG 420 Query: 405 ---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 + ++ L+Q R + F++AD +R +L + G +ED PD Sbjct: 421 GSDTAALGALGSLVDDLLQRRQEARAARDFAAADEVRDRLTAAGISVED--GPDG 473 >gi|320108591|ref|YP_004184181.1| cysteinyl-tRNA synthetase [Terriglobus saanensis SP1PR4] gi|319927112|gb|ADV84187.1| cysteinyl-tRNA synthetase [Terriglobus saanensis SP1PR4] Length = 492 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 179/511 (35%), Positives = 252/511 (49%), Gaps = 76/511 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++NTL ++ + +RMY CGPTVYD+ HIGN R + DVL R G K Sbjct: 3 IDLFNTLGGRVEALVPQHDNELRMYCCGPTVYDYGHIGNFRTFLHVDVLRRFA-ALKGMK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +V N+TD+DDKII A ++PI + T+K + F +D L P R Sbjct: 62 -LKHVMNVTDVDDKIIRNAAA--ANMPIAE----YTAKFERAFFEDMDALGVQRPEIIAR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EK 182 AT +I M+ LI+ + AY+ + F + P+YG S++ D + G RV ++ Sbjct: 115 ATENIGDMVTLIEKLASEDIAYKTEDGSWYFRIARFPDYGKLSKKDFDGIEDGARVDVDE 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 Y K DF LWK P E W++ G GRPGWHIECSAM+ +LG FD+H GG DL F Sbjct: 175 YEKDAARDFALWKAVKPNEHSWDTSLGIGRPGWHIECSAMAMKHLGPTFDLHAGGEDLTF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W H FL +EG+KMSKS GNF T+ +LL + + Sbjct: 235 PHHENEIAQSEAASHV-PLARHWFHVRFLLVEGKKMSKSEGNFYTLRDLLL------KGY 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--TSKG---IIDPAVL----- 352 A IR +L YR ++FT + LTE+ + + + KG + + A L Sbjct: 288 RASAIRFLLLSVPYRHQMNFTFEGLTESANAIDRLRTFARRLDKGEFAVGENAGLAALTT 347 Query: 353 -------SALYNDLNTVSAIQALHKLARESTKN--------------HDLLPIFNASAHI 391 +AL NDLNT A A+ L R + DLL F++ + Sbjct: 348 EKLRLFDAALSNDLNTAEARAAIFDLVRAANSAADTGTLLAGNVASIRDLLARFDSIFDV 407 Query: 392 L---GIEVCKEHLN----------------KNISIA---IEKLVQERLILLKMKKFSSAD 429 L +V ++ L + S + I+KLV ER + K + F+ AD Sbjct: 408 LTDRDQQVTRDALAWAEAEGRLGEAAPDLVASSSFSEDDIQKLVDERTLAKKQRNFARAD 467 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IRK+L KG ++ED G+ WK+K Sbjct: 468 AIRKELAEKGILIED------GKDGVSWKRK 492 >gi|302348041|ref|YP_003815679.1| Cysteinyl-tRNA synthetase [Acidilobus saccharovorans 345-15] gi|302328453|gb|ADL18648.1| Cysteinyl-tRNA synthetase [Acidilobus saccharovorans 345-15] Length = 476 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 173/484 (35%), Positives = 240/484 (49%), Gaps = 65/484 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL R+ F+ P + MYVCGPTVYD+ HIG+A+ + FD + R L Sbjct: 3 LTVTNTLGRREEVFRPWSPPLVTMYVCGPTVYDYVHIGHAKTFVAFDGIKRYLSLI--GY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+NITDIDDKII+RA S + Q +++ +RL H PR Sbjct: 61 SVYHVQNITDIDDKIIKRASDRGVSW------KEVADSYAQDYLESLSRLNIRVDLH-PR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFS---RRKIDEQKMGTRVP 180 T+HI ++I I +I G+AY A + + FD + P+YG S + + +Q G V Sbjct: 114 VTSHINEIIDFIGKLIEKGYAYVAPSGSVYFDVDAYPDYGRLSGNFNKALWDQGEGV-VS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 EK H P DF LWK + P EP WESPWGRGRPGWHIECS MSS YLG DIHGGG DL Sbjct: 173 EKRH---PYDFALWKAAKPGEPWWESPWGRGRPGWHIECSVMSSRYLGSRIDIHGGGSDL 229 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENE AQS W+H G L + G KMSKS GN +++ + + Sbjct: 230 IFPHHENERAQSESLFG-GPWVKYWLHTGMLTIRGEKMSKSLGNIVSLRDAIN------- 281 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----------------SK 344 W VIR+ +L +HYR ++++ Q L +A+ L+ + ++ + Sbjct: 282 EWGPNVIRMWVLTSHYRGSLEYSEQSLGQAKKLVERLRDIASDVVKRLSKEEYVNYMKAA 341 Query: 345 GIIDPAVLSALY--------NDLNTVSAIQALHKLARESTK-------------NHDLLP 383 + + L +LY D N A ++ L E K + +L Sbjct: 342 DVDELFKLRSLYLNWHAAMQRDFNMGEAAGSVWALTSEYYKYIASSESRALIAFTYKMLV 401 Query: 384 IFNASAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 FN +L + + S+ I+ LV+ R L K K + ADYIR +L S G Sbjct: 402 DFNRVYAVLDDIFERAPMAPVASLEDQLIDLLVEVRSQLRKNKMYDLADYIRSKLASYGI 461 Query: 441 ILED 444 L D Sbjct: 462 TLVD 465 >gi|170049121|ref|XP_001870889.1| cysteinyl-tRNA synthetase [Culex quinquefasciatus] gi|167871024|gb|EDS34407.1| cysteinyl-tRNA synthetase [Culex quinquefasciatus] Length = 516 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 176/498 (35%), Positives = 248/498 (49%), Gaps = 77/498 (15%) Query: 5 IKIYNTLERKITEFQ-AIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IY+ ER Q A DPS+ Y CGPTVYD AHIG+A + D++ R+LR ++ Sbjct: 28 IRIYSCKERAKVPLQLASDPSSFTSFYTCGPTVYDSAHIGHASCYVRLDIVQRILRDHFR 87 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V+ + NITDIDDKII+RA ++ P D ++ + Q+F D RL P + Sbjct: 88 LRLVSAM-NITDIDDKIIKRAGED--GRPWQD----VSRRYEQEFWGDLQRLNVRLPDIR 140 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 R T+HIP ++ ++ +I G AY+++++ + F+TS YG E+ Sbjct: 141 LRVTDHIPAIVGFVEALIREGFAYKSSDDSVYFETSRYSQYGKLQNIPAVEESTSE---- 196 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KK+ ADF LWK + P EP WESP+G GRPGWHIECS +++ GK D H GGLDL Sbjct: 197 --GKKSAADFALWKAAKPGEPAWESPFGPGRPGWHIECSTLATQIFGKRLDFHAGGLDLR 254 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENE AQSCC + WIH G L+LEG+ KMSKS N I+I ELLE Sbjct: 255 FPHHENEEAQSCCYHGVPDWVQHWIHTGQLHLEGQTAKMSKSLKNTISIGELLERSS--- 311 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------PQT---- 340 A R+ L++HYR I+F Q +T A +L K+ P T Sbjct: 312 ----ADEFRMLCLLSHYRSAIEFGDQSMTVATNVLRKFHSFFDDSKAYVSGVKPATVINS 367 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-----------------ARESTKNHD 380 ++ ID + L ND NT SAI +L L A ES Sbjct: 368 ADLQSTLQEIDLKIDEFLRNDFNTASAITSLGDLASVVHKSINQKPPEAVQASESGTVQA 427 Query: 381 LLPIFNASAHILGIEVCKEHLNKNIS------------IAIEKLVQERLILLKMKK-FSS 427 + ++ G+E E+ IS + I V+ + I K ++ F+ Sbjct: 428 VTNYIRDKLNLFGLEAFGENRKSEISSKDSTGQIIDSVVQIRNSVRGQAIESKDRRLFAV 487 Query: 428 ADYIRKQLESKGFILEDY 445 D +R QL+ G ++D+ Sbjct: 488 CDQMRNQLKQAGVEVKDH 505 >gi|126437687|ref|YP_001073378.1| cysteinyl-tRNA synthetase [Mycobacterium sp. JLS] gi|187629831|sp|A3Q6W0|SYC_MYCSJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126237487|gb|ABO00888.1| cysteinyl-tRNA synthetase [Mycobacterium sp. JLS] Length = 481 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 52/473 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T+ + +F + ++ +Y+CG TV HIG+ R + FDVL R L + Sbjct: 17 LRLYDTMTGAVRDFVPLRDGHVSIYLCGATVQGLPHIGHVRSGVAFDVLRRWLTAKGLD- 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN+TDIDDKI+ +A P + + + F L L P+ +PR Sbjct: 76 -VAFIRNVTDIDDKILNKAAD--AGRPWWE----WAATYERAFSAAYDALGVLPPSAEPR 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QM+ LI+ +I GHAY + ++ F+ +++P+YG S +ID+ G V Sbjct: 129 ATGHITQMVELIERLIDRGHAYTGDGDVYFNVATLPDYGKLSGHRIDDVHQGEGVATG-- 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P EP W +PWGRGRPGWH EC AM YLG FDIH GG+DL+FPH Sbjct: 187 KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMCEAYLGAEFDIHAGGMDLVFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + A W+HNG++ + G KMSKS GN ++I +L+ + A Sbjct: 247 HENEIAQAEAAG--DGFARFWLHNGWVTMGGEKMSKSLGNVLSIPAVLQRVR-------A 297 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGII-----DPAVL 352 +R + HYR ++F+ L +A E L + T G + P Sbjct: 298 AELRYYLGSAHYRSMLEFSETALQDAVKAYAGVEDFLHR---VRTRVGTVVPGDWTPKFA 354 Query: 353 SALYNDLNT------VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK------EH 400 +AL +DL+ V A +A+ A +S + + + ++GI C E Sbjct: 355 AALDDDLSVPIALAEVHAARAVGNRALDSGDHETAMTQARSIRAMMGILGCDPLDERWES 414 Query: 401 LNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ I + + + R K +++AD IR +L+ G + D + Sbjct: 415 RDETSAALAAIDVLVRWALDSRAEARNRKDWATADQIRDRLKEAGIEVTDTAD 467 >gi|315104398|gb|EFT76374.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL050PA2] Length = 490 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 240/486 (49%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 17 FKLYNTATHGIETFKPLREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 70 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 71 CSGYRVTVVANVTDIDDKILAK------SAAAGTPWWAHAYHYENELHAAYKALGCRPPT 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD S P YG S ++DE Sbjct: 125 YEPRATGHIPEMIELVKTLIEKGHAYPAPDGSGDVYFDVRSWPRYGELSGMRVDEMSPAE 184 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 185 DSDPR-GKRDPRDFALWKGHKEDEPETASWVSPWGRGRPGWHLECSAMSGKYLGEAFDIH 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A+ W+HN ++ + G KMSKS GN ++E+ T Sbjct: 244 GGGIDLRFPHHENELAQSAAAGR--PFAHYWMHNAWVTMSGEKMSKSLGNTAQVSEV--T 299 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T+ L EA + + Sbjct: 300 KTYSPRA-----VRYFLLAPHYRSMIEFSPSDEGTMGSLDEATKAIERIDSFLDRASNLV 354 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL-----------ARESTKNH-----DL 381 + T+ + A ++A+ +DL T A+ AL E+T++H + Sbjct: 355 GEQVTASHELSEAFVTAMDDDLGTPQAVAALFSQITEGNKSVSIGDAEATRHHLSQVKAM 414 Query: 382 LPIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 L +F + + + L + + ++++R K +++AD IR L + Sbjct: 415 LAVFGLDPQAPEWADVAGSDDRLEPVVDGLVHAMLEQRAEARARKDWATADAIRDTLTNL 474 Query: 439 GFILED 444 G +ED Sbjct: 475 GLTIED 480 >gi|270339596|ref|ZP_06005360.2| cysteine-tRNA ligase [Prevotella bergensis DSM 17361] gi|270334442|gb|EFA45228.1| cysteine-tRNA ligase [Prevotella bergensis DSM 17361] Length = 498 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 175/497 (35%), Positives = 255/497 (51%), Gaps = 59/497 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK+ + +YNTL R F+ + N+ MYVCGPTVY H+G+ARP I FDVL+R L++ Sbjct: 3 MKQNLLVYNTLTRSKELFKPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDVLFRYLKHL 62 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V YVRNITD+ +DKI ++AR E P+ I T ++ K Sbjct: 63 GYQ--VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----IAQHYTNRYHKA 114 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD + YG S Sbjct: 115 MEALNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSIYFDVAKYDKDHKYGILSG 174 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R + + +R + K+N ADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 175 RNLTDIINNSRELSGTDEKRNQADFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRK 234 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DL+FPHHE EIAQ+ A + E+ W+HN + + G+KM KS GNF Sbjct: 235 YLGDHFDIHGGGMDLVFPHHECEIAQA-VASQGEQMVRYWMHNNMITINGQKMGKSLGNF 293 Query: 286 ITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE------------- 331 IT+ + +P+ IR +L HYR +DF+ L A+ Sbjct: 294 ITLEQFFNGDHESLEQAYSPMTIRFFILSAHYRGTVDFSNDALKAAKKGLEKLMTGIADL 353 Query: 332 --ILLSKWPQTSTSKGI--IDPAVLSALYNDLNTVSAIQALHK--------LARESTKNH 379 I SK Q T+K + + + A+ +DL T I AL + L ++ + Sbjct: 354 DRIQPSKGSQPDTAKFVKALRQRLYDAMNDDLQTPLVISALFEACHLVNLLLDHKTKISE 413 Query: 380 DLLPIFNASAHI-----LGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSADY 430 D L + + H+ LG++ + N+ A K+V+ L L + K ++++D Sbjct: 414 DDLKELSDTMHVFTFDLLGLQNEQGESNEVREEAYGKVVEMVLKLRQQAKEAKDWATSDE 473 Query: 431 IRKQLESKGFILEDYKN 447 IR L GF ++D K+ Sbjct: 474 IRDALAEAGFEVKDTKD 490 >gi|188995669|ref|YP_001929921.1| cysteinyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277] gi|188595349|dbj|BAG34324.1| cysteinyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277] Length = 486 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 246/490 (50%), Gaps = 58/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL RK F+ I ++ +YVCGPTVY AH+G+ARP I FD+LYR LR+ + Sbjct: 1 MEIYNTLHRKKERFEPIHEPHVGLYVCGPTVYGDAHLGHARPAITFDLLYRYLRHLGYQ- 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD+ +DKI ++AR E P+ +T V L Sbjct: 60 -VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PMEVVQYYLTRYRHAMEV-----L 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKID 171 L P+ +P A+ HI + I L++ I+ G+AYE+ + FD YG S R I+ Sbjct: 113 NVLPPSIEPMASGHIIEQIELVKQILKAGYAYESCGSVYFDVEKYNQDHRYGVLSGRNIE 172 Query: 172 EQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGK 229 E TR + + K+N DF LWK + P W SPWG G PGWH EC+AM YLG+ Sbjct: 173 EMINNTRRLDGQDEKRNGVDFALWKAAQPEHIMRWPSPWGMGFPGWHCECTAMGRKYLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIHGGG+DL+FPHHE EIAQ+ A + W+HN + + G+KM KS GNFIT+ Sbjct: 233 EFDIHGGGMDLVFPHHECEIAQA-VASQGHPIVRYWMHNNMITINGQKMGKSLGNFITLE 291 Query: 290 ELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWP 338 E +++ IR +L HYR +DF+ ++RL +A LL Sbjct: 292 EFFSGAHPSLNKAYSPMTIRFFILGAHYRGTVDFSNEALEAAEKGLERLLDAAALLDGLK 351 Query: 339 ---QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------ 389 TS G + A+ +DLN+ I AL AR H+ S Sbjct: 352 TADTTSVEVGDLRKRCYDAMNDDLNSPMVIAALFDAARAINAVHNGQGTITPSDLEELRT 411 Query: 390 -------HILGIEVCKEHL-----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 +LG+ C E ++ A++ L+ R K ++++D IR +L + Sbjct: 412 TFRLFLFDLLGM--CDERASSAGGSEAFGKAMDLLLSIRAEAKARKDWATSDKIRDELTA 469 Query: 438 KGFILEDYKN 447 GF ++D K+ Sbjct: 470 LGFTIKDTKD 479 >gi|332665290|ref|YP_004448078.1| cysteinyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100] gi|332334104|gb|AEE51205.1| cysteinyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100] Length = 502 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 147/350 (42%), Positives = 199/350 (56%), Gaps = 28/350 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++KIYN+L ++ F+ I P + MYVCGPTVY H+GN R + FD++YR L++ Sbjct: 1 MNSELKIYNSLSKEKEVFRPIHPGRVGMYVCGPTVYSNVHLGNCRTFVSFDIVYRYLQFL 60 Query: 61 YGEKCVTYVRNITDI-----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 G K V YVRN+TD+ +DK+ +RAR E P+ I K T F Sbjct: 61 -GYK-VRYVRNVTDVGHLEGDVDTGGEDKLGKRARLEELQ-PME-----IAHKYTVGFHD 112 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----YGSF 165 L P+ +PRAT HIP+ I ++Q I+ +G+AYE N + FDT YG Sbjct: 113 MMRVFNVLPPSIEPRATGHIPEQIEMVQQILDNGYAYEVNGSVYFDTLKFAEKDGIYGEL 172 Query: 166 SRRKIDEQKMGTR--VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAM 222 S RKI++ +R + ++ K++P+DF +W ++ P W SPW G PGWH+ECSAM Sbjct: 173 SGRKIEDLIAESRNNLKKQDEKRHPSDFAIWIKAAPEHLMHWNSPWSVGFPGWHLECSAM 232 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 S+ YLGK FDIHGGG DL FPHHENE+AQ+ A A W+H L L G+KMSKS+ Sbjct: 233 STKYLGKTFDIHGGGNDLKFPHHENEVAQNYGACGC-TPARTWMHGNMLLLNGKKMSKSD 291 Query: 283 GNFITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 GN I EL K + + V+R ML THYR +D + L AE Sbjct: 292 GNSIMPEELFTGKSAHLSKGYTPMVVRFFMLQTHYRSTLDLSDDALQAAE 341 >gi|309789812|ref|ZP_07684391.1| cysteinyl-tRNA synthetase [Oscillochloris trichoides DG6] gi|308228116|gb|EFO81765.1| cysteinyl-tRNA synthetase [Oscillochloris trichoides DG6] Length = 397 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 142/385 (36%), Positives = 205/385 (53%), Gaps = 30/385 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R+ F + +YVCG T YD HIG+AR ++FD+L R LR+ E Sbjct: 1 MRLYNSLSREKDRFVLPADRPVTLYVCGVTPYDTTHIGHARTFLIFDLLVRFLRWQGAE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y +N+TD+DD + ERA ++ + D + + T+Q + D L + PT+ PR Sbjct: 60 -VRYCQNVTDVDDPLFERAARD--GVKWQD----LAATQTEQLLADYAALNIIMPTYFPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-----QKMGTRV 179 A+ I MI +I+ +I GHAY + F + P++G +R DE + G + Sbjct: 113 ASEEIGTMIPIIERLIELGHAYVIEGNVYFSVQTDPDFGKMARMGYDELLAVANQRGNK- 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P+ K++P DF+LW+ P +P W SPWG GRPGWHIECSAM++ YLG DIHGGG D Sbjct: 172 PDDPLKRDPLDFVLWQTGKPGDPTWPSPWGPGRPGWHIECSAMATRYLGAQIDIHGGGAD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHH EIAQ IW+H G + L+G KMSKS GN + + L+ Sbjct: 232 LIFPHHPCEIAQIEPVTGKRPFVQIWMHTGLVWLDGEKMSKSLGNLVFARDALKEHS--- 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----TVQRLTEAEILLSKWPQTSTSKGIIDP-----A 350 A +R + HYR+ D+ +L + S +DP Sbjct: 289 ----ADTLRWYLFSQHYRQEFDYQRAEVANAAEAVALLHTALDAVSGDGAPLDPDASRAE 344 Query: 351 VLSALYNDLNTVSAIQALHKLARES 375 L+AL +DLNT +A+ LH +AR + Sbjct: 345 FLAALEDDLNTPTALAVLHLMARNT 369 >gi|228470387|ref|ZP_04055290.1| cysteinyl-tRNA synthetase [Porphyromonas uenonis 60-3] gi|228307969|gb|EEK16852.1| cysteinyl-tRNA synthetase [Porphyromonas uenonis 60-3] Length = 492 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 256/493 (51%), Gaps = 59/493 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ IYNTLER F+ I P ++ +YVCGPTVY H+G+AR I FD+L+R L++ G Sbjct: 3 QLYIYNTLERAKVPFEPIAPPHVGLYVCGPTVYGDPHLGHARSAITFDILFRYLKHL-GY 61 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRN+TD+ +DKI ++A+ E P+ A + + D+ R Sbjct: 62 K-VRYVRNVTDVGHLEHDADDGEDKIAKKAKLEQLE-PMEVAYYYLNRYH------DSLR 113 Query: 114 LA-CLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 L L P+ +P A+ HI + I L+Q I+ G+AY + + FD + YG S R Sbjct: 114 LLNVLPPSIEPLASGHIIEQIQLVQQILDAGYAYVSEGSVYFDVLKYHADHPYGILSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K NP DF LWK++ P W SPW G PGWH EC+AM YL Sbjct: 174 VEDMISNTRELDGQDEKHNPLDFALWKKAQPSHIMRWPSPWSEGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGGLDL FPHHE EIAQ+ A + E W+HN + ++G+KM+KS GNFIT Sbjct: 234 GAHFDIHGGGLDLTFPHHECEIAQA-VASQGEPMVKYWMHNNMITVDGKKMAKSAGNFIT 292 Query: 288 INELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEI-LLS 335 + E AP+ IR +L HYR +DF+ QRL +A+ L S Sbjct: 293 LEEFFTGNHPALEQAYAPMTIRFFVLSAHYRGTVDFSNSALQAAEKGYQRLMDADAKLQS 352 Query: 336 KWPQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTKNHD------------L 381 P +++ ID A A+ +D+NT I AL AR HD L Sbjct: 353 LKPSATSTIEKIDLAERCKEAMDDDINTPMVIAALFDAARLINSIHDGHEQITSEQLEEL 412 Query: 382 LPIFNASAH-ILGIEVCKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 ++ H ILG++ E + + + A++ L+ R K + ++D IR + Sbjct: 413 RKTYDLYLHDILGMQSATEASDLSGSQQEAFAGAVDLLLDIRSKAKASKDWETSDLIRDK 472 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 473 LTALGFEIQDTKS 485 >gi|229119752|ref|ZP_04249013.1| Cysteinyl-tRNA synthetase [Bacillus cereus 95/8201] gi|228663653|gb|EEL19232.1| Cysteinyl-tRNA synthetase [Bacillus cereus 95/8201] Length = 420 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 230/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYSNLKHR 284 Query: 338 PQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST K + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|218258486|ref|ZP_03474853.1| hypothetical protein PRABACTJOHN_00508 [Parabacteroides johnsonii DSM 18315] gi|218225458|gb|EEC98108.1| hypothetical protein PRABACTJOHN_00508 [Parabacteroides johnsonii DSM 18315] Length = 492 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 175/493 (35%), Positives = 255/493 (51%), Gaps = 55/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLSIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHRA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD NYG S Sbjct: 113 MEALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESEGSVYFDVEKYNKDHNYGVLSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R ID+ TR + +K NP DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIDDMLNTTRALDGQDEKHNPIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + E + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGEDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---- 340 IT++E K +++ IR +L HYR +DF+ + L AE L + Sbjct: 292 ITLDEFFTGDNKMLSQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLMDAYHHL 351 Query: 341 ----STSKGIIDPAVL-----SALYNDLNTVSAIQALHKLAR--ESTKN----------H 379 + +D L A+ +DLN+ I L AR S K+ Sbjct: 352 MKLKAADVSTVDVKDLRRKCYDAMNDDLNSPIVIAHLFDAARTINSVKDGKATISLEDLK 411 Query: 380 DLLPIFNASA-HILGIE----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +L +F+ ILG++ + N+ A++ L+ R K ++++D IR + Sbjct: 412 ELQDVFHTFIFDILGMKDEAASAGNNSNEAFGKAMDLLLTIRQQAKANKDWATSDKIRNE 471 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 472 LTAIGFEIKDTKD 484 >gi|15806673|ref|NP_295393.1| cysteinyl-tRNA synthetase [Deinococcus radiodurans R1] gi|6459435|gb|AAF11225.1|AE002009_5 cysteinyl-tRNA synthetase [Deinococcus radiodurans R1] Length = 532 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 171/507 (33%), Positives = 253/507 (49%), Gaps = 78/507 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +Y+T++R+ F P + MY+CGPTVY AH+G+A+ + FDV+ R L ++ + Sbjct: 52 ITLYDTMQRQKVPFVPGTPGYVGMYLCGPTVYSDAHLGHAKKEVAFDVIRRALTHFGYQ- 110 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV NITD+ +DK+ RAR E P+ + K F +D L Sbjct: 111 -VRYVSNITDVGHLLNDADEGEDKLQARARLEQLE-PME-----VADKYFWSFFRDMDAL 163 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P+ PRAT HI + I LI+ +I GHAYE+ + FD S P YG S RK+D+Q+ Sbjct: 164 NVLRPSINPRATGHIQEQIKLIEELIEKGHAYESAGSVYFDVRSWPEYGKLSGRKLDDQE 223 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 GTR + K++P DF LWK++ P W+SPW G PGWHIECSAMS YLG+ FDI Sbjct: 224 EGTREAVRDEKRDPRDFALWKKAEPEHLMRWDSPWSVGFPGWHIECSAMSLKYLGEGFDI 283 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGGLDL FPHHE EIAQ+ A A W+HN L + G KMSKS GNF TI ++L Sbjct: 284 HGGGLDLQFPHHEAEIAQAEAAG--HHFARYWMHNNMLTIGGEKMSKSKGNFTTIQDIL- 340 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------S 341 + + V+R ++ +HYR + + A + +T + Sbjct: 341 ------KKYDPMVVRFLLVSSHYRSVTEMNEEAFASAANGYRRLSETLHEIERRLKDAPA 394 Query: 342 TSKGIIDPAVLS-------ALYNDLNTVSAIQALHKL--------------------ARE 374 S +D + + A+ +D NT A+ +L L AR+ Sbjct: 395 GSDTALDSKIAARVTEFEDAMRDDFNTPKAVASLFGLTGELNTALNAGPVGRDTLERARD 454 Query: 375 STKN--HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 + ++ D+L +F + + + I ++ +++ R K+++ AD +R Sbjct: 455 AYRSLGGDVLGLFAETGSAASVAQDDASV---IDALMDLVLKARQNYRLQKQYAEADELR 511 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQ 459 + L G +ED K+ RWK+ Sbjct: 512 ETLGKAGITVEDTKDG------ARWKR 532 >gi|198275421|ref|ZP_03207952.1| hypothetical protein BACPLE_01584 [Bacteroides plebeius DSM 17135] gi|198271757|gb|EDY96027.1| hypothetical protein BACPLE_01584 [Bacteroides plebeius DSM 17135] Length = 493 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 257/492 (52%), Gaps = 59/492 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ IYNTL RK F + ++ MYVCGPTVY H+G+ARP I FD+++R L + G Sbjct: 5 QLFIYNTLTRKKELFVPLHAPHVGMYVCGPTVYGDGHLGHARPAITFDIVFRYLTHL-GY 63 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRNITD+ +DKI ++AR E P+ + ++ K Sbjct: 64 K-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLLRYHKAMEA 116 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRKI 170 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S R + Sbjct: 117 LNVLPPSIEPHASGHIIEQIKLVEEILKNGYAYESKGSVYFDVAKYNKDHHYGVLSGRNL 176 Query: 171 DEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 D+ TR + + K NPADF LWK + P W SPW G PGWH EC+AM YLG Sbjct: 177 DDVLNTTRELDGQDEKHNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGRKYLG 236 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGG+DL+FPHHE EIAQ+ ++ + W+HN + + G+KM KS GNFIT+ Sbjct: 237 ETFDIHGGGMDLVFPHHECEIAQAVASEG-HQMVRYWMHNNMITINGQKMGKSLGNFITL 295 Query: 289 NELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------- 337 +E + K +++ IR +L HYR +DF+ + L AE L + Sbjct: 296 DEFFTGSNKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLLEGVKNLDRI 355 Query: 338 -PQTSTSKGIIDPAVL-----SALYNDLNTVSAIQAL------------HKLARESTKNH 379 P +TS I+P L A+ +DLNT I L K A + Sbjct: 356 TPAKATSG--IEPKGLREKCYEAMNDDLNTPIVISHLFDATRMINTVIDKKAAISAEDLE 413 Query: 380 DLLPIFNASA-HILGIEVCKEH---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 +L +F+ ILG++ E+ + ++ L+++R+ K ++++D IR L Sbjct: 414 ELKSVFHLFVFDILGLKAEAENNAAREEAYGKVVDMLLEQRMQAKANKDWATSDKIRDNL 473 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 474 AALGFEVKDTKD 485 >gi|15228880|ref|NP_191189.1| tRNA synthetase class I (C) family protein [Arabidopsis thaliana] gi|7572928|emb|CAB87429.1| cysteine-tRNA ligase [Arabidopsis thaliana] gi|332645985|gb|AEE79506.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] Length = 489 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 245/471 (52%), Gaps = 60/471 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K + +YNT+ + ++ ++P I +YVCG T YD++HIG+AR + FD+LYR LR+ Sbjct: 8 KPDLTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLLYRYLRHLG 67 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + VTYVRN TD+DDK + P++ ++++ ++++ D L CL PTH Sbjct: 68 YQ--VTYVRNFTDVDDKAKNCGEK-----PLD-----LSNRFCEEYLLDMAALQCLLPTH 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPR ++H+ Q+I +I+ II +G Y ++ F P+YG S +++D + G RV Sbjct: 116 QPRVSDHMEQIIKMIEKIIENGCGYAVGGDVFFSVDKSPSYGQLSGQRLDHTQAGKRVAV 175 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NPADF L K + EP WESPWG GRPGWHIE FDIHGGG DL Sbjct: 176 DSRKRNPADFALRKAAKSGEPSWESPWGHGRPGWHIE------------FDIHGGGADLK 223 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+C A + N W+HNG + KM KS NF TI ++ + Sbjct: 224 FPHHENEIAQTCAACE-DSGVNYWLHNGHVTNNNVKMGKSLNNFFTIRQI-------AAN 275 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRL-TEAEILLSKWPQTSTSKGIIDPAVLSALYNDL- 359 + +R ++ YR P++++V +L + ++ L S P G + SA ++ Sbjct: 276 YHPLALRHFLMSAQYRSPLNYSVSQLESSSDALYSLSPYREEMSGDVGKTQQSAEAKEMI 335 Query: 360 ----NTVSAIQ-ALHKLARESTKNH-----DLLPIFNASAHILGI----------EVCKE 399 N + I ++ KL + K L+ + A +L + E+ K+ Sbjct: 336 KKVKNALKFINVSISKLKKMQKKQRMSLVVSLVEVEKAVREVLDVLGLLTTLSYGELLKD 395 Query: 400 HLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K ++ A + + ++ER + K K F +D IR+ L KG LED Sbjct: 396 MKQKALTRAGMGEEEVLQRIEERNMARKSKDFRRSDRIRELLAFKGIFLED 446 >gi|228925343|ref|ZP_04088439.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931592|ref|ZP_04094498.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228983345|ref|ZP_04143558.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089221|ref|ZP_04220502.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-42] gi|228694060|gb|EEL47742.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-42] gi|228776335|gb|EEM24688.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228828020|gb|EEM73748.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834265|gb|EEM79806.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 420 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 159/445 (35%), Positives = 231/445 (51%), Gaps = 59/445 (13%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFI 286 G DIH GG DL FPHHENEIAQS KT A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFARYWMHNGYININNEKMSKSLGNFI 230 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK 336 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 231 LVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKH 283 Query: 337 WPQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDL 381 ++ST K + D A A+ +D NT +AI L+ +A + + H Sbjct: 284 RMESSTDLTDHNEKWLADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTS 343 Query: 382 LPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR Sbjct: 344 TVVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDD 400 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L+ + ILED + TRWK+ Sbjct: 401 LKDRNIILED------TAQGTRWKR 419 >gi|229182484|ref|ZP_04309735.1| Cysteinyl-tRNA synthetase [Bacillus cereus BGSC 6E1] gi|228600939|gb|EEK58508.1| Cysteinyl-tRNA synthetase [Bacillus cereus BGSC 6E1] Length = 420 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 230/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTGNMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 338 PQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST K + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|50841867|ref|YP_055094.1| cysteinyl-tRNA synthetase [Propionibacterium acnes KPA171202] gi|61216186|sp|Q6AAT0|SYC_PROAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50839469|gb|AAT82136.1| tRNA synthetase [Propionibacterium acnes KPA171202] gi|315106472|gb|EFT78448.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL030PA1] Length = 490 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 240/486 (49%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 17 FKLYNTATHGIETFKPLREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 70 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 71 CSGYRVTVVANVTDIDDKILAK------SAAAGTPWWAHAYHYENELHAAYKALGCRPPT 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD S P YG S ++DE Sbjct: 125 YEPRATGHIPEMIELVKTLIEKGHAYPAPDGSGDVYFDVRSWPRYGELSGIRVDEMSPAE 184 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 185 DSDPR-GKRDPRDFALWKGHKEDEPETASWVSPWGRGRPGWHLECSAMSGKYLGEAFDIH 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A+ W+HN ++ + G KMSKS GN ++E+ T Sbjct: 244 GGGIDLRFPHHENELAQSAAAGR--PFAHYWMHNAWVTMSGEKMSKSLGNTAQVSEV--T 299 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T+ L EA + + Sbjct: 300 KTYSPRA-----VRYFLLAPHYRSMIEFSPSDEGTMGSLDEATKAIERIDSFLDRASNLV 354 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL-----------ARESTKNH-----DL 381 + T+ + A ++A+ +DL T A+ AL E+T++H + Sbjct: 355 GEQVTASHELSEAFVTAMDDDLGTPQAVAALFSQITEGNKSVSIGDAEATRHHLSQVKAM 414 Query: 382 LPIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 L +F + + + L + + ++++R K +++AD IR L + Sbjct: 415 LAVFGLDPQAPEWADVAGSDDRLEPVVDGLVHAMLEQRAEARARKDWATADAIRDTLTNL 474 Query: 439 GFILED 444 G +ED Sbjct: 475 GLTIED 480 >gi|229194480|ref|ZP_04321283.1| Cysteinyl-tRNA synthetase [Bacillus cereus m1293] gi|228588946|gb|EEK46961.1| Cysteinyl-tRNA synthetase [Bacillus cereus m1293] Length = 420 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 159/445 (35%), Positives = 231/445 (51%), Gaps = 59/445 (13%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFI 286 G DIH GG DL FPHHENEIAQS KT A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFARYWMHNGYININNEKMSKSLGNFI 230 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK 336 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 231 LVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLRSTNNGLERIKTAYGNLKH 283 Query: 337 WPQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDL 381 ++ST K + D A A+ +D NT +AI L+ +A + + H Sbjct: 284 RMESSTDLTDHDEKWLADLKKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTS 343 Query: 382 LPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR Sbjct: 344 TVVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDD 400 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L+ + ILED + TRWK+ Sbjct: 401 LKDRNIILED------TAQGTRWKR 419 >gi|298372255|ref|ZP_06982245.1| cysteine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275159|gb|EFI16710.1| cysteine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 488 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 171/490 (34%), Positives = 258/490 (52%), Gaps = 53/490 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ I+NTL R+ F+ ++ + +YVCGPTVY AH+G+ARP I FD+L R LR+ Sbjct: 1 MQHKMYIHNTLSRRKELFEPLNEPFVGLYVCGPTVYGDAHLGHARPAITFDILVRWLRH- 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 V YVRNITD+ +DKI ++AR E P+ + T ++ Sbjct: 60 -NGYRVRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQHFTIRYHDA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +PRA+ HI + + +Q I+ +G+AYE+ + FD YG S Sbjct: 113 MRALNVLPPSIEPRASGHIIEQMEYVQRILDNGYAYESEGSVYFDVERYNKDHRYGILSG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + + K+ DF LWK+++P W S W G PGWH+ECSAM Sbjct: 173 RNIEDIIENTRELDGQSDKRRSVDFALWKKASPEHIMRWHSKWSDGFPGWHLECSAMGQK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQS ++ + W+HN + + G+KM KS GNF Sbjct: 233 YLGEKFDIHGGGMDLIFPHHECEIAQSVASNG-HQAVRYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT++E + K +++ IR +L HYR DF+ + L+ ++ LS+ + Sbjct: 292 ITLDEFFTGSHKLISQAYSPMTIRFFILQAHYRSTADFSDEALSASQKGLSRLFEAYERL 351 Query: 340 ------TSTSKGIIDPAVL--SALYNDLNTVSAIQALHKLARESTKNHD----------- 380 T+T+ + D L A+ +DLNT I L A+ HD Sbjct: 352 QRLSTGTTTTVEMKDWDSLCEEAMNDDLNTPIVIAHLFDAAKVINTVHDGKGSLSQNDID 411 Query: 381 -LLPIFNAS-AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 L +F+ + ILG+ E ++ AI+ ++ RL + K ++ +D IR +L Sbjct: 412 RLKAVFSTYLSDILGLKTEQGDSKYMESYRRAIDLILNLRLEAKQNKNWALSDKIRDELA 471 Query: 437 SKGFILEDYK 446 S GF+++D K Sbjct: 472 SYGFVVKDTK 481 >gi|189501179|ref|YP_001960649.1| cysteinyl-tRNA synthetase [Chlorobium phaeobacteroides BS1] gi|189496620|gb|ACE05168.1| cysteinyl-tRNA synthetase [Chlorobium phaeobacteroides BS1] Length = 484 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 172/492 (34%), Positives = 241/492 (48%), Gaps = 69/492 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R+ EF + +YVCGPTVY AH+G+A+ + FDV + LR+ Sbjct: 3 LHIYNSLSRQKEEFIPLHEKIASVYVCGPTVYGHAHLGHAKSYVSFDVAVKWLRHI--GY 60 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VTY++NITD+ +DKI +AR E P+ I T+ + D RL Sbjct: 61 SVTYIQNITDVGHLTDDADEGEDKIARQARLEKTD-PME-----IAQYYTRSYYDDMDRL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-Q 173 P P AT HIP+ I LI+ +I GHAYE N + F SS P+YG S R E Q Sbjct: 115 GVDRPNIAPTATGHIPEQIALIEKLIAKGHAYEVNGNVYFSVSSFPDYGKLSGRTDQEAQ 174 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 G RV + K++PADF LWK++ W SPW G PGWH ECSAM+ YLG+ D Sbjct: 175 HSGVRVESRSEKRHPADFALWKKADSGHIMKWNSPWSTGYPGWHTECSAMAMKYLGETID 234 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG++ FPHHE EIAQS A + W+HN + + G KM KS N + + +L Sbjct: 235 IHGGGMENKFPHHECEIAQSEAATD-KPYVRYWMHNNMVTVNGTKMGKSLKNSVNLKDLF 293 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKG 345 T P VIR +L +HYR +DF+ + + L K +T + Sbjct: 294 TTV-------PPIVIRFFILQSHYRSSLDFSETAIRASRTGLEKLQETWHALLAATPGSE 346 Query: 346 IIDPA-----VLSALYNDLNTVSAIQALHKLAR-----------------ESTKN----- 378 +D A A+ +D NT AI L LA+ S +N Sbjct: 347 KLDTAPFEKRFADAMNDDFNTPVAISVLFDLAKAVNTALNSGQGLSEDSLNSCRNIFAAC 406 Query: 379 -HDLLPIFNASAHILGIE--VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 D+L I +A+ G + KE L+ +SI ++ Q R + + F+ +D IR +L Sbjct: 407 GRDILGIIDAADTGKGGDKTAGKEVLDNVVSILLDLRKQAR----ENRDFALSDLIRDRL 462 Query: 436 ESKGFILEDYKN 447 G L+D ++ Sbjct: 463 ADSGVTLKDTRD 474 >gi|296166635|ref|ZP_06849062.1| cysteine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898007|gb|EFG77586.1| cysteine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 469 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 244/475 (51%), Gaps = 50/475 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L Sbjct: 4 RARLRLHDTAAGAVRDFVPLREGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWL---M 60 Query: 62 GEKC-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C V ++RN+TDIDDKI+ +A + + + F L L P+ Sbjct: 61 ARGCDVAFIRNVTDIDDKILNKA------AAADRPWWEWAATYERAFSAAYDALDVLPPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI QM+ L++ +I GHAY A ++ FD S P YG S KID+ G V Sbjct: 115 AEPRATGHITQMVELMERLIETGHAYPAGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGVA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+DL Sbjct: 175 TC--KRDQRDFTLWKAAKPGEPSWPTPWGRGRPGWHLECSAMARTYLGPEFDIHCGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I LL+ R Sbjct: 233 VFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPALLQ------R 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQ------TSTSKGIIDPAV 351 PA +R + HYR ++F+ +Q +A + + ++ G P Sbjct: 285 VRPAE-LRYYLGSAHYRSMLEFSDNALQDAVKAYVGVEEFLHRVRVRVGGVEPGEWTPRF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTK-----NHD-LLPIFNASAHILGIEVC-------- 397 AL +DL +A+ +H E + +HD L A ++GI C Sbjct: 344 AEALDDDLAVPAALAEVHHARAEGNRALDSGDHDGALQHARAIRAMMGILGCDPLDERWE 403 Query: 398 -KEHLNKNISIAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++ + ++ A+E LV+ L + + ++ AD IR +L+ G + D + Sbjct: 404 TRDETSAALA-AVEVLVRAELENREKAREQRNWALADEIRDRLKIAGIEVTDTAD 457 >gi|229136936|ref|ZP_04265563.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST26] gi|228646474|gb|EEL02681.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST26] Length = 420 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 159/445 (35%), Positives = 231/445 (51%), Gaps = 59/445 (13%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFI 286 G DIH GG DL FPHHENEIAQS KT A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFARYWMHNGYININNEKMSKSLGNFI 230 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK 336 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 231 LVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLRSTNNGLERIKTAYGNLKH 283 Query: 337 WPQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDL 381 ++ST K + D A A+ +D NT +AI L+ +A + + H Sbjct: 284 RMESSTDLTDHDEKWLADLKKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTS 343 Query: 382 LPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR Sbjct: 344 TVVIQAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDD 400 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L+ + ILED + TRWK+ Sbjct: 401 LKDRNIILED------TAQGTRWKR 419 >gi|269217459|ref|ZP_06161313.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269213080|gb|EEZ79420.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 501 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 243/482 (50%), Gaps = 62/482 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +KIY++ + +F+ ++P +Y+CG TV HIG+ R + FDVL R LR + Sbjct: 29 SLKIYDSAAHSLRDFEPLEPGRAGIYLCGATVQGAPHIGHMRSALAFDVLARWLRRSGYD 88 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +RN+TDIDDKI+ + S + ++F + L L PT++P Sbjct: 89 --VRMIRNVTDIDDKILRK------SAEAGRPWWEWAYRFEREFSQAYRTLGVLPPTYEP 140 Query: 124 RATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT HI I LIQ I+ GHAY + + FD +S+P+YGS +R+ + + E Sbjct: 141 RATGHIADQIELIQAILDAGHAYVGDPGNVYFDVASLPDYGSLTRQSLANMTVDESDVEP 200 Query: 183 YHKKNPADFILWKRSTPMEPGWESPW---GRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K+NP DF LWK P EP + GRGRPGWHIECSAM+ YLG+ FDIHGGG+D Sbjct: 201 -DKRNPHDFALWKAPKPGEPATAAWAAPWGRGRPGWHIECSAMAGRYLGETFDIHGGGID 259 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENE AQS A R A W+HN ++ +EG KMSKS GN +T+ + Sbjct: 260 LRFPHHENEQAQSHAAGR--GFARYWMHNAWVTIEGEKMSKSLGNSLTVEAV-------A 310 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVL- 352 R P ++R A+ HYR + ++ L EA+ + + S G+ + A L Sbjct: 311 REVPPVILRFALGTVHYRSTVAYSPATLAEAQAVWDRLAGFVARAAESEEIGLDEVASLG 370 Query: 353 ---------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------HI 391 +A+ +DLN A+ A+H+ TK + L +++ I Sbjct: 371 PDRLPAEFTAAMDDDLNVSGALAAVHEAV---TKGNTALSERDSAGVRRAQLEVRSMLDI 427 Query: 392 LGIE---------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 LG++ + + K + + +++ R K +++AD +R L + G ++ Sbjct: 428 LGLDPLSPQWRSGAGSDAVGKALDALVADMLERRAQARAAKDWATADAVRDSLSAAGVVV 487 Query: 443 ED 444 ED Sbjct: 488 ED 489 >gi|229153868|ref|ZP_04281998.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 4342] gi|228629549|gb|EEK86246.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 4342] Length = 420 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 230/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 338 PQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST K + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTNHNEKWLADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|300775102|ref|ZP_07084965.1| cysteine--tRNA ligase [Chryseobacterium gleum ATCC 35910] gi|300506917|gb|EFK38052.1| cysteine--tRNA ligase [Chryseobacterium gleum ATCC 35910] Length = 488 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 249/490 (50%), Gaps = 56/490 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++KIYN+L + F+ I N+ MYVCGPTVY H+GN R + FD +YR L + G Sbjct: 2 QLKIYNSLTAEKEIFKPILEGNVGMYVCGPTVYSNVHLGNVRTFLSFDFIYRTLMHL-GY 60 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRNITD +D+ +++ R E P+ I K T F K Sbjct: 61 K-VRYVRNITDAGHLTDDGNVDNDRFVKQTRLEKLE-PME-----IVQKYTVDFHKVLDM 113 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRRK 169 L P +P AT HI + I L Q +I G AYE+N + FD NYG S+R Sbjct: 114 FNLLPPNIEPTATGHIVEQIELTQKLIERGFAYESNGSVYFDVLEYNKRGLNYGELSKRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 I+E TR + + KKNP DF LWK+++P W SPWG G PGWH+EC+AMS+ YL Sbjct: 174 IEELFANTRDLDGQGEKKNPQDFALWKKASPAHIMRWNSPWGEGFPGWHLECTAMSTKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 G+ FDIHGGG+DL FPHHE EIAQ C D N W+H L + ++MSKS GN+I Sbjct: 234 GETFDIHGGGMDLKFPHHECEIAQGKACND--AAPVNYWMHANMLTMNSQRMSKSTGNYI 291 Query: 287 TINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ----------RLTEA-EILL 334 +L+ F + + ++R L HYR +D + RL EA ++L Sbjct: 292 LPMQLVTGDNDFFEKPFHPSIVRFCFLQAHYRSVLDISNDAMIASEKGFIRLMEAVKVLN 351 Query: 335 SKWPQTSTSKGI----IDPAVLSALYNDLNT-------VSAIQALHKL--ARESTKNHDL 381 S P + G AL +D N+ A++ + L +E+ DL Sbjct: 352 SITPDDTKQSGFNLQEWKNKAYDALTDDFNSPILIAHLFEAVKYIFALNDGKETISTADL 411 Query: 382 LPI---FNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 + NA +LG++ +E+ N+ + ++ L++ R K K F +D IR +L + Sbjct: 412 EDLKTTLNAFIFDVLGLQTVEENNNEKLDQTLKVLIELRNQARKSKNFELSDQIRDKLLA 471 Query: 438 KGFILEDYKN 447 +G L+D ++ Sbjct: 472 EGIELKDGRD 481 >gi|157167844|ref|XP_001662428.1| cysteinyl-tRNA synthetase [Aedes aegypti] gi|108871286|gb|EAT35511.1| cysteinyl-tRNA synthetase [Aedes aegypti] Length = 526 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 237/461 (51%), Gaps = 58/461 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 I+IY+ R+ Q P+ I Y CGPTVYD AHIG+A + D+L R+L+ ++G Sbjct: 22 IRIYSCRFREKVPLQLPSPARITSFYTCGPTVYDSAHIGHASCYVRLDILQRILKDHFGL 81 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + VT + NITDIDDKII RA + + + I Q+F D RL P + Sbjct: 82 RLVTAM-NITDIDDKIIRRAAE------VGKPWTDIARHYEQEFWTDLQRLNVRPPDIKL 134 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R T+HIP+++ I+ +I +AY++++ + F+T++ P YG ++Q PE Sbjct: 135 RVTDHIPRIVAFIEQLIAKNYAYKSSDGSVYFETANYPQYGKLQNIPTEQQSS----PES 190 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+ ADF LWK + P EP W SP+G GRPGWHIECS +++ G+ D H GGLDL F Sbjct: 191 --KKSAADFALWKAAKPGEPSWPSPFGLGRPGWHIECSTLATQIFGRQLDFHAGGLDLRF 248 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGR 300 PHHENE AQSCC ++ + WIH G L+LEG+ KMSKS N ++I EL+ Sbjct: 249 PHHENEEAQSCCYHGVDDWVHYWIHTGQLHLEGQTHKMSKSLKNTVSIGELMG------- 301 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDPA 350 + A R+ L++HYR I+F +T A +L K + + G+ID Sbjct: 302 KYSADEFRMLCLLSHYRSVIEFGDDSMTVATNVLKKFRSFFGDCRAYVEGVKPAGMIDSG 361 Query: 351 VLSA------------LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK 398 L L ND NT S + +L LA ST N + + A I+ E Sbjct: 362 ALHGKVQEVDEKIEEFLRNDFNTASVVTSLGDLA--STVNKSINQGNSGDAAIVASE--- 416 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + A+ ++ + LL + +F D +RK G Sbjct: 417 ----SGVVQAMMNYIRGKFTLLGLLEF---DEVRKTSPGSG 450 >gi|213965076|ref|ZP_03393274.1| cysteinyl-tRNA synthetase [Corynebacterium amycolatum SK46] gi|213952190|gb|EEB63574.1| cysteinyl-tRNA synthetase [Corynebacterium amycolatum SK46] Length = 471 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 248/477 (51%), Gaps = 60/477 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +I++T R++ +F+ + + +Y+CG T HIG+ R + FD+L R L + Y Sbjct: 7 FQIFDTATRQLKDFEPLREGHASIYLCGATPQAQPHIGHVRSGVAFDILRRWLIAKGY-- 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN+TDIDDKI+ +A EH P + +S + ++F +L L P+ + Sbjct: 65 --DVVFVRNVTDIDDKILNKA-AEH-GRPWWEWVS----RFEREFTWAYNQLGVLPPSVE 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-----NYGSFSRRKIDEQKMG- 176 PRAT H+ QM+ +Q ++ +G AY + + FD + +YGS S ++DE + G Sbjct: 117 PRATGHVTQMVEYMQRLMDNGFAYAVDGSVYFDVDAWSKAEGSDYGSLSGNRVDEMEQGE 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 T P K+ DF LWK + P EP W +PWG GRPGWH+ECSAM+++YLG FDIH G Sbjct: 177 TNTP---GKRGAHDFALWKAAKPGEPSWPTPWGNGRPGWHLECSAMATYYLGSEFDIHCG 233 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 GLDL FPHHENEIAQS A + A W+HN ++ + G KMSKS GN +++ +L + Sbjct: 234 GLDLQFPHHENEIAQSHAAG--DGFARYWMHNHWVTMAGEKMSKSLGNVLSVPHILTMVR 291 Query: 297 FGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI---LLSKWPQTSTSK------GI 346 PV +R + HYR ++++ + L EA + + + + K G Sbjct: 292 --------PVELRYYLGSAHYRSVLEYSEEALQEAAVGYRRIEAFMHRAVDKLGDIEIGE 343 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIEVC 397 PA +AL +DL A+ +H R + TK ++ A A +LG + Sbjct: 344 WTPAFEAALDDDLAVPRALAEIHNAVRGGNQALADGDETKAKEIAGAVRAMAAVLGFDPL 403 Query: 398 KEHLNKN----------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + + + +E ++ER K +++AD +R +L+ G + D Sbjct: 404 NEQWATSDSGSDAAMHALGVLVEHQLEERTRARAEKDWATADAVRDRLKEAGIEVTD 460 >gi|33242297|ref|NP_877238.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae TW-183] gi|33236808|gb|AAP98895.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae TW-183] Length = 474 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 168/482 (34%), Positives = 245/482 (50%), Gaps = 62/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + YNT +K E + + +R+Y CGPTVYD+AHIGN R + D+L R L ++ Sbjct: 9 LYFYNTASQK-KELFFPNHTPVRLYTCGPTVYDYAHIGNFRTYVFEDILKRTLVFF--GY 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD++DK I A ++ +IP+ + T T+ F +D L P Sbjct: 66 SVTHVMNITDVEDKTIAGASKK--NIPLQE----YTQPYTEAFFEDLDTLNIARADFYPH 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEK 182 AT++IPQMI I ++ G AY + + F + PNYG S + + +R+ ++ Sbjct: 120 ATHYIPQMIQAITKLLEQGIAYIGQDASVYFSLNRFPNYGKLSHLDLSSLRCCSRISADE 179 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 Y K+NP+DF+LWK P G WESP+G+GRPGWH+ECS M+ LG DIH GG+D Sbjct: 180 YDKENPSDFVLWKAYNPERDGVIYWESPFGKGRPGWHLECSIMAMELLGDSLDIHAGGVD 239 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS + A W+H+ L ++G+KMSKS GNF+T+ +LL ++F G Sbjct: 240 NIFPHHENEIAQSEALSG-KPFARYWLHSEHLLIDGKKMSKSLGNFLTLRDLLH-QEFTG 297 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL------------------SKWPQTS 341 + +R +L +HYR ++FT + L L S P+T Sbjct: 298 QE-----VRYMLLQSHYRTQLNFTEEALLACRHALRRLKDFVSRLEGVDLPGESPLPRTL 352 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAH 390 S A AL NDLN + +L E D +L Sbjct: 353 DSSSQFIEAFSRALANDLNVSTGFASLFDFVHEINTLIDQGHFSKADSLYILDTLKKVDT 412 Query: 391 ILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ VC I + +LV ER K K ++ AD +R ++ + GF++ED Sbjct: 413 VLGVLPLTTSVC-------IPETVMQLVAEREEARKTKNWAMADTLRDEILAAGFLVEDS 465 Query: 446 KN 447 K+ Sbjct: 466 KS 467 >gi|15618841|ref|NP_225127.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae CWL029] gi|15836465|ref|NP_300989.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae J138] gi|16752101|ref|NP_445468.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae AR39] gi|6831686|sp|Q9Z6X4|SYC_CHLPN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|4377255|gb|AAD19070.1| Cysteinyl tRNA Synthetase [Chlamydophila pneumoniae CWL029] gi|7189843|gb|AAF38714.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae AR39] gi|8979306|dbj|BAA99140.1| cysteinyl tRNA synthetase [Chlamydophila pneumoniae J138] Length = 474 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 168/482 (34%), Positives = 245/482 (50%), Gaps = 62/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + YNT +K E + + +R+Y CGPTVYD+AHIGN R + D+L R L ++ Sbjct: 9 LYFYNTASQK-KELFFPNHTPVRLYTCGPTVYDYAHIGNFRTYVFEDILKRTLVFF--GY 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD++DK I A ++ +IP+ + T T+ F +D L P Sbjct: 66 SVTHVMNITDVEDKTIAGASKK--NIPLQE----YTQPYTEAFFEDLDTLNIARADFYPH 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEK 182 AT++IPQMI I ++ G AY + + F + PNYG S + + +R+ ++ Sbjct: 120 ATHYIPQMIQAITKLLEQGIAYIGQDASVYFSLNRFPNYGKLSHLDLSSLRCCSRISADE 179 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 Y K+NP+DF+LWK P G WESP+G+GRPGWH+ECS M+ LG DIH GG+D Sbjct: 180 YDKENPSDFVLWKAYNPERDGVIYWESPFGKGRPGWHLECSIMAMELLGDSLDIHAGGVD 239 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS + A W+H+ L ++G+KMSKS GNF+T+ +LL ++F G Sbjct: 240 NIFPHHENEIAQSEALSG-KPFARYWLHSEHLLIDGKKMSKSLGNFLTLRDLLH-QEFTG 297 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL------------------SKWPQTS 341 + +R +L +HYR ++FT + L L S P+T Sbjct: 298 QE-----VRYMLLQSHYRTQLNFTEEALLACRHALRRLKDFVSRLEGVDLPGESPLPRTL 352 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAH 390 S A AL NDLN + +L E D +L Sbjct: 353 DSSSQFIEAFSRALANDLNVSTGFASLFDFVHEINTLIDQGHFSKADSLYILDTLKKVDT 412 Query: 391 ILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ VC I + +LV ER K K ++ AD +R ++ + GF++ED Sbjct: 413 VLGVLPLTTSVC-------IPETVMQLVAEREEARKTKNWAMADTLRDEILAAGFLVEDS 465 Query: 446 KN 447 K+ Sbjct: 466 KS 467 >gi|21228013|ref|NP_633935.1| cysteinyl-tRNA synthetase [Methanosarcina mazei Go1] gi|24418695|sp|Q8PVQ1|SYC_METMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|20906443|gb|AAM31607.1| Cysteinyl-tRNA synthetase [Methanosarcina mazei Go1] Length = 473 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 171/479 (35%), Positives = 246/479 (51%), Gaps = 55/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R F+ + + +Y CGPTVY+ HIGN R ++ D + R L+Y G K Sbjct: 2 LQVYNTLTRNKETFKPLKEGEVSIYACGPTVYNMPHIGNYRTFLLADTVVRTLQYL-GYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDK I ++ S+ T K + +F K L + PR Sbjct: 61 -VKLVMNITDIDDKTIRDSKAAGMSL------KDFTDKYSAEFFKGLDMLNIKRASAYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT ++ MI L Q +I G AYE + + S P+YG S+ D ++G V ++Y Sbjct: 114 ATENVDGMIELAQKLIEKGLAYEKGGSVYYRISGFPDYGKLSKLDFDSIRIGASVDVDEY 173 Query: 184 HKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K NP DF L K S P E +ESPWG+ RPGWHIECS M+ + G D+H GG+D Sbjct: 174 DKDNPRDFALLKASAPEEIERSIYYESPWGKIRPGWHIECSVMAMNSFGPTLDVHIGGVD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A I + WIH L +EG KMSKS GN T+ E++E +GG Sbjct: 234 LIFPHHENEIAQSEGATGIPFVRH-WIHGEHLIVEGEKMSKSKGNVFTLPEIVEM--YGG 290 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KGIID---PAV 351 V+R L HYR+ +D++ A+ K +T + K + D P Sbjct: 291 E-----VVRFMFLSVHYRKKLDYSETFAENAKNNYLKLKETLDNLEFALKNVEDEPGPGD 345 Query: 352 L--------------SALYNDLNTVSAIQALHKLAR------ESTKNHDLL----PIFNA 387 L AL +D NT AI +L+R E+ KN +L ++ Sbjct: 346 LETLKTLPELENRFREALEDDFNTPKAITVFRELSRTANVYLETGKNMQVLEEIHALYKR 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + LGI + + + + +LV+ER K+K + ++D IR++++S G+I++D K Sbjct: 406 FSDTLGI--FAKAGGEEVPGEVVRLVEEREEARKIKDWKTSDAIREKIKSLGYIVQDTK 462 >gi|260772517|ref|ZP_05881433.1| cysteinyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14] gi|260611656|gb|EEX36859.1| cysteinyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14] Length = 397 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 154/417 (36%), Positives = 223/417 (53%), Gaps = 45/417 (10%) Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 +RNITDIDDKII+RA + S +T + Q+ D L L P +PRAT + Sbjct: 1 MRNITDIDDKIIKRASENQESC------DSLTERLIQEMYTDFDALNILRPDVEPRATAY 54 Query: 129 IPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187 I ++I L++ +I G AY A+N +++F+ S YG S++ + + + G RV + K++ Sbjct: 55 IEEIIALVERLIDRGFAYVADNGDVMFEVSKFKEYGRLSKQDLTQLQAGARVDIETAKRS 114 Query: 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S LG FDIHGGG DL FPHHEN Sbjct: 115 PLDFVLWKMSKPGEPTWQSPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFPHHEN 174 Query: 248 EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVI 307 EIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + + Sbjct: 175 EIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDVLQ-------HYDPETV 226 Query: 308 RLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV---------LSALYND 358 R ++ HYR ++++ + LT+A L + + A SA+ +D Sbjct: 227 RYFLMSGHYRSQLNYSEENLTQARASLERLYTALRGLDMTVAAAGGEEYVSRFTSAMNDD 286 Query: 359 LNTVSAIQALHKLAREST--KNHDLL------PIFNASAHILGIEVCKEHLNKNISIAIE 410 NT A L +ARE K D+L + A ++GI + S+A + Sbjct: 287 FNTPEAYSVLFDMAREVNRLKTEDMLQASALGALMRELADVIGILYQEPERFLQSSVAND 346 Query: 411 KLVQERLILLKM-------KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +E L+K+ K +++AD R +L G ILED G T W++K Sbjct: 347 DQAEEIEALIKLRNDSRANKDWANADLARHKLTEMGIILED------GPNGTTWRRK 397 >gi|325106932|ref|YP_004268000.1| cysteinyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305] gi|324967200|gb|ADY57978.1| cysteinyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305] Length = 505 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 174/496 (35%), Positives = 244/496 (49%), Gaps = 69/496 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+ YNTL ++ EFQ ++P +RMY CGPTVYDFAHIGN R + D++ R L E Sbjct: 3 IQFYNTLNNRLEEFQPLEPGTVRMYSCGPTVYDFAHIGNFRSFLFADLIRRFLEVMGNE- 61 Query: 65 CVTYVRNITDI-------------DDKIIERARQ---------------EHPSIPINDAI 96 V +V NITD+ +DK+ A++ E+P P Sbjct: 62 -VIHVMNITDVGHMTDDHLADGGGEDKMEAAAKRLKEDKKSGKVPEGAIENPDDPYQ--- 117 Query: 97 SIITSKNTQQFVKDTTRL----ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNE 151 + TQ F++D +L A P P AT HIP+M +I+ +I HAY + Sbjct: 118 --VAEYFTQAFLEDARKLGMKIAFEYPERIPHATKHIPEMQQMIEQLIAKDHAYVGPDGA 175 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGT--RVPE--KYHKKNPADFILWKRSTPMEPGWESP 207 + + S P YGS S +D+ + G+ RV E + +K++PADF+LWK W+SP Sbjct: 176 VYYSVESFPEYGSLSGNTLDQLREGSGGRVQEADQVNKRHPADFLLWKPDQSHVMKWDSP 235 Query: 208 WGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 WG+G PGWHIECS M+ LG+ DIH GG DLIFPHHE EIAQS A A W+ Sbjct: 236 WGKGYPGWHIECSVMARLLLGRDTIDIHTGGEDLIFPHHECEIAQSRGASGEGSFARFWM 295 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H FL +EG KMSKS GNF T+ ++L K G PA V+R +L +HYR ++FT + Sbjct: 296 HARFLMVEGEKMSKSKGNFYTVRDVLSGKVTGRDVHPA-VLRYELLKSHYRSNMNFTEKG 354 Query: 327 LTEAEILLSKW--------PQTSTSKGIIDPA------VLSALYNDLNTVSAIQALHK-L 371 L ++ + K +T ID + L+AL +DLN A+ L + Sbjct: 355 LKDSAGAVRKLNEFNQQLQAKTGGKVAEIDNSHPVLAEFLAALSDDLNIAGALGVLFPWM 414 Query: 372 ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS-------IAIEKLVQERLILLKMKK 424 + + L + IL + EH S + IE L + K Sbjct: 415 HNNNDAPEEALAVLQTINRILDV-APMEHEQAEESGGAAEGGLDIEALCRGIDEARASKD 473 Query: 425 FSSADYIRKQLESKGF 440 + AD +R QL+ G+ Sbjct: 474 WGKADELRNQLQDAGY 489 >gi|240172166|ref|ZP_04750825.1| cysteinyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478] Length = 468 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 237/475 (49%), Gaps = 50/475 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RY 59 + ++++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L R Sbjct: 4 RARLRLHDTAAGAVRDFVPLRDGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLIARG 63 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + V ++RN+TDIDDKI+ +A + + F L + P Sbjct: 64 F----DVAFIRNVTDIDDKILNKA------AAAGRPWWEWAATYERAFTAAYDALDVMPP 113 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT HI QMI L++ +I GHAY + ++ FD S PNYG S KID+ G V Sbjct: 114 SAEPRATGHITQMIELMERLIETGHAYTGDGDVYFDVLSYPNYGQLSGHKIDDVHQGEGV 173 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+D Sbjct: 174 AAG--KRDQRDFTLWKGEKPGEPSWPTPWGRGRPGWHLECSAMARTYLGSEFDIHCGGMD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I +L+ + Sbjct: 232 LIFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPAMLQRVR--- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQTSTSK------GIIDPA 350 P +R + HYR ++F+ +Q A + + + S+ G P Sbjct: 287 ----PPELRYYLGSAHYRSMLEFSDTALQDAVNAYVGVEDFLHRVRSRVGAVLPGEWTPR 342 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA--SA-------HILGIEVCKEHL 401 AL +DL+ A+ +H E + D A SA ILG + E Sbjct: 343 FAEALDDDLSVPIALAEIHHARAEGNRALDAGDHEGALRSAGSIRTMMGILGCDPLDERW 402 Query: 402 NKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + ++ R + + ++ AD IR +L++ G + D + Sbjct: 403 ESRDETTAALAAVDVLVHAELENREKAREQRNWALADQIRDRLKNAGIEVTDTAD 457 >gi|269929418|ref|YP_003321739.1| cysteinyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] gi|269788775|gb|ACZ40917.1| cysteinyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] Length = 399 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/415 (35%), Positives = 221/415 (53%), Gaps = 43/415 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L ++ EF ++ +RMYVCG T YD H+G+A + FDV+ R ++ G + Sbjct: 1 MRLYNSLTQRKEEFTPLNGKTVRMYVCGITPYDTTHMGHAMTYLTFDVINRYCQHL-GWR 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TDIDD I+ +AR+ + + + + +QF +D + L P+ PR Sbjct: 60 -VKYVQNVTDIDDDILRKARE------VGEPWDRLGDRYIRQFQEDLNSINILPPSVYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ-----KMGTRV 179 A+ IP +I +I ++ G AY + + F +S P+YG R +E + G Sbjct: 113 ASEEIPTIIEMISTLVERGMAYVRDGNVYFRVASDPDYGHLCRCSTEEMIALSAERGAD- 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P K+NP DFILW+ P EP W+SPWG GRPGWHIECSAM+ YLG DIHGGG D Sbjct: 172 PNDPRKENPLDFILWQAQQPGEPAWDSPWGPGRPGWHIECSAMAYRYLGPQIDIHGGGGD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LI+PHHE+EIAQ+ + E A W+H + +G KMSKS GN + + ++L Sbjct: 232 LIYPHHESEIAQTEAYTQKEPFARFWVHVAMVRYQGEKMSKSLGNLVLVRDVL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-------- 351 R A +RL +L HYRE ++ E L + G PA+ Sbjct: 285 RDHTADALRLYLLSNHYRESFEYQDDGPARFEPLADLLRRAVRLPGGSGPALDVADTHRA 344 Query: 352 -LSALYNDLNTVSAIQALHKL----------ARESTKNHDLLPIFNASAHILGIE 395 A+ +DL+T + IQ L ++ R+ T+ +LL +A ILG++ Sbjct: 345 FTDAIGDDLDTPTGIQVLREMGEQVISAAEAGRDVTEARELL---RQAAGILGLQ 396 >gi|229170941|ref|ZP_04298542.1| Cysteinyl-tRNA synthetase [Bacillus cereus MM3] gi|228612481|gb|EEK69702.1| Cysteinyl-tRNA synthetase [Bacillus cereus MM3] Length = 420 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 230/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEDLLQSTNNGLERIKTAYGNLKHR 284 Query: 338 PQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST K + + A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLAELEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ KE L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAKEEL---LDEEIEVLIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|224372980|ref|YP_002607352.1| cysteinyl-tRNA synthetase [Nautilia profundicola AmH] gi|223589717|gb|ACM93453.1| cysteinyl-tRNA synthetase [Nautilia profundicola AmH] Length = 464 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 246/475 (51%), Gaps = 50/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY++ ++ +F+ I R+YVCGPTVYD AH+G+AR I FD+L R L G K Sbjct: 1 MTIYDSHLKQKVDFKPIKEGEARIYVCGPTVYDDAHLGHARSSISFDLLRRTLE-KLGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII + Q S + IT +++D L +P+ Sbjct: 60 -VTFVKNFTDIDDKIINKMNQTGKS------LKEITEYYIDSYLRDMGALNVKRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M LIQN++ G+AY+ N +I FD S Y S + D++ + RV + Sbjct: 113 ATESLEAMFDLIQNLLDKGYAYQLPNGDIYFDVSKDEEYCKLSNKCQDDEVV-HRVDTE- 170 Query: 184 HKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLG----KVFDIHGGGL 238 K+NPADF LWK + ++SP+G+GRPGWHIECSAM ++ DIHGGG Sbjct: 171 GKRNPADFALWKACKGEDDVCFDSPFGKGRPGWHIECSAMIKKHIAYNGEYEIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ CA E A W+HNGF+ + G KMSKS GN I + L Sbjct: 231 DLFFPHHENEEAQTHCA-YGEHLAKYWMHNGFVQINGEKMSKSLGNSFFIKDAL------ 283 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDP 349 + +P V+R ++ THYR P++F+ + L ++ L K + + Sbjct: 284 -KHYPGEVLRFYLMSTHYRAPLNFSEEDLIASKKRLDKLYRLKKRIYGLAKKQKDSEFEA 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGI---- 394 +L A+ +DLN A+ + + +E+ + D +L +LGI Sbjct: 343 KLLEAMSDDLNISKALAVVDEFVKEANEALDKNPKDKVLKQKILSNIEFINELLGIGGSD 402 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E + +++ I +L+++R K K F +AD IR +L S G ++D N Sbjct: 403 AYEYFQAGIDEETKAKINELIEKRTQAKKEKDFETADKIRDELTSMGIQIQDTPN 457 >gi|257068447|ref|YP_003154702.1| cysteinyl-tRNA synthetase [Brachybacterium faecium DSM 4810] gi|256559265|gb|ACU85112.1| cysteinyl-tRNA synthetase [Brachybacterium faecium DSM 4810] Length = 481 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 164/500 (32%), Positives = 247/500 (49%), Gaps = 74/500 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++T R F + P + +YVCGPT H+G+ R + FDVL R L E Sbjct: 3 LHLHDTATRTTAPFTPVQPGAVSLYVCGPTTQGDPHLGHLRTFLAFDVLVRWLERSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ + S + A + + ++F R+ PT++PR Sbjct: 62 -VAHVRNVTDIDDKILVK------SAEADAAWWAWSLRFEREFQDTLDRIGNRRPTYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKI-DEQKMGTRVPEK 182 AT H+P+MI L++ +I GHAY + + FD +S P YG+ +R+ + D Q G + + Sbjct: 115 ATGHVPEMIALMERLIERGHAYADGAGSVYFDVASHPGYGALTRQSLEDMQDAGEEM--E 172 Query: 183 YHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK + P EP W++P+GRGRPGWH+ECSAM+ YLG+ FDIH GGLD Sbjct: 173 PGKRDRHDFALWKAAKPTEPETASWDTPFGRGRPGWHLECSAMARKYLGESFDIHAGGLD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENE AQS A A W+H+G + ++G KM KS NF+T L Sbjct: 233 LRFPHHENEQAQSHAAGY--GFAQRWMHSGMVTVDGMKMGKSLDNFVTAARALAEH---- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL--------------LSKWPQTSTSKG 345 PAP +RLA++ HYR +++ + EAE + L P + Sbjct: 287 ---PAPAVRLALVSGHYRATVEYNATAMREAETVWERFRATAARAAERLEGAPLAAAEAP 343 Query: 346 IID---PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---------------FNA 387 + D PA +A +D ++ +AL + RE + LL A Sbjct: 344 LADVELPAEFTAAMDD--DLAVPEALAVVHREQAALNTLLAAPGTAPSAEVTSSLGRLRA 401 Query: 388 SAHILGIEVCKEHLNKNISI------AIEKLVQERL----ILLKMKKFSSADYIRKQLES 437 +LG++ ++ + A++ L+ +L K ++ AD +R L + Sbjct: 402 MLDVLGLDPLGAQWGQDQGVSGAEHAALDALISSQLAAREAARAEKDWARADALRDALTA 461 Query: 438 KGFILEDYKNPDNGQRMTRW 457 G +ED GQ RW Sbjct: 462 AGIRIED------GQDGARW 475 >gi|228905887|ref|ZP_04069784.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis IBL 200] gi|228853702|gb|EEM98462.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis IBL 200] Length = 420 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 226/444 (50%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKDAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------Q 339 +++++ + + +IR ML HYR PI+F+ + L L + + Sbjct: 232 VHDII-------KQYNPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 340 TSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 +S + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLAELEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|255507398|ref|ZP_05383037.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis D(s)2923] gi|289525826|emb|CBJ15307.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis Sweden2] gi|296435406|gb|ADH17584.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis E/150] gi|296439123|gb|ADH21276.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis E/11023] Length = 497 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 174/482 (36%), Positives = 245/482 (50%), Gaps = 59/482 (12%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 25 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 80 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 81 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 134 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 135 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 194 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 195 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 254 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 255 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 312 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 313 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 367 Query: 354 A-----------LYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASA--------HI 391 A L NDLN S++ AL R+ S H + I S+ HI Sbjct: 368 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQIETDSSVFSKQDAQHI 427 Query: 392 LGIEVCKEHL-------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + + +I + LV++R K+K + AD +R ++ S+GF +ED Sbjct: 428 LALLRKIDQVLGVLPFSQPDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRGFAIED 487 Query: 445 YK 446 K Sbjct: 488 GK 489 >gi|215447914|ref|ZP_03434666.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T85] gi|289759738|ref|ZP_06519116.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T85] gi|289715302|gb|EFD79314.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T85] Length = 428 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/390 (37%), Positives = 214/390 (54%), Gaps = 32/390 (8%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRY 59 + ++++++T + +F + P ++ +Y+CG TV HIG+ R + FD+L R L R Sbjct: 4 RARLRLHDTAAGVVRDFVPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLLARG 63 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 Y V ++RN+TDI+DKI+ +A P + + + + F L L P Sbjct: 64 Y----DVAFIRNVTDIEDKILAKAAAA--GRPWWE----WAATHERAFTAAYDALDVLPP 113 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT HI QMI +I+ +I GHAY ++ FD S P YG S KID+ G V Sbjct: 114 SAEPRATGHITQMIEMIERLIQAGHAYTGGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGV 173 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+D Sbjct: 174 AAG--KRDQRDFTLWKGEKPGEPSWPTPWGRGRPGWHLECSAMARSYLGPEFDIHCGGMD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQS A + A W+HNG++ + G KMSKS GN +++ +L+ Sbjct: 232 LVFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSMPAMLQ------ 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKW-PQTSTSKGIIDPA----- 350 R PA +R + HYR ++F+ +Q +A + L + + T G + P Sbjct: 284 RVRPAE-LRYYLGSAHYRSMLEFSETAMQDAVKAYVGLEDFLHRVRTRVGAVCPGDPTPR 342 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD 380 AL +DL+ A+ +H + E + D Sbjct: 343 FAEALDDDLSVPIALAEIHHVRAEGNRALD 372 >gi|328949107|ref|YP_004366444.1| cysteinyl-tRNA synthetase [Treponema succinifaciens DSM 2489] gi|328449431|gb|AEB15147.1| cysteinyl-tRNA synthetase [Treponema succinifaciens DSM 2489] Length = 510 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 169/516 (32%), Positives = 249/516 (48%), Gaps = 88/516 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ RKI EF I + Y CGPTVY++AHIGN R + D L R L + +K Sbjct: 3 LRLYNTMGRKIEEFVPIHEGFVGFYGCGPTVYNYAHIGNLRAYVFLDTLDRTLTFLGYDK 62 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 +V NITDI +DK+++ A++ H S+ + T F D RL Sbjct: 63 --KHVMNITDIGHLTGDADEGEDKMLKTAQERHQSVLE------VAKFYTDAFFNDIDRL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P +AT H+ MI LI+ I +GH Y + + +D ++ P+YG + +D+ K Sbjct: 115 NIIRPDVVCKATEHVQDMIELIKRIEANGHTYMSGGNLYYDVTTYPDYGKLANLNLDDLK 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 G R+ +K+NP DF+LW + E W+SPWGRG PGWHIECSAMS YLG+ F Sbjct: 175 AGARIEVDQNKRNPYDFVLWFTKSKFENQALTWDSPWGRGYPGWHIECSAMSMKYLGEHF 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL----------EGRKMSKS 281 DIH GG+D I HH NEIAQS A K N W+HN FL + + KMSKS Sbjct: 235 DIHTGGIDHIPIHHTNEIAQSEGATG-HKWVNYWLHNEFLVIAKDKKAAESGQAEKMSKS 293 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKW 337 +GNF+T+ L++ + + R +L HYR+ I F+ + A+ L+ + Sbjct: 294 HGNFLTLQSLID------KGYNPLDYRFFLLGGHYRKQIYFSWDAMDSAKNSRTALVQRV 347 Query: 338 PQTSTSKGIIDPAVLSALY---------------------------NDLNTVSAIQALHK 370 + + + G D S +Y NDL+T A+ + K Sbjct: 348 ARLAQNAGGADSLNYSKIYSKGEACKTENLSEKAKEYIEKFQAALENDLSTPVALSCIQK 407 Query: 371 LARE-STKNHDLLPIFNASAHILGIEVCK------------------EHLNKNISIAIEK 411 ++ S K + L + ++G+ + K +H + I+ Sbjct: 408 AVKDGSLKPEESLELVRRMDSVIGLNLVKSAADFLAEQEKEKKASVPDHSGDPEAQEIDA 467 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 LV ER+ K K F+ AD IR L S+G I+ D N Sbjct: 468 LVAERVEAKKAKNFARADEIRNMLSSRGIIITDTPN 503 >gi|166154124|ref|YP_001654242.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] gi|166154999|ref|YP_001653254.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335362|ref|ZP_07223606.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis L2tet1] gi|165930112|emb|CAP03595.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] gi|165930987|emb|CAP06549.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 497 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 243/485 (50%), Gaps = 65/485 (13%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 25 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 80 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 81 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 134 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 135 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 194 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 195 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSMSLLGQSLDIHAGGVDN 254 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 255 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 312 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 313 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 367 Query: 354 A-----------LYNDLNTVSAIQALHKLARESTKNHD---------------------L 381 A L NDLN S++ AL R+ + D + Sbjct: 368 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQTETDSSVFSKQDAQHI 427 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L + +LG+ + +I + LV++R K+K + AD +R ++ S+GF Sbjct: 428 LALLRKIDQVLGVLPFSQ---PDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRGFA 484 Query: 442 LEDYK 446 +ED K Sbjct: 485 IEDGK 489 >gi|255349180|ref|ZP_05381187.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis 70] gi|255503717|ref|ZP_05382107.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis 70s] Length = 500 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 174/482 (36%), Positives = 245/482 (50%), Gaps = 59/482 (12%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 28 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 83 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 84 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 137 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 138 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 197 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 198 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 257 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 258 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 315 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 316 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 370 Query: 354 A-----------LYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASA--------HI 391 A L NDLN S++ AL R+ S H + I S+ HI Sbjct: 371 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQIETDSSVFSKQDAQHI 430 Query: 392 LGIEVCKEHL-------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L + + + +I + LV++R K+K + AD +R ++ S+GF +ED Sbjct: 431 LALLRKIDQVLGVLPFSQPDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRGFAIED 490 Query: 445 YK 446 K Sbjct: 491 GK 492 >gi|256419903|ref|YP_003120556.1| cysteinyl-tRNA synthetase [Chitinophaga pinensis DSM 2588] gi|256034811|gb|ACU58355.1| cysteinyl-tRNA synthetase [Chitinophaga pinensis DSM 2588] Length = 499 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 179/504 (35%), Positives = 253/504 (50%), Gaps = 75/504 (14%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++KIYN+L R+ F ++ P ++ MYVCGPTV +H+G+ARP I FDV+YR L++ G Sbjct: 3 ELKIYNSLHRQKEVFTSLYPGHVGMYVCGPTVSGESHLGHARPYITFDVVYRYLQFL-GY 61 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRNITD +DKI +RA+ E P+ + K T F R Sbjct: 62 K-VRYVRNITDAGHFEEEGREAEDKIAKRAQLEKLE-PME-----LVQKYTNLFHWAFLR 114 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRKI 170 CL P+ +P AT HI + I +I+ I+ G+AYE+N + FD +YG S R + Sbjct: 115 FNCLEPSIEPTATGHIVEQIEMIKTIMEKGYAYESNGSVYFDVKKYAESHDYGILSGRVL 174 Query: 171 DE--QKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 ++ + + + K N DF LWK + P W SPWG G PGWHIECSAMSS YL Sbjct: 175 EDMLESSNRELDGQEEKINNVDFALWKNAPPEHIMRWPSPWGEGFPGWHIECSAMSSKYL 234 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 GK FDIHGGG+DL FPHHE EIAQS A E A W+HN + + GRKM K+ N I Sbjct: 235 GKQFDIHGGGMDLQFPHHECEIAQSEIAHG-ELMARYWMHNNMITINGRKMGKAYNNTIK 293 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK 336 + EL +++ IR +L THYR +DF+ +QRL A +L K Sbjct: 294 LTELFTGNHHLLEKAYSPMTIRFFILQTHYRSTLDFSNEALQAAEKGLQRLWAAFEVLQK 353 Query: 337 WPQTSTSKGI---IDPAVL-------SALYNDLNTVSAIQAL-----------------H 369 T+ ++ I +D V + +D NT + L H Sbjct: 354 LSYTADAQPINEELDKQVRQWCLECEEFISDDFNTAKVLANLFELSPVINSIKGGQVKMH 413 Query: 370 KLARES------TKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 +L+ E+ T + L+ I L + N + I+ L++ R K Sbjct: 414 ELSEETFQLLKKTWQNFLIDILGLQPETLATD------NSKLDGVIQLLMEMRKEAKGRK 467 Query: 424 KFSSADYIRKQLESKGFILEDYKN 447 ++++D IR QL + G L+D K+ Sbjct: 468 DYAASDKIRNQLLAVGIQLKDEKD 491 >gi|189347672|ref|YP_001944201.1| cysteinyl-tRNA synthetase [Chlorobium limicola DSM 245] gi|189341819|gb|ACD91222.1| cysteinyl-tRNA synthetase [Chlorobium limicola DSM 245] Length = 484 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 170/494 (34%), Positives = 241/494 (48%), Gaps = 75/494 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R F+ + P + MYVCGPTVY AH+G+A+ + FDV+ R LR G + Sbjct: 3 LQIYNSLSRSKETFEPVHPGVVGMYVCGPTVYGHAHLGHAKSYVSFDVVARWLRQS-GYR 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV+NITD+ +DKI +AR E P+ I T+ F D RL Sbjct: 62 -VRYVQNITDVGHLSDDADEGEDKIARQARLEKTD-PME-----IAQFYTRSFYDDMDRL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ- 173 P P AT H+P+ I LI+ ++ HAY N + F S P+YG S R E Sbjct: 115 GVERPNIAPTATGHVPEQIALIRQLVGSSHAYVVNGNVYFSVQSFPDYGKLSGRTDQEAL 174 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGK 229 + GTR+ + K++P+DF LWK++ E G WESPWG G PGWH+ECSAMS YLG+ Sbjct: 175 QSGTRIEVRNEKRHPSDFALWKKA---EEGHIMKWESPWGTGYPGWHVECSAMSMKYLGE 231 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIHGGG++ FPHH+ EIAQS A W+HN + + G KM KS N + + Sbjct: 232 TVDIHGGGMENKFPHHDCEIAQSEAATG-RPYVRYWMHNNMVTVGGIKMGKSLKNSVNLK 290 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTST 342 +L R VIR +L +HYR P+D++ + + L K +T Sbjct: 291 DLF-------RETDPMVIRFFILQSHYRSPLDYSEAAIRASSAGLEKLQDTRQRLQKTRP 343 Query: 343 SKGIIDPAVLS-----ALYNDLNTVSAIQALHKLARESTKNHD----------------- 380 G D + A+ +D NT AI L ++ D Sbjct: 344 GTGNFDSTAFTERFTAAMDDDFNTPLAISILFDFSKSVNSALDKQEGLSADSIAEAAAFL 403 Query: 381 ------LLPIFNASAHILG--IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 +L I +AS G E ++ L K ISI ++ ++ R K K F+ +D IR Sbjct: 404 DTFAGKVLGIVSASDEASGHASENSRQTLEKTISILLDMRIEAR----KNKDFALSDRIR 459 Query: 433 KQLESKGFILEDYK 446 +L G ++D + Sbjct: 460 DRLLEAGVEVKDTR 473 >gi|229015492|ref|ZP_04172490.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH1273] gi|229021701|ref|ZP_04178283.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH1272] gi|228739569|gb|EEL89983.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH1272] gi|228745779|gb|EEL95783.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH1273] Length = 420 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/445 (35%), Positives = 228/445 (51%), Gaps = 59/445 (13%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFI 286 G DIH GG DL FPHHENEIAQS KT A W+HNG++N++ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFARYWMHNGYINIDNEKMSKSLGNFI 230 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------- 338 +++++ + + +IR ML HYR PI+F+ + L L + Sbjct: 231 LVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKH 283 Query: 339 QTSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK----NHDL 381 + +S + D A A+ +D NT +AI L+ +A + + H Sbjct: 284 RMESSTDLTDHNEKWLAEMEKFQVAFEEAMDDDFNTANAITELYNVANHANQYLLEEHTS 343 Query: 382 LPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR Sbjct: 344 KVVIGAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDD 400 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L+ + ILED + TRWK+ Sbjct: 401 LKDRNIILED------TAQGTRWKR 419 >gi|110598118|ref|ZP_01386396.1| cysteinyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031] gi|110340250|gb|EAT58747.1| cysteinyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031] Length = 481 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 165/488 (33%), Positives = 245/488 (50%), Gaps = 67/488 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65 IYN+L R +F+ + P + +YVCGPTVY +H+G+A+ + FDV+ R LR+ C Sbjct: 5 IYNSLSRTKEQFEPLHPGFVSIYVCGPTVYGHSHLGHAKSYVSFDVVVRWLRH-----CG 59 Query: 66 --VTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V YV+NITD+ +DKI+++AR E P+ I T+ F +D R Sbjct: 60 YQVKYVQNITDVGHLTDDADEGEDKIMKQARLEKTD-PME-----IAQFYTRSFYEDMDR 113 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS-RRKIDE 172 L L P P AT HIP+ I LI+ ++ GHAYE N + F S P YG S R ++ Sbjct: 114 LGILRPNIAPAATAHIPEQIALIERLVETGHAYEVNGNVYFSVESFPGYGRLSGRTDMEA 173 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 Q+ G RV + K++ +DF LWK++ W SPWG G PGWH+ECSAMS YLG+ Sbjct: 174 QQSGNRVEVRSEKRHTSDFALWKKAEENHLMKWRSPWGTGYPGWHLECSAMSMKYLGETI 233 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG++ FPHHE EIAQ+ + W+HN + + G KM KS N + + EL Sbjct: 234 DIHGGGMENKFPHHECEIAQAESVTG-KPYVRFWMHNNMVTVNGIKMGKSLKNSVNLKEL 292 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKG- 345 T + VIR +L +HYR P+DF+ + ++ L K +T T+ G Sbjct: 293 FST-------FDPIVIRFFILQSHYRSPLDFSDVAIRASQTGLEKLHETYRRLMETNSGS 345 Query: 346 ---IIDPAVL---SALYNDLNTVSAIQALHKLAR-------------ESTKNHDLLPIFN 386 ++P + A+ +D NT A+ L A+ E+ + + Sbjct: 346 GMFAVEPYLDRFNDAMNDDFNTPIAVSVLFDCAKALNTALDRSEGVSETAREEAGKFLAM 405 Query: 387 ASAHILGI--------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 A +LGI + E K + + +++ R K K F+ +D +R +L Sbjct: 406 AGTEVLGILQPRGSSGDKQSEETGKALEGVMALILELRAEARKNKDFALSDKLRDRLLEA 465 Query: 439 GFILEDYK 446 G ++D K Sbjct: 466 GIEIKDTK 473 >gi|196232145|ref|ZP_03131000.1| cysteinyl-tRNA synthetase [Chthoniobacter flavus Ellin428] gi|196223867|gb|EDY18382.1| cysteinyl-tRNA synthetase [Chthoniobacter flavus Ellin428] Length = 466 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 248/478 (51%), Gaps = 58/478 (12%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYY 60 I+++NT R++ EF +DP+ ++MY CGPTVY+ AHIGN R + D+L R L R Y Sbjct: 3 IRLFNTYTRQLEEFTPLDPAGQQVKMYTCGPTVYNHAHIGNFRAYLFEDLLQRHLEARGY 62 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E+ V N+TD+DDK I +R+ ++ T+ F +D L Sbjct: 63 QVER----VMNLTDVDDKTIRNSRE------AGRRLADFTAIYKDAFFQDVDTLRIKRAQ 112 Query: 121 HQPRATN--HIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGT 177 H P AT +I +MI +IQ + G AY+A ++ + F S P+YG + +DE + Sbjct: 113 HFPAATEPRYIERMISMIQQLESQGIAYQAEDKSVYFRLSKFPDYGKLAHLNLDELRPSG 172 Query: 178 RVP-EKYHKKNPADFILWKR--STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 R+ ++Y K++ DF LWK + W+SPWGRGRPGWHIECSAM++ LG DIH Sbjct: 173 RIANDEYEKESIGDFALWKAWDEKDGDVAWDSPWGRGRPGWHIECSAMATALLGPEIDIH 232 Query: 235 GGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GG+D IFPHHE EIAQS CC + K W+H L ++G+KMSK GNF T+ +L+E Sbjct: 233 CGGVDNIFPHHEAEIAQSECCTGK--KFVRYWLHCAHLMVDGQKMSKKLGNFYTLRDLIE 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQ----------- 339 K F GR R A+L +YR P++FT+ L A L++ W Sbjct: 291 -KGFTGRE-----ARYALLTVNYRLPLNFTLPGLESARASLARIDEWVDRLTAHAAGASP 344 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES-----------TKNHDLLPIFNAS 388 T+T +AL DLN A+ L L RES + LL + Sbjct: 345 TATPLSDFTEKFFAALDEDLNISGALAPLFDLIRESNSALNRSELSPAEAAQLLADWRRI 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LG E + ++ +E+ Q R K++ +D +R ++ +KG++++D K Sbjct: 405 DSVLGFEREAAAIPADVLALVEQRQQAR----ADKEWKKSDELRDEILAKGWVVKDTK 458 >gi|89890596|ref|ZP_01202106.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium BBFL7] gi|89517511|gb|EAS20168.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium BBFL7] Length = 494 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 254/491 (51%), Gaps = 62/491 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+++YN+L + F++I+ + MYVCGPTVY H+GN R I FD++YR L++ G Sbjct: 7 QKLQLYNSLTGEKEIFKSINEGLVGMYVCGPTVYSNVHLGNCRTFISFDMIYRYLQHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ I + T F Sbjct: 66 YK-VRYVRNITDAGHLTDDADEGEDKISKKARVEKLE-PME-----IVQQYTLDFHNVLN 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRK 169 + L P +P AT HI + I +I+ II +G+AYE N I F+ YG S RK Sbjct: 119 KFNNLPPNIEPTATGHIVEQIEIIKTIIDNGYAYERNGSIYFNVLKFNEDHEYGKLSGRK 178 Query: 170 IDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K NP DF LWK+++P W SPWG G PGWH+EC+ MSS YL Sbjct: 179 LEDMIANTRALDAQSEKDNPQDFALWKKASPAHIMRWPSPWGDGFPGWHLECTVMSSKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FDIHGGG+DL FPHHE EIAQ A N W+H L L G+KMSKS GN I Sbjct: 239 GETFDIHGGGMDLKFPHHECEIAQGEAA-HGHSPVNYWLHANMLTLNGKKMSKSTGNSIL 297 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------- 339 EL F +++ V+R M+ HYR +DF+ + AE ++ + Sbjct: 298 PEELFTGDNDFMEKAFSPSVVRFFMMQAHYRSVLDFSNDAILAAEKGFNRLSEAIKTIDD 357 Query: 340 -TSTSKGIID-PA----VLSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLL 382 T + + ID PA +A+ +D N+ I L + A+ + + +L+ Sbjct: 358 LTPSKESSIDVPAWVERCYAAMNDDFNSPILIAELFEGAKMIHAVKEGKQTATAGDTELI 417 Query: 383 -PIFNASAH-ILGIEVC-------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 FNA + +LG+E +HL+ + + I+ Q R K ++++D IR Sbjct: 418 KETFNAFFYDVLGLETASKTGSTDSKHLDGAMQLIIDLRTQAR----ANKDWATSDQIRD 473 Query: 434 QLESKGFILED 444 QL + G L+D Sbjct: 474 QLVAAGIQLKD 484 >gi|76789524|ref|YP_328610.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] gi|237803212|ref|YP_002888406.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] gi|237805133|ref|YP_002889287.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT] gi|76168054|gb|AAX51062.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] gi|231273433|emb|CAX10348.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274446|emb|CAX11241.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] gi|296436332|gb|ADH18506.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis G/9768] gi|296438191|gb|ADH20352.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis G/11074] gi|297140692|gb|ADH97450.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis G/9301] Length = 497 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 243/485 (50%), Gaps = 65/485 (13%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 25 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 80 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 81 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 134 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 135 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 194 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 195 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 254 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 255 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 312 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 313 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 367 Query: 354 A-----------LYNDLNTVSAIQALHKLARESTKNHD---------------------L 381 A L NDLN S++ AL R+ + D + Sbjct: 368 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQTETDSSVFSKQDAQHI 427 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L + +LG+ + +I + LV++R K+K + AD +R ++ S+GF Sbjct: 428 LALLRKIDQVLGVLPFSQ---PDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRGFA 484 Query: 442 LEDYK 446 +ED K Sbjct: 485 IEDGK 489 >gi|288800463|ref|ZP_06405921.1| cysteine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332676|gb|EFC71156.1| cysteine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 497 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 173/496 (34%), Positives = 251/496 (50%), Gaps = 59/496 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K+++ IYNTL RK F+ ++ N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 3 KQQLVIYNTLSRKKETFEPLNAPNVGMYVCGPTVYGDPHLGHARPSITFDILFRYLKHL- 61 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 62 GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHDAM 114 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRR 168 L L P+ +P+AT HI + L++ I+ +G AYE+N I FDT+ YG S R Sbjct: 115 NALNVLPPSIEPQATGHIIEQEQLVKEIMDNGFAYESNGSIYFDTAKYNQKYRYGKLSGR 174 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 +D+ +R + K+N DF LWK++TP W S W G PGWH EC+AM Y Sbjct: 175 NLDDVINASRELGGVEDKRNQTDFALWKKATPEHIMKWPSSWSEGFPGWHCECTAMGRKY 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG FDIHGGG+DL+FPHHE EIAQ+ A + W+HN + + G+KM KS GNFI Sbjct: 235 LGSNFDIHGGGMDLMFPHHECEIAQA-VASQGHDMVRYWMHNNMITINGKKMGKSLGNFI 293 Query: 287 TINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG 345 T+ E + T + +++ IR +L HYR +DF+ + L AE L++ Sbjct: 294 TLEEFFKGTHEALTQAYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGLNRLLSGIKDLD 353 Query: 346 IIDPA-----------------VLSALYNDLNTVSAIQALHK--------LARESTKNHD 380 I PA +A+ +DL T I L + + + T + + Sbjct: 354 RIQPANESDKATATFVKECRSRCYNAMNDDLQTPVVISILFEACHIINTIVDHKGTISSE 413 Query: 381 LLPIFNASAH-----ILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSADYI 431 L + H ++G+ N+ A K+V L L K ++++D I Sbjct: 414 DLAELKETMHLFAFDLMGLRAENSDNNQAREEAYGKVVDMVLDLRSKAKADKDWATSDKI 473 Query: 432 RKQLESKGFILEDYKN 447 R L GF ++D K+ Sbjct: 474 RDMLADAGFEVKDTKD 489 >gi|228937392|ref|ZP_04100038.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976848|ref|ZP_04137260.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228782818|gb|EEM30984.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228822225|gb|EEM68207.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 420 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 226/444 (50%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKDAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------Q 339 +++++ + + +IR ML HYR PI+F+ + L L + + Sbjct: 232 VHDII-------KQYNPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 340 TSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 +S + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLAELEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|330836349|ref|YP_004410990.1| cysteinyl-tRNA synthetase [Spirochaeta coccoides DSM 17374] gi|329748252|gb|AEC01608.1| cysteinyl-tRNA synthetase [Spirochaeta coccoides DSM 17374] Length = 478 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 237/479 (49%), Gaps = 54/479 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +YNT+ R I EFQ I+ + MY CGPTVY++AHIGN R + DVL R+L Y Sbjct: 3 FSVYNTMSRTIEEFQPIEEGKVGMYCCGPTVYNYAHIGNLRTYVFEDVLRRVLSY--AGY 60 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V NITD+ +DK+++ AR++ S+ I S T F +D L Sbjct: 61 NVKHVMNITDVGHLTDDGDAGEDKMLKSAREKGMSV------WDIASFYTDAFFRDFDAL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS--RRKIDE 172 + P +AT+H+ QMI LIQ + GH Y A + F + P+YG + +DE Sbjct: 115 GNMRPQIICKATDHVQQMITLIQKLEEGGHTYAAGGNVYFSIDTFPDYGKLAGLHLHMDE 174 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGK 229 K G R+ K+NP DF+LW ++ W+SPWGRG PGWHIECSAMS YLG Sbjct: 175 LKAGARIEVDTFKRNPKDFVLWFTNSKFGEQAMMWDSPWGRGYPGWHIECSAMSMTYLGD 234 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FD+H GG+D I HH NEIAQS A W+H FL + KMSKS+G+F+T+ Sbjct: 235 KFDLHCGGIDAIPVHHTNEIAQSEAATGDHPWVKYWMHGEFLLNDTGKMSKSSGSFLTLQ 294 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 L++ + + R L HYR + F+ + L A L+ + + G Sbjct: 295 VLID------KGYEPLDYRFFCLGAHYRTQLRFSWEALDGARSSRRNLVGRIGRLKAEAG 348 Query: 346 IIDPA-----------VLSALYNDLNTVSAIQALHKLAR-ESTKNHDLLPIFNASAHILG 393 I P ++NDLN A+ + L + +S D L + I G Sbjct: 349 IPSPQPGETASGYLANFTEQIFNDLNMPRALAVMWGLLKDDSVSAADKLAVLLEMDKIFG 408 Query: 394 IEVCKEHLNKNISIAIE--------KLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + K ++ S +E +LV+ R K + F++AD +R +LE G+I+ D Sbjct: 409 LSFDKVQPQED-STPVEGADDPEALELVRLRAEAKKSRDFATADRLRAKLEGIGYIVTD 466 >gi|282890732|ref|ZP_06299252.1| hypothetical protein pah_c026o057 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499325|gb|EFB41624.1| hypothetical protein pah_c026o057 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 489 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 243/479 (50%), Gaps = 61/479 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NT E+++ E + I +Y CGPTVY+FAHIGN R + D+L R L+++ G K Sbjct: 18 IQLFNT-EKRVKETLVAEKGQITLYTCGPTVYNFAHIGNFRTYVFEDLLRRTLKFF-GLK 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N+TD+DDK I+ A I ++ T F +D L P Sbjct: 76 -VKQVMNLTDVDDKTIKGA------ISKGITLNAFTQPYKDAFFQDLATLHIEPAEVYPA 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT++I MI +IQ +I G AY+ + I + P YG S K+DE K+G Sbjct: 129 ATDYIQPMIEMIQTLIDKGFAYKGQDGSIYYAIRKFPRYGCLSHLKLDELKVGASERVAA 188 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 ++Y K+N +DF+LWK P G W+SP+G GRPGWH+ECSAM+ LG DIH GG Sbjct: 189 DEYDKENVSDFVLWKNYDPQRDGKIYWDSPFGPGRPGWHLECSAMAMQLLGDTIDIHVGG 248 Query: 238 LDLIFPHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 +D +FPHHENEIAQS C K W+H L ++G+KMSKS GNF T+ +LL K Sbjct: 249 VDNMFPHHENEIAQSEACSGKTFVKH---WMHAEHLIVDGKKMSKSMGNFYTLRDLL-AK 304 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGI 346 F G +R +L THY+ ++FT + L L + + S G Sbjct: 305 GFSGVE-----VRYMLLQTHYKTQLNFTFEGLDAVRHSLRRVQDFIRRVQEIKGSADSGS 359 Query: 347 IDPAVLSALY-------NDLNTVSAIQALHKLAR--------------ESTKNHDLLPIF 385 + P + LY +DLN A+ AL ++ R E+ + + L Sbjct: 360 VAPVIERTLYAFAKALADDLNISVALAALFEMIREINTLCDKGLVGDSEAAEILEFLQKI 419 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N I EV E + + + A+E +R I + K +S AD +R + S G+I+ED Sbjct: 420 NQVLAIFTFEVQAEQIPQELQDALE----QRNIARQNKNWSEADRLRDLIHSHGYIIED 474 >gi|194335476|ref|YP_002017270.1| cysteinyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194307953|gb|ACF42653.1| cysteinyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 484 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 176/488 (36%), Positives = 249/488 (51%), Gaps = 67/488 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYN+L R +F+ + P + MYVCGPTVY AH+G+A+ + FDV+ R LR+ G + V Sbjct: 5 IYNSLGRTKEKFEPLHPPIVTMYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRHS-GYR-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 YV+NITD+ +DKI ++A E P+ I+ T+ F +D +L Sbjct: 63 KYVQNITDVGHLTDDADEGEDKISKQALLEKTD-PME-----ISQFYTRSFYEDMDKLEV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ-KM 175 L P P AT HIP+ I LI+ +I GHAYE + + F S P YG S R E + Sbjct: 117 LRPNIAPAATAHIPEQIELIERLIDAGHAYEVHGNVYFSVESFPGYGKLSGRTDQEAVQS 176 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G RV + K++P+DF LWK++ E G W SPW G PGWH+ECSAMS YLG+ Sbjct: 177 GIRVGVRSEKQHPSDFALWKKA---EEGHLMKWNSPWSIGYPGWHLECSAMSMKYLGETI 233 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG++ FPHH+ EIAQS + W+HN + + G KM KS NFI + +L Sbjct: 234 DIHGGGMENKFPHHDCEIAQSESVTG-KPYVRFWMHNNMVTVNGIKMGKSLKNFINLKDL 292 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSK 344 S+ VIR +L +HYR P+DF+ + ++ L K +T + Sbjct: 293 F-------LSFDPMVIRFFILQSHYRSPLDFSDAAIRASQTGLEKLRETQRRLREQTPGS 345 Query: 345 GIIDPA-----VLSALYNDLNTVSAIQALHKLAR------ESTKNHDLLPIFNASA--HI 391 G D A A+ +D NT AI L L++ + T++ LP A+A + Sbjct: 346 GDFDTAPFIQRFTEAMDDDFNTPIAISVLFDLSKSINAALDRTESISELPQQEAAAFLDL 405 Query: 392 LGIEVC------------KEHLN-KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 G E+ E LN K + ++ L+ R K K F+ +D IR QL Sbjct: 406 AGREILCILQHDNQSGSRNEELNGKRLDGVMDILLDLRAEARKSKDFALSDKIRDQLLVA 465 Query: 439 GFILEDYK 446 G ++D K Sbjct: 466 GIEIKDTK 473 >gi|150024693|ref|YP_001295519.1| cysteinyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86] gi|187629821|sp|A6GX80|SYC_FLAPJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149771234|emb|CAL42703.1| Cysteine--tRNA ligase [Flavobacterium psychrophilum JIP02/86] Length = 495 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 184/493 (37%), Positives = 245/493 (49%), Gaps = 60/493 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IKIYN+L + F I+ NI MYVCGPTVY H+GN R + FDV+YR + G Sbjct: 7 QSIKIYNSLSGEKEIFSPINEGNIGMYVCGPTVYSNVHLGNVRTFMSFDVIYRYF-LHLG 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V Y+RNITD+ +DKI ++A+ E P+ I + T F Sbjct: 66 YK-VRYIRNITDVGHIVDDVDHGEDKIAKKAKLEQLE-PME-----IVQRYTVDFHNVLK 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L P+ +P AT HI + I +++ II G YE+N + FD +YG S R Sbjct: 119 AYNLLPPSIEPTATGHIIEQIEIVKTIINKGIGYESNGSVYFDVVKFNESNHYGKLSGRN 178 Query: 170 IDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 I++ TR + + K+N DF LWK++ P W SPW G PGWH+EC+AMS+ YL Sbjct: 179 IEDMLANTRDTDGQSDKRNHQDFALWKKAEPEHIMRWPSPWSDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 G FDIHGGG+DL FPHHE EIAQ +C ++ N W+H L L G+KMSKS GN Sbjct: 239 GSHFDIHGGGMDLKFPHHECEIAQGEACTG---QEPVNYWMHANMLTLNGKKMSKSTGNN 295 Query: 286 ITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 I +E+ F +++ A V R ML HYR +DFT RL EA L Sbjct: 296 ILPSEIYSGGSPFLTKAFSASVARFFMLQAHYRSNLDFTNDAILAAEKGFYRLMEAIGSL 355 Query: 335 SKWPQTSTSKGI-ID-----PAVLSALYNDLNTVSAIQALHKLAR---------ESTKNH 379 Q +TS ID A+ +D NT I L + R E+ Sbjct: 356 KNTAQFTTSNTTSIDIKAWKQNCYDAMNDDFNTPILIAHLFEGVRFVNVLKENKETITTE 415 Query: 380 DLLPIF---NASA-HILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRK 433 DLL NA +LG+E K N N + +E L+Q R K F+ +D IR Sbjct: 416 DLLDFLTTMNAFVFDVLGLEDEKLATNNNDKLDGVVEMLIQMRKQARDNKDFAMSDQIRD 475 Query: 434 QLESKGFILEDYK 446 QL + G L+D K Sbjct: 476 QLLALGIQLKDSK 488 >gi|109894892|sp|Q3KKR0|SYC_CHLTA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 477 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 243/486 (50%), Gaps = 65/486 (13%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 5 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 60 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 61 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 114 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 115 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 175 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 235 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 292 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 293 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 347 Query: 354 A-----------LYNDLNTVSAIQALHKLARESTKNHD---------------------L 381 A L NDLN S++ AL R+ + D + Sbjct: 348 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQTETDSSVFSKQDAQHI 407 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L + +LG+ + +I + LV++R K+K + AD +R ++ S+GF Sbjct: 408 LALLRKIDQVLGVLPFSQ---PDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRGFA 464 Query: 442 LEDYKN 447 +ED K Sbjct: 465 IEDGKT 470 >gi|78189774|ref|YP_380112.1| cysteinyl-tRNA synthetase [Chlorobium chlorochromatii CaD3] gi|109894890|sp|Q3APK6|SYC_CHLCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78171973|gb|ABB29069.1| cysteinyl-tRNA synthetase [Chlorobium chlorochromatii CaD3] Length = 480 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 170/488 (34%), Positives = 247/488 (50%), Gaps = 65/488 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R F+ + + +YVCGPTVY AH+G+A+ I FDV+ R R G K Sbjct: 3 LAIYNSLSRTKEIFEPLHSGVVSIYVCGPTVYGHAHLGHAKSYISFDVVVRWFRQS-GYK 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y++NITD+ +DKI+++AR E P+ I T+ F +D RL Sbjct: 62 -VKYIQNITDVGHLTDDADEGEDKIMKQARLEKTD-PME-----IAQFYTRSFYEDMDRL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ- 173 P P AT HIP+ I L++ ++ G+AYE N + F +S YG S R E Sbjct: 115 GVERPNIAPTATAHIPEQIALVETLLRKGYAYEVNGNVYFSVNSFAGYGKLSGRTDQEAL 174 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGK 229 + G+RV + K++ +DF LWK++ E G W+SPW G PGWH+ECSAM+ YLG+ Sbjct: 175 QSGSRVGIRSEKRDASDFALWKKA---EEGHIMKWQSPWSVGYPGWHLECSAMAMKYLGE 231 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIHGGG++ FPHHE EIAQS A + W+HN + + G KM KS NF+ + Sbjct: 232 TIDIHGGGMENKFPHHECEIAQSEAATG-KPYVRYWMHNNMVTVNGTKMGKSLKNFVNLK 290 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------ST 342 ELL+T+ +R +L +HYR P+D++ L A L K +T + Sbjct: 291 ELLQTRN-------PLALRFFILQSHYRSPLDYSEAALDAAAQGLEKLHETLRRFRHQAA 343 Query: 343 SKGIIDPAVLS-----ALYNDLNTVSAIQALHKLARESTKNHDLLPIFN----------- 386 G +D + A+ +D NT AI L L++ D I Sbjct: 344 GSGSLDVTPYAERFSEAMNDDFNTPIAIAVLFDLSKAINSALDSKGIVEADRAAIEAFLT 403 Query: 387 -ASAHILGI---EVCKEHLNKNISIAIEKLVQERLIL----LKMKKFSSADYIRKQLESK 438 A+ + LGI + E N N ++K++Q L L K K F+++D IR L + Sbjct: 404 IAATNTLGIASNNLADEQSNGNSMQRLDKVMQIMLELRHNARKQKDFATSDKIRDMLLAA 463 Query: 439 GFILEDYK 446 G ++D K Sbjct: 464 GIEIKDTK 471 >gi|332521572|ref|ZP_08398025.1| cysteinyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4] gi|332042661|gb|EGI78861.1| cysteinyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4] Length = 493 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 250/490 (51%), Gaps = 57/490 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IKIYN+L K F++I+ + MYVCGPTVY H+GN R + FD+++R L++ G Sbjct: 7 QQIKIYNSLTGKKEPFKSINEGYVGMYVCGPTVYSNVHLGNVRTFMSFDMVFRYLKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ I + T F Sbjct: 66 YK-VRYVRNITDAGHLENDADVGEDKITKKARLEEIE-PME-----IVQRYTVDFHNVIN 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 L P+ +P AT HI + I LI II +G Y N + FD + +YG S+RK Sbjct: 119 TFNLLPPSIEPTATGHIIEQIELINAIIENGFGYVVNGSVYFDVHKYNETNDYGILSKRK 178 Query: 170 IDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + KKNP DF LWK++ P W SPW G PGWH+EC+AMS+ YL Sbjct: 179 LEDLIHNTRALDGQSDKKNPQDFALWKKAEPTHIMRWPSPWSDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGG+DL FPHHE EIAQ+ A + N W+H L L G +MSKS GN I Sbjct: 239 GNQFDIHGGGMDLKFPHHECEIAQNQAA-LGQSPVNYWMHANMLELNGARMSKSTGNIIN 297 Query: 288 INELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE--------------- 331 ELL K +++ V+R M+ + YR +D T L +E Sbjct: 298 PAELLSGKNNIMSKAYNPSVVRFFMMQSAYRSVLDLTDNGLLASEKGFNRLMNAVADIEK 357 Query: 332 --------ILLSKWPQT---STSKGIIDPAVLSALYNDLNTVSAIQALHK-LARESTKN- 378 + W Q+ + + P +++ L+ +N V+AI+ K + E K Sbjct: 358 LKTANQTNFDIQAWKQSCYDAMNDDFNTPILIANLFEGVNQVNAIKEGSKTITTEDLKTL 417 Query: 379 HDLLPIFNASAHILGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 D+ IF ILG++ +E + +S A+E L++ R K F+ +D IR +L Sbjct: 418 KDVFNIF--VFDILGLKNNQESGAGTEKLSGAVELLIKLRQEARANKDFALSDKIRDELA 475 Query: 437 SKGFILEDYK 446 + G L D + Sbjct: 476 AVGITLNDSR 485 >gi|282853446|ref|ZP_06262783.1| cysteine--tRNA ligase [Propionibacterium acnes J139] gi|282582899|gb|EFB88279.1| cysteine--tRNA ligase [Propionibacterium acnes J139] gi|314922189|gb|EFS86020.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL001PA1] gi|314928560|gb|EFS92391.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL044PA1] gi|314970346|gb|EFT14444.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL037PA3] gi|314982476|gb|EFT26569.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL110PA3] gi|315092230|gb|EFT64206.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL110PA4] gi|315094030|gb|EFT66006.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL060PA1] gi|328908175|gb|EGG27934.1| cysteine--tRNA ligase [Propionibacterium sp. P08] Length = 476 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 165/486 (33%), Positives = 237/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT I F+ + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 3 LKLYNTATHGIETFEPFREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 56 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 57 CSGYQVTVVANVTDIDDKILAK------SAATGTPWWAHAYHYENELHAAYKALGCRPPT 110 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD + P YG S ++DE Sbjct: 111 YEPRATGHIPEMIELVKTLIDKGHAYPAPDGSGDVYFDVRAWPRYGELSGMRVDEMNPAE 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 171 DSDPR-GKRDPRDFALWKGHKEDEPETASWMSPWGRGRPGWHLECSAMSGKYLGETFDIH 229 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A W+HN ++ + G KMSKS GN + E+ T Sbjct: 230 GGGIDLRFPHHENELAQSAAAGR--PFARYWMHNAWVTMSGEKMSKSLGNTAQVTEV--T 285 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 286 KAYSPRA-----VRYFLLAPHYRSMIEFSPADEGTKGSLDEATKAIERIDSFLDRAGDLV 340 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHK-----------LARESTKNH-----DL 381 + T+ + A ++A+ +DL T A+ AL E+T++H + Sbjct: 341 GEQVTASQELPAAFVTAMDDDLGTPQAVAALFSQITEGNKSVSTCDVEATRHHLARVKAM 400 Query: 382 LPIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 L +F + + + L + + ++++R K +++AD IR L + Sbjct: 401 LAVFGLDPQAPEWADVAGSDDRLEPVVDGLVHAMLEQRAEARARKDWATADAIRDTLTNL 460 Query: 439 GFILED 444 G +ED Sbjct: 461 GLTIED 466 >gi|314965270|gb|EFT09369.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL082PA2] Length = 476 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 163/486 (33%), Positives = 233/486 (47%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT I F+ + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 3 LKLYNTATHGIETFEPFREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 56 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 57 CSGYQVTVVANVTDIDDKILAK------SAATGTPWWAHAYHYENELHAAYKALGCRPPT 110 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD + P YG S ++DE Sbjct: 111 YEPRATGHIPEMIELVKTLIDKGHAYPAPDGSGDVYFDVRAWPRYGELSGMRVDEMNPAE 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 171 DSDPR-GKRDPRDFALWKGHKEDEPETASWMSPWGRGRPGWHLECSAMSGKYLGETFDIH 229 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A W+HN ++ + G KMSKS GN + E+ T Sbjct: 230 GGGIDLRFPHHENELAQSAAAGR--PFARYWMHNAWVTMSGEKMSKSLGNTAQVTEV--T 285 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 286 KAYSPRA-----VRYFLLAPHYRSMIEFSPADEGTKGSLDEATKAIERIDSFLDRAGDLV 340 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV- 396 + T+ + A ++A+ +DL T A+ AL E K+ + H+ ++ Sbjct: 341 GEQVTASQELPAAFVTAMDDDLGTPQAVAALFSQITEGNKSVSTCDVEATRHHLARVKAM 400 Query: 397 ------------------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + L + + ++++R K +++AD IR L + Sbjct: 401 LAVFGLDPQAPEWADVTGSDDRLEPVVDGLVHAMLEQRAEARARKDWATADAIRDTLTNL 460 Query: 439 GFILED 444 G +ED Sbjct: 461 GLTIED 466 >gi|116515227|ref|YP_802856.1| hypothetical protein BCc_306 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285377|sp|Q057D6|SYC_BUCCC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116257081|gb|ABJ90763.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 476 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 252/488 (51%), Gaps = 71/488 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL +K F + I +YVCG T YDF HIG+AR I+FD++ R L+ Y G Sbjct: 2 LRIFNTLTKKKEIFDFLLNKKINIYVCGVTTYDFCHIGHARTFIIFDIIIRYLQ-YLGYN 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 Y+RNITDIDDKII +A+ N++I I+ ++ + KD L + P +PR Sbjct: 61 TF-YIRNITDIDDKIINKAKIN------NESIHILVNRMIKLMHKDFLSLNLIKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKID--EQKMGTRVPE 181 T HI +I I+ ++ + +AY ++N +I+F ++ YG S R + E+ T E Sbjct: 114 VTQHISNIISSIKLLLKNNYAYVSDNKDILFKLNNFKEYGFLSNRMFNCSEKNFTTISKE 173 Query: 182 KYHKKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGG 236 K + N DF+LWK S + W SPWG GRPGWHIECS++ +++ V DIHGG Sbjct: 174 KNYINNINDFVLWKHSNQLSIDTCTNWSSPWGAGRPGWHIECSSIINNFFKDGVVDIHGG 233 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+DL+FPHHENEIAQ + + N WIH+G + + KMSKS N ++I LL Sbjct: 234 GIDLLFPHHENEIAQLKSMNN-SFSVNFWIHSGMVINKNHKMSKSFSNSVSIQYLL---- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV----- 351 + + + +IR L THYR P+ + +E +L+ K + ++D V Sbjct: 289 ---KKYDSEIIRWYFLATHYRHPLYY-----SEKNLLMMKNIFIKIYRSLLDCVVTINTK 340 Query: 352 ---------------LSALYNDLNT---VSAIQALHKLARESTKNHDLLPIFNAS----- 388 SA+ +D NT S +Q + KL ++ KN+ L AS Sbjct: 341 IDYEYHLRNKIKRKFFSAMNDDFNTPKACSILQKISKLIYKNKKNNTYLANILASDLVYL 400 Query: 389 AHILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 ILG+ C + + ++ I +EKL R K+++ +D IRK+L Sbjct: 401 GKILGLFQNDPKNFFLKDNFCNK--STDLLIIVEKLFHMRNFYRSKKQWNLSDIIRKKLF 458 Query: 437 SKGFILED 444 G I+ED Sbjct: 459 CLGVIVED 466 >gi|228989298|ref|ZP_04149289.1| Cysteinyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442] gi|228995481|ref|ZP_04155149.1| Cysteinyl-tRNA synthetase [Bacillus mycoides Rock3-17] gi|228764210|gb|EEM13089.1| Cysteinyl-tRNA synthetase [Bacillus mycoides Rock3-17] gi|228770376|gb|EEM18949.1| Cysteinyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442] Length = 420 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 228/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I I+ ++ G+AYE+ ++ + T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIEELVKKGYAYESEGDVYYKTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYNPQLIRFFMLSVHYRHPINFSEELLQNTNNGLERIKTAYGNLKHR 284 Query: 338 PQTSTS-----------KGIIDPAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST A +A+ +D NT +A+ L+ LA + + H Sbjct: 285 MESSTDLTDHNEKWLAEMKKFQVAFEAAMDDDFNTANAVTELYNLANHANQYLLEEHTSK 344 Query: 383 PIFNASAH-------ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ KE L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 AVLEAYVKQFETLFGILGLELTKEEL---LDEEIEVLIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KERNIILED------TAQGTRWKR 419 >gi|291529941|emb|CBK95526.1| cysteinyl-tRNA synthetase [Eubacterium siraeum 70/3] Length = 472 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 173/478 (36%), Positives = 248/478 (51%), Gaps = 54/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L K EF + MY CGPTVY FAHIGN R I+ DVL + LRY + Sbjct: 1 MQLYNSLSHKKEEFVPNVEGKVNMYTCGPTVYHFAHIGNLRSYIMEDVLEKYLRYVGYD- 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V V NITD+ DDK+++ A++EH ++ I T F +D T+L Sbjct: 60 -VKRVMNITDVGHLTSDGDTGDDKMLKGAKREHKTV------MEIAKYYTDAFFEDCTKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT+ I I +I ++I G+AYEA I FDTS + Y F+ K ++ Sbjct: 113 NIKRPDVVEPATHCIADFIKVISSLIEKGYAYEAGGNIYFDTSKLEKYYVFNDFKEEDLA 172 Query: 175 MGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +G R V E +K+N ADF+LW + E W+SPWG G PGWHIECS +S +LG+ Sbjct: 173 VGVREGVEEDGNKRNKADFVLWFTKSKFDDQELKWDSPWGVGYPGWHIECSCISMKHLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D FPHH NEIAQS A K N W H LN KMSKS G F+T++ Sbjct: 233 YLDIHCGGIDNAFPHHTNEIAQS-EAYLGHKWCNYWFHVHHLNTNSGKMSKSKGEFLTVS 291 Query: 290 ELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ-TSTS 343 LLE+K + PVI R L++HYR+ + FT + L A E L++K Q Sbjct: 292 -LLESKGYD------PVIYRFFCLLSHYRKSLVFTYENLDNAKGAYEKLVAKIAQLLKAE 344 Query: 344 KGIIDPAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 +G +D A +A+ ND+NT AI AL+ + + T L + +L + Sbjct: 345 QGEVDKAAYDKLREGFTAAMDNDINTSLAITALYDVLKADTTPATKLALIADFDKVLSLS 404 Query: 396 VCKE---------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ N + I +L ++R K K F+ AD +R ++ + G+ +E+ Sbjct: 405 LIEKAKAVNEKPADTNDELPAEILELAEQRKQARKDKNFALADELRDKITAMGYTVEE 462 >gi|15827087|ref|NP_301350.1| cysteinyl-tRNA synthetase [Mycobacterium leprae TN] gi|221229565|ref|YP_002502981.1| cysteinyl-tRNA synthetase [Mycobacterium leprae Br4923] gi|13431898|sp|P57990|SYC_MYCLE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781687|sp|B8ZUA9|SYC_MYCLB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13092635|emb|CAC29831.1| putative cysteinyl-tRNA synthase [Mycobacterium leprae] gi|219932672|emb|CAR70416.1| putative cysteinyl-tRNA synthase [Mycobacterium leprae Br4923] Length = 473 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 241/472 (51%), Gaps = 50/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL--RYYYG 62 +++++T+ + +F + ++ +Y+CG TV HIG+ R + FD+L R L R Y Sbjct: 7 LRLHDTVAGAVRDFVPLRAGHVSIYLCGATVQGQPHIGHVRSGVAFDILRRWLMARGY-- 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V ++RN+TDIDDKI+ +A P + + + + F L L P+ + Sbjct: 65 --DVAFIRNVTDIDDKILNKAAA--AGRPWWE----WAATHERAFTAAYDALDVLPPSAE 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI QMI LI+ +I GHAY +++ FD S P+YG S K+D G V Sbjct: 117 PRATGHITQMIELIELLIETGHAYTGGSDVYFDVLSYPDYGQLSGHKMDYIHQGEGVTTG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+DL+F Sbjct: 177 --KRDQRDFTLWKGAKSGEPSWPTPWGRGRPGWHLECSAMARAYLGSEFDIHCGGMDLVF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++ + G KMSKS GN ++I +L+ R Sbjct: 235 PHHENEIAQSRAVG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSIPAVLQ------RVR 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQ--TSTSKGIIDPAVLS 353 PA +R + HYR ++F+ L +A E L++ + G + P + Sbjct: 287 PAE-LRYYLGSAHYRSMLEFSEAALQDAVKAYVGVENFLTRVRTRVGAVGTGELTPRFAA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL----LPIFNASA-----HILGIEVCKEHLNKN 404 AL +DL A+ +H E + D+ + NA A ILG + E Sbjct: 346 ALDDDLAVPIALAEVHHARVEGNRALDIGDHEGALTNAGAIRAMMGILGCDPLDERWESR 405 Query: 405 ---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + ++ R + + + + AD IR +L+ G + D N Sbjct: 406 DETSAALAAVDVLVAAELESRQMAREQRNWVLADQIRDRLKDAGIEVTDTVN 457 >gi|288923576|ref|ZP_06417688.1| cysteinyl-tRNA synthetase [Frankia sp. EUN1f] gi|288345075|gb|EFC79492.1| cysteinyl-tRNA synthetase [Frankia sp. EUN1f] Length = 493 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 161/507 (31%), Positives = 242/507 (47%), Gaps = 78/507 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R++ F + P ++ +YVCGPTV H+G+ R + FD+L R L Sbjct: 3 LRLYDTRTRRVRPFVPLRPGHVGVYVCGPTVQSPPHVGHIRTGLAFDLLRRWLTQS--GL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TDIDDKII A Q + + ++ T+ F + + L PT P Sbjct: 61 SVTFVQNVTDIDDKIIINADQA------GTTVWELATRQTRAFDEAYRAVGVLPPTISPL 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+M+ +I ++ G AY + F + +YG+ S ++ M + Sbjct: 115 ATGHIPEMLEMISVLVERGFAYPGAGSVWFRVGAFADYGALSHQR--PASMHPSPEAEPG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK P EP W SPWG GRPGWH+ECSAM+ YLG VFDIHGGGLDL+FPH Sbjct: 173 KADPRDFALWKAVKPGEPSWSSPWGPGRPGWHLECSAMAGKYLGGVFDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCCAD---RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 HENE AQ+ CA + AN W+H G L G KMSKS GN + + L + Sbjct: 233 HENERAQTVCAAGGPAGGEMANYWMHIGLLTTGGTKMSKSLGNSFFVTDALAAVR----- 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRL--------------------------------TE 329 V+R +L HYR ++++ Q L TE Sbjct: 288 --PQVLRYHLLSAHYRSSLEYSPQTLDESGAAHDRVETFVRNALDILGGPAEAAALAGTE 345 Query: 330 AEILLSKWPQT---STSKGIIDPAVL-----SALYNDLNTVSAIQALHKLARES----TK 377 A + S P T + ++G + P ++ +A+ +DL A+ AL +K Sbjct: 346 AGLAGSVGPGTVAGAAAEGDLTPELVWSEFAAAMDDDLAIGRALAALFGAVSRGNQVLSK 405 Query: 378 NHD-----LLPIFNASAHILGIEVCKE------HLNKNISIAIEKLVQERLILLKMKKFS 426 H + + +LG++ ++ L + + L+ R + ++ Sbjct: 406 AHSRELAGWVEVTRRMLTVLGLDPVEQWPTAGAELRPALDSVMGILLDLRSSARARRDYT 465 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQR 453 AD IR +L + G ++ED GQR Sbjct: 466 EADSIRSRLAASGVVIEDTP---EGQR 489 >gi|153803824|ref|ZP_01958410.1| cysteinyl-tRNA synthetase [Vibrio cholerae MZO-3] gi|124120641|gb|EAY39384.1| cysteinyl-tRNA synthetase [Vibrio cholerae MZO-3] Length = 248 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 125/252 (49%), Positives = 165/252 (65%), Gaps = 9/252 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------AETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCA 255 HHENEIAQSCCA Sbjct: 234 HHENEIAQSCCA 245 >gi|126661994|ref|ZP_01732993.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium BAL38] gi|126625373|gb|EAZ96062.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium BAL38] Length = 494 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 243/491 (49%), Gaps = 55/491 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL + F I NI MYVCGPTVY H+GN R + FDV++R L++ Sbjct: 7 QTLHIYNTLSGEKETFTPIHEGNIGMYVCGPTVYSNVHLGNVRTFMSFDVIFRYLQHL-- 64 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 + V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 65 DYKVRYVRNITDAGHLTDDGDVDNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKVLD 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRR 168 L PT +P AT HI + I L Q +I G AYE+N + FD + NYG S R Sbjct: 119 TFNFLPPTIEPTATGHILEQIELTQKLIDTGFAYESNGSVYFDVFAYNQKGMNYGELSNR 178 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 I+E TR + + KKNP DF LWK ++P W SPWG G PGWH+EC+AMS+ Y Sbjct: 179 NIEELFANTRDLDGQSEKKNPQDFALWKNASPAHIMRWNSPWGEGFPGWHLECTAMSTKY 238 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL FPHHE E+AQ + N W+H L + G +MSKS GN+I Sbjct: 239 LGETFDIHGGGMDLKFPHHECEVAQGKACNG-HSPVNFWMHTNMLTMNGLRMSKSTGNYI 297 Query: 287 TINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLS 335 EL+ + F + + ++R L HYR +D + RL E+ L+ Sbjct: 298 LPMELVTGENTFFEKPFQPNIVRFCFLQAHYRSVLDISNDAMLASEKGYSRLMESYKLIP 357 Query: 336 KWPQTSTSKGIIDP---AVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDLLP 383 ++TS I + A+ +D NT I L + AR ES + Sbjct: 358 MLKASATSTLDIASWKQSCYDAMNDDFNTPILIAQLFEGARYINLVNDGKESLTTEHIQL 417 Query: 384 IFNASAH----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 + N + +LG+ + + +S +E L+ R K F+ +D IR QL Sbjct: 418 LQNTISSFLFDVLGLSNEASGNSNTTEKLSGVVEMLIGMRNEARANKNFALSDQIRDQLL 477 Query: 437 SKGFILEDYKN 447 + G L+D K+ Sbjct: 478 ALGIQLKDGKD 488 >gi|183221111|ref|YP_001839107.1| cysteinyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911202|ref|YP_001962757.1| cysteinyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775878|gb|ABZ94179.1| Cysteine--tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779533|gb|ABZ97831.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 485 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 170/493 (34%), Positives = 238/493 (48%), Gaps = 61/493 (12%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY 68 NT K FQ DP+++ +Y CGPTVY+FAHIGN R + DVL R L G + Sbjct: 10 NTKSGKKEPFQPKDPNSVTIYSCGPTVYNFAHIGNIRSFLFVDVLRRAL--LLGGYKLNQ 67 Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 NITDIDDKII+ SI N ++ T T F KD L H P+AT Sbjct: 68 SMNITDIDDKIIKE------SIKQNVSVEEFTKPWTDAFFKDLETLQVQKLEHYPKATES 121 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKYHKKN 187 I M+ L++ + +G AYE + + F YG S+ + K G R ++Y K + Sbjct: 122 IDDMVTLVETLQSNGLAYERDGNVYFSIQKFNQYGELSKIDVSGMKSGVRYDADEYEKDD 181 Query: 188 PADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 DF+LWK + T E W + G GRPGWH+ECSAM G DIH GG+DL+FPHHE Sbjct: 182 VRDFVLWKNQKTKEEKCWHTRIGMGRPGWHLECSAMIRKIYGTGIDIHTGGIDLLFPHHE 241 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NE AQS A E W+H L ++G KMSKS GNF T+ ++L K F R+ Sbjct: 242 NEFAQSVGAYPEETFVGTWLHCEHLLVDGEKMSKSKGNFYTLRDIL-NKGFEPRA----- 295 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------------WPQ---TST 342 IR ++ HYR ++F++ +L E+++ L + W Q T Sbjct: 296 IRFHLISAHYRSKLNFSLGKLEESKVALDRIQNTIFRLLELNPSVDLNTNDWNQIHFTDP 355 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLAR------ESTKNHDLLPIF----------N 386 +D L+A+ +DLN A+ L++ R + TK + F N Sbjct: 356 EIQTLDSDFLNAIADDLNVPKALATLYEFVRLVNQSLDQTKEKNADEFFKQCLGFFYKIN 415 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + E KE L+ I + R + + K F++AD IRK+LE G +L D K Sbjct: 416 SLFAVFSFEKQKETLDGISEDWILDQIANRKLAKQNKDFATADNIRKELEKIGILLTDTK 475 Query: 447 NPDNGQRMTRWKQ 459 + T WK+ Sbjct: 476 EGN-----TTWKK 483 >gi|217968073|ref|YP_002353579.1| cysteinyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724] gi|226735054|sp|B8E391|SYC_DICTD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|217337172|gb|ACK42965.1| cysteinyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724] Length = 465 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 249/469 (53%), Gaps = 48/469 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YNTL R+ +F+ ++P + MY CGPTVY++AHIGN R I D+L R+L Y Sbjct: 2 ELYLYNTLTRRKEKFEPLNPPYVGMYTCGPTVYNYAHIGNLRTYIFEDILKRVL--LYNG 59 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V +V NITD+ +DKI A++E + I T+ F +D + Sbjct: 60 YIVKHVMNITDVGHLTSDADEGEDKIEREAKKERRTA------WEIAEFYTEAFKRDIKK 113 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L L P +AT+HI I LI + G+ Y+ ++ I FDTS +P+YG + + ++ Sbjct: 114 LNILEPDIWCKATDHIKDFIDLILILEKKGYTYKTSDGIYFDTSKVPDYGKLAGQDLENL 173 Query: 174 KMGTRVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 G RV KKNP DF LWK + + W+SPWG G PGWHIECSAMS+ YLG+ Sbjct: 174 LPGARVEYNPEKKNPTDFALWKFSPKDVKRQMEWDSPWGIGFPGWHIECSAMSTKYLGQP 233 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIH GG+D I HH NEIAQS A + A W+H FL + ++M KS GNFIT+++ Sbjct: 234 FDIHCGGIDHIPIHHTNEIAQSEAA-YDKPMAKYWLHGEFLVMGEKRMGKSEGNFITLSD 292 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------SKWPQTSTS 343 LE K + S+ R L HYR P+ FT L A+ L ++PQ + S Sbjct: 293 -LEEKGYHPLSY-----RYFCLTAHYRSPLRFTWTALESAQRALFRLYENMKRYPQENAS 346 Query: 344 -KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE-VCKEHL 401 + A+ +DL+ A+ +L ++ D +P A +L + V L Sbjct: 347 YDKKYEEEFHKAINDDLDMPKALAITWELVKD-----DQVPPEVKRATLLQFDKVLGLSL 401 Query: 402 NKNISIAIE------KLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N I IE KLV+ER + K K + AD IR+++ +KG+I+ED Sbjct: 402 NNPPEIKIEIPEEIWKLVEERELARKNKDWEKADKIREEIRNKGYIIED 450 >gi|163846330|ref|YP_001634374.1| cysteinyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] gi|222524094|ref|YP_002568565.1| cysteinyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] gi|163667619|gb|ABY33985.1| cysteinyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] gi|222447973|gb|ACM52239.1| cysteinyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] Length = 398 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 203/382 (53%), Gaps = 30/382 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL R F + +YVCG T YD H+G+AR IVFDVL R L++ Sbjct: 1 MQLFSTLSRTRETFTVPTDRPVTLYVCGVTPYDTTHMGHARTFIVFDVLVRYLQWQ--GA 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y +N+TD+DD + ERAR++ + ++ + + +Q D L L PT PR Sbjct: 59 TVRYCQNVTDVDDPLFERARRD--GVQWDE----LAERQIRQLRADCADLNILPPTFFPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-----QKMGTRV 179 + + MI +I+ +I GHAY + + F + P++G +R E + G Sbjct: 113 VSEEVGTMIPIIERLIELGHAYVVDGNVYFSIQTDPDFGRMARMGYSELLAIANQRGNN- 171 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P +K++P DF+LW+R P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG D Sbjct: 172 PHDPNKRDPLDFVLWQRGNPDEPKWESPWGLGRPGWHIECSAMSQRYLGEQIDIHGGGAD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHH EIAQS A A W+H G + L+G KMSKS GN + + L Sbjct: 232 LIFPHHSCEIAQSESATGKRPFARFWMHVGLVWLDGEKMSKSLGNLVFARDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDPA-------- 350 R IR +L HYRE D+ L E + Q S + G P Sbjct: 285 REHHPDAIRWYLLSEHYREDFDYRRDALVRFEQYAADLRQALSVTGGSHSPLDVSRGRED 344 Query: 351 VLSALYNDLNTVSAIQALHKLA 372 V++A+ +DL+T + + LH +A Sbjct: 345 VIAAMNDDLDTPTVLAVLHTMA 366 >gi|269302721|gb|ACZ32821.1| cysteinyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] Length = 474 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 167/482 (34%), Positives = 243/482 (50%), Gaps = 62/482 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + YNT +K E + + +R+Y CGPTVYD+AHIGN R + D+L R L ++ Sbjct: 9 LYFYNTASQK-KELFFPNHTPVRLYTCGPTVYDYAHIGNFRTYVFEDILKRTLVFF--GY 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD++DK I A ++ +IP+ + T T+ F +D L P Sbjct: 66 SVTHVMNITDVEDKTIAGASKK--NIPLQE----YTQPYTEAFFEDLDTLNIAKADFYPH 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEK 182 AT++IPQMI I ++ G AY + + F + PNYG S + + +R+ ++ Sbjct: 120 ATHYIPQMIQAITKLLEQGIAYIGQDASVYFSLNRFPNYGKLSHLDLSSLRCCSRISADE 179 Query: 183 YHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 Y K+NP+DF+LWK P G WESP+G+GRPGWH+ECS M+ LG DIH GG+D Sbjct: 180 YDKENPSDFVLWKAYNPERDGVIYWESPFGKGRPGWHLECSIMAMELLGDSLDIHAGGVD 239 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 IFPHHENEIAQS + W+H+ L ++G+KMSKS GNF+T+ +LL + F G Sbjct: 240 NIFPHHENEIAQSEALSG-KPFVRYWLHSEHLLIDGKKMSKSLGNFLTLRDLLH-QGFTG 297 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL------------------SKWPQTS 341 + +R +L +HYR ++FT + L L S P+T Sbjct: 298 QE-----VRYMLLQSHYRTQLNFTEEALLACRHALRRLKDFVSRLEGVDLPGESPLPRTL 352 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAH 390 S A AL NDLN + +L E D +L Sbjct: 353 DSSSQFIEAFSRALANDLNVSTGFASLFDFVHEINTLIDQGHFSKADSLYILDTLKKVDT 412 Query: 391 ILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ VC I + +LV ER K K ++ AD +R ++ + GF++ED Sbjct: 413 VLGVLPLTTSVC-------IPETVMQLVAEREEARKTKNWAMADTLRDEILAAGFLVEDS 465 Query: 446 KN 447 K+ Sbjct: 466 KS 467 >gi|325681471|ref|ZP_08160997.1| cysteine--tRNA ligase [Ruminococcus albus 8] gi|324106961|gb|EGC01251.1| cysteine--tRNA ligase [Ruminococcus albus 8] Length = 470 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 173/487 (35%), Positives = 242/487 (49%), Gaps = 53/487 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL K+ EF + MY CGPTVY FAHIGN R I+ DVL + +R+ + Sbjct: 1 MRIYNTLSHKVEEFVPNTAGKVAMYTCGPTVYHFAHIGNLRSYIMEDVLEKYMRWQGLD- 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V V NITD+ DDK+++ A++EH ++ I T F D +L Sbjct: 60 -VKRVMNITDVGHLTSDGDTGDDKMLKGAKREHKTV------MEIAKFYTDAFFTDCAKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT +I + I +I ++I G+AYEA I FDTS + Y F ++ + Sbjct: 113 NIKTPDVVAPATTYIDEFIKVISSLIEKGYAYEAGGNIYFDTSKLDEYYVFHNFSAEDLE 172 Query: 175 MGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +G R V E +K+N ADF+LW + E WESPWG G PGWHIECS +S LG+ Sbjct: 173 VGVREGVEEDTNKRNKADFVLWFTKSKFDDQELKWESPWGVGYPGWHIECSCISMKNLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D IFPHH NEIAQS A K N W H LN + KMSKS G F+T++ Sbjct: 233 YLDIHCGGVDNIFPHHTNEIAQS-EAYIGHKWCNYWFHVHHLNTDTGKMSKSKGEFLTVS 291 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSK 344 LLE K + V R L +HYR+ + F+ + L A+ K S K Sbjct: 292 -LLEEK-----GYDPLVYRFFCLQSHYRKSLVFSWENLDNAKTAYEKLTARIASLMSGDK 345 Query: 345 GIIDPAVLSALY--------NDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 G + A AL +D+NT + I AL+ + + T L + +L + + Sbjct: 346 GEVISADFDALKAKFTAAMDDDINTSNGITALYDVLKADTTPATKLALIEDFDKVLSVGL 405 Query: 397 CK-------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 K E +I + LV+ER K K F+ AD IR ++ + G+ + K Sbjct: 406 IKAAEKQNEEKSGGDIPAEVMALVEERQAARKAKDFAKADEIRDKIAALGYAV---KETR 462 Query: 450 NGQRMTR 456 G +T+ Sbjct: 463 QGTEITK 469 >gi|313765525|gb|EFS36889.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL013PA1] gi|313772927|gb|EFS38893.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL074PA1] gi|313793050|gb|EFS41117.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL110PA1] gi|313802500|gb|EFS43722.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL110PA2] gi|313806517|gb|EFS45024.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL087PA2] gi|313811065|gb|EFS48779.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL083PA1] gi|313814433|gb|EFS52147.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL025PA1] gi|313815074|gb|EFS52788.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL059PA1] gi|313817384|gb|EFS55098.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL046PA2] gi|313821872|gb|EFS59586.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL036PA1] gi|313824232|gb|EFS61946.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL036PA2] gi|313826599|gb|EFS64313.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL063PA1] gi|313828596|gb|EFS66310.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL063PA2] gi|313831829|gb|EFS69543.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL007PA1] gi|313834628|gb|EFS72342.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL056PA1] gi|313840141|gb|EFS77855.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL086PA1] gi|314915835|gb|EFS79666.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL005PA4] gi|314917110|gb|EFS80941.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL050PA1] gi|314921385|gb|EFS85216.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL050PA3] gi|314926686|gb|EFS90517.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL036PA3] gi|314931295|gb|EFS95126.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL067PA1] gi|314954883|gb|EFS99289.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL027PA1] gi|314958817|gb|EFT02919.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL002PA1] gi|314961109|gb|EFT05210.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL002PA2] gi|314964465|gb|EFT08565.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL082PA1] gi|314969564|gb|EFT13662.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL037PA1] gi|314974629|gb|EFT18724.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL053PA1] gi|314977177|gb|EFT21272.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL045PA1] gi|314980410|gb|EFT24504.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL072PA2] gi|314985726|gb|EFT29818.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL005PA1] gi|314987251|gb|EFT31342.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL005PA2] gi|314988860|gb|EFT32951.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL005PA3] gi|315078520|gb|EFT50551.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL053PA2] gi|315082016|gb|EFT53992.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL078PA1] gi|315082488|gb|EFT54464.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL027PA2] gi|315086199|gb|EFT58175.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL002PA3] gi|315087784|gb|EFT59760.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL072PA1] gi|315097463|gb|EFT69439.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL038PA1] gi|315099913|gb|EFT71889.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL059PA2] gi|315101774|gb|EFT73750.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL046PA1] gi|315110268|gb|EFT82244.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL030PA2] gi|327331451|gb|EGE73190.1| cysteine--tRNA ligase [Propionibacterium acnes HL096PA2] gi|327333438|gb|EGE75158.1| cysteine--tRNA ligase [Propionibacterium acnes HL096PA3] gi|327445542|gb|EGE92196.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL013PA2] gi|327447161|gb|EGE93815.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL043PA1] gi|327449804|gb|EGE96458.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL043PA2] gi|327454653|gb|EGF01308.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL087PA3] gi|327456727|gb|EGF03382.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL083PA2] gi|327457001|gb|EGF03656.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL092PA1] gi|328755708|gb|EGF69324.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL087PA1] gi|328756487|gb|EGF70103.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL025PA2] gi|328758784|gb|EGF72400.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL020PA1] gi|328761794|gb|EGF75307.1| cysteine--tRNA ligase [Propionibacterium acnes HL099PA1] Length = 490 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 235/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 17 FKLYNTATHGIETFKPLREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 70 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 71 CSGYRVTVVANVTDIDDKILAK------SAAAGTPWWAHAYHYENELHAAYKALGCRPPT 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD S P YG S ++DE Sbjct: 125 YEPRATGHIPEMIELVKTLIEKGHAYPAPDGSGDVYFDVRSWPRYGELSGMRVDEMSPAE 184 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 185 DSDPR-GKRDPRDFALWKGHKEDEPETASWVSPWGRGRPGWHLECSAMSGKYLGEAFDIH 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A+ W+HN ++ + G KMSKS GN ++E+ T Sbjct: 244 GGGIDLRFPHHENELAQSAAAGR--PFAHYWMHNAWVTMSGEKMSKSLGNTAQVSEV--T 299 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 300 KTYSPRA-----VRYFLLAPHYRSMIEFSPSDEGTKGSLDEATKAIERIDSFLDRASNLV 354 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNAS 388 + T+ + A + A+ +DL T A+ AL E K+ + L A Sbjct: 355 GEQVTASHELSEAFVIAMDDDLGTPQAVAALFSQITEGNKSVSIGDAEATRHHLSQVKAM 414 Query: 389 AHILGIE----------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + G++ L + ++ ++ +R K +++AD IR L + Sbjct: 415 LAVFGLDPQAPEWADTATGDARLEPVVDGLVQAMLDQRAEARARKDWTTADAIRDTLTNL 474 Query: 439 GFILED 444 G +ED Sbjct: 475 GLTIED 480 >gi|229027937|ref|ZP_04184090.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH1271] gi|228733325|gb|EEL84154.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH1271] Length = 420 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 229/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGNGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 338 PQTST------SKGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST K + + A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTELTDHNEKWLAELEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTST 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KDRNIILED------TAQGTRWKR 419 >gi|282878389|ref|ZP_06287179.1| cysteine--tRNA ligase [Prevotella buccalis ATCC 35310] gi|281299491|gb|EFA91870.1| cysteine--tRNA ligase [Prevotella buccalis ATCC 35310] Length = 496 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 174/499 (34%), Positives = 256/499 (51%), Gaps = 63/499 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ +YNTL RK F+ + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLFVYNTLTRKKELFKPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQLYTNRYHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P AT HI + L++ I+ +G+AYE+N + FD +YG S Sbjct: 113 MDALNVLRPSIEPHATGHIIEQEELVKQILANGYAYESNGSVYFDIEKYNKDHHYGILSG 172 Query: 168 RKIDEQKMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ +R + K+N DF LWKR+ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVINNSRELDGVDEKRNQVDFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DL+FPHHE EIAQ+ A + ++ W+HN + + G+KM KS GNF Sbjct: 233 YLGNHFDIHGGGMDLVFPHHECEIAQA-VASQGDQMVRYWMHNNMITINGKKMGKSLGNF 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+ + T +++ IR +L HYR +DF+ ++RL L Sbjct: 292 ITLEQFFHGTHDRLTQAYSPMTIRFFILSAHYRSTVDFSNKALQASEKGLERLMNGINDL 351 Query: 335 SKWPQTSTSKGIIDPAVLS-------ALYNDLNTVSAI----QALHKL-----------A 372 + STS V++ A+ +DL T + I +A H + A Sbjct: 352 ERIQAASTSDEATHQLVVTLRQKCHEAMNDDLQTPTVISNLFEACHAINSLLDHKGSINA 411 Query: 373 RESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSA 428 + T+ ++ +F + +LG++ K N A K+V L L K ++++ Sbjct: 412 EDLTELKAVMQLF--AFDLLGLKSEKGSNNDAREAAYGKVVDMVLSLRAKAKAEKDWATS 469 Query: 429 DYIRKQLESKGFILEDYKN 447 D IR L GF ++D K+ Sbjct: 470 DQIRDALAENGFEVKDTKD 488 >gi|262384651|ref|ZP_06077784.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_33B] gi|262293632|gb|EEY81567.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_33B] Length = 491 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 175/493 (35%), Positives = 258/493 (52%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLNIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD YG S Sbjct: 113 MDALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESQGSVYFDVEKYNKDHKYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLNTTRALDGQDEKHNAIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + +++ A IR +L HYR +DF+ + L AE LS+ + Sbjct: 292 ITLEQFFTGDHASLQQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLSRLMEAYGHL 351 Query: 340 -------TST--SKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLL 382 TST +KG+ + A+ +DLN+ I L +AR ++T + + L Sbjct: 352 MKLKPSATSTVDTKGLREK-CFEAMNDDLNSPIVISHLFDVARTINSVKDGKATLSEEDL 410 Query: 383 PIFNASAH-----ILGI--EVCKEHLN-KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ILG+ E N + S A++ L+ R K ++++D IR + Sbjct: 411 KELQEVFHLFLFDILGMKDEASASGSNYETFSKAVDLLLSIRQQAKANKDWATSDKIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTAMGFEIKDTKD 483 >gi|170783050|ref|YP_001711384.1| cysteinyl-tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] gi|189082062|sp|B0RAX1|SYC_CLAMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169157620|emb|CAQ02818.1| cysteinyl-tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 156/484 (32%), Positives = 243/484 (50%), Gaps = 58/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++++ + + +F + + +YVCGPTV HIG+ R + +D L R L Y + Sbjct: 3 LRLHDSRTQSLRDFVPLVDGRVGIYVCGPTVQSAPHIGHLRSALAYDQLRRWLAYRGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT VRN+TDIDDK+I+ AR+ + + ++ + +F + L L P+++PR Sbjct: 62 -VTLVRNVTDIDDKVIDNARRGQEAGGTEEWWAL-AYRVELEFSRAYAALGILPPSYEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT I +M +I ++ GHAY A++ ++ FDT+S P YG +R++ + + Sbjct: 120 ATASIGEMQAIIGRLVERGHAYPADDGSGDVYFDTASWPEYGELTRQRAADMEAAADADP 179 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++ DF LWK + P EP W SPWG GRPGWHIECSAMS+ YLG FDIHGGGL Sbjct: 180 RA-KRDVRDFALWKGAKPGEPASASWPSPWGAGRPGWHIECSAMSTRYLGAEFDIHGGGL 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A + A W+HNG + + G+KMSKS GN + +LL + + Sbjct: 239 DLRFPHHENELAQSRAAG--DPFARYWLHNGLVAVAGQKMSKSLGNSLFAADLLASAR-- 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDF---------------------TVQRLTEAEILLSKW 337 P V+R + HYR ++F + +RL ++ Sbjct: 295 ----PV-VVRYFLGSAHYRSTLEFHDGALAEAEAALDRIETFLDRSARRLAGTR-FQAEP 348 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNAS 388 T + + A+ +DL+ A+ LH R D L +A Sbjct: 349 AATDGAPAAVPDEFAEAMDDDLSVPQALAVLHDAVRAGNAALDAGDLQEAASLRADVSAM 408 Query: 389 AHILGIE--------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +LGI+ + + + +E + ER + + F+ AD IR++L G Sbjct: 409 VAVLGIDPLADEWRTASDQPARRALQALVEHRIAERQTAREARDFALADRIRQELAEAGI 468 Query: 441 ILED 444 +ED Sbjct: 469 TIED 472 >gi|300813895|ref|ZP_07094199.1| putative cysteine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511958|gb|EFK39154.1| putative cysteine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 276 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/284 (46%), Positives = 169/284 (59%), Gaps = 12/284 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L K EF I+ + MY CGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLFNSLTGKKEEFYPINSGKVTMYNCGPTVYNYIHVGNARPIVVFDTLRRY--FLYKGL 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDKII RA +E N I K ++F KD + L T P Sbjct: 59 DVKFVLNFTDIDDKIINRANEE------NKTTEQIAEKYIEEFKKDASALGLYDYQTINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+ + QMI IQ +I G AY ++ ++ FD + YG S +KI++ + G+RV Sbjct: 113 RATHVVDQMISFIQTLIDKGAAYVSSGDVYFDVNYDKEYGKLSGKKIEDLRAGSRVDVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK EP W++PWG GRPGWHIECS M+ LG DIH GG DL FP Sbjct: 173 LKRNPYDFALWKNKKENEPYWKAPWGEGRPGWHIECSVMAKTLLGDTIDIHTGGEDLKFP 232 Query: 244 HHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 HHENEIAQS C D A W+HNG + + KMSKS GNF Sbjct: 233 HHENEIAQSETCND--APFARFWLHNGMITVNNEKMSKSKGNFF 274 >gi|289424245|ref|ZP_06426028.1| cysteine--tRNA ligase [Propionibacterium acnes SK187] gi|289154942|gb|EFD03624.1| cysteine--tRNA ligase [Propionibacterium acnes SK187] Length = 486 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 235/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 13 FKLYNTATHGIETFKPLREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 66 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 67 CSGYRVTVVANVTDIDDKILAK------SAAAGTPWWAHAYHYENELHAAYKALGCRPPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD S P YG S ++DE Sbjct: 121 YEPRATGHIPEMIELVKTLIEKGHAYPAPDGSGDVYFDVRSWPRYGELSGMRVDEMSPAE 180 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 181 DSDPR-GKRDPRDFALWKGHKEDEPETASWVSPWGRGRPGWHLECSAMSGKYLGEAFDIH 239 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A+ W+HN ++ + G KMSKS GN ++E+ T Sbjct: 240 GGGIDLRFPHHENELAQSAAAGR--PFAHYWMHNAWVTMSGEKMSKSLGNTAQVSEV--T 295 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 296 KTYSPRA-----VRYFLLAPHYRSMIEFSPSDEGTKGSLDEATKAIERIDSFLDRASNLV 350 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNAS 388 + T+ + A + A+ +DL T A+ AL E K+ + L A Sbjct: 351 GEQVTASHELSEAFVIAMDDDLGTPQAVAALFSQITEGNKSVSIGDAEATRHHLSQVKAM 410 Query: 389 AHILGIE----------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + G++ L + ++ ++ +R K +++AD IR L + Sbjct: 411 LAVFGLDPQAPEWADTATGDARLEPVVDGLVQAMLDQRAEARARKDWTTADAIRDTLTNL 470 Query: 439 GFILED 444 G +ED Sbjct: 471 GLTIED 476 >gi|327329368|gb|EGE71128.1| cysteine--tRNA ligase [Propionibacterium acnes HL103PA1] Length = 476 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 165/486 (33%), Positives = 236/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 3 FKLYNTATHGIETFEPFREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 56 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 57 CSGYQVTVVANVTDIDDKILAK------SAATGTPWWAHAYHYENELHAAYKALGCRPPT 110 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD + P YG S ++DE Sbjct: 111 YEPRATGHIPEMIELVKTLIDKGHAYPAPDGSGDVYFDVRAWPRYGELSGMRVDEMNPAE 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 171 DSDPR-GKRDPRDFALWKGHKEDEPETASWMSPWGRGRPGWHLECSAMSGKYLGETFDIH 229 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A W+HN ++ + G KMSKS GN + E+ T Sbjct: 230 GGGIDLRFPHHENELAQSAAAGR--PFARYWMHNAWVTMSGEKMSKSLGNTAQVTEV--T 285 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 286 KAYSPRA-----VRYFLLAPHYRSMIEFSPADEGTKGSLDEATKAIERIDSFLDRAGDLV 340 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHK-----------LARESTKNH-----DL 381 + T+ + A ++A+ +DL T A+ AL E+T++H + Sbjct: 341 GEQVTASQELPAAFVTAMDDDLGTPQAVAALFSQITEGNKSVSTCDVEATRHHLARVKAM 400 Query: 382 LPIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 L +F + + + L + + ++++R K +++AD IR L + Sbjct: 401 LAVFGLDPQAPEWADVAGSDDRLEPVVDGLVHAMLEQRAEARARKDWATADAIRDTLTNL 460 Query: 439 GFILED 444 G +ED Sbjct: 461 GLTIED 466 >gi|148273671|ref|YP_001223232.1| cysteinyl-tRNA synthetase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166200144|sp|A5CTY3|SYC_CLAM3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|147831601|emb|CAN02569.1| cysS1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 484 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 155/484 (32%), Positives = 244/484 (50%), Gaps = 58/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++++ + + +F + + +YVCGPTV HIG+ R + +D L R L + + Sbjct: 3 LRLHDSRTQSLRDFVPLVDGRVGIYVCGPTVQSAPHIGHLRSALAYDQLRRWLTHRGLD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT VRN+TDIDDK+I+ AR+ + + ++ + +F + + L L P+++PR Sbjct: 62 -VTLVRNVTDIDDKVIDNARRGQEAGGTEEWWAL-AYRVELEFSRAYSALGILPPSYEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT I +M +I+ ++ GHAY A++ ++ FDT+S P YG +R++ + + Sbjct: 120 ATASIGEMQEIIRRLVERGHAYAADDRSGDVYFDTASWPEYGELTRQRAADMEAAADADP 179 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++ DF LWK + P EP W SPWG GRPGWHIECSAMS+ YLG FDIHGGGL Sbjct: 180 RA-KRDVRDFALWKGAKPGEPASASWPSPWGSGRPGWHIECSAMSTRYLGAEFDIHGGGL 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A + A W+HNG + + G+KMSKS GN + +LL + + Sbjct: 239 DLRFPHHENELAQSRAAG--DPFARYWLHNGLVAVAGQKMSKSLGNSLFAADLLASAR-- 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDF---------------------TVQRLTEAEILLSKW 337 P V+R + HYR ++F + +RL + Sbjct: 295 ----PV-VVRYFLGSAHYRSTLEFHDGALAEAEAALDRIETFLDRSARRLAGTRFQAAPA 349 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNAS 388 + + D A+ +DL+ A+ LH R D L +A Sbjct: 350 APDGSPAAVPDE-FAEAMDDDLSVPQALAVLHDAVRAGNAALDAGDLQEAASLRADVSAM 408 Query: 389 AHILGIE--------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +LGI+ + + + +E + ER + + F+ AD IR++L G Sbjct: 409 VAVLGIDPLADEWRTASDQPARRALQALVEHRIAERQTAREARDFALADRIRQELAEAGI 468 Query: 441 ILED 444 +ED Sbjct: 469 TIED 472 >gi|289426643|ref|ZP_06428372.1| cysteine--tRNA ligase [Propionibacterium acnes J165] gi|295129940|ref|YP_003580603.1| cysteine--tRNA ligase [Propionibacterium acnes SK137] gi|289160138|gb|EFD08313.1| cysteine--tRNA ligase [Propionibacterium acnes J165] gi|291375451|gb|ADD99305.1| cysteine--tRNA ligase [Propionibacterium acnes SK137] gi|332674781|gb|AEE71597.1| cysteine--tRNA ligase [Propionibacterium acnes 266] Length = 499 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 235/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 26 FKLYNTATHGIETFKPLREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 79 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 80 CSGYRVTVVANVTDIDDKILAK------SAAAGTPWWAHAYHYENELHAAYKALGCRPPT 133 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD S P YG S ++DE Sbjct: 134 YEPRATGHIPEMIELVKTLIEKGHAYPAPDGSGDVYFDVRSWPRYGELSGMRVDEMSPAE 193 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 194 DSDPR-GKRDPRDFALWKGHKEDEPETASWVSPWGRGRPGWHLECSAMSGKYLGEAFDIH 252 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A+ W+HN ++ + G KMSKS GN ++E+ T Sbjct: 253 GGGIDLRFPHHENELAQSAAAGR--PFAHYWMHNAWVTMSGEKMSKSLGNTAQVSEV--T 308 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 309 KTYSPRA-----VRYFLLAPHYRSMIEFSPSDEGTKGSLDEATKAIERIDSFLDRASNLV 363 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNAS 388 + T+ + A + A+ +DL T A+ AL E K+ + L A Sbjct: 364 GEQVTASHELSEAFVIAMDDDLGTPQAVAALFSQITEGNKSVSIGDAEATRHHLSQVKAM 423 Query: 389 AHILGIE----------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + G++ L + ++ ++ +R K +++AD IR L + Sbjct: 424 LAVFGLDPQAPEWADTATGDARLEPVVDGLVQAMLDQRAEARARKDWTTADAIRDTLTNL 483 Query: 439 GFILED 444 G +ED Sbjct: 484 GLTIED 489 >gi|328950671|ref|YP_004368006.1| cysteinyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884] gi|328450995|gb|AEB11896.1| cysteinyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884] Length = 481 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 146/335 (43%), Positives = 191/335 (57%), Gaps = 28/335 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F+ P + +YVCGPTVY H+G+AR I +DVL R L++ G K V Sbjct: 5 IYNTLSRRKEAFEPATPGYVGIYVCGPTVYSDPHLGHARGPITYDVLRRWLQHL-GYK-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V NITD+ +DKI +RA+ E P+ + K ++ D L Sbjct: 63 RFVSNITDVGHLTDDADEGEDKIQKRAKLERLE-PME-----VAEKYMWRYFDDMRDLNV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L P PRAT HIP+ I L Q +I G+AYE N + F + P YG S +++DE G Sbjct: 117 LRPDIAPRATGHIPEQIELTQRLIERGYAYERNGSVYFRAAKWPGYGRLSGKRLDELVAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 RV + K++P D+ LWK + P W+SPWG G PGWHIECSAMS YLG+ FDIH Sbjct: 177 ARVAVREEKEDPRDWALWKAADPGHIMRWKSPWGEGYPGWHIECSAMSLKYLGENFDIHA 236 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHHE EIAQ+ A K A W+H+ + L G KM+KS GN + + ELL Sbjct: 237 GGIDLQFPHHECEIAQAEAAGY--KFARYWMHHNHVLLNGEKMAKSTGNLVVLRELLS-- 292 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 R P VIR +L +HYR +DFT + L A Sbjct: 293 ----RHEPM-VIRFYLLQSHYRSVLDFTEEGLEAA 322 >gi|41406576|ref|NP_959412.1| cysteinyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis K-10] gi|61216572|sp|Q743W3|SYC_MYCPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|41394925|gb|AAS02795.1| CysS [Mycobacterium avium subsp. paratuberculosis K-10] Length = 468 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 236/474 (49%), Gaps = 48/474 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYY 60 + ++++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L+ Sbjct: 4 RPRLRLHDTAAGAVRDFVPLRDGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLIALG 63 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y V ++RN+TDIDDKI+ +A + + F L L P+ Sbjct: 64 YD---VAFIRNVTDIDDKILNKA------AAAGRPWWEWAATYERAFSAAYDALDVLPPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI QM+ LI+ +I GHAY + ++ FD S P YG S +ID+ G V Sbjct: 115 AEPRATGHITQMVELIERLIEKGHAYTGDGDVYFDVLSYPEYGQLSGHRIDDVHQGEGVA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH EC AM+ YLG FDIH GG+DL Sbjct: 175 SG--KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMAHEYLGPEFDIHCGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I +L+ R Sbjct: 233 VFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPAMLQ------R 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQ------TSTSKGIIDPAV 351 PA +R + HYR ++F+ +Q +A + + ++ + G +P Sbjct: 285 VRPAE-LRYYLGSAHYRSMLEFSDTALQDAVKAYVGVEEFLHRVRVRVGAVEPGEPNPRF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEHLN 402 AL +DL +A+ +H+ E + D A ILG + E Sbjct: 344 ADALNDDLAVPAALAEVHQARAEGNRALDSGDHEGALRQARSIRAMMGILGCDPLHERWE 403 Query: 403 KN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + +Q R + + ++ AD IR +L+ G + D + Sbjct: 404 TRDETSAALAAVDVLVRAELQNREKAREQRNWALADEIRNRLKQAGIEVTDTAD 457 >gi|269103035|ref|ZP_06155732.1| cysteinyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162933|gb|EEZ41429.1| cysteinyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 410 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 163/435 (37%), Positives = 233/435 (53%), Gaps = 52/435 (11%) Query: 53 LYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 + R LRY + +T+VRNITDIDDKII+RA + + +T + + D Sbjct: 1 MSRYLRYLGYD--LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFD 52 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKID 171 L P +PRAT I ++I L + +I G AY A+N +++F+ S +YG S++ +D Sbjct: 53 ALGMKRPDVEPRATAFISEIIALCERLIERGFAYVADNGDVMFEVSKFKDYGRLSKQDLD 112 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + + G RV + K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG F Sbjct: 113 QLQAGARVDIELAKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHF 172 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG DL FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++ Sbjct: 173 DIHGGGSDLQFPHHENEIAQSCCAHDTQYV-NTWMHSGMVMVDREKMSKSLGNFFTIRDV 231 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 L + +R ++ HYR ++++ L +A L + TS +D +V Sbjct: 232 L-------NHYDPETVRYFLMSGHYRSQLNYSEDNLKQARSALER---LYTSLRGLDTSV 281 Query: 352 LS------------ALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNAS----AHI 391 + A+ +D NT A L +ARE T + + A A + Sbjct: 282 EAAGGEEFVARFKEAMDDDFNTPEAYSVLFDMAREINRLKTDDMAAASVLGARMRELADV 341 Query: 392 LGI-----EV-CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 LG+ EV + N + IE L+Q+RL K +++AD R +L G ILED Sbjct: 342 LGLLGQEPEVFLQSGANDDDVAEIEALIQQRLDARAAKDWAAADQARDKLTEMGIILED- 400 Query: 446 KNPDNGQRMTRWKQK 460 G + T W++K Sbjct: 401 -----GPQGTTWRRK 410 >gi|219849725|ref|YP_002464158.1| cysteinyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] gi|219543984|gb|ACL25722.1| cysteinyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] Length = 400 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 204/384 (53%), Gaps = 34/384 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++TL R F + +YVCG T YD H+G+AR IVFDVL R LR Sbjct: 1 MQLFSTLSRIREPFSPPTDRPVTLYVCGVTPYDTTHMGHARTFIVFDVLVRYLRRQ--GA 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 VTY +NITD+DD + ERAR+ D ++ + + Q D L L PT Sbjct: 59 TVTYCQNITDVDDPLFERARR--------DGVNWYELAERQIAQLRADCADLNILPPTFA 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-----QKMGT 177 PR + + MI +I+ ++ GHAY + + F + P++G +R E + G Sbjct: 111 PRVSEEVAIMIPIIERLVELGHAYVVDGNVYFSIQTDPDFGRMARMGYAELLSIANQRGN 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P +K++P DF+LW+R P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG Sbjct: 171 N-PHDPNKRDPLDFVLWQRGNPDEPKWESPWGLGRPGWHIECSAMSIRYLGEQIDIHGGG 229 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH EIAQS A A IW+H G + L+G KMSKS GN + + L+ Sbjct: 230 ADLIFPHHSCEIAQSESATGKRPFARIWMHVGLVWLDGEKMSKSLGNLVFARDALQMHH- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDPA------ 350 +R +L HYRE D+ + + E + S + G P Sbjct: 289 ------PDALRWYLLSEHYREDFDYRREAVARYEQYAADLRHALSLTGGTHSPLDVSRGR 342 Query: 351 --VLSALYNDLNTVSAIQALHKLA 372 V++++ +DL+T +A+ +LH +A Sbjct: 343 SDVITSMNDDLDTPAALASLHAMA 366 >gi|320095413|ref|ZP_08027091.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977656|gb|EFW09321.1| cysteine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 437 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 146/396 (36%), Positives = 210/396 (53%), Gaps = 52/396 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y++ + + + P + +Y+CG TV H+G+ R + FD L R LR E Sbjct: 1 MRLYDSKTASVRPLEPVVPGEVGIYLCGATVQGSPHVGHLRAAVSFDTLIRWLRRSGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKI+ ++ Q + ++F L APT++PR Sbjct: 60 -VTYVRNVTDIDDKILTKSAQAGWDW------WAWAYRYEREFTSAYDALGVQAPTYEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKI-------DEQKMG 176 AT HIP I L++ ++ GHAY+ + FD S P+YGS +R+++ DE ++ Sbjct: 113 ATGHIPDQIDLVRRLVERGHAYDDGAGNVYFDVHSQPDYGSLTRQRLADMRTTEDEAQID 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 V + K++P DF LWK + P EP W+SPWGRGRPGWH+ECSAMS YLG FDI Sbjct: 173 AAV--EAGKRDPRDFALWKATKPGEPATASWDSPWGRGRPGWHLECSAMSRRYLGDEFDI 230 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG+DL FPHHENE AQS A A +W+HN ++ +G KMSKS GN +++ L Sbjct: 231 HGGGIDLRFPHHENEQAQSHGAGW--AFARMWVHNAWVTTKGEKMSKSLGNVLSLEALT- 287 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--TSKGI----- 346 R PA +R A+ H+R I++ + L A S W + S S+ I Sbjct: 288 ------RDHPAVAVRWALSTVHHRSAIEWGPETLDNA---ASAWARFSGFVSRAIEAVGE 338 Query: 347 ------------IDPAVLSALYNDLNTVSAIQALHK 370 + A A+ +DLN A+ H+ Sbjct: 339 AGAEEVAIPADGLPAAFREAMDDDLNVAGALAVAHE 374 >gi|226226241|ref|YP_002760347.1| cysteinyl-tRNA synthetase [Gemmatimonas aurantiaca T-27] gi|226089432|dbj|BAH37877.1| cysteinyl-tRNA synthetase [Gemmatimonas aurantiaca T-27] Length = 473 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 162/491 (32%), Positives = 246/491 (50%), Gaps = 56/491 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + ++YNTL R++ F +D +RMY CGPTVY+ AH+GN R + D+L R++R + Sbjct: 3 EFRLYNTLTRRVEPFAPVDGQTVRMYTCGPTVYNPAHLGNFRTFLFEDLLRRVIRLAGWQ 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V V N+TD+DDKII +A I +T T F +D L P Sbjct: 63 --VEQVMNLTDVDDKIIRKA------AATGQDILQVTEPFTALFHQDRRYLRIEDAERYP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE- 181 +AT H+P+MI L++ ++ +G AY A + + F +YG S+ E K G RV + Sbjct: 115 KATEHVPEMIELVERLVANGVAYTAEDGSVYFAIDRFADYGKLSQLDKRELKSGARVAQD 174 Query: 182 KYHKKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 +Y K+N DF LWK + P + W+SPWGRGRPGWH+ECSAM+ YLG+ FD+H GG Sbjct: 175 EYAKENAQDFALWKSAKPEDEATGAAWDSPWGRGRPGWHLECSAMAMKYLGETFDLHAGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DLIFPHHE+EIAQS A ++ A W H FL +G KM+K GN + EL E Sbjct: 235 IDLIFPHHEDEIAQSEAATG-KQFARCWCHGEFLLTDGAKMAKRIGNVANVVELREQGIS 293 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---DPAVL-- 352 G V R + HYR+ ++ T L ++ +++ + G PA++ Sbjct: 294 G------TVYRHFVFNAHYRKQLNLTEDSLEQSRAAVNRIGAFARRLGEATHGTPALVVV 347 Query: 353 ---------SALYNDLNTVSAIQALHKLARESTKNHDLL---PIFNASAHILGIEVCKEH 400 +AL+ DLN A+ AL ++ + D+ P +A + Sbjct: 348 AERAEQEFYAALFEDLNAPEALAALFTFISDANRELDIAVAEPAVGDTAALERARTAFRL 407 Query: 401 LNKNISIAIEKLVQERLI------------LLKMKKFSSADYIRKQLESKGFILEDYKNP 448 ++ + + E+L L + + F++AD IR +L + ++ED Sbjct: 408 MDSVLDLVPEQLTDGELADWVEERLAARRAARERRDFAAADAIRVELTERNILIED---- 463 Query: 449 DNGQRMTRWKQ 459 G TRW++ Sbjct: 464 --GPAGTRWRR 472 >gi|298206748|ref|YP_003714927.1| cysteinyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] gi|83849379|gb|EAP87247.1| cysteinyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] Length = 495 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 56/492 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K ++IYN+L + F+ ID ++ MYVCGPTVY H+GN R I FD+++R L++ G Sbjct: 7 KNLQIYNSLSGQKEIFKPIDEHHVGMYVCGPTVYSNVHLGNCRTFISFDLVFRYLKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +D+I ++AR E P+ + + T F Sbjct: 66 YK-VRYVRNITDAGHLENDAEVGEDRIAKKARLEQIE-PME-----VVQRYTVDFHNTLG 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 + L P+ +P AT HI + I +I++II G AYEAN + FD +S NYG S RK Sbjct: 119 KFNNLPPSIEPTATGHIVEQIEIIKDIIDKGFAYEANGSVYFDVLKYNSSNNYGILSGRK 178 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + KKNP DF LWK++ P W SPW G PGWH+EC+ MS+ YL Sbjct: 179 LEDMIANTRELAAQSDKKNPQDFALWKKAEPQHIMRWPSPWSDGFPGWHLECTVMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FDIHGGG+DL FPHHE EIAQ A + N W+H L L G+KM+KS GN+I Sbjct: 239 GEQFDIHGGGMDLKFPHHECEIAQGKAASG-KDPVNYWMHANMLTLNGKKMAKSTGNYIL 297 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----------LLSK 336 NE+ +++ V+R +ML +YR +DF+ + L +E +L Sbjct: 298 PNEMFTGDNDILSKAYLPSVVRFSMLQANYRSILDFSDEALLASEKGYFKLMTAINMLDS 357 Query: 337 WPQTSTSKGIIDP---AVLSALYNDLNTVSAIQALH---KLARESTKNHDLLPIFNASA- 389 P ++TS ++ + +A+ +D N+ I L KL N D + N S Sbjct: 358 LPTSNTSSIDVETWKNSCYTAMNDDFNSPVLIAKLFDAVKLINTVNDNKDTITKENLSIL 417 Query: 390 ---------HILGIE-----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 +LG+E + + +S +E L+Q R K F+++D IR +L Sbjct: 418 KETLNAFVFDVLGLENANSNTATDSSSDKLSGTLELLIQLRAEARANKDFATSDKIRDEL 477 Query: 436 ESKGFILEDYKN 447 L+D K+ Sbjct: 478 AKLDIELKDGKD 489 >gi|307564821|ref|ZP_07627349.1| cysteine--tRNA ligase [Prevotella amnii CRIS 21A-A] gi|307346543|gb|EFN91852.1| cysteine--tRNA ligase [Prevotella amnii CRIS 21A-A] Length = 495 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 172/496 (34%), Positives = 252/496 (50%), Gaps = 61/496 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I ++ MYVCGPTVY H+G+ARP I FD+L+R L++ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLQHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T + Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIAKKARLEQLE-PME-----IAQHYTNSYHDAMH 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRK 169 L L P+ +P AT HI + L++ II +G+AY++N + FD + YG S R Sbjct: 114 ALNVLPPSIEPHATGHIIEQEQLVEEIINNGYAYQSNGSVYFDVAKFNEKHKYGVLSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ +R + K+N DF LWKR+ P W S W G PGWH EC+AM YL Sbjct: 174 LNDMINNSRELAGVSEKRNQVDFALWKRAMPEHIMRWPSQWSEGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGG+DL+FPHHE EIAQ+ A + + W+HN + + G+KM KS GNFIT Sbjct: 234 GNHFDIHGGGIDLVFPHHECEIAQA-VASQGDDMVKYWMHNNMITINGQKMGKSLGNFIT 292 Query: 288 INELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLS-----KW 337 +NE K K +++ IR ++ HYR +DF+ L A E L++ K Sbjct: 293 LNEFFSGKHKSLDQAYSPMTIRFFIISAHYRSTVDFSNDALKAAQKGYEKLMNGIEDLKK 352 Query: 338 PQTST---------------------SKGIIDPAVLSALYNDLNTVSAIQALHKLAREST 376 QTST + ++ PAV+S L+ + ++ + HK + Sbjct: 353 IQTSTESDANTKMFVNSLRKKCYDAMNDDLMTPAVISLLFEACHVINLL-IDHKAQISLS 411 Query: 377 KNHDLLPIFNASA-HILGI----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 + +L + N A ILG+ + E + ++ +++ R K ++ +D I Sbjct: 412 DSKELTEVMNIFAFDILGLRNERSINNEAREEAFGKVVDMVLELRAKAKAEKNWAVSDQI 471 Query: 432 RKQLESKGFILEDYKN 447 R L GF ++D K+ Sbjct: 472 RNALSEAGFQVKDTKD 487 >gi|327334964|gb|EGE76675.1| cysteine--tRNA ligase [Propionibacterium acnes HL097PA1] Length = 487 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 166/486 (34%), Positives = 235/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 K+YNT I F+ + + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 14 FKLYNTATHGIETFKPLREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 67 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 68 CSGYRVTVVANVTDIDDKILAK------SAAAGTPWWAHAYHYENELHAAYKALGCRPPT 121 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD S P YG S ++DE Sbjct: 122 YEPRATGHIPEMIELVKTLIEKGHAYPAPDGSGDVYFDVRSWPRYGELSGMRVDEMSPAE 181 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 182 DSDPR-GKRDPRDFALWKGHKEDEPETASWVSPWGRGRPGWHLECSAMSGKYLGEAFDIH 240 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A+ W+HN ++ + G KMSKS GN ++E+ T Sbjct: 241 GGGIDLRFPHHENELAQSAAAGR--PFAHYWMHNAWVTMSGEKMSKSLGNTAQVSEV--T 296 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSK-----------W 337 K + R+ +R +L HYR I+F T L EA + + Sbjct: 297 KTYSPRA-----VRYFLLAPHYRSMIEFSPSDEGTKGSLDEATKAIERIDSFLDRASNLV 351 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNAS 388 + T+ + A + A+ +DL T A+ AL E K+ + L A Sbjct: 352 GEQVTASHELSEAFVIAMDDDLGTPQAVAALFSQITEGNKSVSIGDAEATRHHLSQVKAM 411 Query: 389 AHILGIE----------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + G++ L + ++ ++ +R K +++AD IR L + Sbjct: 412 LAVFGLDPQAPEWADTATGDARLEPVVDGLVQAMLDQRAEARARKDWTTADAIRDTLTNL 471 Query: 439 GFILED 444 G +ED Sbjct: 472 GLTIED 477 >gi|224542354|ref|ZP_03682893.1| hypothetical protein CATMIT_01533 [Catenibacterium mitsuokai DSM 15897] gi|224524736|gb|EEF93841.1| hypothetical protein CATMIT_01533 [Catenibacterium mitsuokai DSM 15897] Length = 468 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 245/466 (52%), Gaps = 48/466 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL K EF+ I+ + +Y+CGPTVY+ AHIGN RPMIVFDVL R Y + Sbjct: 22 MRLFNTLTNKKEEFKPIEEGKVSIYICGPTVYNHAHIGNTRPMIVFDVLRRTFEYLGND- 80 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V N TD+DDKII+ A+ E + +T K + + L PT++PR Sbjct: 81 -VTFVSNYTDVDDKIIKAAKAEGIT------EKELTDKYIKAYEDVRAGLNIEDPTYKPR 133 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TRVP 180 T +P++I IQ +I G+AYE + ++ F + + YG S K+++ G T Sbjct: 134 VTETMPEIIDFIQALIDKGYAYEVDGDVYFRVTKVKEYGMLSGIKVEDLIAGASDRTLSV 193 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL--GKVFDIHGGGL 238 + K++ DF LWK+ T +++PW +GRPGWH EC M + GK+ DIHGGG Sbjct: 194 DDKKKESTTDFALWKK-TDEGIQFDTPWSKGRPGWHTECVVMINKLFKDGKI-DIHGGGQ 251 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS + AN W+HN +N++G KMSKS GN + +L+ +FG Sbjct: 252 DLKFPHHENEIAQSMAYNG-HPIANYWMHNQMINIDGEKMSKSLGNVLWAKDLI--VEFG 308 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------WPQTST 342 V + ML THYR P++ TV + +SK P Sbjct: 309 -----CNVFKWLMLSTHYRNPLNLTVDVIAGVRKEVSKVENATKNASLYLQVNHVPAHDY 363 Query: 343 SKGIIDPAVLSALYNDLNT-------VSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 K +D A+++AL +DLNT + ++ L+++ R K++D++ A+ +G Sbjct: 364 KKETVD-AMVNALEDDLNTSLALTQILDQVKVLNQVMRVREKDNDVIATEYATLVKMGDV 422 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + +S L +E K K F AD +RK+L +G + Sbjct: 423 LGFLFEGTKLSEEDIALYEEWNAYKKEKNFDEADRVRKELTERGIL 468 >gi|118466391|ref|YP_879853.1| cysteinyl-tRNA synthetase [Mycobacterium avium 104] gi|254773531|ref|ZP_05215047.1| cysteinyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC 25291] gi|166200182|sp|A0QAB5|SYC_MYCA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118167678|gb|ABK68575.1| cysteinyl-tRNA synthetase [Mycobacterium avium 104] Length = 468 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 234/477 (49%), Gaps = 54/477 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYY 60 + ++++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L+ Sbjct: 4 RPRLRLHDTAAGAVRDFVPLRDGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLIALG 63 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y V ++RN+TDIDDKI+ +A + + F L L P+ Sbjct: 64 YD---VAFIRNVTDIDDKILNKA------AAAGRPWWEWAATYERAFSAAYDALDVLPPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI QM+ LI+ +I GHAY + ++ FD S P YG S +ID+ G V Sbjct: 115 AEPRATGHITQMVELIERLIEKGHAYTGDGDVYFDVLSYPEYGQLSGHRIDDVHQGEGVA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH EC AM+ YLG FDIH GG+DL Sbjct: 175 SG--KRDQRDFTLWKGAKPGEPSWPTPWGRGRPGWHTECVAMAHEYLGPEFDIHCGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I +L+ R Sbjct: 233 VFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPAMLQ------R 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPA--- 350 PA +R + HYR ++F+ L +A E L + G ++P Sbjct: 285 VRPAE-LRYYLGSAHYRSMLEFSDTALQDAVKAYVGVEEFLHR---VRVRVGAVEPGEPT 340 Query: 351 --VLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKE 399 AL +DL +A+ +H+ E + D A ILG + E Sbjct: 341 PRFADALNDDLAVPAALAEVHQARAEGNRALDSGDHEGALRQARSIRAMMGILGCDPLHE 400 Query: 400 HLNKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + +Q R + + ++ AD IR +L+ G + D + Sbjct: 401 RWETRDESSAALAAVDVLVRAELQNREKAREQRNWALADEIRNRLKQAGIEVTDTAD 457 >gi|170290560|ref|YP_001737376.1| cysteinyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8] gi|170174640|gb|ACB07693.1| cysteinyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8] Length = 472 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 150/476 (31%), Positives = 242/476 (50%), Gaps = 61/476 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 ++NTL R+ F+ + + M+VCGPTVYD++H+G+AR + +D L R LR + Sbjct: 9 VFNTLTRRFEPFEPLVGRRVFMFVCGPTVYDYSHLGHARTYVFYDTLARFLRKL--GYSL 66 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y++NITD+DDKI+ RA +E P+ + + + +D L + RA+ Sbjct: 67 FYLQNITDVDDKIVNRAAEEGRD-PVE-----LAREFESYYYEDMRALNITSVNLYARAS 120 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +++ ++ ++ +I G AY + + FD ++ P+YG S ++ +E ++ R+ K+ Sbjct: 121 DYLKEIFEQVETLIKLGKAYVTESGVYFDITTFPDYGKLSGQRPEELRV-HRIEPDPTKR 179 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF LW+ E GWESPWG GRPGWHIE +A+S + GK +DIHGG ++L FPHHE Sbjct: 180 NPGDFALWRNRPREEFGWESPWGYGRPGWHIEDTAISIKHFGKQYDIHGGAIELAFPHHE 239 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 EIAQ+ + WIH G L +EG KMSKS GNF+TI E L R + A Sbjct: 240 AEIAQAESFTGEKPFVKYWIHTGLLTVEGEKMSKSLGNFVTIREAL-------REYDANT 292 Query: 307 IRLAMLMTHYREPIDF-----------------TVQRLTEAEI---------LLSKWPQT 340 +R+ +L HYR PIDF ++ L E EI LS+ + Sbjct: 293 LRIFLLSRHYRSPIDFRWEYLEQARSSYERIINCLENLKELEIGEEGDEEREFLSRVRER 352 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARE------------STKNHDLLPIFNAS 388 S + +D+NT A+ L++L R+ ++++ F+ Sbjct: 353 RDS-------FYRRMLDDVNTAEALGELYELVRDVNSFSERMGKISEAGRNEVISTFSEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + + + I ++ R L + +++ AD IR ++ G ++D Sbjct: 406 LDLLGLRIEEGPDTSMLHALISLILDVRENLRRRREYDLADEIRGRMRELGIDVQD 461 >gi|258648227|ref|ZP_05735696.1| cysteine--tRNA ligase [Prevotella tannerae ATCC 51259] gi|260852123|gb|EEX71992.1| cysteine--tRNA ligase [Prevotella tannerae ATCC 51259] Length = 495 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 252/492 (51%), Gaps = 57/492 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ I+NTL RK EF+ + P + MYVCGPTVY H+G+ARP I FD+L+RLL+ G Sbjct: 5 KLFIHNTLTRKKEEFKPLHPGRVGMYVCGPTVYGDPHLGHARPAITFDLLFRLLKNE-GY 63 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 K V YVRNITD+ +DKI ++A+ E P+ + + +F K Sbjct: 64 K-VRYVRNITDVGHLEHDADEGEDKIAKKAKLEQLE-PME-----VAQHYSNRFHKAMDD 116 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKI 170 L L P+ +P+A+ HI + L+Q I+ +G+AYE N I FD YG S R + Sbjct: 117 LNVLPPSIEPQASGHIIEQEALVQKILDNGYAYERNGSIYFDVEKYNTKYRYGILSGRNL 176 Query: 171 DEQKMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 ++ +R + K+N DF LWK++ P W SPWG G PGWH EC+AM YLG Sbjct: 177 EDTIDASRTLDGVDEKRNQVDFALWKKARPEHIMRWPSPWGDGFPGWHCECTAMGRKYLG 236 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FDIHGGG+DL+FPHHE EIAQ+ A+ E+ W+HN + + G+KM KS GNFIT+ Sbjct: 237 DHFDIHGGGMDLVFPHHECEIAQAVAAEG-EQMVRYWMHNNMITINGQKMGKSLGNFITL 295 Query: 289 NELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 + +P+ IR +L HYR +DF+ + RL E L + Sbjct: 296 EQFFTGDHPKLDQPYSPMTIRFFILQAHYRSTVDFSNEALQASRKGLDRLMEGFATLGRL 355 Query: 338 PQ------TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLLP 383 T + + +AL +DLN+ I L R ++T D L Sbjct: 356 AGNDGGEITESYAEALSERCYAALNDDLNSPIVISHLFDACRLINQVAYKQTTITPDGLE 415 Query: 384 ----IFNASA-HILGIEVCKE---HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 +F+ A +LG++ + ++ A++ L+ R K ++++D IR L Sbjct: 416 ALKRVFSLFAFDLLGLKPEADGNAQREESFGKAVDLLLDVRQQAKAAKDWATSDKIRDDL 475 Query: 436 ESKGFILEDYKN 447 + GF ++D K+ Sbjct: 476 AALGFAVKDTKD 487 >gi|300727688|ref|ZP_07061075.1| cysteine--tRNA ligase [Prevotella bryantii B14] gi|299775052|gb|EFI71657.1| cysteine--tRNA ligase [Prevotella bryantii B14] Length = 496 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 174/502 (34%), Positives = 254/502 (50%), Gaps = 69/502 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++ + IYNTL R F+ + N+ MYVCGPTVY AH+G+ARP I FD+L+R L++ Sbjct: 1 MEQHLLIYNTLTRTKELFKPLHAPNVGMYVCGPTVYGDAHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQYYTNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P AT HI + L+Q I+ +G+AYE+N + FD YG S Sbjct: 113 MDALNVLPPSIEPHATGHIIEQEQLVQQILDNGYAYESNGSVYFDIEKYDKDHKYGILSH 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R + + +R + KKN DF LWK++TP W SPWG G PGWH EC+AM Sbjct: 173 RNLTDMINNSRELNGVGEKKNQVDFALWKKATPEHIMRWPSPWGDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DL+FPHHE EIAQ+ A + ++ + W+HN + + G+KM KS GNF Sbjct: 233 YLGNHFDIHGGGMDLVFPHHECEIAQA-VASQGDQMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+++ +++ IR +L HYR +DF+ +RL A L Sbjct: 292 ITLDQFFTGNHASLDQAYSPMTIRFFILSAHYRGTVDFSNEALLAAQKGYERLMNAIDDL 351 Query: 335 SKWPQTSTS--------------------KGIIDPAVLSALYNDLNTVSAIQALHKLARE 374 S+ +TS + P V+S L+ + +++I L + Sbjct: 352 SRVQVVATSDEPTAKFVKELRQRCYDAMNDDFMTPLVISYLFEACHLINSI-----LDHK 406 Query: 375 STKNHDLLPIFNASAH-----ILGIEVCKEHLNKNISIAIEKLVQERLILL----KMKKF 425 + + D L + H +LG++ K N A K+V L L K + Sbjct: 407 ANISADDLKELTDTMHLFTFDLLGLKNEKGANNDAREEAYGKVVDMVLDLRAKAKASKDW 466 Query: 426 SSADYIRKQLESKGFILEDYKN 447 +++D IR L GF ++D K+ Sbjct: 467 ATSDQIRDMLADAGFEIKDTKD 488 >gi|297748910|gb|ADI51456.1| Cysteinyl-tRNA synthetase [Chlamydia trachomatis D-EC] gi|297749790|gb|ADI52468.1| Cysteinyl-tRNA synthetase [Chlamydia trachomatis D-LC] Length = 500 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 242/485 (49%), Gaps = 65/485 (13%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 28 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 83 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 84 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 137 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 138 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 197 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 198 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 257 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 258 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 315 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 316 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 370 Query: 354 A-----------LYNDLNTVSAIQALHKLARESTKNHD---------------------L 381 A L NDLN S++ AL R+ + D + Sbjct: 371 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQTETDSSVFSKQDAQHI 430 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L + +LG+ + +I + LV++R K+K + AD +R ++ S+ F Sbjct: 431 LALLRKIDQVLGVLPFSQ---PDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRSFA 487 Query: 442 LEDYK 446 +ED K Sbjct: 488 IEDGK 492 >gi|223040210|ref|ZP_03610489.1| cysteinyl-tRNA synthetase [Campylobacter rectus RM3267] gi|222878571|gb|EEF13673.1| cysteinyl-tRNA synthetase [Campylobacter rectus RM3267] Length = 462 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 242/472 (51%), Gaps = 52/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+++++RK EF+ + +R+YVCGPTVYD AH+G+A+ I FDVL R L G K Sbjct: 1 MQIFDSVKRKKVEFEPVKSDFVRIYVCGPTVYDDAHLGHAKSAISFDVLRRTLS-ELGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TDIDDKI+++ + S+ IT + + +D + L L P +P+ Sbjct: 60 -VKFVRNYTDIDDKILKKMSESGESLK------SITDRYIASYERDMSALNVLEPDVKPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + +MI I+ ++ +G AYE + I FDT+ Y S S K D + RV Sbjct: 113 ATQTLKEMIEYIEILLKNGFAYEIKGDGIYFDTAKDAQYLSLS-GKFDTEANVARVASSD 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL--GKVF--DIHGGGLD 239 KK+ DF+LWK E +ESP+GRGRPGWH EC AM +L G+ F DIH GGLD Sbjct: 172 EKKDEKDFVLWKFD---EKWYESPFGRGRPGWHTECVAMIKKHLSSGEKFEIDIHAGGLD 228 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ CA+R + A W+HNGF+ + KMSKS GN + + LE + G Sbjct: 229 LLFPHHENEAAQCRCAER-KSLAKYWLHNGFIQVNNEKMSKSLGNSFFVKDALE-RNLG- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDP 349 +R ++ +HYR +F+ L A+ L K ++ Sbjct: 286 -----EAVRFYLISSHYRANFNFSEDDLNAAKKRLDKIYRLKKRVLGAAANLSANEKFKS 340 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-----------AHILGI---- 394 +SA+ +DLNT A+ ++ + R + D P A A +LGI Sbjct: 341 EFMSAMQDDLNTSKALASVDEFVRSANDELDANPKDKAKKGKIAANLELIARVLGILQID 400 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + ++ IE L+ +R K + +D IR L + G L D Sbjct: 401 VFEYFQFGVSDEKRAYIEDLINQRNEAKAAKNYELSDKIRDMLAANGISLMD 452 >gi|152990845|ref|YP_001356567.1| cysteinyl-tRNA synthetase [Nitratiruptor sp. SB155-2] gi|166225301|sp|A6Q401|SYC_NITSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151422706|dbj|BAF70210.1| cysteinyl-tRNA synthetase [Nitratiruptor sp. SB155-2] Length = 465 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 170/471 (36%), Positives = 248/471 (52%), Gaps = 51/471 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY++ +++ + + +I++YVCGPTVYD AH+G+AR I FD+L R L G K Sbjct: 3 IYDSSKKEYCSLEPLKNRHIKVYVCGPTVYDDAHLGHARSAIAFDLLRRTLN-ALGYK-T 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+++N TDIDDKII++ + S + ITS Q++++D L +P+AT Sbjct: 61 TFMKNFTDIDDKIIKKMNETGKS------LQEITSYYIQRYLEDMEALGVQRADIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ MI +I+ ++ AY+ N +I FDTS Y + S K DE+ M +R+ K Sbjct: 115 QNLDAMIDMIERLLQKECAYQTPNGDIYFDTSKDEKYCTLS-HKCDEESM-SRIEPNPDK 172 Query: 186 KNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGK-----VFDIHGGGLD 239 KNPADF LWKR + ++SP+G+GRPGWHIECSAM +L DIH GG D Sbjct: 173 KNPADFALWKRCKGEGDVCFDSPFGKGRPGWHIECSAMIDKHLAYHDTPFQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ+ CA E A W+HNGF+ + G KMSKS GN I + L Sbjct: 233 LLFPHHENEAAQTRCACNQE-LAKYWMHNGFVTISGEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPA 350 + + ++R +L THYR ++F + L ++ L K Q ST + Sbjct: 285 KVYDGEILRFYLLSTHYRSDLNFNEEDLLASKKRLDKLYRLKKRVYGVQASTPQKEFVDE 344 Query: 351 VLSALYNDLN---TVSAIQALHKLARESTKNHDLLPIFNAS--------AHILGIEVCKE 399 +L AL DLN T++AI A E N+ F + +LGI Sbjct: 345 LLQALSQDLNISKTLAAIDQFIAYANEHLDNNPKDKAFKKQIVANIEYISKLLGIGHKDA 404 Query: 400 HLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ I+ IE+L+++R K K F AD IR++L S G + D Sbjct: 405 YSYFHLGISEEEKQKIEELIEKRTTAKKEKNFQLADSIREELRSMGIAIMD 455 >gi|302671187|ref|YP_003831147.1| cysteinyl-tRNA synthetase CysS [Butyrivibrio proteoclasticus B316] gi|302395660|gb|ADL34565.1| cysteinyl-tRNA synthetase CysS [Butyrivibrio proteoclasticus B316] Length = 474 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 240/483 (49%), Gaps = 58/483 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K YNTL RKI EF + + MY CGPTVY FAHIGN R I+ DVL + L Y Sbjct: 1 MSHKFTFYNTLSRKIEEFNPREEGKVSMYTCGPTVYHFAHIGNIRTYIMQDVLIKALGY- 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 V V NITD+ +DK++ A++EH ++ I T F KD Sbjct: 60 -AGYDVKRVMNITDVGHLSSDADTGEDKMLAGAKREHKTV------MEIAKFYTDAFFKD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 + P ATN IP+ I++++ ++ G+AY A + FDTS + +Y FS Sbjct: 113 FDAVGNKRPDVVEPATNCIPEFIHMVEVLLEKGYAYVAGGNVYFDTSKLQDYYVFSSEVE 172 Query: 171 DEQ-KMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSS 224 EQ ++G R V E +KKN DF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KEQLQVGVRDDVEEDTNKKNKTDFVLWFTKSKFEDQALKWDSPWGVGYPGWHIECSCISM 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +LG+ DIH GG+D IFPHH NEIAQS E W H+ LN + KMSKS G Sbjct: 233 KHLGEYIDIHCGGVDNIFPHHTNEIAQSESYLGHE-WCKYWFHSNHLNDKSGKMSKSKGA 291 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-- 342 +T++ L E + + V R L +HYR+P++F+ + L +A +K + + Sbjct: 292 VLTVSVLQE------KGYDPLVYRFFCLQSHYRKPLEFSYEALDQAAQAFNKLVKRVSEL 345 Query: 343 -SKGIIDPAV--------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 G +D A A+ NDLNT AI L+ + + + L + + +L Sbjct: 346 KEDGAVDTAAKEKFEENFRDAVSNDLNTSMAITVLYDVLKADINDATKLALVESFDKVLS 405 Query: 394 IEVCKE------------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 +++ L K I AIE+ + K K F++AD IR +L KG Sbjct: 406 LDLLGHAKAVSEGPSVDPELEKFILDAIERRANAK----KAKDFATADAIRAELLEKGVE 461 Query: 442 LED 444 ++D Sbjct: 462 IKD 464 >gi|294675457|ref|YP_003576073.1| cysteine--tRNA ligase [Prevotella ruminicola 23] gi|294474025|gb|ADE83414.1| cysteine--tRNA ligase [Prevotella ruminicola 23] Length = 496 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 172/497 (34%), Positives = 245/497 (49%), Gaps = 59/497 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F+ + N+ MYVCGPTVY H+G+ARP I FD+++R L++ Sbjct: 1 MESKLVIYNTLTRQKERFEPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDLVFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ I T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLE-PME-----IAQYYTNRYHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P AT HI + L+Q I+ +G AYE+N I FD + YG S Sbjct: 113 MDALNVLRPSIEPHATGHIIEQQQLVQQILDNGFAYESNGSIYFDIEAYNKKFQYGILSG 172 Query: 168 RKIDEQKMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R ++ K +R + K+N ADF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RSLENVKDASRELDGVGEKRNQADFALWKKAQPEHIMRWPSPWSDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL+FPHHE EIAQ+ A W+HN L + G+KM KS NF Sbjct: 233 YLGEEFDIHGGGMDLVFPHHECEIAQA-QASMGHPAVKYWMHNNMLTINGQKMGKSYNNF 291 Query: 286 ITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------- 337 IT+ + +++ IR +L HYR +DF+ + L AE L K Sbjct: 292 ITLEQFFTGNHPLLKKAYSPMTIRFFVLSAHYRGTVDFSNEALEAAEKGLEKMMNAIADL 351 Query: 338 ----------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA--------RESTKNH 379 +T + A+ +DL T I L + ++T Sbjct: 352 ERVQVADKCDAETEKVVKALRQKCYDAMNDDLATPQVISYLFEACTVVNKLTDHKATICA 411 Query: 380 DLLPIFNASAH-----ILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSADY 430 D L + H ILG++ K N A K++ L L K ++++D Sbjct: 412 DCLQELKETMHLFAEDILGLKAEKSGTNDEREAAFGKVMDMVLELRAKAKADKDWATSDK 471 Query: 431 IRKQLESKGFILEDYKN 447 IR +L + GF ++D K+ Sbjct: 472 IRDELAAAGFEVKDTKD 488 >gi|15605515|ref|NP_220301.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX] gi|255311617|ref|ZP_05354187.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis 6276] gi|255317918|ref|ZP_05359164.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis 6276s] gi|3329246|gb|AAC68377.1| Cysteinyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX] gi|296437262|gb|ADH19432.1| cysteinyl-tRNA synthetase [Chlamydia trachomatis G/11222] Length = 497 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 242/485 (49%), Gaps = 65/485 (13%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 25 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 80 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 81 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 134 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 135 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 194 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 195 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 254 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 255 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 312 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 313 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 367 Query: 354 A-----------LYNDLNTVSAIQALHKLARESTKNHD---------------------L 381 A L NDLN S++ AL R+ + D + Sbjct: 368 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQTETDSSVFSKQDAQHI 427 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L + +LG+ + +I + LV++R K+K + AD +R ++ S+ F Sbjct: 428 LALLRKIDQVLGVLPFSQ---PDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRSFA 484 Query: 442 LEDYK 446 +ED K Sbjct: 485 IEDGK 489 >gi|27904909|ref|NP_778035.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|27904307|gb|AAO27140.1| cysteinyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 469 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 236/468 (50%), Gaps = 44/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+ R + + I MYVCG T YDF HIG+ R I FDV+ R LR Sbjct: 7 LKIFNSYTRLQEQLEVDKKKTINMYVCGITAYDFCHIGHGRTFIFFDVVVRYLRSL--GY 64 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII S+ N++ ++++ D + L L P +PR Sbjct: 65 ALKYVRNITDIDDKIIA------ASLKNNESYISLSNRMISNMKDDFSALNILPPDSEPR 118 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +I +I I ++ HAY A N +I+F SS NYG+ S + + Sbjct: 119 VTENISDIIKFISILLNKKHAYVACNGDIMFSVSSYLNYGALSNQFSKILNKEINISHYS 178 Query: 184 HKKNPADFILWKRS-TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKN ADF LWK S + + GW SPWG GRPGWHIECS+M DIHGGG+DL+F Sbjct: 179 TKKNIADFALWKTSKSSIFVGWNSPWGNGRPGWHIECSSMCRSAFKNKIDIHGGGVDLLF 238 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C D + W+H G + + KMSKS N + + +LL + Sbjct: 239 PHHENELAQSVCIDS-NFSIKHWMHTGLVIINNEKMSKSLNNTLLLRDLLT-------QY 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KG--IID---PAVL 352 + +IR +L THYR P+ F + L+ + LL K + KG I+D Sbjct: 291 DSEIIRFFLLSTHYRHPLYFCYKNLSNSSKLLKKLYLSLRGVDFDIKGLDIVDNFKTDFY 350 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEV------CK 398 A+ +D NT A+ L +L++E S K L ILGI + + Sbjct: 351 KAMNSDFNTPLALSILLRLSKEINKFKLIDSNKASQLASKLRQLGSILGILLKDPEYFLQ 410 Query: 399 EHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N N SI I L+ ER ++K + AD IRK+L G +LED Sbjct: 411 NNFNCNNSIIGKINSLIYERDKARRVKDWVRADRIRKELLELGIVLED 458 >gi|149369775|ref|ZP_01889626.1| cysteinyl-tRNA synthetase [unidentified eubacterium SCB49] gi|149356266|gb|EDM44822.1| cysteinyl-tRNA synthetase [unidentified eubacterium SCB49] Length = 493 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 252/496 (50%), Gaps = 64/496 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++ IYN+L + F I+ + +YVCGPTVY H+GN R + FD+++R L++ Sbjct: 6 EQQVHIYNSLTKAKEVFTPINEGAVGLYVCGPTVYSNVHLGNCRTFLSFDLVFRYLKHL- 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 + V YVRNITD DD I ++AR E+ P+ + K T F Sbjct: 65 -DYKVRYVRNITDAGHLENDGESGDDPIAKKARLENIE-PME-----VVQKYTVDFHDTM 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRR 168 + P+ +P AT HI + I ++Q+II G+ YE N + FD + +YG S R Sbjct: 118 AKFNAFPPSIEPTATGHIIEQIEIVQDIIKKGYGYEKNGSVYFDVTKFNEDHDYGKLSGR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 +++ +R + + KKNP DF LWK++ P W SPW G PGWH+EC+AMS+ Y Sbjct: 178 NLEDMVSNSRELAGQSEKKNPQDFALWKKAEPKHIMRWPSPWSDGFPGWHLECTAMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG FDIHGGG+DL FPHHE EIAQ+ + E N+W+H L L G+KMSKS GN I Sbjct: 238 LGNKFDIHGGGMDLKFPHHECEIAQAEACNN-ESPVNVWMHANMLTLNGKKMSKSTGNNI 296 Query: 287 TINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------------- 331 +EL+ +++PA V + M HYR +DF+ + L +E Sbjct: 297 LPSELISGNNDILNKAFPATVAKFFMYQAHYRSILDFSNEALEASEKGYNRLMESYRNID 356 Query: 332 ---------ILLSKWPQT---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH 379 + +S W Q+ + + P +++ L+ ++ ++ ++ E+ K Sbjct: 357 ALPVSEMTSMNVSTWKQSCYDAMNDDFNSPILIAQLFEATKFINGVKDGNEKLSETDK-- 414 Query: 380 DLLPIFNASAH-----ILGIE-VCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYI 431 + ++ H +LG+E V E + + A+ L+Q R K ++ +D I Sbjct: 415 ---ALLKSTMHAFIFDVLGLEDVSMEGSGDSSKLEGAMNLLIQLRNEARANKDWAKSDEI 471 Query: 432 RKQLESKGFILEDYKN 447 R QL+ G L+D K+ Sbjct: 472 RDQLQEIGIQLKDGKD 487 >gi|29427401|sp|P59421|SYC_BUCBP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 464 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 236/468 (50%), Gaps = 44/468 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+ R + + I MYVCG T YDF HIG+ R I FDV+ R LR Sbjct: 2 LKIFNSYTRLQEQLEVDKKKTINMYVCGITAYDFCHIGHGRTFIFFDVVVRYLRSL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII S+ N++ ++++ D + L L P +PR Sbjct: 60 ALKYVRNITDIDDKIIA------ASLKNNESYISLSNRMISNMKDDFSALNILPPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +I +I I ++ HAY A N +I+F SS NYG+ S + + Sbjct: 114 VTENISDIIKFISILLNKKHAYVACNGDIMFSVSSYLNYGALSNQFSKILNKEINISHYS 173 Query: 184 HKKNPADFILWKRS-TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKN ADF LWK S + + GW SPWG GRPGWHIECS+M DIHGGG+DL+F Sbjct: 174 TKKNIADFALWKTSKSSIFVGWNSPWGNGRPGWHIECSSMCRSAFKNKIDIHGGGVDLLF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C D + W+H G + + KMSKS N + + +LL + Sbjct: 234 PHHENELAQSVCIDS-NFSIKHWMHTGLVIINNEKMSKSLNNTLLLRDLLT-------QY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KG--IID---PAVL 352 + +IR +L THYR P+ F + L+ + LL K + KG I+D Sbjct: 286 DSEIIRFFLLSTHYRHPLYFCYKNLSNSSKLLKKLYLSLRGVDFDIKGLDIVDNFKTDFY 345 Query: 353 SALYNDLNTVSAIQALHKLARE--------STKNHDLLPIFNASAHILGIEV------CK 398 A+ +D NT A+ L +L++E S K L ILGI + + Sbjct: 346 KAMNSDFNTPLALSILLRLSKEINKFKLIDSNKASQLASKLRQLGSILGILLKDPEYFLQ 405 Query: 399 EHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + N N SI I L+ ER ++K + AD IRK+L G +LED Sbjct: 406 NNFNCNNSIIGKINSLIYERDKARRVKDWVRADRIRKELLELGIVLED 453 >gi|11467971|sp|O84787|SYC_CHLTR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 477 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 170/486 (34%), Positives = 242/486 (49%), Gaps = 65/486 (13%) Query: 7 IYNTLERKITEFQAI-DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +YNTL R+ F + DP +++Y CGPTVYD+AHIGN R I D+L R+L + Sbjct: 5 LYNTLSREKERFLPVNDP--VKLYTCGPTVYDYAHIGNFRTYIFEDLLKRVLLFL--GYS 60 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V NITD+DDK + AR++ S+ F D L L P A Sbjct: 61 VYHVMNITDVDDKTLAGARKKGCSL------EKYCQPYIHAFFADLETLHILKADAYPHA 114 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRV-PEKY 183 T++IPQMI IQ +I G AY ++ + F S PNYG+ S ++E + R+ ++Y Sbjct: 115 THYIPQMIEAIQQLINQGVAYIGQDQSVYFSISQFPNYGALSHLNLEELRNSARIDADEY 174 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K N DF+LWK P G WESP+G+GRPGWH+ECS MS LG+ DIH GG+D Sbjct: 175 DKDNLCDFVLWKAYDPDRDGEIFWESPFGKGRPGWHLECSIMSISLLGQSLDIHAGGVDN 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + W+H+ L ++ +KMSKS GNF T+ +LL+ + F G Sbjct: 235 IFPHHENEIAQSESLSH-KPFVRYWLHSHHLLVDRKKMSKSLGNFFTLRDLLD-QGFSGE 292 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV-------QRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 +R +L HYR ++FT Q L + + S II P V + Sbjct: 293 E-----VRYLLLQGHYRTQLNFTQEGLHASRQSLKRLRDFICRLEDPSYPDDIIHPEVAT 347 Query: 354 A-----------LYNDLNTVSAIQALHKLARESTKNHD---------------------L 381 A L NDLN S++ AL R+ + D + Sbjct: 348 ACQSFLETFITSLTNDLNISSSLAALFDFIRKINSSIDQHTGIQTETDSSVFSKQDAQHI 407 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 L + +LG+ + +I + LV++R K+K + AD +R ++ S+ F Sbjct: 408 LALLRKIDQVLGVLPFSQ---PDIPEEVLLLVEQREAARKVKNWQEADRLRDEILSRSFA 464 Query: 442 LEDYKN 447 +ED K Sbjct: 465 IEDGKT 470 >gi|298377784|ref|ZP_06987734.1| cysteine--tRNA ligase [Bacteroides sp. 3_1_19] gi|298265230|gb|EFI06893.1| cysteine--tRNA ligase [Bacteroides sp. 3_1_19] Length = 491 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 256/493 (51%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLNIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD YG S Sbjct: 113 MDALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESQGSVYFDVEKYNKDHKYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLNTTRALDGQDEKHNAIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + +++ A IR +L HYR +DF+ + L AE LS+ + Sbjct: 292 ITLEQFFTGDHPSLQQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLSRLMEAYGHL 351 Query: 340 -------TST--SKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLL 382 TST +KG+ + A+ +DLN+ I L AR ++T + + L Sbjct: 352 MKLQPSATSTVDTKGLREK-CFEAMNDDLNSPIVISHLFDAARAINSVKDGKATLSEEDL 410 Query: 383 PIFNASAH-----ILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ILG++ N S A++ L+ R K ++++D IR + Sbjct: 411 KELQEVFHLFLFDILGMKDEASAGGSNYETFSKAVDLLLSIRQQAKANKDWATSDKIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTAMGFEIKDTKD 483 >gi|254822713|ref|ZP_05227714.1| cysteinyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950] Length = 469 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 234/474 (49%), Gaps = 48/474 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++++T + +F + ++ +Y+CG TV HIG+ R + FD+L R L Sbjct: 4 RARLRLHDTAAGAVRDFVPLREGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWL---I 60 Query: 62 GEKC-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C V ++RN+TDIDDKI+ +A P + + + F L L P+ Sbjct: 61 ARGCDVAFIRNVTDIDDKILNKAAA--AGRPWWE----WAATYERAFSAAYDALDVLPPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI QMI L+ +I HAY A ++ FD S P YG S KID+ G Sbjct: 115 AEPRATGHITQMIELMHRLIETEHAYAAGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGAA 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ DF LWK + P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+DL Sbjct: 175 TC--KRDQRDFTLWKAAKPGEPSWPTPWGRGRPGWHLECSAMARTYLGAEFDIHCGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A + A W+HNG++ + G KMSKS GN + I LL+ R Sbjct: 233 VFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLAIPALLQ------R 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFT---VQRLTEAEILLSKWPQ------TSTSKGIIDPAV 351 PA +R + HYR ++F+ +Q +A + + ++ G P Sbjct: 285 VRPAE-LRYYLGSAHYRSMLEFSETALQDAVKAYVGVEEFLHRVRVRVGGVEPGQWTPKF 343 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH---------ILGIEVCKEHLN 402 AL +DL +A+ +H E + D A H ILG + E Sbjct: 344 ADALNDDLAVPAALAEVHAARAEGNRALDSGDHDGALRHARAIRAMMGILGCDPLDERWE 403 Query: 403 KN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + + + ++ R + + ++ AD IR +L+ G + D + Sbjct: 404 TRDETSAALAAVDVLVHTELENREKAREQRNWALADEIRDRLKHAGIEVTDTAD 457 >gi|291556370|emb|CBL33487.1| cysteinyl-tRNA synthetase [Eubacterium siraeum V10Sc8a] Length = 472 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 172/478 (35%), Positives = 248/478 (51%), Gaps = 54/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L K EF + MY CGPTVY FAHIGN R I+ DVL + LRY + Sbjct: 1 MQLYNSLSHKKEEFVPNVEGKVNMYTCGPTVYHFAHIGNLRSYIMEDVLEKYLRYVGYD- 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V V NITD+ DDK+++ A++EH ++ I T F +D T+L Sbjct: 60 -VKRVMNITDVGHLTSDGDTGDDKMLKGAKREHKTV------MEIAKYYTDAFFEDCTKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT+ I I +I ++I G+AYEA I FDTS + Y F+ K ++ Sbjct: 113 NIKRPDVVEPATHCIADFIKVISSLIEKGYAYEAGGNIYFDTSKLEKYYVFNDFKEEDLA 172 Query: 175 MGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +G R V E +K+N ADF+LW + E W+SPWG G PGWHIECS +S +LG+ Sbjct: 173 VGVREGVEEDGNKRNKADFVLWFTKSKFDAQELKWDSPWGVGYPGWHIECSCISMKHLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D FPHH NEIAQS A K N W H LN KMSKS G F+T++ Sbjct: 233 YLDIHCGGIDNAFPHHTNEIAQS-EAYLGHKWCNYWFHVHHLNTNSGKMSKSKGEFLTVS 291 Query: 290 ELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ-TSTS 343 LLE+K + PVI R L++HYR+ + FT + L A E L++K Q Sbjct: 292 -LLESKGYD------PVIYRFFCLLSHYRKSLVFTYENLDNAKGAYEKLVAKIAQLLKAE 344 Query: 344 KGIIDPAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 +G +D A +A+ ND+NT AI AL+ + + L + +L + Sbjct: 345 QGEVDKAAYDKLREGFTAAMDNDINTSLAITALYDVLKADATPATKLALIADFDKVLSLS 404 Query: 396 VCKEHLNKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ + N + I +L ++R K K F+ AD +R ++ + G+ +E+ Sbjct: 405 LIEKAKSVNEKPADTAEELPAEILELAEQRKQARKDKNFALADELRDKITAMGYTVEE 462 >gi|313835565|gb|EFS73279.1| cysteinyl-tRNA synthetase [Propionibacterium acnes HL037PA2] Length = 476 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 164/486 (33%), Positives = 236/486 (48%), Gaps = 68/486 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT I F+ + +Y CG TV H+G+ R +VFDVL R L + Sbjct: 3 LKLYNTATHGIETFEPFREGQVSIYHCGMTVQSSPHLGHIRKEVVFDVLRRWL------E 56 Query: 65 C----VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 C VT V N+TDIDDKI+ + S + L C PT Sbjct: 57 CSGYQVTVVANVTDIDDKILAK------SAATGTPWWAHAYHYENELHAAYKALGCRPPT 110 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT HIP+MI L++ +I GHAY A + ++ FD + P YG S ++DE Sbjct: 111 YEPRATGHIPEMIELVKTLIDKGHAYPAPDGSGDVYFDVRAWPRYGELSGMRVDEMNPAE 170 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P F LWK EP W SPWGRGRPGWH+ECSAMS YLG+ FDIH Sbjct: 171 DSDPR-GKRDPRGFALWKGHKEDEPETASWMSPWGRGRPGWHLECSAMSGKYLGETFDIH 229 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL FPHHENE+AQS A R A W+HN ++ + G KMSKS GN + E+ T Sbjct: 230 GGGIDLRFPHHENELAQSAAAGR--PFARYWMHNAWVTMSGEKMSKSLGNTAQVTEV--T 285 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF------TVQRLTEAEILLSKWP---------- 338 K + R+ +R +L HYR I+F T L EA + + Sbjct: 286 KAYSPRA-----VRYFLLAPHYRSMIEFSPADEGTKGSLDEATKAIERIDSFLDRAGDLV 340 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHK-----------LARESTKNH-----DL 381 + T+ + A ++A+ +DL T A+ AL E+T++H + Sbjct: 341 GEQVTASQELPAAFVTAMDDDLGTPQAVAALFSQITEGNKSVSTCDVEATRHHLARVKAM 400 Query: 382 LPIFN---ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 L +F + + + L + + ++++R K +++AD IR L + Sbjct: 401 LAVFGLDPQAPEWADVAGSDDRLEPVVDGLVHAMLEQRAEARARKDWATADAIRDTLTNL 460 Query: 439 GFILED 444 G +ED Sbjct: 461 GLTIED 466 >gi|298527059|ref|ZP_07014468.1| cysteinyl-tRNA synthetase 1 [Mycobacterium tuberculosis 94_M4241A] gi|298496853|gb|EFI32147.1| cysteinyl-tRNA synthetase 1 [Mycobacterium tuberculosis 94_M4241A] Length = 384 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 189/331 (57%), Gaps = 23/331 (6%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRY 59 + ++++++T + +F + P ++ +Y+CG TV HIG+ R + FD+L R L R Sbjct: 4 RARLRLHDTAAGVVRDFVPLRPGHVSIYLCGATVQGLPHIGHVRSGVAFDILRRWLLARG 63 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 Y V ++RN+TDI+DKI+ +A + + + F L L P Sbjct: 64 Y----DVAFIRNVTDIEDKILAKA------AAAGRPWWEWAATHERAFTAAYDALDVLPP 113 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + +PRAT HI QMI +I+ +I GHAY ++ FD S P YG S KID+ G V Sbjct: 114 SAEPRATGHITQMIEMIERLIQAGHAYTGGGDVYFDVLSYPEYGQLSGHKIDDVHQGEGV 173 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++ DF LWK P EP W +PWGRGRPGWH+ECSAM+ YLG FDIH GG+D Sbjct: 174 AAG--KRDQRDFTLWKGEKPGEPSWPTPWGRGRPGWHLECSAMARSYLGPEFDIHCGGMD 231 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQS A + A W+HNG++ + G KMSKS GN +++ +L+ Sbjct: 232 LVFPHHENEIAQSRAAG--DGFARYWLHNGWVTMGGEKMSKSLGNVLSMPAMLQ------ 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 R PA +R + HYR ++F+ + +A Sbjct: 284 RVRPAE-LRYYLGSAHYRSMLEFSETAMQDA 313 >gi|119358160|ref|YP_912804.1| cysteinyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266] gi|119355509|gb|ABL66380.1| cysteinyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266] Length = 484 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 171/493 (34%), Positives = 247/493 (50%), Gaps = 75/493 (15%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYN+L +K +F+++ P + MYVCGPTVY AH+G+A+ + FDV+ R LR+ G + V Sbjct: 5 IYNSLGKKKEQFESLYPGLVTMYVCGPTVYGHAHLGHAKSYVSFDVVARWLRHI-GFR-V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 YV+NITD+ +DKI +AR E P+ I T+ F +D RL Sbjct: 63 KYVQNITDVGHLTDDGDDGEDKIERQARTEKTD-PME-----IAQFYTRSFYEDMDRLGV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM- 175 P P AT HIP+ I LI+ +I HAY N + F S P YG S R + + Sbjct: 117 ERPNIAPTATGHIPEQIALIEKLIASEHAYVVNGNVYFSVDSFPGYGKLSGRTDQDAVLS 176 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVF 231 G RV + K+NP+DF LWK++ EPG W SPWG G PGWH+ECSAM++ YLG Sbjct: 177 GNRVQLRSEKRNPSDFALWKKA---EPGHMMQWHSPWGSGFPGWHVECSAMATKYLGPTI 233 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG++ FPHH+ EIAQS A + W+HN + + G KM KS N + + +L Sbjct: 234 DIHGGGMENKFPHHDCEIAQSEAASG-KPFVRYWMHNNMVTVNGTKMGKSLKNSVNLKDL 292 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------SK 344 + R P VIR +L +HYR P+D++ + ++ L K T Sbjct: 293 FK------RVDPV-VIRFFILQSHYRSPLDYSETAIRASQTGLEKLHDTMRRLLQALPGS 345 Query: 345 GIIDPAVL-----SALYNDLNTVSAIQALHKLARESTKNHD------------------- 380 G ++ + SA+ +D NT AI L ++ D Sbjct: 346 GELNISAFIDRFESAMNDDFNTPIAISVLFDFSKSLNSALDQECGLSETALDNAKRFLGM 405 Query: 381 ----LLPIFNASAHIL--GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 LL I A L G+E ++ L++ ISI ++ + R + K + +D IR + Sbjct: 406 YGTTLLGIIPPEAQPLTTGMENGEKTLDEVISILLDMRKEAR----EQKNYPLSDTIRDR 461 Query: 435 LESKGFILEDYKN 447 L G ++D K+ Sbjct: 462 LLEAGIEVKDTKD 474 >gi|332287758|ref|YP_004422659.1| cysteinyl-tRNA synthetase [Chlamydophila psittaci 6BC] gi|325506592|gb|ADZ18230.1| cysteinyl-tRNA synthetase [Chlamydophila psittaci 6BC] Length = 444 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 160/454 (35%), Positives = 239/454 (52%), Gaps = 51/454 (11%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MY CGPTVYD+AHIGN R + D+L R L ++ V +V NITD+DDK + A ++ Sbjct: 1 MYTCGPTVYDYAHIGNFRTYVFEDLLKRTLLFF--GYSVKHVMNITDVDDKTLAGACKK- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 N ++ T+ Q F +D L L PRAT++IPQM+ I+ ++ G AY Sbjct: 58 -----NISLDTYTAPFIQAFFEDVATLNILPADTYPRATHYIPQMLEAIRKLLDDGIAYT 112 Query: 148 A-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPADFILWKRSTPMEPG-- 203 +N + F + P+YG S+ ++ + +RV ++Y K+N +DF+LWK G Sbjct: 113 GQDNSVYFSIKAFPSYGKLSQLQLQNLQCCSRVASDEYDKENLSDFVLWKAYDKKRDGHI 172 Query: 204 -WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 WESP+G+GRPGWH+ECS M+ LG DIH GG+D IFPHHENEIAQS + + Sbjct: 173 YWESPFGKGRPGWHLECSIMAMELLGSSIDIHAGGVDNIFPHHENEIAQSESLSH-QPFS 231 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 W+H+ L ++G+KMSKS GNF T+ LL+ R + IR +L +HYR ++F Sbjct: 232 RYWLHSEHLLVDGKKMSKSLGNFFTLRNLLD------RGFSGEEIRYMLLQSHYRMQLNF 285 Query: 323 TVQRLTEAEILL-----------SKWPQTSTSKGIIDPA-------VLSALYNDLNTVSA 364 T + L L S +P+++T ID +A+ NDLN +A Sbjct: 286 TEEGLIACRQALKRLRDFISRLESPYPESATISEDIDRCGQLFLQDFSNAIANDLNIATA 345 Query: 365 IQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEHLNKNISIAIEKLV 413 + +L ++ D +L I +LG+ L I + +LV Sbjct: 346 LASLFDFIHQTNSLIDKSNFTQADSNYVLDIMKKIDTVLGVIPFTTSL--EIPSEVAQLV 403 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +ER + K K + AD +R Q+ S G+++ED K+ Sbjct: 404 EEREVARKEKNWKQADVLRNQIASLGYVIEDTKS 437 >gi|290558858|gb|EFD92250.1| cysteinyl-tRNA synthetase [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 467 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 162/471 (34%), Positives = 247/471 (52%), Gaps = 48/471 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL +K +F ID + MY CGPTVY++ HIGN R I +D+L R Sbjct: 1 MELFNTLSKKKEKFNPIDGKTVSMYTCGPTVYNYVHIGNLRTFIFYDILKRAFEL--EGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N+TD+DDK I+ +++ S+ D ++ T+ F++D RL P+ Sbjct: 59 TVQHVMNLTDVDDKTIKGSQETGTSLE--DYTTVYTN----YFMEDLKRLNIKDNIKFPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT +I +M +I ++ G+AYEA++ I +D S +YG S ++ + +R+ + Y Sbjct: 113 ATENIDEMQSIINELLKKGYAYEADDGIYYDVSKFNDYGKLSGMTVNGKY--SRIKNDDY 170 Query: 184 HKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK T + WE +GRPGWHIECSAMS YLGK D+H G +DLI Sbjct: 171 DKENAADFALWKYWTENDGKVYWEGKLKKGRPGWHIECSAMSLKYLGKTIDVHCGAVDLI 230 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A +K N W+H L + G+KMSKS GNF T+N+L++ + Sbjct: 231 FPHHENEIAQSE-AYTGQKFVNYWVHAEHLLVNGQKMSKSLGNFYTLNDLVQ------QG 283 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIIDPAVL-- 352 + RL +L +HYR +DFT L + ++ + +T +G + A + Sbjct: 284 FNPLSFRLMVLDSHYRNRLDFTFDSLKKYEKLLKKIDLSIKSLEKTEKYEGNNNNARVQQ 343 Query: 353 -------------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 +A+ NDL+T SA+ A L + I N +L V K Sbjct: 344 IQDQVNKLLENFKAAVNNDLDTHSALVAFFSLLDLCDSTAEKGSIDNLEYKLLKDAVDKM 403 Query: 400 ------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ I +E+L ++R K K F AD +R+++ KG+ + D Sbjct: 404 NGFLGVYVEYEIPKDVEELAEKREEFRKQKNFVEADELRERINGKGYYIAD 454 >gi|77417496|sp|Q7US70|SYC_RHOBA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 537 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 152/426 (35%), Positives = 212/426 (49%), Gaps = 60/426 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL + F + + MY+CGPTVY +HIG+ ++FD + R L Y E Sbjct: 20 IRVYNTLSKTKEPFLPLRAPRVGMYLCGPTVYAESHIGHMVGPVIFDTIKRYLTYSGYE- 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD+DDK+I ++++ IP+ S I + T ++ + L H PR Sbjct: 79 -VTWVVNITDVDDKLIGKSKER--GIPM----SQIAVEMTADYLANLRELGVNQIDHLPR 131 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+PQ+I I ++ G AY + ++ FD + P YG S R +++Q+ G Sbjct: 132 ATDHMPQIIAFIGSLESKGFAYAIDGDVFFDVTKDPGYGQLSNRSVEDQQ-GEGGGAAAK 190 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGGLDL+FPH Sbjct: 191 KRNPGDFALWKSARPGEPFWDSPWGEGRPGWHIECSAMSHEILGETFDIHGGGLDLMFPH 250 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSN----------GNFITINELL 292 HENE AQS C W+HNG + +G+ KS+ ++ Sbjct: 251 HENERAQSTCC-HGAPMVKYWMHNGLMRAGEKGKVGGKSDRENAAAEAASVEEQASGKIS 309 Query: 293 ETKKFGG-----RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------- 337 +K GG RS IR +L T YR I + + L EA L + Sbjct: 310 RSKGAGGLADLIRSQTGERIRFFLLRTQYRSTIVYNEETLAEAGTSLEAFYRYFDRFAEI 369 Query: 338 ---------PQTSTSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLARE 374 T + G DPA L+A+ +D NT +AI L R Sbjct: 370 TGDSFYDLSAATRRADGGFDPAGDALLTEIHAIREKFLAAMDDDFNTGAAISVLFDALRT 429 Query: 375 STKNHD 380 ++ D Sbjct: 430 LNRHID 435 >gi|300780461|ref|ZP_07090317.1| cysteine--tRNA ligase [Corynebacterium genitalium ATCC 33030] gi|300534571|gb|EFK55630.1| cysteine--tRNA ligase [Corynebacterium genitalium ATCC 33030] Length = 473 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 241/475 (50%), Gaps = 56/475 (11%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +I++T R + F+ ++ +Y+CG T HIG+ R + FD++ R + Sbjct: 4 QIFDTATRTLRAFEPFRDGHVSIYLCGATPQSSPHIGHLRSGVAFDIVRRW--FAANGND 61 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +VRN+TDIDDKI+ +A EH P + +S ++F + L L P+ +PRA Sbjct: 62 VAFVRNVTDIDDKILTKA-AEHDR-PWWEWVSTYE----REFSRAYETLGVLPPSVEPRA 115 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI----PNYGSFSRRKIDEQKMGTRVPE 181 T H+ QM+ +Q ++ +G+AY A+ + FD ++ +YGS S ++++ + G + Sbjct: 116 TGHVTQMVDYMQRLMDNGYAYAADGSVYFDVAAWVAAGGDYGSLSGNRVEDMEQGE--TD 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+ DF LWK + P EP W +PWG GRPGWH+ECSAMS+ YLG+ FDIHGGGLDL Sbjct: 174 NRGKRGAHDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMSTWYLGESFDIHGGGLDLK 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE AQS A + A W+HN ++ + G KMSKS GN ++I+ +LE + Sbjct: 234 FPHHENEQAQSHAAG--DGFARYWMHNHWVTMAGEKMSKSLGNVLSIDRMLEAVR----- 286 Query: 302 WPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------AVL 352 PV +R + HYR ++++ + L EA + + T + P A Sbjct: 287 ---PVELRYYLGSAHYRSVLEYSPEALQEAAVAYRRIEDLITRASALAPVEPGQWTDAFA 343 Query: 353 SALYNDLNTVSAIQALHKLARESTK-----NHD----LLPIFNASAHILGIEVCK----- 398 A+ D + A+ +H R + K + D L A A +LG++ + Sbjct: 344 DAMNEDFSVPRALAEIHNTVRAANKALAAGDTDEATRLAGAVRAMAGVLGVDPVEWAGRA 403 Query: 399 ---------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + + + R K +++AD +R +L G + D Sbjct: 404 GAGSDSADTARVTEALDVLVRAELDRRAEARAAKDWATADAVRDRLTEAGIEVTD 458 >gi|167756028|ref|ZP_02428155.1| hypothetical protein CLORAM_01548 [Clostridium ramosum DSM 1402] gi|237734013|ref|ZP_04564494.1| cysteinyl-tRNA synthetase [Mollicutes bacterium D7] gi|167704020|gb|EDS18599.1| hypothetical protein CLORAM_01548 [Clostridium ramosum DSM 1402] gi|229382839|gb|EEO32930.1| cysteinyl-tRNA synthetase [Coprobacillus sp. D7] Length = 449 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 242/471 (51%), Gaps = 52/471 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ +KI+NTL K EF+ + + +YVCGPTVY++ HIGN RPMIVFDVL R Y Sbjct: 1 MEVMMKIFNTLTNKKEEFKPLREGEVSIYVCGPTVYNYVHIGNTRPMIVFDVLRRTFE-Y 59 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV---KDTTR-LAC 116 G K VT+V N TD+DDKII+ A+ E I + T +++ +D R L Sbjct: 60 LGYK-VTFVSNFTDVDDKIIKAAKAE----------GITEKELTDKYIAAYEDVRRNLNL 108 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L PT+ PR TN + +I I N++ G+AYE + ++ F S I YG S KI++ G Sbjct: 109 LFPTYAPRVTNTMDAIIKFIDNLVKSGYAYEVDGDVYFRVSKIDEYGQLSGIKIEDLVAG 168 Query: 177 T--RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSH-YLGKVFDI 233 R+ E K+ DF LWK+ T ++SPW +GRPGWH EC M + + G DI Sbjct: 169 ASERIDENDKKEESTDFALWKK-TDEGIRFDSPWSKGRPGWHTECVVMINDIFEGGKIDI 227 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG DL FPHHENEIAQS A+ W+HN +N++ +KMSKS GN I +++ Sbjct: 228 HGGGQDLKFPHHENEIAQSMACHH-HPIAHTWMHNQMINIDNQKMSKSLGNVIWAKDMV- 285 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------- 343 V++ ML +HYR P++ T + L + ++K S Sbjct: 286 ------AELGCNVVKWFMLSSHYRNPLNLTEEVLNSVKKEVAKVDNVIKSVSLYLQVNHI 339 Query: 344 ------KGIIDPAVLSALYNDLNTVSA-------IQALHKLARESTKNHDLLPIFNASAH 390 K +D ++ AL +DLNT A ++ L+ R+ KN + I + Sbjct: 340 ANENYNKAAVD-GMVGALEDDLNTSLALTKILDQVKKLNLAFRQKEKNDKAIAIEYQTLL 398 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + + + ++ A ++ Q L + K F +AD +R QL KG I Sbjct: 399 KMTAVIGFVFEPRKLNAAELEIYQAWLEAKQNKDFETADKLRTQLIEKGII 449 >gi|189502029|ref|YP_001957746.1| hypothetical protein Aasi_0619 [Candidatus Amoebophilus asiaticus 5a2] gi|189497470|gb|ACE06017.1| hypothetical protein Aasi_0619 [Candidatus Amoebophilus asiaticus 5a2] Length = 495 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/410 (37%), Positives = 217/410 (52%), Gaps = 46/410 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YN+L R+ F +P + MYVCGPTVY AH+G+AR + FDV+ R L + Sbjct: 1 MHNSLQVYNSLTRQQETFTPTNPPYVGMYVCGPTVYGPAHLGHARCYVTFDVIQRYLTHL 60 Query: 61 YGEKCVTYVRNITDID----------DKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V YVRNITD+ DKI ++A E+ P+ + + F +D Sbjct: 61 GYQ--VRYVRNITDVGHLERDADEGADKIAKQASLENVE-PME-----VVQRYMNSFHRD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L P +P+A+ HIP+ I +IQ I+ G AYE N + F+ + +YG S Sbjct: 113 MALLNVQPPNIEPQASGHIPEQIRMIQEIMNQGLAYEVNGSVYFNIMAYREKYHYGKLSG 172 Query: 168 RKIDEQKMGTRV-PEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R ID+ GTRV + KK P DF LWK++ W SPWG G PGWHIEC+A+++ Sbjct: 173 RNIDDLLAGTRVLAGQQEKKFPLDFALWKKANNTHIMRWPSPWGEGFPGWHIECTALATK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DL+FPHHE E+AQS A A W+HN + + +KMSKS GN Sbjct: 233 YLGSCFDIHGGGMDLLFPHHECELAQSQAAQHT-TLAKYWLHNNLVTINDQKMSKSLGNS 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQT 340 IT++EL + R++ V+R +L HYR + FT + L AE L++ T Sbjct: 292 ITLDELFQGIHPLLDRAYSPMVLRFFILQAHYRSTLSFTNEALQAAEKGYLKLINGLKTT 351 Query: 341 STSK------GIIDPAVLS-----------ALYNDLNTVSAIQALHKLAR 373 K G +D A+++ A+ ND NT I L L + Sbjct: 352 KDMKYAPIGLGNVDEAMVAQVEKHMAACYQAMNNDFNTAKLIAELFHLLK 401 >gi|319948867|ref|ZP_08022980.1| cysteinyl-tRNA synthetase [Dietzia cinnamea P4] gi|319437469|gb|EFV92476.1| cysteinyl-tRNA synthetase [Dietzia cinnamea P4] Length = 478 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/494 (32%), Positives = 244/494 (49%), Gaps = 67/494 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + +Y+T R + EF + + +Y+CG T HIG+ R + FD+L R LL Y Sbjct: 3 LHLYDTATRSLREFTPVREGHASVYLCGATPQAVPHIGHVRSGVAFDILRRWLLSTGYD- 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V +VRN+TDIDDKI+ +A + P + + + ++F + L L P+ +P Sbjct: 62 --VAFVRNVTDIDDKILTKAAEN--GRPWWE----WAATHEREFTRAYDALGVLPPSTEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIP--NYGSFSRRKIDEQKMGTR 178 RAT H+ QMI ++ +I G+AY A + FD S+ P +YG S ++DE G Sbjct: 114 RATGHMTQMIEYMERLIERGYAYPAEGSVYFDVAAWSAAPEGDYGHLSGHRLDEVDQG-E 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF LWK + P EP W +PWG GRPGWH+ECSAM++ YLG FDIHGGGL Sbjct: 173 AADLRGKRDPRDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMATWYLGGTFDIHGGGL 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQS A + A W+HNG++ + G KMSKS GN +++ +L + Sbjct: 233 DLQFPHHENEAAQSHAAG--DGFARYWLHNGWVTMAGEKMSKSLGNVLSVPNILTAVR-- 288 Query: 299 GRSWPAPV-IRLAMLMTHYREPIDFT-----------------VQRLTEAEILLSKWPQT 340 PV +R + HYR ++++ VQR+ EA + P Sbjct: 289 ------PVELRYYLGSAHYRSMLEYSPEALQEAAAAYRRIEAFVQRVDEA-VRSGATPDA 341 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASAH------I 391 G A +A+ +DL +A+ +H R + D A++ + Sbjct: 342 EVPVGEWTEAFAAAMDDDLGVPAALAEIHGRVRAGNTALSAGDTEAALTAASSVRAMTAV 401 Query: 392 LGIEVCKEHLNKN----------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 LG++ + + + ++ R K F++AD IR +L + G Sbjct: 402 LGVDPLDPQWASAAGGDDAALTALDLLVRAELEARAQARADKDFATADAIRDRLVAAGIE 461 Query: 442 LEDYKNPDNGQRMT 455 + D +GQ+ + Sbjct: 462 VADTA---DGQKWS 472 >gi|32473247|ref|NP_866241.1| cysteinyl-tRNA synthetase [Rhodopirellula baltica SH 1] gi|32397926|emb|CAD73927.1| cysteinyl-tRNA synthetase [Rhodopirellula baltica SH 1] Length = 628 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 152/426 (35%), Positives = 212/426 (49%), Gaps = 60/426 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL + F + + MY+CGPTVY +HIG+ ++FD + R L Y E Sbjct: 111 IRVYNTLSKTKEPFLPLRAPRVGMYLCGPTVYAESHIGHMVGPVIFDTIKRYLTYSGYE- 169 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD+DDK+I ++++ IP+ S I + T ++ + L H PR Sbjct: 170 -VTWVVNITDVDDKLIGKSKER--GIPM----SQIAVEMTADYLANLRELGVNQIDHLPR 222 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+PQ+I I ++ G AY + ++ FD + P YG S R +++Q+ G Sbjct: 223 ATDHMPQIIAFIGSLESKGFAYAIDGDVFFDVTKDPGYGQLSNRSVEDQQ-GEGGGAAAK 281 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGGLDL+FPH Sbjct: 282 KRNPGDFALWKSARPGEPFWDSPWGEGRPGWHIECSAMSHEILGETFDIHGGGLDLMFPH 341 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSN----------GNFITINELL 292 HENE AQS C W+HNG + +G+ KS+ ++ Sbjct: 342 HENERAQSTCC-HGAPMVKYWMHNGLMRAGEKGKVGGKSDRENAAAEAASVEEQASGKIS 400 Query: 293 ETKKFGG-----RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------- 337 +K GG RS IR +L T YR I + + L EA L + Sbjct: 401 RSKGAGGLADLIRSQTGERIRFFLLRTQYRSTIVYNEETLAEAGTSLEAFYRYFDRFAEI 460 Query: 338 ---------PQTSTSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLARE 374 T + G DPA L+A+ +D NT +AI L R Sbjct: 461 TGDSFYDLSAATRRADGGFDPAGDALLTEIHAIREKFLAAMDDDFNTGAAISVLFDALRT 520 Query: 375 STKNHD 380 ++ D Sbjct: 521 LNRHID 526 >gi|213963733|ref|ZP_03391983.1| cysteinyl-tRNA synthetase [Capnocytophaga sputigena Capno] gi|213953613|gb|EEB64945.1| cysteinyl-tRNA synthetase [Capnocytophaga sputigena Capno] Length = 490 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/491 (34%), Positives = 249/491 (50%), Gaps = 54/491 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++KI+N+L + F + +N+ MYVCGPTVY H+GN R + FD +YR L++ Sbjct: 1 MNHQLKIFNSLTGEKEVFVPLHENNVGMYVCGPTVYSNVHLGNVRTFMSFDFIYRTLKFL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 61 -GYK-VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFS 166 L PT +P AT HI + I L + ++ G AYE+N + FD NYG S Sbjct: 113 LEIFNLLPPTIEPTATGHILEQIQLTEKLLKDGFAYESNGSVYFDVLEYNKRGLNYGELS 172 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RR I+E TR + + K NP DF LWK+++P W SPWG G PGWH+EC+ MS+ Sbjct: 173 RRNIEELFANTRDLDGQGEKHNPQDFALWKKASPAHIMRWASPWGDGFPGWHLECTVMST 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL FPHHE EIAQ A E W+H L + G++MSKS GN Sbjct: 233 KYLGNQFDIHGGGMDLKFPHHECEIAQG-KAGHGESPVRYWMHANMLTMNGQRMSKSTGN 291 Query: 285 FITINELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--- 340 +I +L+ + F + + VIR + HYR +D + + + AE S+ + Sbjct: 292 YILPMQLISGENSFFEKPFAPAVIRFCFMQAHYRSVLDISNEAMLAAEKGFSRLMEAVKT 351 Query: 341 --STSKGIIDPAVLS------------ALYNDLNTVSAIQALHKLARESTKN-------- 378 S + P LS AL +D N+ I L ++ + + Sbjct: 352 LNEMSTDLEHPGPLSYEIDQWKQKCYDALLDDFNSPILIAHLFEMVKWINSDEKISVDEL 411 Query: 379 HDLLPIFNASAH-ILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 ++L + NA +LG++ ++ +N N + ++ L+ R+ K ++ +D IR +L Sbjct: 412 NELKTLMNAFVFDVLGLQSEQQTVNNNDKLDGVLQLLINMRMEARANKDWALSDKIRDEL 471 Query: 436 ESKGFILEDYK 446 + G L+D K Sbjct: 472 LAMGIQLKDGK 482 >gi|327540430|gb|EGF27015.1| cysteinyl-tRNA synthetase [Rhodopirellula baltica WH47] Length = 539 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 173/539 (32%), Positives = 249/539 (46%), Gaps = 105/539 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL + F + + MY+CGPTVY +HIG+ ++FD + R L Y E Sbjct: 22 IRVYNTLSKTKEPFLPLRAPRVGMYLCGPTVYAESHIGHMVGPVIFDTIKRYLTYSGYE- 80 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITD+DDK+I ++++ IP+ S I + T ++ + L H PR Sbjct: 81 -VTWVVNITDVDDKLIGKSKER--GIPM----SQIAVEMTADYLANLRELGVNQIDHLPR 133 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+PQ+I I ++ G AY + ++ FD + P YG S R +++Q+ G Sbjct: 134 ATDHMPQIIAFIGSLESKGFAYAIDGDVFFDVTKDPGYGQLSNRSVEDQQ-GEGGGAAAK 192 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGGLDL+FPH Sbjct: 193 KRNPGDFALWKSARPDEPFWDSPWGEGRPGWHIECSAMSHEILGETFDIHGGGLDLMFPH 252 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSN----------GNFITINELL 292 HENE AQS C W+HNG + +G+ KS+ ++ Sbjct: 253 HENERAQSTCC-HGAPMVKYWMHNGLMRAGEKGKVGGKSDRENAAAEAASVEEQASGKIS 311 Query: 293 ETKKFGG-----RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------- 337 +K GG RS IR +L T YR I + + L EA L + Sbjct: 312 RSKGAGGLADLIRSQTGERIRFFLLRTQYRSTIVYNEETLAEAGTSLEAFYRYFDRFAEI 371 Query: 338 ---------PQTSTSKGIIDPA--------------VLSALYNDLNTVSAIQALHKLARE 374 T + G DPA L+A+ +D NT +AI L R Sbjct: 372 TGDSFYDLSAATRRADGGFDPAGDALLTEIHAIREKFLAAMDDDFNTGAAISVLFDALRT 431 Query: 375 STKNHDLLPIFNAS--------------------AHILGI-----------EVCKEHLNK 403 ++ D + + + +LG+ E E L+ Sbjct: 432 LNRHIDANQLVAGADAKSPAVESLVKATSVIAELSRVLGLFAKPPATSGGDEADAELLDS 491 Query: 404 --NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ I + K +ER K +++ D IR +L G L D K T W++K Sbjct: 492 VVHLLINLRKEARER------KDYATGDAIRDRLADLGVALLDKKEG------TSWERK 538 >gi|120437076|ref|YP_862762.1| cysteinyl-tRNA synthetase [Gramella forsetii KT0803] gi|187629825|sp|A0M500|SYC_GRAFK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|117579226|emb|CAL67695.1| cysteinyl-tRNA synthetase [Gramella forsetii KT0803] Length = 494 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 252/490 (51%), Gaps = 54/490 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ +K+YN++ + F I+ N+ MYVCGPTVY H+GN R + FD+++R L++ Sbjct: 6 EQSLKLYNSMSGEKETFTPINEGNVGMYVCGPTVYSNVHLGNCRTFMSFDLVFRYLKHL- 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD +D+I ++AR E P+ + K T F Sbjct: 65 GYK-VRYVRNITDAGHLENDADSGEDRIAKKARLEQIE-PME-----VVQKYTVDFHNIL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRR 168 + P+ +P AT HI + I +I+ I+ +G AYEAN + FD +YG S R Sbjct: 118 NKFNNYPPSIEPTATGHIVEQIEIIKTILDNGFAYEANGSVYFDVVKFNKEHSYGKLSGR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 I++ TR + + K++P DF LWK++ P W SPW G PGWH+EC+ MS+ Y Sbjct: 178 AIEDMIANTRELSAQSDKRSPQDFALWKKAEPQHIMRWPSPWSDGFPGWHLECTVMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL FPHHE EIAQ A + N W+H L L G+KM+KS GNFI Sbjct: 238 LGEEFDIHGGGMDLKFPHHECEIAQGEAATG-KSPVNYWLHANMLTLNGKKMAKSTGNFI 296 Query: 287 TINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----- 330 ++ + +++ V+R +L HYR +DF+ RL +A Sbjct: 297 LPEQIFTGNNEVLTKAFSPNVVRFFVLQAHYRSILDFSSDALLGSEKGFNRLMDAYRSIE 356 Query: 331 --------EILLSKWPQT---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH 379 + LS+W Q+ + + P +++ L++ + T++ I+ ++ K Sbjct: 357 ELPASDKSDFNLSEWKQSCYDAMNDDFNSPILIAKLFDAVKTINGIKDGSIQITDTDKEE 416 Query: 380 DLLPIFNASAHILG-IEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLE 436 + ILG I+ E+ N+ +A IE L++ R K F+ +D IR +L+ Sbjct: 417 FKATMSAFMFDILGLIDAASENKNEGDKLAGTIELLIKLRADARNNKDFALSDQIRDRLQ 476 Query: 437 SKGFILEDYK 446 G L+D K Sbjct: 477 EIGIQLKDGK 486 >gi|256842437|ref|ZP_05547940.1| cysteinyl-tRNA synthetase [Parabacteroides sp. D13] gi|256736044|gb|EEU49375.1| cysteinyl-tRNA synthetase [Parabacteroides sp. D13] Length = 491 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 256/493 (51%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLNIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD YG S Sbjct: 113 MDALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESQGSVYFDVEKYNKDHKYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLNTTRALDGQDEKHNAIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + +++ A IR +L HYR +DF+ + L AE LS+ + Sbjct: 292 ITLEQFFTGDHPSLQQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLSRLMEAYGHL 351 Query: 340 -------TST--SKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLL 382 TST +KG+ + A+ +DLN+ I L R ++T + + L Sbjct: 352 MKLQPSATSTVDTKGLREK-CFEAMNDDLNSPIVISHLFDATRAINSVKDGKATLSEEDL 410 Query: 383 PIFNASAH-----ILGI--EVCKEHLN-KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ILG+ E N + S A++ L+ R K ++++D IR + Sbjct: 411 KELQEVFHLFLFDILGMKDEASASGSNYETFSKAVDLLLSIRQQAKANKDWATSDKIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTAMGFEIKDTKD 483 >gi|289178054|gb|ADC85300.1| Cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis BB-12] Length = 559 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 168/520 (32%), Positives = 249/520 (47%), Gaps = 97/520 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T ++ F+ I P + MYVCG TV HIG+ R + FD++ R G K Sbjct: 44 LKLYDTATHAVSRFEPIKPGEVGMYVCGATVQSAPHIGHIRAAVAFDIIRRWFERL-GYK 102 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKI+++A + ++F L LAPT++PR Sbjct: 103 -VTFIRNVTDIDDKILDKA------AAAGEDWWARAYHYEREFTHAYNELGVLAPTYEPR 155 Query: 125 ATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK-------- 169 AT HI M++LI+ II +GHAY E ++ FD +S P+YG + +K Sbjct: 156 ATGHIIDMVHLIERIIDNGHAYVIRDEHGELTGDVYFDVASWPHYGELTHQKQTAEVDEA 215 Query: 170 -IDEQKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRG 211 +MG V +KY+ K++P DF LWKR + P + W++P+G G Sbjct: 216 AAVADRMGPSVDASGDDKYNPADPADLSENKRDPRDFALWKRPKSTDPADARWKTPFGTG 275 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +TAN W+H+ ++ Sbjct: 276 RPGWHIECSAMSYRYLDGMFDIHGGGLDLRFPHHENEMAQTRAAGY--RTANRWMHSAWV 333 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EAE Sbjct: 334 TAKGEKMSKSLGNGLSVPVVLAEHS----AW---VVRYALGSVQYRSMLEWSDQTLAEAE 386 Query: 332 I--------------LLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR 373 L + P T S + ++A+ +D+N A A+ R Sbjct: 387 AAYERIMNFIGHAADALGEQPSRDEITGVSADNLPVDFVAAMNDDVNVSRATAAIFTQIR 446 Query: 374 ES-------TKNHDLLPIFNASAHILGIEVCKEHLN----------------------KN 404 E N D A ++ + + L K Sbjct: 447 EGNTLLARLAGNADDADRTALRAALVNVRAMLDTLGLDPLASPWIDGGDEAGGDSSALKT 506 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ + R K K F+ AD IR L + G +ED Sbjct: 507 LGELVDAQLAARAEARKNKDFAKADQIRDALAAAGITIED 546 >gi|313228816|emb|CBY17967.1| unnamed protein product [Oikopleura dioica] Length = 636 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 153/447 (34%), Positives = 225/447 (50%), Gaps = 54/447 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+K+ N+L R EF+ D ++ Y CGPTVYD +H+G+AR + FD++ R+LR Y+G Sbjct: 20 KLKVNNSLTRSKDEFRTADGKTVKWYSCGPTVYDHSHMGHARSYVSFDIIRRILRDYFGY 79 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y NITDIDDKII+R+ ++ N + +++ +D L P Sbjct: 80 D-VFYQINITDIDDKIIKRS-----TVTDNSIFDALPRYWEKKYFEDMQALNIEDPDCLT 133 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIF-----DTSSIPNYG-----SFSRRKIDEQ 173 R + ++P+++ ++ II HG+AYE+N + F D+SS Y + R+ + Sbjct: 134 RVSEYVPEIVTFVEKIIEHGYAYESNGSVYFKVDHFDSSSNHYYAKLVPEAVGNREALAE 193 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G+ K++ +DF LWK S P EP W+SPWG+GRPGWHIECS M+S +GK DI Sbjct: 194 GEGSLAAAASEKRSESDFALWKNSKPGEPSWDSPWGKGRPGWHIECSVMASDIMGKTMDI 253 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+DL FPHH+NE+AQS + ++H G L + G KMSKS NFITI E L Sbjct: 254 HSGGVDLKFPHHDNELAQSEAYHANDNWVQYFLHTGHLTIAGCKMSKSLKNFITIKEAL- 312 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---------------------EI 332 KK R IRL+ L+ + + +D++ L +A + Sbjct: 313 -KKNSARQ-----IRLSFLLHAWDKTLDYSDNTLADAVQYEKAISEFFANIKAALLNDDG 366 Query: 333 LLSKW--PQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKLARESTK------NHDLL 382 +L KW P+ + V L ++LNT A AL + + K N D Sbjct: 367 ILKKWGAPEKDLHAEFMAAQNDVHDKLCDNLNTAGACLALKDIVSATNKYLAKQENPDFK 426 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAI 409 + N ++ I C LN I Sbjct: 427 LLRNVGTYVTKIMKCFGCLNSEDQIGF 453 >gi|145330001|ref|NP_001077986.1| SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding [Arabidopsis thaliana] gi|330253409|gb|AEC08503.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] Length = 401 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 203/386 (52%), Gaps = 64/386 (16%) Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 +L CL P+ QPR ++HIPQ+I LI+ I+ +G+AY+ + +I F P YG S RK+++ Sbjct: 3 QLQCLDPSVQPRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLED 62 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G RV KK+PADF LWK + EP WESPWGRGRPGWHIECSAMS+ YLG FD Sbjct: 63 NRAGERVAVDTRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFD 122 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANI--WIHNGFLNLEGRKMSKSNGNFITINE 290 IHGGG+DL+FPHHENEIAQSC A ++NI WIHNGF+ ++ KMSKS GNF TI + Sbjct: 123 IHGGGMDLVFPHHENEIAQSCAAC---DSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQ 179 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT--------------VQRLTEAEILLSK 336 +++ + +RL ++ THYR PI+++ Q L + E L + Sbjct: 180 VIDL-------YHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGE 232 Query: 337 WPQT-----------------------STSKGIIDPAVLSALYNDLNTVSAIQALHKLAR 373 T S S ++ P L+A+ L T++ + K + Sbjct: 233 KDSTFENGSVPSDTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIHTRKGKK 292 Query: 374 ESTKNHDLLPIFNASAHILGI------------EVCKEHLNKNISIAIEKL---VQERLI 418 ++ + L + +L I E KE K + E + VQER Sbjct: 293 QARREESLKALETTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQRVQERTD 352 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 K K++ +D IRK L G L D Sbjct: 353 ARKNKEYERSDAIRKDLAKVGIALMD 378 >gi|84498461|ref|ZP_00997231.1| cysteinyl-tRNA synthetase [Janibacter sp. HTCC2649] gi|84381204|gb|EAP97088.1| cysteinyl-tRNA synthetase [Janibacter sp. HTCC2649] Length = 465 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 237/466 (50%), Gaps = 56/466 (12%) Query: 17 EFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID 76 +F + P + +Y+CG T HIG+ R + FDVL R L +G V VRN+TD+D Sbjct: 3 DFVPLQPGRVGIYICGLTTQAPPHIGHVRFAVAFDVLRRWLVRGHGLD-VALVRNVTDLD 61 Query: 77 DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLI 136 DKI+ ++ + + ++ +N + T L L PT++PRA HI +M+ LI Sbjct: 62 DKILRKSAES------GEDWFALSYRNEVATSEALTLLGVLPPTYEPRAMGHITEMVELI 115 Query: 137 QNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193 + +I +GHAY A + ++ FD S P YG + +KID+ + K++P DF L Sbjct: 116 EVLIANGHAYAAEDGSGDVYFDVRSWPAYGEVTNQKIDDMAAAEDADPR-GKRDPRDFAL 174 Query: 194 WKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 WK EP W +PWGRGRPGWH+ECSAM+ YLG FDIHGGG+DL FPHHENE A Sbjct: 175 WKGRKDGEPETASWPTPWGRGRPGWHLECSAMARKYLGDAFDIHGGGVDLRFPHHENEQA 234 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV-IRL 309 QS A A++W+HN ++ + G KMSKS GN + I+E+ + + P+ +R Sbjct: 235 QSRAAGL--PFASLWMHNAWVTISGEKMSKSLGNSLLIHEVTKKAR--------PLAVRY 284 Query: 310 AMLMTHYREPIDFTVQRLTEAEILLSK---------WPQ---TSTSKGIIDPAVLSALYN 357 + HYR I+F L EAE + + P T T + + A+ + Sbjct: 285 YLTAAHYRSMIEFHEGSLAEAEAAVDRIEGFLRRALGPDSAVTPTGDEKLPVEFVEAMDD 344 Query: 358 DLNTVSAIQALHKLAR---------ESTKNHDLLPIFNASAHILGIE------VCKEHLN 402 DL A+ A+H E+ +L + A ILG+ ++ + Sbjct: 345 DLGVSGALAAIHDTVTQGNTALDDGENDTARELAALVIAMTDILGVNPLDPAWAGADNSS 404 Query: 403 KNISIAIEKLVQERLI----LLKMKKFSSADYIRKQLESKGFILED 444 + A++ LV ERL + ++++D IR QL S G +ED Sbjct: 405 SDAQSALDALVSERLAARTSARSARDYATSDAIRDQLISAGITIED 450 >gi|327312789|ref|YP_004328226.1| cysteine--tRNA ligase [Prevotella denticola F0289] gi|326946352|gb|AEA22237.1| cysteine--tRNA ligase [Prevotella denticola F0289] Length = 495 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 181/504 (35%), Positives = 253/504 (50%), Gaps = 77/504 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I ++ MYVCGPTVY H+G+ARP I FD+L+R LR+ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLRHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD +YG S R Sbjct: 114 ALNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSIYFDVEKYDKDHHYGILSGRN 173 Query: 170 IDEQKMGTR----VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 + + +R V EK+ N ADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 174 LTDMINNSRELAGVGEKH---NQADFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGR 230 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + ++ W+HN + + G+KM KS GN Sbjct: 231 KYLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVKYWMHNNMITINGQKMGKSLGN 289 Query: 285 FITINELLETKKFGGRS------WPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL----- 333 FIT+ + F GR + IR +L HYR +DF+ + L AE Sbjct: 290 FITLEQF-----FTGRHETLMQPYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLM 344 Query: 334 -----LSKWPQTSTSKG--------------------IIDPAVLSALYNDLNTVSAIQAL 368 L++ ++ S G ++ PAV+S L+ + V+ I Sbjct: 345 NGIEDLARIQASAASDGNTGKFVSAFRKKCYEAMNDDLMTPAVISELFEACHLVN-ILID 403 Query: 369 HKLARESTKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKM----K 423 HK + +L + A ILG++ + N A K+V L L K Sbjct: 404 HKAQISADDLKELTEAMHLFAFDILGLKNERSADNDAREEAYGKVVDMVLDLRAKAKAEK 463 Query: 424 KFSSADYIRKQLESKGFILEDYKN 447 ++ +D IR L + GF ++D K+ Sbjct: 464 NWAVSDQIRDALSAAGFQVKDTKD 487 >gi|301308608|ref|ZP_07214561.1| cysteine--tRNA ligase [Bacteroides sp. 20_3] gi|300833402|gb|EFK64019.1| cysteine--tRNA ligase [Bacteroides sp. 20_3] Length = 491 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 172/493 (34%), Positives = 256/493 (51%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLNIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD YG S Sbjct: 113 MDALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESQGSVYFDVEKYNKDHKYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLNTTRALDGQDEKHNAIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + +++ A IR +L HYR +DF+ + L AE LS+ + Sbjct: 292 ITLEQFFTGDHPSLQQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLSRLMEAYGHL 351 Query: 340 -------TST--SKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLL 382 TST +KG+ + A+ +DLN+ I L AR ++T + + L Sbjct: 352 MKLQPSATSTVDTKGLREK-CFEAMNDDLNSPIVISHLFDAARAINSVKDGKATLSEEDL 410 Query: 383 PIFNASAH-----ILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H ILG++ + + A++ L+ R K ++++D IR + Sbjct: 411 KELQEVFHLFLFDILGMKDEASAGGNSYETFGKAVDLLLSIRQQAKANKDWATSDKIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTAMGFEIKDTKD 483 >gi|255322247|ref|ZP_05363393.1| cysteinyl-tRNA synthetase [Campylobacter showae RM3277] gi|255300620|gb|EET79891.1| cysteinyl-tRNA synthetase [Campylobacter showae RM3277] Length = 462 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 243/472 (51%), Gaps = 52/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+++++RK EF+ + +R+YVCGPTVYD AH+G+A+ I FD+L R L G K Sbjct: 1 MQIFDSVKRKKVEFEPVKSDFVRIYVCGPTVYDDAHLGHAKSAISFDLLRRTLS-ELGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TDIDDKI+++ + S+ IT + + +D + L L P +P+ Sbjct: 60 -VKFVRNYTDIDDKILKKMSESGESLE------AITDRYIASYERDMSALNVLEPDVKPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + +MI I+ ++ +G AYE A++ I FDT+ Y S S K D + RV Sbjct: 113 ATQTLKEMIGYIEILLKNGFAYEIADDGIYFDTAKDAEYLSLS-GKFDTEANVARVESNL 171 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL--GKVF--DIHGGGLD 239 K++ DF+LWK E +ESP+GRGRPGWH EC AM +L G+ F DIH GGLD Sbjct: 172 QKEDKKDFVLWKFD---EKWYESPFGRGRPGWHTECVAMIKKHLSSGEKFEIDIHAGGLD 228 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ CA+ + A W+HNGF+ + KMSKS GN + + LE + G Sbjct: 229 LLFPHHENEAAQCRCAEH-KNLAKYWLHNGFIQVNNEKMSKSLGNSFFVKDALE-RNLG- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDP 349 +R ++ +HYR +F+ L A+ L K ++ Sbjct: 286 -----EAVRFYLISSHYRANFNFSEDDLNAAKKRLDKIYRLKKRVLGAAANLSANDKFKS 340 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-----------AHILGI---- 394 +SA+ +DLNT A+ ++ + R + D P A A +LGI Sbjct: 341 DFMSAMGDDLNTSKALASVDEFVRSANDELDANPKDKAKKSEIAANLELIARVLGILQVD 400 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E + ++ IE L+ +R K + +D IR L + G L D Sbjct: 401 VFEYFQFGVSDEKRAYIEDLINQRNEAKAAKNYELSDKIRDMLAANGISLMD 452 >gi|183601840|ref|ZP_02963209.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis HN019] gi|219682755|ref|YP_002469138.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis AD011] gi|241190331|ref|YP_002967725.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195737|ref|YP_002969292.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218725|gb|EDT89367.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis HN019] gi|219620405|gb|ACL28562.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis AD011] gi|240248723|gb|ACS45663.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250291|gb|ACS47230.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793318|gb|ADG32853.1| cysteinyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9] Length = 545 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 168/520 (32%), Positives = 249/520 (47%), Gaps = 97/520 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T ++ F+ I P + MYVCG TV HIG+ R + FD++ R G K Sbjct: 30 LKLYDTATHAVSRFEPIKPGEVGMYVCGATVQSAPHIGHIRAAVAFDIIRRWFERL-GYK 88 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT++RN+TDIDDKI+++A + ++F L LAPT++PR Sbjct: 89 -VTFIRNVTDIDDKILDKA------AAAGEDWWARAYHYEREFTHAYNELGVLAPTYEPR 141 Query: 125 ATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK-------- 169 AT HI M++LI+ II +GHAY E ++ FD +S P+YG + +K Sbjct: 142 ATGHIIDMVHLIERIIDNGHAYVIRDEHGELTGDVYFDVASWPHYGELTHQKQTAEVDEA 201 Query: 170 -IDEQKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRG 211 +MG V +KY+ K++P DF LWKR + P + W++P+G G Sbjct: 202 AAVADRMGPSVDASGDDKYNPADPADLSENKRDPRDFALWKRPKSTDPADARWKTPFGTG 261 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +TAN W+H+ ++ Sbjct: 262 RPGWHIECSAMSYRYLDGMFDIHGGGLDLRFPHHENEMAQTRAAGY--RTANRWMHSAWV 319 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EAE Sbjct: 320 TAKGEKMSKSLGNGLSVPVVLAEHS----AW---VVRYALGSVQYRSMLEWSDQTLAEAE 372 Query: 332 I--------------LLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR 373 L + P T S + ++A+ +D+N A A+ R Sbjct: 373 AAYERIMNFIGHAADALGEQPSRDEITGVSADNLPVDFVAAMNDDVNVSRATAAIFTQIR 432 Query: 374 ES-------TKNHDLLPIFNASAHILGIEVCKEHLN----------------------KN 404 E N D A ++ + + L K Sbjct: 433 EGNTLLARLAGNADDADRTALRAALVNVRAMLDTLGLDPLASPWIDGGDEAGGDSSALKT 492 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ + R K K F+ AD IR L + G +ED Sbjct: 493 LGELVDAQLAARAEARKNKDFAKADQIRDALAAAGITIED 532 >gi|225468795|ref|XP_002262997.1| PREDICTED: hypothetical protein, partial [Vitis vinifera] Length = 435 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 146/405 (36%), Positives = 209/405 (51%), Gaps = 67/405 (16%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 ++S+ Q+++ D T L CL+PTHQPR ++H+ Q+ +I II + AY + ++ F Sbjct: 15 LSSRFCQEYLDDMTDLHCLSPTHQPRVSDHMDQIKDMITQIINNDCAYTIDGDVYFAVDK 74 Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIE 218 PNYG S RK++ + G RV K+NPADF LWK + P EP W+SPWG GRPGWHIE Sbjct: 75 SPNYGRLSGRKLENNRAGERVAVDSRKRNPADFALWKAAKPGEPSWDSPWGPGRPGWHIE 134 Query: 219 CSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKM 278 CSAMS+HYL FDIHGGG+DLIFPHHENEIAQSC A + E + W+HNG + KM Sbjct: 135 CSAMSAHYLTFKFDIHGGGIDLIFPHHENEIAQSCAACQ-ESNVSYWMHNGHVTNNNEKM 193 Query: 279 SKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV-------------- 324 SKS GNF TI ++ + + +R +L THYR P+++++ Sbjct: 194 SKSLGNFFTIRQITDL-------YHPLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIY 246 Query: 325 QRLTEAEILLSKWPQTSTSKGIIDPAV-----------LSALYNDLNT------------ 361 Q L + E LS + + + I PA + + +DL+T Sbjct: 247 QTLRDCEDTLSLFQEVNGRNVCITPAAQDCIRTLQTDFQTKMSDDLSTPHILNASLQEAL 306 Query: 362 -------------------VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 +SA+++L +L +E +L + + A+ ++ K Sbjct: 307 RFINSCLNMLKKKQQKQQQLSAVESLTELGKEVKGVLSVLGLLSTLAYSEVLQQLKGKAL 366 Query: 403 KN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K I + L++ER + K K FS D IR L SKG L D Sbjct: 367 KRAGMIEDDVLHLIEERALARKNKDFSKGDQIRADLASKGIALMD 411 >gi|206900189|ref|YP_002251400.1| cysteinyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12] gi|226735053|sp|B5YAD0|SYC_DICT6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206739292|gb|ACI18350.1| cysteinyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12] Length = 465 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 241/465 (51%), Gaps = 46/465 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL ++ +F+ ++P + MY CGPTVY++AHIGN R I D+L R+L Y V Sbjct: 5 LYNTLTKRKEKFEPLNPPYVGMYTCGPTVYNYAHIGNLRTYIFEDILKRVL--IYNGYIV 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V NITD+ +DKI A++E S I T+ F +D +L Sbjct: 63 KHVMNITDVGHLTSDADEGEDKIEREAKKERRSA------WEIAEFYTEAFKRDLKKLNI 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L P +AT+HI I LI + G+ Y ++ I FDTS +P+YG + + ++ G Sbjct: 117 LEPDIWCKATDHIQDFIDLILILERKGYTYRTSDGIYFDTSKVPDYGKLAGQDLENLLPG 176 Query: 177 TRVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 RV KKNP DF LWK + + W+SPWG G PGWHIECSAMS+ YLG+ FDI Sbjct: 177 ARVEYNPEKKNPTDFALWKFSPKDVKRQMEWDSPWGVGFPGWHIECSAMSTKYLGQPFDI 236 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+D I HH NEIAQS A + A W+H FL + ++M KS GNFIT+++ LE Sbjct: 237 HCGGIDHIPIHHTNEIAQSEAA-YDKPMAKYWLHGEFLIMGEKRMGKSEGNFITLSD-LE 294 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------SKWPQTSTS-KG 345 K + S+ R L HYR P+ FT L A+ L K+P+ Sbjct: 295 EKGYHPLSY-----RYFCLTAHYRSPLKFTWSALEAAQRALFRLYENMKKYPKEEAKYDE 349 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-----HILGIEVCKEH 400 + A+ +DL+ A+ + E K+ L P + +LG+ + Sbjct: 350 KYEEEFHKAINDDLDMPKALA----ITWELVKDDKLAPEVKRATLLQFDKVLGLSLDNPP 405 Query: 401 LNKNISIAIE-KLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K KLV+ER + K K + AD IR++++++G+I+ED Sbjct: 406 EIKIEIPEEIWKLVEERELARKNKDWEKADRIREEIKNRGYIIED 450 >gi|296128532|ref|YP_003635782.1| cysteinyl-tRNA synthetase [Cellulomonas flavigena DSM 20109] gi|296020347|gb|ADG73583.1| cysteinyl-tRNA synthetase [Cellulomonas flavigena DSM 20109] Length = 481 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 187/333 (56%), Gaps = 26/333 (7%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++T + + +F + + +Y+CG TV H+G+ R + FDVL R LR Sbjct: 2 SLRLFDTGTQSVRDFVPLVEGEVGVYLCGATVQSPPHVGHVRSAVAFDVLVRWLRRSGAR 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT VRN+TDIDDKI+ +A +N + F L L P ++P Sbjct: 62 --VTMVRNVTDIDDKILAKA------AAAGRPWWAWALQNERAFASAYAALGVLPPDYEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT H+P M+ L+ ++ GHAY A ++ FD S YG+ + +++D+ T VPE Sbjct: 114 RATGHVPAMLELMDRLVERGHAYAAGPGDVYFDVRSWAEYGALTNQRVDDM---TDVPED 170 Query: 183 YH--KKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K++P DF LWK P EPG W++ +GRGRPGWH+ECSAM+ YLG+ FDIHGGG Sbjct: 171 AGSGKRDPHDFALWKAPKPGEPGTAAWQTRYGRGRPGWHLECSAMAHRYLGESFDIHGGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LDL FPHHENE AQS A A W+HNG++ G KMSKS GN + + +LE Sbjct: 231 LDLRFPHHENEQAQSRAAGY--GFARYWLHNGWVTQGGAKMSKSLGNGLLVTTVLEKA-- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 PA V+R A+ YR +++T L EA Sbjct: 287 -----PAVVVRYALTAVQYRSMLEWTDDTLAEA 314 >gi|212550657|ref|YP_002308974.1| cysteinyl-tRNA synthetase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229558615|sp|B6YQU1|SYC_AZOPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212548895|dbj|BAG83563.1| cysteinyl-tRNA synthetase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 492 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 173/496 (34%), Positives = 255/496 (51%), Gaps = 61/496 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK ++ IYNTL + FQ++ P + +YVCGPTVY H+G+ARP I FD+L+R L + Sbjct: 1 MKNQLFIYNTLTGRKELFQSLYPKRVGLYVCGPTVYGDPHLGHARPAITFDILFRYLMHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQE--HPSIPINDAISIITSKNTQQFV 108 V YVRNITD+ +DKI +AR E P + +++ + Sbjct: 61 --NYKVRYVRNITDVGHLTSDSDLGEDKIARKARLEDLEPMEVVQHYLNL--------YH 110 Query: 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSF 165 K L L P+ +P A+ HI + I LI+ I+ G+AYE+ + FD NYG Sbjct: 111 KTMDALNVLPPSIEPHASAHIIEQIQLIKEILEKGYAYESKGSVYFDVEKYNKKYNYGKL 170 Query: 166 SRRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMS 223 S + I + TR + + K+NP DF LWK+++ W SPW G PGWH+EC+ MS Sbjct: 171 SGQNIADMLNTTRKLDGQEGKRNPIDFALWKKASSKHIMQWISPWSNGFPGWHLECTTMS 230 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 YLG +FDIHGGG+DLIFPHHE EIAQ + E W+HN + + G+KM KS+ Sbjct: 231 RKYLGNLFDIHGGGMDLIFPHHECEIAQKVASTGYE-GVKYWMHNNMVTVNGQKMGKSSN 289 Query: 284 NFITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----- 337 NFI + +L T +S+ +R +L +HYR IDF+ + L ++ LS+ Sbjct: 290 NFINLEQLFNGTNPLLIQSYNPMTVRFFILQSHYRNTIDFSNKALQASKKGLSRLLEANN 349 Query: 338 ------PQTSTS----KGIIDPAVLSALYNDLNTVSAI-----------QALHKLAREST 376 QT+ S +G+ + ++ A+ +DLNT I AL K + +T Sbjct: 350 NIKQLTAQTTNSTVNIEGLRNKSI-EAMNDDLNTPIIISYLFEATRIVNSALAKQTQLTT 408 Query: 377 KNHDLLPIFNASAHILGIEVCKEHLNKNISI-----AIEKLVQERLILLKMKKFSSADYI 431 ++ L F + + E KN S A++ L+Q R+ + K + AD I Sbjct: 409 EDIQQLKDFFQLFLFNLLGIKDELKYKNTSYNSFAKAVDLLLQIRVQAKQEKNWIFADKI 468 Query: 432 RKQLESKGFILEDYKN 447 R +L GF ++D KN Sbjct: 469 RDELTVLGFEVKDTKN 484 >gi|325859814|ref|ZP_08172944.1| cysteine--tRNA ligase [Prevotella denticola CRIS 18C-A] gi|325482740|gb|EGC85743.1| cysteine--tRNA ligase [Prevotella denticola CRIS 18C-A] Length = 495 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 182/504 (36%), Positives = 251/504 (49%), Gaps = 77/504 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I ++ MYVCGPTVY H+G+ARP I FD+L+R LR+ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLRHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD +YG S R Sbjct: 114 ALNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSIYFDVEKYDKDHHYGILSGRN 173 Query: 170 IDEQKMGTR----VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 + + +R V EK+ N ADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 174 LTDMINNSRELAGVGEKH---NQADFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGR 230 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + ++ W+HN + + G+KM KS GN Sbjct: 231 KYLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVKYWMHNNMITINGQKMGKSLGN 289 Query: 285 FITINELLETKKFGGRS------WPAPVIRLAMLMTHYREPIDFTVQRLTEAE------- 331 FIT+ + F GR + IR +L HYR +DF+ + L AE Sbjct: 290 FITLEQF-----FTGRHETLTQPYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLM 344 Query: 332 --------ILLSKWPQTSTSK---------------GIIDPAVLSALYNDLNTVSAIQAL 368 I S +T K ++ PAV+S L+ + V+ I Sbjct: 345 NGIEDLACIQASAASDGNTGKFVSAFRQKCYEAMNDDLMTPAVISELFEACHLVN-ILID 403 Query: 369 HKLARESTKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKM----K 423 HK + +L + A ILG++ + N A K+V L L K Sbjct: 404 HKAQISADDLKELTEAMHLFAFDILGLKNERSADNDAREEAYGKVVDMVLDLRAKAKAEK 463 Query: 424 KFSSADYIRKQLESKGFILEDYKN 447 ++ +D IR L + GF ++D K+ Sbjct: 464 NWAVSDQIRDALSAAGFQVKDTKD 487 >gi|291519016|emb|CBK74237.1| cysteinyl-tRNA synthetase [Butyrivibrio fibrisolvens 16/4] Length = 475 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 239/480 (49%), Gaps = 51/480 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK K YNT R++ F+ + + MY CGPTVY FAHIGN R I+ D L + L Y Sbjct: 1 MKMDFKFYNTATRQVEVFKPNEEGKVSMYTCGPTVYHFAHIGNIRTYIMQDALIKSLEY- 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 V V NITD+ +DK++ A++EH ++ I T F KD Sbjct: 60 -AGYQVKRVMNITDVGHLSSDADTGEDKMVAGAKREHKTVME------IAKFYTDAFFKD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 + P ATN IP+ I++++ ++ G+AY A + FDTS + +Y FS Sbjct: 113 FDAVGNKRPDVVEPATNCIPEFIHMVEVLLEKGYAYVAGGNVYFDTSKLSDYYVFSSSVE 172 Query: 171 DEQ-KMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSS 224 E ++G R V E +KKN DF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KEALEVGVRDDVEEDTNKKNKTDFVLWFTKSKFEDQALKWDSPWGVGYPGWHIECSCISM 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +LG+ DIH GG+D IFPHH NE+AQS A K N W H+ LN + KMSKS G Sbjct: 233 KHLGEYMDIHCGGVDNIFPHHTNEVAQS-EAYLGHKWCNYWFHSNHLNDQSGKMSKSKGA 291 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-- 342 +T++ L E + + V R L +HYR+P+ F+ L +K + + Sbjct: 292 ILTVSVLQE------KGYDPLVYRFFCLQSHYRKPLVFSWDNLDNTVTAYNKLVKRVSEL 345 Query: 343 -SKGIIDPAVLS--------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 ++G +D AV S A+ NDLNT AI L+ + T + L + + +L Sbjct: 346 KAEGAVDEAVKSEFEEKFCEAVSNDLNTSMAITILYDALKADTSDATKLALVESFDKVLS 405 Query: 394 IEV---------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +++ ++ + I + R K K F++AD IR +L +KG ++D Sbjct: 406 LDLIGHAKALGEAGSSVDAELEAYINDAIARRAEAKKAKDFATADAIRDELLAKGVEIKD 465 >gi|167750381|ref|ZP_02422508.1| hypothetical protein EUBSIR_01355 [Eubacterium siraeum DSM 15702] gi|167656741|gb|EDS00871.1| hypothetical protein EUBSIR_01355 [Eubacterium siraeum DSM 15702] Length = 472 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 247/478 (51%), Gaps = 54/478 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L K EF + MY CGPTVY FAHIGN R I+ DVL + LRY + Sbjct: 1 MQLYNSLSHKKEEFVPNVEGKVNMYTCGPTVYHFAHIGNLRSYIMEDVLEKYLRYVGYD- 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V V NITD+ DDK+++ A++EH ++ I T F D T+L Sbjct: 60 -VKRVMNITDVGHLTSDGDTGDDKMLKGAKREHKTV------MEIAKYYTDAFFDDCTKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT+ I I +I ++I G+AYEA I FDTS + Y F+ K ++ Sbjct: 113 NIKRPDVVEPATHCIADFIKVISSLIKKGYAYEAGGNIYFDTSKLEKYYVFNDFKEEDLA 172 Query: 175 MGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +G R V E +K+N ADF+LW + E W+SPWG G PGWHIECS +S +LG+ Sbjct: 173 VGVREGVEEDGNKRNKADFVLWFTKSKFDDQELKWDSPWGVGYPGWHIECSCISMKHLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D FPHH NEIAQS A K N W H LN KMSKS G F+T++ Sbjct: 233 YLDIHCGGIDNAFPHHTNEIAQS-EAYLGHKWCNYWFHVHHLNTNSGKMSKSKGEFLTVS 291 Query: 290 ELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ-TSTS 343 LLE+K + PVI R L++HYR+ + F+ + L A E L+++ Q Sbjct: 292 -LLESKGYD------PVIYRFFCLLSHYRKSLVFSYENLDNAKGAYEKLVARIAQLLKAE 344 Query: 344 KGIIDPAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 +G +D A +A+ ND+NT AI AL+ + + T L + +L + Sbjct: 345 QGEVDKAAYDKLREGFTAAMDNDINTSLAITALYDVLKADTTPATKLALIADFDKVLSLS 404 Query: 396 VCKEHLNKN---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ N + I +L ++R K K F+ AD +R ++ + G+ +E+ Sbjct: 405 LIEKAKAVNEKPTDTAEELPAEILELAEQRKQARKDKNFALADELRDKITAMGYTVEE 462 >gi|240146533|ref|ZP_04745134.1| cysteine--tRNA ligase [Roseburia intestinalis L1-82] gi|257201344|gb|EEU99628.1| cysteine--tRNA ligase [Roseburia intestinalis L1-82] gi|291535114|emb|CBL08226.1| cysteinyl-tRNA synthetase [Roseburia intestinalis M50/1] gi|291539640|emb|CBL12751.1| cysteinyl-tRNA synthetase [Roseburia intestinalis XB6B4] Length = 471 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 169/477 (35%), Positives = 245/477 (51%), Gaps = 49/477 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K + YNTL RK+ + I MY CGPTVY FAHIGN R I+ DVL + LRY Sbjct: 1 MENKFQFYNTLTRKVETVIPHEDGKIGMYTCGPTVYHFAHIGNLRSYIMEDVLEKSLRYV 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V V NITD+ +DK+++ A++EH ++ I T F D Sbjct: 61 GYD--VKRVMNITDVGHLSSDADTGEDKMLKGAKREHKTV------MEIAKYYTDAFFSD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 +L P ATN IP+ I++I+ ++ G+AY A + FDTS + +Y FS + Sbjct: 113 CKKLNIKTPDVVEPATNCIPEFIHMIEVLLEKGYAYVAGGNVYFDTSKLDDYYVFSSQSE 172 Query: 171 DEQKMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSH 225 E +G R V E +KKN DF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KELLVGVRDDVEEDVNKKNKNDFVLWFTKSKFEDQALKWDSPWGVGYPGWHIECSCISMK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGN 284 +LG+ DIH GG+D IFPHH NEIAQS + T W H LN + KMSKS G+ Sbjct: 233 HLGEYVDIHCGGVDNIFPHHTNEIAQS--ESYLGHTWCKYWFHVQHLNDKSGKMSKSKGD 290 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL---TEAEILLSKWPQTS 341 F+T++ L E + + V R+ L +HYR+P++F+ + L A L+K Sbjct: 291 FLTVSLLQE------KGYDPIVYRMFCLQSHYRKPLEFSYEVLDNMAAAYKKLTKRIAEL 344 Query: 342 TSKGIIDPAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 +G + A+ NDLNT AI ++ L ++ + L + N +L Sbjct: 345 KDEGTVQQDKFDAYKAKFEDAISNDLNTSMAITIIYDLLKDDMNDKTKLALINDFDKVLS 404 Query: 394 IEV------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + KE ++ + + ++ER K K F+ AD IR +L +KG +L+D Sbjct: 405 LNLTTAQADAKEEIDAELESYVLAKIEERKEAKKAKDFAKADAIRDELLAKGIVLKD 461 >gi|29840595|ref|NP_829701.1| cysteinyl-tRNA synthetase [Chlamydophila caviae GPIC] gi|33301685|sp|Q821U7|SYC_CHLCV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29834945|gb|AAP05579.1| cysteinyl-tRNA synthetase [Chlamydophila caviae GPIC] Length = 476 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 167/482 (34%), Positives = 251/482 (52%), Gaps = 56/482 (11%) Query: 2 KKKIKIYNTLERKITEF-QAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 K+K+ +YNT+ R F + DP +++Y CGPTVYD+AHIGN R + D+L R L ++ Sbjct: 8 KQKLYLYNTVSRAKELFCSSNDP--VKLYTCGPTVYDYAHIGNFRTYVFEDLLKRTLLFF 65 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V ++ NITD+DDK + A ++ N ++ T+ Q F +D L L Sbjct: 66 --GYSVRHIMNITDVDDKTLAGACKK------NISLDAYTAPYIQAFFEDVASLNILPAD 117 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 P AT++IPQMI I ++ G AY ++ + F P YG S+ K+ + + +RV Sbjct: 118 VYPHATHYIPQMIEAIAKLLDEGIAYVGQDSSVYFSIEKFPTYGKLSQLKLQDLQCCSRV 177 Query: 180 P-EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 ++Y K+N +DF+LWK G WESP+G+GRPGWH+ECS M+ LG DIH Sbjct: 178 SSDEYDKENLSDFVLWKAYEEKRDGHIYWESPFGKGRPGWHLECSIMAMELLGASIDIHA 237 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+D IFPHHENEIAQS + + W+H+ L ++G+KMSKS GNF T+ LL+ Sbjct: 238 GGVDNIFPHHENEIAQSESLSH-QPFSRYWLHSEHLLVDGKKMSKSLGNFFTLRNLLD-- 294 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-----------SKWPQTS--- 341 R + IR +L +HYR ++FT + L L S +P++S Sbjct: 295 ----RGFSGEEIRYMLLQSHYRMQLNFTEEGLLACRQALKRLRDFISRIESVYPESSHIS 350 Query: 342 -----TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH------ 390 +G + A A+ NDLN +A+ AL ++ D A A+ Sbjct: 351 EDMQQHGEGFLQ-AFSEAIANDLNIAAALAALFDFIHQTNSTIDQANFTQADANYVLDIM 409 Query: 391 -----ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ L I +++LV+ER + K + AD +R Q+ S G+ +ED Sbjct: 410 KRINTVLGVIPFSADL--EIPDHVKQLVEEREVARSEKNWKQADALRDQVASLGYSIEDA 467 Query: 446 KN 447 K+ Sbjct: 468 KS 469 >gi|187735526|ref|YP_001877638.1| cysteinyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425578|gb|ACD04857.1| cysteinyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 471 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 243/480 (50%), Gaps = 54/480 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T R + +D +R Y CGPTVY HIGN R ++ DV R+L G Sbjct: 2 LHLYDTRTRTAQDISPMDGKTLRFYCCGPTVYGPTHIGNFRTFVMQDVFRRVLEL--GGV 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 T++RN+TD+DDK I +++ S+ + T+ F +D L CL P +P Sbjct: 60 PTTHIRNLTDVDDKTIRDSQKAGVSL------AEFTAGWADLFHRDCAALNCLPPHAEPS 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFS---RRKIDEQKMG-TRV 179 A HIP+ I ++Q ++ GHAY + + F SS P YG S R++D K TR Sbjct: 114 AVGHIPEQIRMVQTLVEKGHAYVSEDGSVYFRISSFPEYGRLSHLDERELDLGKTANTRS 173 Query: 180 -PEKYHKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 ++Y K + ADF+LWK P + W SPWG GRPGWH+ECSAM Y G FD+H G Sbjct: 174 NADEYEKDSVADFVLWKSRRPEDGNNFWPSPWGEGRPGWHLECSAMIHKYFGNDFDLHSG 233 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+DL+FPHHENE+AQS CA A +W H L ++G KMSKS GN T+ +L K Sbjct: 234 GVDLVFPHHENEVAQSRCACG-GGFARLWFHITHLLVDGGKMSKSLGNMYTLADL---DK 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSK---- 344 G R +R + +YR P++FT+ L +A+ L++ + + T Sbjct: 290 LGHRP---SAVRYVLAGGYYRRPLNFTLSSLEDAKAALNRLSKFDMQLRNASGTDSVPSY 346 Query: 345 ----------GIIDPAVLSALYNDLNTVSAI----QALHKLARESTKNHDLLPIFNASAH 390 GI PA +L +DLNT A+ A+ K S + + NA Sbjct: 347 EEFCAAFPELGIFQPA-WDSLNDDLNTPEALGHVFSAIRKADIPSLSPEEAARLRNAFHF 405 Query: 391 IL---GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IL GI + E + I L +R + + ++ AD +R ++ + G++++D K+ Sbjct: 406 ILAAFGI-ILPEEGQEEAPEEIRTLADQRWQAKQNRDWTEADRLRAEVAALGWVIKDRKD 464 >gi|88803012|ref|ZP_01118539.1| cysteinyl-tRNA synthetase [Polaribacter irgensii 23-P] gi|88781870|gb|EAR13048.1| cysteinyl-tRNA synthetase [Polaribacter irgensii 23-P] Length = 492 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 174/491 (35%), Positives = 253/491 (51%), Gaps = 56/491 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++K+YN+L +K +F+ I + MYVCGPTVY AH+GN R + FD+++R L + Sbjct: 6 ENQLKVYNSLSKKKEDFKPITAGYVGMYVCGPTVYSNAHLGNVRTFMFFDIVFRYL-LHL 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD +D+I ++AR E P+ + + T F Sbjct: 65 GYK-VRYVRNITDAGHLENDADEGEDRIAKKARIEKIE-PME-----VVQRYTVDFHNVL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRR 168 L P+ +P AT HI + I +I++I+ G AYE N + FD + +YG S R Sbjct: 118 KNYNFLPPSIEPTATGHIVEQIEMIKDIVNKGFAYEVNGSVYFDVLAYNKKEHYGILSGR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 K+++ TR + + KKNP DF LWK++ W SPW G PGWH+ECS MS+ Y Sbjct: 178 KVEDLVHNTRSLDGQSDKKNPQDFALWKKAEEKHIMRWPSPWSEGFPGWHLECSVMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 LG+ FDIHGGG+DL FPHHE EIAQS C+ + N W+H L L G+KM+KS GNF Sbjct: 238 LGEQFDIHGGGMDLKFPHHECEIAQSKTCSGKT--PVNYWMHTNMLLLNGQKMAKSTGNF 295 Query: 286 ITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFTV----------QRLTEAEILL 334 I NE+L + +++ A V+R L +YR +DF+ +L EA +L Sbjct: 296 ILPNEILTGENDILPKAFSASVVRFFNLQANYRSILDFSGAALEASEKGHSKLMEAVNVL 355 Query: 335 SKWPQTSTSKGIID---PAVLSALYNDLNTVSAIQALH---------KLARESTKNHDL- 381 +S S ++ + +A+ +D NT I L K +ES DL Sbjct: 356 ENLATSSVSSFDVEKWKKSCYAAMNDDFNTPVLISYLFEAVKIINQIKEQKESITATDLG 415 Query: 382 -----LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 L F L EV H K + +E L++ R + K+++ +D IR +L Sbjct: 416 VLQETLNTFVFDVLGLTNEVLSHHSEKTNGV-VELLIKLRKEARENKEWALSDQIRDELI 474 Query: 437 SKGFILEDYKN 447 G L+D K+ Sbjct: 475 ELGIQLKDGKD 485 >gi|41614851|ref|NP_963349.1| hypothetical protein NEQ055 [Nanoarchaeum equitans Kin4-M] gi|61216257|sp|Q74MI1|SYC_NANEQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|40068575|gb|AAR38910.1| NEQ055 [Nanoarchaeum equitans Kin4-M] Length = 457 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 241/474 (50%), Gaps = 61/474 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGEKC 65 +YNTL + F ++ ++MY CG T YD AH+G+ R +V D+L R+LR+ Y + Sbjct: 4 LYNTLTSRKEAFIPLEEPFVKMYTCGVTPYDKAHVGHLRTYLVTDLLRRILRFLGYYDIA 63 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 VT N TDIDDKII+++++ +N I +N + L L PR Sbjct: 64 VT---NFTDIDDKIIKKSQE------LNKDWKEIVEENIKYVFDVLKELKVLPFYVYPRV 114 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS----RRKIDEQKMGTRVPE 181 T HI + +++++ G+AY+ I FD P YG S +++ +++K Sbjct: 115 TYHIDDIANAVKSLLDRGYAYKGKYSIYFDVDKYPYYGQLSGIKSKKEWEQEKHLLE--- 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNP DF LWK P EP W + G GRPGWHIECS MSS YLG+ FDIH GG DLI Sbjct: 172 --DKKNPYDFALWKFKQPGEPYWNTIVGEGRPGWHIECSVMSSKYLGERFDIHLGGSDLI 229 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + W+H G + + G KMSKS GN I E + + Sbjct: 230 FPHHENEIAQSETLYNVHPWVRYWVHIGMVQINGEKMSKSLGNIIEAKEFI-------KK 282 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-STSKGIIDPAV--------- 351 + +R +L THYR+P+D + + + +A+ + K +T+K I++ V Sbjct: 283 YKPEFVRFFLLSTHYRKPLDISEENIEQAQTIYKKLTDAYNTAKSIVENEVSYRFDKDVR 342 Query: 352 ---------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 + A +D+NT +AI +L+K+ +N + PI + E N Sbjct: 343 IILDYYREMIKAFLDDMNTPTAIASLNKIVSIFNQNPE-YPIAYLTLRAF------EDFN 395 Query: 403 KNISIAIEKLVQ---------ERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + +++ EK + R +L + K++ AD IR L+ KG ++DYK+ Sbjct: 396 RIMNVWFEKPIDLDIINEIIEIRNMLRREKQYELADKIRDILQKKGIKIKDYKD 449 >gi|149194602|ref|ZP_01871698.1| cysteinyl-tRNA synthetase [Caminibacter mediatlanticus TB-2] gi|149135346|gb|EDM23826.1| cysteinyl-tRNA synthetase [Caminibacter mediatlanticus TB-2] Length = 464 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 170/482 (35%), Positives = 255/482 (52%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY++ ++ EF I +R+YVCGPTVYD AH+G+AR I FD+L R L G K Sbjct: 1 MKIYDSHLKEKVEFIPIKEKEVRIYVCGPTVYDDAHLGHARSSISFDLLRRTLE-CLGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII++ + S + IT +++++D L +P+ Sbjct: 60 -VTFVKNFTDIDDKIIKKMNETKKS------LKEITEYYIKRYLEDMDALNVKRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M +IQ ++ G+AY+ N +I FD S Y S + D++ + RV E Sbjct: 113 ATQSLEAMFEIIQILLDKGYAYKLPNGDIYFDVSKDEEYCKLSNKCQDDEVV-HRV-EIE 170 Query: 184 HKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLG----KVFDIHGGGL 238 KKNPADF LWK + ++SP+G+GRPGWHIECSAM ++ DIHGGG Sbjct: 171 GKKNPADFALWKACKGESDVCFDSPFGKGRPGWHIECSAMIKKHIAYDGEYEIDIHGGGA 230 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQS CA A W+HNGF+ + G KMSKS GN I + L Sbjct: 231 DLFFPHHENEEAQSHCA-YGGHLAKYWMHNGFVQINGEKMSKSLGNSFFIKDAL------ 283 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPA--- 350 + + V+R ++ THYR P++F+ + L ++ L K + SK D + Sbjct: 284 -KHYSGEVLRFYLMSTHYRAPLNFSEEDLIASKKRLDKLYRLKKRIYGVSKKQQDKSFEE 342 Query: 351 -VLSALYNDLNTVSAIQALHKLARESTKNHDLLP---------IFNAS--AHILGI---- 394 +L+A+ +DLN A+ + + +++ +N D P + N +LG+ Sbjct: 343 NLLNAMSDDLNISKALAVVDEFIKDANENLDKNPKDKILKQKIVSNIEFINKLLGVGGSD 402 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E + +++ IE+L+ +R K K F AD IR +L+ G ++D N + Sbjct: 403 AYEYFQAGIDEETKKKIEELIAKRSEAKKEKNFELADKIRDELKEMGISIQDTPNGTKWE 462 Query: 453 RM 454 R+ Sbjct: 463 RV 464 >gi|20089634|ref|NP_615709.1| cysteinyl-tRNA synthetase [Methanosarcina acetivorans C2A] gi|24418697|sp|Q8TSP6|SYC_METAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|19914556|gb|AAM04189.1| cysteinyl-tRNA synthetase [Methanosarcina acetivorans C2A] Length = 473 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 172/485 (35%), Positives = 249/485 (51%), Gaps = 59/485 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F+ + I +Y CGPTVY+ HIGN R ++ D + R L Y G + Sbjct: 2 LQVYNTLTREKEIFKPVKEGEISIYACGPTVYNMPHIGNYRTFLMTDNVLRALEYL-GYR 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDK I ++ + + D T K T +F K L PR Sbjct: 61 -VKLVMNITDIDDKTIRDSKA--AGMTLKD----FTDKYTAEFFKGLDMLNIKRAFAYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 AT ++ MI L + +I G AYE + + + S P YG SR D +G V ++Y Sbjct: 114 ATENVDGMIELARKLIEKGLAYEKDGSVYYRISGFPEYGKLSRLNFDNILIGASVDVDEY 173 Query: 184 HKKNPADFILWKRSTP--MEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K NP DF L K STP +E G ++SPWG+ RPGWHIECS M+ + G DIH GG+D Sbjct: 174 DKDNPRDFALLKASTPEEIERGIYYDSPWGKIRPGWHIECSVMAMNSFGPTLDIHTGGVD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS A + WIH L +EG KMSKS N T+ E++E K+GG Sbjct: 234 LIFPHHENEIAQSEGATG-KPFVCTWIHGEHLIVEGEKMSKSKRNVFTLPEIVE--KYGG 290 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KGIID---PAV 351 V+R L HYR+ +D++ A+ + +T + KG D P Sbjct: 291 E-----VVRFMFLSVHYRKKLDYSEAFAENAKNNYLRLKETLDNLEFSLKGADDKSYPGD 345 Query: 352 LS--------------ALYNDLNTVSAIQALHKLAR------ESTKNHDLLP----IFNA 387 L AL +D NT A+ +L+R E+ KN +L ++ Sbjct: 346 LETLKALPELETQFRHALEDDFNTPRALTVFRELSRTANLYLEAGKNRKVLEKVHTLYRK 405 Query: 388 SAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + +LG+ + KE + + + +LV+ER K K + ++D +R+++ + G+I++D Sbjct: 406 FSDVLGLFAQAGKEEIPEEVF----RLVEEREAARKKKDWGTSDTLREKIRTLGYIIQDK 461 Query: 446 KNPDN 450 K N Sbjct: 462 KEGPN 466 >gi|154175222|ref|YP_001408206.1| cysteinyl-tRNA synthetase [Campylobacter curvus 525.92] gi|166200139|sp|A7GYB4|SYC_CAMC5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|112802485|gb|EAT99829.1| cysteinyl-tRNA synthetase [Campylobacter curvus 525.92] Length = 460 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+++++++ F+ I +Y+CGPTVYD AH+G+A+ + FD+L R+L E Sbjct: 1 MQIFDSVKKQKVAFEPIKSGKASIYLCGPTVYDDAHLGHAKSAVSFDLLRRVLLELGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TDIDDKI+++ S + IT + + D + L + P +P+ Sbjct: 60 -VKFVRNYTDIDDKILKKMSDTGKS------LEEITQRYIASYEADMSALNVMQPDIKPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + +I IQ ++ G AYE + I FDT Y S S K + + RV Sbjct: 113 ATQCLEAIINYIQKLVDKGVAYELKDGIYFDTGKDARYFSLS-GKDNNTDLIARVQSNDE 171 Query: 185 KKNPADFILWKRSTPMEPGW-ESPWGRGRPGWHIECSAMSSHYLGK----VFDIHGGGLD 239 K++ DF+LWK + W ESP+GRGRPGWH EC AM YL DIH GG+D Sbjct: 172 KRDEKDFVLWK----FDDKWYESPFGRGRPGWHSECVAMIKQYLSNDGEYEIDIHAGGID 227 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ CA+ +K A W+HNGF+ + KMSKS GN + + L Sbjct: 228 LLFPHHENEAAQCRCAEH-KKLAKYWMHNGFIKVNNEKMSKSLGNSFFVKDAL------- 279 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDP----A 350 +S P +R ++ +HYR +++ + L A+ L K + S G +P + Sbjct: 280 KSVPGEALRFYLIASHYRAHFNYSQEDLFAAKKRLDKIYRLKKRVLGVSAGTCEPNFKAS 339 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLP------------------IFNASAHIL 392 VL AL +DLNT A+ ++ + + + DL P +F A + Sbjct: 340 VLEALSDDLNTSKALASVDEFVKSANDGLDLDPKNKALKAQIAANLEFITRVFGVGA-MD 398 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G E + ++ + I+ L+ ER K + FS AD IRK+L + + D Sbjct: 399 GFEYFQFGVSDDEKAKIKALLDERTQAKKERNFSKADEIRKKLNAMDIAIMD 450 >gi|86141205|ref|ZP_01059751.1| cysteinyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217] gi|85831764|gb|EAQ50219.1| cysteinyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217] Length = 495 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 247/488 (50%), Gaps = 54/488 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K++IK+YN+L F+ + N+ MYVCGPTVY H+GN R + FD+++R L++ Sbjct: 7 KQEIKVYNSLSGSKETFKPLLEGNVGMYVCGPTVYSNVHLGNVRTFMSFDMIFRYLKHL- 65 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD +DKI ++AR E P+ + + T F Sbjct: 66 GYK-VRYVRNITDAGHLTDDADEGEDKIAKKARLEQIE-PME-----VVQQYTIDFHTIL 118 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRR 168 + CL P+ +P AT HI + I +I+ II +G AYE N + FD + +YG S R Sbjct: 119 QKFNCLPPSIEPTATGHIIEQIEIIKEIIDNGFAYEKNGSVYFDVLKFNESHDYGKLSGR 178 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 +++ TR + + KKN DF LWK++ P W SPWG G PGWH+EC+AMS+ Y Sbjct: 179 NLEDMIANTRELTAQSEKKNAQDFALWKKAEPQHIMRWPSPWGDGFPGWHLECTAMSTKY 238 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL FPHHE EIAQS ++ + N W+H L L G+KMSKS+GN I Sbjct: 239 LGEQFDIHGGGMDLKFPHHECEIAQSEASNG-KNPVNYWLHANMLTLNGKKMSKSDGNNI 297 Query: 287 TINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLS 335 ++ F + + V R ++ HYR +DF+ RL EA LL Sbjct: 298 FPAQIFTGDSPFLTKGFSPSVARFFVMQAHYRSVLDFSNDALLASEKGFNRLMEAVNLLE 357 Query: 336 KWPQTSTSK---GIIDPAVLSALYNDLNTVSAIQALHKLAR------------ESTKNHD 380 P + S I + A+ +D N+ I L + A+ T D Sbjct: 358 ALPTSEKSSIDVEIWKQSCYDAMNDDFNSPILIAQLFEAAKFIHQIKDSKAAITQTDLED 417 Query: 381 LLPIFNASA-HILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 A +LG+E E ++ AIE L+Q R K F+++D IR QL Sbjct: 418 FKTTIKAFVFDVLGLEDVNAAAEANTDKLNGAIELLIQLRKEARANKDFATSDQIRDQLL 477 Query: 437 SKGFILED 444 G L+D Sbjct: 478 ELGIQLKD 485 >gi|282880438|ref|ZP_06289145.1| cysteine--tRNA ligase [Prevotella timonensis CRIS 5C-B1] gi|281305541|gb|EFA97594.1| cysteine--tRNA ligase [Prevotella timonensis CRIS 5C-B1] Length = 496 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/497 (33%), Positives = 248/497 (49%), Gaps = 59/497 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ +YNTL RK F+ + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLFVYNTLTRKKELFEPLHAPNVGMYVCGPTVYGDPHLGHARPSITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L L P+ +P AT HI + L++ I+ +G+AYE+N + FD +YG S Sbjct: 113 MEALNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSVYFDIEKYNKDHHYGILSG 172 Query: 168 RKIDEQKMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +D+ +R + K+N DF LWKR+ P W SPW G PGWH EC+AM Sbjct: 173 RNLDDVINNSRELDGVGEKRNQVDFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DL+FPHHE EIAQ+ A + ++ W+HN + + G+KM KS GNF Sbjct: 233 YLGNHFDIHGGGMDLVFPHHECEIAQA-VASQGDQMVRYWMHNNMITINGKKMGKSLGNF 291 Query: 286 ITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+ + + +P+ IR +L HYR +DF+ ++RL L Sbjct: 292 ITLEQFFTGEHDSLEQPYSPMTIRFFILSAHYRGTVDFSNEALQASQKGLERLMNGVHDL 351 Query: 335 SKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQALHK--------LARESTKNH 379 + +TS V A+ +DL T I L + L + + Sbjct: 352 ERLQAAATSNEATHKFVAELRQQCYDAMNDDLQTPVVISKLFEACHIINTLLDHTGSIDQ 411 Query: 380 DLLPIFNASAHILGIEVC---KEHLNKN------ISIAIEKLVQERLILLKMKKFSSADY 430 L H+ ++ E N N ++ +++ R + K ++++D Sbjct: 412 KDLDELKEVMHLFAFDLLGLKNEQGNDNDAREAAYGKVVDMVLELRAKAKQAKDWATSDQ 471 Query: 431 IRKQLESKGFILEDYKN 447 IR L + GF ++D K+ Sbjct: 472 IRDALAANGFEVKDTKD 488 >gi|315186109|gb|EFU19871.1| cysteinyl-tRNA synthetase [Spirochaeta thermophila DSM 6578] Length = 470 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 250/493 (50%), Gaps = 62/493 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++NT+ R F + + MY CGPTVY++AHIGN R I DVL R L + G Sbjct: 2 ELRLFNTMGRIQEPFVPREAGKVGMYTCGPTVYNYAHIGNLRTYIFEDVLRRTL-LHAGY 60 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 + V +V N+TD+ +DK+I+ AR+ S+ I T+ F +DT + Sbjct: 61 RLV-HVMNVTDVGHLTSDGDEGEDKVIKAARERGMSV------WEIAEFFTKAFFEDTDK 113 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L P +AT HIP+MI L++ + GH Y A + +D S+ P YG +R +DEQ Sbjct: 114 LNIQRPEIVCKATEHIPEMIDLVKRLEERGHTYLAGGNVYYDISTFPRYGELAR--LDEQ 171 Query: 174 KM--GTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLG 228 + G RV HK++P DF+LW + E W+SPWG+G PGWH+ECSAMS YLG Sbjct: 172 DLRAGARVGVDAHKRSPRDFVLWFTRSKFEHQAMVWDSPWGKGYPGWHLECSAMSMKYLG 231 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIH GG+D I HH NEIAQS A W+H FL ++ KMSKS GNF+T+ Sbjct: 232 EQFDIHCGGVDHIPVHHTNEIAQSEGATGRHPWVRYWLHAEFLVMDSGKMSKSKGNFLTL 291 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------------S 335 + L E + F + R L HYR + F+ + L A Sbjct: 292 SSL-EEEGFHPLDY-----RYFCLGAHYRSQLFFSWEALEAARNARRNLIEHLSGLHPRE 345 Query: 336 KWPQTSTSK--GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA---- 389 W QT S+ A+ +DL+T A+ L + + K+ DL P A Sbjct: 346 GWEQTPLSERGEAYKREFEEAIGDDLSTPRALAVLWR----AVKDEDLPPEERAVLTVTM 401 Query: 390 -HILGIEVCKEHLNKN-ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ILG+ + + + + + + +LVQ R L K + F+ AD IR +L +G I+ED Sbjct: 402 DRILGLSLAEAIASDDALEPELLELVQRREALRKQRDFAEADRIRDELARRGIIVED--T 459 Query: 448 PDNGQRMTRWKQK 460 P RWK+K Sbjct: 460 PQG----PRWKRK 468 >gi|306836885|ref|ZP_07469840.1| cysteine--tRNA ligase [Corynebacterium accolens ATCC 49726] gi|304567226|gb|EFM42836.1| cysteine--tRNA ligase [Corynebacterium accolens ATCC 49726] Length = 374 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/394 (37%), Positives = 213/394 (54%), Gaps = 43/394 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 ++I++T R +F+ I P + +Y+CG T HIG+ R + FD+L R LL Y Sbjct: 4 LRIFDTATRSQRDFEPIRPGHASIYLCGATPQAQPHIGHLRSGVAFDILRRWLLAQGYD- 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V VRN+TDIDDKI+ +A + N S ++F K L L P+ +P Sbjct: 63 --VALVRNVTDIDDKILTKAAEN------NRPWWEWVSTYEREFTKAYNLLGVLPPSVEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYE------ANNEIIFDTSSI-----PNYGSFSRRKIDE 172 RAT + QM+ +Q +I G AY A + FD + +YG+ S +++E Sbjct: 115 RATGFVTQMVEYMQRLIDAGFAYPVPAPDGAAGSVYFDVEAWTKAEGSDYGALSGNRVEE 174 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G + K++P DF LWK + P EP W +PWGRGRPGWH+ECSAMS++YLG FD Sbjct: 175 MEQGES--DNAGKRSPLDFALWKAAKPGEPSWPTPWGRGRPGWHLECSAMSTYYLGSNFD 232 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GGLDL FPHHENEIAQS A +K AN W+HN ++ + G KMSKS GN ++I+ +L Sbjct: 233 IHCGGLDLQFPHHENEIAQSHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLSISNML 290 Query: 293 ETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSK 344 E + PV +R + HYR ++++ LTEA E + ++ + Sbjct: 291 ELVR--------PVELRYYLGSAHYRSVLEYSESALTEAAAGYRRIEGFVKRF--AGVER 340 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 G P A+ +D+ A+ A+H R K+ Sbjct: 341 GDWTPDFEDAMNDDIAVPKALAAIHTTVRAGNKD 374 >gi|288801920|ref|ZP_06407362.1| cysteine--tRNA ligase [Prevotella melaninogenica D18] gi|288335962|gb|EFC74395.1| cysteine--tRNA ligase [Prevotella melaninogenica D18] Length = 495 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 243/495 (49%), Gaps = 59/495 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I N+ MYVCGPTVY H+G+ARP I FD+L+R L++ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD +YG S R Sbjct: 114 SLNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSIYFDVEKYDKDHHYGVLSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 I + +R + K+N DF LWKR+ P W SPW G PGWH EC+AM YL Sbjct: 174 ITDMINNSRELAGVGEKRNQIDFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGG+DLIFPHHE EIAQ+ A + ++ W+HN + + G+KM KS GNFIT Sbjct: 234 GDHFDIHGGGMDLIFPHHECEIAQA-VASQGDEMVKYWMHNNMITINGQKMGKSLGNFIT 292 Query: 288 INELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 + + + +P+ IR +L HYR +DF+ + L AE + Sbjct: 293 LEQFFTGEHDTLTQAYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLMNGIEDLAR 352 Query: 347 IDPAVLS-----------------ALYNDLNTVSAIQALHKLA---------RESTKNHD 380 I PA S A+ +DL T + I L + + D Sbjct: 353 IQPAAASDENTKKFVAGFRQKCYDAMNDDLMTPAVISTLFEACHLVNILIDHKAQISVDD 412 Query: 381 LLPIFNA----SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSADYIR 432 L + A + ILG++ + N A K+V L L K ++ +D IR Sbjct: 413 LKELTEAMQLFAFDILGLQNERGANNDAREEAYGKVVDMVLDLRAKAKAEKNWAVSDQIR 472 Query: 433 KQLESKGFILEDYKN 447 L GF ++D K+ Sbjct: 473 DALAEAGFQVKDTKD 487 >gi|225377341|ref|ZP_03754562.1| hypothetical protein ROSEINA2194_02988 [Roseburia inulinivorans DSM 16841] gi|225210872|gb|EEG93226.1| hypothetical protein ROSEINA2194_02988 [Roseburia inulinivorans DSM 16841] Length = 473 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 248/478 (51%), Gaps = 50/478 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K YNTL +KI + I MY CGPTVY FAHIGN R I+ DVL + LRY Sbjct: 1 MENNFKFYNTLTKKIETVIPHEDGKIAMYTCGPTVYHFAHIGNLRSYIMEDVLEKSLRYV 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V V NITD+ +DK+++ A++EH ++ I T F +D Sbjct: 61 GYD--VKRVMNITDVGHLASDADTGEDKMLKGAKREHKTV------MEIAKFYTDAFFED 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 +L P ATN IP+ I +I+ ++ G+AY+A + FDTS + NY FS + Sbjct: 113 CKKLNIKTPDVVEPATNCIPEFIKMIEGLLEKGYAYQAGGNVYFDTSKLDNYYVFSTQAE 172 Query: 171 DEQKMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSH 225 E +G R V E +KKN DF+LW + E W+SPWG G PGWHIECS + Sbjct: 173 LETLVGVRDDVDEDTNKKNKTDFVLWFTKSKFEDQALKWDSPWGVGYPGWHIECSCIGIK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 +LG+ DIH GG+D IFPHH NEIAQS K N W H LN + KMSKS G+F Sbjct: 233 HLGEYMDIHCGGVDNIFPHHTNEIAQSESY-LGHKWCNYWFHVQHLNDKSGKMSKSKGDF 291 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-- 343 +T++ L E + + V R+ L +HYR+P++F+ + + + +K + Sbjct: 292 LTVSLLQE------KGYDPIVYRMFCLQSHYRKPLEFSYEIMDNTKAAYNKLVKRVAGLK 345 Query: 344 -KGIIDPAVLS--------ALYNDLNTVSAIQALHKLARESTKN---HDLLPIFNASAHI 391 +G D V + A+ NDLNT AI L+ L + T + ++L+ F+ Sbjct: 346 KEGETDQNVFAEYKAKFVDAISNDLNTSMAITVLYDLLKADTNDITKYELIKDFDKVLS- 404 Query: 392 LGIEVCK-----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 L +E K E ++ + + ++ER K K F+ AD IR +L +KG +++D Sbjct: 405 LNLENAKSTETTEGVDAELESFVLAKIEERKEAKKAKDFAKADAIRDELLAKGIVIKD 462 >gi|282858921|ref|ZP_06268061.1| cysteine--tRNA ligase [Prevotella bivia JCVIHMP010] gi|282588303|gb|EFB93468.1| cysteine--tRNA ligase [Prevotella bivia JCVIHMP010] Length = 495 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 173/496 (34%), Positives = 248/496 (50%), Gaps = 61/496 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I N+ MYVCGPTVY H+G+ARP I FD+L+R L++ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPNVGMYVCGPTVYGDPHLGHARPSITFDILFRYLQHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDSDEGDDKIEKKARLEQLE-PME-----IAQYYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRK 169 L L P+ +P AT HI + L+ I+ +G+AYE+N I FD + YG S R Sbjct: 114 ALNVLPPSIEPHATGHIIEQEQLVDEIMKNGYAYESNGSIYFDVAKFNEDYKYGVLSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ +R + K+N DF LWKR+ P W S W G PGWH EC+AM YL Sbjct: 174 LNDMINNSRELAGVSEKRNQVDFALWKRAMPEHIMRWPSKWSEGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGG+DL+FPHHE EIAQ+ A + ++ W+HN + + G+KM KS GNFIT Sbjct: 234 GNHFDIHGGGIDLVFPHHECEIAQA-VASQGDEMVKYWMHNNMITINGQKMGKSLGNFIT 292 Query: 288 INELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRL------------------- 327 ++E +P+ IR +L HYR +DF+ + L Sbjct: 293 LSEFFTGSHEKLEQAYSPMTIRFFILSAHYRGTVDFSNEALQASQKGYEKLMNGIEDLSR 352 Query: 328 --------TEAEILLSKWPQ---TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST 376 T + +S + Q + + ++ PAV+S+L+ + V+ + HK + Sbjct: 353 VQTSGESDTNTKQFVSTFRQKCYDAMNDDLMTPAVISSLFEACHVVNLL-VDHKAQISAD 411 Query: 377 KNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSADYI 431 +L + N A ILG+ + N A K+V L L K ++ +D I Sbjct: 412 DLKELSEVMNIFAFDILGLRNERSANNDAREEAFGKVVDMVLDLRAKAKAEKNWAVSDQI 471 Query: 432 RKQLESKGFILEDYKN 447 R L GF ++D K+ Sbjct: 472 RDALAEAGFNVKDTKD 487 >gi|325268337|ref|ZP_08134970.1| cysteine--tRNA ligase [Prevotella multiformis DSM 16608] gi|324989479|gb|EGC21429.1| cysteine--tRNA ligase [Prevotella multiformis DSM 16608] Length = 495 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 180/504 (35%), Positives = 252/504 (50%), Gaps = 77/504 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ ++ MYVCGPTVY H+G+ARP I FD+L+R LR+ G Sbjct: 2 QDLVIYNTLHRKKELFQPTAAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLRHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD +YG S R Sbjct: 114 ALNVLPPSIEPHATGHIIEQEELVKQILANGYAYESNGSIYFDVEKYDKDHHYGILSGRN 173 Query: 170 IDEQKMGTR----VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 + + +R V EK+ N ADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 174 LTDMINNSRELAGVGEKH---NQADFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGR 230 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + ++ W+HN + + G+KM KS GN Sbjct: 231 KYLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVKYWMHNNMITINGQKMGKSLGN 289 Query: 285 FITINELLETKKFGGRS------WPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL----- 333 FIT+ + F GR + IR +L HYR +DF+ + L AE Sbjct: 290 FITLEQF-----FTGRHETLTQPYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLM 344 Query: 334 -----LSKWPQTSTSKG--------------------IIDPAVLSALYNDLNTVSAIQAL 368 L++ ++ S G ++ PAV+S L+ + V+ I Sbjct: 345 NGIEDLARIQASAASDGNTGKFVSAFRKKCYEAMNDDLMTPAVISELFEACHLVN-ILID 403 Query: 369 HKLARESTKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKM----K 423 HK + +L + A ILG++ + N A K+V L L K Sbjct: 404 HKAQISAGDLKELTEAMHLFAFDILGLKNERSADNDAREEAYGKVVDMVLDLRAKAKAEK 463 Query: 424 KFSSADYIRKQLESKGFILEDYKN 447 ++ +D IR L + GF ++D K+ Sbjct: 464 NWAVSDQIRDALSAAGFQVKDTKD 487 >gi|150009429|ref|YP_001304172.1| cysteinyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503] gi|187629835|sp|A6LFT6|SYC_PARD8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149937853|gb|ABR44550.1| cysteinyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503] Length = 491 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 255/493 (51%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLNIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD YG S Sbjct: 113 MDALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESQGSVYFDVEKYNKDHKYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLNTTRALDGQDEKHNAIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + +++ A IR +L HYR +DF+ + L AE LS+ + Sbjct: 292 ITLEQFFTGDHPSLQQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLSRLMEAYGHL 351 Query: 340 -------TST--SKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLL 382 TST +KG+ + A+ +DLN+ I L R ++T + + L Sbjct: 352 MKLQPSATSTVDTKGLREK-CFEAMNDDLNSPIVISHLFDATRAINSVKDGKATLSEEDL 410 Query: 383 PIFNASAHILGIEVC--KEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H+ ++ K+ + + A++ L+ R K ++++D IR + Sbjct: 411 KELQEVFHLFLFDILGMKDEASASGNHYEAFGKAVDLLLSIRQQAKANKDWATSDKIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTAMGFEIKDTKD 483 >gi|86133639|ref|ZP_01052221.1| Cysteinyl-tRNA synthetase [Polaribacter sp. MED152] gi|85820502|gb|EAQ41649.1| Cysteinyl-tRNA synthetase [Polaribacter sp. MED152] Length = 492 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 255/490 (52%), Gaps = 56/490 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++KIYN+L + +F+ I + MYVCGPTVY AH+GN R + FDV+YR L + Sbjct: 6 ENQLKIYNSLSKSKEDFKPITEGYVGMYVCGPTVYSNAHLGNVRTFMFFDVVYRYL-LHL 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD +D+I ++AR E P+ + K T F Sbjct: 65 GYK-VRYVRNITDAGHLENDADEGEDRISKKARLEEIE-PME-----VVQKYTVDFHNVL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRR 168 L P+ +P AT HI + I +I+ II G AYE N + FD + NYG S R Sbjct: 118 ENYNFLPPSIEPTATGHIVEQIEMIKEIIEKGFAYEVNGSVYFDVLEYNKKENYGILSGR 177 Query: 169 KIDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 K+++ TR + + KKNP DF LWK++ W SPW G PGWH+ECS MS+ Y Sbjct: 178 KVEDLIHNTRTLDGQSDKKNPQDFALWKKADDRHIMRWPSPWSDGFPGWHLECSVMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL FPHHE EIAQS + K N W+H L L +KM+KS GNFI Sbjct: 238 LGESFDIHGGGMDLKFPHHECEIAQSKTCSGV-KPVNYWMHTNMLLLNSQKMAKSTGNFI 296 Query: 287 TINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLS 335 NE+L +++ A V+R + +YR +DF+ +L EA L Sbjct: 297 LPNEILTGNNDILPKAFSASVVRFFNMQANYRSILDFSGDALEASEKGHSKLMEAVAFLD 356 Query: 336 KWPQTSTSKGIID---PAVLSALYNDLNT-------VSAIQALHKL--ARESTKNHDLLP 383 K STS ++ +A+ +D NT A++ ++++ + S D L Sbjct: 357 KIEAGSTSTFNVENWKKDCYAAMNDDFNTPILISHLFEAVKLINQIKEGKGSLTETD-LT 415 Query: 384 IFNASA-----HILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 +F + +LG+ E +++ +K + +E L++ R + K ++ +D IR +L Sbjct: 416 LFKTTIKAFVFDVLGLIGEDAQDNSDK-VKGVVELLIKLRKEARENKDWALSDQIRDELV 474 Query: 437 SKGFILEDYK 446 + G L+D K Sbjct: 475 ALGIQLKDGK 484 >gi|283781355|ref|YP_003372110.1| cysteinyl-tRNA synthetase [Pirellula staleyi DSM 6068] gi|283439808|gb|ADB18250.1| cysteinyl-tRNA synthetase [Pirellula staleyi DSM 6068] Length = 515 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/525 (31%), Positives = 244/525 (46%), Gaps = 104/525 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL + F + + +Y+CGPTVY +HIG+ ++FD + R L Y Sbjct: 3 IRVYNTLSKTKEPFVPVVAGKVGIYLCGPTVYKESHIGHMVGPVIFDTIKRYLTY----- 57 Query: 65 C---VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 C VT+V NITD+DDK+I + R+ + +P+++ I ++ ++ + L Sbjct: 58 CGYQVTWVVNITDVDDKLIGQMRERN--LPMSE----IAAEMVVDYLNNLKALGVDQIDR 111 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+AT ++ +I I+++I AY A ++ FD YG S R D Q+ G Sbjct: 112 MPKATEYMDDIIRFIEDLIKKDFAYAAGGDVFFDVGRDAQYGKLSNRSADSQQ-GEGGEA 170 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P+DF LWK + P EP W+SPWG+GRPGWHIECSAMS LG+ FDIHGGGLDL+ Sbjct: 171 ASRKRSPSDFALWKSAKPGEPAWDSPWGQGRPGWHIECSAMSRAILGETFDIHGGGLDLV 230 Query: 242 FPHHENEIAQS-CCADRIEKTANIWIHNGFL-------NLEGR-------------KMSK 280 FPHHENE+AQS CC+ + N W+HNG L + G+ KMS+ Sbjct: 231 FPHHENELAQSECCSGK--PMVNFWMHNGLLRASSAAGKVGGKGDREEAAAPQPAGKMSR 288 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--- 337 S G + + E GG IR +L THYR + + + L E+ L + Sbjct: 289 SGGAGGLADVIAEQ---GGER-----IRFFLLKTHYRSTVVYGPEGLEESSTALESFYRF 340 Query: 338 ----------------PQTSTSKGIIDPA--------------VLSALYNDLNTVSAIQA 367 P G DPA L + +D NT A+ Sbjct: 341 FERFQRITKQRFFNLPPTLKREDGEFDPAGDPLLTLVHGFRQGFLEKMDDDFNTGGAMSD 400 Query: 368 LHKLARESTK-------------NHDLLPIFNASA-------HILGIEVCKEHLNKNISI 407 L ++ RE K H + I +A ILG+ + + Sbjct: 401 LFEMVREMNKFADQNKLDEVTQLPHPQVAILVKAAKTLRELTSILGLFLSQPAKRGGGGD 460 Query: 408 AIEKLVQERLILLKM-----KKFSSADYIRKQLESKGFILEDYKN 447 A+ V + ++ L+ K F++AD IR L G LED K Sbjct: 461 AVLPKVMQLMMELRTEARNRKDFATADRIRLGLAEMGIALEDRKG 505 >gi|89897982|ref|YP_515092.1| cysteinyl-tRNA synthetase [Chlamydophila felis Fe/C-56] gi|109894891|sp|Q255U1|SYC_CHLFF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89331354|dbj|BAE80947.1| cysteinyl tRNA synthetase [Chlamydophila felis Fe/C-56] Length = 476 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 163/482 (33%), Positives = 246/482 (51%), Gaps = 58/482 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + +YNT R F A + + +++Y CGPTVYD+AHIGN R + D+L R L ++ Sbjct: 9 QNLYLYNTATRTKELFSASN-APVKLYTCGPTVYDYAHIGNFRTYVFEDLLKRTLLFF-- 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V ++ NITD+DDK + A ++ N ++ T+ Q F +D L L Sbjct: 66 GYSVKHIMNITDVDDKTLAGACRK------NISLEEYTAPFIQAFFEDIAELNILPADVY 119 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-P 180 P AT++IPQMI IQ ++ AY ++ + F P YG S+ K+ + + +RV Sbjct: 120 PHATHYIPQMIKAIQKLLDENIAYIGQDSSVYFSIKKFPTYGKLSQLKLQDLQCCSRVTS 179 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 ++Y K+N +DF+LWK G WESP+G+GRPGWH+ECS M+ LG DIH GG Sbjct: 180 DEYDKENLSDFVLWKAYDEQRDGHIYWESPFGKGRPGWHLECSIMAMELLGSSIDIHAGG 239 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +D IFPHHENEIAQS + + W+H+ L ++G+KMSKS GNF T+ LL+ Sbjct: 240 VDNIFPHHENEIAQSESLSH-KPFSRYWLHSEHLLVDGKKMSKSLGNFFTLRNLLD---- 294 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGI 346 R + IR +L +HYR ++FT + L L + +P+++T Sbjct: 295 --RGFSGEEIRYLLLQSHYRMQLNFTEEGLLACRQALKRLRDFISRLENPYPESTTISDE 352 Query: 347 ID-------PAVLSALYNDLN--------------TVSAIQALHKLARESTKNHDLLPIF 385 ID A ++ NDLN T S I ++ DLL Sbjct: 353 IDQQGKTFLKAFSDSIANDLNIAAALAALFDFIHQTNSFIDKSKFTQADANYILDLLKKI 412 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 N IL +E I + +LV++R + + K ++ AD R Q+ S G+++ED Sbjct: 413 NTVLGILQFSATQE-----IPDEVMQLVEKREVARREKNWAQADAFRDQVASLGYLIEDS 467 Query: 446 KN 447 K+ Sbjct: 468 KS 469 >gi|227503949|ref|ZP_03933998.1| cysteinyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] gi|227199471|gb|EEI79519.1| cysteinyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] Length = 477 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 162/481 (33%), Positives = 245/481 (50%), Gaps = 61/481 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R +F + + +Y+CG T HIG+ R + FD+L R L + Sbjct: 7 LRIFDTATRTQRDFVPVKEGHASIYLCGATPQAQPHIGHLRSGVAFDILRRWLMAQGLD- 65 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + P + +S ++F K L L P+ +PR Sbjct: 66 -VAFVRNVTDIDDKILNKAAEN--GRPWWEWVSTYE----REFTKAYNTLGVLPPSVEPR 118 Query: 125 ATNHIPQMIYLIQNIILHGHAY---------EANNEIIFDTSSI-----PNYGSFSRRKI 170 AT + QM+ +Q +I G AY + + FD ++ +YGS S ++ Sbjct: 119 ATGFVTQMVDYMQRLIDAGFAYAVPDDTAGVDGAGSVYFDVTAWNAAEGSDYGSLSGNRV 178 Query: 171 DEQKMG-TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 ++ G + K+ P DF LWK + P EP W +PWG+GRPGWH+ECSAMS++YLG Sbjct: 179 EDMDQGEGQEALARGKRGPQDFALWKGAKPGEPSWPTPWGKGRPGWHLECSAMSTYYLGS 238 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIH GGLDL FPHHENE+AQS A +K AN W+HN ++ + G KMSKS GN + I+ Sbjct: 239 EFDIHCGGLDLQFPHHENEVAQSHAAG--DKFANYWMHNHWVTMAGEKMSKSLGNVLAID 296 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA---------------EIL 333 +LE + PV +R + HYR ++++ LTEA +++ Sbjct: 297 NMLEIVR--------PVELRYYLGSAHYRSVLEYSEAALTEAAAGYRRIEDFVNKFDDLV 348 Query: 334 LSKWPQTSTSKGIIDPAVLSALYNDLNTVSAI-QALHKLARESTKNHDLLPIFNASAHIL 392 + W Q D AV AL TV A +AL + + + + A A +L Sbjct: 349 VGDWTQGFEDAMNDDIAVPKALAEIHTTVRAGNKALAEGSADEARK--AAESVRAMAAVL 406 Query: 393 GIEVCKEH-----LNKNISIAIEKLVQ---ERLILLKMKK-FSSADYIRKQLESKGFILE 443 G + E L N A++ LVQ ER + +K +++AD +R +L + G + Sbjct: 407 GFDPLDEQWKDGTLTSNADAALDVLVQAELERRTQARAEKDWATADAVRDRLAAAGITIT 466 Query: 444 D 444 D Sbjct: 467 D 467 >gi|256820848|ref|YP_003142127.1| cysteinyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271] gi|256582431|gb|ACU93566.1| cysteinyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271] Length = 492 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 171/493 (34%), Positives = 250/493 (50%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++KI+N+L + F + +N+ MYVCGPTVY H+GN R + FD +YR L++ Sbjct: 1 MEHQLKIFNSLTGEKEVFVPLHENNVGMYVCGPTVYSNVHLGNVRTFMSFDFVYRTLKFL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 61 -GYK-VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFS 166 L PT +P AT HI + I L + ++ G AYE+N + FD NYG S Sbjct: 113 LEIFNLLPPTIEPTATGHILEQIQLTEKLLKDGFAYESNGSVYFDVLEYNKRGLNYGELS 172 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RR I+E TR + + K+NP DF LWK+++P W SPWG G PGWH+EC+ MS+ Sbjct: 173 RRNIEELFANTRDLDGQGEKRNPQDFALWKKASPAHIMRWASPWGDGFPGWHLECTVMST 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL FPHHE EIAQ A E W+H L + G++MSKS GN Sbjct: 233 KYLGNQFDIHGGGMDLKFPHHECEIAQG-KAGHGESPVRYWMHANMLTMNGQRMSKSTGN 291 Query: 285 FITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 +I EL+ + F + + VIR + HYR +D + RL EA + Sbjct: 292 YILPMELISGENTFFEKPFAPAVIRFCFMQAHYRSVLDISNEAMLAAEKGFNRLMEAIKI 351 Query: 334 LSKWPQTS---TSKGIID--PAVLSALYNDLNTVSAIQALHKLAR------------EST 376 L++ + TS I + AL +D N+ I L + + T Sbjct: 352 LNELTTDTELPTSLPIAEWKQKCYDALLDDFNSPILIAHLFEAVKWIFQVKNDEERISVT 411 Query: 377 KNHDLLPIFNASAH-ILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRK 433 + +L + NA +LG++ ++ +N N + ++ L+ R+ K + +D IR Sbjct: 412 ELKELKELMNAFVFDVLGLQSEQQTVNNNDKLDGVLQLLINMRMEARANKDWVLSDKIRD 471 Query: 434 QLESKGFILEDYK 446 +L + G L+D K Sbjct: 472 ELLALGIQLKDGK 484 >gi|167045622|gb|ABZ10271.1| putative tRNA synthetases class I (C) catalytic domain protein [uncultured marine microorganism HF4000_APKG10K24] Length = 754 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 230/465 (49%), Gaps = 40/465 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL ++I E Q I+P +RMY CGPTVY AHIGN R ++ D + R L E Sbjct: 24 LRIFNTLTKQIEEIQPIEPGKVRMYTCGPTVYRDAHIGNLRTYLMADWIRRALEIKGIE- 82 Query: 65 CVTYVRNITDID-----------DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V +V+NITD+ DK+I A +E I +F D R Sbjct: 83 -VHHVKNITDVGHMRQELVEAGGDKMILAALEE------GKTTQDIAQFYADRFHADEAR 135 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 + L P AT HIP+M+ +++ ++ +G+AYEA I F+ +S +YG SR + Sbjct: 136 MNILPAHVFPWATQHIPEMVAIVEKLMANGNAYEAGGNIYFNVNSFADYGKLSRNTGADL 195 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 G R KK+P DF LWK + P + W SPWG G PGWHIECSAM+S Y G+ FD Sbjct: 196 LEGVRAEADPLKKDPRDFTLWKAAEPGRDLKWASPWGDGFPGWHIECSAMASKYFGESFD 255 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 +H GG+D IFPHHE+EIAQS A ++ W+H L +G KM+KS+GN I EL+ Sbjct: 256 LHTGGVDNIFPHHEDEIAQSEAAFG-QQHVRYWVHAQHLLADGAKMAKSSGNVFLIEELI 314 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----W-----PQTST 342 R + R L YR ++FT L AE L+ W P+ S Sbjct: 315 ------FRGFDPLAFRYLCLTVRYRHRMNFTFNSLRAAEKALTSMRQRFWIWKGLPELSQ 368 Query: 343 SKGIIDP---AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE 399 +D ++ NDL+ A+ + + L + I G+++ Sbjct: 369 LPSEVDEWRRKFWESVENDLDLPGALALTWDMFKSDLPGQAKLALLIEFDEIFGLDLDAL 428 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +I + V +R L ++ AD IR + S+GF++ED Sbjct: 429 SKSHDIPAPVTAAVGQRESLRYNSDYAPADTIRTDVLSQGFLVED 473 >gi|255016291|ref|ZP_05288417.1| cysteinyl-tRNA synthetase [Bacteroides sp. 2_1_7] Length = 491 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 255/493 (51%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MEHPLNIYNTLTRKKEQFIPLHEPHVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLTHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++AR E P+ + ++ + Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLE-PME-----VVQYYLNRYHQA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD YG S Sbjct: 113 MDALNVLPPSIEPHASGHIIEQIELVKKILDNGYAYESQGSVYFDVEKYNKDHRYGILSG 172 Query: 168 RKIDEQKMGTRVPEKYHKK-NPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R I++ TR + +K N DF LWK + P W SPW G PGWH EC+AM Sbjct: 173 RNIEDMLNTTRALDGQDEKHNAIDFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGKK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DLIFPHHE EIAQ+ A + + + W+HN + + G+KM KS GNF Sbjct: 233 YLGEHFDIHGGGMDLIFPHHECEIAQA-VASQGDDMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----- 339 IT+ + +++ A IR +L HYR +DF+ + L AE LS+ + Sbjct: 292 ITLEQFFTGDHPSLQQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLSRLMEAYGHL 351 Query: 340 -------TST--SKGIIDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLL 382 TST +KG+ + A+ +DLN+ I L R ++T + + L Sbjct: 352 MKLQPSATSTVDTKGLREK-CFEAMNDDLNSPIVISHLFDATRAINSVKDGKATLSEEDL 410 Query: 383 PIFNASAHILGIEVC--KEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 H+ ++ K+ + + A++ L+ R K ++++D IR + Sbjct: 411 KELQEVFHLFLFDILGMKDEASASGNHYEAFGKAVDLLLSIRQQAKANKDWATSDKIRNE 470 Query: 435 LESKGFILEDYKN 447 L + GF ++D K+ Sbjct: 471 LTAMGFEIKDTKD 483 >gi|315224033|ref|ZP_07865874.1| cysteine--tRNA ligase [Capnocytophaga ochracea F0287] gi|314946004|gb|EFS98012.1| cysteine--tRNA ligase [Capnocytophaga ochracea F0287] Length = 492 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 170/493 (34%), Positives = 251/493 (50%), Gaps = 56/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++++KI+N+L + F + +N+ MYVCGPTVY H+GN R + FD +YR L++ Sbjct: 1 MEQRLKIFNSLTGEKEVFVPLHENNVGMYVCGPTVYSNVHLGNVRTFMSFDFVYRTLKFL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 61 -GYK-VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFS 166 L PT +P AT HI + I L + ++ G AYE+N + FD NYG S Sbjct: 113 LEIFNLLPPTIEPTATGHILEQIQLTEKLLKDGFAYESNGSVYFDVLEYNKRGLNYGELS 172 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RR I+E TR + + K+NP DF LWK+++P W SPWG G PGWH+EC+ MS+ Sbjct: 173 RRNIEELFANTRDLDGQGEKRNPQDFALWKKASPAHIMRWASPWGDGFPGWHLECTVMST 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL FPHHE EIAQ A E W+H L + G++MSKS GN Sbjct: 233 KYLGNQFDIHGGGMDLKFPHHECEIAQG-KAGHGESPVRYWMHANMLTMNGQRMSKSTGN 291 Query: 285 FITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 +I +L+ + F + + VIR + HYR +D + RL EA + Sbjct: 292 YILPMQLISGENTFFEKPFAPAVIRFCFMQAHYRSVLDISNEAMLAAEKGFNRLMEAMKI 351 Query: 334 LSKW---PQTSTSKGIID--PAVLSALYNDLNTVSAIQALHKLAR------------EST 376 L++ + TS I + AL +D N+ I L + + T Sbjct: 352 LNELTTDAELPTSLPIAEWKQKCYDALLDDFNSPILIAHLFEAVKWIFQVKNGEEKISVT 411 Query: 377 KNHDLLPIFNASAH-ILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRK 433 + ++L + NA +LG++ ++ N N + ++ L+ R+ K + +D IR Sbjct: 412 ELNELKELMNAFVFDVLGLQNEQQTANNNDKLDGVLQLLINMRMEARANKDWVLSDKIRD 471 Query: 434 QLESKGFILEDYK 446 +L + G L+D K Sbjct: 472 ELLALGIQLKDGK 484 >gi|46446869|ref|YP_008234.1| cysteinyl-tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25] gi|61216206|sp|Q6MBU0|SYC_PARUW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|46400510|emb|CAF23959.1| putative cysteinyl tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25] Length = 478 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 249/478 (52%), Gaps = 58/478 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT ER+ E + I ++I++Y CGPTVY +AHIGN R I D+L R ++++ Sbjct: 11 LRLYNTAERQKQELKPIKGNHIQLYTCGPTVYHYAHIGNFRTYIFEDLLRRTIQFF--GF 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T V N+TD+DDK I A I + T F +D L + + P Sbjct: 69 SITQVMNLTDVDDKTIRGA------IAKGITLDEYTKPYKDAFFEDLKTLNIQSAEYYPA 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT++IP MI +I+ ++ AY+ + I + + P YG S +++ + G Sbjct: 123 ATDYIPAMIEMIKVLLDKKVAYKGGDGSIYYAINQFPRYGCLSHLHLEDLQAGASERVAA 182 Query: 181 EKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 ++Y K++ ADF+LWK G WESP+G GRPGWH+ECSAM+ H LG+ DIH GG Sbjct: 183 DEYEKEHVADFVLWKSYDSERDGQIYWESPFGLGRPGWHLECSAMAMHLLGETIDIHVGG 242 Query: 238 LDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 +D +FPHHENEIAQS C+ + K N+W+H L ++ +KMSKS GNF T+ +LL K Sbjct: 243 IDNMFPHHENEIAQSEACSGK--KFVNLWMHAEHLVVDQKKMSKSLGNFYTLRDLL-NKG 299 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGII 347 F G +R +L THY+ ++FT Q + + L + QT S G + Sbjct: 300 FTGIQ-----VRYLLLQTHYKTQLNFTFQGVESVKSSLQRLNDFIQRIYNIQTLQSDGQV 354 Query: 348 DPAV-------LSALYNDLNTVSAIQALHKLARE----------STKNHD----LLPIFN 386 D V AL +DLN SA+ A+ RE S K + L+ F+ Sbjct: 355 DLLVNDALIRFAEALADDLNISSALAAIFDFVREINCLCDVNQVSQKEAETVINLMKKFD 414 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +L + +E + ++ A K Q R + K ++ +D +R + +G+++ED Sbjct: 415 TILGVLTFDKREESIPVDLQEAFAKRQQAR----QEKNWTLSDELRDFIHQRGYLIED 468 >gi|305680320|ref|ZP_07403128.1| cysteine--tRNA ligase [Corynebacterium matruchotii ATCC 14266] gi|305659851|gb|EFM49350.1| cysteine--tRNA ligase [Corynebacterium matruchotii ATCC 14266] Length = 507 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 234/477 (49%), Gaps = 57/477 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R + +F + P MY+CG T HIG+ R + FD++ R L Sbjct: 40 LRIFDTRTRSLRDFVPLTPGRATMYLCGATPQTNPHIGHVRSGVAFDIVRRWL--MASGY 97 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TDIDDKI+ +A + N S + F L L P+ +PR Sbjct: 98 DVAFVRNVTDIDDKILTKAAE------ANRPWWEWVSTYERAFSHAYDMLGVLPPSVEPR 151 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-----NYGSFSRRKIDEQKMGTRV 179 AT H+ QMI +Q +I G AY A + FD ++ +YGS S + + + G Sbjct: 152 ATGHMTQMITYMQRLIDAGFAYPAQGSVYFDVAAWSAADGSDYGSLSGNNLIDMEQGET- 210 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K++P DF LWK + P EP W +PWG GRPGWH+ECSAMS+ YLG FDIHGGGLD Sbjct: 211 -DNVGKRSPQDFALWKAAKPGEPSWPTPWGDGRPGWHLECSAMSTWYLGPEFDIHGGGLD 269 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQ+ A + A W+HN ++ + G KMSKS GN +++ E+++ + Sbjct: 270 LQFPHHENEIAQAHAAG--DGFARYWMHNHWVTIAGEKMSKSLGNVLSVPEIVKLVR--- 324 Query: 300 RSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWP----QTSTSKGII 347 PV +R + HYR ++++ L EA E + K Q G Sbjct: 325 -----PVELRYYLGSAHYRSVLEYSPDALQEAAQGYRRIESFVEKVDDLPGQPPVPVGEW 379 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCK 398 A A+ +D+ A+ +H R + + A +LG + Sbjct: 380 TDAFAEAMNDDIGVPRALAEIHNTVRAGNSALAMRDYGEARRMAARVRAMTEVLGFDPLS 439 Query: 399 EHLNKNIS-------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILED 444 + S +A++ LVQE L I +K + +AD +R +L G I+ D Sbjct: 440 DQWQDGESVRFDAPMVALDALVQEELDRREIARSVKDWETADAVRDRLLEVGIIVTD 496 >gi|148926966|ref|ZP_01810643.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845050|gb|EDK22147.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486] Length = 462 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 234/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTLEE------ITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNVSK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLDTPN 453 >gi|302346055|ref|YP_003814408.1| cysteine--tRNA ligase [Prevotella melaninogenica ATCC 25845] gi|302150108|gb|ADK96370.1| cysteine--tRNA ligase [Prevotella melaninogenica ATCC 25845] Length = 495 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 178/498 (35%), Positives = 243/498 (48%), Gaps = 65/498 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I N+ MYVCGPTVY H+G+ARP I FD+L+R L++ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L L P+ +P AT HI + L+ I+ +G+AYE+N I FD +YG S R Sbjct: 114 SLNVLPPSIEPHATGHIIEQEELVNQILANGYAYESNGSIYFDVEKYDKDHHYGVLSGRN 173 Query: 170 IDEQKMGTR----VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 I + +R V EK+ N DF LWKR+ P W SPW G PGWH EC+AM Sbjct: 174 ITDMINNSRELAGVDEKH---NQIDFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGR 230 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ W+HN + + G+KM KS GN Sbjct: 231 KYLGDHFDIHGGGMDLIFPHHECEIAQA-VASQGDEMVKYWMHNNMITINGQKMGKSLGN 289 Query: 285 FITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 FIT+ + + +P+ IR +L HYR +DF+ + L AE + Sbjct: 290 FITLEQFFTGEHDTLTQAYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLMNGIED 349 Query: 344 KGIIDPAVLS-----------------ALYNDLNTVSAIQALHKLA---------RESTK 377 I PA S A+ +DL T + I L + + Sbjct: 350 LARIQPAAASDENTKKFVAGFRQKCYDAMNDDLMTPAVISTLFEACHLVNILIDHKAQIS 409 Query: 378 NHDLLPIFNA----SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSAD 429 DL + A + ILG++ + N A K+V L L K ++ +D Sbjct: 410 ADDLKELTEAMQLFAFDILGLQNERGANNDAREEAYGKVVDMVLDLRAKAKAEKNWAVSD 469 Query: 430 YIRKQLESKGFILEDYKN 447 IR L GF ++D K+ Sbjct: 470 QIRDALAEAGFQVKDTKD 487 >gi|268316373|ref|YP_003290092.1| cysteinyl-tRNA synthetase [Rhodothermus marinus DSM 4252] gi|262333907|gb|ACY47704.1| cysteinyl-tRNA synthetase [Rhodothermus marinus DSM 4252] Length = 504 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 152/398 (38%), Positives = 207/398 (52%), Gaps = 38/398 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++YNTL R I ++ + +R+Y CGPTVY +AHIGN R + D++ R+ + G Sbjct: 6 KTLRLYNTLTRSIEPIYPLERNRLRLYACGPTVYTYAHIGNFRSFLTADLIVRVAQAL-G 64 Query: 63 EKCVTYVRNITDI-------------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 + V YV N+TD+ +DK+ R E N I + TQ F++ Sbjct: 65 WQTV-YVCNVTDVGHLTVDDYADASGEDKLERALRSEEGRRFPN--IWDLARYYTQAFLE 121 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 D L + P +PRAT HI Q I I+ ++ GHAYE + F S P+YG S + Sbjct: 122 DWQTLKLVEPDVRPRATEHIRQQILAIEQLVKTGHAYETRQGVYFHVPSFPDYGKLSGNR 181 Query: 170 IDEQ--KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 EQ + V + K++P DF LWK+ W SPWG G PGWHIECS MS YL Sbjct: 182 DPEQLARAVRDVVQDPEKRDPRDFALWKKDEKHLMQWYSPWGWGFPGWHIECSVMSMEYL 241 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FD+H GG DLIFPHHE EIAQ+ + A W+H FL +EG KMSKS GNF T Sbjct: 242 GETFDLHLGGEDLIFPHHECEIAQAESLTG-KPLARYWVHTRFLLVEGEKMSKSKGNFFT 300 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 + EL+ + GG+ +R A++ YREP++FT VQR EA + Sbjct: 301 VRELIFPPEAGGQGIDPMALRYALISGKYREPLNFTRKHLRDSIRIVQRYQEAARHVEAA 360 Query: 338 PQTSTSK--------GIIDPAVLSALYNDLNTVSAIQA 367 ++ S I L AL +DLNT A+ A Sbjct: 361 LESDRSGPDRLGDRLSTIYDKTLEALCDDLNTPVALAA 398 >gi|86150258|ref|ZP_01068485.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597534|ref|ZP_01100768.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562430|ref|YP_002344209.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11387149|sp|Q9PPB8|SYC_CAMJE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|85839374|gb|EAQ56636.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190126|gb|EAQ94101.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360136|emb|CAL34930.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926048|gb|ADC28400.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902] gi|315928267|gb|EFV07583.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929359|gb|EFV08565.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305] Length = 462 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 234/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTLEE------ITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIGIKSEIAKQILEILNDDLNVSK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIFGFGFMDATLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLDTPN 453 >gi|308450233|ref|XP_003088225.1| hypothetical protein CRE_17704 [Caenorhabditis remanei] gi|308248740|gb|EFO92692.1| hypothetical protein CRE_17704 [Caenorhabditis remanei] Length = 364 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/364 (39%), Positives = 207/364 (56%), Gaps = 39/364 (10%) Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRR 168 D L CLAP PRATN+I QM +I N++ G AY AN ++ F+ NYG S R Sbjct: 4 DAENLGCLAPDEAPRATNYIDQMQNMIGNLVNKGTAYPSANGDVYFEVEKFENYGRLSGR 63 Query: 169 KIDEQKMGT--RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHY 226 K+D+ + G RV + KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ Sbjct: 64 KLDDMQAGASERVDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCC 123 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG FDIHGGG DL+FPHHENEIAQS A E+ N W+H GF+N++G KMSKS GNF Sbjct: 124 LGNHFDIHGGGSDLLFPHHENEIAQSEAATD-EQYVNYWMHVGFINVDGEKMSKSLGNFF 182 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQTST 342 TI +++E + VIR ++ +HYR +DF+ L EA+ + + + + Sbjct: 183 TIRDVME-------KFHPEVIRYFIVSSHYRSRVDFSDFALKEAKLRFLVFIMHLKRINK 235 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNAS----AHILG 393 S I P +++ +D NT AI L ++ +E +N ++ ++ +ILG Sbjct: 236 SMAI-KPQ--TSMRDDFNTSEAIAVLFEIIKELNRAVKEENAAQSTLYYSTLRHLTNILG 292 Query: 394 I-----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + ++ +E L + IE +Q+R+ K K F+ AD IR+ L ++G +L Sbjct: 293 LVQYNVDDFLKSDIGQEALGLS-EADIEDFIQQRVDAKKNKDFARADEIRQSLLAQGVVL 351 Query: 443 EDYK 446 ED + Sbjct: 352 EDTR 355 >gi|288928857|ref|ZP_06422703.1| cysteine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288329841|gb|EFC68426.1| cysteine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 543 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 165/491 (33%), Positives = 243/491 (49%), Gaps = 59/491 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL RK F+ + N+ MYVCGPTVY H+G+ARP I FDV++R L++ G K V Sbjct: 54 IYNTLTRKKERFEPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDVVFRYLQHQ-GYK-V 111 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 YVRNITD+ DDKI ++AR E P+ I T + L Sbjct: 112 RYVRNITDVGHLEHDADDGDDKIAKKARLEQLE-PME-----IAQHYTNTYHAAMQLLNV 165 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS---SIPNYGSFSRRKIDEQ 173 L P+ +P+A+ HI + L++ I+ +G AYE+N I FD + YG S R +++ Sbjct: 166 LPPSIEPQASGHIIEQEELVKKILANGFAYESNGSIYFDIAKYNETHRYGILSGRNLEDV 225 Query: 174 KMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 +R + K+N ADF LWK + P W SPWG G PGWH EC+AM YLG+ F Sbjct: 226 LDASRKLDGVGEKRNQADFALWKHAQPEHIMRWPSPWGDGFPGWHCECTAMGRKYLGEHF 285 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQ+ A+ E+ W+HN + + G+KM KS GNFIT+ + Sbjct: 286 DIHGGGMDLIFPHHECEIAQAVAAEG-EQMVRYWMHNNMITINGQKMGKSLGNFITLEQF 344 Query: 292 LETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +P+ IR +L HYR +DF+ + L +E L + I PA Sbjct: 345 FNGAHPALEKAYSPMTIRFFILSAHYRGTVDFSNEALQASEKGLERLLNGIADLQRIQPA 404 Query: 351 VLS-----------------ALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIF 385 S A+ +D T + L + R ++ + + L Sbjct: 405 KTSDEATATIVNELPRKCYEAMNDDFQTPMVLSHLFEACRLINTLIDHKAQISAEHLEQL 464 Query: 386 NASAHILGIEVCKEHL---------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 + H+ ++ + + ++ ++ R K ++++D IR +L Sbjct: 465 ATTMHLFAFQLLGLNADNGNNNDAREEAFGHVVDMVLDLRAKAKADKDWATSDRIRDELA 524 Query: 437 SKGFILEDYKN 447 S GF ++D K+ Sbjct: 525 SAGFEVKDTKD 535 >gi|302873995|ref|YP_003842628.1| cysteinyl-tRNA synthetase [Clostridium cellulovorans 743B] gi|307689757|ref|ZP_07632203.1| cysteinyl-tRNA synthetase [Clostridium cellulovorans 743B] gi|302576852|gb|ADL50864.1| cysteinyl-tRNA synthetase [Clostridium cellulovorans 743B] Length = 472 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 249/477 (52%), Gaps = 49/477 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K YNTL +K+ +F + ++MY CGPTVY +AHIGN R I+ D+L + L+Y Sbjct: 2 KDFNFYNTLTKKVEKFIPNEEGKVKMYTCGPTVYHYAHIGNLRSYIMEDILEKYLKYIGY 61 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 + V V NITD+ +DK+++ A++E ++ I T F D Sbjct: 62 D--VKRVMNITDVGHLASDADVGEDKMLKGAKREKKTVLE------IAKFYTDAFFADCK 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 +L P ATN I I +I ++ +AY A + + FDTS + +Y S + +E Sbjct: 114 KLNIDIPEIIEPATNCIEDFINMISELLKKDYAYIAGDNVYFDTSKLDSYHVLSNQSEEE 173 Query: 173 QKMGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + R V E +K+N DF+LW + E WESPWG G PGWHIECS++S +L Sbjct: 174 LMVAVRDDVEEDTNKRNKNDFVLWFTKSKFDDQELKWESPWGVGYPGWHIECSSISMKHL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ DIH GG+D IFPHH NEIAQS A K N W H +LN + KMSKS G+F+T Sbjct: 234 GEYIDIHCGGIDNIFPHHTNEIAQS-EAFVGHKWCNYWFHIHYLNDKTGKMSKSKGDFLT 292 Query: 288 INELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRL---TEAEILLSKWPQTSTS 343 ++ LLE+K + P+I R+ L +HYR+P+ F+ + L A L K Sbjct: 293 VS-LLESKNYN------PLIYRMFCLQSHYRKPLVFSYEVLDNVVSAYNKLIKRVGDLKD 345 Query: 344 KGIIDPAVLSA--------LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE 395 +G +D A ++ L NDLNT SA ++ L ++ + L + +L I Sbjct: 346 EGELDQAKVAEYTEQFTNFLGNDLNTASAFTVIYDLLKDDISDKTKLHLVKDFDRVLSIG 405 Query: 396 VCK------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + ++K++ + ++ER K K F+SAD IR++L KG +++D K Sbjct: 406 LTNIDNNKIQEIDKDLEEFVTSKIEERNEARKRKDFASADAIRQELLDKGIVIKDSK 462 >gi|156974741|ref|YP_001445648.1| cysteinyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116] gi|156526335|gb|ABU71421.1| hypothetical protein VIBHAR_02459 [Vibrio harveyi ATCC BAA-1116] Length = 457 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 238/460 (51%), Gaps = 37/460 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K++++NTL R + F I+ + +Y CGPTVYD+AH GN R + DVL R L + Sbjct: 5 KLQLFNTLGRTLEPFNTIETGKVGLYACGPTVYDYAHAGNLRTYLFVDVLRRTLELNGYD 64 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V +V NITD+ +DK+ + AR++ N + I F+ D R Sbjct: 65 --VNHVMNITDVGHLVSDADTGEDKMEKGARKQ------NKSAWEIAKYFEDVFLDDLNR 116 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L + P+ RAT HI + I + + G Y+ ++ + FD++ +P+YG ++ + Sbjct: 117 LNIIEPSIICRATEHIQEQIEFVLELEQKGFTYQTSDGVYFDSAKLPDYGKLAKLDREGL 176 Query: 174 KMGTRVPEKYHKKNPADFILWKRS--TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G RV E KK+P DF LWK S TP + WESPWG G PGWHIECSAM+ YLG+VF Sbjct: 177 EAGIRV-EMAEKKSPTDFALWKFSGDTPRQMEWESPWGVGFPGWHIECSAMAEKYLGEVF 235 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG D I HH NEIAQ C A AN W+H FL L K+SKS G + ++ L Sbjct: 236 DIHVGGEDHIPVHHTNEIAQ-CQAKNGHVQANYWLHGFFLQLNKEKISKS-GTSLRLDAL 293 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---KGIID 348 +E + + R +L +HYR + FT + L A+ L + +++ G +D Sbjct: 294 IE------KGYDPLAYRYLVLTSHYRSHLSFTWESLDAAQTALKRLKAKASALPEGGKVD 347 Query: 349 PA----VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404 +S + NDL AI + +L + + D + G+E+ K + Sbjct: 348 QTNVERFMSLINNDLAMPQAIALMWELLGSALNDADKKATARYFDRVFGLELDKVE-EEE 406 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I I +LV+ RL + K K++ AD IR+++ G+ + D Sbjct: 407 IPSEILELVELRLQMKKQKEYQQADEIRQKVAELGYRIND 446 >gi|205356771|ref|ZP_03223530.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345338|gb|EDZ31982.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421] Length = 462 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 234/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LVQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMTQSGQTLEE------ITEFYIKSYEEDMRALNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +E+ +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNVSK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLDTPN 453 >gi|330443848|ref|YP_004376834.1| cysteinyl-tRNA synthetase [Chlamydophila pecorum E58] gi|328806958|gb|AEB41131.1| cysteinyl-tRNA synthetase [Chlamydophila pecorum E58] Length = 475 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 168/481 (34%), Positives = 248/481 (51%), Gaps = 54/481 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +K + +YNT R+ F S +++Y CGPTVYDFAHIGN R I D+L R L + Sbjct: 7 QKPLYLYNTASRQKEAFSPY-ASPVKLYTCGPTVYDFAHIGNFRTYIFEDLLKRTLIFL- 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+V NITD+DDK + A ++ S+ T Q F +D L Sbjct: 65 -GYSVTHVMNITDVDDKTLAGACKQGISL------QEYTQPYIQAFFEDLETLHISRADA 117 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTR-V 179 PRAT++IPQMI I+ ++ G AY ++ + F S +YG S + + + T+ Sbjct: 118 YPRATHYIPQMIQAIEKLLDQGAAYIGHDASVYFSISRFSSYGKLSHLHLQDLQCCTQNT 177 Query: 180 PEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 ++Y K+N DF+LWK G WESP+G+GRPGWH+ECS M+ LG+ DIH G Sbjct: 178 SDEYDKENLCDFVLWKAYNSERDGKIYWESPFGKGRPGWHLECSIMAMELLGESIDIHAG 237 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+D IFPHHENEIAQS + A W+H+ L ++G+KMSKS GNF+T+ +L Sbjct: 238 GVDNIFPHHENEIAQSETLSG-KPFARYWLHSEHLLVDGKKMSKSLGNFLTLRDLTH--- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WP---QTST 342 R + +R +L +HYR ++FT + L L + +P Q S Sbjct: 294 ---RGFSGEELRYMLLQSHYRTQLNFTEEGLLSCRQALKRLRDFISRLQEPYPDGEQPSE 350 Query: 343 SKGIIDPAVLS----ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-HILGIEVC 397 + + +L+ AL NDLN + +L E+ D A A HIL + Sbjct: 351 ATRTVAKTLLTNFTDALTNDLNIAVGLASLFDFVHETHSLIDAGSFSKADAEHILAL--- 407 Query: 398 KEHLNK-------NISIAIE----KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +HLN+ + SI+I +LV +R K + AD++R ++ + GF++ED K Sbjct: 408 LKHLNQVLKVLPISASISIPDRVWELVMKREKARTSKSWKEADFLRNEILALGFVVEDSK 467 Query: 447 N 447 + Sbjct: 468 S 468 >gi|281422306|ref|ZP_06253305.1| cysteine--tRNA ligase [Prevotella copri DSM 18205] gi|281403627|gb|EFB34307.1| cysteine--tRNA ligase [Prevotella copri DSM 18205] Length = 496 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 178/502 (35%), Positives = 249/502 (49%), Gaps = 69/502 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ IYNTL R F + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLLIYNTLTRTKERFTPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQYYTNRYHDA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P AT HI + L+Q I+ +G+AYE+N I FD YG S Sbjct: 113 MEALNVLPPSIEPHATGHIIEQEKLVQEILDNGYAYESNGSIYFDIEKYNKDHKYGILSG 172 Query: 168 RK----IDEQKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAM 222 R I+E + + EK KN ADF LWK+++P W SPW G PGWH EC+AM Sbjct: 173 RNLENVINESRELAGIGEK---KNQADFALWKKASPEHIMRWPSPWSDGFPGWHCECTAM 229 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ + W+HN + + G+KM KS Sbjct: 230 GRKYLGSHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVHYWMHNNMITINGQKMGKSL 288 Query: 283 GNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAE 331 GNFIT+ + +P+ IR +L HYR +DF+ ++RL Sbjct: 289 GNFITLEQFFTGNHDSLEQAYSPMTIRFFILSAHYRSTVDFSNDALKASQKGLERLMNGL 348 Query: 332 ILLSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQAL------------HKL- 371 L + P S + V A+ +D T I L HK Sbjct: 349 NDLERVPVAKQSDEQVKKFVSELRQRCYDAMNDDFQTQLVISYLFEACHVINTALDHKAN 408 Query: 372 --ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKF 425 A + + D + +F + +LG++ K N A K+V L L K + Sbjct: 409 ISAEDLKELSDTMHLF--TFDLLGLKSEKGANNDAREEAYGKVVDMVLNLRAKAKADKDW 466 Query: 426 SSADYIRKQLESKGFILEDYKN 447 +++D IR L GF ++D K+ Sbjct: 467 ATSDQIRDALAEAGFEVKDTKD 488 >gi|260592037|ref|ZP_05857495.1| cysteine--tRNA ligase [Prevotella veroralis F0319] gi|260536321|gb|EEX18938.1| cysteine--tRNA ligase [Prevotella veroralis F0319] Length = 495 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 179/499 (35%), Positives = 248/499 (49%), Gaps = 67/499 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL RK FQ I N+ MYVCGPTVY H+G+ARP I FD+L+R L++ G Sbjct: 2 QDLVIYNTLHRKKELFQPIAAPNVGMYVCGPTVYGDPHLGHARPAITFDLLFRYLKHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQYYTNRYHDAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD + +YG S R Sbjct: 114 ALNVLPPSIEPHATGHIIEQEELVKQIMDNGYAYESNGSIYFDVAKYDKDHHYGVLSGRN 173 Query: 170 IDEQKMGTR----VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 + + +R V EK+ N DF LWKR+ P W SPW G PGWH EC+AM Sbjct: 174 LTDMINNSRELAGVGEKH---NQVDFALWKRAMPEHIMRWPSPWSNGFPGWHCECTAMGR 230 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ W+HN + + G+KM KS GN Sbjct: 231 KYLGDHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVKYWMHNNMITINGQKMGKSLGN 289 Query: 285 FITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE------------ 331 FIT+ + K +P+ IR +L HYR +DF+ + L AE Sbjct: 290 FITLEQFFTGKHDTLTQAYSPMTIRFFILSAHYRGTVDFSNEALQAAEKGYERLMNGIED 349 Query: 332 ---ILLSKWPQTSTSK---------------GIIDPAVLSALYNDLNTVSAIQALHKLAR 373 I S +T K ++ PAV+S L+ + V+ + HK Sbjct: 350 SARIQPSDASDDNTKKFVANFRQKCYDAMNDDLMTPAVISNLFEACHLVNVL-IDHKAQI 408 Query: 374 ESTKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSA 428 + +L A ILG++ + N A K+V L L K ++ + Sbjct: 409 SADDLKELTEAMQLFAFDILGLKNERSANNDAREEAYGKVVDMVLDLRAKAKAEKNWAVS 468 Query: 429 DYIRKQLESKGFILEDYKN 447 D IR L GF ++D K+ Sbjct: 469 DQIRDALADAGFQVKDTKD 487 >gi|57237647|ref|YP_178895.1| cysteinyl-tRNA synthetase [Campylobacter jejuni RM1221] gi|121612326|ref|YP_001000491.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005427|ref|ZP_02271185.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|61216114|sp|Q5HUZ0|SYC_CAMJR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200143|sp|A1VZF0|SYC_CAMJJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57166451|gb|AAW35230.1| cysteinyl-tRNA synthetase [Campylobacter jejuni RM1221] gi|87249406|gb|EAQ72366.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|315058256|gb|ADT72585.1| Cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3] Length = 462 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 234/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMTQSGQTLEE------ITEFYIKSYEEDMRALNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +E+ +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNVSK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLDTPN 453 >gi|163839174|ref|YP_001623579.1| cysteinyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] gi|189082074|sp|A9WLY4|SYC_RENSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|162952650|gb|ABY22165.1| cysteinyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] Length = 493 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 171/498 (34%), Positives = 239/498 (47%), Gaps = 74/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ Y+T ++ +F + +Y CG TV HIG+ R +VFD L R L++ + Sbjct: 3 LRFYDTATAEVRDFAPLVEGKASLYYCGATVQSEPHIGHLRSALVFDQLTRWLQFRGFQT 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V VRN+TDIDDKI+ +A + + K QQF +L P ++PR Sbjct: 63 TV--VRNVTDIDDKILAKAAE------AGEEWWARAYKYEQQFNAAYDKLGITRPDYEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 AT +I +M LIQ++I GHAY A + ++ FD S YGS + + ID+ + Sbjct: 115 ATGNISEMHSLIQDLIDRGHAYPAPDGSGDVYFDVRSWGKYGSLTHQNIDDMQAAADADP 174 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+ DF LWK P EP W SPWG GRPGWH+ECSAM YLG FDIHGGGL Sbjct: 175 R-GKKDARDFALWKGRKPEEPTTASWPSPWGAGRPGWHLECSAMVGKYLGDAFDIHGGGL 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQS A R AN W+HNG + +G KMSKS GN I EL Sbjct: 234 DLRFPHHENEMAQSQAAGR--PFANFWMHNGLVAYQGEKMSKSIGNVIGPGELFAQAS-- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT------------------------VQRLTEAEILL 334 V+R + HYR +D++ VQR+ E E Sbjct: 290 -----PRVVRYYLGQAHYRSVLDYSPESLEEAAAALARIDGFLVNAGANVQRV-EVEDSG 343 Query: 335 SKWPQTSTSKGI----------IDPAVLSALYNDLNTVSAIQALHKLAR---ESTKNHDL 381 + + +G A + A+ +DLN A+ LH+ R + + DL Sbjct: 344 HMYLPPAAKQGFGWFAYAPLSDTPAAFVEAMDDDLNVPKALAVLHETVRAGNSAIASSDL 403 Query: 382 LPI---FNASAHILGI----EVCKEHLNKNISI-AIEKLVQERLILLKM----KKFSSAD 429 + + F A +L + + + N S A+E LVQ RL + K ++ +D Sbjct: 404 VELQKKFEAVLAMLDVLGLSSIATDQAADNGSTHALETLVQTRLQERQQARTEKNWARSD 463 Query: 430 YIRKQLESKGFILEDYKN 447 IR +L G +ED N Sbjct: 464 EIRDELAEAGIKIEDSSN 481 >gi|148657437|ref|YP_001277642.1| cysteinyl-tRNA synthetase [Roseiflexus sp. RS-1] gi|148569547|gb|ABQ91692.1| cysteinyl-tRNA synthetase [Roseiflexus sp. RS-1] Length = 401 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 206/383 (53%), Gaps = 34/383 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +++TL + E + +YVCG T YD H+G+A ++FDVL R +R+ G V Sbjct: 3 LFDTLRGQKAELLIPRDRPLTLYVCGVTPYDTTHVGHAHTFLIFDVLIRYIRHCGG--TV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y +N TD+DD + ERA ++ IP ++ + + T+QFVKD L + P P+A+ Sbjct: 61 RYCQNTTDVDDPLFERAARD--GIPWDE----LARRETEQFVKDCRALNLIPPDFFPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG-----TRVPE 181 I MI +I+ +I GHAY N + +D S+ P YG+ +R E+ + P Sbjct: 115 EEIAAMIPIIERLIELGHAYVRNGNVYYDVSTEPTYGAMARVSGYEELLALANERGNNPN 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K +P DF+LW+RS P EP W SPWGRGRPGWHIEC+AM++ YLG DIHGGG DLI Sbjct: 175 DPLKDDPLDFVLWQRSRPGEPTWPSPWGRGRPGWHIECTAMATRYLGPQLDIHGGGRDLI 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH +EI Q+ + W+H G L+G+KMSKS GN + I + L R Sbjct: 235 FPHHPSEIVQTEPYTGKRPFVHFWVHGGLAWLDGQKMSKSLGNLVFIKDAL-------RQ 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------ 349 A +R +L YR+ ++ + +AE + + ++G DP Sbjct: 288 HSADALRWYLLSFPYRDDFEYVRSDVPQAEQKVGQLKAALAAQG--DPRGERLNPEPFRQ 345 Query: 350 AVLSALYNDLNTVSAIQALHKLA 372 A +AL +DL+T A+ + L+ Sbjct: 346 AYFAALDDDLDTPKALAQISVLS 368 >gi|297619138|ref|YP_003707243.1| cysteinyl-tRNA synthetase [Methanococcus voltae A3] gi|297378115|gb|ADI36270.1| cysteinyl-tRNA synthetase [Methanococcus voltae A3] Length = 559 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 143/420 (34%), Positives = 210/420 (50%), Gaps = 64/420 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN+L + +F+ ++ ++MY+CGPTVYD +H+G+ R + FDV+ R L + Sbjct: 29 IKVYNSLTNTMEKFRPLEQKAVKMYICGPTVYDSSHLGHGRTYVSFDVIKRYLEH--KGY 86 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII +A+ + ++ +N F+KD L P+ Sbjct: 87 NVYLVINFTDIDDKIINKAKN------LKVDCKNVSEENIASFLKDMLSLGVEPANVYPK 140 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------ 178 T I ++I I ++ +AY A + + F+ YG S +D+ K ++ Sbjct: 141 VTQSISEIIDFIGVLVEKDYAYIAKDGVYFNVRKFRQYGRLSNINLDKLKPKSKEAQNNN 200 Query: 179 ---------VPEKYHKKNPADFILWKRSTP-------MEPGWESPWGRGRPGWHIECSAM 222 +K K N DF LWK + P +EP W SPWG+GRPGWHIECS M Sbjct: 201 ENNNENNNENKDKNGKLNVEDFALWKFNEPVFDGDTCIEPAWNSPWGKGRPGWHIECSVM 260 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK-TANIWIHNGFLNLEGRKMSKS 281 S+ Y G+ FDIHGGG DL FPHHENEIAQS E W+H GF+ + G KMSKS Sbjct: 261 SAKYFGECFDIHGGGKDLAFPHHENEIAQS--DSYFEAPCVKYWMHTGFVRVNGEKMSKS 318 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------- 331 GNF+TI ++L + + +RL + HYR P+D++ + L+ + Sbjct: 319 LGNFVTIEDML-------KKYDKDTLRLFFIQRHYRSPLDYSDESLSHVKNTLNKFENAI 371 Query: 332 ---ILLSKWPQTSTSKGIIDPAVLSALY-----------NDLNTVSAIQALHKLARESTK 377 I SK + + D ++ LY +D NTV A++ L+ L + K Sbjct: 372 KKLIYYSKNSEVKNKLTVNDVEFMNILYTCRNKYYDAMDDDFNTVEAVRVLNSLVGATNK 431 >gi|86153279|ref|ZP_01071483.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843005|gb|EAQ60216.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 462 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 233/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTLEE------ITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNVSK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F+ AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKSKDFNIADTIREQLSSKKITLLDTPN 453 >gi|325954818|ref|YP_004238478.1| cysteinyl-tRNA synthetase [Weeksella virosa DSM 16922] gi|323437436|gb|ADX67900.1| cysteinyl-tRNA synthetase [Weeksella virosa DSM 16922] Length = 489 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 168/487 (34%), Positives = 246/487 (50%), Gaps = 52/487 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YN+L + +F I+ + MYVCGPTVY H+GN R + FD++YR L G Sbjct: 6 QLKVYNSLSGQKEKFVPINKEFVGMYVCGPTVYSHVHLGNVRTFMSFDMIYRYL-LLLGY 64 Query: 64 KCVTYVRNITDI--------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLA 115 K V YVRNITD+ +DKI ++AR E P+ I K T F + Sbjct: 65 K-VRYVRNITDVGHLLDDSDEDKIAKKARLEKVE-PME-----IVQKYTVDFHDVLRKFN 117 Query: 116 CLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI----PNYGSFSRRKID 171 P +P AT HI + I + + +I G AYE+N + FD NYG S R I+ Sbjct: 118 NHPPNVEPTATGHIVEQIVITKELIEKGLAYESNGSVYFDVKKYNEKGGNYGELSNRNIE 177 Query: 172 EQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGK 229 + TR + + K+NP DF LWK++ P W SPWG G PGWH+EC+ MS+ YLG+ Sbjct: 178 DLMANTRTLDGQDEKRNPQDFALWKKALPDHIMRWPSPWGEGFPGWHLECTVMSTKYLGE 237 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIHGGG+DL FPHHE EIAQ+ A ++ W+H L L G+KMSKS GN I Sbjct: 238 QFDIHGGGMDLKFPHHECEIAQAKGA-YGQEPVKYWLHANMLTLNGQKMSKSTGNTILPE 296 Query: 290 ELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 ELL F + + VIR M+ HYR +DF+ + + +E ++ + + I+ Sbjct: 297 ELLSGNNSFFDKGFSPMVIRFFMMQAHYRSILDFSNEAILASEKGYTRLMEAYKTIPSIE 356 Query: 349 PAVLS-------------ALYNDLNT-------VSAIQALHKLARES-TKNHDLLPIFNA 387 P S A+ +D NT A++ ++ L + T N + L + Sbjct: 357 PNATSTFDVKAFETKLYEAMDDDFNTPILIAHLFDAVKIINSLKEGTETLNTEDLALLQK 416 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM-------KKFSSADYIRKQLESKGF 440 + ++V + S + KL +L++M K ++ +D IR +L S G Sbjct: 417 IMNDFVVKVLGLKEEETSSDSTHKLDGVLQMLIEMRNQARVDKNWTLSDQIRDELSSLGI 476 Query: 441 ILEDYKN 447 L+D K+ Sbjct: 477 QLKDSKD 483 >gi|288925853|ref|ZP_06419783.1| cysteine--tRNA ligase [Prevotella buccae D17] gi|288337277|gb|EFC75633.1| cysteine--tRNA ligase [Prevotella buccae D17] Length = 496 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 174/506 (34%), Positives = 247/506 (48%), Gaps = 77/506 (15%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++ + IYNTL R F+ + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQTLLIYNTLSRSKERFEPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ + T ++ Sbjct: 61 -GYK-VRYVRNITDVGHMEHDADDGDDKIEKKARLEQLE-PME-----VAQYYTNRYHTA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P+AT HI + L++ I+ +G+AYE+N I FD YG S Sbjct: 113 MNALNVLPPSIEPQATGHIIEQEELVKQILDNGYAYESNGSIYFDIEKYNKDHKYGILSG 172 Query: 168 RK----IDEQKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAM 222 R ++E + T V EK H+ ADF LWKR+ P W SPW G PGWH EC+AM Sbjct: 173 RSLENIVNESRSLTGVGEKRHQ---ADFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAM 229 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 YLG FDIHGGG+DL+FPHHE EIAQ+ A + ++ W+HN + + G+KM KS Sbjct: 230 GRKYLGNHFDIHGGGMDLVFPHHECEIAQA-VASQGDQMVRYWMHNNMITINGQKMGKSL 288 Query: 283 GNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAE 331 GNFIT+ + +P+ IR +L HYR +DF+ ++RL Sbjct: 289 GNFITLEQFFTGSHDSLEQAYSPMTIRFFILSAHYRSTVDFSNDALKASEKGLERLMNGL 348 Query: 332 ILLSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L + P + T D V A+ +D T I L + H + + Sbjct: 349 SDLDRVPVSDTCDEATDQFVKQLRQRCYDAMNDDFQTQLVISYLFEAC------HVVNTL 402 Query: 385 FNASAHI-------------------LGIEVCKEHLNKNISIAIEKLVQERLILLKM--- 422 + AHI LG++ N+ A K+V L L Sbjct: 403 LDHKAHICTDCLKELSETMRLFAFDLLGLKPENGDNNEAREEAYGKVVDMVLSLRSKAKA 462 Query: 423 -KKFSSADYIRKQLESKGFILEDYKN 447 K ++++D IR L GF ++D K+ Sbjct: 463 DKDWTTSDKIRDALADAGFEVKDTKD 488 >gi|163755873|ref|ZP_02162990.1| cysteinyl-tRNA synthetase [Kordia algicida OT-1] gi|161324044|gb|EDP95376.1| cysteinyl-tRNA synthetase [Kordia algicida OT-1] Length = 494 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 249/493 (50%), Gaps = 58/493 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++KIYN+L + F I+ ++ MYVCGPTVY H+GN R + FD+++R L + Sbjct: 6 EQELKIYNSLTNQKEVFTPINEGHVGMYVCGPTVYSNVHLGNVRTFMSFDMIFRYLNHL- 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD+ +DKI ++AR E P+ I + T F Sbjct: 65 GYK-VRYVRNITDVGHLENDAEEGEDKIAKKARLEELE-PME-----IVQRYTIDFHDIL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRR 168 + + P+ +P AT HI + I +++ II +G+ YE N + FD YG S R Sbjct: 118 QKFNFIPPSIEPTATGHIIEQIEIVKEIIANGYGYEVNGSVYFDVHKFNEKNKYGILSNR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 +D+ +R + + KKNP DF LWK++ W SPWG G PGWH+EC+AMS+ Y Sbjct: 178 NLDDLVNNSRELDGQSDKKNPQDFALWKKAEETHIMHWPSPWGEGFPGWHLECTAMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 LG+ FDIHGGG+DL FPHHE+EIAQ +CC N W+H L L G+KMSKS N Sbjct: 238 LGQKFDIHGGGMDLKFPHHESEIAQNEACCG---TSPVNYWMHANMLTLNGKKMSKSTDN 294 Query: 285 FITINELLETKKFGGRSWPAP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 I E+ + AP V R M+ HYR +DF+ L +E +K + T+ Sbjct: 295 NILPGEIFSGESTHLSKGFAPSVARFFMMQAHYRSILDFSNNALLASEKGYNKLMEAMTT 354 Query: 344 KGIIDPA--------------VLSALYNDLNT-------VSAIQALHKLAR-ESTKNHDL 381 + P +AL +D NT A++ +++L ++T + Sbjct: 355 LENLKPIGDKTSFNLSVWKRNCYNALNDDFNTPILIADLFEAVKFINQLKDGKATILAES 414 Query: 382 LPIFNASAH-----ILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 L H ILG+E + +S +E L+ R K F+++D IR + Sbjct: 415 LAELKKCMHAFVFEILGLEQPNASSDDGDALSGVVELLINMRTEARANKDFATSDKIRDE 474 Query: 435 LESKGFILEDYKN 447 L + G L+D K+ Sbjct: 475 LLALGIQLKDGKD 487 >gi|162447013|ref|YP_001620145.1| cysteinyl-tRNA synthetase [Acholeplasma laidlawii PG-8A] gi|187629784|sp|A9NEI9|SYC_ACHLI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|161985120|gb|ABX80769.1| cysteinyl-tRNA synthetase [Acholeplasma laidlawii PG-8A] Length = 434 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 165/463 (35%), Positives = 231/463 (49%), Gaps = 56/463 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGE 63 +KIYN+L KI EF+ I + MYVCGPTVYD HIGN RP++ FDV+ R L+Y YG Sbjct: 2 LKIYNSLSNKIEEFKPIHEKKVNMYVCGPTVYDDIHIGNGRPVVFFDVVKRYLQYLDYG- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y NITD+DDKII+RA++ H + + + T F + ++ P Sbjct: 61 --VKYASNITDVDDKIIDRAQKLHITE------KELATTYTNNFFEIAKKIGGYNFDVTP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN+I +MI I +I G AY+ + + F I +YG S +++ + K G R+ + Sbjct: 113 HATNYIEEMIKFIGELISDGFAYKTQSGVYFRVDKIKDYGILSNQQVKDLKTGVRIDLET 172 Query: 184 HKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+ DF LWK + E G + +PWG GRPGWH EC M++ G DIHGGG DL Sbjct: 173 DKEKDYDFALWKNT---EEGIKYHAPWGDGRPGWHTECVVMTNEIFGGEIDIHGGGFDLK 229 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A A W+H G L+L KMSKS GN I + +L++ Sbjct: 230 FPHHENEIAQS-VAKHDHHLAKYWMHVGRLDLANEKMSKSLGNDIKLKDLVQV------- 281 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------ILLSKWP----QTSTSKGIIDPA 350 + RL +L HYR PI F+ + + + L+KW + ++ +D Sbjct: 282 YNPNAYRLMLLAHHYRAPIQFSDDLIEQYQKAYDKISYTLNKWHFHMILNNINENGLDHE 341 Query: 351 VL----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKE-HLNKNI 405 + + +D T I + KL + DL F + I++ +N NI Sbjct: 342 SMEYFEGFMNDDFATPRVISLIDKLIK------DLNKAFKVENYNTIIQILSTLGINPNI 395 Query: 406 SIAIEKLVQE-------RLILLKMKKFSSADYIRKQLESKGFI 441 +E +Q RL K + AD RK L KGFI Sbjct: 396 LEVLEDDIQNYNNWQQARL----EKNYEKADIYRKPLLDKGFI 434 >gi|317126032|ref|YP_004100144.1| cysteinyl-tRNA synthetase [Intrasporangium calvum DSM 43043] gi|315590120|gb|ADU49417.1| cysteinyl-tRNA synthetase [Intrasporangium calvum DSM 43043] Length = 492 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 148/483 (30%), Positives = 233/483 (48%), Gaps = 59/483 (12%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + +++T R++ F + + MY+CG T HIG+ R + FDVL R L + + Sbjct: 2 SLHLFDTATRELRAFVPRESGKVGMYICGLTTQGAPHIGHIRFAVAFDVLRRWLETAH-D 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT +RN+TDIDDK++ +A + +T +N + L T++P Sbjct: 61 YHVTLIRNVTDIDDKVLRKAAD------AGEDWFALTYRNERLTTDALDALGVKPATYEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT H+P M+ L++ +I GHAY A + ++ FD S P+YGS S + +D+ + Sbjct: 115 RATGHVPDMVALMETLIEKGHAYAAPDGSGDVYFDVRSWPDYGSLSNQSLDDM-VAAEDA 173 Query: 181 EKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK P+ W +P+G GRPGWH+ECSAM+ +LG FDIHGGG Sbjct: 174 DPRGKRDPRDFALWKGRKSDEPLSASWPTPFGSGRPGWHLECSAMARRWLGDEFDIHGGG 233 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DL FPHHENE AQS A A W+HN ++ ++G KM KS GN + + LLE + Sbjct: 234 IDLRFPHHENEQAQSRAAGL--GFARYWLHNAWVTVKGEKMGKSLGNALEVRHLLEHTR- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------PQTS 341 V+R + HYR I++ L EA + + + Sbjct: 291 ------PLVLRYYLTAAHYRSTIEYHSGSLDEAAAAVERIEGFLERAARRGEITSPTDAA 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHIL 392 ++ ++ P + A+ +DL A+ A+H R A +L Sbjct: 345 AARAVLPPEFVEAMDDDLGVSGALAAVHDTVRAGNVALEEGDDDAALAAAVRVVAMTDVL 404 Query: 393 GI-------EVCKEHLNKNISIAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFI 441 GI ++ + +A++ LV +ER + + F+ AD IR +L + G Sbjct: 405 GINPLAPNWATSQDATTTAVEVALDALVRARLEERQSARQERDFARADAIRDELAAVGVA 464 Query: 442 LED 444 + D Sbjct: 465 ITD 467 >gi|158312230|ref|YP_001504738.1| cysteinyl-tRNA synthetase [Frankia sp. EAN1pec] gi|158107635|gb|ABW09832.1| cysteinyl-tRNA synthetase [Frankia sp. EAN1pec] Length = 506 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 162/520 (31%), Positives = 235/520 (45%), Gaps = 91/520 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T R++ F + P ++ +YVCGPTV H+G+ R + FD+L R L Sbjct: 3 LHLYDTRTRRVRPFVPLRPGHVGVYVCGPTVQSPPHVGHIRTALAFDLLRRWL--TQSGL 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N+TDIDDKII A + S+ + ++ T+ F + L PT PR Sbjct: 61 SVTFVQNVTDIDDKIIVNADRAGTSV------WELATRQTRAFEDAYRAVGILPPTISPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP+M+ +I ++ G AY + F + +YG+ S ++ M + Sbjct: 115 ATGHIPEMLEMIAVLVERGFAYPGAGSVWFRVGAFADYGALSHQR--PAAMHPSPESEPG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK P EP W SPWG GRPGWH+ECSAM YLG VFDIHGGGLDL+FPH Sbjct: 173 KADPRDFALWKAVKPGEPSWSSPWGPGRPGWHLECSAMVGKYLGDVFDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCC----------------------------ADRIEKTANIWIHNGFLNLEGR 276 HENE AQS C A + A W+H G L G Sbjct: 233 HENERAQSVCAAELAAAGAAPAAASSRGAVAAGADVPGAGGAGEMARYWMHVGLLTTGGT 292 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA------ 330 KMSKS GN + + L + V+R +L HYR ++++ Q L E+ Sbjct: 293 KMSKSLGNSFFVTDALAAVR-------PQVLRYHLLSAHYRSSLEYSAQTLEESAAAHDR 345 Query: 331 ---------EILLSKWPQ----------TSTSKGIIDPA---VLSALYNDLNTVSAIQAL 368 +IL T D A +AL +DL A+ AL Sbjct: 346 IETFVRNALDILGGPAEAAALAAEADRVAGTEAADADGAWSEFAAALDDDLGVGRALAAL 405 Query: 369 HKLARES----TKNHD-----LLPIFNASAHILGIEVCKE------HLNKNISIAIEKLV 413 + +K H + + +LG++ ++ L + ++ L+ Sbjct: 406 FGVVGRGNQVLSKTHSRELAGWVDVARRMLTVLGLDPVEQWPTAGAELRPALDGVMDVLL 465 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 R + +S AD IR +L + G ++ED GQR Sbjct: 466 DLRSAARARRDYSEADSIRSRLAAAGVVIEDTP---EGQR 502 >gi|6599474|gb|AAF18749.1|AF162864_1 cysteinyl-tRNA synthetase [Rhodothermus marinus] Length = 504 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 152/398 (38%), Positives = 206/398 (51%), Gaps = 38/398 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++YNTL R I ++ + +R+Y CGPTVY +AHIGN R + D++ R+ + G Sbjct: 6 KTLRLYNTLTRSIEPIYPLERNPLRLYACGPTVYTYAHIGNFRSFLTADLIVRVAQAL-G 64 Query: 63 EKCVTYVRNITDI-------------DDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 + V YV N+TD+ DK+ R E N I + TQ F++ Sbjct: 65 WQTV-YVCNVTDVGHLTVDDYADASGQDKLERALRSEEGRRFPN--IWDLARYYTQAFLE 121 Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 D L + P +PRAT HI Q I I+ ++ GHAYE + F S P+YG S + Sbjct: 122 DWQTLKLVEPDVRPRATEHIRQQILAIEQLVKTGHAYETRQGVYFHVPSFPDYGKLSGNR 181 Query: 170 IDEQ--KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 EQ + V + K++P DF LWK+ W SPWG G PGWHIECS MS YL Sbjct: 182 DPEQLARAVRDVVQDPEKRDPRDFALWKKDEKHLMQWYSPWGWGFPGWHIECSVMSMEYL 241 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FD+H GG DLIFPHHE EIAQ+ + A W+H FL +EG KMSKS GNF T Sbjct: 242 GETFDLHLGGEDLIFPHHECEIAQAESLTG-KPLARYWVHTRFLLVEGEKMSKSKGNFFT 300 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 + EL+ + GG+ +R A++ YREP++FT VQR EA + Sbjct: 301 VRELIFPPEAGGQGIDPMALRYALISGKYREPLNFTRKHLRDSIRIVQRYQEAARHVEAA 360 Query: 338 PQTSTSK--------GIIDPAVLSALYNDLNTVSAIQA 367 ++ S I L AL +DLNT A+ A Sbjct: 361 LESDRSGPDRLGDRLSTIYDKTLEALCDDLNTPVALAA 398 >gi|169350895|ref|ZP_02867833.1| hypothetical protein CLOSPI_01669 [Clostridium spiroforme DSM 1552] gi|169292481|gb|EDS74614.1| hypothetical protein CLOSPI_01669 [Clostridium spiroforme DSM 1552] Length = 460 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 249/471 (52%), Gaps = 60/471 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL K EF+ + + +YVCGPTVY++ HIGN RPMIVFDVL R Y G K Sbjct: 16 MRLFNTLTNKKEEFKPLRDGEVSIYVCGPTVYNYVHIGNTRPMIVFDVLRRTFE-YLGYK 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK---DTTR-LACLAPT 120 V +V N TD+DDKII+ A+QE I + T +++K D R L L PT Sbjct: 75 -VIFVSNFTDVDDKIIKAAKQE----------GISEKELTDKYIKAYEDVRRDLNLLFPT 123 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 + PR TN + +I I +++ G+AYE + ++ F S I YG S KI++ G R Sbjct: 124 YAPRVTNTMEAIISFIDDLVKTGYAYEVDGDVYFRVSKIEEYGQLSGIKIEDLVAGASER 183 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL--GKVFDIHGG 236 V E K+ DF LWK+ T ++SPW +GRPGWH EC M + GK+ DIHGG Sbjct: 184 VDENNKKEESTDFALWKK-TDEGIRFDSPWSKGRPGWHTECVVMINDIFQDGKI-DIHGG 241 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENEIAQS A+ W+HN +N++ +KMSKS GN I +++ Sbjct: 242 GQDLKFPHHENEIAQSMACHH-HPIAHTWMHNQMINIDNQKMSKSLGNVIWAKDMI---- 296 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKG- 345 V + ML +HYR P++ T V ++ +S + Q + G Sbjct: 297 ---NDLGCNVYKWFMLSSHYRNPLNLTDAVLNNVKKEVAKVDNVVKTVSLYLQVNGLDGN 353 Query: 346 -----IIDPAVLSALYNDLNT-------VSAIQALHKLARESTKNHD-LLPIFNASAHIL 392 +D V AL +DLNT ++ ++ L++L R K+ + +L +N ++ Sbjct: 354 EYCKETVDVMV-DALEDDLNTSLALTQILNQVKVLNQLMRVKEKDDESILMNYNTLMKMV 412 Query: 393 GI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + V + H +S+ +L ++ L ++K F AD +R +L SKG I Sbjct: 413 TVIGFVYQPH---QLSLDELELYKKWLEAKEVKNFDVADKLRSELISKGII 460 >gi|291296187|ref|YP_003507585.1| cysteinyl-tRNA synthetase [Meiothermus ruber DSM 1279] gi|290471146|gb|ADD28565.1| cysteinyl-tRNA synthetase [Meiothermus ruber DSM 1279] Length = 481 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 180/488 (36%), Positives = 249/488 (51%), Gaps = 64/488 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL+R+ F P + +YVCGPTVY H+G+AR IV+DVL R LRY G K Sbjct: 3 LQIYNTLKRQKEPFVPATPGYVGIYVCGPTVYSDPHLGHARGPIVYDVLRRWLRYQ-GYK 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V NITD+ +DKI+ RA+ E P+ + K + + L Sbjct: 62 -VRFVSNITDVGHLTDDADQGEDKILRRAKLERLE-PME-----VAEKYMWSYFDEMQAL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P PRA HIP+ I L + ++ GHAY N + F S P +G S R I+EQ+ Sbjct: 115 NVLRPDITPRAAGHIPEQIELTEALLERGHAYVVNGSVYFRVKSWPAFGKLSNRDIEEQE 174 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G RV + K++P DF LWKR+ P W SPWG G PGWHIECSAMS YLG FDI Sbjct: 175 AGARVEVREEKEDPRDFALWKRAEPEHIMRWNSPWGEGFPGWHIECSAMSLKYLGDGFDI 234 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+DL FPHHE EIAQ+ A A W+H+ + L G+KM+KS GN IT+ EL Sbjct: 235 HAGGVDLQFPHHEAEIAQAEAAG--HPFARYWMHHYHVLLNGQKMAKSTGNLITLAEL-- 290 Query: 294 TKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAE----ILLSKWPQT-------- 340 R+ P+ IR +L +HYR +DFT + L A+ LL+ + + Sbjct: 291 ------RARYEPMYIRFYLLNSHYRSVLDFTDEGLEAAKNGYLRLLNAYREVRRLLHNAP 344 Query: 341 STSKGIIDPAV-------LSALYNDLNTVSAIQALHKLARESTKNHDLLP---------- 383 + +D A+ +AL +DLNT AI A E K P Sbjct: 345 AGRHAGLDRAIENLRKDFANALNDDLNTAQAIAAFFNFVTELNKALTERPGRESLQAAEQ 404 Query: 384 IF-NASAHILGI---EVCKEHLNKNISIAIEKLVQE-RLILLKMKKFSSADYIRKQLESK 438 +F +LG+ V + L + + L+ E R + + F+ +D IR++L Sbjct: 405 VFAELGEGVLGLFPARVLEHQLGGALLDGLVNLLLEIREEARRNRNFALSDRIRERLIEL 464 Query: 439 GFILEDYK 446 G ++ED + Sbjct: 465 GVVVEDTR 472 >gi|268610792|ref|ZP_06144519.1| cysteinyl-tRNA synthetase [Ruminococcus flavefaciens FD-1] gi|268611696|ref|ZP_06145423.1| cysteinyl-tRNA synthetase [Ruminococcus flavefaciens FD-1] Length = 473 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 170/472 (36%), Positives = 237/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+L K EF + + MY CGPTVY +AHIGN R I+ D+L + LRY + V Sbjct: 3 LYNSLSHKKEEFIPHEEGKVSMYTCGPTVYHYAHIGNLRSYIMEDILEKYLRYTGYD--V 60 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 V NITD+ DDK+++ A++EH ++ I T F D +L Sbjct: 61 KRVMNITDVGHLTSDGDTGDDKMLKGAKREHKTV------MEIAKFYTDAFFDDCKKLNI 114 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P AT +I + I +I +++ G+AYEA I FDTS + Y F+ ++ +G Sbjct: 115 KTPDVVVPATTYIDEFIRVISSLMEKGYAYEAGGNIYFDTSKLDKYYVFNDFNEEDLAVG 174 Query: 177 TR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R V +K+N ADF+LW + E W+SPWG G PGWHIECS +S LG+ Sbjct: 175 VRDGVEADENKRNKADFVLWFTKSKFDDQELKWDSPWGIGYPGWHIECSCISMKNLGEYL 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG+D FPHH NEIAQS A K N W H LN KMSKS G F+T++ L Sbjct: 235 DIHCGGIDNAFPHHTNEIAQS-EAYLGHKWCNYWFHILHLNTNDGKMSKSKGEFLTVS-L 292 Query: 292 LETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEAEILLSKW-----PQTSTSKG 345 LE K + PVI R L +HYR+ + F+ L A+ K P T S G Sbjct: 293 LEEKGY------KPVIYRFFCLQSHYRKSLVFSWDNLDNAKAAYGKLIEKIAPLTQESGG 346 Query: 346 II--------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC 397 I D A AL +D+NT AI L+ + + L + N +LG+++ Sbjct: 347 DIDKAEYERLDKAFREALDSDVNTAMAITVLYDVLKSKANAATKLALINDFDKVLGLDLV 406 Query: 398 -------KEHLNKNISIAIE--KLVQERLILLKMKKFSSADYIRKQLESKGF 440 +E N + I E +LV++R K K F+ AD +R ++ S G+ Sbjct: 407 ANAKLFLEESANASADIPAEVMELVEQRKEARKAKDFALADELRDKIASLGY 458 >gi|86152065|ref|ZP_01070277.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|85840850|gb|EAQ58100.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94] Length = 462 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 233/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTLEE------ITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE Q C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEATQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNISK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLDTPN 453 >gi|256824257|ref|YP_003148217.1| cysteinyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] gi|256687650|gb|ACV05452.1| cysteinyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 133/337 (39%), Positives = 197/337 (58%), Gaps = 33/337 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++++ R++ +F P +Y+CG T HIG+ R + FDVL R + +G + Sbjct: 3 LRLHDSATREVRDFVPRVPGRASIYICGLTTQTSPHIGHLRFAVAFDVLRRWMERGHGLE 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR----LACLAPT 120 VT VRN+TDIDDKI+ ++ EH S+ ++ +Q++ ++T+ + P+ Sbjct: 63 -VTLVRNVTDIDDKILAKS-AEH---------SVAWNEWSQRYERETSAALETIGVRPPS 111 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN---EIIFDTSSIPNYGSFSRRKIDEQKMGT 177 ++PRAT H+P MI L++ +I GHAY A++ ++ FD S P YG +R+ ID+ T Sbjct: 112 YEPRATGHVPDMIELMERLIERGHAYPADDGSGDVYFDVRSWPAYGELTRQSIDDMTPAT 171 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + K++P DF LWK + EP W +PWGRGRPGWH+ECSAM+ +LG+ FDIH Sbjct: 172 DA-DPRGKRDPRDFALWKGAKADEPHTATWPTPWGRGRPGWHLECSAMAWRWLGEEFDIH 230 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHENE AQS A N W+HNG L G KMSKS GN +T+ EL + Sbjct: 231 GGGNDLRFPHHENEQAQSRAAGF--GFTNFWLHNGMLTTGGEKMSKSIGNTLTVQELTKI 288 Query: 295 KKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEA 330 + P+ +R + HYR +++T L EA Sbjct: 289 YR--------PLAVRWLLATVHYRSALEYTPTSLDEA 317 >gi|326798885|ref|YP_004316704.1| cysteinyl-tRNA synthetase [Sphingobacterium sp. 21] gi|326549649|gb|ADZ78034.1| cysteinyl-tRNA synthetase [Sphingobacterium sp. 21] Length = 487 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 171/489 (34%), Positives = 244/489 (49%), Gaps = 53/489 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IYNTL RK F+ I+P + +YVCGPTVY H+GN R + FD++YR L Y Sbjct: 1 MSSNLVIYNTLSRKKEIFEPINPPMVGLYVCGPTVYSDVHLGNCRTFVSFDLIYRYL-LY 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD DDK ++A+ E P+ I K T F D Sbjct: 60 SGYK-VRYVRNITDAGHLEGDRDEGDDKFAKKAKLEQLE-PME-----IVQKYTIGF-HD 111 Query: 111 TTRL-ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFS 166 RL L P+ +P AT HI + I +++ II +G+AYE N + FD S +Y + Sbjct: 112 VLRLFNTLPPSIEPTATGHISEQIEMVKQIIANGYAYEVNGTVYFDVEKYSKNNDYTILT 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R++++ TR + + KK DF LW ++ P W SPWG G PGWHIECSAMS+ Sbjct: 172 NRQLEDMLNNTRELGGQDEKKGRLDFALWIKAKPEHIMRWPSPWGVGFPGWHIECSAMSN 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL HH NEIAQS + A W+H L + G +MSKS GN Sbjct: 232 KYLGHQFDIHGGGMDLAATHHTNEIAQSQACNHT-NPAKYWMHTNMLTVNGARMSKSAGN 290 Query: 285 FITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 EL R + +R ML HYR +DF+ +RL A L Sbjct: 291 GFLPRELFTGDHPLLTRGYSPMSVRFFMLQAHYRSTLDFSNEALEASDKGYRRLMNAIAL 350 Query: 334 LSKWPQTSTSK---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA- 389 L K +++S+ I ++A+ +D N+ I L ++ R +D +A Sbjct: 351 LPKLKASASSEVDFEEIKQRFIAAMNDDFNSPVLIAELFEVVRIINSVYDNKTKIDAKGL 410 Query: 390 ------------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 +ILG++ + N ++ ++ +++ R K ++++D IR L+ Sbjct: 411 AQLNTLVNDFVFNILGLKDDQTENNGDLEKLMDFIIKLRQEAKASKDYATSDLIRNSLQE 470 Query: 438 KGFILEDYK 446 GF L+D K Sbjct: 471 MGFQLKDSK 479 >gi|153951726|ref|YP_001398277.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97] gi|166200142|sp|A7H447|SYC_CAMJD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|152939172|gb|ABS43913.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97] Length = 462 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 236/468 (50%), Gaps = 55/468 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LANGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSCQTLEE------ITEFYIKSYEEDMRTLNVLDPDFKPRATHYIIAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSSRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKIYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNISK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISNANLELDKESKNKILKQNIKEALSELAKIFGFGFMDATLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 IEKL+ ER K K F++AD IR+QL SK L D N ++M Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLSSKKITLLDTPNGTIWEKM 460 >gi|157415073|ref|YP_001482329.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116] gi|172047114|sp|A8FLL5|SYC_CAMJ8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157386037|gb|ABV52352.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116] gi|307747715|gb|ADN90985.1| Cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1] gi|315932527|gb|EFV11462.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327] Length = 462 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 234/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LANGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTLEE------ITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R +L +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNISK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +ES ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR++L SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIRERLSSKKITLLDTPN 453 >gi|299142423|ref|ZP_07035555.1| cysteine--tRNA ligase [Prevotella oris C735] gi|298576145|gb|EFI48019.1| cysteine--tRNA ligase [Prevotella oris C735] Length = 496 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 176/499 (35%), Positives = 251/499 (50%), Gaps = 63/499 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++ + IYNTL R+ F+ + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQNLIIYNTLTRQKELFKPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQYYTNRYHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD YG S Sbjct: 113 MEALNVLPPSIEPHATGHIIEQEELVKEILKNGYAYESNGSIYFDVEKYDKEHKYGILSG 172 Query: 168 RKIDEQKMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R + + +R + KKN DF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLTDMINNSRELQGVGEKKNQVDFALWKKAQPEHIMRWPSPWSVGFPGWHCECTAMGRK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ + W+HN + + G+KM KS GNF Sbjct: 233 YLGSHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVHYWMHNNMITINGQKMGKSLGNF 291 Query: 286 ITINELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 IT+ + +++ IR +L HYR +DF+ +RL A L Sbjct: 292 ITLEQFFTGNHESLTQAYTPMTIRFFILSAHYRGTVDFSNEALEAAQKGYERLMNAFDDL 351 Query: 335 SKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQAL------------HK--LAR 373 + P +S D V A+ +DL T I L HK + Sbjct: 352 ERVPVSSHCDAETDKFVKAFRQRCYEAMNDDLQTPLVISYLFEACHLINTLLDHKAEICA 411 Query: 374 ESTKN-HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSSA 428 + K D+L +F + +LG++ K N A K+V L L K ++++ Sbjct: 412 DCLKELSDVLKLF--AFDLLGLQSEKGANNVAREEAYGKVVDMVLDLRAKAKADKDWTTS 469 Query: 429 DYIRKQLESKGFILEDYKN 447 D IR L + GF ++D K+ Sbjct: 470 DKIRDALAAAGFEVKDTKD 488 >gi|283954375|ref|ZP_06371896.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414] gi|283794174|gb|EFC32922.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414] Length = 463 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 169/480 (35%), Positives = 241/480 (50%), Gaps = 57/480 (11%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 L+ I E +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + R Sbjct: 4 LDSVIKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LANGNR-VKFAR 61 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TDIDDKI+++ + S+ IT + + +D L L P +PRAT++I Sbjct: 62 NYTDIDDKILKKMAKSGQSLEE------ITEFYIKSYEEDMKALNVLDPDFKPRATHYIA 115 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 M+ LI+ + Y + I FDTS Y S S R ++E +R+ + K+N +D Sbjct: 116 AMLDLIKKLAKGEFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESD 173 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F+LWK E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE A Sbjct: 174 FVLWKFD---ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAA 230 Query: 251 QS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 Q C RI ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R Sbjct: 231 QCRCGCKRI--LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRF 281 Query: 310 AMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVL 352 +L +HYR ++++ L ++ L K+ + K I +L Sbjct: 282 YLLSSHYRSHFNYSLSDLENSKKRLDKFYRLKKRVELSEISDFDVLNNIEIKSEIAKQIL 341 Query: 353 SALYNDLNTVSAIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL 401 AL +DLN A+ L +L +ES ++ + A I G L Sbjct: 342 KALNDDLNISKALALLDDFISNANLELDKESKNKFLKQNIKEALSELAKIFGFGFMDTTL 401 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +K IE L+ ER K K FS+AD IR+QL SK IL D N ++M Sbjct: 402 YFQWGVSKEEQEEIEGLILERTEAKKNKDFSTADAIREQLSSKKIILLDTPNGTIWEKMN 461 >gi|260910729|ref|ZP_05917387.1| cysteine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260635145|gb|EEX53177.1| cysteine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 536 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 197/363 (54%), Gaps = 25/363 (6%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F+ + N+ MYVCGPTVY H+G+ARP I FDV++R L++ G K V Sbjct: 47 IYNTLTRQKERFEPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDVVFRYLQHL-GYK-V 104 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 YVRNITD+ DDKI ++AR E P+ I T + L Sbjct: 105 RYVRNITDVGHLEHDADDGDDKIAKKARLEQLE-PME-----IAQHYTNTYHAAMQLLNV 158 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS---SIPNYGSFSRRKIDEQ 173 L P+ +P+A+ HI + L++ I +G AYE+N I FD + YG S R +++ Sbjct: 159 LPPSIEPQASGHIIEQEELVKKIFANGFAYESNGSIYFDIAKYNQTHRYGILSGRNLEDV 218 Query: 174 KMGTRVPEKY-HKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 +R + K+N ADF LWK + P W SPWG G PGWH EC+AM YLG F Sbjct: 219 LDASRQLDGVGEKRNQADFALWKHAQPEHIMRWPSPWGEGFPGWHCECTAMGRKYLGNQF 278 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DL+FPHHE EIAQ+ ++ E+ W+HN + + G+KM KS GNFIT+ + Sbjct: 279 DIHGGGMDLVFPHHECEIAQAVASEG-EQMVRYWMHNNMITINGQKMGKSLGNFITLEQF 337 Query: 292 LETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +P+ IR +L HYR +DF+ + L +E L + I PA Sbjct: 338 FNGSHSALEKAYSPMTIRFFILSAHYRGTVDFSNEALQASEKGLERLLNGIADLQRIQPA 397 Query: 351 VLS 353 S Sbjct: 398 KAS 400 >gi|319442435|ref|ZP_07991591.1| cysteinyl-tRNA synthetase [Corynebacterium variabile DSM 44702] Length = 474 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 151/488 (30%), Positives = 246/488 (50%), Gaps = 68/488 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T R++ +F + + +Y+CG TV HIG+ R + FD+L R + K Sbjct: 3 LRIFDTATRELRDFVPLQEGHASVYLCGATVQSIPHIGHVRSGVAFDIL----RNWLAAK 58 Query: 65 C--VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN+TDIDDKI+ ++ + N + + + F + L P+ + Sbjct: 59 GLDVAFVRNVTDIDDKILAKSAEN------NRPWWEWAATHERAFTRAYDLLGVTPPSIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIF-DTSSIPNYGSFSRRKIDEQKMG-TRVP 180 PRAT H+P+MI I+ II +G Y + ++ T+ +P+YG S +K+DE G VP Sbjct: 113 PRATGHVPEMIAYIRRIIDNGLGYATEDGSVYCRTAQVPDYGFLSHQKLDELDQGEDAVP 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF +WK + P EPGWE+PWG GRPGWHIECSAMS+ YLG FDIH GG+DL Sbjct: 173 ---GKEDPRDFAMWKAAKPGEPGWETPWGFGRPGWHIECSAMSNKYLGGAFDIHAGGMDL 229 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE AQ+ A + AN W+HNG++ + G KMSKS GN +++ +L + Sbjct: 230 QFPHHENEAAQAHAA--GDAFANHWMHNGWVTMSGEKMSKSLGNVLSVPNVLTKVR---- 283 Query: 301 SWPAPV-IRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSKGIID---- 348 P+ +R + HYR ++++ + L +A E L + + ++ ++ Sbjct: 284 ----PIELRWYLGSAHYRSMLEYSEKALQDAAAGFRKIEKFLDRAVELLGAEAVVAGAWR 339 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIE---- 395 PA AL +DL +A+ + RE D + A +LG++ Sbjct: 340 PAFEEALDDDLGVPTALAVIQDAVREGNAALDAGDTAAVQRIAGEVRAMMGVLGVDPLSD 399 Query: 396 ----------------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + + + ++ ++ R K +++AD +R +L+ G Sbjct: 400 TWAGEDSKGRGQGIGAGASDEAIGALDVLVKAELERRATARAEKDWATADAVRDRLKDAG 459 Query: 440 FILEDYKN 447 + D + Sbjct: 460 IAVADSAD 467 >gi|290958497|ref|YP_003489679.1| cysteinyl-tRNA synthetase [Streptomyces scabiei 87.22] gi|260648023|emb|CBG71131.1| putative cysteinyl-tRNA synthetase [Streptomyces scabiei 87.22] Length = 482 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 170/480 (35%), Positives = 238/480 (49%), Gaps = 55/480 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +++ + +Y+TL R T F + S +RMYVCGPTVY HIGN R + D+ R+L + Sbjct: 10 LRQSLSLYSTLSRTSTHFTPAEDSAVRMYVCGPTVYSAPHIGNMRTYLFADIARRVLGF- 68 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 V NITD+ DDK+ + A + K T+ F+ D Sbjct: 69 -AGYSVQAAMNITDVGHLTSDADSGDDKMAKAAAA------ERATAWEVAEKYTEIFLAD 121 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 RL L RAT HIPQ I LIQ + G Y N+ + FDTS +P+YG + Sbjct: 122 AGRLNILPMDLVLRATQHIPQQIALIQRLEDKGVVYRTNDGMYFDTSFVPDYGKLTPNDT 181 Query: 171 DEQ-KMGTRVPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSH 225 E + G RV K++ DF LWK S P P W SPWG G PGWHIECSAM+ Sbjct: 182 REHLRAGERVAMG-EKRHATDFALWKFSPPEAPKRDMEWPSPWGVGFPGWHIECSAMAME 240 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGN 284 YLG+ D+H GG+D I HH NEIAQS A + + W+H FL LEG R+M KS GN Sbjct: 241 YLGESLDLHLGGIDHIPVHHTNEIAQSETATGV-PFSRWWMHGAFLTLEGERRMGKSEGN 299 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------W 337 IT++ L+E + R +L++HYR P+ F+ L +A L + W Sbjct: 300 KITLDTLVE------EGFDPLEFRYLVLLSHYRSPLSFSPTALEQAANALRRLRHRVAAW 353 Query: 338 PQTSTSKGIIDPAV---------LSALYNDLNTVSAIQALHKLARE-STKNHDLLPIFNA 387 + S G P + AL DLN A+ L +LAR+ + L + A Sbjct: 354 -KKSVGAGAELPDCPDSPYLTRFVEALAEDLNMPRAVAELWQLARDPDVDDATKLSLILA 412 Query: 388 SAHILGIEVCKEHLNK---NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+++ E +K I A+ +L QER L K+F +D +R Q+ + G+ ++D Sbjct: 413 FDEVLGLDL--ESASKEPAEIPDAVVRLAQERWELRSAKQFEESDKLRAQILAAGYNVQD 470 >gi|225011916|ref|ZP_03702354.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium MS024-2A] gi|225004419|gb|EEG42391.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium MS024-2A] Length = 492 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 167/487 (34%), Positives = 250/487 (51%), Gaps = 66/487 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +YN+L K F++I P+++ MYVCGPTVY H+GN R I FD+++R L++ Sbjct: 1 MDSTLVLYNSLNGKKETFKSILPNHVGMYVCGPTVYSNVHLGNCRTFISFDLIFRYLQHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+I ++AR E P+ + + T F Sbjct: 61 -GYK-VRYVRNITDAGHLENDADEGEDRIAKKARLESIE-PME-----VVQRYTVDFRDT 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT----SSIPNYGSFS 166 + L P+ +P AT HI + I LI+ II G+AYE N + FD IP YG S Sbjct: 113 MAQFNALVPSIEPTATGHIVEQIELIKEIIEQGYAYEVNGSVYFDVIKFNKDIP-YGKLS 171 Query: 167 RRKIDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 R I++ TR + + KKNP DF LWK++ P+ W SPW G PGWH+EC+AMS+ Sbjct: 172 GRNIEDLIHNTRTLDGQSDKKNPQDFALWKKAEPVHIMRWPSPWSEGFPGWHLECTAMST 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA--NIWIHNGFLNLEGRKMSKSN 282 YLG FDIHGGG+DL FPHHE EIAQ A+ I K + N W+H L L G+KM+KS Sbjct: 232 KYLGSQFDIHGGGMDLKFPHHECEIAQ---AESIHKKSPVNYWLHANMLTLNGKKMAKST 288 Query: 283 GNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTE-- 329 GN I E+ + + +P+ +R +L HYR +D + QRL + Sbjct: 289 GNNILPGEMFSGENSIFKKAFSPMTVRFFILQAHYRSIVDLSESALEASEKGFQRLIDGI 348 Query: 330 ------------AEILLSKWPQ---TSTSKGIIDPAVLSALYNDLNTVSAIQ-ALHKLAR 373 ++ L KW + + P +++ L++ + ++A+ L ++ + Sbjct: 349 SKLERLPIGDKTSDFDLVKWKNKCYAAMNDDFNSPLLIAHLFDAVKYINAVDNGLQQINK 408 Query: 374 ESTKNHDLLPIFNA-SAHILGI----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 + K DL + N +LG+ + KE+ + A+ +++ R K F ++ Sbjct: 409 DDLK--DLSKLINDFFFDVLGLLNEDDNNKENGGVQLDGALNLILELRNKARASKDFETS 466 Query: 429 DYIRKQL 435 D IR L Sbjct: 467 DLIRDSL 473 >gi|255530399|ref|YP_003090771.1| cysteinyl-tRNA synthetase [Pedobacter heparinus DSM 2366] gi|255343383|gb|ACU02709.1| cysteinyl-tRNA synthetase [Pedobacter heparinus DSM 2366] Length = 486 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 242/490 (49%), Gaps = 56/490 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K + +YNTL R F+ + N+ MYVCGPTVY H+GN R I FD+++R L+Y Sbjct: 1 MDKGLHLYNTLTRTKELFEPLHAPNVGMYVCGPTVYSDVHLGNCRTFISFDLIFRYLKYS 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD DDK +RA+ E P+ I K T F Sbjct: 61 -GYK-VRYVRNITDAGHLEGDRDEGDDKFAKRAKLEQLE-PME-----IVQKYTLGFHDV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSR 167 L P+ +P AT HI + I +I+ I+ +G+AYEAN + FD S+ NY + Sbjct: 113 LRMFNTLPPSIEPTATGHIIEQIEMIKVIMDNGYAYEANGTVYFDVEKYSASYNYTILTN 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +++ TR + + K+ DF LW ++ P W SPWG G PGWHIECSAMS+ Sbjct: 173 RNLEDMLANTRELGGQDEKRGRLDFALWIKAKPETIMRWPSPWGIGFPGWHIECSAMSAK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL HH NEIAQS + ++ A W+H L + G +MSKS GN Sbjct: 233 YLGEEFDIHGGGMDLAATHHTNEIAQSEACNH-KQPAKYWMHTNMLTVNGARMSKSAGNG 291 Query: 286 ITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 EL R + ++ ML HYR +DF+ +RL A LL Sbjct: 292 FLPGELFTGDHPLLDRGYSPMTVKFFMLQAHYRSTLDFSNEALDASEKGFRRLMNAVTLL 351 Query: 335 SKWPQTSTSKGIIDPAV---LSALYNDLNTVSAIQALHKLAR---------------EST 376 K + S IDP + A+ +D N+ I L + R E Sbjct: 352 DKLVPAAESDFEIDPIASNCIRAMNDDFNSPVVIAELFEATRIINIVYDGKGKISVAELG 411 Query: 377 KNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 K L+ F I G++ +E N ++ +E ++ R + K ++++D IR L+ Sbjct: 412 KLKKLVKDF--VFDIFGLK-DEEASNTELNDVLEMMIDIRKAAKENKDYATSDKIRVGLQ 468 Query: 437 SKGFILEDYK 446 S G L+D K Sbjct: 469 SMGIQLKDSK 478 >gi|332879668|ref|ZP_08447361.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682385|gb|EGJ55289.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 502 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 166/494 (33%), Positives = 247/494 (50%), Gaps = 56/494 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK ++KI+N+L + F + +N+ MYVCGPTVY H+GN R + FD +YR L++ Sbjct: 11 MKHQLKIFNSLTGEKEVFVPLHENNVGMYVCGPTVYSNVHLGNVRTFMSFDFIYRALKFL 70 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 71 -GYK-VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKV 122 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFS 166 L PT +P AT HI + I L + ++ G AYE+N + FD NYG S Sbjct: 123 LEIFNLLPPTIEPTATGHILEQIQLTEKLLKDGFAYESNGSVYFDVLEYNKRGLNYGELS 182 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RR I+E TR + + K+NP DF LWK+++P W SPWG G PGWH+EC+ MS+ Sbjct: 183 RRNIEELFANTRDLDGQGEKRNPQDFALWKKASPAHIMRWASPWGDGFPGWHLECTVMST 242 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL FPHHE EIAQ A E W+H L + G++MSKS GN Sbjct: 243 KYLGNQFDIHGGGMDLKFPHHECEIAQG-KAGHGESPVRYWMHANMLTMNGQRMSKSTGN 301 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--- 340 +I +L+ F + + VIR + HYR +D + + + AE ++ + Sbjct: 302 YILPMQLITGNNTFFEKPFAPAVIRFCFMQAHYRSVLDISNEAMLAAEKGFTRLMEAMKI 361 Query: 341 --STSKGIIDPAVL----------SALYNDLNT-------VSAIQALHKLARESTK---- 377 + + P L AL +D N+ A++ + +L K Sbjct: 362 LNELTTEVTHPTALPIAEWKQKCYEALLDDFNSPILIAHLFEAVKWVFQLKNGEEKISVE 421 Query: 378 -NHDLLPIFNASAH-ILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRK 433 ++L + NA +LG++ + + N + ++ L+ R+ K ++ +D IR Sbjct: 422 ELNELKTLMNAFVFDVLGLQAEQLAADNNDKLDGVLQLLIDMRMEARANKDWALSDKIRD 481 Query: 434 QLESKGFILEDYKN 447 L G L+D K+ Sbjct: 482 ALLPLGIQLKDGKD 495 >gi|215697564|dbj|BAG91558.1| unnamed protein product [Oryza sativa Japonica Group] Length = 399 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 149/399 (37%), Positives = 210/399 (52%), Gaps = 71/399 (17%) Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L CL P+ +PR ++HI Q+I +I+ II + AY ++ F + P YG S RK+D+ Sbjct: 4 LHCLPPSVEPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKLDDN 63 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G RV KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDI Sbjct: 64 RAGERVAVDERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHSFDI 123 Query: 234 HGGGLDLIFPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 HGGG DLIFPHHENEIAQS CC I N WIHNGF+N+ +KMSKS GNF+TI + Sbjct: 124 HGGGEDLIFPHHENEIAQSRAACCDSSI----NYWIHNGFVNVNSQKMSKSLGNFVTIRK 179 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 + E + +R+ +L THYR PI++T+++L A L QT Sbjct: 180 VTEL-------YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQ 232 Query: 341 -----------STSKGI--IDPAVLSALYNDLNTVSAIQALHK---------LARESTKN 378 +T+ I + +++ +DL+T A+ A+ + R+ K Sbjct: 233 HQSKAGDPLPVNTTNCIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQ 292 Query: 379 HDLLPIFNA----------------SAHILGIEVCKEHLNKNISIAIEKLVQ---ERLIL 419 L +A S++ ++ +E + S+ E+++Q ER Sbjct: 293 EKRLESLSAMEEKIRMVLSVLGLLPSSYYEALQQLREKALRRASMTEEQVLQKIEERTSA 352 Query: 420 LKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K K++ +D IRK+L + G L D PD T W+ Sbjct: 353 RKAKQYEKSDEIRKELAAVGIALMD--GPDG----TTWR 385 >gi|156744229|ref|YP_001434358.1| cysteinyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] gi|156235557|gb|ABU60340.1| cysteinyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] Length = 401 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 200/381 (52%), Gaps = 30/381 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +++TL + E + +YVCG T YD H+G+A ++FDVL R +R+ G V Sbjct: 3 LFDTLRGQKAELLIPRDRPLTLYVCGVTPYDTTHVGHAHTFLIFDVLIRYIRHCGG--TV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y +N TD+DD + ERA ++ IP ++ + + T+QFVKD L + P P+A+ Sbjct: 61 RYCQNTTDVDDPLFERAARD--GIPWDE----LARRETEQFVKDCQALNLIPPDFFPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG-----TRVPE 181 I MI +I+ ++ GHAY N + FD S+ P YG+ +R E + P Sbjct: 115 EEIATMIPIIERLVELGHAYVRNGNVYFDVSTEPTYGAMARVDGYEALLALANERGNNPN 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K +P DF+LW+RS P EP W SPWGRGRPGWHIEC+AM++ YLG DIHGGG DLI Sbjct: 175 DPLKDDPLDFVLWQRSRPGEPTWPSPWGRGRPGWHIECTAMATRYLGPQIDIHGGGRDLI 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH +EI Q+ + W+H G L+G+KMSKS GN + I + L+ Sbjct: 235 FPHHPSEIVQTEPYTGKRPFVHFWVHGGLAWLDGQKMSKSLGNLVFIKDALQQHS----- 289 Query: 302 WPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAV 351 A +R +L YR+ ++ V+RLT A + Sbjct: 290 --ADALRWYLLSFPYRDDFEYVRSDVPLAVQQVERLTAALAAQGDSKGEPLNAEPFYQTY 347 Query: 352 LSALYNDLNTVSAIQALHKLA 372 +AL NDL+T A+ + L+ Sbjct: 348 FAALDNDLDTPKALAQIGALS 368 >gi|291277354|ref|YP_003517126.1| cysteinyl-tRNA synthetase [Helicobacter mustelae 12198] gi|290964548|emb|CBG40401.1| cysteinyl-tRNA synthetase [Helicobacter mustelae 12198] Length = 486 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 242/475 (50%), Gaps = 49/475 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIY++ ++ I +R+YVCGPTVYD AH+G+AR IVFD+L R L Sbjct: 16 RASMKIYDSKSKQKVPLVPIKEKEVRIYVCGPTVYDDAHLGHARSSIVFDLLRRTLN-LS 74 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G K T V+N TDIDDKII ++ IP+ + +T ++ D RL L P Sbjct: 75 GYK-TTLVKNFTDIDDKIIHKSLNH--QIPLEE----VTQTYIHSYIHDMDRLNVLPPDI 127 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 P+AT + +I ++ ++ GHAY++ N ++ D P YGS S+R +D++ +R+ Sbjct: 128 HPKATQSLGAIISFVERLLHRGHAYQSENGDVYLDVKKDPLYGSLSQRGVDDENQ-SRIQ 186 Query: 181 EKYHKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGK-----VFDIH 234 E KK+P DF+LWK + G+ESP+G GRPGWHIECSAM +L DIH Sbjct: 187 ENKEKKDPRDFVLWKTYKGEDDIGYESPFGFGRPGWHIECSAMIDEHLAYKDEDFCIDIH 246 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL+FPHHENE +Q+ CA E A W+HN +++ G KMSKS GN + + L Sbjct: 247 GGGADLLFPHHENEASQTRCAYDSE-LAKYWMHNEMVHINGEKMSKSLGNSFFVKDAL-- 303 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------WPQTSTSKGI 346 KF ++R +L THYR + F + L ++ L K P Sbjct: 304 -KFH----DGEILRNYLLTTHYRAILHFNEEDLLMSKKRLDKIYRLKKRALPVQGVRDKD 358 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP--------IFNASAHI---LGIE 395 + +L + +DLN + L + + ++ D P I + A I LGI Sbjct: 359 FEARLLHPMQDDLNISQTLSVLDEFLAHANQSLDQNPKDKALHANIISNLAFIEALLGIG 418 Query: 396 VCKEHLNKNISIAIEKL------VQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + ++ EK+ + ER K K + AD IR++L +G + D Sbjct: 419 GKDGKVYFQLGVSEEKVKWIEEKIHERKNAKKEKNYVLADEIRQELHEEGIAIMD 473 >gi|228473829|ref|ZP_04058571.1| cysteine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624] gi|228274670|gb|EEK13504.1| cysteine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624] Length = 494 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 168/495 (33%), Positives = 241/495 (48%), Gaps = 58/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++KI+N+L + F + +N+ MYVCGPTVY H+GN R + FD +YR LR+ Sbjct: 1 MNHQLKIFNSLTGEKEIFVPLHANNVGMYVCGPTVYSNVHLGNVRTFMSFDFIYRALRFL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 61 -GYK-VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFS 166 L PT +P AT HI + I L + ++ G AYE+N + FD NYG S Sbjct: 113 LEIFNLLPPTIEPTATGHILEQIQLTEKLLKDGFAYESNGSVYFDVLEYNRRGLNYGELS 172 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RR I+E TR + + K+NP DF LWK+++P W SPWG G PGWH+EC+ MS+ Sbjct: 173 RRNIEELFANTRDLDGQGEKRNPQDFALWKKASPAHIMRWASPWGDGFPGWHLECTVMST 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL FPHHE EIAQ A + W+H L + G++MSKS GN Sbjct: 233 KYLGDQFDIHGGGMDLKFPHHECEIAQG-KAGHGQSPVRYWMHANMLTMNGQRMSKSTGN 291 Query: 285 FITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 +I +L+ F + + VIR + HYR +D + RL EA + Sbjct: 292 YILPMQLISGDNTFFEKPFAPAVIRFCFMQAHYRSVLDISNEAMLAAEKGFNRLMEAVKI 351 Query: 334 LSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQALHKLAR------------E 374 L++ G + + AL +D N I L + + Sbjct: 352 LNELTSEIEHPGPLSSEIEQWKQKCYDALLDDFNAPILIAHLFEAVKWIFQVKSGEEKIS 411 Query: 375 STKNHDLLPIFNASAH-ILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 + +L + NA +LG+ E N + ++ L+ R+ K F+ +D I Sbjct: 412 IQELEELRSLVNAFVFDVLGLKNEELNAANNDRLDGVLQLLINMRMEARANKDFALSDKI 471 Query: 432 RKQLESKGFILEDYK 446 R +L + G L+D K Sbjct: 472 RDELLALGIQLKDGK 486 >gi|193084115|gb|ACF09782.1| cysteinyl-tRNA synthetase [uncultured marine crenarchaeote KM3-153-F8] Length = 469 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 234/476 (49%), Gaps = 50/476 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K +NTL RK F+ N+ +Y CGPTVYD+AHIGN R + D+L R L Y G K Sbjct: 4 LKFFNTLGRKKESFKHDKNKNVLIYCCGPTVYDYAHIGNFRTFLFEDILIRYLEYK-GYK 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +V NITDIDDK I+ + + ++P+ + T K F +D +L PR Sbjct: 63 -IKFVMNITDIDDKTIKASSEN--NVPLKE----YTKKYEDAFFEDIKKLRIRKAESYPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS-RRKIDEQKMGTRVPEKY 183 AT HI ++ I+ + AYE+N I F S YG+ S + + ++Y Sbjct: 116 ATEHIDNIVTHIKKLKELEFAYESNGSIYFSISKFKKYGTLSGEKNKNINNKKPINSDEY 175 Query: 184 HKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K DF LWK + W++ G+GRPGWHIECS MS+ L DIH GG+DLI Sbjct: 176 SKNEIQDFALWKAWVQDDNNVFWDNELGKGRPGWHIECSVMSTKLLNDSIDIHAGGVDLI 235 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+ K W+H L +EG+KMSKS GNF T+ +LL+ Sbjct: 236 FPHHENEIAQAEALTN-NKFVRYWLHAEHLIVEGKKMSKSEGNFFTLRDLLK------EG 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA------------EILLSK---------WPQT 340 + IRL ++ +HYR ++FT+ L +A ++ LSK + T Sbjct: 289 YEPLTIRLLLISSHYRSQLNFTINGLKQASENIKRLQEIYTKVKLSKTKNGYDEELFKHT 348 Query: 341 STSKGIID---------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHI 391 TSK + P LS ++N + ++ + + ++L F I Sbjct: 349 KTSKEKFERAMDDDFNMPVALSVIFNYVRIIN--KYIDNTELTEMNKQEILDFFVKIDQI 406 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 L + KE IE+L++ R + K + AD IRK+L GFI+ED N Sbjct: 407 LDVVNTKEKDQIFPEPRIEELIRRRNEARERKDWKKADEIRKELLKSGFIIEDTSN 462 >gi|298246065|ref|ZP_06969871.1| cysteinyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] gi|297553546|gb|EFH87411.1| cysteinyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] Length = 395 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 140/404 (34%), Positives = 207/404 (51%), Gaps = 35/404 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL + I F + +YVCG T YD H+G+A + FD L R L Sbjct: 1 MKLFNTLTQSIDPFTPLKQGLATLYVCGVTPYDTTHLGHAFTYVSFDTLIRYLEAQ--GI 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TDIDD ++ +AR+ +N A + + T +F+ D L P R Sbjct: 59 TVRYVQNVTDIDDDVLRKARE------LNMAWDELGRRETARFLGDMDALNVRRPDVYAR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR--------RKIDEQKMG 176 AT+ IP ++ ++Q+++ G AY + + + P++G+ R +D Sbjct: 113 ATDAIPDIVEIVQDLVEKGLAYVSEGCVFYSVKQDPDFGTLGRAIGLNDYQSMLDVANER 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 PE K +P DF+LW+ P EP W SPWG GRPGWHIECSAMS +LG+ DIHGG Sbjct: 173 GNFPEDKRKHDPLDFVLWQAQAPGEPAWPSPWGPGRPGWHIECSAMSIRHLGQQIDIHGG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHH EIAQS + + W+H G + +G KMSKS GN I+ LL+T Sbjct: 233 GADLAFPHHTCEIAQSEHYTGKKPFSQFWMHTGMVYQDGEKMSKSLGNLTLISNLLKT-- 290 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG--------IID 348 + VIR+ + HYR+P + T + L++A+ + + Q G + Sbjct: 291 -----YSPDVIRVTLQSHHYRQPWECTPEDLSKAQETIELFKQVRRLVGEESHGEDAQVR 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL 392 A+ NDL+ +A+ L + A+ N DL NA A ++ Sbjct: 346 ALFQQAMENDLDAPTAVSGLREAAQTVIANRDL----NAGAEVI 385 >gi|269926313|ref|YP_003322936.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789973|gb|ACZ42114.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 392 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 200/389 (51%), Gaps = 29/389 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+TL +I D + +YVCG T YD H+G+A + FDVL R L + Sbjct: 1 MKLYDTLTNQIKPLAGED-GRVSVYVCGITPYDTTHLGHAFLYVTFDVLIRYLESTGYQ- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y +N+TDIDD I+ +A++ +N + + T +F+ D L P H P Sbjct: 59 -VIYTQNVTDIDDDILRKAKE------LNMFYLDLAERETNRFLSDLRALNVRMPDHYPH 111 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT I M+ ++ +I GHAY + + FD + +G S+ +E R P Sbjct: 112 ATQEIDGMVEIVSKLIDKGHAYVRDGNVYFDIDTYEGFGQLSKLSREEMIAIARERGGNP 171 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E + +P DF+LW+RS EP W+SPW +GRPGWHIECS MS YLG IHGGG DL Sbjct: 172 EDPLRDDPLDFLLWQRSAEGEPAWDSPWSKGRPGWHIECSTMSLKYLGASLTIHGGGADL 231 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHE E AQS C I W+H G L +G KMSKS GN + ++ LL+ Sbjct: 232 IFPHHECERAQSECYTGISPFVKHWMHVGMLRYQGEKMSKSLGNLVLVDRLLQ------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS------- 353 ++ +RL ++ HY+E ++ + EAE L K ++ D Sbjct: 285 NYSPDAVRLVLISHHYQESWEYQDSMIEEAEKLAQKIRIAASLAPAHDAEFQDTYEFDLF 344 Query: 354 --ALYNDLNTVSAIQALHKLARESTKNHD 380 A+ ++LNT A++ L L+ E +N D Sbjct: 345 RQAMEDNLNTPRAVELLRSLSEEIIQNDD 373 >gi|313204739|ref|YP_004043396.1| cysteinyL-tRNA synthetase [Paludibacter propionicigenes WB4] gi|312444055|gb|ADQ80411.1| cysteinyl-tRNA synthetase [Paludibacter propionicigenes WB4] Length = 488 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 174/502 (34%), Positives = 246/502 (49%), Gaps = 75/502 (14%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + IYNTL RK +F + + MYVCGPTVY H+GN R I FD++YR L Y Sbjct: 1 MEHNLYIYNTLSRKKEQFIPLHEDRVGMYVCGPTVYSDVHLGNCRTFISFDLIYRYL-LY 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD DDK ++A+ E P+ I K T F Sbjct: 60 LGYK-VRYVRNITDAGHLEGDRDEGDDKFAKKAKLEQLE-PME-----IVQKYTVGFHDV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS----SIPNYGSFS 166 L P+ +P AT HI + I +++ I+ G+AYE + FD +P YG + Sbjct: 113 LNVFNTLPPSIEPTATGHISEQIEMVKAILESGYAYEIEGTVYFDVEKYNKDLP-YGILT 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTP---MEPGWESPWGRGRPGWHIECSAM 222 RK+++ GTR + + KK DF LW ++ P M+ W SPWG G PGWHIECSAM Sbjct: 172 NRKLEDLLEGTRELGGQDEKKGRLDFALWIKAKPETLMQ--WPSPWGWGFPGWHIECSAM 229 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 S+ YLG FDIHGGG+DL HH NEIAQS + + W+H L + G +MSKS Sbjct: 230 STKYLGATFDIHGGGMDLQATHHTNEIAQSQACNHV-APVKYWMHTNMLTVNGVRMSKSA 288 Query: 283 GN-------FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQ 325 GN F + LLE R + +R M +HYR +DF+ + Sbjct: 289 GNGFLPKELFTGAHPLLE------RGYSPMTVRFFMAQSHYRSTLDFSNEALQASEKGFE 342 Query: 326 RLTEAEILLSKWPQTSTSKGIIDPAVLS----ALYNDLNT----------VSAIQALHKL 371 RL + L K Q ST+ + ++ S A+ +D NT + AI +H Sbjct: 343 RLMDGYARLQKL-QASTASSVYTSSLRSKCEEAMNDDFNTPIAIAHLFDALKAINLIHD- 400 Query: 372 ARESTKNHDL------LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKF 425 +E+ DL +F L EV ++ A++ L+ RL + K + Sbjct: 401 GKETISAKDLEELKSVFKVFIEDVLGLKSEVATSGGSEAYKGAVDLLLNMRLAAKQNKDW 460 Query: 426 SSADYIRKQLESKGFILEDYKN 447 +++D IR +L + GF ++D K+ Sbjct: 461 ATSDKIRNELTALGFEIKDTKD 482 >gi|91216061|ref|ZP_01253030.1| cysteinyl-tRNA synthetase [Psychroflexus torquis ATCC 700755] gi|91186038|gb|EAS72412.1| cysteinyl-tRNA synthetase [Psychroflexus torquis ATCC 700755] Length = 497 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 172/494 (34%), Positives = 253/494 (51%), Gaps = 62/494 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYN++ + +FQ I + MYVCGPTVY H+GN R I FD+++R L++ G Sbjct: 7 QSLKIYNSITGEKEDFQPITKGYVGMYVCGPTVYSNVHLGNCRTFISFDLVFRYLKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K + YVRNITD +D+I ++A+ P+ + K + F + Sbjct: 66 YK-IRYVRNITDAGHLENDGEEGEDRIAKKAKVMELE-PME-----VVQKYSIDFHQILE 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 + L P+ +P AT HI + I I+ II G AY+ N + FD + +YG S RK Sbjct: 119 KFNNLPPSIEPTATGHIIEQIETIKTIIDKGLAYQVNGNVYFDVLKYNEKHHYGKLSGRK 178 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 I++ TR + + KKNP DF LWK++ P W SPWG G PGWH+EC+ MSS YL Sbjct: 179 IEDLISNTRELAGQSDKKNPQDFALWKKAEPQHIMRWPSPWGIGFPGWHLECTVMSSKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGG+DL FPHHE EIAQ A + N W+H L L G+KMSKS GN I Sbjct: 239 GDEFDIHGGGMDLKFPHHECEIAQGQAATG-KDPVNYWMHANMLTLNGKKMSKSTGNNIL 297 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 EL + +S+ APVIR ML +YR +DF+ + L+ +E K ++ ++ + Sbjct: 298 PRELFTGDNETLSKSYTAPVIRFFMLQANYRSILDFSDEALSASEKGFQKLMESLSTLKV 357 Query: 347 IDPAVLS-------------ALYNDLNT-------VSAIQALH-------KLARESTKNH 379 + + S A+ +D N+ A++ ++ +L+RES Sbjct: 358 LKASKTSDFNVNTWKDKCYEAMNDDFNSPILIAHLFEAVKQINLAKSGDKRLSRESL--- 414 Query: 380 DLLP--IFNASAHILGIE----VCKEHLN-KNISIAIEKLVQERLILLKMKKFSSADYIR 432 DLL + + ++G+E K N + IE ++Q R K F ++D IR Sbjct: 415 DLLSKTMNDFIFEVMGLEDLEDTSKSEANTDDFKELIEFMIQMRNHARLNKDFETSDKIR 474 Query: 433 KQLESKGFILEDYK 446 +L L+D K Sbjct: 475 DKLLKMDVELKDQK 488 >gi|317056857|ref|YP_004105324.1| cysteinyl-tRNA synthetase [Ruminococcus albus 7] gi|315449126|gb|ADU22690.1| cysteinyl-tRNA synthetase [Ruminococcus albus 7] Length = 471 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 233/472 (49%), Gaps = 51/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF + + MY CGPTVY +AHIGN R I+ DVL + +R+ + Sbjct: 1 MKIYNTLSHKVEEFVPNEAGKVSMYTCGPTVYHYAHIGNLRSYIMEDVLEKYMRWTGLD- 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V V NITD+ DDK+++ A++EH ++ I T F D +L Sbjct: 60 -VKRVMNITDVGHLTSDGDTGDDKMLKGAKREHKTVME------IAKFYTDAFFADCAKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT +I + I +I ++I G+AYEA I FDTS + Y F ++ + Sbjct: 113 NIKTPDVVAPATTYIDEFIKVISSLIEKGYAYEAGGNIYFDTSKLDEYYVFHNFSAEDLE 172 Query: 175 MGTR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 +G R V E +K+N ADF+LW + E WESPWG G PGWHIECS +S LG Sbjct: 173 VGVREGVEEDTNKRNKADFVLWFTKSKFDDQELKWESPWGVGYPGWHIECSCISMKNLGD 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D IFPHH NEIAQS A K N W H LN + KMSKS G F+T++ Sbjct: 233 KLDIHCGGVDNIFPHHTNEIAQS-EAYIGHKWCNYWFHVHHLNTDTGKMSKSKGEFLTVS 291 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------- 339 LLE K + V R L +HYR+ + F+ + L A+ K Sbjct: 292 -LLEEK-----GYDPLVYRFFCLQSHYRKSLVFSWENLDNAKTAYDKLTARIAALLNEKD 345 Query: 340 ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL--G 393 + K + A +A+ DLNT + + ++ + + L +L G Sbjct: 346 AAPADAAKKDELKAAFAAAMDEDLNTSNGMTVIYDILKSDASAATKLAAIEDIDKVLCVG 405 Query: 394 IEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 + LN+ S A + LV+ER K K F+ AD +R ++ + G+ Sbjct: 406 LIAAANKLNEKNSSADIPAEVMALVEERQAARKAKDFAKADELRDKITALGY 457 >gi|283957215|ref|ZP_06374677.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336] gi|283791287|gb|EFC30094.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336] Length = 462 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 233/461 (50%), Gaps = 55/461 (11%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTLEE------ITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E +ES +G+GRPGWH EC AM DIH GG+DL+FPHHENE AQ C + K Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHENEAAQCRCGCK-RK 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 ANIW+HNGF+ ++G KMSKS N I + L K+F G + +R + +HYR Sbjct: 240 LANIWLHNGFVKIDGEKMSKSLNNSFFIKDAL--KEFMGEA-----LRFYLSSSHYRSHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTS-----------------KGIIDPAVLSALYNDLNTVS 363 ++++ L A+ L K+ + K I +L L +DLN Sbjct: 293 NYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNISK 352 Query: 364 AIQALH--------KLARESTK---NHDLLPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L +L +E+ ++ + A I G L +K Sbjct: 353 ALALLDDFISSANLELDKENKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEER 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IEKL+ ER K K F++AD IR+QL SK L D N Sbjct: 413 EEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLDTPN 453 >gi|325106147|ref|YP_004275801.1| cysteinyl-tRNA synthetase [Pedobacter saltans DSM 12145] gi|324974995|gb|ADY53979.1| cysteinyl-tRNA synthetase [Pedobacter saltans DSM 12145] Length = 486 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 248/493 (50%), Gaps = 62/493 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IYNT+ RK EF+AI+P + MYVCGPTVY H+GN R I FD++YR L + Sbjct: 1 MYDSLFIYNTISRKKEEFKAINPPYVGMYVCGPTVYSDVHLGNCRTFISFDLIYRYLMHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +DKI ++A+ + + + I+ + T F Sbjct: 61 -GYK-VRYVRNITDAGHLEGDGDSGEDKISKKAK-----LASLEPMEIVQTY-TNGFHDM 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSR 167 L P+ +P AT HI + I +++ I+ G AYE + + FD NYG + Sbjct: 113 MKVFNVLPPSIEPTATGHIIEQIEMVKTILAKGLAYEVDGSVYFDVEKYNQHHNYGVLNG 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 RK+++ TR + + K DF LW ++ P W SPWG G PGWH+ECSAMSS Sbjct: 173 RKLEDLLNNTRELGGQDQKHGKLDFALWIKAKPEHLMQWPSPWGMGFPGWHLECSAMSSK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL HH NEIAQ+ A + AN WIH L + G+KMSKS GN Sbjct: 233 YLGEQFDIHGGGMDLAPTHHTNEIAQNVAACG-KHPANYWIHTNMLTVNGQKMSKSLGNS 291 Query: 286 ITINELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILL 334 +EL + + + + V++ ML HYR +DF+ +RL A LL Sbjct: 292 FLPHELFTGQHELLNKGYSPMVVKFFMLQAHYRSTLDFSNEALDASEKGFKRLMNALGLL 351 Query: 335 SKWPQTSTSK---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------- 380 K + TS+ I+ SA+ +D N+ I L + + +D Sbjct: 352 DKLKVSETSEVDLKAIEQRFESAMNDDFNSPILIAELFDVVKTINSIYDGKTSISEADLI 411 Query: 381 -LLPIFNASAH-ILGIEVCKEHLNK-----NISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + N H ILG++ N+ N I I K +E+ K ++++D IR Sbjct: 412 GLTSLLNEYVHNILGLKDELSEGNEIEPLMNFLINIRKEAKEK------KDYATSDKIRI 465 Query: 434 QLESKGFILEDYK 446 L+ G+ L+D K Sbjct: 466 GLQEIGYQLKDSK 478 >gi|228898843|ref|ZP_04063125.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] gi|228963190|ref|ZP_04124359.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796448|gb|EEM43887.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228860743|gb|EEN05121.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] Length = 420 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 231/444 (52%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 338 PQTSTS------KGIID-----PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST K +++ A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLVEIEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSK 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ + + + IE+L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELTQ---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KGRNIILED------TAQGTRWKR 419 >gi|153831904|ref|ZP_01984571.1| cysteinyl-tRNA synthetase [Vibrio harveyi HY01] gi|148871902|gb|EDL70725.1| cysteinyl-tRNA synthetase [Vibrio harveyi HY01] Length = 457 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 161/460 (35%), Positives = 234/460 (50%), Gaps = 37/460 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K++++NTL R + F I+ + +Y CGPTVYD+AH GN R + DVL R L Sbjct: 5 KLQLFNTLGRALEPFNTIESGKVGLYACGPTVYDYAHAGNLRTYLFVDVLRRTLEL--NG 62 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V +V NITD+ +DK+ + AR++ N + I F+ D R Sbjct: 63 YDVNHVMNITDVGHLVSDADTGEDKMEKGARKQ------NKSAWEIAKYFEDVFLDDLNR 116 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L + P+ RA HI + I +Q + G Y+ ++ + FD++ +P+YG ++ + Sbjct: 117 LNIIKPSIICRAAEHIQEQIEFVQELEQKGFTYQTSDGVYFDSAKLPDYGKLAKLDREGL 176 Query: 174 KMGTRVPEKYHKKNPADFILWKRS--TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G RV E KK+P DF LWK S TP + WESPWG G PGWHIECSAM+ YLG+VF Sbjct: 177 EAGIRV-EMAEKKSPTDFALWKFSGDTPRQMEWESPWGVGFPGWHIECSAMAEKYLGEVF 235 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG D I HH NEIAQ C A AN W+H FL L K+SKS G + ++ L Sbjct: 236 DIHVGGEDHIPVHHTNEIAQ-CQAKNGHVQANYWLHGFFLQLNKEKISKS-GTSLRLDAL 293 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------SKWPQTSTSK 344 +E + + R +L +HYR + FT + L A+ L S P+ Sbjct: 294 IE------KGYDPLAYRYLVLTSHYRSHLSFTWESLDAAQTALKRLKAKVSALPEGGKVD 347 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404 +S + NDL AI + +L + + D+ + G+E+ K + Sbjct: 348 QTFVERFMSLINNDLAIPQAIALMWELLGSALNDADIKATARYFDSVFGLELDKVE-EEE 406 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I I +LV+ RL + K KK+ AD IR+Q+ G+ + D Sbjct: 407 IPREILELVELRLQMKKQKKYQQADEIRQQVAEFGYRIND 446 >gi|229176690|ref|ZP_04304094.1| Cysteinyl-tRNA synthetase [Bacillus cereus 172560W] gi|228606733|gb|EEK64150.1| Cysteinyl-tRNA synthetase [Bacillus cereus 172560W] Length = 420 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 155/444 (34%), Positives = 229/444 (51%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIKFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKW 337 +++++ + + +IR ML HYR PI+F+ ++R+ A L Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 338 PQTSTSKGIIDPAVLS-----------ALYNDLNTVSAIQALHKLARESTK----NHDLL 382 ++ST + LS A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLSEIEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSK 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ K + + IE+L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELSK---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KERNIILED------TAQGTRWKR 419 >gi|325529638|gb|EGD06509.1| cysteinyl-tRNA synthetase [Burkholderia sp. TJI49] Length = 466 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 166/471 (35%), Positives = 235/471 (49%), Gaps = 39/471 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +++Y+T R + F I P + MY CGPTVYD AHIGN R + D+L R L+R Y Sbjct: 3 LELYDTWSRAVRPFTPIRPGRVGMYCCGPTVYDDAHIGNLRTYVFEDILRRVLMRNGY-- 60 Query: 64 KCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 V +V NITD+ D + E S ++ I + T FV+D L L P Sbjct: 61 -AVRHVVNITDVGHLTSDADEGEDKMEKGSRRTGESAWAIAQRYTDAFVQDWRALNLLEP 119 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 T RAT+HI + I I+ + G+ Y ++ + FDT +YG +R + G RV Sbjct: 120 TIWCRATDHIAEQIAFIETLERAGYVYRTDDGLYFDTRRQDDYGHLARLDRAGLQAGKRV 179 Query: 180 PEKYHKKNPADFILWKRS---TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K++ DF LWK S + W+SPWGRG PGWHIECSAMS+ YLG +FDIH G Sbjct: 180 AMG-GKQSVTDFALWKFSRAGVKRQMEWDSPWGRGFPGWHIECSAMSAKYLGTLFDIHCG 238 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGNFITINELLETK 295 G D I HH NEIAQ+ A + AN W+H FL L+ KMSKS+G+F+ + L E Sbjct: 239 GEDHIAVHHSNEIAQTQAAHGT-RLANYWLHGHFLTLDADAKMSKSSGDFVRLQTLQE-- 295 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIID 348 R+ R L HYR + FT L A+ L++ WP G D Sbjct: 296 ----RNIDPLAYRYLCLTAHYRSKLHFTWASLDAAQTALNRLRQLYVAWP----DGGRAD 347 Query: 349 PAVL----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-EHLNK 403 PA + + L +DLN A+ L +L R L ++ +LG+ + ++ Sbjct: 348 PAFVARFDAELNDDLNLPRALAVLWELVRSDLPPSTLKATVDSFDTVLGLGLRDWTAVSF 407 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 +I + L+ R + ++SAD IR L ++G+ +ED GQR+ Sbjct: 408 DIPEDVRVLLDARERARAERDWASADRIRDSLRAQGWRVEDTT---EGQRL 455 >gi|225467252|ref|XP_002268960.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 408 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 200/391 (51%), Gaps = 66/391 (16%) Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID 171 T L CL+PTHQPR ++H+ Q+ +I II + AY + ++ F PNYG S RK++ Sbjct: 2 TDLHCLSPTHQPRVSDHMDQIKDMITQIINNDCAYTIDGDVYFAVDKSPNYGRLSGRKLE 61 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G RV K+NPADF LWK + P EP W+SPWG GRPGWHIECSAMS+HYL F Sbjct: 62 NNRAGERVAVDSRKRNPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSAHYLTFKF 121 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHENEIAQSC A + E + W+HNG + KMSKS GNF TI ++ Sbjct: 122 DIHGGGIDLIFPHHENEIAQSCAACQ-ESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKW 337 + + +R +L THYR P+++++ Q L + E LS + Sbjct: 181 TDL-------YHPLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSLF 233 Query: 338 PQTSTSKGIIDPAV-----------LSALYNDLNT------------------------- 361 + + I PA + + +DL+T Sbjct: 234 QEVNGRNVCIAPAAQDCIRTLQTDFQTKMSDDLSTPHILNASLQEALRFINSCLNMLKKQ 293 Query: 362 -----VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN---ISIAIEKLV 413 +SA+++L KL +E +L + + A+ ++ K K I + L+ Sbjct: 294 QKQQQLSAVESLTKLGKEVKGVLSVLGLLSTLAYSEVLQQLKGKALKRAGMIEDDVLHLI 353 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILED 444 +ER + K K FS D IR L SKG L D Sbjct: 354 EERALARKNKDFSKGDQIRADLASKGIALMD 384 >gi|228919040|ref|ZP_04082419.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956531|ref|ZP_04118327.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229040995|ref|ZP_04189758.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH676] gi|229107776|ref|ZP_04237412.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|229125607|ref|ZP_04254639.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|229142896|ref|ZP_04271337.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST24] gi|229148499|ref|ZP_04276755.1| Cysteinyl-tRNA synthetase [Bacillus cereus m1550] gi|296500924|ref|YP_003662624.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis BMB171] gi|228634915|gb|EEK91488.1| Cysteinyl-tRNA synthetase [Bacillus cereus m1550] gi|228640517|gb|EEK96906.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST24] gi|228657799|gb|EEL13605.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|228675625|gb|EEL30833.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|228727292|gb|EEL78486.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH676] gi|228803096|gb|EEM49918.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840565|gb|EEM85827.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321976|gb|ADH04904.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis BMB171] Length = 420 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 153/444 (34%), Positives = 226/444 (50%), Gaps = 57/444 (12%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 +VFD + R L Y + V YV N TD+DDK+I+ A + +P I + + + Sbjct: 1 MVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANELGEDVPT------IADRFVEAY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 +D T L C T PR T ++ +I IQ ++ G+AYE+ ++ F T YG S Sbjct: 53 FEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSH 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + I + + G R+ K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YL Sbjct: 113 QPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYL 172 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHHENEIAQS + A W+HNG++N+ KMSKS GNFI Sbjct: 173 GDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFIL 231 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------Q 339 +++++ + + +IR ML HYR PI+F+ + L L + + Sbjct: 232 VHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHR 284 Query: 340 TSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLL 382 +S + D A A+ +D NT +AI L+ +A + + H Sbjct: 285 MESSTDLTDHNEKWLAEIEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSK 344 Query: 383 PIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + A ILG+E+ K + + IE+L+Q+R+ K + F+ +D IR L Sbjct: 345 VVIEAYVKQLETLFDILGLELSK---EELLDEEIEELIQKRIEARKNRDFALSDQIRDDL 401 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + + ILED + TRWK+ Sbjct: 402 KERNIILED------TAQGTRWKR 419 >gi|307719502|ref|YP_003875034.1| hypothetical protein STHERM_c18260 [Spirochaeta thermophila DSM 6192] gi|306533227|gb|ADN02761.1| hypothetical protein STHERM_c18260 [Spirochaeta thermophila DSM 6192] Length = 702 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 172/489 (35%), Positives = 249/489 (50%), Gaps = 54/489 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++NT+ R F + + MY CGPTVY++AHIGN R I DVL R L + G Sbjct: 234 ELRLFNTMGRIQEPFVPREAGKVGMYTCGPTVYNYAHIGNLRTYIFEDVLRRTL-LHAGY 292 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 + V +V N+TD+ +DK+I+ AR+ ++ I T+ F +DT + Sbjct: 293 RLV-HVMNVTDVGHLTSDGDEGEDKVIKAARER------GMSVWEIAEFFTRAFFEDTDK 345 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L P +AT HIP+MI L++ + GH Y A + +D S+ P YG +R +DEQ Sbjct: 346 LNIQRPEIVCKATEHIPEMIDLVKRLEERGHTYLAGGNVYYDISTFPRYGELAR--LDEQ 403 Query: 174 KM--GTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLG 228 + G RV HK++P DF+LW + E W+SPWGRG PGWH+ECSAMS YLG Sbjct: 404 DLRAGARVGVDAHKRSPRDFVLWFTRSKFEHQAMVWDSPWGRGYPGWHLECSAMSMKYLG 463 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIH GG+D I HH NEIAQS A W+H FL ++ KMSKS GNF+T+ Sbjct: 464 EQFDIHCGGVDHIPVHHTNEIAQSEGATGKHPWVRYWLHAEFLVMDSGKMSKSKGNFLTL 523 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------EILLS----- 335 + LE + F + R L HYR + F+ + L A E L Sbjct: 524 SG-LEEEGFHPLDY-----RYFCLGAHYRSQLFFSWEALEAARNARRNLIEHLSGLHPRD 577 Query: 336 KWPQTSTSK--GIIDPAVLSALYNDLNTVSAIQALHK-LARESTKNHDLLPIFNASAHIL 392 W QT S+ A+ +DL T A+ L + L E+ + + IL Sbjct: 578 GWEQTRLSERGEAYMREFEEAIGDDLATPRALAVLWRALKDEALPPEERAVLAVTMDRIL 637 Query: 393 GIEVCKEHLNKN-ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 G+ + + + + + + +LV+ R L K + F+ AD IR +L +G I+ED P Sbjct: 638 GLSLAEAIASDDALEPELLELVRRREALRKQRNFAEADRIRDELARRGIIVED--TPQG- 694 Query: 452 QRMTRWKQK 460 RWK+K Sbjct: 695 ---PRWKRK 700 >gi|19173375|ref|NP_597178.1| CYSTEINYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1] gi|74697526|sp|Q8SRE0|SYC_ENCCU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|19170964|emb|CAD26354.1| CYSTEINYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1] Length = 480 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 177/294 (60%), Gaps = 8/294 (2%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K +K+YN++ R I F + ++MY+CGPTVYD +HIG+AR ++FDV+ R+L Y Sbjct: 1 MDKTLKLYNSITRTIDIFTPRKGNEVKMYICGPTVYDSSHIGHARTYVMFDVIRRVLSDY 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V +V NITDIDDKII RA + S+ +T K T++F +D L +P+ Sbjct: 61 L-KYNVRFVMNITDIDDKIIARANETGASM------EEVTRKYTEEFFEDMKTLNVRSPS 113 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 T+++ +++ I+ + +G AYE+ + FD +S S+ K + + + Sbjct: 114 FVTFVTSYVDKIVKFIEKLEANGLAYESRGSVYFDLNSYQQRYSYPLFK-SKDGINSEGD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF+LWKRS EP +ES WG GRPGWHIECS MSS LG+ DIH GG+DL Sbjct: 173 ENKDKRSPCDFVLWKRSKENEPRYESKWGHGRPGWHIECSVMSSDILGEDLDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHHENEIAQ E ++H G LN+ G KMSKS NF TI E L+T Sbjct: 233 AFPHHENEIAQCQAYFMQEPWVKCFLHTGHLNISGLKMSKSLKNFTTIKEALKT 286 >gi|284040387|ref|YP_003390317.1| cysteinyl-tRNA synthetase [Spirosoma linguale DSM 74] gi|283819680|gb|ADB41518.1| cysteinyl-tRNA synthetase [Spirosoma linguale DSM 74] Length = 499 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 167/501 (33%), Positives = 248/501 (49%), Gaps = 71/501 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F A++ + MYVCGPTVY++ H+GN R + FD LYR L + G K Sbjct: 4 LQLYNTLSRKKEPFVALNAPYVGMYVCGPTVYNYVHLGNVRTFLTFDTLYRYLTFI-GYK 62 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRN+TD+ +DKI A+ E P+ I + T F + Sbjct: 63 -VRYVRNLTDVGHLVGDGDDGEDKIGRMAKLEKVE-PME-----IVQRFTNDFHTVMAQF 115 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI----PNYGSFSRRKI 170 P+ +P AT H+ + I +Q ++ +G AYE+N + FD + NYG S R + Sbjct: 116 NTFPPSIEPTATGHMVEQIEAVQTLLANGLAYESNGSVYFDIDTYNKRGGNYGKLSGRIL 175 Query: 171 DEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 D+ TR + + K++P DF +WKR+ P W SPWG G PGWH+EC+ MS+ YLG Sbjct: 176 DDLLNETRELDGQSEKRSPLDFAIWKRAAPEHLMRWNSPWGEGFPGWHLECTCMSTKYLG 235 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 K FDIHGGG+DL FPHHE EIAQ ++ W+H+ L + G+KMSKS GN Sbjct: 236 KQFDIHGGGMDLKFPHHECEIAQGDGLTGVDPV-RYWMHSNMLTVNGQKMSKSLGNSFLP 294 Query: 289 NELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE------------ILLS 335 EL + + + +R ML +HYR +DF+ L A+ I Sbjct: 295 AELFAGSHPLLDQPYSPMTVRFFMLQSHYRSTLDFSNDALKAAQKGYRRLANGLRVIKTL 354 Query: 336 KWPQTSTSK-GI-IDPA-----------VLSALYNDLNTVSAIQALHKLARESTKNHDLL 382 +P + ++ G+ +D A A+ +DLNT AI L L K ++L Sbjct: 355 SYPSDAEAENGVAVDEAKQKEIQKAVQQFYDAMNDDLNTAVAIAQLFTL----LKYVNML 410 Query: 383 PIFNASAHILGIE---VCKEHLNKNISIAIEKL--------VQERLILL-----KMKKFS 426 + A +LG E + KE + + L V E L+ L + +++ Sbjct: 411 YLNQLQAAVLGEETFNLLKESFVTFMQDVLGLLEEGATNQPVLEGLLTLYKEYKEQRQYD 470 Query: 427 SADYIRKQLESKGFILEDYKN 447 D IR +++G ++D K+ Sbjct: 471 KVDQIRSYFKAQGLAIKDMKH 491 >gi|317504596|ref|ZP_07962566.1| cysteine--tRNA ligase [Prevotella salivae DSM 15606] gi|315664290|gb|EFV03987.1| cysteine--tRNA ligase [Prevotella salivae DSM 15606] Length = 496 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 177/500 (35%), Positives = 247/500 (49%), Gaps = 65/500 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++ + IYNTL R F+ N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQNLIIYNTLTRHKELFKPQHAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLQHI 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 -GYK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQHYTNRYHAA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P AT HI + L++ I+ +G+AYE+N I FD N YG S Sbjct: 113 MEALNVLPPSIEPHATGHIIEQEELVKEILNNGYAYESNGSIYFDVVKYNNDHRYGILSG 172 Query: 168 RKIDEQKMGTR----VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAM 222 R + + +R V EK H+ DF LWK++ P W SPW G PGWH EC+AM Sbjct: 173 RNLTDLINNSRELQGVSEKKHQ---VDFALWKKAQPEHIMRWPSPWSVGFPGWHCECTAM 229 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 YLG FDIHGGG+DLIFPHHE EIAQ+ A + ++ + W+HN + + G+KM KS Sbjct: 230 GRKYLGSHFDIHGGGMDLIFPHHECEIAQA-VASQGDQMVHYWMHNNMITINGQKMGKSL 288 Query: 283 GNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAE 331 GNFIT+ + +P+ IR +L HYR +DF+ +RL A Sbjct: 289 GNFITLEQFFTGNHASLTQAYSPMTIRFFILSAHYRGTVDFSNEALEAAQKGYERLMNAF 348 Query: 332 ILLSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQAL------------HKLA 372 L + P + V A+ +DL T I L HK Sbjct: 349 DDLERVPVSDHCDAETQQFVKNFRQRCYDAMNDDLQTPLVISYLFEACHLINTLLDHKTT 408 Query: 373 RESTKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLKM----KKFSS 427 +S H+L A ++LG++ K N+ A K+V L L K +++ Sbjct: 409 IDSDSLHELSEAMKLFAFNLLGLKNEKGDNNEAREEAYGKVVDMVLDLRAKAKADKDWAT 468 Query: 428 ADYIRKQLESKGFILEDYKN 447 +D IR L GF ++D K+ Sbjct: 469 SDKIRDALSEAGFEVKDTKD 488 >gi|149280305|ref|ZP_01886427.1| cysteinyl-tRNA synthetase [Pedobacter sp. BAL39] gi|149228994|gb|EDM34391.1| cysteinyl-tRNA synthetase [Pedobacter sp. BAL39] Length = 486 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 245/488 (50%), Gaps = 52/488 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL RK F+ ++ N+ +YVCGPTVY H+GN R I FD+++R L+Y Sbjct: 1 MNTGLQLYNTLTRKKEVFEPLNAPNVGLYVCGPTVYSDVHLGNCRTFISFDLIFRYLKYS 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD DDK +RA+ E P+ I K T F Sbjct: 61 -GYK-VRYVRNITDAGHLEGDRDEGDDKFAKRAKLEQLE-PME-----IVQKYTLGFHDV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSR 167 L P+ +P AT HI + I +I+ II +G+AYEA+ + FD S NY + Sbjct: 113 LRMFNTLPPSIEPTATGHIIEQIEMIKEIISNGYAYEADGTVYFDVEKYSKSYNYTILTN 172 Query: 168 RKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 R +++ TR + + K+ DF LW ++ P W SPWG G PGWHIECSAMS+ Sbjct: 173 RNLEDMLANTRELGGQDQKRGRLDFALWIKAKPETLMRWASPWGEGFPGWHIECSAMSAK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+ FDIHGGG+DL HH NEIAQS C+ + + A W+H L + G +MSKS GN Sbjct: 233 YLGEEFDIHGGGMDLAATHHTNEIAQSEACSHK--QPAKYWMHTNMLTVNGARMSKSAGN 290 Query: 285 FITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 +L + +P+ ++ ML HYR +DF+ +RL A L Sbjct: 291 GFLPEQLFKGDHVLLEKGFSPMTVKFFMLQAHYRSTLDFSNEALDASEKGFRRLMNAVSL 350 Query: 334 LSKWPQTSTSKGIIDPAV---LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA- 389 L K + S I P + A+ +D N+ I L + R +D +A++ Sbjct: 351 LDKLVPSEASDFDIRPIAENCVKAMNDDFNSPVVIAELFEAVRIINTVYDGKGRISAASL 410 Query: 390 ---------HILGIEVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + I K+ + N+ + ++ ++ R + K ++++D IR L+S Sbjct: 411 EELKKLMNDFVFEIFGLKDEDSSNVELNSVLDMVIDLRKTAKENKDYATSDKIRLGLQSM 470 Query: 439 GFILEDYK 446 G L+D K Sbjct: 471 GIQLKDSK 478 >gi|323453109|gb|EGB08981.1| hypothetical protein AURANDRAFT_37286 [Aureococcus anophagefferens] Length = 660 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 163/484 (33%), Positives = 230/484 (47%), Gaps = 70/484 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 K ++ IYN+L R F +DP I MYVCGPTVYD AH+G+AR + FDV+ R+LR Sbjct: 24 KPQLMIYNSLTRSKVPFVPMDPLGKVITMYVCGPTVYDAAHLGHARTYLQFDVMRRILRD 83 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 G V YV N+TD+DDKII R+ + S + + F++D T L P Sbjct: 84 ALGYD-VNYVMNVTDVDDKIIMRSAERGVSP------ETLAREWEHAFLEDMTSLGVERP 136 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSF------SRRK 169 T PR T ++P+++ ++ I+ +G AY + FDT + +YG S Sbjct: 137 TSMPRVTEYVPEIVAFVEKIVANGFAYADQGSVYFDTVAFGKAGYDYGKLVPESIGSAEL 196 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL-- 227 + E + + KK+P DF LWK S P EP W SPWG GRPGWHIECSAM + + Sbjct: 197 MAESEGKLGILLGGGKKDPRDFALWKASKPGEPTWPSPWGDGRPGWHIECSAMIDNTIGS 256 Query: 228 ------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 DIHGGG+DL FPHH+NE+AQ ++T N + H G L++ G KMSKS Sbjct: 257 GGVGGAAGCIDIHGGGVDLRFPHHDNELAQGEAFCACKQTVNYFAHTGHLHIRGLKMSKS 316 Query: 282 NGNFITINELLETKKFGGRSWPAPV----IRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 NFITI + L G PV +RL + Y P D++ L A ++ K+ Sbjct: 317 LKNFITIGQAL--AGLEGVEGSEPVHPRTMRLMFCLVSYNAPCDYSDNMLANARVVEKKF 374 Query: 338 -----------------PQTSTSKGIIDPAVLSAL-----------YNDLNTVSAIQALH 369 P + D +L+AL +D +T A+ AL Sbjct: 375 KEYFLNVAAALRPLDADPDSRQKLCAEDKELLAALKKAQDTVYARFLDDFDTPGAVLALQ 434 Query: 370 KLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 L ++ L F+A + C L A + V E L LL ++ + D Sbjct: 435 TLVDTTSA---YLQKFDAKQASRAVP-CSLAL-----CATARYVGETLDLLGLEGLCADD 485 Query: 430 YIRK 433 +R+ Sbjct: 486 VLRR 489 >gi|261337996|ref|ZP_05965880.1| cysteine--tRNA ligase [Bifidobacterium gallicum DSM 20093] gi|270277500|gb|EFA23354.1| cysteine--tRNA ligase [Bifidobacterium gallicum DSM 20093] Length = 550 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 167/521 (32%), Positives = 252/521 (48%), Gaps = 100/521 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGE 63 +K+Y+T +++F+ I P + +YVCG TV HIG+ R + FD++ R R Y Sbjct: 40 LKLYDTASHTVSQFEPIKPGQVGIYVCGATVQSSPHIGHIRAAVAFDIIRRWFERLGY-- 97 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKI+++ S ++F K L PT++P Sbjct: 98 -QVTFVRNVTDIDDKILDK------SAAAGQQWWQRAYLYEREFTKAYDELGVEPPTYEP 150 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE-------IIFDTSSIPNYGSFSRRK------- 169 RAT H+ M+ LIQ II +GHAY +E + FD +S P+YG + +K Sbjct: 151 RATGHMMDMVALIQRIIDNGHAYVVRDEQGNPTGNVYFDVASWPHYGELTHQKQSEPGAQ 210 Query: 170 -------IDE-----QKMGTRVP----EKYH----------KKNPADFILWKR---STPM 200 +DE MG V +KY+ K +P DF LWK + P+ Sbjct: 211 IDAVDVELDEAARVADAMGPSVDTAGNDKYNPVDPADMSPDKHDPRDFALWKAPKDTDPV 270 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 + W +P+G GRPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+C A Sbjct: 271 DARWHTPFGEGRPGWHIECSAMSHRYLDGMFDIHGGGLDLRFPHHENEMAQTCAAGY--D 328 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 +A W+H+ ++ +G KMSKS GN +++ +L PA V+R A+ YR + Sbjct: 329 SAARWMHSAWVTAKGEKMSKSLGNGLSVPVVLAEH-------PAWVVRYALGGVQYRSML 381 Query: 321 DFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAV-----------------LSALYNDLNTV 362 +++ Q L EA + S ++ ++ + +A+ D+N Sbjct: 382 EWSDQTLAEATAAYERVTNFISRAEDVLGEQIDRDQIVAVGADDLPIDFTNAMNEDINVS 441 Query: 363 SAIQALHKLAR----------ESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKL 412 A+ A+ R ++ + + L A LG++ E + S A ++ Sbjct: 442 GALAAIFTAIRNGNALMDANADAAQVRESLLQVRAMLDTLGLDPEAEPWAQETSNAANEV 501 Query: 413 VQERLILL---------KMKKFSSADYIRKQLESKGFILED 444 + +RLI K K F++AD IR L + G +ED Sbjct: 502 L-DRLIATQLEARAEARKAKDFATADAIRDALAAAGITIED 541 >gi|326335690|ref|ZP_08201876.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692119|gb|EGD34072.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 494 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 165/495 (33%), Positives = 246/495 (49%), Gaps = 58/495 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++KI+N+L + F + +++ MYVCGPTVY H+GN R + FD +YR L++ Sbjct: 1 MNHQLKIFNSLTGEKEVFVPLHANHVGMYVCGPTVYSNVHLGNVRTFMSFDFVYRALKFL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD +D+ ++++R E P+ I K T F K Sbjct: 61 -GYK-VRYVRNITDAGHLTDDGDVNNDRFVKQSRLEKLE-PME-----IVQKYTVDFHKV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFS 166 L PT +P AT HI + I L + ++ G AYE+N + FD NYG S Sbjct: 113 LEIFNLLPPTIEPTATGHILEQIQLTEKLLKDGFAYESNGSVYFDVLEYNRRGLNYGELS 172 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RR I+E TR + + K+NP DF LWK+++P W SPWG G PGWH+EC+ MS+ Sbjct: 173 RRNIEELFANTRDLDGQGEKRNPQDFALWKKASPAHIMRWASPWGDGFPGWHLECTVMST 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL FPHHE EIAQ A E W+H L + G++MSKS GN Sbjct: 233 KYLGNQFDIHGGGMDLKFPHHECEIAQG-KAGHGESPVRYWMHANMLTMNGQRMSKSTGN 291 Query: 285 FITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 +I +L+ F + + V+R + HYR +D + RL EA Sbjct: 292 YILPMQLVSGNNTFFEKPFAPAVVRFCFMQAHYRSVLDISNEAMLAAERGFARLMEAMKT 351 Query: 334 LSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQALHKLAR------------E 374 +++ TS + + + AL +D N+ I L + + Sbjct: 352 INELTPTSNTPTALTTMIENWKDKCYDALLDDFNSPMLIAHLFEAVKWIFQVKNDEEKIS 411 Query: 375 STKNHDLLPIFNASAH-ILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYI 431 + + +L + NA +LG++ ++ N N + ++ L+ R K ++ +D I Sbjct: 412 AAELKELQTLMNAFVFDVLGLQSEEQTNNYNDKLDGVLQLLINMREEARANKDWTLSDKI 471 Query: 432 RKQLESKGFILEDYK 446 R +L + G L+D K Sbjct: 472 RNELLTIGIQLKDGK 486 >gi|292609692|ref|XP_682732.4| PREDICTED: cysteinyl-tRNA synthetase, mitochondrial [Danio rerio] Length = 566 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 141/335 (42%), Positives = 191/335 (57%), Gaps = 23/335 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + YN+L +K Y CGPTVYD AH+G+A + FD+L R+L +G Sbjct: 54 VTAYNSLTKKKEPLILSQEKIATWYSCGPTVYDHAHLGHACSYVRFDILQRILSRLFGIN 113 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V ITDIDDKII+R+ +E+ S PI + + ++F KD L L P R Sbjct: 114 -VIHVMVITDIDDKIIQRSLEENIS-PIT-----LARMHEEEFKKDMLALRVLPPVVYMR 166 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 T +IPQ+I I+ II +GHAY + + F+T SI + YG + + G + Sbjct: 167 VTENIPQIIAFIERIIGNGHAYVTSQGNVYFNTKSISHRYGKLVNLGGNAGEQGVQ---- 222 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+N DF LWK S P EP WESPWG+GRPGWHIECS ++S G DIH GG+DL F Sbjct: 223 -DKENSRDFALWKASKPFEPYWESPWGQGRPGWHIECSTIASSVFGHQLDIHSGGIDLAF 281 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS + E+ N ++H+G L+L+G KMSKS N++TI + L Sbjct: 282 PHHENEIAQSEAYHQCEQWGNYFLHSGHLHLKGSVEKMSKSLKNYVTIKDFLA------- 334 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 S+ A RL L+T YR ID++ + EA+ LS Sbjct: 335 SYTANEFRLFCLLTKYRSAIDYSDASMNEAQSTLS 369 >gi|224031007|gb|ACN34579.1| unknown [Zea mays] Length = 400 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 154/400 (38%), Positives = 211/400 (52%), Gaps = 73/400 (18%) Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L CL P+ +PR ++H+ ++I +I+ I+ + AY ++ F + P YG S RK+D+ Sbjct: 4 LQCLPPSVEPRVSDHVDEIINMIKQILDNRCAYVVGGDVYFSVDNFPEYGELSGRKLDDN 63 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G RV K+NPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDI Sbjct: 64 RAGERVAVDERKRNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAHYLGHSFDI 123 Query: 234 HGGGLDLIFPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 HGGG DLIFPHHENEIAQS CC + T N WIHNGF+N+ +KMSKS GNF+TI + Sbjct: 124 HGGGEDLIFPHHENEIAQSRAACC----DSTINYWIHNGFVNVNSQKMSKSLGNFVTIRK 179 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 ++E + +R+ +L THYR PI++T+++L A L QT I Sbjct: 180 VIEM-------YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLRDCEEICQH 232 Query: 351 VLSALYNDL--NTVSAIQALHKLARESTKNHDL------------LPIFNASAH------ 390 S N L NT++ IQ LH E++ + DL L + N H Sbjct: 233 QQSNTGNPLPANTLNYIQKLHD-EFETSMSDDLHTSVALAAMSEPLKVMNDLLHTRKGKK 291 Query: 391 --------------------ILGI------EVCKEHLNKNI---SIAIEKLVQ---ERLI 418 +LG+ E ++ +K + SI E +VQ ER Sbjct: 292 QDKRLESLSALEEKIRVVLSVLGLLPSSYHEALQQLRDKALRRASITEELVVQKIEERTA 351 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K K++ +D IRK+L + G L D PD T W+ Sbjct: 352 ARKAKQYEKSDEIRKELAAVGIALMD--GPDG----TTWR 385 >gi|168700079|ref|ZP_02732356.1| cysteinyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246] Length = 519 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 27/328 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL RK F + MYVCGPTVY +HIG+ ++FD + R L Y G K Sbjct: 3 LQVYSTLTRKKEPFHKQPGDTVTMYVCGPTVYKPSHIGHMVGPVIFDTVKRYLTYL-GYK 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK--DTTRLACLAPTHQ 122 V +V NITD+DDK+I RA+++ ++P + +K T+ + +A +P Sbjct: 62 -VKWVVNITDVDDKLIGRAQEQKTTVPE------LAAKMTEDYFACLKALNIAVSSPDGI 114 Query: 123 ---PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 PRAT HI MI +IQ++I HAYE ++ + FD S +YG + R ++ + G R+ Sbjct: 115 DVFPRATQHIGGMIQVIQDLIKKDHAYEVDDGVYFDVSKDADYGKLTNRDPEQMEAGARL 174 Query: 180 PEKYHKKNPADFILWKRSTPMEPG---WESPW--GRGRPGWHIECSAMSSHYLGKVFDIH 234 K+NP DF LWK S P EP ++SP+ GRGRPGWHIEC+ M+ LG+ DIH Sbjct: 175 EPNPKKRNPGDFALWK-SKPGEPAEVQFDSPFKCGRGRPGWHIECTCMAIKELGETLDIH 233 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGGLDL FPHHENE+AQS + A +W+HNG L L+ KM+ S GN + + + L Sbjct: 234 GGGLDLQFPHHENELAQSESWTG-KPFARVWMHNGLLKLKSGKMAGSLGNVLNVADAL-- 290 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDF 322 K GG + +R +L THYR PID Sbjct: 291 KAVGGGA-----LRFFVLNTHYRSPIDL 313 >gi|154498448|ref|ZP_02036826.1| hypothetical protein BACCAP_02437 [Bacteroides capillosus ATCC 29799] gi|150272516|gb|EDM99701.1| hypothetical protein BACCAP_02437 [Bacteroides capillosus ATCC 29799] Length = 469 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 238/484 (49%), Gaps = 49/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L EF P + MY CGPTVY FAHIGN R I+ DVL + LRY Sbjct: 1 MKLYNSLSHTKEEFVPHVPGKVSMYTCGPTVYHFAHIGNLRSYIMEDVLEKFLRY--DGY 58 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT V NITD+ +DK+++ A++EH ++ I T F D +L Sbjct: 59 DVTRVMNITDVGHLASDADTGEDKMVKGAQREHKTV------MEIAKFYTDAFFSDCKKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT I I +I +++ G+AY A I FDTS + Y F+ ++ Sbjct: 113 NIKYPDVVQPATGMIDDYIKVITSLLEKGYAYHAGGNIYFDTSKLKQYYVFNDHDEEDLA 172 Query: 175 MGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGK 229 +G R V E +K+N ADF+LW + E W+SPWG G PGWHIECS +S YLG+ Sbjct: 173 VGVRDSVEEDQNKRNKADFVLWFTKSKFEDQALKWDSPWGVGYPGWHIECSCISMKYLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D FPHH NEIAQS A W+H LN KMSKS G F+T++ Sbjct: 233 YLDIHCGGIDNAFPHHTNEIAQS-EAYLGHPWCKYWMHVHHLNTSNGKMSKSKGEFLTVS 291 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---KGI 346 LLE K + V RL L +HYR+ + F+ + L A+ K + G Sbjct: 292 -LLEEKGY-----DPLVYRLFCLQSHYRKGLVFSWENLDNAKAAYDKLVARVAALGEDGD 345 Query: 347 IDP--------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC- 397 +D A + A+ NDLNT + A++ + T + + +LG+++ Sbjct: 346 VDQAAVDAARAAFIEAVGNDLNTSLGVTAVYDALKADTNDATKRAVIADFDKVLGLDLLG 405 Query: 398 -------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 KE + IE L+ +R K K ++ AD IR QL++ G ++D N Sbjct: 406 RAAALKEKESAPVEGAEEIEALIAQRAQAKKEKNWAQADAIRDQLKAMGVEIKDTPNGVE 465 Query: 451 GQRM 454 +R+ Sbjct: 466 WKRI 469 >gi|152992414|ref|YP_001358135.1| cysteinyl-tRNA synthetase [Sulfurovum sp. NBC37-1] gi|166225309|sp|A6Q8G9|SYC_SULNB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151424275|dbj|BAF71778.1| cysteinyl-tRNA synthetase [Sulfurovum sp. NBC37-1] Length = 465 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 239/472 (50%), Gaps = 49/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++++++ F+ I +YVCGPTVYD AH+G+AR + FD+L R L+ G K Sbjct: 1 MQIFDSVQKTKVTFEPIREGEASIYVCGPTVYDDAHLGHARSSLAFDLLSRTLK-ALGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +N TDIDDKII++ + S + ITS Q+++ + +L +P+ Sbjct: 60 -VIMAKNFTDIDDKIIKKVEETGKS------MQEITSYYIQRYLDEMEQLGVQRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + + +IQ +I AY +N ++ FDTS +YG S K+ + +RV Sbjct: 113 ATESLDAIEQMIQTLIDKDFAYVVSNGDVYFDTSKDSHYGDIS-HKVSDDDTQSRVEHNS 171 Query: 184 HKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYL---GKV-FDIHGGGL 238 K+NP DF LWK E + +P+ GRPGWHIECSAM Y G+ DIHGGG Sbjct: 172 EKRNPRDFALWKACKGEEDICFGAPFSSGRPGWHIECSAMIEKYFKGNGQYSIDIHGGGA 231 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE AQS CA E A W+HNGF+ + G KMSKS GN + + LE +G Sbjct: 232 DLLFPHHENEAAQSRCATGHE-LAKYWMHNGFVQINGEKMSKSLGNSFFLKDALEV--YG 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDP 349 G V+R + HYR +F + L A+ L K + ST Sbjct: 289 GE-----VLRYYLNSVHYRNDFNFNEEDLQTAKKRLDKLYRLKKRVLPGKASTVNKAFKQ 343 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA--SAHILGIEVCKEHL------ 401 A+L+A+ +DLN A+ + ++ E+ + D P A I IE L Sbjct: 344 ALLNAMSDDLNISIALAVIDEMIAETNEKLDTDPKNKALKKETIANIEFIDTLLGFGGKE 403 Query: 402 ---------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ + IE L+QER K K F+++D IR +L G + D Sbjct: 404 PFSYFQIGVDEALKEKIEILLQERTEAKKAKDFATSDAIRNELIDMGISIMD 455 >gi|308235882|ref|ZP_07666619.1| cysteinyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018] gi|311115022|ref|YP_003986243.1| cysteine--tRNA ligase [Gardnerella vaginalis ATCC 14019] gi|310946516|gb|ADP39220.1| cysteine--tRNA ligase [Gardnerella vaginalis ATCC 14019] Length = 529 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 169/523 (32%), Positives = 247/523 (47%), Gaps = 100/523 (19%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYG 62 ++++YNT + F + P ++ MYVCG TV HIG+ R I FDV+ R LLR Y Sbjct: 15 RLRLYNTATHNTSGFTTVTPGHVGMYVCGATVQSSPHIGHIRAAIAFDVVRRWLLRLGY- 73 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+VRN+TDIDDKII++A + + I ++F K L + PT + Sbjct: 74 --TVTFVRNVTDIDDKIIKKASENGQTWWQRAYIY------EREFTKAYNTLGVMPPTVE 125 Query: 123 PRATNHIPQMIYLIQNIILHGHAY---EANNE----IIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT HI M+ LIQ +I GHAY +AN + F S +YG+ + + + Sbjct: 126 PRATGHINDMVELIQRLINRGHAYAITDANGNPTGNVYFSVPSWQDYGALTHQNGNSDGS 185 Query: 176 GT----RVPEKYHKKNPAD----------FILWKRSTPME---PGWESPWGRGRPGWHIE 218 + +KY+ +PAD F LWK + W +P+G GRPGWHIE Sbjct: 186 NSDDKSSKADKYNPVDPADASPDKHDARDFALWKAPCDFDQKDARWNTPFGAGRPGWHIE 245 Query: 219 CSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKM 278 CSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A K+AN+W+H+ ++ +G KM Sbjct: 246 CSAMSHRYLGDSFDIHGGGLDLRFPHHENEMAQTLAAGW--KSANVWMHSAWVTSKGEKM 303 Query: 279 SKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI------ 332 SKS GN +++ +L K A V+R A+ YR ++++ Q LTEA+ Sbjct: 304 SKSLGNGLSVPSVLAQKS-------AWVVRYALGGVQYRAMLEWSDQSLTEAQSAYDRIS 356 Query: 333 --------LLSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQA-----------LH 369 ++ P + + + + A+ +D+N A+ A L Sbjct: 357 NFLERANRVIENQPDYAEVQSVDADNLPKDFTKAMNDDINVSGALAAIFTAIRSGNALLD 416 Query: 370 KLARESTKNH-------------------DLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 A+ +N D L + S + + L N + E Sbjct: 417 DYAQNQNENQSNGIKSLIKTCVLQVRAMLDTLGLDPYSPQWRNLSQKSQDLGANNGASAE 476 Query: 411 KLVQERLILLKM---------KKFSSADYIRKQLESKGFILED 444 V E LI ++ K F+ AD IR L + G ++ED Sbjct: 477 HKVLESLIANQLEQRAIARAAKDFARADAIRDSLTAAGVVIED 519 >gi|311106733|ref|YP_003979586.1| cysteinyl-tRNA synthetase 1 [Achromobacter xylosoxidans A8] gi|310761422|gb|ADP16871.1| cysteinyl-tRNA synthetase 1 [Achromobacter xylosoxidans A8] Length = 467 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 171/474 (36%), Positives = 235/474 (49%), Gaps = 43/474 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + +Y+T R + F I ++ MY CGPTVYD AHIGN R + D+L R L+R Y Sbjct: 3 LALYDTWSRTVRSFTPIHAGHVGMYCCGPTVYDHAHIGNLRTYVFEDILRRVLIRNGYE- 61 Query: 64 KCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 V +V NITD+ D + E S ++ I + T+ FV D L L P Sbjct: 62 --VRHVVNITDVGHLTSDADEGEDKMEKGSRRTGESAYAIAQRYTEAFVADWQALNLLEP 119 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 T RAT+HI + I I + G+ Y N+ + FDTS +YG +R + G RV Sbjct: 120 TVWCRATDHIAEQIAFIGQLDRSGYVYRTNDGLYFDTSKQDDYGFLARLDRAGLQAGKRV 179 Query: 180 PEKYHKKNPADFILWKRS-----TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 K+N DF LWK S ME W+SPWGRG PGWHIECSAMS+ +LG FDIH Sbjct: 180 ALGA-KQNITDFALWKFSPEGVVRQME--WDSPWGRGFPGWHIECSAMSAKHLGIWFDIH 236 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGNFITINELLE 293 GG D I HH NEIAQ+ A + AN WIH FL L KMSKS+G+F+ + L Sbjct: 237 CGGEDHIAVHHSNEIAQTQAAHGT-RLANFWIHGHFLTLNADSKMSKSSGDFVRLQTLRS 295 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI-------LLSKWPQTSTSKGI 346 R+ R + HYR + F+ L A+ L S WP G Sbjct: 296 ------RNIDPLAYRYLCMTAHYRSKLHFSWASLGAAQTALNRLRHLYSGWPD----GGR 345 Query: 347 IDPAVL----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH-L 401 IDP + L +DLN A+ L +L + L ++ +LG+ + + + Sbjct: 346 IDPDFAARFNAELNDDLNLPRALAVLWELVKSELPPATLKATVDSFDFVLGLGLRDWNPV 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +I +I L+ ER + K + AD IRK L ++G+ +ED ++GQR+T Sbjct: 406 ASDIPESIRVLLGERAQAREAKNWVKADEIRKMLNTRGWRVED---GNDGQRLT 456 >gi|325287202|ref|YP_004262992.1| cysteinyl-tRNA synthetase [Cellulophaga lytica DSM 7489] gi|324322656|gb|ADY30121.1| cysteinyl-tRNA synthetase [Cellulophaga lytica DSM 7489] Length = 494 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 243/490 (49%), Gaps = 54/490 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IK+YN+L K EF+ I+ +I MYVCGPTVY H+GN R + FD+++R ++ G Sbjct: 7 QTIKVYNSLSGKKEEFKPINDGHIGMYVCGPTVYSNVHLGNCRTFMSFDMIFRYFKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ + + T F Sbjct: 66 YK-VRYVRNITDAGHLVDDADEGEDKIAKKARLEQIE-PME-----VVQRYTVDFHNTLQ 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 + L P+ +P AT HI + I +I+ II G AYE N + FD + +YG S RK Sbjct: 119 KFNFLPPSIEPTATGHIIEQIEIIKEIIEKGFAYEVNGSVYFDVVEFNKTNDYGILSGRK 178 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + KKNP DF LWK++ P W SPWG G PGWH+EC+AMS+ YL Sbjct: 179 LEDMIANTRELAAQSDKKNPQDFALWKKAEPEHIMRWPSPWGDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FDIHGGG+DL FPHHE EIAQ+ ++ N W+H L L G+KMSKS N I Sbjct: 239 GETFDIHGGGMDLKFPHHECEIAQAQASNG-SAPVNYWLHANMLTLNGKKMSKSTDNNIY 297 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 NE+ +++ +R M+ HY +D + L +E K + TS Sbjct: 298 PNEIFSGDNNILSKAFSPSAVRFFMMQAHYTSILDLSNDALLASEKGYLKLMEAITSLKA 357 Query: 347 IDPA-------------VLSALYNDLNTVSAIQALH---------KLARESTKNHD---L 381 I+ A+ +D N+ I L K +E+ D L Sbjct: 358 IETGSKTEFDVAAWQQKCYDAMNDDFNSPILIAHLFEAVKHINLIKDGKETITKEDKELL 417 Query: 382 LPIFNASA-HILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 N A ILG+ E N N + + L+Q R K F+ +D IR QL + Sbjct: 418 ENTLNTFAFDILGLTGVNEDANGNSEKLEEVVNLLIQLRNDARSNKDFALSDQIRDQLLA 477 Query: 438 KGFILEDYKN 447 G L+D K+ Sbjct: 478 IGIQLKDGKD 487 >gi|227495626|ref|ZP_03925942.1| cysteine--tRNA ligase [Actinomyces coleocanis DSM 15436] gi|226830858|gb|EEH63241.1| cysteine--tRNA ligase [Actinomyces coleocanis DSM 15436] Length = 445 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 229/456 (50%), Gaps = 72/456 (15%) Query: 45 RPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 R + FD L R L+ G K VTYVRNITDIDDKI+ + S + + +K Sbjct: 2 RSAVAFDTLIRWLKRN-GMK-VTYVRNITDIDDKILRK------SAEVGEPWWAWAAKFE 53 Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG 163 ++F L L T +PRAT HI + LI +I GHAY + + FD S+ +YG Sbjct: 54 REFSAAYDALGLLPATFEPRATAHITDQLNLINRLIERGHAYADGQGNVYFDVHSLDDYG 113 Query: 164 SFSRRKI-------DEQKMGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRP 213 S +R+ + DE ++ + + K++ DF LWK + P EP W+SPWGRGRP Sbjct: 114 SLTRQDLANMRTTEDESQIDSAT--EAGKRDTRDFALWKSAKPTEPTTAAWDSPWGRGRP 171 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWH+ECSAMS YLG+ FDIHGGG+DL FPHHENE AQS A AN+W+HN ++ L Sbjct: 172 GWHLECSAMSERYLGETFDIHGGGIDLRFPHHENEQAQSHGAGW--GFANLWVHNAWVTL 229 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI- 332 +G KMSKS GN + + ++LET PAPV+R A+ H+R +++ + L A+ Sbjct: 230 KGEKMSKSLGNSLVVADILETV-------PAPVLRFALGTVHHRSTVEYGEETLAAAQAA 282 Query: 333 -------------LLSKWPQTSTSKGIID-----PAVLSALYNDLNTVSAIQALHK---- 370 LL++ S+G + A +A+ +DLN A+ ++++ Sbjct: 283 WDRLAGFVVRATQLLAENQVAEISEGELAQHPLPEAFAAAMNDDLNVAGALASVYERLKA 342 Query: 371 -----LARESTKNHDLLPIFNASAHILGIEVCKEHL----------NKNISIAIEKLV-- 413 A ++ L A ILG++ N A++ LV Sbjct: 343 GNSALTAGDTETVRVALCDVRAMLSILGLDPASTQWAPFVFGNGSSNNGAQHALDTLVSA 402 Query: 414 --QERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +ER K + AD +R +L G ++ED + Sbjct: 403 VIEERAQARADKDWGRADALRDRLTVAGIVVEDSAD 438 >gi|167584729|ref|ZP_02377117.1| Cysteine--tRNA ligase [Burkholderia ubonensis Bu] Length = 467 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+T R + F AI ++ +Y CGPTVYD AHIGN R + D+L R+L E Sbjct: 3 LALYDTWSRTLRPFTAIHDDHVGLYCCGPTVYDHAHIGNLRTYVFEDILRRVLTRNGHE- 61 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V +V NITD+ D + E S + I + T F D L L P+ Sbjct: 62 -VRHVVNITDVGHLTSDADEGEDKLEKGSRRTGRSAWEIAAHYTDAFKADWRALNLLEPS 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT+HI + I I+ I G+ Y ++ + FDTS +YG +R + G RV Sbjct: 121 IWCRATDHIAEQIAFIEEIERAGYVYRTDDGLYFDTSKQDDYGFLARLDRAGLQAGKRVA 180 Query: 181 EKYHKKNPADFILWKRSTPMEP----GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K+N DF LWK S P E W+SPWGRG PGWHIECSAMS+ YLG FDIH G Sbjct: 181 VGA-KRNATDFALWKFS-PAEVRRQMEWDSPWGRGFPGWHIECSAMSAKYLGVWFDIHCG 238 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G D + HH NEIAQ+ A + AN W+H FL L+ KMSKSNG+F+ + L + Sbjct: 239 GEDHVAVHHSNEIAQTEAAHGT-RLANFWMHGHFLTLDATKMSKSNGDFVRLQTLRD--- 294 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI-------LLSKWPQTSTSKGIIDP 349 R+ R L HYR ++F L ++ L S WP ++ Sbjct: 295 ---RNVDPLAYRYLCLTAHYRSKLNFNWTSLDASQTALNRLRQLYSGWPDGGSADAAFVA 351 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN-KNISIA 408 + + DLN A+ L +L + + L +LG ++ + ++ A Sbjct: 352 RFDAEVDQDLNMPRALAVLWELVKSNLPPATLKATMENFDAVLGFKLRDWRPSASDVPEA 411 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + L+ ER + ++ AD IR+ L+++G+ +ED K +GQR+T Sbjct: 412 VRALLGERERARAERNWARADEIRETLKARGWQIEDGK---DGQRVT 455 >gi|149057584|gb|EDM08827.1| rCG43187, isoform CRA_a [Rattus norvegicus] Length = 549 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 148/405 (36%), Positives = 213/405 (52%), Gaps = 54/405 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L K + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGKKEPLIVGRSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTSVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVSPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I IQ II HGHAY A + FD + + YG ++ T P Sbjct: 149 RVTENIPQIISFIQGIIAHGHAYATATGSVYFDLRARGDKYGKL----VNTVPSATAEPV 204 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P E W SPWG GRPGWHIECSAM+S G DIH GG+DL Sbjct: 205 DSDKRHSSDFALWKGAKPQEVFWASPWGDGRPGWHIECSAMASEVFGSQLDIHTGGIDLA 264 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + ++ N ++H+G L+++G+ KMSKS N+ITI + L+T Sbjct: 265 FPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLQT----- 319 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------- 336 + V RL L T+YR ID++ L EA LL Sbjct: 320 --FSPDVFRLFCLRTNYRSAIDYSDSTLEEARHLLLGLASFVEDARAYVKGQLICGPVGE 377 Query: 337 ---WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 W + +++K AV +AL ND +T A+ ++ L + + Sbjct: 378 DVLWERLASTK----KAVKAALANDFDTPRAVNSILDLVHHANRQ 418 >gi|305664986|ref|YP_003861273.1| cysteinyl-tRNA synthetase [Maribacter sp. HTCC2170] gi|88707398|gb|EAQ99643.1| cysteinyl-tRNA synthetase [Maribacter sp. HTCC2170] Length = 493 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 161/489 (32%), Positives = 246/489 (50%), Gaps = 53/489 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+K+ N+L K +F+ I+ +I MYVCGPTVY H+GN R + FD+++R ++ Sbjct: 6 EQKLKVSNSLTGKKQDFEPINEGHIGMYVCGPTVYSNVHLGNCRTFMSFDMIFRYFKHL- 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD +DKI ++AR E P+ + + T F Sbjct: 65 GYK-VRYVRNITDAGHLVDDADEGEDKIAKKARLEKIE-PME-----VVQRYTVDFHNIL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRR 168 + L P+ +P AT HI + + +I+ I+ AYE N + FD YG S R Sbjct: 118 DQFNFLPPSIEPTATGHIIEQLEIIKEILKKEFAYEVNGSVYFDVKKFNESFEYGKLSGR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 K+++ TR + + K++P DF LWK++ P W SPWG G PGWH+EC+AMS+ Y Sbjct: 178 KLEDMIANTRELTAQSDKRSPQDFALWKKAEPQHIMRWPSPWGDGFPGWHLECTAMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIHGGG+DL FPHHE EIAQ+ ++ N W+H L + G+KM+KS GN I Sbjct: 238 LGETFDIHGGGMDLKFPHHECEIAQAEASNG-HSPVNYWLHANMLTMNGKKMAKSTGNNI 296 Query: 287 TINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA----- 330 E+ K +++ V+R M+ HY +D + QRL EA Sbjct: 297 LPGEIFTGKNDILSKAFTPSVVRFFMMQAHYTSILDLSNDALLASEKGYQRLMEAVENLD 356 Query: 331 --------EILLSKWPQ---TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH 379 + + +W Q + + P +++ L+ + ++ IQ ++ S K Sbjct: 357 GLDAGGKSDFDVIEWRQKCYDAMNDDFNTPILIANLFEAVKHINLIQEGNESISISDKEL 416 Query: 380 DLLPIFNASAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 + +LG+E E + + +E L+Q R K F ++D IR QL + Sbjct: 417 LQQTMKGFVFEVLGLEQKNESGQDSNKLQGVVELLIQLRNEARSNKDFVTSDKIRDQLLA 476 Query: 438 KGFILEDYK 446 G L+D K Sbjct: 477 LGIQLKDGK 485 >gi|163786101|ref|ZP_02180549.1| cysteinyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159877961|gb|EDP72017.1| cysteinyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] Length = 493 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 172/489 (35%), Positives = 244/489 (49%), Gaps = 53/489 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IKIYNTL + F I ++ MYVCGPTVY H+GN R + FD+++R + G Sbjct: 7 QHIKIYNTLSGEKELFVPITEGHVGMYVCGPTVYSNVHLGNVRTFMSFDMIFRYFNHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ I + T F Sbjct: 66 YK-VRYVRNITDAGHLENDDDVGEDKITKKARLEAIE-PME-----IVQRYTVDFHNVLN 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 L P+ +P AT HI + I LI++II G AY N + FD + YG S+RK Sbjct: 119 TFNFLPPSIEPTATGHIIEQIELIESIIDKGFAYVVNGSVYFDVHKYNESNAYGILSKRK 178 Query: 170 IDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + KKNP DF LWK++ P W SPW G PGWH+EC+AMS+ YL Sbjct: 179 LEDLIHNTRTLDGQSDKKNPQDFALWKKAEPAHIMRWPSPWSDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FDIHGGG+DL FPHHE EIAQ+ A + + W+H L L G +MSKS+GN+I Sbjct: 239 GEYFDIHGGGMDLKFPHHECEIAQNQAA-KGQDPVKYWMHANMLELNGARMSKSSGNYIN 297 Query: 288 INELLETKKFG-GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK 336 ELL + + VIR M+ Y+ +D T RL +A L+ Sbjct: 298 PAELLSGNNDKMSKGYNPMVIRFFMMQASYKSVLDLTDAGLKAAEKGFNRLMDAINLIDN 357 Query: 337 WPQTSTSK---GIIDPAVLSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLL 382 + +S + A+ +D NT I L A+ ++++ D L Sbjct: 358 LKTSDSSSFDISVWKQKCYDAMNDDFNTPILIAHLFDAAKFINQIKDGSATVTSEDLDFL 417 Query: 383 --PIFNASAHILGI-EVCKEHLNKN-ISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 I + ILG+ V K+ N + ++ A+E L+ R K F+ +D IR +L Sbjct: 418 KQTIETFTFDILGLTNVSKDDSNTDKLTGAVEILINLRKEARLNKDFALSDKIRDELAEA 477 Query: 439 GFILEDYKN 447 G L D ++ Sbjct: 478 GIQLNDSRD 486 >gi|57505460|ref|ZP_00371388.1| cysteinyl-tRNA synthetase [Campylobacter upsaliensis RM3195] gi|57016285|gb|EAL53071.1| cysteinyl-tRNA synthetase [Campylobacter upsaliensis RM3195] Length = 454 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 156/446 (34%), Positives = 225/446 (50%), Gaps = 48/446 (10%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I MY+CGPTVYD AH+G+AR I FD+L R+L G K + + RN TDIDDKI+++ ++ Sbjct: 20 ITMYLCGPTVYDHAHLGHARSSICFDLLRRVL-LSLGRK-LYFARNYTDIDDKILKKMQE 77 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 S+ IT K + +D L L P +P+AT +I QMI LI ++ G Sbjct: 78 SGESLEQ------ITQKYIAHYERDMKNLRVLEPDLKPKATEYIKQMIELILHLQRQGFT 131 Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 Y + I FDTS +Y S S+R ++ + TR+ E+ KKN ADF+LWK E + Sbjct: 132 YTLEDGIYFDTSKDKDYLSLSKRSFEDNQ--TRLNEQKEKKNEADFVLWKFD---EGFYA 186 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 +P+G+GRPGWH EC AM DIH GG+DL FPHHENE AQ CA + A+ W Sbjct: 187 APFGKGRPGWHSECVAMIEALFKDSLDIHAGGVDLFFPHHENEAAQCRCAFN-KNLASHW 245 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +HNGF+N+ G KMSKS N I + L K+F G + +R ++ HYR +++++ Sbjct: 246 LHNGFVNINGEKMSKSLNNSFFIEDAL--KEFSGEA-----LRFYLMSVHYRAHFNYSLE 298 Query: 326 RLTEAEILLSKWPQTSTSKGI-------------IDPAVLSALYNDLNTVSAIQALH--- 369 L+ + L K + + + +L AL +DLN A+ Sbjct: 299 DLSLCKKRLDKLYRLKKRLDLNLLEDKPKKCERELSLTILQALQDDLNISKALALFDEFI 358 Query: 370 -----KLARESTKNHDLLPIFNASAHILGIEV------CKEHLNKNISIAIEKLVQERLI 418 KL L F A I G+ ++ +K IE + +R Sbjct: 359 ANANLKLDENKALKEGLREDFKELAFIFGVGFEDVILYFQQGFSKEQIAWIETQIAKRSE 418 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 K K ++ AD +R+ L G +L D Sbjct: 419 AKKAKDYALADKLRQDLAEFGVVLLD 444 >gi|315453045|ref|YP_004073315.1| cysteinyl-tRNA synthetase [Helicobacter felis ATCC 49179] gi|315132097|emb|CBY82725.1| cysteinyl-tRNA synthetase [Helicobacter felis ATCC 49179] Length = 474 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 158/480 (32%), Positives = 245/480 (51%), Gaps = 55/480 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IY++ ++ + + ++++Y+CGPTVYD AH+G+AR I FD+L R L Sbjct: 2 QAVYIYDSKTKQKQLLEPLVGHDVKIYICGPTVYDHAHLGHARSAIAFDLLRRTLE--QS 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V+N TDIDDKII +A QE S S ++++ + + D L P + Sbjct: 60 GYVVEMVKNFTDIDDKIIAKAAQEGVS------TSALSARYIESYTADMQALGVQKPHLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT H+ M +IQ ++ GHAY+ +++I DT YGS S +E + +R+ + Sbjct: 114 PKATAHLGAMFNIIQQLLDKGHAYQIDHDIYLDTHKDQAYGSLSGHIYNEADV-SRLEDN 172 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA-----MSSHYLGKVFDIHGG 236 K++P DF LWK + G+ESP+G+GRPGWH+ECS+ M+ H DIH G Sbjct: 173 PLKRHPQDFALWKSYKGESDVGYESPFGKGRPGWHLECSSMIFANMAYHDQAYQIDIHAG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENE Q+ CA ++ A W+HNGF+N+ G KMSKS GN + + L+ Sbjct: 233 GSDLFFPHHENEACQTRCAFS-QELAKYWMHNGFVNISGEKMSKSLGNSFYVKDALKI-- 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGII 347 + ++R +L HYR + F + L ++ L K + T T Sbjct: 290 -----YDGEIVRNYLLGIHYRAVLHFNEEDLLASKKRLDKIYRLKKRALECATKTPPPSP 344 Query: 348 DP----AVLSALYNDLNTVSAIQAL-------HKLARESTKNH------DLLPIFNASAH 390 +P A L AL +DLN A+ L +++ ++TK +L + Sbjct: 345 NPNFQRAFLQALQDDLNISKALSVLEEHVHVCNEILDQATKQTRASMACAILEDLDYVNT 404 Query: 391 ILG------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG I + ++ + IE+ + RL K K F+ AD IR+ L +G +L D Sbjct: 405 LLGLGGKDPIAYFQLGVDATLLAHIEEQIARRLEAKKAKDFALADRIREDLAHQGILLMD 464 >gi|322379889|ref|ZP_08054175.1| cysteinyl-tRNA synthetase [Helicobacter suis HS5] gi|321147684|gb|EFX42298.1| cysteinyl-tRNA synthetase [Helicobacter suis HS5] Length = 475 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/488 (32%), Positives = 251/488 (51%), Gaps = 67/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I ++++ ++ F + +++Y+CGPTVYD++H+G+AR IVFD+L R+L Sbjct: 1 MHPPIYLFDSHHKQKRPFVPLKAPKVKIYICGPTVYDYSHLGHARSAIVFDLLTRMLT-- 58 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+N TDIDDKII +A QE + I D ++ + ++++ L L PT Sbjct: 59 LSGYSVEIVKNFTDIDDKIISKALQE--GVNITD----LSRRFIASYLEEMQALGVLRPT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P+A+ H+ + +I+ ++ G+AY+ I DT YGS S ++ + + +R+ Sbjct: 113 SEPKASEHLEAIEDMIKRLLEKGYAYQTKEGSIYLDTRLDSAYGSLSAHSLEAENV-SRI 171 Query: 180 PEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDI 233 + K +P DF LWK + G+ S +G+GRPGWHIECSAM ++ L + DI Sbjct: 172 EDNLEKHHPQDFALWKTYKGEGDLGYLSAFGKGRPGWHIECSAMIANTLAYLDEPYQIDI 231 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG DL FPHHENE Q+ CA ++ A WIHNGF+N+ G+KMSKS GN I + L+ Sbjct: 232 HGGGSDLFFPHHENEACQTRCAFN-QELAQFWIHNGFVNISGQKMSKSLGNSFYIKDALK 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------PQTST 342 + V+R +L HY + F + L + L K P+ S Sbjct: 291 V-------YDGEVLRNYLLGVHYSAILHFNEEDLNSQKKRLDKLYRLKKRALEISPEKSK 343 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 S A+L A+ +DLN A+ L + +ES ++ D NAS+ + C + + Sbjct: 344 SNQNFQHALLQAMQDDLNISKALSILEEYLQESNQSLD-----NASSKT-NKKKCAQEIL 397 Query: 403 KNIS------------------IAIEKLVQERL---ILLKM-----KKFSSADYIRKQLE 436 +N++ + ++ +++++ IL + K F+ AD IRK L Sbjct: 398 ENLTFIDQLLGLGGKDPTLYFQLGVDTALKDKITTQILRRQKAKEAKDFALADSIRKDLA 457 Query: 437 SKGFILED 444 +G L D Sbjct: 458 QQGISLMD 465 >gi|300770934|ref|ZP_07080811.1| cysteine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300762207|gb|EFK59026.1| cysteine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 488 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 172/491 (35%), Positives = 243/491 (49%), Gaps = 54/491 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNT+ RK +F I PS + MYVCGPTVY H+GN R + FD+++R L + Sbjct: 1 MENNLVLYNTISRKKEKFNPIHPSMVGMYVCGPTVYSDVHLGNCRTFVSFDLIFRYL-LH 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD DDK ++A+ E P+ I K T F D Sbjct: 60 LGYK-VRYVRNITDAGHLEGDRDEGDDKFAKKAKLEQLE-PME-----IVQKYTIGF-HD 111 Query: 111 TTRL-ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 RL L P+ +P AT HI + I +I+ II +G+AYE N + FD +Y + Sbjct: 112 VLRLFNTLPPSIEPTATGHISEQIEMIKQIIDNGYAYEVNGTVYFDVEKYVQKYDYTVLT 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RK+++ TR + + K+ DF LW ++ P W +PW G PGWHIECSAMS+ Sbjct: 172 NRKLEDLLNNTRELGGQDEKRGRLDFALWIKAKPEHIMRWPAPWSTGFPGWHIECSAMSN 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL HH NEIAQS + A W+H L + G +MSKS+GN Sbjct: 232 KYLGAQFDIHGGGMDLAATHHTNEIAQSEACNHT-SPARYWMHTNMLTVNGARMSKSSGN 290 Query: 285 FITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 EL R + +R ML HYR +DF+ +RL A L Sbjct: 291 GFLPQELFTGNHPLLERGYSPMAVRFFMLQAHYRSTLDFSNEALDAADKGFKRLMNAIAL 350 Query: 334 LSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKLAR--------ESTKNH-- 379 L+K + + G I +A+ +D N+ I L ++ R +ST N Sbjct: 351 LNKITPSKATSGFNLEDIRKNCYAAMDDDFNSPILIAELFEVVRIINSIYDGKSTINQKG 410 Query: 380 -DLLPIF--NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 D L F + ILG+ N+ + ++ R + K F+++D IR++L Sbjct: 411 LDELKAFMKDFVEDILGLNDDSNAGTDNMDELMNVIINIRNSAKQNKDFATSDRIREELS 470 Query: 437 SKGFILEDYKN 447 S G L+D K+ Sbjct: 471 SIGIQLKDSKD 481 >gi|322378637|ref|ZP_08053073.1| cysteinyl-tRNA synthetase [Helicobacter suis HS1] gi|321148944|gb|EFX43408.1| cysteinyl-tRNA synthetase [Helicobacter suis HS1] Length = 475 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/488 (32%), Positives = 251/488 (51%), Gaps = 67/488 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I ++++ ++ F + +++Y+CGPTVYD++H+G+AR IVFD+L R+L Sbjct: 1 MHPPIYLFDSHHKQKRPFVPLKAPKVKIYICGPTVYDYSHLGHARSAIVFDLLTRMLT-- 58 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V V+N TDIDDKII +A QE + I D ++ + ++++ L L PT Sbjct: 59 LSGYSVEIVKNFTDIDDKIISKALQE--GVNITD----LSRRFIASYLEEMQALGVLRPT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P+A+ H+ + +I+ ++ G+AY+ I DT YGS S ++ + + +R+ Sbjct: 113 SEPKASEHLEAIEDMIKRLLEKGYAYQTKEGSIYLDTRLDSAYGSLSAHSLEAENV-SRI 171 Query: 180 PEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDI 233 + K +P DF LWK + G+ S +G+GRPGWHIECSAM ++ L + DI Sbjct: 172 EDNLEKHHPQDFALWKTYKGEGDLGYLSAFGKGRPGWHIECSAMIANTLAYLDEPYQIDI 231 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG DL FPHHENE Q+ CA ++ A WIHNGF+N+ G+KMSKS GN I + L+ Sbjct: 232 HGGGSDLFFPHHENEACQTRCAFN-QELAQFWIHNGFVNISGQKMSKSLGNSFYIKDALK 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------PQTST 342 + V+R +L HY + F + L + L K P+ S Sbjct: 291 V-------YDGEVLRNYLLGVHYSAILHFNEEDLNSQKKRLDKLYRLKKRTLEISPEKSK 343 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 S A+L A+ +DLN A+ L + +ES ++ D NAS+ + C + + Sbjct: 344 SNQNFQHALLQAMQDDLNISKALSILEEYLQESNQSLD-----NASSKT-NKKKCAQEIL 397 Query: 403 KNIS------------------IAIEKLVQERL---ILLKM-----KKFSSADYIRKQLE 436 +N++ + ++ +++++ IL + K F+ AD IRK L Sbjct: 398 ENLTFIDQLLGLGGKDPTLYFQLGVDTALKDKITTQILRRQKAKEAKDFALADSIRKDLA 457 Query: 437 SKGFILED 444 +G L D Sbjct: 458 QQGISLMD 465 >gi|146300023|ref|YP_001194614.1| cysteinyl-tRNA synthetase [Flavobacterium johnsoniae UW101] gi|187629820|sp|A5FHM5|SYC_FLAJO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146154441|gb|ABQ05295.1| cysteinyl-tRNA synthetase [Flavobacterium johnsoniae UW101] Length = 492 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 174/488 (35%), Positives = 239/488 (48%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L + F+ I N+ MYVCGPTVY H+GN R + FDV++R + + + Sbjct: 9 LKIYNSLSGEKENFKPIHEGNVGMYVCGPTVYSNVHLGNVRTFMSFDVIFRY--FLHLDY 66 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD+ +DKI ++AR E P+ + + T F Sbjct: 67 KVRYVRNITDVGHIVDDVDEGEDKIAKKARLEQLE-PME-----VVQRYTVDFHDILKAF 120 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRKID 171 L P+ +P AT HI + I +I+ II G YEAN + FD + NYG S R I+ Sbjct: 121 NFLPPSIEPTATGHIIEQIEIIKKIIDTGIGYEANGSVYFDVVKYNETNNYGVLSGRNIE 180 Query: 172 EQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGK 229 + TR + + K+NP DF LWK++ P W SPW G PGWH+EC+AMS+ YLG Sbjct: 181 DMLANTRDLDGQSDKRNPQDFALWKKAEPEHIMRWPSPWSDGFPGWHLECTAMSTKYLGN 240 Query: 230 VFDIHGGGLDLIFPHHENEIAQ--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 FDIHGGG+DL FPHHE EIAQ +C + N W+H L L G+KM+KS GN I Sbjct: 241 HFDIHGGGMDLKFPHHECEIAQNEACTG---QSPVNYWMHTNMLTLNGKKMAKSTGNNIL 297 Query: 288 INELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI-------LLSKWPQ 339 E+L +++ A V R ML HYR +DF+ +T AE L P Sbjct: 298 PGEILSGDNTILSKAFSASVTRFFMLQAHYRSILDFSDDAITAAEKGYKRLMEALEALPA 357 Query: 340 T-STSKGIID-----PAVLSALYNDLNTVSAIQALHKLAR---------ESTKNHDLLPI 384 + S +D A A+ +D NT I L + R E+ DL Sbjct: 358 IKAGSSSSVDFAAWKQACYDAMNDDFNTPILIAQLFEAVRYINLLKEGKETISAEDLKSF 417 Query: 385 FNA----SAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 A +LG+ E + N + + L+ R K F+ +D IR QL + Sbjct: 418 STAINAFVFDVLGLSDEKAADGNNDKLEGVVNMLIGMRNQARADKNFALSDQIRDQLIAL 477 Query: 439 GFILEDYK 446 G L+D K Sbjct: 478 GIQLKDGK 485 >gi|261749164|ref|YP_003256849.1| cysteinyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497256|gb|ACX83706.1| cysteinyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 484 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 167/491 (34%), Positives = 250/491 (50%), Gaps = 63/491 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 ++ I+IYN+ K F+ I I +YVCGPTVY+ H+GN R I+FD+++R ++ Sbjct: 10 IRDHIQIYNSFTGKKELFKPIHKEYIGIYVCGPTVYNHLHLGNCRTFILFDLVFRYFKHL 69 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V Y+RNITD+ +DKI +R+R E P+ I K T F Sbjct: 70 -GYK-VRYIRNITDVGHLENDSDDGEDKIHQRSRFEGIE-PME-----IVQKYTLSFHHI 121 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSR 167 L P+ +P AT HI + I +IQ +I AYE N + FD S + +YG S Sbjct: 122 LNIFNTLPPSIEPTATGHIIEQIDMIQKLIQKNLAYENNGSVYFDVKKYSQLCSYGILSH 181 Query: 168 RKIDE--QKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 +ID+ +K + EK H + DF LWK++ W SPWG+G PGWHIEC+ MS+ Sbjct: 182 NRIDQLFKKESNFLGEKRHFQ---DFSLWKKAKHSHIMNWNSPWGKGVPGWHIECTTMST 238 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG+VFDIHGGG+DL FPHHE E+AQ+ A+ W+H L L G+KMSKS GN Sbjct: 239 KYLGEVFDIHGGGIDLKFPHHECELAQAIGVYNKNHLAHYWMHTNMLTLNGKKMSKSTGN 298 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI------------ 332 +++ +L+ + +IR +L +HYR ++F+ + L +AE Sbjct: 299 YLSTKDLVS-------KYHPIIIRFFILQSHYRSLLNFSQKGLIDAEKGYHRLINAIEKL 351 Query: 333 -LLSKWPQTSTSKGIIDPAV---LSALYNDLNTVSAI----QALHKLARESTKNHDLLPI 384 SK + + SK ++ + A+ +D NT I Q +H L D + + Sbjct: 352 EFFSKSDKKNISKFDVNKWIKNCYEAINDDFNTPLLISHLFQVIHILNHSINYIGDSIHL 411 Query: 385 FNASAH-----ILGIEVCK----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + ILG++ + E +K + I E L++ R+ K + + +D IR++L Sbjct: 412 LKKYMNHFLFDILGLQKIEKNPFEKTSKKLKILTEILIKIRIEARKKRNWVLSDLIREEL 471 Query: 436 ESKGFILEDYK 446 G L D K Sbjct: 472 SRIGISLHDDK 482 >gi|255524399|ref|ZP_05391356.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|296187519|ref|ZP_06855914.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|255511956|gb|EET88239.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|296048041|gb|EFG87480.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] Length = 471 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 169/488 (34%), Positives = 246/488 (50%), Gaps = 55/488 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNT+ RK +F I + MY CGPTVY+FAHIGN R I DVL + LRY E V Sbjct: 5 VYNTMSRKKEKFVPILEGKVGMYTCGPTVYNFAHIGNLRTYIFEDVLKKSLRYLGYE--V 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V NITD+ +DK+ A++E N ++ I F+ D +L Sbjct: 63 KHVMNITDVGHLQSDADEGEDKMELGAKRE------NKSVWEIAKFYENAFLDDCKKLNV 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 PT RAT HI MI LI+ + G+ Y +N + ++ +Y + ++E + G Sbjct: 117 ETPTVICRATEHIDDMINLIKKLEEKGYTYISNGNVYYEIDKFEDYNKLANLSMEELEAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 RV +KKNP DF+LW ++ + W+SPWGRG PGWH+ECSAMS YLG+ D+ Sbjct: 177 NRVEVDENKKNPLDFVLWFTNSKFKNQIMQWDSPWGRGFPGWHLECSAMSMKYLGERIDV 236 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+D I HH NEIAQS A K N W+H FL L+ KMSKS G+F+T+N+L E Sbjct: 237 HCGGVDHIPVHHTNEIAQSEGAIG-HKWVNYWMHGEFLVLDSGKMSKSKGDFLTVNKLEE 295 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--TSTSKGIIDPAV 351 + V R L + YR+ + F+ L +AEI K + +K + Sbjct: 296 ------EGFNPLVYRYFCLQSRYRKQLLFSFDALKDAEIAYKKLKNKVAALAKDAKEDQR 349 Query: 352 LS-------------ALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNASAHILGI 394 L + +DLN +A L ++ ++ S + L+ F+ + Sbjct: 350 LDLEKIKNYKNKFAEKISDDLNMPNAFTVLWEVVKDNELTSREKCHLVESFDTVLSMNLF 409 Query: 395 EVCKE-HLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E +E +L+ NI S +++L++ER + K K +S AD IR +L + D K Sbjct: 410 EPNEEQNLDSNIDSELVDELIKERDMARKNKDWSKADEIRDKLSFMNIEILDSKEG---- 465 Query: 453 RMTRWKQK 460 T+WK K Sbjct: 466 --TKWKLK 471 >gi|319952072|ref|YP_004163339.1| cysteinyl-tRNA synthetase [Cellulophaga algicola DSM 14237] gi|319420732|gb|ADV47841.1| cysteinyl-tRNA synthetase [Cellulophaga algicola DSM 14237] Length = 493 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 173/489 (35%), Positives = 247/489 (50%), Gaps = 55/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +K+YN+L + F +I I MYVCGPTVY H+GN R + FD+++R ++ G Sbjct: 7 QHLKVYNSLTGQKEPFTSIHEGAIGMYVCGPTVYSNVHLGNCRTFMSFDMIFRYFKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ + + T F Sbjct: 66 YK-VRYVRNITDAGHLENDAEDGEDKIAKKARLERIE-PME-----VVQRYTVDFHNILQ 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRK 169 + L P+ +P AT HI + I +I+ I+ G AYE N + FD + NYG S RK Sbjct: 119 KFNFLPPSIEPTATGHIIEQIEIIKEILEKGFAYEVNGSVYFDVPKFNETHNYGKLSGRK 178 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K +P DF LWK++ P W SPWG G PGWH+EC+AMS+ YL Sbjct: 179 LEDMIANTRELAAQDDKHSPQDFALWKKAEPQHIMRWPSPWGDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FDIHGGG+DL FPHHE EIAQ+ ++ + N W+H L L G+KM+KS GN I Sbjct: 239 GETFDIHGGGMDLKFPHHECEIAQAEASNGVSPV-NYWLHANMLTLNGKKMAKSTGNNIL 297 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSK 336 +E+ T +++ V+R M+ HY +D + +L EA + K Sbjct: 298 PDEIFSGTNPLLSKAFTPTVVRFFMMQAHYTSILDLSNDALLASEKGFLKLMEALNTIHK 357 Query: 337 WPQTSTSKGIIDP---AVLSALYNDLNTVSAIQALH---------KLARESTKNHD---L 381 S+S + A+ +D NT + I L K +ES D L Sbjct: 358 LETNSSSDFDFNAWQQKCYDAMNDDFNTPTLIAHLFEAVKHINAIKEGKESISEMDKALL 417 Query: 382 LPIFNASA-HILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 FNA ILG+E K N + +S + L+Q R K F+++D IR QL Sbjct: 418 NNTFNAFIFDILGLE-DKNDANSDTDKLSGVVALLIQLRKEARDNKDFATSDIIRDQLAE 476 Query: 438 KGFILEDYK 446 G L+D K Sbjct: 477 LGIQLKDGK 485 >gi|292655283|ref|YP_003535180.1| cysteinyl-tRNA synthetase [Haloferax volcanii DS2] gi|291370540|gb|ADE02767.1| cysteinyl-tRNA synthetase [Haloferax volcanii DS2] Length = 494 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 164/507 (32%), Positives = 242/507 (47%), Gaps = 82/507 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL + EF++ + +YVCG TV D AH+G+AR + D+++R L Y + Sbjct: 3 LSVTNTLTGEREEFES-HGDEVLLYVCGLTVSDHAHLGHARLWMHADLMHRWLDYEGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+++KI R ++ + D + + ++D L PR Sbjct: 61 -VRHVENFTDVNEKIAARIGED----DLGDDEAGVAEHFVGDVIRDMRGLNLKRAEVYPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HIP++I L+Q ++ GHAYE+N + FD S+ +YG S +K++E + E+ Sbjct: 116 VSEHIPEIIDLVQTLVDRGHAYESNGSVYFDVSTFDDYGKLSNQKLEELESRATKDERSE 175 Query: 185 KKNPADFILWK------------RSTPMEP-------GWESPWGRGRPGWHIECSAMSSH 225 K+NP DF LWK R +EP WESPWG GRPGWHIECSAMS Sbjct: 176 KRNPTDFALWKAGAVDPKTAAEHRDPDLEPLHAPCGETWESPWGEGRPGWHIECSAMSMT 235 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 +LG DIH GG DL+FPHHENEIAQS A ++ A W+H G L EG KMS S GNF Sbjct: 236 HLGDTLDIHVGGRDLVFPHHENEIAQSEAA-TGQQFARYWLHVGLLQTEGDKMSSSLGNF 294 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG 345 T+ + L+ +FG A VIR L T Y ++ + + EAE +W + + Sbjct: 295 FTVGDALD--EFG-----ADVIRTFYLSTAYGSEQTYSAETIAEAE---ERWERLERAYE 344 Query: 346 IIDPAVLS-------------------------ALYNDLNTVSAIQALHKLARESTKN-- 378 AV S A+ +D N A+ L LA ++ Sbjct: 345 AAVDAVDSPDARTKVEATDLRDTVTETRENFREAMNDDFNVREAMAELLGLAGAVNRHVA 404 Query: 379 ----HDLLPIFNA-------SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK--- 424 +D + A + G+ ++S+A E LVQ L + + ++ Sbjct: 405 DADEYDYRALRRAVEAFEDLGGEVFGLSFGDAGEGGDVSVA-EDLVQLVLDVREAEREAG 463 Query: 425 -FSSADYIRKQLESKGFILEDYKNPDN 450 + AD +R L + G +ED PD Sbjct: 464 NYERADDLRDDLTALGVDVED--GPDG 488 >gi|229818303|ref|ZP_04448584.1| hypothetical protein BIFANG_03603 [Bifidobacterium angulatum DSM 20098] gi|229784173|gb|EEP20287.1| hypothetical protein BIFANG_03603 [Bifidobacterium angulatum DSM 20098] Length = 548 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 168/527 (31%), Positives = 250/527 (47%), Gaps = 104/527 (19%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYG 62 ++K+Y+T ++ F I P + MYVCG TV HIG+ R + FD++ R L+ Y Sbjct: 30 RLKLYDTASHAVSTFTPIKPGEVGMYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY- 88 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+VRN+TDIDDKI+++A E ++F + + L L PT + Sbjct: 89 --QVTFVRNVTDIDDKILDKAAAEGQQWWAR------AYHYEREFSQAYSDLGVLPPTVE 140 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDE--- 172 PRAT H+ MI +IQ II +GHAY + + FD +S P+YG + +K Sbjct: 141 PRATGHMADMIDMIQRIIDNGHAYVVRGDDGKPTGNVYFDVASWPHYGELTHQKQTAVAD 200 Query: 173 ------QKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWG 209 MG V +KY+ K +P DF LWK S P++ W +P+G Sbjct: 201 AASEVADAMGPSVDNAGDDKYNPVDPADASPDKHDPRDFALWKAPKDSDPLDARWNTPFG 260 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECSAMS YL FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ Sbjct: 261 TGRPGWHIECSAMSHRYLKDGFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSA 318 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 ++ +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L E Sbjct: 319 WVTAKGEKMSKSLGNGLSVPAVLAENS----AW---VVRYALGGVQYRSMLEWSDQTLAE 371 Query: 330 AE--------------ILLSKWPQTSTSKGIIDPAV----LSALYNDLNTVSAIQA---- 367 A+ I + + P + + A+ ++A+ +D+N A A Sbjct: 372 AQSAYDRISNFIERAGIAIGEQPSRTEVASVPADALPADFVAAMNDDINVSGATAAIFTA 431 Query: 368 -------LHKLARESTKN------HDLLPIFNASAHILGIEVCKE-------------HL 401 L KLA + + ++L A LG++ E Sbjct: 432 IRSGNTLLSKLADRADSDAAKAEVREVLLGVRAMLDTLGLDPLAEPWVNGGAAGGAAGEG 491 Query: 402 NKNISIAIEKLVQERLI----LLKMKKFSSADYIRKQLESKGFILED 444 ++ L++E+L K K F+ AD IR L + G +ED Sbjct: 492 ESAEHDVLDSLIREQLTARAEARKAKDFAKADAIRDALNAAGIAIED 538 >gi|325971494|ref|YP_004247685.1| cysteinyl-tRNA synthetase [Spirochaeta sp. Buddy] gi|324026732|gb|ADY13491.1| cysteinyl-tRNA synthetase [Spirochaeta sp. Buddy] Length = 471 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/470 (34%), Positives = 233/470 (49%), Gaps = 42/470 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R + F I S + +Y CGPTVY++AHIGN R + D+L R LR Sbjct: 3 VLLYNTMSRALEPFHPIKESEVGLYSCGPTVYNYAHIGNLRTFLFEDLLKRTLRV--SGF 60 Query: 65 CVTYVRNITDI-------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 V +V NITD+ DD + + H + N I + T+ F KD L + Sbjct: 61 TVNHVMNITDVGHLTGDGDDGEDKLEKMAHTT---NRTAWEIAAFYTEAFFKDYDDLNMI 117 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 P+ +AT+H+ QMI LI+ + GH Y + + F SIP+YG +R +D + Sbjct: 118 RPSTVCKATDHVQQMIDLIKRLEAGGHTYISGGNVYFSIDSIPDYGKLARLDLDALRTAV 177 Query: 178 R--VPEKYHKKNPADFILW-KRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 R V +KKN DF+LW +S E W+SPWGRG PGWHIECSAMS HYLG+ FD Sbjct: 178 REDVEVDGNKKNSKDFVLWFTKSKHGEQAMMWDSPWGRGFPGWHIECSAMSMHYLGESFD 237 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+D I HH NEIAQS A + N W+H FL E KMSKS G F+T++ LL Sbjct: 238 IHCGGIDAIPVHHTNEIAQSEAATG-KGWVNYWLHGEFLLDETGKMSKSKGEFLTLS-LL 295 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------TSTSKGI 346 +K + + R L HYR + F+ L+ A T +K + Sbjct: 296 TSKGYEPMDY-----RYFCLGGHYRSQLKFSFDSLSTARTARRNVYDRIQNLLTQGAKQV 350 Query: 347 I---------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD---LLPIFNASAHILGI 394 + A L + NDLNT A+ L + ++ + D L +F L Sbjct: 351 VLQRDEALAYQTAFLQHIQNDLNTPRALADLWGVLKDENLSIDEKYSLCLFFDQVFGLKF 410 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + L+ +R K + ++ AD +R +LES G++++D Sbjct: 411 DSITKAEEQTFPSQALALLDQRTEAKKARNWALADSLRSELESMGYVVKD 460 >gi|158300888|ref|XP_001238361.2| AGAP011821-PA [Anopheles gambiae str. PEST] gi|157013377|gb|EAU75859.2| AGAP011821-PA [Anopheles gambiae str. PEST] Length = 525 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 156/452 (34%), Positives = 227/452 (50%), Gaps = 62/452 (13%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR 58 + +++Y+ ++ Q I PS + Y CGPTVYD AHIG+A + D+L R+LR Sbjct: 16 LTHDLRLYDGRLKEKVALQ-IHPSKSYLSFYTCGPTVYDSAHIGHASCYVRLDILQRILR 74 Query: 59 YYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 +++ VT + NITDIDDKII RA ++ + + +F D RL A Sbjct: 75 HHFHLPLVTAM-NITDIDDKIIARALEQQVDW------QQLARRYEDEFWSDLQRLNVCA 127 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 P + R T+HIP +I +Q ++ G AY A+ + F+T+ YG + I+ + + Sbjct: 128 PDVKLRVTDHIPAIIRFVQTLVEKGFAYSTADGSVYFETAKYERYGKLQKVIIEPESNAS 187 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K K++ +DF LWK S P EP W +P + GRPGWHIECS ++SH G+ D H G Sbjct: 188 ----KGQKRHQSDFALWKASKPGEPFWTAPGFSHGRPGWHIECSTLASHLFGRTIDFHAG 243 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLET 294 GLDL FPHHENE QSCC + W+H G L+LEG+ KMSKS N ++I ELL Sbjct: 244 GLDLRFPHHENEETQSCCYHDVPDWVTHWLHTGQLHLEGQTHKMSKSLKNTVSIGELLG- 302 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIID---PA 350 ++ A R+ L++HYR I++ + + A +L K+ S +K ID PA Sbjct: 303 ------AYSADEFRMLCLLSHYRSAIEYGPEAMGTARNVLRKFASFFSDAKAYIDGLKPA 356 Query: 351 VLSA--------------------LYNDLNTVSAIQALHKLARE----------STKNHD 380 A L ND NT +++ AL +LA ST Sbjct: 357 AYDATSTESLLGKLSNTRTTVREFLKNDFNTANSVLALGELASNVQRIINSHEPSTSGVS 416 Query: 381 LLPIFNASAHILGIEVCKEHLNKNISIAIEKL 412 L+ N A + E +E L +S ++ L Sbjct: 417 LIGSSNVGAVLAVTEYIREEL---VSYGVQSL 445 >gi|242024681|ref|XP_002432755.1| Cysteinyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212518240|gb|EEB20017.1| Cysteinyl-tRNA synthetase, putative [Pediculus humanus corporis] Length = 530 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 242/464 (52%), Gaps = 43/464 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYN ++ + ++ + ++ Y+CGPTVY+ +H+G+A + FD++ R+L +G + Sbjct: 41 IKIYNKIKNEKVPLILLNKNFVKWYLCGPTVYNSSHVGHASTYVRFDIIRRILEQNFGIR 100 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + ITDIDDKII++A ++ + K +F K+ L L+PT R Sbjct: 101 PVVAL-GITDIDDKIIKKANL------LSTNFKTLAKKYELEFFKNLKDLNVLSPTFVLR 153 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEII-FDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ++HIP +I I I+ AY + + FDT+S YG K++ + P + Sbjct: 154 VSDHIPHIIDFIYKIVDKRQAYVSKEGCVYFDTASFGKYG-----KLNPIPLENSDPVRI 208 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+ DF LWK + P EP W+SPWG GRPGWHIECSAM+S G D+H GG+DL FP Sbjct: 209 GKKSYLDFTLWKAAKPGEPFWDSPWGNGRPGWHIECSAMASEIFGSKMDLHSGGIDLKFP 268 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQSC ++ N W+H+G L ++ KMSKS NFITI+E L+T + Sbjct: 269 HHENEEAQSCSYHDCDQWVNYWLHSGQLMIDDEKMSKSLNNFITIDEFLKT-------YS 321 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA--------EILL-------SKWPQTSTSKGII- 347 + +R+ +HYR + ++ + + A + L+ S W + + + II Sbjct: 322 SDHMRMFCFESHYRNALHYSSESMKTAVSTCNLFSDFLMDANSYIKSNWYKGNVEESIIL 381 Query: 348 --DPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNAS-AHILGIEVCKEHLN 402 + L +D NT + +L L + + + N ++ + S + ++ E L Sbjct: 382 KMSNVIKDCLMDDFNTSQCLISLMNLTKNTVRMMNEEVTVTSSRSPGAVAAVKTYVEGLL 441 Query: 403 KNISIAIE-KLVQERLILLKMKK-FSSADYIRKQLESKGFILED 444 K+ ++ L QE +KM+ +SA R+++ + L+D Sbjct: 442 KSFGFQLDTALSQEGEDDIKMEFILNSAINFRQEVRKEALALKD 485 >gi|47226781|emb|CAG06623.1| unnamed protein product [Tetraodon nigroviridis] Length = 499 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 212/410 (51%), Gaps = 56/410 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L ++ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 14 LKVFNSLTKQKEPLILAREGVATWYSCGPTVYDHAHLGHACSYVRFDIVQRILTRLFG-I 72 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +TDIDDKII+R+ +E N ++I S +F +D L + P R Sbjct: 73 TVIHAMVVTDIDDKIIKRSWEE------NICSTVIASLYEDEFKRDMLSLKVIPPAVYLR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 T ++PQ++ I+ II +GHAY A ++ FD SI YG F + + G+ Sbjct: 127 VTENVPQIVSFIERIIENGHAYAAREGDVYFDIKSIGERYGKFGGAADSQPEPGS----- 181 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWKRS EP WESPWGRGRPGWHIECS ++S G DIH GG+DL F Sbjct: 182 -HKRDARDFALWKRSKAGEPSWESPWGRGRPGWHIECSTIASTVFGSQLDIHSGGIDLAF 240 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS + + AN ++H+G L+L+ KMSKS N+ITI + L + Sbjct: 241 PHHENEIAQSEAYHQCGQWANYFLHSGHLHLKSSAEKMSKSLKNYITIKDFL-------K 293 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------------------ 336 S+ A R+ L++ YR +D++ + EA L Sbjct: 294 SFSANEFRMFCLLSKYRSAVDYSDGSMLEARSSLGSICSFMHDAGAYMKGQLQCTSVQEA 353 Query: 337 --WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 W + + +K +V+ AL D +T A+ A+ L + N L P+ Sbjct: 354 FLWERLAEAKS----SVVEALAEDFDTPRAVSAVMNLVHHA--NRQLQPV 397 >gi|298242724|ref|ZP_06966531.1| cysteinyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] gi|297555778|gb|EFH89642.1| cysteinyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] Length = 486 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 240/485 (49%), Gaps = 56/485 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K + IYNTL RK FQ ++P + +Y CGPTVY H+GN R ++ D L R+L Y Sbjct: 7 KPVYIYNTLTRKRELFQPLNPPGVGIYSCGPTVYKDIHVGNFRTFMMTDWLRRMLEY--N 64 Query: 63 EKCVTYVRNITDI-----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACL 117 V VRNITD+ DD + E+ + + I + T+Q+++D L L Sbjct: 65 GYDVYLVRNITDVGHLQNDDVESGEDKLEYEARTTGRSAYDIAQRYTEQYMRDAAELNIL 124 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 P P+AT+HI +M+ + Q ++ G AY A+ + +D + P YG S ++ + G Sbjct: 125 PPHLSPKATDHIGEMLEMTQALVEKGLAYIADGNVYYDVAHFPEYGKLSGNTVENLRAGG 184 Query: 178 RVPEKYH----KKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 E+ K++P DF LWK+ + W SPWG G PGWHIECSAM++ YLG+ FD Sbjct: 185 HGREQMEVAEDKRSPEDFALWKKGDEGRQMNWGSPWGSGFPGWHIECSAMATKYLGEQFD 244 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR-------------KMS 279 IH GGLDL+FPHHE+EIAQS E W+H FL + R KMS Sbjct: 245 IHTGGLDLMFPHHEDEIAQSQGTFGKEPV-KYWVHGEFLIIGNRKMKASNENGDDSIKMS 303 Query: 280 KSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL------ 333 +S GN + ++ L E R ML HYR I++T + A+ Sbjct: 304 RSKGNVLLVSTLKE------EGIDPMAFRYLMLTAHYRSKINYTDDSIQAAQNALNNLRD 357 Query: 334 -LSKWPQT------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP--- 383 L++ P T S + A A+ NDL+ +A+ L RE+ +N + P Sbjct: 358 DLAELPITEQTANWSEEAQRVRDAFREAINNDLDLPTAL----VLTRETVRNAKIEPAER 413 Query: 384 --IFNASAHILGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + +LG+ + K + I+ ++++V++R K + +D +R +L++ G Sbjct: 414 RHLVLDFDRVLGLRLDTVEPKKPLEISDEVKEIVRQRDEARAAKNWKRSDQLRDELKALG 473 Query: 440 FILED 444 F + D Sbjct: 474 FEVRD 478 >gi|224436533|ref|ZP_03657542.1| cysteinyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] gi|313143036|ref|ZP_07805229.1| cysteinyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] gi|313128067|gb|EFR45684.1| cysteinyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] Length = 504 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 161/511 (31%), Positives = 251/511 (49%), Gaps = 89/511 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++++++++ +F+ I P +R+YVCGPTVYD AH+G+AR I FD+ RL + + + Sbjct: 2 ITLFDSIKKQKLKFEPISPKQVRIYVCGPTVYDDAHLGHARSSIAFDLWRRL--FLFLDF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +N TDIDDKII+++ Q S + ++ + + ++ D L L P +P+ Sbjct: 60 KVIFAKNFTDIDDKIIKKSLQNGIS------VEEVSERYIELYLNDMHALGILRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM +I+ ++ G+AY+ NN++ + YGS S+R EQ +R+ Sbjct: 114 ATSNLPQMHEMIEQLLQKGYAYKGENNDVYLSIAKDKAYGSLSQRTTHEQNQ-SRITNAN 172 Query: 184 HKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGK------------- 229 K+ +DF LWK + ++SP+G+GRPGWHIECSAM +L Sbjct: 173 DKQEESDFALWKGYKGEDDIAYDSPFGKGRPGWHIECSAMIEKHLAYDMREKQEYEKQEF 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG DL+FPHHENE +Q+ CA E A W+HNGF+N+ G KMSKS GN I Sbjct: 233 AIDIHAGGADLLFPHHENEASQTRCATGRE-LAKYWLHNGFVNINGEKMSKSLGNSFFIK 291 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE----------------AEIL 333 + L+ + ++R +L HYR ++F + L + AE + Sbjct: 292 DALKV-------YDGEILRNYLLGVHYRLALNFNEEDLLQSKKRLDKIYRLKKRIMAERI 344 Query: 334 LSKWPQT-----------------------STSKGIIDPAVLSALYNDLNTVSAIQALHK 370 PQT + I P +L AL +D N A+ + + Sbjct: 345 ADSIPQTKALDSTELADQLESLNTLKTHTKNAQDSFIKP-LLEALSDDYNISKALSIIEE 403 Query: 371 LARESTKNHDLLPIFNA-SAHILGIEVCKEHL----NKNISI------------AIEKLV 413 + S D P A I G C E+L +K+ ++ IE + Sbjct: 404 MLSISNDYLDKNPKDKAYKLAISGNLACIEYLLGLGDKDPTLYFQLGLTEQERQDIESKL 463 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILED 444 Q R K K + AD IR +L+S+G + D Sbjct: 464 QARTEAKKQKNYVLADSIRDELKSQGIEIMD 494 >gi|206896033|ref|YP_002247201.1| cysteinyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] gi|206738650|gb|ACI17728.1| cysteinyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] Length = 460 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 237/483 (49%), Gaps = 56/483 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+TL RK + + I YVCG T YD H+G+ R +VFD+ +R ++ G K Sbjct: 1 MKLYDTLSRKFVDLEKKPGEKIAGYVCGITPYDEPHLGHVRTALVFDLFHRYVKAQ-GYK 59 Query: 65 CVTYVRNITDIDDKIIERARQE--HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V N TD+DDKIIER+ Q HP A++ I + + + + P + Sbjct: 60 PV-FVSNFTDVDDKIIERSVQLSIHPF-----ALAEIYERLYYKLMD----FLNVEPLYA 109 Query: 123 P-RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-QKMGTRVP 180 R + IP +I I+ +I HAY + + F S PNYG S RK+++ + +RV Sbjct: 110 YIRVSQVIPDIIEAIKQLIDKKHAYVTPDGVYFSVPSFPNYGELSGRKVEDISLLESRVE 169 Query: 181 EKYHKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 KK+P DF LWK P E W SPWG GRPGWHIEC+ +S + G D HGGG D Sbjct: 170 PSPFKKDPRDFALWKSRKPNETVWWHSPWGDGRPGWHIECTVISVKFAGFPLDFHGGGSD 229 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENE AQS E A W+H G L + +M KS GNFI E++ Sbjct: 230 LIFPHHENEKAQSEALMGQEPFARAWMHTGMLRIGKEEMHKSLGNFIGATEIMA------ 283 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------W--------PQTST 342 + V+R +L T+YR+P+ F+ + +A ++ W Q + Sbjct: 284 -KYDPDVLRYLLLSTYYRDPVTFSEEVYNQAANTVNNLRSYFERLDWVSRDGEARTQVVS 342 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIF--NASAHILGI 394 SAL +DLN+ +A+ +HKL + +T ++ F + + G+ Sbjct: 343 LVASAKETFHSALEDDLNSSAALAEVHKLIAQLRVEDLNTSEASIVKQFLTHGLRTVFGL 402 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + K K I+ +V+ R K KKFS AD IR L G +LED K Sbjct: 403 RLTKN--GKVDESLIQDMVELRNDFRKQKKFSEADAIRDMLLRHGIVLEDTKEG------ 454 Query: 455 TRW 457 TRW Sbjct: 455 TRW 457 >gi|32266016|ref|NP_860048.1| cysteinyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449] gi|61216291|sp|Q7VIT7|SYC_HELHP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|32262065|gb|AAP77114.1| cysteinyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449] Length = 488 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 195/339 (57%), Gaps = 24/339 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I ++++ +++ F I + IR+YVCGPTVYD AH+G+AR IVFD+ RL + E Sbjct: 2 ITLFDSAKKQKIPFTPIQDNQIRLYVCGPTVYDDAHLGHARSSIVFDLWRRLFLFLGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII+++ Q N ++ I S ++KD L L +P+ Sbjct: 61 -VVFVKNFTDIDDKIIKKSLQN------NASVQEIGSHYIHSYLKDMASLGVLRADIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM +IQ ++ G+AYE N++I NYG+ S+R +++ +R+ Sbjct: 114 ATDNLPQMCEMIQTLLHKGYAYEGENSDIYLRIHKDKNYGALSQR-LEQSHTQSRIQNAQ 172 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K DF LWK + ++SP+G+GRPGWHIECSAM +L DIH GG Sbjct: 173 DKLEHNDFALWKGYKGENDIAYDSPFGKGRPGWHIECSAMIEKHLAYQNEEYGIDIHAGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE +Q+ CA E A W+HNGF+N+ G KMSKS GN I + L+ Sbjct: 233 SDLLFPHHENEASQTRCATGRE-IAKYWLHNGFVNINGEKMSKSLGNSFFIKDALKV--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 + ++R +L HYR ++F + L +++ L K Sbjct: 289 ----YDGEILRNYLLGVHYRLALNFNEEDLLQSKKRLDK 323 >gi|289583246|ref|YP_003481712.1| cysteinyl-tRNA synthetase [Natrialba magadii ATCC 43099] gi|289532799|gb|ADD07150.1| cysteinyl-tRNA synthetase [Natrialba magadii ATCC 43099] Length = 498 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 155/505 (30%), Positives = 237/505 (46%), Gaps = 87/505 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL + F+ DP N+ +Y CG TV D H+G+AR + DV++R L Y + Sbjct: 3 LHVTNTLTGEKEPFEPQDPENVLLYYCGLTVSDPPHLGHARSWVHVDVMHRWLEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TDI++KI+ R ++ + + + + ++ + D L L PR Sbjct: 62 -VRHVENFTDINEKIVARVGEDE----LGEGEAEVAETYIERTLADMRSLNLLRAEVYPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HIP++I L++ +I G+AYE+N + FD SS YG S +++DE + E+ Sbjct: 117 VSEHIPEIIDLVETLIEKGYAYESNGSVYFDVSSFEEYGKLSNQELDEIESQGDPDERSE 176 Query: 185 KKNPADFILWKRSTPMEPG----------------------WESPWGRGRPGWHIECSAM 222 K+NPADF LWK + +EPG W+SPWG GRPGWHIECSAM Sbjct: 177 KRNPADFALWK-ADGVEPGDIEEHRHEAAAPAEHACETALTWDSPWGEGRPGWHIECSAM 235 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 S+ +L DIH GG DL+FPHHENE+AQS A ++ AN W+H + KMS S Sbjct: 236 STTHLDDTLDIHVGGRDLVFPHHENEVAQSEAA-TGQQFANYWLHCELFQMADEKMSSSL 294 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST 342 GNF+T++E ++ W VIR + Y ++ + + EA +W Q Sbjct: 295 GNFVTVDEAVD-------QWGTNVIRTFLTAGSYNSQQLYSDETIAEAR---ERWEQLER 344 Query: 343 S-----KGIIDPAV--------------------LSALYNDLNTVSAIQALHKLA----- 372 + + + PA +A+ +D NT A AL +A Sbjct: 345 AHERAVEAVDSPAARTKVEDDDLRTAVDEARETFTTAMNDDFNTREAQSALLSVASAINA 404 Query: 373 -RESTKNHD------LLPIFNASAHILGIEVCKEHLNKN------ISIAIEKLVQERLIL 419 RE +D + ILG+ + + + ++ QER Sbjct: 405 HREDRDEYDYRGLRRAIDTLEELGAILGLSFTGDTTGSAALAGDVVDLVLDVREQER--- 461 Query: 420 LKMKKFSSADYIRKQLESKGFILED 444 + AD +R +LES G ++D Sbjct: 462 -ADGNYERADDLRDELESLGVEVQD 485 >gi|312131550|ref|YP_003998890.1| cysteinyl-tRNA synthetase [Leadbetterella byssophila DSM 17132] gi|311908096|gb|ADQ18537.1| cysteinyl-tRNA synthetase [Leadbetterella byssophila DSM 17132] Length = 496 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 136/346 (39%), Positives = 192/346 (55%), Gaps = 26/346 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +K+YN+L RK F+ ++P + MYVCGPTVY+ H+GN R + FD+LYR L + G Sbjct: 2 QALKLYNSLSRKKELFEPLNPGYVGMYVCGPTVYNNVHLGNIRTFLTFDILYRYL-LHTG 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ +DKI + A+ E P+ + + T F Sbjct: 61 YK-VRYVRNITDVGHLVGDGDEGEDKIGKIAKLEKLE-PME-----VVQRYTNDFHDVLN 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRR 168 + L P+ +P AT H+ + I +Q++I G AYE+N + FD + NYG S R Sbjct: 114 QFNFLPPSIEPSATGHLIEQIEAVQDLIQKGLAYESNGSVYFDINKYNEAGNNYGKLSGR 173 Query: 169 KIDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 +++ TR + + K+NP DF LWK++ P W SPWG+G PGWH+EC+ MS Y Sbjct: 174 ILEDLLNETRALDGQAEKRNPLDFALWKKAAPEHIMQWNSPWGKGFPGWHLECTCMSVKY 233 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG FDIHGGG+DL FPHHE EIAQ E W+H+ L + G+KMSKS GN Sbjct: 234 LGNQFDIHGGGMDLKFPHHECEIAQGKGLTG-EDPVRYWMHSNMLTVNGQKMSKSLGNSF 292 Query: 287 TINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 EL+ +++ +R ML +HYR +DF+ L A+ Sbjct: 293 LPRELITGDHPLLEQAYSPMTVRFFMLQSHYRSTLDFSNDALKAAQ 338 >gi|269964028|ref|ZP_06178334.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831247|gb|EEZ85400.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 457 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 158/462 (34%), Positives = 233/462 (50%), Gaps = 37/462 (8%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K++++NTL R + F I+ + +Y CGPTVYD+AH GN R + DVL R L Sbjct: 3 QSKLQLFNTLGRTLEPFNTIESGKVGLYACGPTVYDYAHAGNLRTYLFVDVLRRTLEL-- 60 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 V +V NITD+ +DK+ + AR++ N + I F+ D Sbjct: 61 NGYDVNHVMNITDVGHLVSDADTGEDKMEKGARKQ------NKSAWEIAKYFEDAFLDDL 114 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID 171 T L P+ RAT HI + I +Q + Y+ ++ + FD++ +P+YG ++ + Sbjct: 115 TSLNITKPSIICRATEHIQEQIEFVQELEQKSFTYQTSDGVYFDSAKLPDYGKLAKLDRE 174 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRS--TPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + G RV E KK+P DF LWK S TP + WESPWG G PGWHIECSAM+ YLG+ Sbjct: 175 GLEAGIRV-EMAEKKSPTDFALWKFSGDTPRQMEWESPWGVGFPGWHIECSAMAEKYLGE 233 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 VFDIH GG D I HH NEIAQ C A AN W+H FL L K+SKS G + ++ Sbjct: 234 VFDIHVGGEDHIPVHHTNEIAQ-CQAKNGHVQANYWLHGFFLQLNKEKISKS-GTSLRLD 291 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------SKWPQTST 342 +E + + R +L +HYR + FT + L A+ L S P+ Sbjct: 292 AFIE------KGYDPLTYRYLVLTSHYRSHLSFTWESLDAAQTALKRLKAKVSALPEGGK 345 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 + +S + NDL AI + +L + D + G+E+ K Sbjct: 346 VDQMYVERFVSLINNDLAMPQAIALMWELLGSVLNDADKKATARYFDRVFGLELDKV-EE 404 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I + I +LV+ RL + K K++ AD IR+++ G+ + D Sbjct: 405 EEIPLEILELVELRLEMKKQKEYQQADEIRQKVAEIGYRIND 446 >gi|255037654|ref|YP_003088275.1| cysteinyl-tRNA synthetase [Dyadobacter fermentans DSM 18053] gi|254950410|gb|ACT95110.1| cysteinyl-tRNA synthetase [Dyadobacter fermentans DSM 18053] Length = 500 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 141/350 (40%), Positives = 195/350 (55%), Gaps = 38/350 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL RK F I P + MYVCGPTVY+ H+GN R + FD+L+R L + G K Sbjct: 9 LKIFNTLTRKKDVFVPIAPPYVGMYVCGPTVYNNVHLGNIRTFLSFDILFRYLTHI-GYK 67 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD+ +DKI + A+ + P+ I + T F + T Sbjct: 68 -VRYVRNITDVGHLVGDGDEGEDKIGKMAKLQKLE-PME-----IVQRYTNDFHEVTAVF 120 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRRKI 170 L+P+ +P AT H+ + I ++ +I G AYE+N + FD + YG S R I Sbjct: 121 NLLSPSIEPTATGHLIEQIEAVEALIEKGVAYESNGSVYFDINKYQAGGNEYGKLSGRII 180 Query: 171 DEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 ++ TR + + K+NP DF LWK+++P WESPWG+G PGWH+EC+ MS+ YLG Sbjct: 181 EDLLNETRDLDGQAEKRNPLDFALWKKASPEHIMQWESPWGKGFPGWHLECTCMSAKYLG 240 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN---- 284 K FDIHGGG+DL FPHHE EIAQ E+ W+H L + G+KMSKS GN Sbjct: 241 KQFDIHGGGMDLKFPHHECEIAQGKSLTG-EEPVRYWMHTNMLTVNGQKMSKSLGNSFLP 299 Query: 285 ---FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 F +ELLE +++ +R ML + YR +DF+ L A+ Sbjct: 300 AELFSGNHELLE------QAYSPMTVRFFMLQSQYRSTLDFSNDALKAAQ 343 >gi|296453539|ref|YP_003660682.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. longum JDM301] gi|296182970|gb|ADG99851.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. longum JDM301] Length = 546 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 176/548 (32%), Positives = 257/548 (46%), Gaps = 120/548 (21%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 29 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 88 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A ++F + L L PT Sbjct: 89 ---KVTFVRNVTDIDDKILDKAAA------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 139 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY---EANNE----IIFDTSSIPNYGSFSRRK----I 170 +PRAT H+ MI LIQ I+ +GH Y +AN + + FD +S P+YG + +K + Sbjct: 140 EPRATGHMSDMIDLIQRILDNGHGYVVTDANGKPTGNVYFDVASWPHYGELTHQKQTSEV 199 Query: 171 DE-----QKMGTRV----PEKYH----------KKNPADFILWKR---STPMEPGWESPW 208 DE +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 200 DEAAAVADRMGPSVDATGADKYNPVDPADASPDKHDPRDFALWKAPKDTDPEDARWSTPF 259 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+C A +A W+H+ Sbjct: 260 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTCAAGY--PSAARWMHS 317 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 318 AWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALV 370 Query: 329 EAE--------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQA--- 367 EA+ + L P + S + ++A+ +D+N A A Sbjct: 371 EAQAAYDRVSNFIERAGVALGGQPSREEVAAVSADDLPADFVAAMNDDVNVSGATAAIFT 430 Query: 368 --------LHKLA------------RES---------TKNHDLL--PIFNASAHILGIEV 396 L +LA RE+ T D L P +A G Sbjct: 431 AIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVSAGGAADGTAE 490 Query: 397 CKEHLNKNISIAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 EH A+E L+ E+L K K F+ AD IR L G +ED G Sbjct: 491 SPEH------AALEALIAEQLNARAEARKAKDFAKADQIRDALTEAGIAIED------GP 538 Query: 453 RMTRWKQK 460 + + W K Sbjct: 539 QGSTWSLK 546 >gi|295148062|ref|NP_001171155.1| hypothetical protein LOC361184 [Rattus norvegicus] gi|183986065|gb|AAI66536.1| RGD1311612 protein [Rattus norvegicus] Length = 550 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 148/406 (36%), Positives = 213/406 (52%), Gaps = 55/406 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L K + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGKKEPLIVGRSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTSVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVSPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I IQ II HGHAY A + FD + + YG ++ T P Sbjct: 149 RVTENIPQIISFIQGIIAHGHAYATATGSVYFDLRARGDKYGKL----VNTVPSATAEPA 204 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ +DF LWK + P E W SPWG GRPGWHIECSAM+S G DIH GG+DL Sbjct: 205 VDSDKRHSSDFALWKGAKPQEVFWASPWGDGRPGWHIECSAMASEVFGSQLDIHTGGIDL 264 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + ++ N ++H+G L+++G+ KMSKS N+ITI + L+T Sbjct: 265 AFPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLQT---- 320 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------------- 336 + V RL L T+YR ID++ L EA LL Sbjct: 321 ---FSPDVFRLFCLRTNYRSAIDYSDSTLEEARHLLLGLASFVEDARAYVKGQLICGPVG 377 Query: 337 ----WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 W + +++K AV +AL ND +T A+ ++ L + + Sbjct: 378 EDVLWERLASTK----KAVKAALANDFDTPRAVNSILDLVHHANRQ 419 >gi|291524578|emb|CBK90165.1| cysteinyl-tRNA synthetase [Eubacterium rectale DSM 17629] Length = 475 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 165/480 (34%), Positives = 235/480 (48%), Gaps = 51/480 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K YNTL R+I I MY CGPTVY FAHIGN R I+ DVL + LRY Sbjct: 1 MENNFKFYNTLTRQIDTVVPRVDGKIGMYTCGPTVYHFAHIGNIRSYIMEDVLEKALRYV 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V V NITD+ +DK+++ A++EH S+ + + T F KD Sbjct: 61 GYD--VKRVMNITDVGHLSSDGDTGEDKMLKGAKREHKSV------MEVAKEYTDAFFKD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 T + P ATN IP+ I++++ +I G+AY A + FDTS + +Y FS Sbjct: 113 FTAVHNRMPDVVEPATNCIPEFIHMVEVLIEKGYAYFAGGNVYFDTSKLDDYFVFSSAVE 172 Query: 171 DEQ-KMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSS 224 EQ ++G R V E +KKN DF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KEQLQVGVRDDVEEDVNKKNKNDFVLWFTQSKFEDQALKWDSPWGVGYPGWHIECSCISM 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +LG+ DIH GG+D IFPHH NEIAQS W H LN KMSKS G Sbjct: 233 KHLGEYVDIHCGGVDNIFPHHTNEIAQSESY-LGHDWCKYWFHVNHLNDRAGKMSKSKGA 291 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-- 342 +T++ L E + + R L +HYR+P++F+ L A +K + Sbjct: 292 ILTVSVLQE------KGYNPLAYRFFCLQSHYRKPLEFSFDALDNAVAAYNKIAKRVAEL 345 Query: 343 -SKGIIDPAVLS--------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 +G ID + A+ NDLNT AI ++ + + + L + + +L Sbjct: 346 KDEGDIDETAFADFKKKFTDAVSNDLNTSMAITIVYDVLKADISDRTKLALIDDFEQVLD 405 Query: 394 IEV---------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + + I + ER K K F++AD IR +L +KG ++D Sbjct: 406 LGLRESGKALLEASSSADSELEAFINDKITERAAAKKAKDFATADAIRDELLAKGVAIKD 465 >gi|294787393|ref|ZP_06752646.1| cysteine--tRNA ligase [Parascardovia denticolens F0305] gi|294484749|gb|EFG32384.1| cysteine--tRNA ligase [Parascardovia denticolens F0305] Length = 550 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 168/554 (30%), Positives = 249/554 (44%), Gaps = 123/554 (22%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T K+ +F+ + P + MYVCG TV H+G+ R + FDV+ R E Sbjct: 16 VRIYDTAHHKVMDFRPVTPGKVTMYVCGATVQASPHVGHVRAGVSFDVIRRWFMKLGYE- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKI+++A + + Q+F + L L PT++PR Sbjct: 75 -VTFVRNVTDIDDKILDKAAADGQNWWAR------AYYYEQEFSQAYRVLGVLTPTYEPR 127 Query: 125 ATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT H+ M+ L+Q +I GHAY + + FD S P+YG + ++ Q G Sbjct: 128 ATGHVTDMVDLVQRLIDRGHAYLIPNPDGSPSGNVYFDVPSWPHYGELTHQQAGTQATGD 187 Query: 178 RVP---------------EKYH----------KKNPADFILWKRS---TPMEPGWESPWG 209 +KY+ K +P DF LWK S P+ W +P+G Sbjct: 188 ESARIADAMGPSVDAAGEDKYNPADEADLSEEKHDPRDFALWKASKDSDPLTARWRTPFG 247 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWH+ECSAMS YLG FDIHGGGLDL FPHHENE+AQS A A+ W+H+ Sbjct: 248 TGRPGWHLECSAMSHRYLGDEFDIHGGGLDLRFPHHENEMAQSRAAGW--GFAHYWMHSA 305 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 ++ +G KMSKS GN ++I +L W ++R A+ YR ++++ Q + E Sbjct: 306 WVTQKGEKMSKSLGNGLSIPVVLSQCT----PW---MVRYALATVQYRSMLEWSQQTIAE 358 Query: 330 AEILLSKWP-----------QTSTSKGIIDPA------VLSALYNDLNTVSAIQALHKLA 372 A+ S+ Q S + PA ++A+ +D N +A+ A+ Sbjct: 359 AQSAYSRISNFLDHAGAAVGQPSRQEVTSYPADQLPQDFIAAMNDDFNVSTALAAVFSSI 418 Query: 373 R-ESTKNHDLLPIFNASAHILGIEVCKEHL------------------------------ 401 R +T +DL + S I + KE L Sbjct: 419 RYGNTTMNDLATLPEGSERDQAITLLKESLLLVRAMLDVFGLDPLDPQWLPGGDGFPAQA 478 Query: 402 -----------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +K + I + +R K K F+ AD IR L + G +ED Sbjct: 479 EDSAQADKTSGASSSQTSKVLDSLIRSQLDQRQAARKAKDFARADAIRNSLAAAGISIED 538 Query: 445 YKNPDNGQRMTRWK 458 G + + WK Sbjct: 539 ------GPQGSSWK 546 >gi|187251570|ref|YP_001876052.1| cysteinyl-tRNA synthetase [Elusimicrobium minutum Pei191] gi|186971730|gb|ACC98715.1| Cysteinyl-tRNA synthetase [Elusimicrobium minutum Pei191] Length = 460 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 231/466 (49%), Gaps = 42/466 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L ++ + I+ MY CGPTVY++AHIGN R I D+L R LR E Sbjct: 1 MQLYNSLTKEKEKIVPINVDYATMYACGPTVYNYAHIGNLRTYIFEDILVRALRL---EM 57 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V N+TD+ DDK+ A +E S I ++F +D L Sbjct: 58 PVKHVMNVTDVGHLTSDGDSGDDKMELGAAREGKSA------WDIAKFYEKKFFEDFDSL 111 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF-SRRKIDEQ 173 C+ P+ RAT HI +MI L+ + G Y+ ++ I +DTS +Y I Sbjct: 112 NCVRPSVISRATEHIKEMIELVSILEQKGFTYKTSDGIYYDTSKFSHYHDLVGASHISGL 171 Query: 174 KMGTRVPEKYHKKNPADFILWK---RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 K G RV K+NP+DF LWK + + W+SPWG G PGWHIECSAM+ YLG Sbjct: 172 KSGARVEFNTEKRNPSDFALWKFSPKDKKRQMEWDSPWGTGFPGWHIECSAMAMKYLGPT 231 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D + HH NEIAQS A ++ W+H FL L KMSKS+G F+T++ Sbjct: 232 IDIHCGGIDHVAIHHTNEIAQSEAATG-KQYVRYWVHGEFLVLHAGKMSKSDGTFLTLDA 290 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIID 348 L E + + R L HYR ++FT + L A+ L + + G++D Sbjct: 291 LKE------KGYKPLDYRYLCLGAHYRTQLEFTFESLDFAKASLKGLRDRAKALKDGVVD 344 Query: 349 PAVL--------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH 400 A + +AL +DLNT + + + + + + + + +++ K Sbjct: 345 EAQVEEFKAKFAAALKDDLNTSKGLAVIWETLKSNAADGTKKEFLKYTEFVFALDLFKVE 404 Query: 401 LNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I ++ L+ ER K K F +D +R ++ + GFI++D Sbjct: 405 KEAGVEIPAEVQSLLDERANARKEKDFKKSDELRDKINTLGFIVKD 450 >gi|332291036|ref|YP_004429645.1| cysteinyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332169122|gb|AEE18377.1| cysteinyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 494 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 164/487 (33%), Positives = 246/487 (50%), Gaps = 54/487 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ +YN+L K F+ + + MYVCGPTVY H+GN R + FD+++R L++ G Sbjct: 7 QELTVYNSLSGKKELFKPLLEGYVGMYVCGPTVYSNVHLGNVRTFMSFDMIFRYLKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ + K T F Sbjct: 66 YK-VRYVRNITDAGHLTDDADQGEDKIAKKARLEKIE-PME-----VVQKYTLDFHDILN 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRK 169 + L P+ +P AT HI + + +I+ II +G+AYE N + FD YG S RK Sbjct: 119 KFNFLPPSIEPTATGHIIEQMEIIKKIIDNGYAYEKNGSVYFDVVKFNKDHEYGKLSGRK 178 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K+NP DF LWK++ P W SPWG G PGWH+EC+AMS+ YL Sbjct: 179 LEDMIANTRTLNAQDEKENPQDFALWKKAEPQHIMRWPSPWGDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G FDIHGGG+DL FPHHE EIAQ+ A E W+H L L G+KM+KS GN I Sbjct: 239 GDQFDIHGGGMDLKFPHHECEIAQNEAALGTE-PVRYWLHANMLTLNGQKMAKSTGNSIN 297 Query: 288 INELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL--- 333 E+ + + + V R +L T YR +DF+ RL EA + Sbjct: 298 PGEIFSGDSEHLSKGFAPSVARFFILQTSYRSIMDFSNDALLASEKGFHRLMEALKIAKN 357 Query: 334 LSKWPQTSTSKGIIDPAVLSALYNDLNT-------VSAIQALH--KLARESTKNHDLLPI 384 L+ ++S + +A+ +D NT A++ +H K + + DL + Sbjct: 358 LTVSKESSFDVTAWKQSCYNAMNDDFNTPILIAQLFEAVKQIHLIKDGKATITAEDLKLL 417 Query: 385 FNASA----HILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 + +LG+E + + ++ +E L++ R + K F+ +D IR +L Sbjct: 418 LDTLEAFVFDVLGLEDNNAFAKADDSKLNGTVELLIKLRKEARENKDFALSDKIRDELIE 477 Query: 438 KGFILED 444 G L+D Sbjct: 478 LGIQLKD 484 >gi|26553474|ref|NP_757408.1| cysteinyl-tRNA synthetase [Mycoplasma penetrans HF-2] gi|61216349|sp|Q8EX28|SYC_MYCPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|26453480|dbj|BAC43812.1| cysteinyl-tRNA synthetase [Mycoplasma penetrans HF-2] Length = 439 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 129/330 (39%), Positives = 188/330 (56%), Gaps = 23/330 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRL-LRYYYGE 63 +KIY+ + + E ++D NI+MYVCGPTVY+ HIGN RP+I FDVL RL L Y Sbjct: 1 MKIYDFVSKTDKEV-SLDKKNIKMYVCGPTVYNHVHIGNLRPIITFDVLNRLFLELGYN- 58 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ- 122 VT++ NITDIDDKI+ +A++E+ + + + TQ F D + + ++ Sbjct: 59 --VTFIHNITDIDDKIVNKAKEENIG-----ELELSSYYETQYF--DILKTINIHTSNMK 109 Query: 123 -PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR ++HI + IQ I+ + AY + ++ FDT+ YG S +K+DE +G + + Sbjct: 110 FPRVSDHIKDIENYIQKIVNNKFAYLVDGDVYFDTTKSNQYGKISNKKLDELLVGDKSED 169 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K NP DF LWK++T + W+ + GRPGWH ECS + + YLG DIHGGG+DL Sbjct: 170 NLKKNNPQDFALWKQTT-IGLNWDLKFSTGRPGWHTECSCLINKYLGDQIDIHGGGIDLK 228 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE Q+ + + A IW+H G LN+ +KMSKS NFI +LL Sbjct: 229 FPHHENENIQNIAVNN-KDLARIWMHVGHLNINNQKMSKSLSNFILAKDLL-------SE 280 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 + +R T Y P++FT + L ++ Sbjct: 281 YNTNTVRWFFYQTSYSNPLNFTTENLINSK 310 >gi|225022147|ref|ZP_03711339.1| hypothetical protein CORMATOL_02180 [Corynebacterium matruchotii ATCC 33806] gi|224945080|gb|EEG26289.1| hypothetical protein CORMATOL_02180 [Corynebacterium matruchotii ATCC 33806] Length = 445 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 222/454 (48%), Gaps = 57/454 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MY+CG T HIG+ R + FD++ R L V +VRN+TDIDDKI+ +A + Sbjct: 1 MYLCGATPQTNPHIGHVRSGVAFDIVRRWL--MASGYDVAFVRNVTDIDDKILTKAAE-- 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 N S + F L L P+ +PRAT H+ QMI +Q +I G AY Sbjct: 57 ----ANRPWWEWVSTYERAFSHAYDMLGVLPPSVEPRATGHMTQMITYMQRLIDAGFAYP 112 Query: 148 ANNEIIFDTSSIP-----NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEP 202 A + FD ++ +YGS S + + + G + K++P DF LWK + P EP Sbjct: 113 AQGSVYFDVAAWSAADGSDYGSLSGNNLVDMEQGET--DNVGKRSPQDFALWKAAKPGEP 170 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W +PWG GRPGWH+ECSAMS+ YLG FDIHGGGLDL FPHHENEIAQ+ A + A Sbjct: 171 SWPTPWGDGRPGWHLECSAMSTWYLGPEFDIHGGGLDLQFPHHENEIAQAHAAG--DGFA 228 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPID 321 W+HN ++ + G KMSKS GN +++ E+++ + PV +R + HYR ++ Sbjct: 229 RYWMHNHWVTIAGEKMSKSLGNVLSVPEIVKLVR--------PVELRYYLGSAHYRSVLE 280 Query: 322 FTVQRLTEA-------EILLSKWP----QTSTSKGIIDPAVLSALYNDLNTVSAIQALHK 370 ++ L EA E + K Q G A A+ +D+ A+ +H Sbjct: 281 YSPDALQEAAQGYRRIETFVEKVDDLPGQPPVPVGEWTDAFAEAMNDDIGVPRALAEIHN 340 Query: 371 LAREST---------KNHDLLPIFNASAHILGIEVCKEHLNKNIS-------IAIEKLVQ 414 R + + A +LG + + S +A++ LVQ Sbjct: 341 TVRAGNSALAMRDYGEARRMAARVRAMTEVLGFDPLSDQWQDGESVRFDAPMVALDALVQ 400 Query: 415 ERL----ILLKMKKFSSADYIRKQLESKGFILED 444 E L I +K + +AD +R +L G I+ D Sbjct: 401 EELNRREIARSVKDWETADAVRDRLLEVGIIVTD 434 >gi|110667612|ref|YP_657423.1| cysteine--tRNA ligase [Haloquadratum walsbyi DSM 16790] gi|109625359|emb|CAJ51782.1| cysteine--tRNA ligase [Haloquadratum walsbyi DSM 16790] Length = 497 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 159/501 (31%), Positives = 241/501 (48%), Gaps = 79/501 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL + EF+ + +YVCG TV D AH+G+AR + D+++R L Y Sbjct: 3 LSVTNTLTGEREEFEP-RGDEVLLYVCGLTVSDHAHLGHARLWVHADIMHRWLEYQ--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+++KI+ R ++ + + + + T ++D L T PR Sbjct: 60 TVRHVENFTDVNEKIVARIGED----ELGETEATVADHFTNSVIQDMRGLNLKRATVYPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HIP +I L+++++ G+AYEAN + FD ++ YG S +++DE + T E+ Sbjct: 116 VSEHIPTIIDLVESLLDDGYAYEANGSVYFDVTAFDGYGDLSNQQLDEMEAQTPADERAE 175 Query: 185 KKNPADFILWK------------RSTPMEP-------GWESPWGRGRPGWHIECSAMSSH 225 K++PADF LWK RS ++ W +PWG GRPGWHIECSAMS Sbjct: 176 KRHPADFALWKAGGVKPDDLNEHRSEELDQLETTHGQTWNAPWGEGRPGWHIECSAMSMD 235 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 +L + DIH GG DL+FPHHENE+AQS A ++ A W+H G L G KMS S GN Sbjct: 236 HLDETLDIHVGGRDLMFPHHENEVAQSEAATD-QQFARYWLHVGLLQSAGDKMSSSIGNI 294 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------ 339 +TI + L+ VIR+ L T YR L EA +W + Sbjct: 295 LTIKQALDEHGVN-------VIRMFYLATAYRSEQTLGQSELAEA---TERWDRLNRAYE 344 Query: 340 -------TSTSKGIIDPAVL------------SALYNDLNTVSAIQALHKLAR------E 374 ++ + I++ L SA+ ND N AI +L KLA + Sbjct: 345 MAVDASNSTDAYAIVEDESLRSSVSETKSSFTSAMNNDFNVREAIASLLKLATSVNRHLD 404 Query: 375 STKNHDLLPIFNA--SAHILGIEVCKEHL------NKNISIA---IEKLVQERLILLKMK 423 S + +D ++ A + LG EVC + + IA IE ++ R + Sbjct: 405 SQERYDYRGLYMAIEAFEALGGEVCGLKFGDQPTGDGTVEIAEELIELILDVRETEREAG 464 Query: 424 KFSSADYIRKQLESKGFILED 444 + AD +R L+ G ++D Sbjct: 465 NYDRADELRDSLDEIGIEVQD 485 >gi|315227039|ref|ZP_07868826.1| cysteinyl-tRNA synthetase [Parascardovia denticolens DSM 10105] gi|315119489|gb|EFT82622.1| cysteinyl-tRNA synthetase [Parascardovia denticolens DSM 10105] Length = 557 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 168/554 (30%), Positives = 249/554 (44%), Gaps = 123/554 (22%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T K+ +F+ + P + MYVCG TV H+G+ R + FDV+ R E Sbjct: 23 VRIYDTAHHKVMDFRPVTPGKVTMYVCGATVQASPHVGHVRAGVSFDVIRRWFMKLGYE- 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKI+++A + + Q+F + L L PT++PR Sbjct: 82 -VTFVRNVTDIDDKILDKAAADGQNWWAR------AYYYEQEFSQAYRVLGVLTPTYEPR 134 Query: 125 ATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT H+ M+ L+Q +I GHAY + + FD S P+YG + ++ Q G Sbjct: 135 ATGHVTDMVDLVQRLIDRGHAYLIPNPDGSPSGNVYFDVPSWPHYGELTHQQAGTQATGD 194 Query: 178 RVP---------------EKYH----------KKNPADFILWKRS---TPMEPGWESPWG 209 +KY+ K +P DF LWK S P+ W +P+G Sbjct: 195 ESARIADAMGPSVDAAGEDKYNPADEADLSEEKHDPRDFALWKASKDSDPLTARWRTPFG 254 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWH+ECSAMS YLG FDIHGGGLDL FPHHENE+AQS A A+ W+H+ Sbjct: 255 TGRPGWHLECSAMSHRYLGDEFDIHGGGLDLRFPHHENEMAQSRAAGW--GFAHYWMHSA 312 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 ++ +G KMSKS GN ++I +L W ++R A+ YR ++++ Q + E Sbjct: 313 WVTQKGEKMSKSLGNGLSIPVVLSQCT----PW---MVRYALATVQYRSMLEWSQQTIAE 365 Query: 330 AEILLSKWP-----------QTSTSKGIIDPA------VLSALYNDLNTVSAIQALHKLA 372 A+ S+ Q S + PA ++A+ +D N +A+ A+ Sbjct: 366 AQSAYSRISNFLDHAGAAVGQPSRQEVTSYPADQLPQDFIAAMNDDFNVSTALAAVFSSI 425 Query: 373 R-ESTKNHDLLPIFNASAHILGIEVCKEHL------------------------------ 401 R +T +DL + S I + KE L Sbjct: 426 RYGNTTMNDLATLPEGSERDQAITLLKESLLLVRAMLDVFGLDPLDPQWLPGGDGFPAQA 485 Query: 402 -----------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +K + I + +R K K F+ AD IR L + G +ED Sbjct: 486 EDSAQADKTSGASSSQTSKVLDSLIRSQLDQRQAARKAKDFARADAIRNSLAAAGISIED 545 Query: 445 YKNPDNGQRMTRWK 458 G + + WK Sbjct: 546 ------GPQGSSWK 553 >gi|154148402|ref|YP_001406167.1| cysteinyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381] gi|166200141|sp|A7I0X6|SYC_CAMHC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|153804411|gb|ABS51418.1| cysteinyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381] Length = 468 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 239/473 (50%), Gaps = 52/473 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I++++ +K EF ++ +R+YVCGPTVYD AH+G+A+ I FD+L R L G K V Sbjct: 3 IFDSVVKKKLEFIPLENDFVRIYVCGPTVYDDAHLGHAKSAISFDLLRRTL-VALGFK-V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +V+N TDIDDKI+++ S+ IT +++ D L L +PRAT Sbjct: 61 KFVKNFTDIDDKILKKMEDSGKSLK------EITEFYISRYLDDMNALNVLRADIEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 I ++I ++ ++ +G AY+ + I FDTS +Y S S +K ++ + RV K Sbjct: 115 ECIDEIIEFVEELLDNGAAYKIQGDGIYFDTSKDSDYLSLSGKKDSDENIA-RVASNAQK 173 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-----VFDIHGGGLDL 240 K+ DF LWK E +++ +G GRPGWH EC M YL + DIH GG+DL Sbjct: 174 KDEKDFALWKFD---EKYYKAKFGCGRPGWHTECVVMIKKYLTDNKQKYLIDIHAGGMDL 230 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENE AQ CA+ + A W+HNGF+ + KMSKS GN I + L+ Sbjct: 231 LFPHHENEAAQCRCAEH-KNLAKYWMHNGFVQVNNEKMSKSLGNSFFIKDALKI------ 283 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIID----PAV 351 P +R ++ +HYR +++V L ++ L K + KGI D + Sbjct: 284 -VPGEALRFYLMSSHYRANFNYSVNDLFSSKKRLDKIYRLKKRLQGAKKGISDEKFKAEI 342 Query: 352 LSALYNDLNTV-----------SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH 400 L AL +DLNT SA + L K ++ K ++L + LGI E+ Sbjct: 343 LDALSDDLNTSLALSIVDSMVNSANERLDKNPKDKMKKGEILANLDFVKETLGILYTDEN 402 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 L ++ I L+ +R K K F+ AD IR++L + L D N Sbjct: 403 LYFQFGVSETKKAEISDLIAQRDAAKKEKNFALADEIREKLALQNITLMDTPN 455 >gi|262341324|ref|YP_003284179.1| cysteine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272661|gb|ACY40569.1| cysteine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 485 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 163/488 (33%), Positives = 243/488 (49%), Gaps = 57/488 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIYN+L K F+ I + +YVCGPTVY+ H+GN R I FDV++R L++ Sbjct: 10 RNNLKIYNSLTGKKELFKPIHEEYVGIYVCGPTVYNHLHLGNCRTFISFDVVFRYLKHL- 68 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V YVRNITD+ +DKI +++R E P+ I K T F Sbjct: 69 GYK-VRYVRNITDVGHLENEENDLEDKISKKSRIEGLE-PME-----IVQKYTLSFHNLL 121 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRR 168 L P +P AT HI + I +I+ +I AYE N + F+ + +YG S+ Sbjct: 122 NILNVQPPNIEPTATGHIIEQIDMIEKLIAKNLAYEINGSVYFNLKEYGKLYSYGILSKN 181 Query: 169 KIDEQKMGTRVPEKYHKKNPAD--FILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 KID K+ + + +KN F LWKR+ W SPWG+G PGWHIEC+AMS+ Sbjct: 182 KID--KLFNK-EFNFQEKNVIHKIFSLWKRAHSGHIMSWNSPWGKGFPGWHIECTAMSTK 238 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG FDIHGGG+DL FPHHE E+AQ+ A+ W+H L L G+KMSKS GNF Sbjct: 239 YLGVTFDIHGGGIDLKFPHHECELAQATAIYNKSYLAHYWMHTNMLTLNGKKMSKSTGNF 298 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG 345 + + ++++ F + + ++R +L +HYR +DF+ + L AE +K + Sbjct: 299 LILKDVIQ---FYKKPFSPSILRFFILQSHYRSVMDFSKEGLMNAEKGYNKIMKAINKLK 355 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH--------------- 390 DP + +N N I+ +K + L+ + H Sbjct: 356 NFDPNISKKNHNVFNVYDWIKDCYKAIDDDFNIPLLISHLFKATHVINSLNEIEKSYLLK 415 Query: 391 ---------ILGIEVCKEHLN---KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 ILG++ ++ N K + I +++L++ R K K + +D IR++L S Sbjct: 416 KYMTYFVFDILGLQDQEQKTNSSEKKLKILVKRLIKFRAEARKQKNWIVSDKIREELSSI 475 Query: 439 GFILEDYK 446 G D K Sbjct: 476 GIPFHDDK 483 >gi|313676536|ref|YP_004054532.1| cysteinyl-tRNA synthetase [Marivirga tractuosa DSM 4126] gi|312943234|gb|ADR22424.1| cysteinyl-tRNA synthetase [Marivirga tractuosa DSM 4126] Length = 495 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 140/347 (40%), Positives = 195/347 (56%), Gaps = 25/347 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K++KI N+L R+ F+ I+P + MYVCGPTVY AH+GN R + FDV+ R LR+ Sbjct: 1 MDKELKIQNSLTRQKEIFKPINPPFVGMYVCGPTVYSDAHMGNVRTFMSFDVINRYLRHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ +DKI ++A+ E+ P+ I + F + Sbjct: 61 -GYK-VRYVRNITDVGHLVDDADDGEDKIGKKAKLENVE-PME-----IVQRYANGFHRV 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L P +P AT HI + I + + ++ +G AYE N I FD S YG S Sbjct: 113 MDLFNILEPDIEPTATGHIVEQIEINKKLLENGWAYEKNGSIYFDVSKYNEAHEYGILSG 172 Query: 168 RKIDEQKMGTRVPE-KYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSH 225 RKI++ + TR + + KKNP DF LWK+++ W SPW G PGWH+EC+ MS+ Sbjct: 173 RKIEDLQSNTRTLDGQDDKKNPLDFALWKKASDEHIMRWPSPWSDGFPGWHLECTVMSTK 232 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 YLG+ FDIHGGG+DL FPHHE EIAQ+ A+ + N WIH L + G+KMSKS GN Sbjct: 233 YLGETFDIHGGGMDLKFPHHECEIAQAVGANG-KTPVNYWIHTNMLTVNGQKMSKSLGNS 291 Query: 286 ITINELLE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +L+ + + +R M+ THY +DF+ + L A+ Sbjct: 292 FLPTQLVSGNHDMLEQGYTPMTVRFFMMQTHYSSTLDFSNEALKAAQ 338 >gi|156543451|ref|XP_001601176.1| PREDICTED: similar to Albumin [Nasonia vitripennis] Length = 515 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 199/367 (54%), Gaps = 46/367 (12%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y+CGPTVYD AHIG+A + FD++ R+L ++ + V V +TDIDDKII+RA + Sbjct: 60 YMCGPTVYDSAHIGHACTYVKFDIIRRILSEFF-DINVVLVMGLTDIDDKIIKRANESGQ 118 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 S IT K ++F+ D L L P + TN+IPQ++ ++ I+ AY Sbjct: 119 SW------QSITQKYEKEFISDMDSLNVLKPFATCKVTNYIPQIVEFVEKIVNKNGAYVG 172 Query: 149 -NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + + FDTS+ NYG K+D + P+K ++ DF LWK S EP WESP Sbjct: 173 KDGSVYFDTSNYRNYG-----KLDTPQAQEPHPDK---RSSLDFALWKASKENEPYWESP 224 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WGRGRPGWHIECSA++S LG DIH GG+DL FPHHENE AQSCC + N W+H Sbjct: 225 WGRGRPGWHIECSAIASTVLGSNIDIHSGGMDLAFPHHENEEAQSCCYHEKNQWINYWLH 284 Query: 268 NGFLNLEG-RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT--- 323 G L+LEG KMSKS N ++I LL+T+ A R+ L++ YR+ + F+ Sbjct: 285 TGHLHLEGDTKMSKSLQNTVSIPSLLKTQ-------TANQFRMLCLLSDYRKNVIFSKTL 337 Query: 324 ----VQRLTEAEILLSKWPQTSTSK---GIIDPAVL------------SALYNDLNTVSA 364 + L + E S + K G ++ L SAL +D +T A Sbjct: 338 VHTAITTLKKIEFFTSDCNEYICGKLDCGNVNSVELLKCLEDTRQEVNSALADDFDTAKA 397 Query: 365 IQALHKL 371 + A+ KL Sbjct: 398 MHAILKL 404 >gi|313126857|ref|YP_004037127.1| cysteinyl-tRNA synthetase [Halogeometricum borinquense DSM 11551] gi|312293222|gb|ADQ67682.1| cysteinyl-tRNA synthetase [Halogeometricum borinquense DSM 11551] Length = 495 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 157/503 (31%), Positives = 236/503 (46%), Gaps = 77/503 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL + EF+ D ++ +YVCG TV D AH+G+AR + DV++R L + Sbjct: 3 LSVTNTLTGEREEFEPQDDDDVLLYVCGLTVSDDAHLGHARLWMHADVMHRWLEHEG--Y 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+++KI R + D + T ++D L PR Sbjct: 61 TVHHVENFTDVNEKIAARIGDDELGQSEPD----VARHFTDHVIRDMRGLNLKRAEVYPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+PQ+I LI+ + +G+AYE+N + FD ++ +YG S +KI+E + E+ Sbjct: 117 VSEHVPQIIDLIETLTENGYAYESNGSVYFDVTAFEDYGKLSNQKIEEMEAQGEADERAE 176 Query: 185 KKNPADFILWKRST---------------PMEPG----WESPWGRGRPGWHIECSAMSSH 225 K++PADF LWK P+E WESPWG GRPGWHIECSAMS Sbjct: 177 KRHPADFALWKAGAVSPDAVAEHRPEELDPIEDACGETWESPWGEGRPGWHIECSAMSMT 236 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 +LG DIH GG DL+FPHHENE+AQS A + A W+H G L +E KMS S GNF Sbjct: 237 HLGDTIDIHVGGRDLVFPHHENEVAQSEAA-TGQTFARYWLHVGLLQMEDDKMSSSLGNF 295 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------ 339 T+++ L+ +FG VIR L T Y F+ + EAE +W + Sbjct: 296 FTVSDALD--EFG-----VDVIRTFYLSTGYGAEQTFSDSAMAEAE---ERWDRLERAYE 345 Query: 340 ------------TSTSKGIIDPAVLS-------ALYNDLNTVSAIQALHKLAR------E 374 S + A+ + A+ +D N A+ AL +LAR Sbjct: 346 TAIEACDSPDAYASVEDADLREAIETTQTDFQKAMNDDFNVREAMAALIELARAVNTHVN 405 Query: 375 STKNHDLLPIFNA-------SAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKK 424 +D + A + G+ ++ IA + L+ R + Sbjct: 406 DADEYDYRGLREAIETFEDLGGDVFGLSFGDAADGGDVEIAEDLVSLLLNVREAEREAGN 465 Query: 425 FSSADYIRKQLESKGFILEDYKN 447 + AD +R +L++ G + D ++ Sbjct: 466 YERADELRDELDALGVEVHDSED 488 >gi|225351179|ref|ZP_03742202.1| hypothetical protein BIFPSEUDO_02769 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158635|gb|EEG71877.1| hypothetical protein BIFPSEUDO_02769 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 557 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 172/526 (32%), Positives = 249/526 (47%), Gaps = 103/526 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T ++ F I P + MYVCG TV HIG+ R + FDV+ R G K Sbjct: 39 LKLYDTASHAVSNFTPIKPGQVGMYVCGATVQSSPHIGHIRAAVAFDVVRRWFERL-GYK 97 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKI+++A I ++F + L PT++PR Sbjct: 98 -VTFVRNVTDIDDKILDKAAAAGQQWWERAYIY------EREFTEAYNTLGVEPPTYEPR 150 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-------IIFDTSSIPNYGSFSRRKIDE----- 172 AT H+ MI LI+ II +GH Y +E + FD +S P+YG + +K Sbjct: 151 ATGHMIDMIDLIKQIIDNGHGYVVTDENGNPTGNVYFDVASWPHYGELTHQKQTAVADAA 210 Query: 173 ----QKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRG 211 MG V +KY+ K +P DF LWK S P++ W +P+G G Sbjct: 211 SEVADAMGPSVDNTGNDKYNPVDPADMSEDKHDPRDFALWKAPKDSDPLDARWNTPFGTG 270 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ ++ Sbjct: 271 RPGWHIECSAMSHRYLKDMFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSAWV 328 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q LTEA+ Sbjct: 329 TAKGEKMSKSLGNGLSVPAVLAENS----AW---VVRYALGSVQYRSMLEWSDQTLTEAQ 381 Query: 332 ILL------------------SKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQA------ 367 S+ S S + ++A+ +D+N A A Sbjct: 382 SAYDRVSNFIERAGAAVGGQPSREEIVSVSADELPADFVAAMNDDINVSGASAAIFTAIR 441 Query: 368 -----LHKLA----RESTKNHDLLPIFNASAHI--LGIEVCKE--------------HLN 402 L KLA + K+ + N A + LG++ E + Sbjct: 442 SGNTLLSKLADRVDSDVAKDEVRAVLVNVRAMLDTLGLDPLAEPWVSEGAAGGTAGAGAD 501 Query: 403 KNISIAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFILED 444 A+++LV +ER K K F+ AD IR L + G +ED Sbjct: 502 SAEHTALDRLVSEQLEERAEARKAKDFARADAIRDALGAAGIAIED 547 >gi|269839611|ref|YP_003324303.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269791341|gb|ACZ43481.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 785 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 241/484 (49%), Gaps = 55/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +++YNTL R++ E ++P IRMY CGPTVY + HIGN R D + R LLR Y Sbjct: 1 MRLYNTLTRRVEEVVPVEPGRIRMYTCGPTVYRYIHIGNLRSFCTADWIRRALLREGYE- 59 Query: 64 KCVTYVRNITDI-----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 V +V+NITD+ +DK+ AR+ + I T+ F++D Sbjct: 60 --VIHVKNITDVGHMRQELLDQGEDKLEAEARR------VGRTPGEIAEFYTRAFMRDEA 111 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 R+ L + PRAT H+ +MI +++ + G+AY A + FD + +P YG S + E Sbjct: 112 RMNILPASVFPRATQHVGEMIEIVRELERQGYAYRAGGNVYFDVARLPQYGQLSGNSLPE 171 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ K++P DF LWK + P W+SPWGRG PGWHIEC+AM+ YLG Sbjct: 172 LT-SSQEDATADKRSPLDFALWKEAEPGRLMAWDSPWGRGFPGWHIECTAMAIKYLGTEI 230 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG+D IFPHHENE AQS A + W+H L +G KMSKS N T++++ Sbjct: 231 DIHTGGVDNIFPHHENERAQS-EAYVGHRWVRHWVHTQHLLTDGLKMSKSMSNDYTLDDI 289 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---KGIID 348 + R + +R HYR ++FT + L A+ L + + + + + Sbjct: 290 V------ARGFEPLALRYLFTTAHYRTRLNFTFRALAGAQTSLRRLRMAALAARDEAVAP 343 Query: 349 P----------AVLSALYNDLNTVSAIQALHKLARES----TKNHDLLPIFNASAHILGI 394 P A +L +DLN +A+ + + R S + LL F+ +LG+ Sbjct: 344 PDEEAMRPWREAFDRSLRDDLNLPAAMAVVWDVVRRSGLGPAERAALLAEFD---EVLGL 400 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKK----FSSADYIRKQLESKGFILEDYKNPDN 450 +V E + + + + V+E L L + ++ AD +R LE++G L D + Sbjct: 401 DVFAEP-DSGLLLEPRQDVRELLALRAEVRARGDYALADALRSDLEARGVELRDTRQGTR 459 Query: 451 GQRM 454 R+ Sbjct: 460 AYRL 463 >gi|320355263|ref|YP_004196602.1| cysteine synthase [Desulfobulbus propionicus DSM 2032] gi|320123765|gb|ADW19311.1| cysteine synthase [Desulfobulbus propionicus DSM 2032] Length = 775 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 244/475 (51%), Gaps = 54/475 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYG 62 +++++NT+ RK FQ I + + +Y CGPT + +I + R +IV D++ R LL Y Sbjct: 306 QLRLFNTMTRKKEVFQPIRDNRVTLYACGPTAAESPNIAHCRRLIVADLINRSLLAQGY- 364 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V N TD+DD I A I + T + +F + L T Sbjct: 365 --AVELYMNFTDLDDNTITGA------IDAGADLREFTGRYIDEFKQAIEALNVQQATGY 416 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-E 181 P A+ H+ MI + ++I G+AYE I FD S +YG S + + K+G V + Sbjct: 417 PLASEHVGHMIEIAHDLIHKGYAYEKLGSIYFDISKFKHYGRLSGIDLSKIKIGQTVDLD 476 Query: 182 KYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 Y K NP DF L KRST E +E+ WG RPGWHIECSAMS++YLG+ DIH Sbjct: 477 NYEKDNPRDFTLLKRSTLAELKKGIFYETDWGNIRPGWHIECSAMSTNYLGETIDIHTAS 536 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENEIA + A + AN W+H+G L ++GRKM+K GN +T+ E+L+ + + Sbjct: 537 QDLLFPHHENEIAIA-EALTGKPLANYWLHSGQLLMDGRKMAKETGNVVTLREVLD-RGY 594 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL----- 352 GGR +R +L HYR+P+ F+ +RL A L + + T K + PA L Sbjct: 595 GGRE-----LRFMLLGVHYRKPLLFSFKRLNAARTALRRIDEY-TRKLLCLPAGLPHPEL 648 Query: 353 ------------SALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASA 389 A+ +DLN AI AL +++ + +D+L Sbjct: 649 ASYVSELEQRFHDAINDDLNISGAIGALFNFIKQTNPVVQARQLDRDQKNDVLEALRMVN 708 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + EH ++ I++L+++R ++K +++AD R++L KG + D Sbjct: 709 TVLGV-LRLEHC--PLTPEIDRLIRQRERARQLKDWTAADSAREELLRKGVTIVD 760 >gi|78061440|ref|YP_371348.1| cysteinyl-tRNA synthetase [Burkholderia sp. 383] gi|109894878|sp|Q39A07|SYC1_BURS3 RecName: Full=Cysteinyl-tRNA synthetase 1; AltName: Full=Cysteine--tRNA ligase 1; Short=CysRS 1 gi|77969325|gb|ABB10704.1| cysteinyl-tRNA synthetase [Burkholderia sp. 383] Length = 470 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 231/467 (49%), Gaps = 31/467 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLL-RYYYGE 63 + +Y+T R + F I + MY CGPTVYD AHIGN R + D+L R+L R Y Sbjct: 3 LALYDTWSRTVRPFTPIRAGQVGMYGCGPTVYDDAHIGNLRTYVFEDLLRRVLERNGY-- 60 Query: 64 KCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 V +V NITD+ D + E S ++ I + T+ FV+D L L P Sbjct: 61 -AVRHVVNITDVGHLTSDADEGEDKMEKGSRRTGESAWAIARRYTEAFVRDWHALNLLEP 119 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 T RAT+HI + I I+ + G+ Y ++ + FDTS +YG +R + G RV Sbjct: 120 TIWCRATDHIAEQIAFIETLDRAGYVYRTDDGLYFDTSRQDDYGYLARLDRAGLQAGKRV 179 Query: 180 PEKYHKKNPADFILWKRS---TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K++ DF LWK S + W+SPWGRG PGWHIECSAMS+ YLG +FDIH G Sbjct: 180 ALG-GKRSITDFALWKFSPADVQRQMEWDSPWGRGFPGWHIECSAMSAKYLGTLFDIHCG 238 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETK 295 G D I HH NEIAQ+ A + AN W+H FL L+ KMSKS+G+F+ + L Sbjct: 239 GEDHIAVHHSNEIAQTRAAHGTQ-LANYWMHGHFLTLDVHTKMSKSSGDFVRLQTLQR-- 295 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIID 348 R R L HYR + FT + L A+ L++ WP Sbjct: 296 ----RGVDPLAYRYLCLTAHYRSKLHFTWESLDAAQTALNRLRHLYIGWPDGGRVDADFA 351 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH-LNKNISI 407 + + DLN A+ L L R + L ++ +LG+ + + + ++ Sbjct: 352 ARFDAEVNEDLNLPRALAVLWDLVRSNLPPATLKATVDSFDMVLGLGLREWRPVAVDVPE 411 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + L+ ER K ++ AD IR+ L ++G+ +ED P+ GQR+ Sbjct: 412 HVRALLGERARARAEKDWAQADRIREALSAEGWRVED--TPE-GQRL 455 >gi|312381823|gb|EFR27474.1| hypothetical protein AND_05800 [Anopheles darlingi] Length = 1017 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/448 (34%), Positives = 223/448 (49%), Gaps = 63/448 (14%) Query: 20 AIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77 +I+P + Y CGPTVYD AHIG+A + D+L R+L++++ VT + NITDIDD Sbjct: 521 SINPQKPFLSFYTCGPTVYDSAHIGHASCYVRLDILQRILKHHFQLPLVTAM-NITDIDD 579 Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KII RA + + K +F D T L P + R T HIP ++ +Q Sbjct: 580 KIIARANERGMDW------QALARKYEAEFWNDLTNLNVQPPDVKLRVTEHIPAIVRFVQ 633 Query: 138 NIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR 196 +I G+AY A++ + F+TS YG + ++ + E K++P+DF LWK Sbjct: 634 TLIDKGYAYRADDGSVYFETSKYERYGKLQKVILEPAQ------ESRFKRHPSDFALWKA 687 Query: 197 STPMEPGWESPW-----GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 S P EP W GRPGWHIECS M+SH GK D H GGLDL FPHHENE Q Sbjct: 688 SKPGEPAWSGEGEAVSVTSGRPGWHIECSTMASHVFGKRLDFHAGGLDLRFPHHENEETQ 747 Query: 252 SCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 SCC + WIH G L+LEG+ KMSKS N I+I+ELL+ A R+ Sbjct: 748 SCCYHDVPDWVTHWIHTGQLHLEGQTHKMSKSLKNTISISELLQEHT-------ADEFRM 800 Query: 310 AMLMTHYREPIDFTVQRLTEAEILLSKW---------------PQT----STSKGIID-- 348 L++HYR I++ + + A +L K+ PQT S+ + + D Sbjct: 801 LCLLSHYRSVIEYGSESMATASNVLRKFISFFQDSKAYVDGLKPQTYGNGSSEENLFDCL 860 Query: 349 ----PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH--ILGIEVCKEHLN 402 V + L ND NT +++ AL L + K + AH ++G N Sbjct: 861 AKTRNIVEACLTNDFNTANSVLALSDLISTAQKAINGNEQLGDGAHPRLIGAS------N 914 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADY 430 +A+ + V+E+L+ ++ F + + Sbjct: 915 IGAVLAVTRYVREQLLSYGLQSFERSTH 942 >gi|150398926|ref|YP_001322693.1| cysteinyl-tRNA synthetase [Methanococcus vannielii SB] gi|150011629|gb|ABR54081.1| cysteinyl-tRNA synthetase [Methanococcus vannielii SB] Length = 459 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 241/475 (50%), Gaps = 50/475 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL +K F + ++++VCGPT Y +HIG+AR I FD + R L+Y Sbjct: 2 LQIYNTLSKKEELFLPNHQNIVKLFVCGPTTYAESHIGHARTYIAFDAIVRYLKYL--GY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NITDIDDKII++A+ + + P +++ +++++D L R Sbjct: 60 TVFYLQNITDIDDKIIDKAKIQSKN-P-----DLLSKHYEKKYLEDMENLGVNNVNFYAR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H ++I ++ +I G AYE N + F+ S +G S + I+E + P+ Sbjct: 114 ATEHTFEIINQVKILIEKGFAYETENGVYFEVSKFQEFGKLSNQNIEELNVHRVNPDGL- 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+ DF+LWK+ + +P W+SPWG GRPGWHIE +A++ Y G +DIHGGGLDLIFPH Sbjct: 173 KKDVKDFVLWKKVSE-KPCWDSPWGFGRPGWHIEDTAITEKYFGPKYDIHGGGLDLIFPH 231 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE EIAQ + W+H GFLN+ G KMSKS NFITI E+LE + A Sbjct: 232 HEAEIAQMESISGEKPMVKYWMHTGFLNVNGTKMSKSLSNFITIKEILE-------KYNA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 R +L THYR PIDF+ + L ++ + S P + Sbjct: 285 LEFRFFVLSTHYRSPIDFSSENLEASKKSFERITNFIKSTEFFIPILEIEHENDDLVEQN 344 Query: 352 --------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-----------AHIL 392 A+ ND NT AI A+ R K+ + I S +L Sbjct: 345 IKFTKEKFFDAMNNDFNTPLAISAIFGYVRFINKHLNDKNISKKSLLKSSELIFELMQVL 404 Query: 393 GIEVCKEHLN-KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 G E+ N KN ++ ++ R L + K++ +DYIR +L ++D K Sbjct: 405 GFEIKTNLKNDKNAEELLDLILNVRSKLREKKEWEISDYIRNRLNEINIKIDDIK 459 >gi|114052012|ref|NP_001039409.1| cysteinyl-tRNA synthetase, mitochondrial precursor [Bos taurus] gi|115502846|sp|Q2KIF8|SYCM_BOVIN RecName: Full=Cysteinyl-tRNA synthetase, mitochondrial; AltName: Full=Cysteine--tRNA ligase; Short=CysRS; Flags: Precursor gi|86826764|gb|AAI12655.1| Cysteinyl-tRNA synthetase 2, mitochondrial (putative) [Bos taurus] Length = 555 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 160/497 (32%), Positives = 238/497 (47%), Gaps = 67/497 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 44 VKVYNSLTRRKDPLIVSRADAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILSRVFG-- 101 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V V ITD+DDKII RA + ++ + + + + F +D L L PT Sbjct: 102 CTVVMVMGITDVDDKIIRRANE------MSVSPASLARLYEEDFKQDMAALKVLPPTAYL 155 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T H+PQ++ I+ +I +GHAY A + FD S + YG + +G P Sbjct: 156 RVTEHVPQIVAFIERLIANGHAYCTAKGNVYFDLQSRGDRYGKLV--GVAPGPVGE--PV 211 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P EP W SPWG GRPGWHIECS ++S G DIH GG+DL Sbjct: 212 DSDKRHTSDFALWKAAKPQEPFWGSPWGDGRPGWHIECSTIASLVFGSQLDIHSGGVDLA 271 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + + N ++H+G L+++ G KMSKS N++TI + L Sbjct: 272 FPHHENEIAQCEAFHQCPQWGNYFLHSGHLHVKGGGEKMSKSLKNYVTIKDFL------- 324 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------- 336 RS V RL L + YR ID++ L EA LL Sbjct: 325 RSTSPDVFRLFCLRSSYRSAIDYSEGALLEARSLLRATAAFVEDARAYLRGQLAGGPIQE 384 Query: 337 ---WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL---PIFNASAH 390 W + +K AV +AL +D +TV A+ A+ L + P S Sbjct: 385 DVLWERLGRTKA----AVQAALADDFDTVRAVDAVMDLVHHGNRQLKAASEEPRGPRSPA 440 Query: 391 ILGIEVCK-EHLNKNISIAIEKLVQERLILLKMKKFSS-----ADYIRKQLESKGFILED 444 +LG V EH + + +++ ER + ++ + +R +L+ + F L Sbjct: 441 VLGAVVASVEHFFETVGVSL----AERQCVPGAGSPAALYSLVEELVRFRLKVRQFALAS 496 Query: 445 YKNPDNGQRMTRWKQKP 461 + P +R +++P Sbjct: 497 GEAPGEARRQRLLERQP 513 >gi|303390212|ref|XP_003073337.1| cysteinyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506] gi|303302483|gb|ADM11977.1| cysteinyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506] Length = 482 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 174/294 (59%), Gaps = 8/294 (2%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +K+YN++ + F + ++MY+CGPTVYD HIG+AR ++FDV+ R+L Y Sbjct: 3 MDRTLKLYNSISKTSEVFIPRRDNEVKMYICGPTVYDSPHIGHARTYVMFDVIRRVLSDY 62 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V +V NITDIDDKII RA + S+ +T K T++F +D L P+ Sbjct: 63 L-RYNVNFVMNITDIDDKIIVRANETGVSM------DEVTRKYTEEFFEDMKALNVRPPS 115 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 T+++ ++I I+ + ++G AYE+ + F+ + + + K ++ + T Sbjct: 116 FVTFVTSYVDKIIKFIEKLEVNGFAYESEGSVYFNLNKYQDKHGYPLFK-NKDGINTEGD 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K+NP DF+LWK+S EP +ES WG GRPGWHIECS MSS LG+ DIH GG+DL Sbjct: 175 ENKDKRNPCDFVLWKKSKENEPRYESKWGYGRPGWHIECSVMSSDILGEDLDIHAGGIDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHHENEIAQ E ++H G LN++G KMSKS NF TI E LE Sbjct: 235 AFPHHENEIAQCQAYFMKEPWVKCFLHTGHLNIDGLKMSKSLKNFTTIKEALEV 288 >gi|23464902|ref|NP_695505.1| cysteinyl-tRNA synthetase [Bifidobacterium longum NCC2705] gi|61216350|sp|Q8G7G5|SYC_BIFLO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|23325493|gb|AAN24141.1| cysteinyl-tRNA synthetase 1 [Bifidobacterium longum NCC2705] Length = 546 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 174/548 (31%), Positives = 253/548 (46%), Gaps = 120/548 (21%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 29 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 88 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+ +A ++F + L L PT Sbjct: 89 ---KVTFVRNVTDIDDKILVKAAA------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 139 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK----I 170 +PRAT H+ MI LIQ I+ +GH Y + + FD +S P+YG + +K + Sbjct: 140 EPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFDVASWPHYGELTHQKQTSEV 199 Query: 171 DE-----QKMGTRV----PEKYH----------KKNPADFILWKR---STPMEPGWESPW 208 DE +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 200 DEAAAVADRMGPSVDATGADKYNPVDPADASPDKHDPRDFALWKAPKDTDPEDARWSTPF 259 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+C A +A W+H+ Sbjct: 260 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTCAAGY--PSAARWMHS 317 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 318 AWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALV 370 Query: 329 EAE--------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQA--- 367 EA+ + L P + S + ++A+ +D+N A A Sbjct: 371 EAQAAYDRVSNFIERAGVALGGQPSREEVAAVSADDLPADFVAAMNDDVNVSGATAAIFT 430 Query: 368 --------LHKLA------------RES---------TKNHDLL--PIFNASAHILGIEV 396 L +LA RE+ T D L P +A G Sbjct: 431 AIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVSAGGAADGTAE 490 Query: 397 CKEHLNKNISIAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 EH A+E L+ E+L K K F+ AD IR L G +ED G Sbjct: 491 SPEH------AALEALIAEQLNARAEARKAKDFAKADQIRDALTEAGIAIED------GP 538 Query: 453 RMTRWKQK 460 + + W K Sbjct: 539 QGSTWSLK 546 >gi|57167801|ref|ZP_00366941.1| cysteinyl-tRNA synthetase [Campylobacter coli RM2228] gi|57020923|gb|EAL57587.1| cysteinyl-tRNA synthetase [Campylobacter coli RM2228] Length = 460 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 228/458 (49%), Gaps = 55/458 (12%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D N+ +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDQDNVNIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LSLGYR-VQFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ + S+ N+ + + + +D L L P +PRAT +I M+ LI + Sbjct: 72 KKMSESGKSL--NELVEFYIA----NYERDMKALNVLEPDFKPRATYYIEPMLDLIHKLS 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 +G Y + + FDTS +Y S S R +E +R+ + K+N +DF+LWK Sbjct: 126 KNGFTYTLEDGVYFDTSKDEDYLSLSHRNTEENV--SRLSNEVEKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E ++S +G+GRPGWH EC AM G DIH GG+DL+FPHHENE AQ CA + Sbjct: 181 ENFYDSEFGKGRPGWHTECVAMIDSIFGDTLDIHAGGVDLLFPHHENEAAQCRCACK-RT 239 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A IW+HNGF+ + G KMSKS N + + L K F G + +R +L +HYR Sbjct: 240 LAKIWLHNGFVKINGEKMSKSLNNSFFLKDAL--KDFMGEA-----LRFYLLSSHYRAHF 292 Query: 321 DFTVQRLTEAEILLSKWPQTSTSKGI-----------------IDPAVLSALYNDLNTVS 363 ++++ L + L K+ + + I +L L +DLN Sbjct: 293 NYSLDDLENVKKRLDKFYRLKKRLAVGKTPDFGILNDIEIHSNIAKQILEVLSDDLNISK 352 Query: 364 AIQALHKL-------ARESTKNHDL----LPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L + + +KN +L + A I G E+L K + Sbjct: 353 ALALLDEFITNANLELDQQSKNKELKQKIKEALSELAKIFGFGFMDENLYFQWGVAKELK 412 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I+ + +R K K F+ AD IR+ L G L+D Sbjct: 413 EKIQDQILQRNEAKKNKDFAKADQIREDLLKLGIALQD 450 >gi|269861043|ref|XP_002650237.1| cysteinyl-tRNA synthetase [Enterocytozoon bieneusi H348] gi|220066327|gb|EED43813.1| cysteinyl-tRNA synthetase [Enterocytozoon bieneusi H348] Length = 500 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 150/380 (39%), Positives = 217/380 (57%), Gaps = 24/380 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +Y+++ +K EF DP+N++MYVCGPTVYD HIG+AR I FD++ ++L Y+ Sbjct: 4 KSILLYDSISKKKIEFIPDDPTNVKMYVCGPTVYDSPHIGHARTYISFDIIRKILENYF- 62 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VT+V NITDIDDKII R+++++ PI +S I K +F D +L P Sbjct: 63 EYNVTFVMNITDIDDKIIIRSKEKNLD-PI--QLSQIYEK---EFFDDMDKLKVKRPDFI 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS---IPNYGSFSRRKIDEQKMGTRV 179 R T HIPQ+I IQ + +G Y +N + FD I Y I++ + T V Sbjct: 117 TRVTEHIPQIINFIQKLENNGLTYVSNGSVYFDLKKYKKIFKYNVLRLSGIEQHLIDTTV 176 Query: 180 PE--KYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 KK+ DF LWK E + SPWG GRPGWHIECS MS+H G DIHGG Sbjct: 177 KSIISTEKKSLDDFALWKNVVNKDELKFHSPWGEGRPGWHIECSVMSTHIFGSKLDIHGG 236 Query: 237 GLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 G+DL+FPHHENEIAQ C T ++H G LN++GRKMSKS NF+TI+E++ Sbjct: 237 GIDLMFPHHENEIAQ--CQGYFNDTWVKYFLHTGHLNIDGRKMSKSLKNFLTISEII--- 291 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-WPQTSTSKGIIDPAVLSA 354 ++ IR+ L H+ P++++ ++L A++ K + ST++ II L+ Sbjct: 292 ----NNYSGITIRILFLQHHWNSPMNYSEEQLKRADVTRKKIFNFISTAESIITQQKLNN 347 Query: 355 LYNDLNTVSAIQALHKLARE 374 + N + I+++ + +E Sbjct: 348 INNFQKSNPYIRSMTSVDKE 367 >gi|118475287|ref|YP_891963.1| cysteinyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40] gi|166200140|sp|A0RP30|SYC_CAMFF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118414513|gb|ABK82933.1| cysteinyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40] Length = 459 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 231/459 (50%), Gaps = 51/459 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+++ ++ EF+ I +YVCGPTVYD AH+G+A+ I FD+L R L+ G K V Sbjct: 3 IYDSILKQKVEFKPIREYEANIYVCGPTVYDDAHLGHAKSSISFDLLRRTLK-SLGYK-V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +++N TDIDDKI+++ Q S+ IT+ ++ D L +P+AT Sbjct: 61 KFIKNFTDIDDKILKKMSQTGKSLE------DITNHYISRYKADMYALNVADADIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 + +I I + +G AY+ ++ I FDTS Y S S RK ++ + RV K KK Sbjct: 115 TSLTSIINYITTLFENGWAYKIDDGIYFDTSKDDKYLSLSGRK--DENLIARVASKDEKK 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGKV---FDIHGGGLDLIF 242 + DF+LWK E ++SP+GRGRPGWH EC AM H+ G DIH GG DL+F Sbjct: 173 DEKDFVLWKFD---ENWYDSPFGRGRPGWHSECVAMIKDHFCGSCEFEIDIHAGGADLLF 229 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQ CA + A W+HNGF+ + KMSKS GN I + LE Sbjct: 230 PHHENEAAQCRCAYN-KNLAKYWMHNGFVQVNNEKMSKSLGNSFFIKDALELV------- 281 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDPAVLS 353 P +R ++ +HYR ++ + L ++ L K +TS + +L Sbjct: 282 PGEALRFYLMSSHYRANFNYDIDDLKSSKKRLDKIYRLKKRLIGVKTSKTDAKFKKDILD 341 Query: 354 ALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFNAS----AHILGIEVCKEH-- 400 A+ +DLN A+ L ++ + KN D I ++ +LGI E Sbjct: 342 AMSDDLNISVALAILDEMVNNANAKLDNEPKNRDFKQILVSNLEFVKELLGILYIDEFKW 401 Query: 401 ----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 ++ ++ I L+ +R + K K F AD IR +L Sbjct: 402 FQWGVDDSLKQEISVLIDQRNMAKKDKNFILADQIRDKL 440 >gi|305432177|ref|ZP_07401341.1| cysteine--tRNA ligase [Campylobacter coli JV20] gi|304444720|gb|EFM37369.1| cysteine--tRNA ligase [Campylobacter coli JV20] Length = 457 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 228/458 (49%), Gaps = 55/458 (12%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D N+ +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 11 LDQDNVNIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LSLGYR-VQFARNYTDIDDKIL 68 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ + S+ N+ + + + +D L L P +PRAT +I M+ LI + Sbjct: 69 KKMSESGKSL--NELVEFYIA----NYERDMKALNVLEPDFKPRATYYIEPMLDLIHKLS 122 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 +G Y + + FDTS +Y S S R +E +R+ + K+N +DF+LWK Sbjct: 123 KNGFTYTLEDGVYFDTSKDEDYLSLSHRNTEENV--SRLSNEVEKRNESDFVLWKFD--- 177 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 E ++S +G+GRPGWH EC AM G DIH GG+DL+FPHHENE AQ CA + Sbjct: 178 ENFYDSEFGKGRPGWHTECVAMIDSIFGDTLDIHAGGVDLLFPHHENEAAQCRCACK-RT 236 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A IW+HNGF+ + G KMSKS N + + L K F G + +R +L +HYR Sbjct: 237 LAKIWLHNGFVKINGEKMSKSLNNSFFLKDAL--KDFMGEA-----LRFYLLSSHYRAHF 289 Query: 321 DFTVQRLTEAEILLSKWPQTSTSKGI-----------------IDPAVLSALYNDLNTVS 363 ++++ L + L K+ + + I +L L +DLN Sbjct: 290 NYSLDDLENVKKRLDKFYRLKKRLAVGKTPDFGILNDIEIHSNIAKQILEVLSDDLNISK 349 Query: 364 AIQALHKL-------ARESTKNHDL----LPIFNASAHILGIEVCKEHL------NKNIS 406 A+ L + + +KN +L + A I G E+L K + Sbjct: 350 ALALLDEFITNANLELDQQSKNKELKQKIKEALSELAKIFGFGFMDENLYFQWGVAKELK 409 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I+ + +R K K F+ AD IR+ L G L+D Sbjct: 410 EKIQDQILQRNEAKKNKDFAKADQIREDLLKLGIALQD 447 >gi|291542167|emb|CBL15277.1| cysteinyl-tRNA synthetase [Ruminococcus bromii L2-63] Length = 468 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 232/474 (48%), Gaps = 49/474 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+L + EF P + MY CGPTVY +AHIGN R I+ DVL + LR+ + V Sbjct: 3 LYNSLGQTKQEFVPHTPGKVNMYTCGPTVYHYAHIGNLRTYIMEDVLEKYLRFSGYD--V 60 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 V NITD+ +DK++ A++EH ++ I T F D +L Sbjct: 61 NRVMNITDVGHLSSDADTGEDKMLSGAKREHKTV------MEIAKFYTDAFFADCEKLNI 114 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P ATN I I +I ++ G+AY A + FDTS + NY F D+ +G Sbjct: 115 KRPDVVEPATNCIDDFINMISVLLEKGYAYIAGGNVYFDTSKLDNYYVFGNMNEDDLAVG 174 Query: 177 TR--VPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R V E +K+N ADF+LW + E WESPWG G PGWHIECS +S + G+ Sbjct: 175 VRDSVEEDENKRNKADFVLWFTKSKFDSQELKWESPWGVGYPGWHIECSCISYKHCGEYL 234 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG+D FPHH NEIAQS A K W H LN KMSKS G F+T++ L Sbjct: 235 DIHCGGIDNAFPHHTNEIAQS-EAFLGHKWCPYWFHVLHLNDARGKMSKSKGGFLTVS-L 292 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------PQ 339 LE K + V R+ L +HYR+P+ F+ L +K P Sbjct: 293 LEEKGYN-----PLVYRMFCLQSHYRKPLTFSYDNLDNTATAYNKLVKRISALSRDGEPD 347 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC-- 397 + ++ + AL NDLNT A+ ++ + + + L + +L +++ Sbjct: 348 MAKAEELT-KGFSEALDNDLNTSLALTCVYDVLKADADDATKLYVIGEFDKVLSLDLTKV 406 Query: 398 ----KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 K + + + +E+L+ +R K +++AD IR +L+ +++D K+ Sbjct: 407 PESNKADADDDFAKEVEELIAQRTKARAEKDWATADAIRDKLKEMKVVVKDTKD 460 >gi|115502847|sp|Q8BYM8|SYCM_MOUSE RecName: Full=Probable cysteinyl-tRNA synthetase, mitochondrial; AltName: Full=Cysteine--tRNA ligase; Short=CysRS; Flags: Precursor gi|148690122|gb|EDL22069.1| mCG11180, isoform CRA_e [Mus musculus] Length = 551 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 144/405 (35%), Positives = 210/405 (51%), Gaps = 54/405 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 149 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPG 204 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P E W SPWG GRPGWHIECS M+S G DIH GG+DL Sbjct: 205 DSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDLA 264 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + ++ N ++H+G L+++G KMSKS N+ITI + L+T Sbjct: 265 FPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKT----- 319 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------- 336 + V RL L T+YR I+++ L EA+ LL Sbjct: 320 --FSPDVFRLFCLRTNYRSAIEYSDSTLVEAKHLLLGLASFVEDARAYVKGQLTCGPVEE 377 Query: 337 ---WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 W + +++K AV +AL ND +T A+ + L + + Sbjct: 378 DVLWERLTSTK----KAVKAALANDFDTPRAVNTILDLVHHANRQ 418 >gi|189234350|ref|XP_973716.2| PREDICTED: similar to cysteinyl-tRNA synthetase [Tribolium castaneum] Length = 501 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 203/391 (51%), Gaps = 45/391 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N R + + + Y CGPTVYD +HIG+A + D++ RLLR+Y+ Sbjct: 26 IKVFNCTARTKVPLIVKNKNLVTWYTCGPTVYDSSHIGHASCFVKLDIIQRLLRHYFNLN 85 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT V NITDIDDKII RA +P + + K +F KD L P R Sbjct: 86 VVT-VMNITDIDDKIIARANT--AKVPPKE----LAKKFEAEFWKDLDALDVRRPDCVLR 138 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-K 182 T ++ + I+ +I G AY+A +N + FD + NY Q +G PE Sbjct: 139 VTENMDVIKNFIRELIDKGKAYKAGDNSVYFDVGAYDNYAKL-------QNIGEDAPEPS 191 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+ DF LWK + P E W S WG+GRPGWHIECSA++ H LG DIH GG+DL F Sbjct: 192 KFKKSKMDFALWKAAKPGEISWVSEWGKGRPGWHIECSALAGHVLGPEIDIHAGGIDLRF 251 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRS 301 PHHENE AQSC + N W+H G L+L + +KMSKS N I+I+ +LE Sbjct: 252 PHHENEEAQSCARYCRPQWVNYWLHTGHLHLKDSQKMSKSLHNTISISSMLEDT------ 305 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQTST 342 AP R+A LM+HYR ++++ + + A +L + + Sbjct: 306 -TAPAFRMACLMSHYRSRMEYSNEFVITASKVLQNYINFVDNCQNYLNGYLKADVDNDTV 364 Query: 343 SKGIIDPA--VLSALYNDLNTVSAIQALHKL 371 SK +++ A + SAL +D NT I +++L Sbjct: 365 SKLVVESANKIHSALIDDFNTSEVISTINEL 395 >gi|224282426|ref|ZP_03645748.1| cysteinyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] Length = 540 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/532 (31%), Positives = 249/532 (46%), Gaps = 118/532 (22%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +K+Y+T ++ F I P + +YVCG TV HIG+ R + FDV+ R +LR Y Sbjct: 25 LKLYDTASHTVSRFTPIKPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWMLRLGY-- 82 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--------TQQFVKDTTRLA 115 VT+VRN+TDIDDKI+++A + + ++F + L Sbjct: 83 -QVTFVRNVTDIDDKILDKA--------------AVAGQQWWARAYFYEREFTQAYDTLG 127 Query: 116 CLAPTHQPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRR 168 L PT++PRAT H+ MI LI+ II +GH Y + + FD +S P+YG + + Sbjct: 128 VLPPTYEPRATGHMIDMIDLIRRIIDNGHGYVVYDADGKPTGNVYFDVASWPHYGELTHQ 187 Query: 169 K----------IDEQKMGTRVP----EKYH----------KKNPADFILWKRSTPMEPG- 203 K +MG V +KY+ K +P DF LWK P +P Sbjct: 188 KQGAAEADEAAAVADRMGPSVDAAGDDKYNPIDPADASPDKHDPRDFALWKAPKPTDPQD 247 Query: 204 --WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 W +P+G GRPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A ++ Sbjct: 248 ARWSTPFGVGRPGWHIECSAMSHRYLDGMFDIHGGGLDLRFPHHENEMAQTRAAGY--ES 305 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 A W+H+ ++ +G KMSKS G +++ +L +W V+R A+ YR ++ Sbjct: 306 AARWMHSAWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLE 358 Query: 322 FTVQRLTEAE--------------ILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVS 363 ++ Q L EA+ + L + P+ + G+ + +SA+ +D+N Sbjct: 359 WSDQALVEAQAAYERIMNFIERAGVALGEQPERAEIAGVSADDLPADFVSAMNDDVNVSG 418 Query: 364 AIQALHKLARES----TKNHDLLPIFNASAHI-------------LGIEVCKEHLNKNIS 406 A A+ R +K D A A + LG++ E Sbjct: 419 ATAAIFTAIRNGNTLLSKLDDRADGDAARAEVRSALVAVRAMLDALGLDPLAEPWAGAAG 478 Query: 407 I----------AIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILED 444 ++ L+ E+L K + F+ AD IR L + G +ED Sbjct: 479 ADGNGESREHDVLDALITEQLNARAEARKSRDFAKADAIRDALGAAGIAIED 530 >gi|315638875|ref|ZP_07894047.1| cysteine--tRNA ligase [Campylobacter upsaliensis JV21] gi|315481093|gb|EFU71725.1| cysteine--tRNA ligase [Campylobacter upsaliensis JV21] Length = 454 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 160/447 (35%), Positives = 226/447 (50%), Gaps = 50/447 (11%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I MY+CGPTVYD AH+G+AR I FD+L R+L G K + + RN TDIDDKI+++ ++ Sbjct: 20 ITMYLCGPTVYDNAHLGHARSSICFDLLRRVL-LSLGRK-LYFARNYTDIDDKILKKMQE 77 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 S+ IT K + +D L L P +P+AT +I QMI LI ++ G Sbjct: 78 SGESLEQ------ITQKYIAHYERDMKNLRVLEPDLKPKATEYIKQMIELILHLQRQGFT 131 Query: 146 YEANNEIIFDTSSIPNYGSFSRRK-IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y + I FDTS Y S S+R +D Q TR+ + KKN +DF+LWK E + Sbjct: 132 YTLEDGIYFDTSKDKEYLSLSKRGFMDNQ---TRLIAQKEKKNESDFVLWKFD---EGFY 185 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 +P+G+GRPGWH EC AM DIH GG+DL FPHHENE AQ CA + A+ Sbjct: 186 AAPFGKGRPGWHSECVAMIEALFKDSLDIHAGGVDLFFPHHENEAAQCRCAFN-KNLASH 244 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 W+HNGF+N+ G KMSKS N I + L K+F G + +R ++ HYR ++++ Sbjct: 245 WLHNGFVNINGEKMSKSLNNSFFIKDAL--KEFSGEA-----LRFYLMSVHYRAHFNYSL 297 Query: 325 QRLTEAEILLSKWPQTSTSKGI-------------IDPAVLSALYNDLNTVSAIQALH-- 369 + L+ + L K + + + +L AL +DLN A+ L Sbjct: 298 EDLSLCKKRLDKLYRLKKRLDLNSLEDKPKKCERELSLTILQALQDDLNISKALALLDEF 357 Query: 370 ------KLARESTKNHDLLPIFNASAHILGI--EVCKEHLNKNIS---IA-IEKLVQERL 417 KL L F A I G+ E + + S IA IE + +R Sbjct: 358 IANANLKLDENKALKEGLREDFKELAFIFGVGFEDVILYFQQGFSEEQIAWIETQITKRS 417 Query: 418 ILLKMKKFSSADYIRKQLESKGFILED 444 K K ++ AD +R+ L G +L D Sbjct: 418 EAKKAKDYALADKLRQDLAEFGVVLLD 444 >gi|26332939|dbj|BAC30187.1| unnamed protein product [Mus musculus] Length = 581 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/405 (35%), Positives = 210/405 (51%), Gaps = 54/405 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 67 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 124 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 125 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 178 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 179 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPG 234 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P E W SPWG GRPGWHIECS M+S G DIH GG+DL Sbjct: 235 DSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDLA 294 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + ++ N ++H+G L+++G KMSKS N+ITI + L+T Sbjct: 295 FPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKT----- 349 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------- 336 + V RL L T+YR I+++ L EA+ LL Sbjct: 350 --FSPDVFRLFCLRTNYRSAIEYSDSTLVEAKHLLLGLASFVEDARAYVKGQLTCGPVEE 407 Query: 337 ---WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 W + +++K AV +AL ND +T A+ + L + + Sbjct: 408 DVLWERLTSTK----KAVKAALANDFDTPRAVNTILDLVHHANRQ 448 >gi|225010586|ref|ZP_03701057.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium MS024-3C] gi|225005415|gb|EEG43366.1| cysteinyl-tRNA synthetase [Flavobacteria bacterium MS024-3C] Length = 492 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/483 (34%), Positives = 239/483 (49%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L K F I + MYVCGPTVY H+GN R + FD+++R L++ G K Sbjct: 9 LKIYNSLSGKKEIFTPITAGYVGMYVCGPTVYSQVHLGNCRTFMSFDMIFRYLKHL-GFK 67 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD +DKI ++AR E P+ + K T F T+ Sbjct: 68 -VRYVRNITDAGHLENDAEEGEDKIAKKARLEQIE-PME-----VVQKYTVDFHNILTQF 120 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRKID 171 L P+ +P AT HI + I +I II G+AY N + FD + +YG S RK++ Sbjct: 121 NLLPPSIEPTATGHIIEQIQIIDEIIAKGYAYHVNGSVYFDVQKFNETNDYGKLSGRKLE 180 Query: 172 EQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGK 229 + TR + + KK+P DF LWK++ P W S WG G PGWH+EC+AMS+ YLGK Sbjct: 181 DMLANTRSLTAQDEKKSPQDFALWKKAEPQHIMRWHSKWGDGFPGWHLECTAMSTKYLGK 240 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDIHGGG+DL FPHHE EIAQ+ + + W+H L L G+KMSKS N I Sbjct: 241 TFDIHGGGMDLKFPHHECEIAQAEATNGVSPV-KYWMHANMLTLNGKKMSKSTDNNILPG 299 Query: 290 ELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQ----- 339 E+ + + + A V+R M+ HY +D + + L +E L+ + Q Sbjct: 300 EIFSGENNILSKPFTASVLRFFMMQAHYTSILDLSNEALLASEKGHARLMEAFKQLDSVV 359 Query: 340 ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNA---- 387 T + SA+ +D NT I L + +E NH + A Sbjct: 360 VGNHTDFDLKSWEDKCYSAMNDDFNTPILIAHLFEGVKEINLLKEGNHQISQADKAHFTA 419 Query: 388 --SAHILGIEVCKEHL----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 A +L + KE + N +E L++ R K F+++D IR QL + G Sbjct: 420 LLKAFVLDVLGLKEGVEMATNSQTPALVEMLIKLRKEARDNKDFATSDAIRDQLLALGIQ 479 Query: 442 LED 444 L+D Sbjct: 480 LKD 482 >gi|260062016|ref|YP_003195096.1| cysteinyl-tRNA synthetase [Robiginitalea biformata HTCC2501] gi|88783578|gb|EAR14749.1| cysteinyl-tRNA synthetase [Robiginitalea biformata HTCC2501] Length = 492 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 241/497 (48%), Gaps = 69/497 (13%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ +K++N+L F I ++ MYVCGPTVY H+GN R + FD+++R LR+ Sbjct: 6 EQTLKVHNSLTGTKETFTPIHEGHVGMYVCGPTVYSNVHLGNCRTFMSFDLIFRYLRHL- 64 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 G K V +VRNITD +DKI ++AR E P+ + + T F Sbjct: 65 GYK-VRFVRNITDAGHLEDDADQGEDKIAKKARLEKIE-PME-----VVQRYTVDFHNIL 117 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRR 168 R L P+ +P AT HI + I +I+ I+ G+AYE N + FD YG S R Sbjct: 118 QRFNLLPPSIEPTATGHIVEQIEIIKVIMGRGYAYEKNGSVYFDVKRFNQDYEYGKLSGR 177 Query: 169 KIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHY 226 K+++ TR + + K+NP DF LWK++ P W SPWG G PGWH+EC+ MS+ Y Sbjct: 178 KLEDMIANTRELTAQDEKRNPQDFALWKKAEPQHIMRWPSPWGEGFPGWHLECTVMSTKY 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG FDIHGGG+DL FPHHE EIAQ+ + + W+H L L G+KM+KS GN + Sbjct: 238 LGDTFDIHGGGMDLKFPHHECEIAQAEAGND-QSPVRYWLHANMLTLNGKKMAKSTGNNL 296 Query: 287 TINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFTVQ----------RLTEAEILLS 335 E+ + + + V+R M+ HY +D + + RL EA L Sbjct: 297 LPGEIFSGENDILSKPFAPTVVRFFMMQAHYTSILDLSDEALLAAEKGYNRLMEAMEQLP 356 Query: 336 KWPQTSTSKGII----------------DPAVLSALYNDLNTVSAI----QALHKLARES 375 P TS + P +++ L+ + T++ + Q+L R++ Sbjct: 357 GLPTGKTSDFDVAAWRQRCYDAMNDDFNSPVLIAQLFEAVKTINLVRDGKQSLSPADRDT 416 Query: 376 TKNHDLLPIFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 + + + +LG+E + E L + + I+ Q R K + ++D Sbjct: 417 LQE----TMEGFAFEVLGLEPGRSQTQETEKLEGVMKLVIDLRNQAR----ANKDYHTSD 468 Query: 430 YIRKQLESKGFILEDYK 446 IR L G L+D K Sbjct: 469 QIRDTLSELGIQLKDGK 485 >gi|306823683|ref|ZP_07457058.1| cysteine--tRNA ligase [Bifidobacterium dentium ATCC 27679] gi|309802923|ref|ZP_07697024.1| cysteine--tRNA ligase [Bifidobacterium dentium JCVIHMP022] gi|304553390|gb|EFM41302.1| cysteine--tRNA ligase [Bifidobacterium dentium ATCC 27679] gi|308220390|gb|EFO76701.1| cysteine--tRNA ligase [Bifidobacterium dentium JCVIHMP022] Length = 557 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/526 (32%), Positives = 252/526 (47%), Gaps = 103/526 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T ++ F + P + +YVCG TV HIG+ R + FDV+ R + G K Sbjct: 39 LKLYDTASHTVSSFVPLKPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWFQRL-GYK 97 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRN+TDIDDKI+++A I ++F + L PT++PR Sbjct: 98 -ITFVRNVTDIDDKILDKAAAAGQQWWERAYIY------EREFTEAYDALGVEPPTYEPR 150 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-------IIFDTSSIPNYGSFSRRK-----IDE 172 AT H+ MI LI+ II +GH Y +E + FD +S P+YG + +K D Sbjct: 151 ATGHMIDMIDLIRKIIDNGHGYVVTDENGNPTGNVYFDVASWPHYGELTHQKQTAVSDDA 210 Query: 173 QK----MGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRG 211 K MG V +KY+ K +P DF LWK S P++ W +P+G G Sbjct: 211 SKITDAMGPSVDNAGDDKYNPIDPADMSPDKHDPRDFALWKAPKDSDPLDARWNTPFGTG 270 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ ++ Sbjct: 271 RPGWHIECSAMSHRYLKDMFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSAWV 328 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EA+ Sbjct: 329 TAKGEKMSKSLGNGLSVPAVLAENS----AW---VVRYALGSVQYRSMLEWSDQTLAEAQ 381 Query: 332 --------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQA------ 367 + + P + S + ++A+ +D+N AI A Sbjct: 382 SAYDRVANFIERAGAAVGEQPSHDEIAAISADALPADFVAAMNDDINVSGAIAAIFTAIR 441 Query: 368 -----LHKLARESTKNHDLLPIFNASAHI------LGIEVCKE--------------HLN 402 L KLA + + + A ++ LG++ E + Sbjct: 442 SGNTLLSKLADRADSDAAKAEVREALVNVRAMLDTLGLDPLAEPWVNGGVAGGAAGAAAD 501 Query: 403 KNISIAIEKLVQERLI----LLKMKKFSSADYIRKQLESKGFILED 444 A++KLV E+L K K F+ AD IR L + G +ED Sbjct: 502 SAEHAALDKLVSEQLAERAEARKSKDFARADAIRNALNAAGIAIED 547 >gi|296481581|gb|DAA23696.1| probable cysteinyl-tRNA synthetase, mitochondrial precursor [Bos taurus] Length = 555 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 229/475 (48%), Gaps = 74/475 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 44 VKVYNSLTRRKDPLIVSRADAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILSRVFG-- 101 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V V ITD+DDKII RA + ++ + + + + F +D L L PT Sbjct: 102 CTVVMVMGITDVDDKIIRRANE------MSVSPASLARLYEEDFKQDMAALKVLPPTAYL 155 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T H+PQ++ I+ +I +GHAY A + FD S + YG + +G P Sbjct: 156 RVTEHVPQIVAFIERLIANGHAYCTAKGNVYFDLQSRGDRYGKLV--GVAPGPVGE--PV 211 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P EP W SPWG GRPGWHIECS ++S G DIH GG+DL Sbjct: 212 DSDKRHTSDFALWKAAKPQEPFWGSPWGDGRPGWHIECSTIASLVFGSQLDIHSGGVDLA 271 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + + N ++H+G L+++ G KMSKS N++TI + L Sbjct: 272 FPHHENEIAQCEAFHQCPQWGNYFLHSGHLHVKGGGEKMSKSLKNYVTIKDFL------- 324 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------- 336 RS V RL L + YR ID++ L EA LL Sbjct: 325 RSTSPDVFRLFCLRSSYRSAIDYSEGALLEARSLLRATAAFVEDARAYLRGQLAGGPIQE 384 Query: 337 ---WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL---PIFNASAH 390 W + +K AV +AL +D +TV A+ A+ L + P S Sbjct: 385 DVLWERLGRTKA----AVQAALADDFDTVRAVDAVMDLVHHGNRQLKAASEEPRGPRSPA 440 Query: 391 ILGIEVCK-EHLNKNISI---------------AIEKLVQERLIL-LKMKKFSSA 428 +LG V EH + + + A+ LV+E + LK+++F+ A Sbjct: 441 VLGAVVASVEHFFETVGVSLAERQCVPGAGSPAALHSLVEELVCFRLKVRQFALA 495 >gi|310286868|ref|YP_003938126.1| cysteinyl-tRNA synthetase [Bifidobacterium bifidum S17] gi|309250804|gb|ADO52552.1| cysteinyl-tRNA synthetase [Bifidobacterium bifidum S17] Length = 540 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 164/524 (31%), Positives = 246/524 (46%), Gaps = 102/524 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +K+Y+T ++ F I P + +YVCG TV HIG+ R + FDV+ R +LR Y Sbjct: 25 LKLYDTASHTVSRFTPIKPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWMLRLGY-- 82 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKI+++A ++F + L L PT++P Sbjct: 83 -QVTFVRNVTDIDDKILDKAAAAGQQWWARAYF------YEREFTQAYDTLGVLPPTYEP 135 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK------- 169 RAT H+ MI LI+ II +GH Y + + FD +S P+YG + +K Sbjct: 136 RATGHMIDMIDLIRRIIDNGHGYVVYDADGKPTGNVYFDVASWPHYGELTHQKQGAAEAD 195 Query: 170 ---IDEQKMGTRVP----EKYH----------KKNPADFILWKRSTPMEPG---WESPWG 209 +MG V +KY+ K +P DF LWK P +P W +P+G Sbjct: 196 EAAAVADRMGPSVDAAGDDKYNPIDPADASPDKHDPRDFALWKAPKPTDPQDARWSTPFG 255 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A ++A W+H+ Sbjct: 256 VGRPGWHIECSAMSHRYLDGMFDIHGGGLDLRFPHHENEMAQTRAAGY--ESAARWMHSA 313 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L E Sbjct: 314 WVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALVE 366 Query: 330 AE--------------ILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKL 371 A+ + L + P+ + G+ + +SA+ +D+N A A+ Sbjct: 367 AQAAYERIMNFIERAGVALGEQPERAEIAGVSADDLPADFVSAMNDDVNVSGATAAIFTA 426 Query: 372 ARES----TKNHDLLPIFNASAHI-------------LGIEVCKE--------------H 400 R +K D A A + LG++ E Sbjct: 427 IRNGNTLLSKLDDRADGDAARAEVRSALVAVRAMLDALGLDPLAEPWAGAAGADGNGESR 486 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + I + + R K + F+ AD IR L + G +ED Sbjct: 487 EHDVLDALITEQLNARAEARKSRDFAKADAIRDALGAAGIAIED 530 >gi|186471445|ref|YP_001862763.1| cysteinyl-tRNA synthetase [Burkholderia phymatum STM815] gi|184197754|gb|ACC75717.1| cysteinyl-tRNA synthetase [Burkholderia phymatum STM815] Length = 465 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 228/467 (48%), Gaps = 31/467 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + +Y+T R + F +I+ MY CGPTVYD AHIGN R + DVL R L+R Y Sbjct: 4 LMLYDTWSRALRPFVSIEAGRAGMYCCGPTVYDHAHIGNLRTYVFEDVLRRALVRNGYQ- 62 Query: 64 KCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + +V NITD+ D + E S ++ I S+ T FV D L L P Sbjct: 63 --LRHVVNITDVGHLVSDADEGEDKMEKGSRRTGESAWTIASRYTDAFVSDWRALNLLEP 120 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + RAT+HI + I I + G+ Y ++ + FDT +YG +R + G RV Sbjct: 121 SIWCRATDHIAEQIAFIVELERGGYVYRTDDGLYFDTGKQHSYGYLARLDRAGLQAGKRV 180 Query: 180 PEKYHKKNPADFILWKRS---TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 KKN DF LWK S + W+SPWGRG PGWHIECSAMS+ YLG FDIH G Sbjct: 181 ALG-AKKNITDFALWKFSPVDVKRQMEWDSPWGRGFPGWHIECSAMSAKYLGTSFDIHCG 239 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G D I HH NEIAQ+ A + AN W+H FL L KMSKSNG+FI + L + Sbjct: 240 GEDHIAVHHSNEIAQTEAA-YGTRLANFWLHGRFLTLSAAKMSKSNGDFIRLQTLRD--- 295 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL-------SKWPQTSTSKGIIDP 349 R R L HYR + FT + L A+ L ++W Q + Sbjct: 296 ---RHIDPIAYRYLCLTAHYRSNLHFTWESLYAAQAALNRLRHAYARWRQKNALADARFV 352 Query: 350 AVLSALYN-DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-EHLNKNISI 407 A A N DLN +A+ L L + + ++ +LG+ + L I Sbjct: 353 ARFDAEVNEDLNMPNALAVLWDLVKSDLPDATRRASVDSFDAVLGLGLRDWTPLATEIPE 412 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 I+ L+ ER + ++ +D +R L+ +G+ +ED + +GQR+ Sbjct: 413 DIQALLDERARVRLEGDWAKSDALRTTLQLRGWQVEDGR---DGQRV 456 >gi|313139572|ref|ZP_07801765.1| cysteinyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313132082|gb|EFR49699.1| cysteinyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] Length = 550 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 164/532 (30%), Positives = 247/532 (46%), Gaps = 118/532 (22%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +K+Y+T ++ F I P + +YVCG TV HIG+ R + FDV+ R +LR Y Sbjct: 35 LKLYDTASHTVSRFTPIKPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWMLRLGY-- 92 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--------TQQFVKDTTRLA 115 VT+VRN+TDIDDKI+++A + + ++F + L Sbjct: 93 -QVTFVRNVTDIDDKILDKA--------------AVAGQQWWARAYFYEREFTQAYDTLG 137 Query: 116 CLAPTHQPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRR 168 L PT++PRAT H+ MI LI+ II +GH Y + + FD +S P+YG + + Sbjct: 138 VLPPTYEPRATGHMIDMIDLIRRIIDNGHGYVVYDADGKPTGNVYFDVASWPHYGELTHQ 197 Query: 169 K----------IDEQKMGTRVP----EKYH----------KKNPADFILWKRSTPMEPG- 203 K +MG V +KY+ K +P DF LWK P +P Sbjct: 198 KQGAAEADEAAAVADRMGPSVDAAGDDKYNPIDPADASPDKHDPRDFALWKAPKPTDPQD 257 Query: 204 --WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 W +P+G GRPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A ++ Sbjct: 258 ARWSTPFGVGRPGWHIECSAMSHRYLDGMFDIHGGGLDLRFPHHENEMAQTRAAGY--ES 315 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 A W+H+ ++ +G KMSKS G +++ +L +W V+R A+ YR ++ Sbjct: 316 AARWMHSAWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLE 368 Query: 322 FTVQRLTEAE--------------ILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVS 363 ++ Q L EA+ + L + P+ + G+ + +SA+ +D+N Sbjct: 369 WSDQALVEAQAAYERIMNFIERAGVALGEQPERAEIAGVSADDLPADFVSAMNDDVNVSG 428 Query: 364 AIQALHKLARES----TKNHDLLPIFNASAHI-------------LGIEVCKEHLNKN-- 404 A A+ R +K D A A + LG++ E Sbjct: 429 ATAAIFTAIRNGNTLLSKLDDRADGDAARAEVRSALVAVRAMLDALGLDPLAEPWAGAAG 488 Query: 405 ------------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I + + R K + F+ AD IR L + G +ED Sbjct: 489 ADGNGESREHDVLDALITEQLNARAEARKSRDFAKADAIRDALGAAGIAIED 540 >gi|213691306|ref|YP_002321892.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522767|gb|ACJ51514.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457373|dbj|BAJ67994.1| cysteinyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 549 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/545 (31%), Positives = 250/545 (45%), Gaps = 111/545 (20%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 29 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 88 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A ++F + L L PT Sbjct: 89 ---KVTFVRNVTDIDDKILDKAAA------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 139 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK----I 170 +PRAT H+ MI LIQ I+ +GH Y + + FD +S P+YG + +K + Sbjct: 140 EPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFDVASWPHYGELTHQKQTSEV 199 Query: 171 DE-----QKMGTRV----PEKYH----------KKNPADFILWKR---STPMEPGWESPW 208 DE +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 200 DEAAAVADRMGPSVDATGADKYNPVDPADASPDKHDPRDFALWKAPKDTDPEDARWSTPF 259 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+C A +A W+H+ Sbjct: 260 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTCAAGY--PSAARWMHS 317 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 318 AWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALV 370 Query: 329 EAE--------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHK 370 EA+ + L P + S + ++A+ +D+N A A+ Sbjct: 371 EAQAAYDRVSNFIERAGVALGGQPSREEVAAVSADDLPADFVAAMNDDVNVSGATAAIFT 430 Query: 371 LAR---------------ESTKNH--DLLPIFNASAHILGIEVCKEHLNKNIS------- 406 R E+ K + L A LG++ E Sbjct: 431 AIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVSAGVAGGAADG 490 Query: 407 -------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 A+E L+ E+L K K F AD IR L G +ED G + + Sbjct: 491 TAESPEHAALEALIAEQLNARAEARKAKDFVKADQIRDALTEAGIAIED------GPQGS 544 Query: 456 RWKQK 460 W K Sbjct: 545 TWSLK 549 >gi|312881510|ref|ZP_07741296.1| cysteinyl-tRNA synthetase CysS [Vibrio caribbenthicus ATCC BAA-2122] gi|309370787|gb|EFP98253.1| cysteinyl-tRNA synthetase CysS [Vibrio caribbenthicus ATCC BAA-2122] Length = 457 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 162/462 (35%), Positives = 229/462 (49%), Gaps = 43/462 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++T++R+I F AI + +Y CGPTVYD+AHIGN R + D L R+ + + Sbjct: 6 LNLFDTMKRQIIPFNAIKNGKVSLYACGPTVYDYAHIGNLRTYLFVDTLKRV--FTLNDY 63 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V NITD+ +DK+ + AR++ N + I F D +L Sbjct: 64 QVNHVMNITDVGHLVSDGDTGEDKMEKGARKQ------NKSAWEIARYFENIFFNDLAKL 117 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P RAT HI + I IQ++ G Y ++ + FDT + +YG +R Sbjct: 118 NISRPNITCRATEHIQEQIEFIQSLEEQGFTYLTDDGVYFDTRKLNDYGKLARLDKLGLS 177 Query: 175 MGTRVPEKYHKKNPADFILWK----RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 G R+ E KK+P DF LWK R ME W SPWG G PGWHIECSAM+ YLGK Sbjct: 178 PGKRI-ELGDKKSPTDFALWKLSGRRQRQME--WPSPWGIGFPGWHIECSAMAEKYLGKQ 234 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIH GG D I HH NEIAQ C A AN W+H FL L+ K+SKS G +T+N Sbjct: 235 FDIHIGGEDHIPVHHTNEIAQ-CEAKNGHIQANYWLHGYFLQLDNEKISKS-GVSLTLNT 292 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKGI 346 L+E + + R L +HYR ++FT Q L A+ L++K Q+ G Sbjct: 293 LIE------KGFDPLDYRYLTLTSHYRSHLNFTWQGLAGAQKARRRLMTKL-QSLPKGGK 345 Query: 347 IDPAVLSALYN----DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN 402 IDP+ S D N A+ + + D + G+++ +E + Sbjct: 346 IDPSYQSQFVGFINQDFNMPRALALVWAILDSHLNGADKRATLVYFDQVFGLDMERE-VK 404 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I + IEKL Q+R L + + AD IR +LE G+ + D Sbjct: 405 LIIPVEIEKLAQQRHQLKQQGNYQDADQIRAELEKLGYQIND 446 >gi|87200394|ref|YP_497651.1| cysteinyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444] gi|109894915|sp|Q2G5Q6|SYC_NOVAD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|87136075|gb|ABD26817.1| cysteinyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444] Length = 493 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 160/485 (32%), Positives = 241/485 (49%), Gaps = 62/485 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L R++ FQ + R+Y CGPTVY++ HIGN R + D+L R L + G K Sbjct: 15 LRLFNSLTRQLEAFQPVHAGEARVYSCGPTVYNYPHIGNMRAYVFADLLGRTLSFK-GLK 73 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 +T+V NITD+ +DK+ + AR E SI I TQ + +D L Sbjct: 74 -LTHVINITDVGHLTDDADEGEDKMEKMARAEARSI------WDIAKHYTQAYWEDVKAL 126 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P AT ++PQMI + I H YE ++ + FD S++ +YG +R + +E + Sbjct: 127 NIRQPARWTIATEYVPQMIAFAERIAAK-HCYELDSGLYFDVSTVADYGRLARAQTEEGE 185 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R+ K+N ADF +W+++ P E W+SPWGRG PGWH+ECS MS LG F Sbjct: 186 --GRIEAVEGKRNGADFAIWRKTPPGEKRQMEWDSPWGRGAPGWHLECSVMSGEVLGFPF 243 Query: 232 DIHGGGLDLIFPHHENEIAQS---CCADRIEKTAN----IWIHNGFLNLEGRKMSKSNGN 284 DIH GG+D HH NEIAQ+ CC + ++ AN IW+HN FL KMSKS+G Sbjct: 244 DIHTGGIDHREIHHPNEIAQNQAFCCTNGLDVPANSGARIWMHNNFLVERSGKMSKSSGE 303 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------- 337 F+ + L++ + + RL L HYR ++F+ + L A L + Sbjct: 304 FLRLQLLID------KGYHPLAYRLMCLQAHYRSELEFSWEGLGAALTRLKRMLIAVGQL 357 Query: 338 ----PQTSTSKGIIDPAVL----SALYNDLNTVSAIQALHK-LARESTKNHDLLPIFNAS 388 P+ + G L +A+ +DLNT A+ + L + D L A Sbjct: 358 KERAPEVAAQPGPRFTPFLERFDAAMSDDLNTAVALTVFEEVLGLKKVDPADKLAAVAAM 417 Query: 389 AHILG---IEVCKEHLN---KNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 +LG +E+ + L K + I IE L+ R K F+ +D +R Q+ +KG Sbjct: 418 DAVLGLGLLELDRRALRIRPKGVEIDEAGIEALLDARKAARAEKDFARSDALRDQIAAKG 477 Query: 440 FILED 444 + D Sbjct: 478 VEVMD 482 >gi|39938627|ref|NP_950393.1| cysteinyl-tRNA synthetase [Onion yellows phytoplasma OY-M] gi|61216243|sp|Q6YR75|SYC_ONYPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|39721736|dbj|BAD04226.1| cysteinyl-tRNA synthetase [Onion yellows phytoplasma OY-M] Length = 438 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 161/466 (34%), Positives = 223/466 (47%), Gaps = 58/466 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L RK F P I MYVCGPTVY+ H+GN RP+I FD + R L Sbjct: 2 LKIYNSLTRKKEFFNPAHPPQINMYVCGPTVYNHLHLGNTRPLIFFDTVKRYLEMLNFR- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDKIIE A + + D + +K + F L +P+ Sbjct: 61 -VYYVVNITDIDDKIIENALKN--QVLEQD----LANKYIKSFNNLLKTLNIQTINFKPQ 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI IQ ++ G AY + I F S I +YG ++ + + K R Sbjct: 114 ATQYINSMIVYIQTLLDQGFAYFTDQGIYFRVSKIDDYGKLKKQDLSQLKQNARKQLDPQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DFILWK+ T + SPW GRPGWH EC+ M DIHGGG DL FPH Sbjct: 174 KEFPGDFILWKK-TSQGITYPSPWFAGRPGWHTECATMIEQLFKLPLDIHGGGTDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A +K AN ++H L+ + +KMSKS GN I +LL + + Sbjct: 233 HENEIAQTH-AHSHQKLANFFMHVERLDYQNQKMSKSLGNIIWCKDLL-------KQYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 +I+L +L THYR+PI+F+ + +A+ + I D + Y +N S Sbjct: 285 CIIKLLILSTHYRKPINFSYDLMEQAQ---------QKYQKITDFLTKNNFYLKVNQFSC 335 Query: 365 -------IQALHKLARESTKNHDLLPIFNAS---AHILGI-----------------EVC 397 +Q H+L ++ H ++ + + AH I Sbjct: 336 QALDQDIMQLFHQLMQDDLATHKVIDLMEQTIKQAHQTQILDKLSQFQNSLLLILNILGI 395 Query: 398 KEHLNKNISIAIEK--LVQERLILLKMKKFSSADYIRKQLESKGFI 441 NK ++ L Q+ K + F+ AD +RKQL KGFI Sbjct: 396 TIPFNKPTKTDLQTYFLWQDAR---KYRDFAQADILRKQLLDKGFI 438 >gi|262165957|ref|ZP_06033694.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM223] gi|262025673|gb|EEY44341.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM223] Length = 372 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 201/386 (52%), Gaps = 38/386 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T + Q+ D L P +PRAT +I ++I L+Q +I G AY A+N +++F+ Sbjct: 1 MTERLIQEMYADFDALNIKRPDVEPRATAYIEEIIALVQRLIERGFAYVADNGDVMFEVG 60 Query: 158 SIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHI 217 YG S++ +++ + G RV + K++P DF+LWK S P EP WESPWG GRPGWHI Sbjct: 61 KYDEYGKLSKQDLEQLQAGARVDVEAAKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHI 120 Query: 218 ECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRK 277 ECSAM+S LG FDIHGGG DL FPHHENEIAQSCCA + N W+H+G + ++ K Sbjct: 121 ECSAMNSSILGNHFDIHGGGSDLQFPHHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKEK 179 Query: 278 MSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 MSKS GNF TI ++L + A +R ++ HYR ++++ + L +A L + Sbjct: 180 MSKSLGNFFTIRDVL-------GHYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERL 232 Query: 338 PQTSTSKGIIDPAV---------LSALYNDLNTVSAIQALHKLARE--STKNHDLL---- 382 PA +A+ +D NT A L +ARE K+ DL Sbjct: 233 YNALRGLDRSVPAAGGEEYLSRFTAAMNDDFNTPEAYSVLFDMAREINRLKSEDLTNASA 292 Query: 383 --PIFNASAHILGI------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ++GI + + IE L++ R K +++AD R + Sbjct: 293 LGSLMRELADVIGILYQEPETFFQGSAEDEEAEQIEALIKLRNDSRAAKDWANADMARDK 352 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L G +LED G T W++K Sbjct: 353 LNEMGIVLED------GPNGTTWRRK 372 >gi|212716741|ref|ZP_03324869.1| hypothetical protein BIFCAT_01678 [Bifidobacterium catenulatum DSM 16992] gi|212660445|gb|EEB21020.1| hypothetical protein BIFCAT_01678 [Bifidobacterium catenulatum DSM 16992] Length = 556 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 170/525 (32%), Positives = 247/525 (47%), Gaps = 102/525 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+T ++ F I P + MYVCG TV HIG+ R + FDV+ R G K Sbjct: 39 LKLYDTASHAVSNFTPIKPGQVGMYVCGATVQSSPHIGHIRAAVTFDVVRRWFERL-GYK 97 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN+TDIDDKI+++A I ++F + L PT++PR Sbjct: 98 -VTFVRNVTDIDDKILDKAAAAGQQWWERAYIY------EREFTEAYNTLGVEPPTYEPR 150 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-------IIFDTSSIPNYGSFSRRKIDE----- 172 AT H+ MI LI+ II +GH Y +E + FD +S P+YG + +K Sbjct: 151 ATGHMIDMIDLIKQIIDNGHGYVVTDENGNPTGNVYFDVASWPHYGELTHQKQTAVADAA 210 Query: 173 ----QKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRG 211 MG V +KY+ K +P DF LWK S P++ W +P+G G Sbjct: 211 SEVADAMGPSVDNAGNDKYNPVDPADMSEDKHDPRDFALWKAPKDSDPLDARWNTPFGTG 270 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ ++ Sbjct: 271 RPGWHIECSAMSHRYLKDMFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSAWV 328 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EA+ Sbjct: 329 TAKGEKMSKSLGNGLSVPAVLAENS----AW---VVRYALGSVQYRSMLEWSDQTLPEAQ 381 Query: 332 ILLSKWPQ------------------TSTSKGIIDPAVLSALYNDLNTVSAIQA------ 367 + S S + ++A+ +D+N A A Sbjct: 382 SAYDRVSNFIERAGAAVGGQPPREEIVSISADALPADFVAAMNDDINVSGASAAIFTAIR 441 Query: 368 -----LHKLA----RESTKNHDLLPIFNASAHI--LGIEVCKEHLNKNIS---------- 406 L KLA + K+ + N A + LG++ E + Sbjct: 442 SGNTLLSKLADRVDSDVAKDEVRAVLVNVRAMLDTLGLDPLAEPWVSEGAAGGAGSGADS 501 Query: 407 ---IAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFILED 444 A+++LV +ER K K F+ AD IR L + G +ED Sbjct: 502 AEHTALDRLVSEQLEERAEARKAKDFARADAIRDALGAAGITIED 546 >gi|291528005|emb|CBK93591.1| cysteinyl-tRNA synthetase [Eubacterium rectale M104/1] Length = 475 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 211/421 (50%), Gaps = 42/421 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K YNTL R+I I MY CGPTVY FAHIGN R I+ DVL + LRY Sbjct: 1 MENNFKFYNTLTRQIDTVVPRVDGKIGMYTCGPTVYHFAHIGNIRSYIMEDVLEKALRYV 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V V NITD+ +DK+++ A++EH S+ + + T F KD Sbjct: 61 GYD--VKRVMNITDVGHLSSDGDTGEDKMLKGAKREHKSV------MEVAKEYTDAFFKD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 T + P ATN IP+ I++++ +I G+AY A + FDTS + +Y FS Sbjct: 113 FTAVHNRMPDVVEPATNCIPEFIHMVEVLIEKGYAYFAGGNVYFDTSKLDDYFVFSSAVE 172 Query: 171 DEQ-KMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSS 224 EQ ++G R V E +KKN DF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KEQLQVGVRDDVEEDVNKKNKNDFVLWFTQSKFEDQALKWDSPWGVGYPGWHIECSCISM 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +LG+ DIH GG+D IFPHH NEIAQS W H LN KMSKS G Sbjct: 233 KHLGEYVDIHCGGVDNIFPHHTNEIAQSESY-LGHDWCKYWFHVNHLNDRAGKMSKSKGA 291 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-- 342 +T++ L E + + R L +HYR+P++F+ L A +K + Sbjct: 292 ILTVSVLQE------KGYNPLAYRFFCLQSHYRKPLEFSFDALDNAVAAYNKIAKRVAEL 345 Query: 343 -SKGIIDPAVLS--------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 +G ID + A+ NDLNT AI ++ + + + L + + +L Sbjct: 346 KDEGDIDETAFADFKKKFTDAVSNDLNTSMAITIVYDVLKADISDRTKLALIDDFEQVLD 405 Query: 394 I 394 + Sbjct: 406 L 406 >gi|238923819|ref|YP_002937335.1| cysteinyl-tRNA synthetase [Eubacterium rectale ATCC 33656] gi|238875494|gb|ACR75201.1| cysteinyl-tRNA synthetase [Eubacterium rectale ATCC 33656] Length = 475 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 211/421 (50%), Gaps = 42/421 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K YNTL R+I I MY CGPTVY FAHIGN R I+ DVL + LRY Sbjct: 1 MENNFKFYNTLTRQIDTVVPRVDGKIGMYTCGPTVYHFAHIGNIRSYIMEDVLEKALRYV 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V V NITD+ +DK+++ A++EH S+ + + T F KD Sbjct: 61 GYD--VKRVMNITDVGHLSSDGDTGEDKMLKGAKREHKSV------MEVAKEYTDAFFKD 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI 170 T + P ATN IP+ I++++ +I G+AY A + FDTS + +Y FS Sbjct: 113 FTAVHNRMPDVVEPATNCIPEFIHMVEVLIEKGYAYFAGGNVYFDTSKLDDYFVFSSAVE 172 Query: 171 DEQ-KMGTR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSS 224 EQ ++G R V E +KKN DF+LW + E W+SPWG G PGWHIECS +S Sbjct: 173 KEQLQVGVRDDVEEDVNKKNKNDFVLWFTQSKFEDQALKWDSPWGVGYPGWHIECSCISM 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +LG+ DIH GG+D IFPHH NEIAQS W H LN KMSKS G Sbjct: 233 KHLGEYVDIHCGGVDNIFPHHTNEIAQSESY-LGHDWCKYWFHVNHLNDRAGKMSKSKGA 291 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-- 342 +T++ L E + + R L +HYR+P++F+ L A +K + Sbjct: 292 ILTVSVLQE------KGYNPLAYRFFCLQSHYRKPLEFSFDALDNAVAAYNKIAKRVAEL 345 Query: 343 -SKGIIDPAVLS--------ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 +G ID + A+ NDLNT AI ++ + + + L + + +L Sbjct: 346 KDEGDIDETAFADFKKKFTDAVSNDLNTSMAITIVYDVLKADISDRTKLALIDDFEQVLD 405 Query: 394 I 394 + Sbjct: 406 L 406 >gi|257459527|ref|ZP_05624636.1| cysteinyl-tRNA synthetase [Campylobacter gracilis RM3268] gi|257442952|gb|EEV18086.1| cysteinyl-tRNA synthetase [Campylobacter gracilis RM3268] Length = 476 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 156/473 (32%), Positives = 231/473 (48%), Gaps = 64/473 (13%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY++L +K F+ I +R+Y CGPTVYD AH+G+A+ + FD+L R+L+ E V Sbjct: 3 IYDSLSKKKLPFKPISDGLVRIYACGPTVYDDAHLGHAKSAVSFDLLRRVLQAEGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 + RN TDIDDKI+++ Q S + IT T+++++D + L + P+AT Sbjct: 61 KFARNFTDIDDKILKKMEQSGKS------LEEITEFYTRRYLQDMSALNVADASISPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +I + LI +++ G AYE A + I FDT +Y S S +K K RV K Sbjct: 115 ENIAAICELISSLLQKGFAYEIAGDGIYFDTRKDGDYLSLSGKKEGAGKNIARVASNDAK 174 Query: 186 KNPADFILWKRSTPMEPGW-ESPWGRGRPGWHIECSAMSSHYLGK-----VFDIHGGGLD 239 + DF+LWK + W +SP+G+GRPGWH EC AM +L DIH GG D Sbjct: 175 HDEKDFVLWK----FDENWFDSPFGKGRPGWHSECVAMILAHLDSGDPQFCIDIHAGGAD 230 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE AQ CA R + W+HNGF+ + KMSKS GN + + L+ Sbjct: 231 LLFPHHENEAAQCRCA-RHRALSKYWLHNGFVQVNNEKMSKSLGNSFFVGDALKIA---- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------WPQ 339 P +R +L +HYR +++V L ++ L K P+ Sbjct: 286 ---PGEALRFYLLSSHYRANFNYSVTDLLASKKRLDKIYRLKKRVRDILTPVAGQNSAPK 342 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA-----------S 388 ++ ++ L +DLNT A+ L + + D P A + Sbjct: 343 LPAAEVKFRSEMMEFLSDDLNTSGALAVLDSFVASANEALDRAPKDKALKARIAANLEFA 402 Query: 389 AHILGI--EVCKEHLNKNIS----IAIEKLVQERLILLKMKKFSSADYIRKQL 435 LGI E E+ +S IE+L+++R K F+SAD IR +L Sbjct: 403 KQTLGILYEDETEYFRFGVSEQQRAQIEELIKQRAQAKAEKDFASADAIRARL 455 >gi|171741395|ref|ZP_02917202.1| hypothetical protein BIFDEN_00478 [Bifidobacterium dentium ATCC 27678] gi|283455255|ref|YP_003359819.1| cysteinyl-tRNA synthetase [Bifidobacterium dentium Bd1] gi|171277009|gb|EDT44670.1| hypothetical protein BIFDEN_00478 [Bifidobacterium dentium ATCC 27678] gi|283101889|gb|ADB08995.1| cysS Cysteinyl-tRNA synthetase [Bifidobacterium dentium Bd1] Length = 547 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 170/527 (32%), Positives = 251/527 (47%), Gaps = 103/527 (19%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+Y+T ++ F + P + +YVCG TV HIG+ R + FDV+ R + G Sbjct: 28 ELKLYDTASHTVSSFVPLRPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWFQRL-GY 86 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K VT+VRN+TDIDDKI+++A I ++F + L PT++P Sbjct: 87 K-VTFVRNVTDIDDKILDKAAAAGQQWWERAYIY------EREFTEAYDTLGVEPPTYEP 139 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE-------IIFDTSSIPNYGSFSRRK-----ID 171 RAT H+ MI LI+ II +GH Y +E + FD +S P+YG + +K D Sbjct: 140 RATGHMIDMIDLIRKIIDNGHGYVVTDENGNPTGNVYFDVASWPHYGELTHQKQTAVSDD 199 Query: 172 EQK----MGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGR 210 K MG V +KY+ K +P DF LWK S P++ W +P+G Sbjct: 200 ASKITDAMGPSVDNAGDDKYNPIDPADMSPDKHDPRDFALWKAPKDSDPLDARWNTPFGT 259 Query: 211 GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 GRPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ + Sbjct: 260 GRPGWHIECSAMSHRYLKDMFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSAW 317 Query: 271 LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EA Sbjct: 318 VTAKGEKMSKSLGNGLSVPAVLAENS----AW---VVRYALGSVQYRSMLEWSDQTLAEA 370 Query: 331 E--------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQA----- 367 + + + P + S + ++A+ +D+N A A Sbjct: 371 QSAYDRVANFIERAGAAVGEQPSHDEIAAISADALPADFVAAMNDDINVSGATAAIFTAI 430 Query: 368 ------LHKLARESTKN------HDLLPIFNASAHILGIEVCKE--------------HL 401 L KLA + + + L A LG++ E Sbjct: 431 RSGNTLLSKLADRADSDAAKAEVREALVNVRAMLDTLGLDPLAEPWVNGGVAGGAAGAAA 490 Query: 402 NKNISIAIEKLVQERLI----LLKMKKFSSADYIRKQLESKGFILED 444 + A++KLV E+L K K F+ AD IR L + G +ED Sbjct: 491 DSAEHAALDKLVSEQLAERAEARKSKDFARADAIRNALNAAGIAIED 537 >gi|197294544|ref|YP_001799085.1| Cysteinyl-tRNA synthetase [Candidatus Phytoplasma australiense] gi|171853871|emb|CAM11833.1| Cysteinyl-tRNA synthetase [Candidatus Phytoplasma australiense] Length = 439 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 234/459 (50%), Gaps = 43/459 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L + +F + P ++ MYVCGPTVY+ H+GNARP+I F+ + + L G K Sbjct: 2 LKIYNSLTNQKEDFIPLSPPDVNMYVCGPTVYNHLHLGNARPLIFFNTVKKYLETI-GFK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV NITDIDDKII+ + Q+ ++ + F++ L P+ Sbjct: 61 -VFYVVNITDIDDKIIKSSLQKQTKE------EVLAKEYISSFLQLLKDLNIETINSHPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ATN+IP MI I+ ++ G AY + I F+ S I +YG + + + K R + Sbjct: 114 ATNYIPSMIEYIKVLLDKGFAYFTDQGIYFEISKISDYGQLKNQDLTQLKKNARKTLDPN 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK+ T ++SPW GRPGWH EC M DIHGGG DL FPH Sbjct: 174 KKKPGDFVLWKK-TSQGVQYQSPWFCGRPGWHTECVTMIEQIFKTSLDIHGGGADLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NEIAQ+ A + AN ++H L+ E +KMSKS GN + +LL + + + Sbjct: 233 HQNEIAQA-KAYKNNNLANFFMHVARLDFENQKMSKSLGNIVWCKDLL-------KRFSS 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSKWPQTSTSKGIID--PAVLS 353 VI+ +L THYR+PI+F+ + +++ ++ + + K I+D P ++ Sbjct: 285 SVIKFFILSTHYRKPINFSENLIKQSQKKYDKIMLFLIKNDFYLQIKKKPIVDLEPKIID 344 Query: 354 ALY----NDLNTVSAIQALH---KLARESTKNHDLLPIFNAS----AHILGIEVCKEHLN 402 + + +D +T I + K A + ++ D L + S +LGIE Sbjct: 345 SFHRLMKDDFSTNKVIDLIEINIKEAYQKQQDLDFLAKIHKSLLWILDVLGIEPQFFRAE 404 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 K K + R + K F AD++RK+L K + Sbjct: 405 KKDFETYVKWQEAR----QNKDFKQADFLRKELIDKNLL 439 >gi|163785696|ref|ZP_02180221.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159879035|gb|EDP73014.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 382 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 124/319 (38%), Positives = 173/319 (54%), Gaps = 38/319 (11%) Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KII RA++E +P ++I+ + + + +D +PR T HIP +I LIQ Sbjct: 1 KIINRAKKE--CLPF----TVISDRYIKSYFEDAENFKIEPADVEPRVTTHIPDIIDLIQ 54 Query: 138 NIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS 197 +I G+AYE ++ F +YG S+R +DE G RV KK+P DF LWK S Sbjct: 55 KLIEKGYAYEVEGDVYFSVRKFKDYGKLSKRSVDELIAGARVEPGEKKKDPLDFALWKAS 114 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W+SPWG+GRPGWH EC+AM +LG+ DIHGGGLDL FPHHENE+AQ+ Sbjct: 115 KAGEPAWDSPWGKGRPGWHTECTAMIFKHLGQTIDIHGGGLDLTFPHHENELAQAEALSE 174 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + A WIHNG + + G+KMSKS GN+IT+ E+ + + ++RL +L HYR Sbjct: 175 -KPFAKYWIHNGLVTVNGQKMSKSLGNYITLKEIYQ-------KYHPDILRLLVLSVHYR 226 Query: 318 EPIDFTVQRLTEAEI-------------LLSKWPQT---------STSKGIIDPAVLSAL 355 P+DF+ ++ E + +L K P+ T+K D A+ Sbjct: 227 SPLDFSWDKMEEMKKAYERLKNAIDEYEILEKLPENPDFEEDLYGKTAKAQQD--FYRAM 284 Query: 356 YNDLNTVSAIQALHKLARE 374 ND NT A AL+ L RE Sbjct: 285 SNDFNTPEAFAALYGLVRE 303 >gi|239622493|ref|ZP_04665524.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514490|gb|EEQ54357.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 536 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 170/546 (31%), Positives = 253/546 (46%), Gaps = 112/546 (20%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 15 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 74 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A ++F + L L PT Sbjct: 75 K---VTFVRNVTDIDDKILDKAAA------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK----I 170 +PRAT H+ MI LIQ I+ +GH Y + + FD +S P+YG + +K + Sbjct: 126 EPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFDVASWPHYGELTHQKQTSEV 185 Query: 171 DE-----QKMGTRV----PEKYH----------KKNPADFILWKR---STPMEPGWESPW 208 DE +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 186 DEAAAVADRMGPSVDATGADKYNPVDPADVSPDKHDPRDFALWKAPKDTDPEDARWSTPF 245 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+C A +A W+H+ Sbjct: 246 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTCAAGY--PSAARWMHS 303 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 304 AWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALV 356 Query: 329 EAEILLSKWP----QTSTSKGIIDP------AV---------LSALYNDLNTVSAIQALH 369 EA+ + + + G + P AV ++A+ +D+N A A+ Sbjct: 357 EAQAAYDRVSNFIERAGVALGDLKPNRDEITAVPADDLPADFVAAMNDDVNVSGATAAIF 416 Query: 370 KLAR---------------ESTKNH--DLLPIFNASAHILGIEVCKEHLNKNIS------ 406 R E+ K + L A LG++ E Sbjct: 417 TAIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVSAGVAGGAAD 476 Query: 407 --------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 A+E L+ E+L K K F+ AD IR L G +ED G + Sbjct: 477 GTAESPEHAALEALIAEQLNARAEARKAKDFAKADQIRDALTEAGIAIED------GPQG 530 Query: 455 TRWKQK 460 + W K Sbjct: 531 STWSLK 536 >gi|209877248|ref|XP_002140066.1| cysteinyl-tRNA synthetase [Cryptosporidium muris RN66] gi|209555672|gb|EEA05717.1| cysteinyl-tRNA synthetase, putative [Cryptosporidium muris RN66] Length = 591 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 132/338 (39%), Positives = 191/338 (56%), Gaps = 23/338 (6%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY 68 N+L TEF ++ I Y CGPTVYD AH+G+AR + FD++ R+L Y+G V Sbjct: 44 NSLTAGKTEFIPVNGKRINWYACGPTVYDSAHLGHARTYVTFDIVRRILEDYFGYD-VYM 102 Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 V NITDIDDKII+R+ ++ D + + ++F D L P R + Sbjct: 103 VMNITDIDDKIIKRSIEQK-----RDNFLDLAREYEKEFFDDMHALNVKPPDIITRVSEF 157 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSFSRRKI-DEQKM----GTR 178 IP+++ I II G AYE + + FD ++ + YG + + DE K+ G Sbjct: 158 IPEILDYISTIIYRGFAYECDGSVYFDINAFRSKEGHFYGRMEPKSVADESKVLEGEGDL 217 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 KK+P DF LWK++ P EP W+SPWG+GRPGWHIECSAM+S+ LG DIH GG+ Sbjct: 218 GEHSKDKKSPLDFALWKKAKPGEPFWDSPWGKGRPGWHIECSAMASNTLGFPIDIHSGGI 277 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHH+NE+AQS + N ++H+G L++ G KMSKS NF TI ++L K++ Sbjct: 278 DLRFPHHDNELAQSEAHYDQPQWVNYFLHSGHLHIHGAKMSKSLKNFTTIRDVL--KEYS 335 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 R IR+ L+ + PI+F+ + + + + K Sbjct: 336 PRH-----IRMLFLLHKWDGPINFSPETSLKEAVAVDK 368 >gi|109947774|ref|YP_665002.1| cysteinyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba] gi|123362573|sp|Q17WH3|SYC_HELAH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109714995|emb|CAK00003.1| cysS [Helicobacter acinonychis str. Sheeba] Length = 465 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 237/463 (51%), Gaps = 54/463 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + P +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLAPKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVSMIETLLEKNIAYKVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFKTLALANTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L Sbjct: 231 VDLLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIID----P 349 +++ ++R +L HYR ++F + L ++ L K + S G ID Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGSLGNIDLNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGI---- 394 +L + +DLN A+ L + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSMNEKLDQNPKNKALKGEILANLKFVEELLGIGFKN 402 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 E + + ++ IEK ++ER + K F AD IR++L Sbjct: 403 PTEYFQLGVKESEKQEIEKKIEERKRAKEQKDFIKADSIREEL 445 >gi|210135076|ref|YP_002301515.1| cysteinyl-tRNA synthetase [Helicobacter pylori P12] gi|226710843|sp|B6JMA7|SYC_HELP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|210133044|gb|ACJ08035.1| cysteinyl-tRNA synthetase [Helicobacter pylori P12] Length = 465 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 233/461 (50%), Gaps = 50/461 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFEPLVQNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K Sbjct: 115 EYLDAMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDYGSLSMH--NSSVEFSRIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI V Sbjct: 345 LECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGVKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 405 AYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREEL 445 >gi|157165603|ref|YP_001466909.1| cysteinyl-tRNA synthetase [Campylobacter concisus 13826] gi|166200138|sp|A7ZDQ1|SYC_CAMC1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|112800284|gb|EAT97628.1| cysteinyl-tRNA synthetase [Campylobacter concisus 13826] Length = 464 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 232/464 (50%), Gaps = 54/464 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I++T +R+ EF I + +Y+CGPTVYD AH+G+A+ + FD+L R+L+ Sbjct: 1 MRIFDTSKREKVEFSPIKDGEVSIYLCGPTVYDDAHLGHAKSAVSFDLLRRVLK---ALG 57 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V + RN TDIDDKI+ + Q S+ IT+K + D L L P +P Sbjct: 58 CKVKFARNYTDIDDKILNKMAQTGQSLE------EITNKYIAHYESDMGALNVLDPDFKP 111 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT + +I I+ ++ G AY+ ++ I FDTS Y S S K + + RV Sbjct: 112 KATQCLEAIISYIKVLMDRGVAYKTSDGIYFDTSKDSGYFSIS-GKDNNTDLIARVASFG 170 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK------VFDIHGGG 237 K++ DF+LWK E +ESP+G+GRPGWH EC AM +L DIH GG Sbjct: 171 EKRDEKDFVLWKFD---EKWYESPFGKGRPGWHTECVAMIREFLSDKENDKFEIDIHAGG 227 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 +DL+FPHHENE +Q CA + + W+HNGF+ + KMSKS N + + L Sbjct: 228 IDLLFPHHENEASQCRCAYH-KNLSKYWMHNGFIKVNNEKMSKSLNNSFFVKDAL----- 281 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIID 348 ++ V+R +L +HYR +++ + L ++ L K Q + Sbjct: 282 --KNVHGEVLRYYLLTSHYRAHFNYSDEDLVASKKRLDKIYRLKKRVDGVQAGMANESFK 339 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS-----------AHILGIEVC 397 +L AL +DLN A+ ++ + + + + D P A ILGI + Sbjct: 340 SELLEALSDDLNASKALASVDEFVKTANERLDNNPKDKAYKAEVVANLELIGEILGIAIT 399 Query: 398 K--EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQL 435 E+ +S I+KL+ ER + K + F+ AD IR +L Sbjct: 400 NYVEYFQFGVSDEQKEHIQKLLDERAVAKKERNFARADEIRDEL 443 >gi|124002858|ref|ZP_01687710.1| cysteinyl-tRNA synthetase [Microscilla marina ATCC 23134] gi|123992086|gb|EAY31473.1| cysteinyl-tRNA synthetase [Microscilla marina ATCC 23134] Length = 568 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 173/293 (59%), Gaps = 24/293 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL F+ ++P + MYVCGPTVY+ HIGNARP + FDVL R L Y G K Sbjct: 14 LKIQNTLTNTKEVFEPLNPPFVGMYVCGPTVYNNPHIGNARPAVFFDVLSRYLTYL-GYK 72 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YVRNITD+ +D+I ++A+ E + + ++I T+K +++ L Sbjct: 73 -VRYVRNITDVGHLTGSENDGEDRISKQAKLEQ--LEPMEIVNIYTNK----YLELMDAL 125 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFSRRKID 171 P+ P AT HI + I +Q I+ G AYE+ + FD NYG S R ID Sbjct: 126 NVKRPSISPTATGHIVEQIDTVQKILDAGLAYESEGSVYFDVKKYNERHNYGELSGRVID 185 Query: 172 EQKMGTR--VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 E TR + + KKNP DF +WK+++P W SPWG G PGWH+ECS MS+ YLG Sbjct: 186 ELLANTRENLEGQSEKKNPMDFAIWKKASPEHLMRWNSPWGEGFPGWHLECSVMSTKYLG 245 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 + FDIHGGG+DL+FPHHE EIAQ+ A+ + W+HN L ++G KMSKS Sbjct: 246 EQFDIHGGGMDLMFPHHECEIAQAKAANGGKAPVKYWMHNNMLTIDGVKMSKS 298 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 50/205 (24%) Query: 284 NFITINELLETK-KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----------- 331 NFITI E+ + + +++ IRL +L HYR IDF+ + L +A+ Sbjct: 363 NFITIEEVFTGEHEILAQAYSPMTIRLFILQAHYRSTIDFSNKALLDAQKAYKKLMNSLR 422 Query: 332 -ILLSKWPQTSTS---------KGIIDPAVLSALYNDLNTVSAIQALHKLARE----STK 377 + L ++P + + G D A L ++ +D+NT A+ + + ++ T Sbjct: 423 VLKLMEYPTAAGTLNTKLDQQINGFCDNA-LRSMNDDMNTAKALAQIFNINKKINHFYTH 481 Query: 378 NHDLLPIFNAS------------AHILGIEVCKEHLNKNISIAIEKLVQERLILLK---- 421 D+ I A+ + G+ +E NK E L+Q L L K Sbjct: 482 PQDIATIEKATFDRMKSFFITFIVDVFGL--IEEKTNKQ-----EVLIQGMLDLYKDAKE 534 Query: 422 MKKFSSADYIRKQLESKGFILEDYK 446 K + D IR + G +++D K Sbjct: 535 NKDYDKVDQIRTTFKESGLLIKDLK 559 >gi|222823636|ref|YP_002575210.1| cysteinyl-tRNA synthetase [Campylobacter lari RM2100] gi|254781231|sp|B9KFX4|SYC_CAMLR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|222538858|gb|ACM63959.1| cysteinyl-tRNA synthetase [Campylobacter lari RM2100] Length = 460 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 137/383 (35%), Positives = 202/383 (52%), Gaps = 34/383 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 ++++ +K EF + +Y+CGPTVYD AH+G+AR + FD L R+L E V Sbjct: 3 FFDSVLKKKCEFIPHEAKKANIYLCGPTVYDDAHLGHARSSVCFDFLRRVLLASGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 + RN TDIDDKI+++ ++ S+ IT+ +++ +D L L P +P+AT Sbjct: 61 VFARNYTDIDDKILKKMQESGKSLKE------ITNFYIKRYEEDMQALNILEPDFKPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I QMI I+ ++ AY+ + I FDTS Y S+R +++ + +R+ E KK Sbjct: 115 AYIEQMITYIEKLLELNLAYKLEDGIYFDTSKDDKYFYISKRNLEDNQ--SRLEESVAKK 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 N +DF+LWK P + +G+GRPGWH EC M DIH GG+DL+FPHHE Sbjct: 173 NDSDFVLWKFDEKFYP---ASFGKGRPGWHTECVVMIESIFKDKLDIHAGGIDLLFPHHE 229 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NE Q C + E AN W+HNGF+ + G KMSKS GN + + L K F G V Sbjct: 230 NEACQCRCKNNHE-LANFWLHNGFVQINGEKMSKSLGNSFFLKDSL--KLFNGE-----V 281 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIIDPAV----LS 353 +R +L HYR ++ ++ L A+ L K+ + K II+ V L Sbjct: 282 LRFYLLSVHYRAHFNYALEDLQAAKKRLDKFYRLKKRLNLNAFIDEKTIIESKVSQNILD 341 Query: 354 ALYNDLNTVSAIQALHKLAREST 376 L +DLN A+ L + ES Sbjct: 342 VLNDDLNASKALALLDEFINESN 364 >gi|261211911|ref|ZP_05926198.1| cysteinyl-tRNA synthetase [Vibrio sp. RC341] gi|260839261|gb|EEX65893.1| cysteinyl-tRNA synthetase [Vibrio sp. RC341] Length = 364 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 194/366 (53%), Gaps = 38/366 (10%) Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT 177 P +PRAT +I ++I L++ +I G AY A+N +++F+ YG S++ +D+ + G Sbjct: 13 PDVEPRATAYIEEIIALVERLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLDQLQAGA 72 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 RV + K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG Sbjct: 73 RVDVEAAKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSSILGNHFDIHGGG 132 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 133 SDLQFPHHENEIAQSCCAHGTQYV-NTWMHSGMVMVDKEKMSKSLGNFFTIRDVL----- 186 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------ 351 + A +R ++ HYR ++++ + L +A L + PA Sbjct: 187 --GHYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYL 244 Query: 352 ---LSALYNDLNTVSAIQALHKLARE--STKNHDLL------PIFNASAHILGI------ 394 +A+ +D NT A L +ARE K+ DL + A ++GI Sbjct: 245 SRFTAAMNDDFNTPEAYSVLFDMAREINRLKSEDLTNASALGSLMRELADVIGILHQEPE 304 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + + IE L++ R K +++AD R +L G +LED G Sbjct: 305 SFFQGSAEDEDAEQIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPNG 358 Query: 455 TRWKQK 460 T W++K Sbjct: 359 TTWRRK 364 >gi|15790190|ref|NP_280014.1| hypothetical protein VNG1097G [Halobacterium sp. NRC-1] gi|169235919|ref|YP_001689119.1| cysteine--tRNA ligase [Halobacterium salinarum R1] gi|21264026|sp|Q9HQL9|SYC_HALSA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|10580644|gb|AAG19494.1| cysteinyl-tRNA synthetase [Halobacterium sp. NRC-1] gi|167726985|emb|CAP13771.1| cysteine--tRNA ligase [Halobacterium salinarum R1] Length = 494 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 155/508 (30%), Positives = 242/508 (47%), Gaps = 76/508 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGEKC 65 + NT + F+ DP N+ +Y CG TV D AH+G+AR + DV+ R L + YG Sbjct: 5 VSNTRSGEQEAFEPDDPENVLVYTCGLTVSDDAHLGHARLWVQSDVMTRWLSHAGYG--- 61 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V +V+N+TD+++KI+ R + + D + + + TQ + D L PR Sbjct: 62 VRHVQNVTDVNEKIVARVGAD----GLGDTEAAVAAHYTQSVIDDMRALNLARADVYPRV 117 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 + H+P++I LI +++ G+AYEA + FD YG+ S +++DE E+ K Sbjct: 118 SEHVPEIIDLIGDLVDAGYAYEAGGSVYFDVRRFEEYGALSGQQVDELDPQGPDAEQAEK 177 Query: 186 KNPADFILWK------------RSTPMEP-------GWESPWGRGRPGWHIECSAMSSHY 226 ++PADF LWK R + P W SPWG GRPGWHIECSAM+ + Sbjct: 178 RHPADFALWKAGGVSPDDANTHRDDELPPLDGERGQTWASPWGEGRPGWHIECSAMAMTH 237 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 L DIH GG DL+FPHHENEIAQS A E+ A+ W+H L +G KMS S GNF Sbjct: 238 LDDHIDIHVGGQDLVFPHHENEIAQSEAASG-ERFADHWLHVRLLETDGEKMSSSLGNFF 296 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE---------------AE 331 T++ + + V+R+ ++ T Y + ++ ++E A+ Sbjct: 297 TVSNAVAERG-------PNVVRMLLVSTSYTQRQTYSEATVSEATQRWERLQRAHERAAD 349 Query: 332 ILLSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAIQALHKLARESTKN------ 378 + S + + AV +A+ D NT +A+ AL +LA ++ Sbjct: 350 AIDSVAAHAKPADDALRTAVADARGEFAAAMRADFNTRAAVSALLELASAVNRHVDGTDT 409 Query: 379 ------HDLLPIFNA-SAHILGIEVCKEHLNKNISIA---IEKLVQERLILLKMKKFSSA 428 HD + F +LG++ +S+A I+ ++ R + A Sbjct: 410 YDYQGLHDAVDAFETLGGDVLGLQFDDGAGEDAVSLADDVIDLVLDVREQERTAGNYERA 469 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTR 456 D +R +LE+ G +ED D+G + R Sbjct: 470 DDLRDRLEALGVSVED---TDDGATVRR 494 >gi|302834082|ref|XP_002948604.1| hypothetical protein VOLCADRAFT_58337 [Volvox carteri f. nagariensis] gi|300266291|gb|EFJ50479.1| hypothetical protein VOLCADRAFT_58337 [Volvox carteri f. nagariensis] Length = 509 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 170/507 (33%), Positives = 248/507 (48%), Gaps = 92/507 (18%) Query: 1 MKKKIKIYNTLERKITEFQA-IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 ++ ++ +NT+ + F+ + + MYVCG TVYD++HIG+AR + FDVLYR L Sbjct: 16 LRGRVAFFNTMSKSKELFRPRLADGRVSMYVCGVTVYDYSHIGHARVYVAFDVLYRFLTA 75 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 G V YVRN TDIDDKII RA+Q S +T + ++F +D L L P Sbjct: 76 ACGYD-VQYVRNFTDIDDKIIARAQQSGVD------PSELTERFIREFNQDMAALNVLTP 128 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 T +PRAT +PQMI I I+ HGHAY ++ FD +S+ YG S R +++ + G R Sbjct: 129 TLEPRATAFVPQMISTITAIMQHGHAYAVEGGDVFFDVTSLEGYGRLSGRALEDNRAGER 188 Query: 179 VPEKYHKKNPADFIL-------WKRSTP----MEPGWESPWGRGRPGWHIECSAMSSHYL 227 V K++PADF L R P + GW W R C +S +L Sbjct: 189 VAVDGRKRSPADFALILVCLGGTGRDGPPGIVIFGGWGFSWFR--------CFRAASGFL 240 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCA----DRIEKTANI---WIHNGFLNLEGRKMSK 280 + G DL+FPHHENE+AQS A D++ + W+HNGF+N++ KMSK Sbjct: 241 VG-WPQFLRGRDLVFPHHENELAQSQAACGYPDQLHNGTDFVRYWLHNGFVNVDSEKMSK 299 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 S GNF TI ++L S+ +R +L YR P++++ + L EA S+ Sbjct: 300 SLGNFFTIRDVLS-------SYHPLALRWFLLAAQYRAPLNYSDKGLEEAS---SRLYYV 349 Query: 341 STSKGIIDPA-----------------VLSALYNDLNTVSAIQALHKLAR---------E 374 ++ ++PA VLSAL +DLNT +A+ AL R Sbjct: 350 IQARADVEPAATSSSSSTSSGAVLVSEVLSALADDLNTPAAVGALSGPLRTINDLMTTKA 409 Query: 375 STKNHDLLPIFNASAHI--------LGIEVCK--------EHLNKNISIAIEKLVQERLI 418 K D L + A H+ LG+E E + + +E+L+Q LI Sbjct: 410 GRKRPDRLAVL-AQLHVAMGVVMELLGMEPNSGTKQQPQLEGSLEGAAAGLEQLLQ--LI 466 Query: 419 LLKMKK-FSSADYIRKQLESKGFILED 444 + K F+ +D IR +L S+G +L D Sbjct: 467 QARQAKDFARSDAIRLELASRGILLLD 493 >gi|317011097|gb|ADU84844.1| cysteinyl-tRNA synthetase [Helicobacter pylori SouthAfrica7] Length = 465 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 156/461 (33%), Positives = 233/461 (50%), Gaps = 50/461 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K Sbjct: 115 EYLDAMVRMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG+D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGVD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ C +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCTFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIID----PAV 351 +++ ++R +L HYR ++F + L ++ L K + S G ID + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGSLGNIDLNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGI------ 394 L + +DLN A+ L + + D +L +LGI Sbjct: 345 LECMQDDLNISKALSVLESMLSSMNEKLDQNPKNKALKGEILANLKFVEELLGIGFKNPT 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 E + +N++ IEK ++ER + K F AD IR++L Sbjct: 405 EYFQLGVNESEKQEIEKKIEERKRAKEQKDFMKADSIREEL 445 >gi|189409152|ref|NP_077210.1| probable cysteinyl-tRNA synthetase, mitochondrial [Mus musculus] gi|148690118|gb|EDL22065.1| mCG11180, isoform CRA_a [Mus musculus] Length = 552 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 210/406 (51%), Gaps = 55/406 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 149 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPA 204 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ +DF LWK + P E W SPWG GRPGWHIECS M+S G DIH GG+DL Sbjct: 205 GDSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDL 264 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + ++ N ++H+G L+++G KMSKS N+ITI + L+T Sbjct: 265 AFPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKT---- 320 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------------------- 336 + V RL L T+YR I+++ L EA+ LL Sbjct: 321 ---FSPDVFRLFCLRTNYRSAIEYSDSTLVEAKHLLLGLASFVEDARAYVKGQLTCGPVE 377 Query: 337 ----WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 W + +++K AV +AL ND +T A+ + L + + Sbjct: 378 EDVLWERLTSTK----KAVKAALANDFDTPRAVNTILDLVHHANRQ 419 >gi|46190761|ref|ZP_00121063.2| COG0215: Cysteinyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|189439911|ref|YP_001954992.1| cysteinyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|227545810|ref|ZP_03975859.1| cysteine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133327|ref|YP_004000666.1| cyss [Bifidobacterium longum subsp. longum BBMN68] gi|317482007|ref|ZP_07941032.1| tRNA synthetase class I catalytic domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322690503|ref|YP_004220073.1| cysteinyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|189428346|gb|ACD98494.1| Cysteinyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|227213926|gb|EEI81765.1| cysteine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517397|emb|CBK71013.1| cysteinyl-tRNA synthetase [Bifidobacterium longum subsp. longum F8] gi|311772544|gb|ADQ02032.1| CysS [Bifidobacterium longum subsp. longum BBMN68] gi|316916574|gb|EFV37971.1| tRNA synthetase class I catalytic domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455359|dbj|BAJ65981.1| cysteinyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM 1217] Length = 549 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 169/545 (31%), Positives = 251/545 (46%), Gaps = 111/545 (20%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 29 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 88 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+ +A ++F + L L PT Sbjct: 89 ---KVTFVRNVTDIDDKILVKAAA------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 139 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK----I 170 +PRAT H+ MI LIQ I+ +GH Y + + FD +S P+YG + +K + Sbjct: 140 EPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFDVASWPHYGELTHQKQTSEV 199 Query: 171 DE-----QKMGTRV----PEKYH----------KKNPADFILWKR---STPMEPGWESPW 208 DE +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 200 DEAAAVADRMGPSVDATGADKYNPVDPADASPDKHDPRDFALWKAPKDTDPEDARWSTPF 259 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ Sbjct: 260 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTRAAGY--PSAARWMHS 317 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 318 AWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALV 370 Query: 329 EAE--------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHK 370 EA+ + L P T+ S + ++A+ +D+N A A+ Sbjct: 371 EAQAAYDRVSNFIERAGVALGGQPSREEVTAVSADDLPADFVAAMNDDVNVSGATAAIFT 430 Query: 371 LAR---------------ESTKNH--DLLPIFNASAHILGIEVCKEHLNKNIS------- 406 R E+ K + L A LG++ E + Sbjct: 431 AIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVSAGAAGGAADG 490 Query: 407 -------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 A+E L+ E+L K K F+ AD IR L G +ED G + + Sbjct: 491 TAESPEHAALEALIAEQLNARAEARKAKDFAKADQIRDALTEAGIAIED------GPQGS 544 Query: 456 RWKQK 460 W K Sbjct: 545 TWSLK 549 >gi|311063769|ref|YP_003970494.1| cysteinyl-trna synthetase CysS [Bifidobacterium bifidum PRL2010] gi|310866088|gb|ADP35457.1| CysS Cysteinyl-tRNA synthetase [Bifidobacterium bifidum PRL2010] Length = 540 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 163/524 (31%), Positives = 245/524 (46%), Gaps = 102/524 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 +K+Y+T ++ F I P + +YVCG TV HIG+ R + FDV+ R +LR Y Sbjct: 25 LKLYDTASHTVSRFTPIKPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWMLRLGY-- 82 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT+VRN+TDIDDKI+++A ++F + L L PT++P Sbjct: 83 -QVTFVRNVTDIDDKILDKAAAAGQQWWARAYF------YEREFTQAYDTLGVLPPTYEP 135 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDEQK-- 174 RAT H+ MI LI+ II +GH Y + + FD +S P+YG + +K + Sbjct: 136 RATGHMIDMIDLIRRIIDNGHGYVVYDADGKPTGNVYFDVASWPHYGELTHQKQGAAEAD 195 Query: 175 --------MGTRVP----EKYH----------KKNPADFILWKRSTPMEPG---WESPWG 209 MG V +KY+ K +P DF LWK P +P W +P+G Sbjct: 196 EAAAVADLMGPSVDAAGDDKYNPIDPADASPDKHDPRDFALWKAPKPTDPQDARWSTPFG 255 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ ++A W+H+ Sbjct: 256 VGRPGWHIECSAMSHRYLDGMFDIHGGGLDLRFPHHENEMAQTRAVGY--ESAARWMHSA 313 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L E Sbjct: 314 WVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALVE 366 Query: 330 AE--------------ILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQALHKL 371 A+ + L + P+ + G+ + +SA+ +D+N A A+ Sbjct: 367 AQAAYERIMNFIERAGVALGEQPERAEIAGVSADDLPADFVSAMNDDVNVSGATAAIFTA 426 Query: 372 ARES----TKNHDLLPIFNASAHI-------------LGIEVCKE--------------H 400 R +K D A A + LG++ E Sbjct: 427 IRNGNTLLSKLDDRADGDAARAEVRSALVAVRAMLDALGLDPLAEPWAGAAGADGNGESR 486 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + I + + R K + F+ AD IR L + G +ED Sbjct: 487 EHDVLDALITEQLNARAEARKSRDFAKADAIRDALGAAGIAIED 530 >gi|149730502|ref|XP_001496717.1| PREDICTED: similar to Cysteinyl-tRNA synthetase 2, mitochondrial (putative) [Equus caballus] Length = 559 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 145/398 (36%), Positives = 206/398 (51%), Gaps = 54/398 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+ R+ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 48 VKVYNSRTRRKDPLIVGSADATSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 105 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C + V ITD+DDKII RAR+ +N + + + + + F +D L L PT Sbjct: 106 CNIIMVMGITDVDDKIIRRARE------MNVSPTSLANLYEEDFKQDMAALKILPPTVYL 159 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II GHAY A + FD S + YG + +G P Sbjct: 160 RVTENIPQIISFIEGIIAKGHAYSTAKGNVYFDLQSRGDKYGKLV--GVAPGPVGE--PV 215 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ +DF LWK + P E W SPWG GRPGWHIECS +SS G DIH GG+DL Sbjct: 216 ESDKRHASDFALWKAAKPQEMFWASPWGNGRPGWHIECSTISSLVFGSQLDIHSGGIDLA 275 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + ++ N ++H+G L+++G+ KMSKS N+ITI + L+T Sbjct: 276 FPHHENEIAQCEVFHQCKQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKTAS--- 332 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------- 336 V RL + + YR ID++ + EA+ LL Sbjct: 333 ----PDVFRLFCMRSSYRSAIDYSDGAVLEAKHLLLAATAFVEDARAYMRGQLACGPIGE 388 Query: 337 ---WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL 371 W + S +KG AV +AL +D +T A+ A+ L Sbjct: 389 DVLWERLSHTKG----AVKAALADDFDTPGAVDAVMDL 422 >gi|12845041|dbj|BAB26596.1| unnamed protein product [Mus musculus] Length = 552 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/336 (39%), Positives = 189/336 (56%), Gaps = 25/336 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 149 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPA 204 Query: 182 -KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++ +DF LWK + P E W SPWG GRPGWHIECS M+S G DIH GG+DL Sbjct: 205 GDSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDL 264 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + ++ N ++H+G L+++G KMSKS N+ITI + L+T Sbjct: 265 AFPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDFLKT---- 320 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 + V RL L T+YR I+++ L EA+ LL Sbjct: 321 ---FSPDVFRLFCLRTNYRSAIEYSDSTLVEAKHLL 353 >gi|307637574|gb|ADN80024.1| Cysteinyl-tRNA synthetase [Helicobacter pylori 908] gi|325996165|gb|ADZ51570.1| Cysteinyl-tRNA synthetase [Helicobacter pylori 2018] gi|325997761|gb|ADZ49969.1| Cysteinyl-tRNA synthetase [Helicobacter pylori 2017] Length = 465 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 232/461 (50%), Gaps = 50/461 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFEPLVKNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K Sbjct: 115 EYLDAMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDYGSLSMH--NSSVEFSRIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGTD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 405 AYFQLGVSESEKQEIESKIEERKRAKEQKDFLKADSIREEL 445 >gi|332031259|gb|EGI70793.1| Cysteinyl-tRNA synthetase, mitochondrial [Acromyrmex echinatior] Length = 518 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 161/509 (31%), Positives = 240/509 (47%), Gaps = 72/509 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++ IYN + + + ++ Y+CGPTVYD AHIG+A I D++ R+L Y+ Sbjct: 31 QTEVSIYNLITKCKVPLILKTQNILKWYICGPTVYDSAHIGHATTYIKSDIIRRILSDYF 90 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V V ITDIDDKII R+ + ++ +F D +L P Sbjct: 91 NID-VLLVMGITDIDDKIIRRSNESGKDFKT------LSRHFETEFFADMNKLNIREPYL 143 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 + R T++IPQ+I I+ +I G Y A + + F+TS YG S +D V Sbjct: 144 RCRVTDYIPQIIQFIEKLIAKGDGYVAPDGSVYFNTSKYNKYGKLSTLVLDTVNDQNFVG 203 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+ DF LWK + EP W+SPW GRPGWHIECSA++S G DIH GG+DL Sbjct: 204 ----KKSALDFALWKAAKENEPSWKSPWSYGRPGWHIECSAIASTVFGNSIDIHSGGIDL 259 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR-KMSKSNGNFITINELLETKKFGG 299 FPHHENE AQSCC +++ N W+H G L+L+G KMSKS N I+I + LE Sbjct: 260 AFPHHENEEAQSCCYHDVDQWVNYWLHCGHLSLKGDVKMSKSLKNTISIQDYLE------ 313 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDP 349 ++ A +R+ L++HYR I+F+ + + A + K + G ID Sbjct: 314 -NYSANNLRMLCLLSHYRNGIEFSDEVIQTAMSVTKKIDNFINDCDNYVAGKFKTGEIDE 372 Query: 350 AVL------------SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC 397 +L SAL +D +T A+ A+ L K + + S ++ + Sbjct: 373 NLLYTTLHDTRSKVYSALADDFDTSKAMHAIINLVGIGNKMFHQDNVTSRSNNVSVVAAV 432 Query: 398 KEHLNK-----NISIAIEKLVQERLI------LLKMKK----------------FSSADY 430 +L+ IS + + V+ R I L +K D Sbjct: 433 SNYLSNILSKFGISRSTKSTVENRQIEDIIDHFLNFRKTVRIRALEQNPKDTILLKECDN 492 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +RK L + G +++D KN ++ WKQ Sbjct: 493 VRKCLYTCGIMVKDQKNDNSSW---SWKQ 518 >gi|119025230|ref|YP_909075.1| cysteinyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703] gi|118764814|dbj|BAF38993.1| cysteinyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703] Length = 543 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 167/524 (31%), Positives = 246/524 (46%), Gaps = 103/524 (19%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +Y+T ++ F I P + +Y CG TV HIG+ R + FDV+ R G K V Sbjct: 27 LYDTASHAVSSFTPIKPGQVGIYACGATVQSSPHIGHIRAAVAFDVVRRWFERL-GYK-V 84 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+VRN+TDIDDKI+++A I ++F + ++L PT++PRAT Sbjct: 85 TFVRNVTDIDDKILDKAAAAGQQWWERAYIY------EREFTEAYSKLGVEPPTYEPRAT 138 Query: 127 NHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDE------- 172 H+ MI LI+ II +GHAY + FD +S P+YG + +K Sbjct: 139 GHMIDMIDLIKKIIDNGHAYVVRDADGNPTGNVYFDVASWPHYGELTHQKQTAVSDAASE 198 Query: 173 --QKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRGRP 213 MG V +KY+ K +P DF LWK S P++ W +P+G GRP Sbjct: 199 VTDAMGPSVDNAGNDKYNPVDPADMSPDKHDPRDFALWKAPKDSDPLDARWNTPFGTGRP 258 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ ++ Sbjct: 259 GWHIECSAMSHRYLKDMFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSAWVTA 316 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-- 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EA+ Sbjct: 317 KGEKMSKSLGNGLSVPAVLAEHS----AW---VVRYALGSVQYRSMLEWSDQTLAEAQSA 369 Query: 332 ------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQA-------- 367 + + P + S + ++A+ +D+N A A Sbjct: 370 YDRVANFIERAGAAVGEQPSREEIMAISADALPADFVAAMNDDINVSGASAAIFTAIRSG 429 Query: 368 ---LHKLARESTKN------HDLLPIFNASAHILGIEVCKEHLNKNISI----------- 407 L KLA + + + L A LG++ E + + Sbjct: 430 NTLLSKLADRADSDVAKAEVREALVNVRAMLDTLGLDPLAEPWVSDGAAGGAAGAGADSA 489 Query: 408 ---AIEKLVQERLI----LLKMKKFSSADYIRKQLESKGFILED 444 A++KLV E+L K K F+ AD IR L + G +ED Sbjct: 490 EHDALDKLVSEQLAERAEARKAKDFARADAIRDALGAAGIAIED 533 >gi|162453596|ref|YP_001615963.1| hypothetical protein sce5320 [Sorangium cellulosum 'So ce 56'] gi|161164178|emb|CAN95483.1| cysS2 [Sorangium cellulosum 'So ce 56'] Length = 512 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 164/521 (31%), Positives = 242/521 (46%), Gaps = 102/521 (19%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK F + P +R+Y CG TVY HIG+AR +DV R L Y G Sbjct: 3 LKVHNTLTRKKEPFVSARPKVVRIYTCGLTVYAPMHIGHARTYCFWDVFRRYLEYR-GYH 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 ++ + N TDIDD+I++RA + ++ + + +N F +D +L R Sbjct: 62 VLSII-NYTDIDDRIMQRASEREGAVDVAE-------RNIAAFRRDCRKLHIKDYAVYTR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT+ + + + + + +I GHAY N E+ ++ + YG S RK+DEQ++G RV E Sbjct: 114 ATDFVDEQVDMAKRLIEKGHAYTVNGEVFYEVGTWAPYGELSGRKVDEQEVGASGRVEED 173 Query: 183 Y-HKKNPADFILWKRSTPMEPGW---ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++PADF LWK + +P W E W GRPGWHIECSAMS+ LG FD+HGGG+ Sbjct: 174 FARKRHPADFSLWKPTGAGQPSWRTGEEGWPTGRPGWHIECSAMSTALLGDHFDVHGGGI 233 Query: 239 DLIFPHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 D +FPHHENEIAQS C W+H L+L+ KMSKS GN I+I ELL Sbjct: 234 DNMFPHHENEIAQSEPLCG---RPWVRYWLHPEHLDLKDMKMSKSLGNVISIEELLSRHG 290 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE-----------AEILLSKWPQTSTSKG 345 W + HYR + F + L + A +L K + ++ Sbjct: 291 HDEARW-------FFVTQHYRCKLPFGWELLQQSAQGYARIKKLATVLAGK--LSGATEA 341 Query: 346 IIDPAV----------------------------------LSALYNDLNTVSA------- 364 + P + A+ +DLNT +A Sbjct: 342 PLAPGAYASQRPEEERFPRMRHHYVHGQFGEHTERFIARFIEAMDDDLNTPNAVAAFFDY 401 Query: 365 IQALHKLARESTKNH-DLLPIFNASAH---ILGIEVCKEHLNKNI--------------- 405 + AL+ E ++ LL ++ A + G+E+ + L + Sbjct: 402 VSALYSAGIEQCEDRPSLLAVYRAIVRHLAVFGVEIAEPALYPELVPDYALAPAEGAAGR 461 Query: 406 --SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 AI++L+ R K K F+ AD IR L G +LED Sbjct: 462 GGDAAIDRLIAMRQEARKAKDFAKADAIRNLLIEAGVVLED 502 >gi|154486613|ref|ZP_02028020.1| hypothetical protein BIFADO_00430 [Bifidobacterium adolescentis L2-32] gi|154084476|gb|EDN83521.1| hypothetical protein BIFADO_00430 [Bifidobacterium adolescentis L2-32] Length = 553 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 167/524 (31%), Positives = 246/524 (46%), Gaps = 103/524 (19%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +Y+T ++ F I P + +YVCG TV HIG+ R + FDV+ R G K V Sbjct: 37 LYDTASHAVSSFTPIKPGQVGIYVCGATVQSSPHIGHIRAAVAFDVVRRWFERL-GYK-V 94 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+VRN+TDIDDKI+++A I ++F + ++L PT++PRAT Sbjct: 95 TFVRNVTDIDDKILDKAAAAGQQWWERAYIY------EREFTEAYSKLGVEPPTYEPRAT 148 Query: 127 NHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDE------- 172 H+ MI LI+ II +GH Y + FD +S P+YG + +K Sbjct: 149 GHMIDMIDLIKKIIDNGHGYVVRDADGNPTGNVYFDVASWPHYGELTHQKQTAVSDAASE 208 Query: 173 --QKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPWGRGRP 213 MG V +KY+ K +P DF LWK S P++ W +P+G GRP Sbjct: 209 VTDAMGPSVDNAGNDKYNPVDPADMSPDKHDPRDFALWKAPKDSDPLDARWNTPFGTGRP 268 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAMS YL +FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ ++ Sbjct: 269 GWHIECSAMSHRYLKDMFDIHGGGLDLRFPHHENEMAQTRAAGY--DSAARWMHSAWVTA 326 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-- 331 +G KMSKS GN +++ +L +W V+R A+ YR ++++ Q L EA+ Sbjct: 327 KGEKMSKSLGNGLSVPAVLAEHS----AW---VVRYALGSVQYRSMLEWSDQTLAEAQSA 379 Query: 332 ------------ILLSKWPQ----TSTSKGIIDPAVLSALYNDLNTVSAIQA-------- 367 + + P + S + ++A+ +D+N A A Sbjct: 380 YDRVANFIERAGAAVGEQPSREEIMAISADALPADFVAAMNDDINVSGASAAIFTAIRSG 439 Query: 368 ---LHKLARESTKN------HDLLPIFNASAHILGIEVCKEHLNKNISI----------- 407 L KLA + + + L A LG++ E + + Sbjct: 440 NTLLSKLADRADSDVAKAEVREALVNVRAMLDTLGLDPLAEPWVSDGAAGGAAGAGADSA 499 Query: 408 ---AIEKLVQERLI----LLKMKKFSSADYIRKQLESKGFILED 444 A++KLV E+L K K F+ AD IR L + G +ED Sbjct: 500 EHDALDKLVSEQLAERAEARKAKDFARADAIRDALGAAGIAIED 543 >gi|315607013|ref|ZP_07882019.1| cysteine--tRNA ligase [Prevotella buccae ATCC 33574] gi|315251394|gb|EFU31377.1| cysteine--tRNA ligase [Prevotella buccae ATCC 33574] Length = 515 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 171/525 (32%), Positives = 246/525 (46%), Gaps = 96/525 (18%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++ + IYNTL R F+ + N+ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MEQTLLIYNTLSRSKERFEPLHAPNVGMYVCGPTVYGDPHLGHARPAITFDILFRYLKHL 60 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD+ DDKI ++AR E P+ + T ++ Sbjct: 61 -GYK-VRYVRNITDVGHMEHDADDGDDKIEKKARLEQLE-PME-----VAQYYTNRYHTA 112 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSR 167 L L P+ +P+AT HI + L++ I+ +G+AYE+N I FD YG S Sbjct: 113 MNALNVLPPSIEPQATGHIIEQEELVKQILDNGYAYESNGSIYFDIEKYNKDHKYGILSG 172 Query: 168 RK----IDEQKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWG------------- 209 R ++E + V EK H+ ADF LWKR+ P W S + Sbjct: 173 RSLENIVNESRSLAGVGEKRHQ---ADFALWKRAMPEHIMRWHSVFKYKTGSYYENKKAK 229 Query: 210 ------RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 G PGWH EC+AM YLG FDIHGGG+DL+FPHHE EIAQ+ A + ++ Sbjct: 230 YRQITIEGFPGWHCECTAMGRKYLGNHFDIHGGGMDLVFPHHECEIAQA-VASQGDQMVR 288 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDF 322 W+HN + + G+KM KS GNFIT+ + +P+ IR +L HYR +DF Sbjct: 289 YWMHNNMITINGQKMGKSLGNFITLEQFFTGSHDSLEQAYSPMTIRFFILSAHYRSTVDF 348 Query: 323 T----------VQRLTEAEILLSKWPQTSTSKGIIDPAV-------LSALYNDLNTVSAI 365 + ++RL L + P + T + D V A+ +D T I Sbjct: 349 SNDALKASEKGLERLMNGLSDLDRVPVSDTCDEVTDRFVKQLRQRCYDAMNDDFQTQLVI 408 Query: 366 QALHKLARESTKNHDLLPIFNASAHI-------------------LGIEVCKEHLNKNIS 406 L + H + + + AHI LG++ N+ Sbjct: 409 SYLFEAC------HVVNTLLDHKAHICADCLKELAETMRLFAFDLLGLKPENGDNNEARE 462 Query: 407 IAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILEDYKN 447 A K+V L L K ++++D IR L GF ++D K+ Sbjct: 463 EAYGKVVDMVLSLRAKAKADKDWTTSDKIRDALADAGFEVKDTKD 507 >gi|315586833|gb|ADU41214.1| cysteine--tRNA ligase [Helicobacter pylori 35A] Length = 465 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ MI +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMIGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IEK ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIEKKIEERKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|208434794|ref|YP_002266460.1| cysteinyl-tRNA synthetase [Helicobacter pylori G27] gi|226710844|sp|B5Z7P5|SYC_HELPG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|208432723|gb|ACI27594.1| cysteinyl-tRNA synthetase [Helicobacter pylori G27] Length = 465 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 232/462 (50%), Gaps = 52/462 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E N +I ++S + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKAFKE------NKSIQELSSVYIESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMG-TRVPEKYH 184 ++ M+ +I+ ++ AY +N +I DT+ +YGS S + M +R+ Sbjct: 115 EYLDAMVRMIETLLEKNIAYRVSNGDIYLDTTKDKDYGSLS---VHNSSMEFSRIGLVQE 171 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGA 231 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 232 DLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------ 284 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----A 350 +++ ++R +L HYR ++F + L ++ L K + S + G I+P Sbjct: 285 -KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVSGTLGGINPNFKKE 343 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKE 399 +L + +DLN A+ L + + + D +L +LGI Sbjct: 344 ILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDP 403 Query: 400 HLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 404 SAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREEL 445 >gi|108563291|ref|YP_627607.1| cysteinyl-tRNA synthetase [Helicobacter pylori HPAG1] gi|123373736|sp|Q1CSY9|SYC_HELPH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|107837064|gb|ABF84933.1| cysteinyl-tRNA synthetase [Helicobacter pylori HPAG1] Length = 465 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFEPLVKNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+++I+ ++ AY +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVHMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L Sbjct: 231 SDLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNVSKALSVLENMLSSTNEKLDQNPKNKALKGEILANLKFVEELLGIGFKD 402 Query: 399 EHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L ++ L D Sbjct: 403 PSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADRIREELLNRKIALMD 454 >gi|19922218|ref|NP_610930.1| CG8257 [Drosophila melanogaster] gi|7303228|gb|AAF58291.1| CG8257 [Drosophila melanogaster] gi|16183283|gb|AAL13681.1| GH24360p [Drosophila melanogaster] gi|220945642|gb|ACL85364.1| CG8257-PA [synthetic construct] gi|220955498|gb|ACL90292.1| CG8257-PA [synthetic construct] Length = 558 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 198/391 (50%), Gaps = 47/391 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYN R+ +P + Y CGPTVYD AH+G+A + D+L R+LR Y+ Sbjct: 48 INIYNHGLRQKVPLILRNPQMVTWYTCGPTVYDSAHLGHASTYVKVDILQRILRDYFKIN 107 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII+RA+ + +F +D RL AP + Sbjct: 108 LVTAM-NITDVDDKIIKRAQLAGLDW------QKMARAYEAEFRQDMLRLNVQAPDVRSH 160 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +P +I IQ +I AY +N + FD S NYG + E K+ Sbjct: 161 VTTTMPVIIQFIQQLIDGKQAYVTPDNSVYFDVSKSKNYGKLQNLGLSEDKLDP------ 214 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK R + EP W +PWG GRPGWHIECSA++ + G+ DIH GGLDL Sbjct: 215 IKRNTADFALWKARKSGSEPTWAAPWGGEGRPGWHIECSAIAGLFFGRQLDIHAGGLDLR 274 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + ++ N W+H G L++ G KMSKS GN I+++ELL Sbjct: 275 FPHHENEEAQCCARYKTDQWVNYWVHTGQLHMVGDREKMSKSLGNTISVSELL------- 327 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP 349 + + A R+A L+++YR + + T+QR + LS + Q ++D Sbjct: 328 KKYTADEFRMACLLSNYRNAMPYSDQLMVTARQTLQRFRNFQADLSAYTQFLKPVHLLDE 387 Query: 350 AVLSA------------LYNDLNTVSAIQAL 368 L A L +D +T AI L Sbjct: 388 GALKAQLTHTVTEFDNCLRDDFDTARAISVL 418 >gi|317180259|dbj|BAJ58045.1| cysteinyl-tRNA synthetase [Helicobacter pylori F32] Length = 465 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+++ +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFESLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ S+ +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSVQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALRGEILANLKFIEELLGIGFKN 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|298715268|emb|CBJ27917.1| Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 664 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 182/344 (52%), Gaps = 40/344 (11%) Query: 22 DPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 DPS ++ Y CGPTVYD AH+G+AR + DV+ R+L Y+ VTY ITD+DDKI Sbjct: 60 DPSTGMLKWYSCGPTVYDSAHLGHARTYVSLDVIRRVLTDYF-RFDVTYALGITDVDDKI 118 Query: 80 IERARQ----EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 I RAR+ E P ++ + ++ +QF++D + L P R T+HIP ++ Sbjct: 119 IARARENGLREWPE------VAEMAAEFERQFLEDMSDLGVRPPDALTRVTDHIPDIVAY 172 Query: 136 IQNIILHGHAYEANNEIIFDTSSIPN-YGSF----SRRKIDEQKMGTRVPEKYHKKNPAD 190 IQ I+ +G YEA + FD + YG S E++ G+ E K++ D Sbjct: 173 IQRILENGMGYEAAGGVYFDVEGMGGAYGKLGVKASSSTTPEEEGGS---ELRGKRSHKD 229 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK + EP WESP+GRGRPGWHIECSAM+ G D+H GG+DL FPHH NEIA Sbjct: 230 FALWKTAKADEPSWESPFGRGRPGWHIECSAMTHSLFGPNLDVHSGGVDLKFPHHTNEIA 289 Query: 251 QS---CCADRIEKTANI---------------WIHNGFLNLEGRKMSKSNGNFITINELL 292 Q C A WIH G LN+EG KMSKS NF+TI E L Sbjct: 290 QCEAHACGGVAATAAATGDGGVGGERKPWVRHWIHTGHLNIEGLKMSKSLKNFVTIREYL 349 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 E G+ A R+ LM Y + F+ R+ EA ++ + Sbjct: 350 EGHS-AGQEAAAEDFRMFCLMHKYSSNVTFSEDRMEEASVVRGR 392 >gi|261838269|gb|ACX98035.1| cysteinyl-tRNA synthetase [Helicobacter pylori 51] Length = 465 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 TDLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD+IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADHIREELLKQKIALMD 454 >gi|217034711|ref|ZP_03440113.1| hypothetical protein HP9810_896g8 [Helicobacter pylori 98-10] gi|216942824|gb|EEC22321.1| hypothetical protein HP9810_896g8 [Helicobacter pylori 98-10] Length = 465 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSGIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNVSKALSVLESMLSSTNEKLDQNSKNKALKGEILANLKFVEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|195149692|ref|XP_002015790.1| GL10829 [Drosophila persimilis] gi|194109637|gb|EDW31680.1| GL10829 [Drosophila persimilis] Length = 556 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 190/340 (55%), Gaps = 28/340 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYN R+ +P+ + Y CGPTVYD AH+G+A + D++ R+LR Y+ Sbjct: 48 IRIYNNGMRRKVPLILRNPNMVTWYTCGPTVYDSAHLGHASTYVKVDIIQRILRNYFNIN 107 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII +AR D + + + + F +D RL P + Sbjct: 108 LVTAM-NITDVDDKIIRKARDSGC-----DWLGMARTYEAE-FKQDMLRLNVQPPDIRTH 160 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK- 182 T+++P ++ I+ +I HAY +N + FD S P+YG Q++G EK Sbjct: 161 VTSNMPAIVQFIEELINDSHAYVTEDNSVYFDVSKYPHYGKL-------QRLGMSTEEKS 213 Query: 183 -YHKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K+N ADF LWK + EP W +PWG GRPGWHIECSA++ + G D H GGLD Sbjct: 214 DLFKQNSADFALWKAKKEADEPSWAAPWGGEGRPGWHIECSAIAGFFFGHKLDFHAGGLD 273 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKF 297 L FPHHENE AQ C + ++ N W+H G L + G +KMSKS GN I+I+E+L+ Sbjct: 274 LRFPHHENEEAQCCVRYQTDQWVNYWMHTGQLYIAGDEQKMSKSLGNTISISEMLQ---- 329 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 S+ + R+A L+++YR + ++ Q + A L ++ Sbjct: 330 ---SYTSDEFRMACLLSNYRNAMPYSEQLMLTARQTLQRF 366 >gi|322369387|ref|ZP_08043952.1| cysteinyl-tRNA synthetase [Haladaptatus paucihalophilus DX253] gi|320551119|gb|EFW92768.1| cysteinyl-tRNA synthetase [Haladaptatus paucihalophilus DX253] Length = 495 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 153/502 (30%), Positives = 237/502 (47%), Gaps = 74/502 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + NTL + F+ DP ++ +Y CG TV DFAH+G+AR I DV++R L + + V Sbjct: 5 VTNTLTGEREPFEPGDPDSVLLYYCGLTVSDFAHLGHARGWIHTDVMHRWLEHLGYD--V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +V N TD+++KI R ++ + D + + Q ++D L PR + Sbjct: 63 HHVENFTDVNEKITARVGED----DLGDDEADVARTFITQVIRDMRDLNLKRADVYPRVS 118 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 H+P++ LI+ ++ G+AYE+N + FD ++ +YG S ++++E + E+ K+ Sbjct: 119 EHLPEITDLIETLVEKGYAYESNGSVYFDVTTFEDYGKLSNQRVEEMEAQGEGDERGEKR 178 Query: 187 NPADFILWKR--------------------STPMEPGWESPWGRGRPGWHIECSAMSSHY 226 +P DF LWK S P W+SPWG GRPGWHIECSAMS + Sbjct: 179 HPGDFALWKADGVSEGAVEEHRDPDTEYAVSHPSGQTWDSPWGEGRPGWHIECSAMSMEH 238 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ DIH GG DL+FPHHENEIAQS A + A W+H L EG KMS S GN+ Sbjct: 239 LGETIDIHVGGQDLVFPHHENEIAQSEAA-TGHQFARYWLHVRLLETEGEKMSSSLGNYS 297 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---------------E 331 T+ + + G A +R+ +L T Y F+ + L EA E Sbjct: 298 TVRGAI--SEIG-----ANAVRMFLLSTSYANRQTFSDETLNEAVERWDRLSDGYDRAVE 350 Query: 332 ILLSKWPQTSTSKGIIDPAVL-------SALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +T + AV A+ +D NT A+ AL L ++ D Sbjct: 351 ALDGPDARTKVEDDELRQAVTETREEFADAMNDDFNTRRALAALLDLVTAVNRHADAHEE 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAI-----------EKLVQERLILLKMKK----FSSAD 429 ++ +E +E + ++ E LV+ L L + ++ + AD Sbjct: 411 YDYDGLKSAVETFEELGGDVLGFSLGGEAGGDVRLAEDLVELVLDLREGERDAGNYDRAD 470 Query: 430 YIRKQLESKGFILEDYKNPDNG 451 +R L++ G D ++ D+G Sbjct: 471 ALRDDLQALGV---DVQDSDSG 489 >gi|308183038|ref|YP_003927165.1| cysteinyl-tRNA synthetase [Helicobacter pylori PeCan4] gi|308065223|gb|ADO07115.1| cysteinyl-tRNA synthetase [Helicobacter pylori PeCan4] Length = 465 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANSPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFVEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|281202238|gb|EFA76443.1| cysteinyl-tRNA synthetase [Polysphondylium pallidum PN500] Length = 633 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 194/333 (58%), Gaps = 22/333 (6%) Query: 4 KIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++IYN+L F I ++ Y+CGPTVYD +H+G+AR I FD++ R+++ Y G Sbjct: 29 ELQIYNSLTSSKVPFTPISGGKSVSWYICGPTVYDASHMGHARSYISFDIIRRIMKDYLG 88 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y+ NITDIDDKII R+R++ + + ++ K F D L L P Sbjct: 89 YD-VQYIMNITDIDDKIIIRSREQGITH------TELSRKWENSFFDDLKALNVLPPDAL 141 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS---IPNYGSFSRRKIDEQKMGTR- 178 R T ++P+++ ++ II +G AYE+N + FDT + + YG + +K+ + Sbjct: 142 TRVTEYVPEIVTFVEKIIANGFAYESNGSVYFDTEAYMKVHEYGKLEPSSVGNEKLNSEG 201 Query: 179 ---VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + K+N DF LWK+S EP W SPWG GRPGWHIECSAM+S LG DIH Sbjct: 202 EGALSAGSDKRNNNDFALWKKSKEGEPKWNSPWGEGRPGWHIECSAMASDILGANIDIHS 261 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DL FPHH+NEIAQS ++ N +IH+G L ++G KMSKS NFITI + L K Sbjct: 262 GGEDLKFPHHDNEIAQSEAHYGCKQWINYFIHSGHLLIDGLKMSKSLKNFITIQDAL--K 319 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 K+ R IR+ L+ Y +P++++ + +T Sbjct: 320 KYTARQ-----IRMLFLIHRYDKPMNYSTESMT 347 >gi|317177679|dbj|BAJ55468.1| cysteinyl-tRNA synthetase [Helicobacter pylori F16] Length = 465 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 238/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSGIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGIIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER K K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKKQKDFLKADRIREELLKQKIALMD 454 >gi|15611885|ref|NP_223536.1| cysteinyl-tRNA synthetase [Helicobacter pylori J99] gi|6831687|sp|Q9ZKW6|SYC_HELPJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|4155389|gb|AAD06399.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99] Length = 465 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 234/470 (49%), Gaps = 50/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVHNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K Sbjct: 115 EYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSMHNSSVE--FSRIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGTD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L + L D Sbjct: 405 AYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLQQKIALMD 454 >gi|284931715|gb|ADC31653.1| Cysteinyl-tRNA synthetase [Mycoplasma gallisepticum str. F] Length = 435 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 207/384 (53%), Gaps = 36/384 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+TL + + ID + I +YVCGPTVYD HIGN RP++ FDVL RLL + K Sbjct: 1 MKLYDTLTKTNVD---IDANEINIYVCGPTVYDHIHIGNLRPIVTFDVLRRLLEH--SNK 55 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITDIDDKII +A++ +N + +T + T + + L P + Sbjct: 56 KVNFVHNITDIDDKIINQAQR------LNLSEEEVTKRYTSAYFEILDALNIKLPK-IVK 108 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + +I I+ I +AYE + +I FDT+ IP+YG S+RK+DEQ G RV + Sbjct: 109 VTDVMNGIIKYIEKIYDKQYAYELDGDIYFDTTRIPDYGVLSKRKLDEQISGIRVKSNEN 168 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECS-AMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK+ T W S +G GRPGWH EC+ + + K F IHGGG+DL+FP Sbjct: 169 KTSPNDFVLWKK-TVNGIKWNSKFGLGRPGWHTECAYIIDQEFKQKGFVIHGGGIDLVFP 227 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ + AN W+H G L ++ KMSKS NFI + L+E+ + Sbjct: 228 HHENENAQNLALHN-KNLANCWVHVGHLLIDNEKMSKSLNNFIYVKHLIESHNYRA---- 282 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------SKGIIDP 349 IR T + +P++F + A+ + K T S ++ Sbjct: 283 ---IRWVFYNTAHTQPLNFDGTIIKAAQKDVEKIISTVNRFRTFLIANKNNIPSSSLVCE 339 Query: 350 AVLSALYNDLNTVSAIQALHKLAR 373 AL+++LN +A + + L + Sbjct: 340 EFKKALFDNLNFANATKVIWDLIK 363 >gi|187919716|ref|YP_001888747.1| cysteinyl-tRNA synthetase [Burkholderia phytofirmans PsJN] gi|187718154|gb|ACD19377.1| cysteinyl-tRNA synthetase [Burkholderia phytofirmans PsJN] Length = 462 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 218/467 (46%), Gaps = 48/467 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R + EF I P ++ +Y CGPTVYD AHIGN R + DVL R L Sbjct: 3 LRLYDTWTRTVREFTPIHPDHVGLYCCGPTVYDHAHIGNLRTYVFEDVLRRAL--VLNGY 60 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V +V NITD+ D + E S ++ I + T F+ D L L P Sbjct: 61 NVRHVVNITDVGHLVSDADEGEDKMEKGSRRTGESAWAIAERYTAAFMNDWRALNLLEPA 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 RAT+HI + I I + +G Y + + FDTS +YG +R + + G RV Sbjct: 121 LWCRATDHIAEQIDFIAELERNGFTYRTADGVYFDTSRQDDYGYLARLDVAGLQAGKRVA 180 Query: 181 EKYHKKNPADFILWKRSTP-----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 K+ DF LWK S P ME W+SPWGRG PGWHIECSAMS+ YL FDIH Sbjct: 181 PG-EKQRATDFALWKFSPPGATRQME--WDSPWGRGFPGWHIECSAMSAKYLSPWFDIHC 237 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG D I HH NEIAQ+ A + AN W+H FL L+ KMSKS G+F+ + L E Sbjct: 238 GGEDHIPVHHSNEIAQT-QARYGTRLANFWMHGHFLLLDAGKMSKSGGDFLRLQTLSE-- 294 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKG 345 R R L HYR + F+ + RL + ++WPQ Sbjct: 295 ----RGNDPLAYRYLCLSAHYRSSLRFSEAALDAAQAALDRLRRS---YARWPQGGKPDA 347 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHI--------LGIEVC 397 + + +DLN A+ L + R LP A + LG+ Sbjct: 348 ASVARFKAEVDHDLNLPRALAVLWDVVRSD------LPPATRRASVDCFDVVLGLGLADW 401 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 K+ + I L +R K++S AD +R + + G+++ED Sbjct: 402 KDVDTPELPAEIAALADQRERARAAKQWSEADRLRDVMTAAGWLVED 448 >gi|188524105|ref|ZP_03004185.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867746|ref|ZP_03079747.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273408|ref|ZP_03205944.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195660058|gb|EDX53438.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660601|gb|EDX53857.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249928|gb|EDY74708.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 436 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 230/468 (49%), Gaps = 63/468 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ K+ E I I +Y CGPTVY+ HIGNARP+I DVLYR L+ + E Sbjct: 1 MKLYDSYSNKLVE---ISDKLISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKHNIE- 56 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 57 -TKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIINYIQKLIDKQAGYFVGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K+NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IENVVNKRNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINAYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNVNNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEILLSKWPQTSTSKGIIDPAVLSALY 356 + V+R Y++PI F+ + + E EI K + + L +L Sbjct: 276 --QYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEIFKIKNTIYNAKNYLYFNHELKSLV 333 Query: 357 -------------NDLNTVSAIQALH-------KLARESTKNHDL---LPIFNASAHILG 393 +DL+ V + +H L +E+ ++L L ILG Sbjct: 334 PIDHFKPFDELINDDLDFVGIVDLIHISVKKINTLIKENKNINELKLNLVQLLYMLDILG 393 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 IE H ++N++ L+ + K ++ AD +RK+L + G + Sbjct: 394 IEFIDLHNDENLA-----LLNAWKNYVDKKDYTKADELRKELINIGIL 436 >gi|308062209|gb|ADO04097.1| cysteinyl-tRNA synthetase [Helicobacter pylori Cuz20] Length = 465 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 157/470 (33%), Positives = 236/470 (50%), Gaps = 50/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLDQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK-- 398 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFVEELLGIGFKDPV 404 Query: 399 EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 405 EYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADSIREELLKQKIALMD 454 >gi|301778487|ref|XP_002924663.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial-like [Ailuropoda melanoleuca] Length = 611 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 128/314 (40%), Positives = 179/314 (57%), Gaps = 24/314 (7%) Query: 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC-VTYVRNITDIDDKIIE 81 P+ R Y CGPTVYD AH+G+A + FD++ R+L +G C + V ITD+DDKII Sbjct: 118 PTASRGYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG--CNIIMVMGITDVDDKIIR 175 Query: 82 RARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL 141 RA + +N + + + + + F +D L L PT R T +IPQ+I I+ II Sbjct: 176 RAAE------MNVSPASLANLYEEDFKQDMAALKVLPPTVYLRVTENIPQIISFIEGIIA 229 Query: 142 HGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 +GHAY A + FD SI + YG + P K++ +DF LWK + P Sbjct: 230 NGHAYSTAQGNVYFDLRSIGDKYGKL----VGAVPSPVGEPVDSDKRHASDFALWKAAKP 285 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 E W SPWG+GRPGWHIECS +SS G+ DIH GG DL FPHHENEIAQ + Sbjct: 286 QEVFWASPWGKGRPGWHIECSTISSLVFGRQLDIHSGGADLAFPHHENEIAQCEAFHQCR 345 Query: 260 KTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + N ++H+G L+++G+ KMSKS N+ITI + L+T +P V RL + + YR Sbjct: 346 QWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKT-------FPPDVFRLFCMRSAYR 398 Query: 318 EPIDFTVQRLTEAE 331 ID++ + EA+ Sbjct: 399 SAIDYSDGTMLEAK 412 >gi|317014292|gb|ADU81728.1| cysteinyl-tRNA synthetase [Helicobacter pylori Gambia94/24] Length = 465 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 235/470 (50%), Gaps = 50/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLIHNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKAFKENKSIQELSNIYI------ESYTRDLNALNVKQPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K Sbjct: 115 EYLDAMVSMIETLLEKNFAYQVSNGDIYLDTSKDKDYGSLSMH--NSSVEFSRIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGTD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI + Sbjct: 345 LECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPN 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L + L D Sbjct: 405 AYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLQQKIALMD 454 >gi|159900776|ref|YP_001547023.1| cysteinyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159893815|gb|ABX06895.1| cysteinyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 396 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 203/384 (52%), Gaps = 34/384 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +Y+TL + + ID +RMYVCG T YD H+G+AR +V+D + R L + V Sbjct: 3 LYDTLCQTPVAMEPID-GFVRMYVCGVTPYDTTHMGHARTYVVYDTIRRYLEWQ--GLPV 59 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV+N+TDIDD I+ ++ Q + + + T++F++D L P H +AT Sbjct: 60 LYVQNVTDIDDDILRKSAQ------LGLTWDELGRQETERFLRDMDALNVRMPNHYVKAT 113 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF------SRRKIDEQKMGTRVP 180 + I ++I + +I G AYE + F+ + P++GS S I ++ P Sbjct: 114 DAIAKIIEVNSGLIERGVAYENQGNVYFNVHADPDFGSLAHSDYASMLAIANER--GNFP 171 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + HK++P DF+LW+ + P EP W+SPWGRGRPGWHIEC+AM YLG +IHGGG DL Sbjct: 172 DDPHKRDPLDFVLWQATKPGEPWWDSPWGRGRPGWHIECTAMVLEYLGPQINIHGGGSDL 231 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHH E+AQ+ W H G + EG KMSKS GN + ++ L+ Sbjct: 232 QFPHHACELAQAENFTGQSPHVAAWSHIGMVYYEGEKMSKSLGNLVLASKTLQ------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 + A IRL +L +YR+ +++ + E + ++ Q S G+ A+ Sbjct: 285 HYSADAIRLGLLKYYYRDQFEYSNDDVAWGERTVERFKQAVNS-GVSGGALHAEELRNEA 343 Query: 352 LSALYNDLNTVSAIQALHKLARES 375 ++AL D T + +QAL LA S Sbjct: 344 IAALDADFQTPACLQALITLAEAS 367 >gi|312892185|ref|ZP_07751682.1| cysteinyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603] gi|311295315|gb|EFQ72487.1| cysteinyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603] Length = 486 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 158/482 (32%), Positives = 240/482 (49%), Gaps = 40/482 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ +YNTL RK EF+ ++ ++ MYVCGPTVY H+GN R I FD+++R L + Sbjct: 1 MEQKLFVYNTLTRKKEEFKPLNAPHVGMYVCGPTVYSDVHLGNCRTFISFDLIFRYLTHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLAC 116 + V YVRNITD + E + I + T F + Sbjct: 61 GYQ--VRYVRNITDAGHLEGDADEGEDKISKKAKIAKLEPMEIVQRYTVGFHEIMQVFNA 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRKIDEQ 173 L P+ +P AT HI + I L++ I+ G AYE + + FD ++ +YG + R +D+ Sbjct: 119 LPPSIEPTATGHIIEQIELVKLILEKGFAYEVDGSVYFDVEKYNATQDYGILNGRNLDDL 178 Query: 174 KMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 TR + + K DF LW ++ P W SPWG G PGWH+ECSAMS YLG+ F Sbjct: 179 LNNTRTLGGQDDKHGKLDFALWIKAKPEHLMKWPSPWGLGFPGWHLECSAMSHKYLGEQF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DL+ HH NEIAQ+ A + A WIH L + G+KMSKS GN +EL Sbjct: 239 DIHGGGIDLMPTHHTNEIAQN-VASCGKNPALYWIHTNMLTVNGQKMSKSLGNSFLPHEL 297 Query: 292 LE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQT 340 T + + +R M+ HYR +DF+ +RL A L++ + Sbjct: 298 FAGTHSLLTKGYSPMTVRFFMMQAHYRSTLDFSNEAMEASEKGFKRLMNAFALVNGLKAS 357 Query: 341 STSK---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNAS 388 + S + +A+ +D N+ I L ++++ HD L + N Sbjct: 358 AESDVNVAELQSKCYAAINDDFNSPVLIAELFEISKIVNSVHDGKLKIDQNNLQLLQNIM 417 Query: 389 AH----ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 H ILG++ ++ N+ + I+ ++ R K ++++D IR L+ GF L+D Sbjct: 418 QHFVVDILGLK-DEQAANEELPKVIDFIINLRSEAKKNMDYATSDKIRIGLQQIGFQLKD 476 Query: 445 YK 446 K Sbjct: 477 SK 478 >gi|261415170|ref|YP_003248853.1| cysteinyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371626|gb|ACX74371.1| cysteinyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326975|gb|ADL26176.1| cysteine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 484 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 166/492 (33%), Positives = 235/492 (47%), Gaps = 69/492 (14%) Query: 5 IKIYNTLERKITEFQAID--PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++ YNT RK F + P+ +RMY CGPTVY FAHIGN R I D L R L YY G Sbjct: 3 LQFYNTASRKKELFTLPEGVPA-VRMYCCGPTVYHFAHIGNLRTYIFEDFLVRTLNYY-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V ++ NITD+ DDK+ + A +E S+ I T F+ D Sbjct: 61 YK-VNHIVNITDVGHLTSDGDTGDDKMEKGAAREGKSV------WDIAKFYTDAFMADWH 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 RL PT RAT+HI + I L++ + G Y ++ I FD+ P Y F+R ++ Sbjct: 114 RLNIQEPTRWTRATDHIQEQIDLVKTLEEKGFTYRTSDGIYFDSLKFPRYADFARLDVEN 173 Query: 173 QKMGTRVPEKYHKKNPADFILWK-----RSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 + G+R+ + K N DF LWK + ME W+SPWG G PGWHIECSAM+ Y Sbjct: 174 LRKGSRI-DMGEKHNATDFALWKFSPTDKKRAME--WDSPWGVGFPGWHIECSAMAMKYN 230 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR----------- 276 G DIH GG D I HH NEIAQS CA+ ++ + W+H FL Sbjct: 231 GPTLDIHCGGTDHIRVHHTNEIAQSECANGVQ-FSRFWMHGEFLRTASEEKLEDGTTEQK 289 Query: 277 --KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---- 330 KMSKS+G F+T+ L+E R + R L +HYR ++FT + LT A Sbjct: 290 FGKMSKSSGEFLTVTLLME------RGFNPLDYRYFALGSHYRNYLNFTWEALTGAKEAF 343 Query: 331 -------EILLSKWPQ-TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL 382 + L+ K TS + A+ +DLN A+ ++ + + + + Sbjct: 344 KSLHKKTDPLIGKATAITSEAAKAFQQEFKDAIGDDLNMPRALGIMNTMLKSDIDDGEKA 403 Query: 383 PIFNASAHILGI-------EVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQ 434 + I G+ E K+ N NI A IE L+ R K ++ +D IR + Sbjct: 404 ALVADFDKIFGLKLDQPREEYVKKGANDNIDTAKIEALIAARKEARANKNWAESDRIRDE 463 Query: 435 LESKGFILEDYK 446 L + +++D K Sbjct: 464 LAAMNIVIKDSK 475 >gi|72162231|ref|YP_289888.1| cysteinyl-tRNA synthetase [Thermobifida fusca YX] gi|123733517|sp|Q47NV4|MSHC_THEFY RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|71915963|gb|AAZ55865.1| cysteinyl-tRNA synthetase [Thermobifida fusca YX] Length = 412 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 194/364 (53%), Gaps = 35/364 (9%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + RMYVCG T YD AH+G+A + FD++ R+ R V YV+NITDIDD ++ERA Sbjct: 38 ATARMYVCGITPYDAAHLGHAFTYLTFDLVNRVWRD--AGHTVDYVQNITDIDDPLLERA 95 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL-- 141 + ++ Q F +D L L PRA + + + LI + + Sbjct: 96 ------AATGQDWQELAAREIQVFREDMAALRIL----PPRAFLGVVESMDLIADFVARL 145 Query: 142 --HGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV------PEKYHKKNPADFIL 193 G YE + +I F + P +GS S ++D M P + KK+P D++L Sbjct: 146 RAQGVTYEVDGDIYFSAADAPGFGSLS--QLDRTAMLELFAERGGDPGRAGKKDPLDWLL 203 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ P EP W++P GRGRPGWH+ECSA+S H LG FD++GGG DLIFPHHE A++C Sbjct: 204 WRAERPGEPAWDTPLGRGRPGWHVECSAISVHELGMGFDLNGGGDDLIFPHHEMGAAEAC 263 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 CA A ++H + L+G KMSKS GN + +++L +K G IRLA+L Sbjct: 264 CATGSRPQARHYLHVAMVGLDGEKMSKSRGNLVFVSQL---RKAGTDPM---AIRLALLA 317 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-----PAVLSALYNDLNTVSAIQAL 368 HYR ++T L AE L +W + + D V SAL +DL+T +A+ A+ Sbjct: 318 HHYRTAWEWTDADLRTAEQRLERWRAAAAVENAPDARPLLARVRSALADDLDTATALAAV 377 Query: 369 HKLA 372 + A Sbjct: 378 DEWA 381 >gi|322688493|ref|YP_004208227.1| cysteinyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F] gi|320459829|dbj|BAJ70449.1| cysteinyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F] Length = 549 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 169/545 (31%), Positives = 250/545 (45%), Gaps = 111/545 (20%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 29 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 88 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+ +A ++F + L L PT Sbjct: 89 ---KVTFVRNVTDIDDKILVKAAA------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 139 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK----I 170 +PRAT H+ MI LIQ I+ +GH Y + + FD +S P+YG + +K + Sbjct: 140 EPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFDVASWPHYGELTHQKQTSEV 199 Query: 171 DE-----QKMGTRV----PEKYH----------KKNPADFILWKR---STPMEPGWESPW 208 DE +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 200 DEAAAVADRMGPSVDATGADKYNPVDPADASPDKHDPRDFALWKAPKDTDPEDARWSTPF 259 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ Sbjct: 260 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTRAAGY--PSAARWMHS 317 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 318 AWVTAKGEKMSKSLGTGLSVPSVLAEHS----AW---VVRYALGSVQYRSMLEWSDQALV 370 Query: 329 EAEILLSKWPQTSTSKGII---------DPAV---------LSALYNDLNTVSAIQALHK 370 EA+ + G+ PAV ++A+ +D+N A A+ Sbjct: 371 EAQAAYDRVSNFIERAGVALGGQPSREEVPAVSADDLPADFVAAMNDDVNVSGATAAIFT 430 Query: 371 LAR---------------ESTKNH--DLLPIFNASAHILGIEVCKEHLNKNIS------- 406 R E+ K + L A LG++ E + Sbjct: 431 AIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVSAGAAGGAADG 490 Query: 407 -------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 A+E L+ E+L K K F+ AD IR L G +ED G + + Sbjct: 491 TAESPEHAALEALIAEQLNARAEARKAKDFAKADQIRDALTEAGIAIED------GPQGS 544 Query: 456 RWKQK 460 W K Sbjct: 545 TWSLK 549 >gi|221055309|ref|XP_002258793.1| cysteine--trna ligase [Plasmodium knowlesi strain H] gi|193808863|emb|CAQ39566.1| cysteine--trna ligase, putative [Plasmodium knowlesi strain H] Length = 695 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 173/298 (58%), Gaps = 20/298 (6%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + N+L R EF + IR Y CGPTVYD AH+G+AR + FD++ R+L Y+ + V Sbjct: 126 VNNSLTRSKVEFVPQEKDQIRWYACGPTVYDAAHLGHARTYVSFDIIRRILVNYF-KYDV 184 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 V NITDIDDKII+R+ +E S + + K +F +D +L L PT R + Sbjct: 185 FMVINITDIDDKIIKRSEEEKVSF------TELARKWELEFWEDMKKLNVLLPTAITRVS 238 Query: 127 NHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIP-NYGSFSRR----------KIDEQK 174 ++ Q+I+ I+ II + +AY + FD + N F R KI E + Sbjct: 239 EYVDQIIHYIEKIIENKYAYVSEEGSVYFDIDAFKKNPKHFYARMEPLSVKDETKILEGE 298 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 V K KKN DF LWK S P EP W SPWG+GRPGWHIECS M+S+ LG V DIH Sbjct: 299 GDLGVISK-KKKNSYDFALWKSSKPNEPYWNSPWGKGRPGWHIECSTMASNILGSVLDIH 357 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITI +L Sbjct: 358 SGGVDLRFPHHDNELAQSEAFFDASQWVNYFLHSGHLHIEGLKMSKSLKNFITIKHML 415 >gi|257051141|ref|YP_003128974.1| cysteinyl-tRNA synthetase [Halorhabdus utahensis DSM 12940] gi|256689904|gb|ACV10241.1| cysteinyl-tRNA synthetase [Halorhabdus utahensis DSM 12940] Length = 496 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 147/503 (29%), Positives = 235/503 (46%), Gaps = 76/503 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL + F+ DP + +Y CG T D H+G+AR + DV++R L + + Sbjct: 3 LRVTNTLSGEREAFEPQDPDAVTLYYCGLTTSDPPHLGHARGWVHVDVMHRWLSWLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+++KI+ R + + + + + Q ++D L PR Sbjct: 62 -VHHVENFTDVNEKIVARVGE------VGGSEADVARTYIQDVIRDMRSLNLKRAEVYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+P++I L++ +I G+AYEAN + FD ++ +YG S + ++E E+ Sbjct: 115 VSEHVPEIIDLVETLIDRGYAYEANGSVYFDVTAFEDYGELSNQTVEELDAQGDPDERGE 174 Query: 185 KKNPADFILWKR---------------STPMEPG------WESPWGRGRPGWHIECSAMS 223 K++P DF LWK + P E W+SPWG+GRPGWHIECSAMS Sbjct: 175 KRHPQDFALWKAGGVDPADIGAHRHADAAPAEDACRTAQTWDSPWGQGRPGWHIECSAMS 234 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +LG+ DIH GG DL+FPHHENE+AQS A ++ AN W+H G L KMS S G Sbjct: 235 MTHLGETIDIHVGGQDLVFPHHENEVAQSEAATG-DRFANYWLHVGLLETGEEKMSSSLG 293 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ 339 NF T+ + + G V+R +L T Y +T + L+EA E L + + Sbjct: 294 NFATVEDAIAEYGLG-------VVRTFLLSTAYHSRAAYTEETLSEATKRFETLERGYER 346 Query: 340 TSTSKGIIDP------------------AVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 + +D A+ A+ +D NT A+ AL + ++ D Sbjct: 347 AVEAADSVDATAKTTDDALREAVETVREAIPRAMNDDFNTREALAALVEFTSAVNRHVDE 406 Query: 382 LPIFNASAHILGIEVCKEH--------LNKNISIAIEKLVQERLILLKMK---------K 424 + ++ I+V E L S + + E L+ L + Sbjct: 407 VEPYDYRGLRRAIDVYDEFAVGVLGLPLGDGGSDTGDVRLAEDLVELVLDVRAQERDAGN 466 Query: 425 FSSADYIRKQLESKGFILEDYKN 447 + AD +R +L + G ++D + Sbjct: 467 YERADELRDELAALGVEVQDSDD 489 >gi|85000123|ref|XP_954780.1| cysteinyl-tRNA synthetase [Theileria annulata strain Ankara] gi|65302926|emb|CAI75304.1| cysteinyl-tRNA synthetase, putative [Theileria annulata] Length = 694 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 177/318 (55%), Gaps = 25/318 (7%) Query: 16 TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI 75 EF + +R Y CGPTVYD AH+G+AR I D + +L Y + +V NITD+ Sbjct: 80 VEFVPEEGRKVRWYTCGPTVYDAAHMGHARTYIACDTIRSILENYLNYD-LFFVENITDV 138 Query: 76 DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 +DKII+RA E + +TS ++F D L P R ++++ +++ Sbjct: 139 EDKIIQRALNE------GKPFTEVTSHWEKEFWNDMLSLGVSLPDCITRVSDYMTEIVDF 192 Query: 136 IQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM----------GTRVPEKYHK 185 I+ I+ +G+AY ++ + FD S N G K++ GT +K Sbjct: 193 IKKILDNGYAYVSDGSVYFDIESFRNSGKHVYAKLEPTSFNDLNRILDAEGTLGEVSLNK 252 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFPH 244 K+ +DF LWK+S EP WESPWGRGRPGWHIECSAMS+ GK VFDIH GG+DL FPH Sbjct: 253 KSKSDFALWKKSKVNEPSWESPWGRGRPGWHIECSAMSTCIFGKEVFDIHSGGIDLRFPH 312 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NEIAQS + AN ++H G L++ G KMSKS NFIT+ E+L K+ R Sbjct: 313 HDNEIAQSEAYFDTNRWANYFLHFGHLHIHGLKMSKSLKNFITVKEMLS--KYNKRQ--- 367 Query: 305 PVIRLAMLMTHYREPIDF 322 IRL L + Y ++F Sbjct: 368 --IRLLFLNSRYDSTLNF 383 >gi|308184667|ref|YP_003928800.1| cysteinyl-tRNA synthetase [Helicobacter pylori SJM180] gi|308060587|gb|ADO02483.1| cysteinyl-tRNA synthetase [Helicobacter pylori SJM180] Length = 465 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 232/461 (50%), Gaps = 50/461 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFEPLVKNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+++I+ ++ AY +N +I DTS +YGS S + G R+ K Sbjct: 115 EYLDAMVHMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 405 AYFQLGVSESEKQEIESKIEERKRAKEQKDFLKADSIREEL 445 >gi|297380086|gb|ADI34973.1| cysteinyl-tRNA synthetase [Helicobacter pylori v225d] Length = 465 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 239/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|301117980|ref|XP_002906718.1| cysteinyl-tRNA synthetase, putative [Phytophthora infestans T30-4] gi|262108067|gb|EEY66119.1| cysteinyl-tRNA synthetase, putative [Phytophthora infestans T30-4] Length = 688 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 188/368 (51%), Gaps = 50/368 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN++ R T F + + Y+CGPTVYD H+G+ R FD + R+L Y+G + Sbjct: 35 LRLYNSMTRSKTAFVPMQGKRVLWYMCGPTVYDQTHLGHGRTYTCFDYVRRILEDYFGLE 94 Query: 65 CVTYVRNITDIDDKIIERAR-----QEHPSIPI----NDAISIITSKNTQQ--------- 106 V V NITDIDDKII RA + +P + ++ ++ +QQ Sbjct: 95 -VELVMNITDIDDKIILRASETGWLEANPGKELPKDKDEKAKLVMEWASQQSAEDNMRRT 153 Query: 107 ----------FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 F++D L PT R + ++P+++ ++ II +G AYE+N + FDT Sbjct: 154 RELSKFWEKSFLEDMAALNIKTPTVITRVSEYVPEVVEFVEGIIKNGFAYESNGSVYFDT 213 Query: 157 SSIPN-----YGSFSRRKIDEQKM-----GTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 ++ YG + + ++ G + K+N +DF LWK+S EP W S Sbjct: 214 AAFGQSKGKAYGKLLPENVGQSELLAEGEGALSAGQSDKRNASDFALWKKSKSGEPFWPS 273 Query: 207 PWGRGRPGWHIECSAMSS----HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 PWG GRPGWHIECSAM+S H G D+H GG+DL FPHH+NEIAQS + Sbjct: 274 PWGEGRPGWHIECSAMASDALKHLAGGKIDVHSGGIDLRFPHHDNEIAQSEAYFDFSQWV 333 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N ++H G LN+EG KMSKS NF+ I E L +R L+ Y P+D+ Sbjct: 334 NYFVHTGHLNIEGLKMSKSLKNFVKIQEALMDNS-------PRQLRFLFLLHKYNVPMDY 386 Query: 323 TVQRLTEA 330 + EA Sbjct: 387 NDNSMDEA 394 >gi|195334248|ref|XP_002033796.1| GM20229 [Drosophila sechellia] gi|194125766|gb|EDW47809.1| GM20229 [Drosophila sechellia] Length = 558 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 201/391 (51%), Gaps = 47/391 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYN R+ +P + Y CGPTVYD AH+G+A + D+L R+LR Y+ Sbjct: 48 INIYNHGLRQKVPLILRNPQMVTWYTCGPTVYDSAHLGHASTYVKVDILQRILRDYFKIN 107 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII+RA+ + D + + + F +D RL A + Sbjct: 108 LVTAM-NITDVDDKIIKRAQ-----LAGLDWQKMARAYEAE-FRQDMLRLNVQAADVRSH 160 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +P +I IQ +I AY +N + FD S NYG + E K+ Sbjct: 161 VTTTMPVIIQFIQQLIAEKQAYVTPDNSVYFDVSKSKNYGKLQNLGLSEDKLDPI----- 215 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK R + EP W +PWG GRPGWHIECSA++ + G+ DIH GGLDL Sbjct: 216 -KRNTADFALWKARKSGSEPTWAAPWGGEGRPGWHIECSAIAGLFFGRQLDIHAGGLDLR 274 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + ++ N W+H G L++ G +KMSKS GN I+++ELL Sbjct: 275 FPHHENEEAQCCARYKTDQWVNYWLHTGQLHMVGDAQKMSKSLGNTISVSELL------- 327 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP 349 + + A R+A L+++YR + + T+QR + LS + Q ++D Sbjct: 328 KKYTADEFRMACLLSNYRNAMPYSDQLMLTARQTLQRFKNFQADLSAYTQFLKPVHLLDE 387 Query: 350 AVLSA------------LYNDLNTVSAIQAL 368 L A L +D +T AI L Sbjct: 388 GALKAQLTHTVTEFDNCLRDDFDTARAISVL 418 >gi|308063719|gb|ADO05606.1| cysteinyl-tRNA synthetase [Helicobacter pylori Sat464] Length = 465 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 239/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLDQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADNIREELLKQKIALMD 454 >gi|298736162|ref|YP_003728688.1| Cysteinyl-tRNA synthetase [Helicobacter pylori B8] gi|298355352|emb|CBI66224.1| Cysteinyl-tRNA synthetase [Helicobacter pylori B8] Length = 465 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 238/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKSKQKVPFEPLIQNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVGMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 EHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER K F AD+IR++L + L D Sbjct: 403 PSAYFQLGVSESEKQEIENKIEERKRAKAQKDFLKADHIREELLKQKIALMD 454 >gi|328876354|gb|EGG24717.1| cysteinyl-tRNA synthetase [Dictyostelium fasciculatum] Length = 628 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/333 (41%), Positives = 192/333 (57%), Gaps = 23/333 (6%) Query: 7 IYNTLERKITEF-QAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 I N+L EF + ++ Y+CGPTVYD +H+G+AR I FDV+ R++R Y G Sbjct: 32 INNSLTMSKNEFVPSSGTKDVSWYICGPTVYDASHMGHARSYISFDVIRRIMRDYMGFN- 90 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 + YV NITDIDDKII RAR+ + + ++ F +D L L P R Sbjct: 91 IMYVMNITDIDDKIIIRARERGITH------TELSRACEASFFEDMKALNVLPPDALTRV 144 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRKIDEQKM-----GT 177 T +I +++ ++ II +G AYE+N + FDT S +YG + +K+ G Sbjct: 145 TEYITEIVTFVEKIIENGFAYESNGSVYFDTVAYSKQHDYGKLDPNAVGNEKLNSEGEGA 204 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K+N DF LWK+S +EP W SPWG GRPGWHIECSAM+S LG DIH GG Sbjct: 205 LSAAVSEKRNNNDFALWKKSKELEPKWNSPWGEGRPGWHIECSAMASDILGPNIDIHSGG 264 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH+NEIAQS + ++ N +IH+G L ++G KMSKS NFITI E L KK+ Sbjct: 265 EDLKFPHHDNEIAQSEAHYKCKQWINYFIHSGHLLIDGSKMSKSLKNFITIQEAL--KKY 322 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 R +R+ L+ Y +P++++V+ +T A Sbjct: 323 TARQ-----MRMLFLIHKYDKPMNYSVESMTNA 350 >gi|194754415|ref|XP_001959490.1| GF12902 [Drosophila ananassae] gi|190620788|gb|EDV36312.1| GF12902 [Drosophila ananassae] Length = 559 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 142/391 (36%), Positives = 198/391 (50%), Gaps = 47/391 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYN R+ P Y CGPTVYD H+G+A + D+L R+LR Y+ Sbjct: 49 INIYNPGMRRKVPLILRSPHMATWYTCGPTVYDETHLGHASTYVKVDILQRILRDYFKIN 108 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII RA S+ D + + + F +D RL P + Sbjct: 109 LVTAM-NITDVDDKIIMRA-----SLDGQDWLQLARDYEAE-FRRDMLRLNVKPPDVRSH 161 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+ +P +I IQ +I +AY ++N + FD S YG ++ I+E+ Sbjct: 162 VTSSMPVIIQFIQELIDDNYAYITSSNSVYFDVSKSKEYGKLAKVTIEEETSSN------ 215 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK R T EP W++PWG GRPGWHIECSA++ + G+ D H GGLDL Sbjct: 216 EKRNSADFALWKARKTQKEPSWQAPWGGEGRPGWHIECSAIAGLFFGRTVDFHAGGLDLR 275 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + ++ N W+H G L+L G RKMSKS N I++ ELL Sbjct: 276 FPHHENEEAQCCARYKTDQWVNYWLHTGQLHLTGDQRKMSKSLRNTISVEELL------- 328 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP 349 + + A R+A L+++YR + + T+QR LS + Q ++D Sbjct: 329 KKYTADEFRMACLLSNYRNAMYYSDDLMQTARQTLQRFKNFHADLSAYVQFLKPVHLLDE 388 Query: 350 AVLSA------------LYNDLNTVSAIQAL 368 L A L +D +T AI + Sbjct: 389 GALRAQLAHTMAEFDNSLRDDFDTSRAISVM 419 >gi|227537539|ref|ZP_03967588.1| cysteine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227242676|gb|EEI92691.1| cysteine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 390 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 201/392 (51%), Gaps = 41/392 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNT+ RK +F I PS + MYVCGPTVY H+GN R + FD+++R L + Sbjct: 1 MENNLVLYNTISRKKEKFNPIHPSMVGMYVCGPTVYSDVHLGNCRTFVSFDLIFRYL-LH 59 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 G K V YVRNITD DDK ++A+ E P+ I K T F D Sbjct: 60 LGYK-VRYVRNITDAGHLEGDRDEGDDKFAKKAKLEQLE-PME-----IVQKYTIGF-HD 111 Query: 111 TTRL-ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---NYGSFS 166 RL L P+ +P AT HI + I +I+ II +G+AYE N + FD +Y + Sbjct: 112 VLRLFNTLPPSIEPTATGHISEQIEMIKQIIDNGYAYEVNGTVYFDVEKYVQKYDYTVLT 171 Query: 167 RRKIDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSS 224 RK+++ TR + + KK DF LW ++ P W +PW G PGWHIECSAMS+ Sbjct: 172 NRKLEDLLNNTRELGGQDEKKGRLDFALWIKAKPEHIMRWPAPWSTGFPGWHIECSAMSN 231 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 YLG FDIHGGG+DL HH NEIAQS + A W+H L + G +MSKS+GN Sbjct: 232 KYLGAQFDIHGGGMDLAATHHTNEIAQSEACNHTSP-ARYWMHTNMLTVNGARMSKSSGN 290 Query: 285 FITINELLETKK-FGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 EL R + +R ML HYR +DF+ +RL A L Sbjct: 291 GFLPQELFTGNHPLLERGYSPMAVRFFMLQAHYRSTLDFSNEALDAADKGFKRLMNAIAL 350 Query: 334 LSKWPQTSTSKGI----IDPAVLSALYNDLNT 361 L+K + + G I +A+ +D N+ Sbjct: 351 LNKITPSKATSGFNLEDIRKNCYAAMDDDFNS 382 >gi|298674878|ref|YP_003726628.1| cysteinyl-tRNA synthetase [Methanohalobium evestigatum Z-7303] gi|298287866|gb|ADI73832.1| cysteinyl-tRNA synthetase [Methanohalobium evestigatum Z-7303] Length = 486 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/486 (32%), Positives = 231/486 (47%), Gaps = 59/486 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN+L K+ F +D +RMY CGPTVY HIGN R ++ D+L R L + Sbjct: 3 IKLYNSLTNKVESFIPVDDKFVRMYNCGPTVYGRVHIGNIRSFLMADLLKRFLNLEGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLACLAPT 120 V NITD+ + E D + I K Q F+ D +L Sbjct: 62 -VRQAMNITDVGHMTSDSDEGEDKLQVAADKEKLDPWKIADKYKQLFIDDLNKLNIDDAD 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PRAT HI +MI +I+ +I +G+AY + + FD + P YG S +++ + R Sbjct: 121 VYPRATQHINEMIEVIKKLIDNGYAYVSGGNVYFDITKFPEYGKLSGNVLEKLQSQERAV 180 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF------ 231 +K+NP DF+LW + + W+SPWG G PGWHIECSAM+ YL F Sbjct: 181 YDPYKRNPQDFVLWFSHSKYKNHIMNWDSPWGEGYPGWHIECSAMALKYLTDAFNKHFDS 240 Query: 232 ------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 DIH GG D FPHHE EIAQS A +K N W+H L +EG KMSKS N Sbjct: 241 EKSTTIDIHTGGEDNKFPHHECEIAQSEGATG-QKFVNYWMHVTHLLVEGDKMSKSLNNI 299 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------ 339 T+ ++L + + +R +L THYR+ ++FT + L ++ + + + Sbjct: 300 YTLPDIL------NQGYKPEAVRYVLLTTHYRQKLNFTFKNLQASQNAIDRLQELIFNLK 353 Query: 340 -TSTSKGIIDPA---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA 389 G + + L NDLN AI L + + T N L I A Sbjct: 354 HIGNESGDFEAEKFAEKVKDDFIKELENDLNIAGAIGVLFEAVK--TINKSLTNIGQQEA 411 Query: 390 HILGIEVCKEHLNKNISI-----------AIEKLVQERLILLKMKKFSSADYIRKQLESK 438 IL +++ K+ ++K + + I++L+++R K F++AD IR L+ + Sbjct: 412 DIL-LDMLKD-VDKVLGVLDFSEQAPLEKEIQELIEQRDRARDSKDFATADKIRDNLKKR 469 Query: 439 GFILED 444 G L D Sbjct: 470 GIHLID 475 >gi|188527712|ref|YP_001910399.1| cysteinyl-tRNA synthetase [Helicobacter pylori Shi470] gi|229558719|sp|B2UU37|SYC_HELPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188143952|gb|ACD48369.1| cysteinyl-tRNA synthetase [Helicobacter pylori Shi470] Length = 465 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADNIREELLKQKIALMD 454 >gi|317012690|gb|ADU83298.1| cysteinyl-tRNA synthetase [Helicobacter pylori Lithuania75] Length = 465 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 234/463 (50%), Gaps = 54/463 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGMIETLLEKNFAYKVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 SDLLFPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGNLGEINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFVEELLGIGFKD 402 Query: 399 EHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 403 PSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREEL 445 >gi|15645504|ref|NP_207679.1| cysteinyl-tRNA synthetase [Helicobacter pylori 26695] gi|2507427|sp|P41259|SYC_HELPY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|2314022|gb|AAD07934.1| cysteinyl-tRNA synthetase (cysS) [Helicobacter pylori 26695] Length = 465 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 239/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVQNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 EHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L + L D Sbjct: 403 PSAYFQLGVSESEKQEIENKIEERKRAKERKDFLKADSIREELLKQKIALMD 454 >gi|76802853|ref|YP_330948.1| cysteine--tRNA ligase [Natronomonas pharaonis DSM 2160] gi|76558718|emb|CAI50311.1| cysteine--tRNA ligase [Natronomonas pharaonis DSM 2160] Length = 497 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 183/355 (51%), Gaps = 33/355 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL + EF+ DP N+ +Y CG TV D+AH+G+AR + DV++R L + Sbjct: 3 LRVSNTLSGEREEFEPADPDNVLLYYCGLTVSDYAHLGHARTWVHVDVIHRWLEALGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+++KI+ R + D + + Q + D L PR Sbjct: 62 -VRHVENITDVNEKIVARVGEPADGDTFGDDEGDVATHFIDQLLSDMRSLNLKRAEVYPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+P++I LI+ ++ G+AYE+N + FD + YG S ++++ + E+ Sbjct: 121 VSEHVPEIIDLIETLVERGYAYESNGSVYFDVTEFEEYGKLSNQRLEAVEAQGPETEQAE 180 Query: 185 KKNPADFILWKRS--------------------TPMEPGWESPWGRGRPGWHIECSAMSS 224 K++PADF LWK +P W SPWG GRPGWHIECSAMS Sbjct: 181 KRHPADFALWKAGGVSESALEEHRDADCEYATESPAGQTWASPWGEGRPGWHIECSAMSM 240 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +L DIH GG DL+FPHHENEIAQS A E+ A W+H ++ KMS S GN Sbjct: 241 THLDDSIDIHMGGRDLVFPHHENEIAQSEAA-TGEQFARYWLHADLFQMDDEKMSSSLGN 299 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 FI ++E + +FG +R+ L Y ++ + EA L +W + Sbjct: 300 FIPVSEAV--ARFG-----VNPLRMFFLSASYNSTQTYSEAAIEEA---LERWDR 344 >gi|85057859|ref|YP_456775.1| cysteinyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma AYWB] gi|109894883|sp|Q2NIP7|SYC_AYWBP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|84789964|gb|ABC65696.1| cysteinyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma AYWB] Length = 438 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 221/460 (48%), Gaps = 46/460 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L RK F+ P I +YVCGPTVY+ H+GN RP+I FD + R L + Sbjct: 2 LQIYNSLTRKKEFFKPDHPPQINIYVCGPTVYNHLHLGNTRPLIFFDTVKRYLEMLKFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI-ITSKNTQQFVKDTTRLACLAPTHQP 123 V YV NITDIDDKIIE + + N + + +K + F L +P Sbjct: 61 -VYYVVNITDIDDKIIETSLK-------NQVLEKDLANKYIKSFNNLLETLNIQTINFKP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I MI IQ ++ G AY + I F S I +YG ++ + + K R Sbjct: 113 QATQYINSMILYIQTLLDQGFAYFTDQGIYFRVSKITDYGKLKKQDLSQLKQNVRKQLDP 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DFILWK+ T + SPW GRPGWH EC+ M DIHGGG DL FP Sbjct: 173 QKEFPGDFILWKK-TSQGITYPSPWFAGRPGWHTECATMIEQLFKLPLDIHGGGTDLKFP 231 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A +K AN ++H L+ + +KMSKS GN I +LL + + Sbjct: 232 HHENEIAQT-HAHSHQKLANFFMHVERLDYQNQKMSKSLGNIIWCKDLL-------KQYN 283 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---IDPAVLSALYNDLN 360 +I+ +L THYR+PI+F+ + + + K T ++ L D+ Sbjct: 284 PCIIKFLILSTHYRKPINFSYDLMEQTQQKYKKITYFLTKNNFYLKVNHFFCQTLDQDI- 342 Query: 361 TVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIAIEKLV---- 413 +Q H+L ++ H DL+ AH I ++ + + LV Sbjct: 343 ----MQLFHQLMQDDFATHKVIDLMEQIIKRAHQTQILDKLSQFQNSLLLILNTLVIAIP 398 Query: 414 ---------QERLI---LLKMKKFSSADYIRKQLESKGFI 441 Q + K + F AD +RKQL KGFI Sbjct: 399 FNKPTKKDLQTYFLWQDARKCRDFIQADILRKQLLDKGFI 438 >gi|66475306|ref|XP_627469.1| cysteinyl-tRNA synthetase [Cryptosporidium parvum Iowa II] gi|32398684|emb|CAD98644.1| cysteinyl-tRNA-synthetase, possible [Cryptosporidium parvum] gi|46229332|gb|EAK90181.1| cysteinyl-tRNA synthetase [Cryptosporidium parvum Iowa II] gi|323508907|dbj|BAJ77346.1| cgd6_960 [Cryptosporidium parvum] gi|323510143|dbj|BAJ77965.1| cgd6_960 [Cryptosporidium parvum] Length = 581 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 188/342 (54%), Gaps = 31/342 (9%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY 68 N++ TEF ++ + Y CGPTVYD AH+G+AR + FD++ R+L Y+G V Sbjct: 44 NSMTGGRTEFIPVNGRRVNWYACGPTVYDSAHLGHARNYVTFDIIRRVLEDYFGYD-VYL 102 Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 V NITDIDDKII+R+ ++ ++ + + +F D L P R + Sbjct: 103 VMNITDIDDKIIKRSNEQKRENFLD-----LAREFELEFFDDMKALNVKMPDVVTRVSEF 157 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSFSRRKI--------DEQKM 175 IP++I I II G AYE+ + FD S YG + + E ++ Sbjct: 158 IPEIIDFISTIISRGFAYESEGSVYFDVESFRADEKHVYGRMEPKSVADVNRVLEGEGEL 217 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G + +K K+P DF LWK++ P EP W+SPWG+GRPGWHIECS M+S+ LG DIH Sbjct: 218 GEHLKDK---KSPLDFALWKKAKPEEPCWDSPWGKGRPGWHIECSVMASNTLGFPIDIHS 274 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHH+NE+AQS + N ++H+G L++ G KMSKS NF TI E+L+ Sbjct: 275 GGIDLRFPHHDNELAQSEAHYDQAQWVNYFLHSGHLHIHGSKMSKSLKNFTTIQEILKEN 334 Query: 296 KFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 +P IR+ L+ + P++++ + + I + K Sbjct: 335 --------SPRHIRMLFLLHKWDAPMNYSPETSLQEAIAVDK 368 >gi|156096861|ref|XP_001614464.1| cysteine -tRNA ligase [Plasmodium vivax SaI-1] gi|148803338|gb|EDL44737.1| cysteine -tRNA ligase, putative [Plasmodium vivax] Length = 686 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 173/297 (58%), Gaps = 18/297 (6%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + N+L R EF + + I+ Y CGPTVYD AH+G+AR + FD++ R+L Y+ V Sbjct: 117 VNNSLTRSKVEFVPQEKNQIKWYACGPTVYDAAHLGHARTYVSFDIIRRILVNYFKYD-V 175 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 V NITDIDDKII+R+ +E S + + K +F +D +L L PT R + Sbjct: 176 FMVINITDIDDKIIKRSEEEKVSF------TELARKWECEFWEDMKKLNVLLPTAITRVS 229 Query: 127 NHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGS--FSRRKIDEQKMGTRVPE-- 181 ++ Q+I+ I+ II + +AY + FD ++R + K T++ E Sbjct: 230 EYVDQIIHYIEKIIDNKYAYVSEEGSVYFDIDEFKKSPKHFYARMEPLSVKDETKILEGE 289 Query: 182 ------KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 KKN DF LWK S P EP W+SPWG+GRPGWHIECS M+S+ LG V DIH Sbjct: 290 GDLGVISKKKKNAYDFALWKSSKPNEPYWDSPWGKGRPGWHIECSTMASNILGSVLDIHS 349 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITI +L Sbjct: 350 GGVDLRFPHHDNELAQSEAFFDASQWVNYFLHSGHLHIEGLKMSKSLKNFITIKHML 406 >gi|317178758|dbj|BAJ56546.1| cysteinyl-tRNA synthetase [Helicobacter pylori F30] Length = 465 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ S+ +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSVQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILKCMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKN 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE ++ER + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEERKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|298710863|emb|CBJ26372.1| Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 535 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 185/349 (53%), Gaps = 31/349 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 ++ + ++NT R F+ D ++ Y CGPTVYD AHIGN R + +DVL R L Y Sbjct: 15 VESGLMLFNTEGRTKERFRPQDRRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQ 74 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V +V N+TD+DDKII R ++ S+ +T K + F D L + + Sbjct: 75 GFE--VDHVCNLTDVDDKIIARMARDGVSL------EELTGKYAKLFFDDLESLNIVPAS 126 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PRAT HI ++ ++Q +I AY+ N + F S YG+ + +D M Sbjct: 127 RYPRATEHIDDIVEMVQGLIDKELAYKVNGSVYFRVSKHGKYGTLA--CLDTSGMEDGAG 184 Query: 181 E----------KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYL 227 E + K++ DF LWK P E G W++ G+GRPGWHIECSAM+ +L Sbjct: 185 EGGGVNDAAEFESEKEDAKDFALWKGYKP-EDGEVFWDTLLGKGRPGWHIECSAMARKFL 243 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G D+H GG+DL+FPHHENE+AQS + W+HN F+N++G KMSKS GNF+T Sbjct: 244 GDTLDVHAGGIDLVFPHHENEVAQSEGFTG-KPFCRCWVHNAFVNVDGEKMSKSKGNFLT 302 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 + L T + R ++ + YR + F+++ L A+ L + Sbjct: 303 LKSTLAT------ALDVRAFRYLVVSSQYRTTLGFSMKSLQSAKNTLRR 345 >gi|85374564|ref|YP_458626.1| cysteinyl-tRNA synthetase [Erythrobacter litoralis HTCC2594] gi|84787647|gb|ABC63829.1| cysteinyl-tRNA synthetase [Erythrobacter litoralis HTCC2594] Length = 500 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 168/506 (33%), Positives = 239/506 (47%), Gaps = 89/506 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R + EFQ I P R+Y CGPTVY++ HIGN R I D L R L + + Sbjct: 6 LKLFNSLTRSLEEFQPIHPGEARVYTCGPTVYNYQHIGNMRAYIFADTLGRTLSWKGFD- 64 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 + +V NITD+ DDK+ + A +E S I Q F D RL Sbjct: 65 -LKHVINITDVGHLTSDADAGDDKMEKAAAREGKSA------WDIARYYQQVFEADLDRL 117 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P H PRAT+++ MI ++I H YE ++ + FD S++P YG +R DE + Sbjct: 118 NIRKPEH-PRATDYVESMIAWAKSIEAK-HCYELDSGLYFDVSTVPEYGRLARAVTDEGE 175 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R+ E K+N ADF +W+++ P E W+SPWG+G PGWH+ECS MS+ LG F Sbjct: 176 --GRIDEVEGKRNAADFAIWRKTPPGETRQMEWDSPWGKGAPGWHLECSVMSAELLGHPF 233 Query: 232 DIHGGGLDLIFPHHENEIAQ----SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 DIH GG+D HH NEIAQ +C D A IW+HN FL KMSKS+G F+T Sbjct: 234 DIHTGGIDHREIHHPNEIAQNQAHNCSPD---SGAKIWMHNNFLIDRRGKMSKSSGEFLT 290 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------- 336 + L++ R + R+ L HYR ++FT + L A + L + Sbjct: 291 LQALVD------RGFHPLAYRMLCLQAHYRSELEFTWEGLEAALVRLKRMVMALETLKAR 344 Query: 337 --------------WPQTST---------SKGIIDPAVL---SALYNDLNTVSAIQALHK 370 W Q G + PA+ +A+ +DLNT ++ A+ Sbjct: 345 HAELVSASMPNSKPWAQMEAWTLKQVQGDDWGKLGPAIEKFGTAIADDLNTAISLTAMED 404 Query: 371 LARESTKNHD------LLPIFNASAHILGIEVCKEHLNKNISIA------IEKLVQERLI 418 L +TK D L F+A + + + L + A IE ER Sbjct: 405 LL--ATKKIDPAKKLVLASAFDAVLGFDLLNLSRTDLRTRPATAEISEAEIEAAFAERKE 462 Query: 419 LLKMKKFSSADYIRKQLESKGFILED 444 K F+ +D IR L +KG + D Sbjct: 463 ARAAKDFARSDAIRDDLAAKGVEVMD 488 >gi|296188978|ref|XP_002742588.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial [Callithrix jacchus] Length = 565 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 207/400 (51%), Gaps = 58/400 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 51 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFG-- 108 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C + V ITD+DDKII+RA + +N + + + S + F +D L L PT Sbjct: 109 CNIVMVMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYL 162 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ++ I+ II GHAY A + FD S + YG + P Sbjct: 163 RVTENIPQIVSFIEGIIARGHAYSTAKGNVYFDLKSRGDKYGKL----VSVAPGPAGEPA 218 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P+DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL Sbjct: 219 DSDKRHPSDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLA 278 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + E+ N ++H+G L+++G+ KMSKS N++TI + L+T Sbjct: 279 FPHHENEIAQCEVFHQCEQWGNYFLHSGHLHMKGKEEKMSKSLKNYVTIKDFLKT----- 333 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----------------------------E 331 + + RL L + YR ID++ + +A E Sbjct: 334 --FSPDIFRLFCLRSSYRSAIDYSDSAMLQAQQLLLGLGSFLEDARAYMKGQLASGSVRE 391 Query: 332 ILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL 371 ++L W + S++K AV +AL +D +T S + A+ L Sbjct: 392 VML--WERLSSTK----RAVRAALADDFDTPSVLDAILGL 425 >gi|284031725|ref|YP_003381656.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Kribbella flavida DSM 17836] gi|310947189|sp|D2PPT3|MSHC_KRIFD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|283811018|gb|ADB32857.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Kribbella flavida DSM 17836] Length = 406 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/404 (33%), Positives = 207/404 (51%), Gaps = 24/404 (5%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++++Y+T + E RMYVCG T YD H+G+A + FD++ RL R Sbjct: 17 RRLRLYDTASGGLVEVPPGPDGPARMYVCGITPYDATHMGHAATYVTFDLVNRLWRD--A 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y +NITD+DD ++ERA + D + + Q F D T L + P Sbjct: 75 GYTVHYTQNITDVDDPLLERATAT--GVEWTD----LAEREIQLFRDDMTALRVIPPQEY 128 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRV- 179 IP ++ I + G Y+ + ++ F + P +G S D + G R Sbjct: 129 VGVVESIPLVVERIAELQQAGAVYDVDGDLYFAVKADPAFGGISSYDADTMRTLFGERGG 188 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P++ K++P D ++W++ P EP W+SP+GRGRPGWHIECSA++ YLG D+ GGG Sbjct: 189 DPDREGKRDPLDCLVWQQERPGEPAWDSPFGRGRPGWHIECSAIALQYLGMTIDVQGGGS 248 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHE +++ CA A ++H + L+G KMSKS GN + L+ ++ Sbjct: 249 DLIFPHHEMSASEAQCATGQHPFARAYVHQAMVGLDGEKMSKSKGNLV----LVSRERQA 304 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-SKGIIDPAVL----S 353 G A IRLA+L HYR +T L +A+ L W T G PA + + Sbjct: 305 GSDPMA--IRLALLAHHYRTDWFWTDSELLDAQERLDVWRGAITRGTGPDGPAAVDALRA 362 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFN-ASAHILGIEV 396 AL NDL+T +A+ A+ + A + + + + A +LGI++ Sbjct: 363 ALTNDLDTTAALAAIDQWAETNGDDPEASALVALAVDALLGIKL 406 >gi|186701979|ref|ZP_02971607.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700745|gb|EDU19027.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 436 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 228/468 (48%), Gaps = 63/468 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ ++ E I+ I +Y CGPTVY+ HIGNARP+I DVLYR L+ + Sbjct: 1 MKLYDSYSNQLVE---INDELISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKH--NI 55 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 56 KTKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIIDYIQKLIDKQAGYFIGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IESAANKHNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINTYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNINNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEILLSKWPQTSTSKGIIDPAVLSALY 356 + V+R Y++PI F+ + + E EIL K + + L +L Sbjct: 276 --EYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEILKIKNAIYNAKNYLYFNNQLKSLT 333 Query: 357 -------------NDLNTVSAIQALH-------KLARESTKNHDL---LPIFNASAHILG 393 +DL+ V + +H L +E+ ++L L ILG Sbjct: 334 QIDHFGLFDERINDDLDFVGIVDLIHISVKKINILIKENKDMNELKLNLTQLLYMLDILG 393 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I H +KN++ L+ + K + AD +RKQL + G + Sbjct: 394 INFVDLHNDKNLA-----LLNTWKNYIDKKDYVKADELRKQLINIGIL 436 >gi|291456071|ref|ZP_06595461.1| cysteine--tRNA ligase [Bifidobacterium breve DSM 20213] gi|291382480|gb|EFE89998.1| cysteine--tRNA ligase [Bifidobacterium breve DSM 20213] Length = 549 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 163/529 (30%), Positives = 243/529 (45%), Gaps = 105/529 (19%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +Y+T +++ F + P + +YVCG TV HIG+ R + FD++ R L+ Y Sbjct: 29 EGLNLYDTASHQVSHFVPLKPGEVGIYVCGATVQSSPHIGHIRAAVAFDIVRRWFLKLGY 88 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A ++F + L L PT Sbjct: 89 ---KVTFVRNVTDIDDKILDKAAT------AGQRWWARAYYYEREFTEAYNTLGVLPPTV 139 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK----- 169 +PRAT H+ MI LIQ I+ +GH Y + + FD +S P+YG + +K Sbjct: 140 EPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFDVASWPHYGELTHQKQTAEV 199 Query: 170 ----IDEQKMGTRVP----EKYH----------KKNPADFILWKR---STPMEPGWESPW 208 +MG V +KY+ K +P DF LWK + P + W +P+ Sbjct: 200 DEAAAVADRMGPSVDATGDDKYNPVDPADASPDKHDPRDFALWKAPKDTDPEDARWSTPF 259 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A +A W+H+ Sbjct: 260 GVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTRAAGY--PSAARWMHS 317 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 ++ +G KMSKS G +++ +L +W V+R A+ YR ++++ Q L Sbjct: 318 AWVTAKGEKMSKSLGTGLSVPSVLAENS----AW---VVRYALGSVQYRSMLEWSDQALV 370 Query: 329 EAE--------------ILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQA--- 367 EA+ + L P GI + ++A+ +D+N A A Sbjct: 371 EAQAAYDRVSNFIERAGVALGGQPSREEVTGISADDLPTDFVAAMNDDVNVSGATAAIFT 430 Query: 368 --------LHKLARESTKN------HDLLPIFNASAHILGIEVCKEHLNKNIS------- 406 L +LA + + L A LG++ E + Sbjct: 431 TIRSGNTLLSQLADRADSEAVQAEVRETLLAVRAMLDTLGLDPLAEPWVSAGAAGGASDG 490 Query: 407 -------IAIEKLVQERL----ILLKMKKFSSADYIRKQLESKGFILED 444 A+E L+ E+L K + F+ AD IR L G +ED Sbjct: 491 TTETPEHAALEALITEQLNARAEARKARDFAKADQIRDTLAEAGITIED 539 >gi|86131788|ref|ZP_01050385.1| cysteine-tRNA ligase [Dokdonia donghaensis MED134] gi|85817610|gb|EAQ38784.1| cysteine-tRNA ligase [Dokdonia donghaensis MED134] Length = 494 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 174/493 (35%), Positives = 251/493 (50%), Gaps = 66/493 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ +YN+L K F + + MYVCGPTVY H+GN R + FD+++R L++ G Sbjct: 7 QELTVYNSLSGKKEIFTPLLEGYVGMYVCGPTVYSNVHLGNVRTFMSFDMIFRYLKHL-G 65 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD +DKI ++AR E P+ + K T F Sbjct: 66 YK-VRYVRNITDAGHLTDDADQGEDKIAKKARLEQIE-PME-----VVQKYTLDFHDILN 118 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRK 169 + L P+ +P AT HI + I +I+ II +G+AYE N + FD YG S RK Sbjct: 119 KFNFLPPSIEPTATGHIIEQIEIIKKIIDNGYAYEKNGSVYFDVIKFNEDHEYGKLSGRK 178 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 +++ TR + + K NP DF LWK++ P W SPWG G PGWH+EC+AMS+ YL Sbjct: 179 LEDMITNTRALSAQDEKNNPQDFALWKKAEPEHIMRWPSPWGDGFPGWHLECTAMSTKYL 238 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ FDIHGGG+DL FPHHE EIAQ+ A E W+H L L G+KM+KS GN I Sbjct: 239 GEQFDIHGGGMDLKFPHHECEIAQNEAAIGTEPV-KYWLHANMLTLNGQKMAKSTGNSIN 297 Query: 288 INELLETKKFGGRS------WPAPVIRLAMLMTHYREPIDFT----------VQRLTEAE 331 E+ F G S + V R +L + YR +DF+ RL EA Sbjct: 298 PGEI-----FTGDSPHLTKGFAPSVARFFILQSSYRSIMDFSNDALLASEKGFNRLMEA- 351 Query: 332 ILLSKWPQTS--TSKGIID--PAVLSALYNDLNT-------VSAIQALH--KLARESTKN 378 + ++K TS +S + D + +A+ +D NT A++ +H K + + Sbjct: 352 LKIAKNLDTSKESSFNVNDWKASCYAAMNDDFNTPILIAHLFDAVKQIHLIKDGKATITA 411 Query: 379 HD---LLPIFNASA-HILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 D LL NA +LG+E + + +S +E L++ R + K F+ +D I Sbjct: 412 SDLKLLLETINAFVFDVLGLEDNNAFAKADDSKLSGTVELLIKLRKEARENKDFALSDKI 471 Query: 432 RKQLESKGFILED 444 R +L G L+D Sbjct: 472 RDELIELGIQLKD 484 >gi|270001919|gb|EEZ98366.1| hypothetical protein TcasGA2_TC000823 [Tribolium castaneum] Length = 511 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/401 (35%), Positives = 203/401 (50%), Gaps = 55/401 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N R + + + Y CGPTVYD +HIG+A + D++ RLLR+Y+ Sbjct: 26 IKVFNCTARTKVPLIVKNKNLVTWYTCGPTVYDSSHIGHASCFVKLDIIQRLLRHYFNLN 85 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT V NITDIDDKII RA +P + + K +F KD L P R Sbjct: 86 VVT-VMNITDIDDKIIARANT--AKVPPKE----LAKKFEAEFWKDLDALDVRRPDCVLR 138 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-K 182 T ++ + I+ +I G AY+A +N + FD + NY Q +G PE Sbjct: 139 VTENMDVIKNFIRELIDKGKAYKAGDNSVYFDVGAYDNYAKL-------QNIGEDAPEPS 191 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHY----------LGKVFD 232 KK+ DF LWK + P E W S WG+GRPGWHIECSA++ H LG D Sbjct: 192 KFKKSKMDFALWKAAKPGEISWVSEWGKGRPGWHIECSALAGHVLVPTIRNNTSLGPEID 251 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINEL 291 IH GG+DL FPHHENE AQSC + N W+H G L+L + +KMSKS N I+I+ + Sbjct: 252 IHAGGIDLRFPHHENEEAQSCARYCRPQWVNYWLHTGHLHLKDSQKMSKSLHNTISISSM 311 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------- 337 LE AP R+A LM+HYR ++++ + + A +L + Sbjct: 312 LEDT-------TAPAFRMACLMSHYRSRMEYSNEFVITASKVLQNYINFVDNCQNYLNGY 364 Query: 338 -----PQTSTSKGIIDPA--VLSALYNDLNTVSAIQALHKL 371 + SK +++ A + SAL +D NT I +++L Sbjct: 365 LKADVDNDTVSKLVVESANKIHSALIDDFNTSEVISTINEL 405 >gi|195485861|ref|XP_002091264.1| GE12334 [Drosophila yakuba] gi|194177365|gb|EDW90976.1| GE12334 [Drosophila yakuba] Length = 560 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 141/391 (36%), Positives = 202/391 (51%), Gaps = 45/391 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYN R+ +P + Y CGPTVYD AH+G+A + D+L R+LR Y+ Sbjct: 48 INIYNHGLRQKVPLILRNPQMVTWYTCGPTVYDSAHLGHASTYVKVDILQRILRDYFKIN 107 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII+RA+ + D + + + F +D +RL + Sbjct: 108 LVTAM-NITDVDDKIIKRAQ-----LAGLDWQKMARAYEAE-FRQDMSRLNVQPADVRSH 160 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +P +I IQ +I AY +N + FD S NYG + ++K+ Sbjct: 161 VTTTMPVIIQFIQQLIDQKQAYVTPDNSVYFDVSKSQNYGKLENLGLSKEKL----ERGS 216 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK R + EP WE+PWG GRPGWHIECSA++ + G+ D H GGLDL Sbjct: 217 IKRNSADFALWKARKSGSEPTWEAPWGGEGRPGWHIECSAIAGLFFGRQLDFHAGGLDLR 276 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + ++ N W+H G L++ G +KMSKS GN I+++ELL Sbjct: 277 FPHHENEEAQCCARYKTDQWVNYWLHTGQLHMVGDAQKMSKSLGNTISVSELL------- 329 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP 349 + + A R+A L+++YR + + T+QR + LS + Q ++D Sbjct: 330 KKYTADEFRMACLLSNYRNAMPYSDQLMVTARQTLQRFKNFQADLSAYTQFLKPVHLLDE 389 Query: 350 AVLSA------------LYNDLNTVSAIQAL 368 L A L +D +T AI L Sbjct: 390 GALKAQLTYTVTEFDNCLRDDFDTARAISVL 420 >gi|242036957|ref|XP_002465873.1| hypothetical protein SORBIDRAFT_01g047380 [Sorghum bicolor] gi|241919727|gb|EER92871.1| hypothetical protein SORBIDRAFT_01g047380 [Sorghum bicolor] Length = 466 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 107/217 (49%), Positives = 136/217 (62%), Gaps = 8/217 (3%) Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L CL PT +PR T HI +I LI II +GH Y ++ F S P Y S RK+D+ Sbjct: 4 LQCLPPTREPRVTEHIEHIIELITKIIQNGHGYAIEGDVYFSVDSFPEYLLLSGRKLDQN 63 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G RV K+NPADF LWK + EP WESPWG GRPGWHIECSAMS+HYLG VFDI Sbjct: 64 RAGERVAVDTRKRNPADFALWKSAKEGEPSWESPWGHGRPGWHIECSAMSAHYLGHVFDI 123 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG DLIFPHHENE+AQS A E W+HNGF+N + +KMSKS NF TI +++ Sbjct: 124 HGGGRDLIFPHHENELAQSRAA-YPESEVICWMHNGFVNKDDQKMSKSENNFFTIRDIIS 182 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + +R ++ THYR ++ + + + +A Sbjct: 183 L-------YHPMALRYFLIRTHYRSDVNHSDKAIEKA 212 >gi|258570935|ref|XP_002544271.1| cysteinyl-tRNA synthetase [Uncinocarpus reesii 1704] gi|237904541|gb|EEP78942.1| cysteinyl-tRNA synthetase [Uncinocarpus reesii 1704] Length = 692 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 186/348 (53%), Gaps = 38/348 (10%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R F +DP + Y CGPTVYD AH+G+AR + D+L RLLR Y+ Sbjct: 26 LKIWNSLTRSKVPFVPLDPEGRKVTWYACGPTVYDDAHLGHARNYVSTDILRRLLRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERAR-------QEHPSIPINDAISI---ITSKNTQQFVKDTT 112 + V ++ NITD+DDK +A + H S + SI +T + +F+ D Sbjct: 85 KFDVRFIMNITDVDDKPDTKADVMLAYLDKLHGSSICGEDYSIFTKLTKRFEDRFMADAR 144 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRR--- 168 L + R + IP+++ ++ I+ H AY + + FD ++ G+ R Sbjct: 145 ALNIIDADEVTRVSEFIPEIVSFVEQIVQHNFAYVTGDGSVYFDIAAFETVGNHYARLEP 204 Query: 169 ------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM 222 + G + + K++ ADF LWK S P EP W SPWG GRPGWHIECSAM Sbjct: 205 WNRNDTALQADGEGALINKSIEKRSKADFALWKASKPGEPSWPSPWGPGRPGWHIECSAM 264 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQS-------CCADRIEKTANIWIHNGFLNLEG 275 +S LGK DIH GG+DL FPHH+NE+AQS C D+ N ++H G L+++G Sbjct: 265 ASARLGKQMDIHSGGIDLAFPHHDNELAQSEAYWHKGCSHDQW---VNYFLHMGHLSIQG 321 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 KMSKS NF TI E LE + RS +R+ LM + + I+ T Sbjct: 322 SKMSKSLKNFTTIREALERGDWTPRS-----LRIVFLMGSWADGIEIT 364 >gi|171920807|ref|ZP_02695358.2| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225550663|ref|ZP_03771612.1| cysteine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903571|gb|EDT49860.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225379817|gb|EEH02179.1| cysteine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 436 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 156/468 (33%), Positives = 228/468 (48%), Gaps = 63/468 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ ++ E I+ I +Y CGPTVY+ HIGNARP+I DVLYR L+ + Sbjct: 1 MKLYDSYSNQLVE---INDELISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKH--NI 55 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 56 KTKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIIDYIQKLIDKQAGYFIGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IESAANKHNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINTYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNINNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEILLSK-----------WPQTSTSKG 345 + V+R Y++PI F+ + + E EIL K + S Sbjct: 276 --EYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEILKIKNAIYNAKNYLYFNHQLKSLT 333 Query: 346 IIDPAVL--SALYNDLNTVSAIQALH----KLARESTKNHDL------LPIFNASAHILG 393 ID L + +DL+ V + +H K+ KN D+ L ILG Sbjct: 334 QIDHFGLFDERINDDLDFVGIVDLIHISVKKINILIKKNKDMNELKLNLTQLLYMLDILG 393 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I H ++N++ L+ + K + AD +RKQL + G + Sbjct: 394 INFVDLHNDENLA-----LLNTWKNYVDKKDYVKADELRKQLINIGIL 436 >gi|209554323|ref|YP_002284545.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541824|gb|ACI60053.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 436 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 227/468 (48%), Gaps = 63/468 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ ++ E I+ I +Y CGPTVY+ HIGNARP+I DVLYR L+ + Sbjct: 1 MKLYDSYSNQLVE---INDELISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKH--NI 55 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 56 KTKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIIDYIQKLIDKQAGYFIGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IESAANKHNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINTYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNINNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEILLSKWPQTSTSKGIIDPAVLSALY 356 + V+R Y++PI F+ + + E EIL K + + L +L Sbjct: 276 --EYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEILKIKNAIYNAKNYLYFNHQLKSLT 333 Query: 357 -------------NDLNTVSAIQALH----KLARESTKNHDL------LPIFNASAHILG 393 +DL+ V + +H K+ KN D+ L ILG Sbjct: 334 QIDHFGFFDERINDDLDFVGIVDLIHISVKKINILIKKNKDMNELKLNLTQLLYMLDILG 393 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I H ++N++ L+ + K + AD +RKQL + G + Sbjct: 394 INFVDLHNDENLA-----LLNTWKNYVDKKDYVKADELRKQLINIGIL 436 >gi|185178726|ref|ZP_02964542.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024163|ref|ZP_02996889.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518554|ref|ZP_03004015.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225551139|ref|ZP_03772085.1| cysteine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209327|gb|EDU06370.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018795|gb|EDU56835.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997891|gb|EDU66988.1| cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225378954|gb|EEH01319.1| cysteine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 436 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 156/468 (33%), Positives = 228/468 (48%), Gaps = 63/468 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ ++ E I+ I +Y CGPTVY+ HIGNARP+I DVLYR L+ + Sbjct: 1 MKLYDSYSNQLVE---INDELISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKH--NI 55 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 56 KTKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIIDYIQKLIDKQAGYFIGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IESAANKHNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINTYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNINNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEILLSK-----------WPQTSTSKG 345 + V+R Y++PI F+ + + E EIL K + S Sbjct: 276 --EYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEILKIKNAIYNAKNYLYFNHQLKSLT 333 Query: 346 IIDPAVL--SALYNDLNTVSAIQALH----KLARESTKNHDL------LPIFNASAHILG 393 ID L + +DL+ V + +H K+ KN D+ L ILG Sbjct: 334 QIDHFRLFDERINDDLDFVGIVDLIHISVKKINILIKKNKDMNELKLNLTQLLYMLDILG 393 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I H ++N++ L+ + K + AD +RKQL + G + Sbjct: 394 INFVDLHNDENLA-----LLNTWKNYVDKKDYVKADELRKQLINIGIL 436 >gi|108706129|gb|ABF93924.1| Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] gi|108706132|gb|ABF93927.1| Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa Japonica Group] Length = 420 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 106/216 (49%), Positives = 139/216 (64%), Gaps = 8/216 (3%) Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID 171 +L CL PT +PR T+HI +I LI I+ +G AY ++ F + P Y S S RK+D Sbjct: 2 AQLQCLPPTCEPRVTDHIEHIIELITKIMENGKAYAMEGDVYFSVDTFPEYLSLSGRKLD 61 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 G+RV K+NPADF LWK + EP W+SPWGRGRPGWHIECSAMS+HYLG VF Sbjct: 62 HNLAGSRVAVDTRKRNPADFALWKAAKEGEPFWDSPWGRGRPGWHIECSAMSAHYLGHVF 121 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG DLIFPHHENE+AQS A E W+HNGF+N + +KMSKS+ NF TI ++ Sbjct: 122 DIHGGGKDLIFPHHENELAQSRAA-YPESEVKCWMHNGFVNKDDQKMSKSDKNFFTIRDI 180 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 ++ + +R ++ THYR ++ + + L Sbjct: 181 IDL-------YHPMALRFFLMRTHYRGDVNHSDKAL 209 >gi|261839681|gb|ACX99446.1| cysteinyl-tRNA synthetase [Helicobacter pylori 52] Length = 465 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 234/463 (50%), Gaps = 54/463 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVSMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALRGEILANLKFIEELLGIGFKN 402 Query: 399 EHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 403 PSTYFQLGVSESEKQEIESKIEERKRAKEQKDFLKADSIREEL 445 >gi|237844837|ref|XP_002371716.1| cysteinyl-tRNA synthetase, putative [Toxoplasma gondii ME49] gi|211969380|gb|EEB04576.1| cysteinyl-tRNA synthetase, putative [Toxoplasma gondii ME49] Length = 766 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 185/334 (55%), Gaps = 34/334 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N++ EF + + Y CGPTVYD +H+G+AR + FDV+ R++ Y Sbjct: 109 LMVNNSMAGGKVEFVPQKGNRVCWYGCGPTVYDASHMGHARTYVTFDVIRRIMSDYLNYD 168 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--TQQFVKDTTRLACLAPTHQ 122 VT NITDIDDKII+R+ ++ + +T ++F D T L PT Sbjct: 169 -VTMCMNITDIDDKIIKRSTEQ--------GVDFLTLARHWEKEFFNDMTALNVRLPTVV 219 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------------PNYGSFSRRKI 170 R + +IP+++ LI+ I+ +G+ YE+ + FDT + P S R + Sbjct: 220 TRVSEYIPEVVALIERIVKNGYGYESQGSVYFDTQTFRKNEKHVYGRMEPTSVSDEARVL 279 Query: 171 D-EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + E ++G EK H P DF LWK++ EP W+SPWG+GRPGWHIECSAM+ L Sbjct: 280 EGEGELGLTSSEKRH---PCDFALWKKAKEGEPSWDSPWGKGRPGWHIECSAMADSILPF 336 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+DL FPHH+NE+AQS A+ + N ++H+G L++ G KMSKS NFITI Sbjct: 337 PLDIHSGGIDLRFPHHDNELAQSEAANDRPQWVNYFLHSGHLHIHGAKMSKSLKNFITIK 396 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 E L +F R IRL LM + ++++ Sbjct: 397 ECL--SRFTARQ-----IRLLCLMNRWDSFMNYS 423 >gi|294660604|ref|NP_853461.2| cysteinyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)] gi|187608843|sp|Q7NAH7|SYC_MYCGA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|284812267|gb|AAP57029.2| Cysteinyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)] gi|284930959|gb|ADC30898.1| Cysteinyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)] Length = 435 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 206/384 (53%), Gaps = 36/384 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y+TL + + ID + I +YVCGPTVYD HIGN RP++ FDVL RLL + K Sbjct: 1 MKLYDTLTKTNVD---IDANEINIYVCGPTVYDHIHIGNLRPIVTFDVLRRLLEH--SNK 55 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N+TDIDDKII +A++ +N + +T + T + + L P + Sbjct: 56 KVNFVHNLTDIDDKIINQAQR------LNLSEEEVTKRYTSAYFEILDELNIKLPK-IVK 108 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + +I I+ I +AYE + +I FDT+ I +YG S+RK+DEQ G RV + Sbjct: 109 VTDVMSGIIKYIEKIYDKQYAYELDGDIYFDTTRIADYGVLSKRKLDEQISGIRVKSNEN 168 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECS-AMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK+ T W S +G GRPGWH EC+ + + K F IHGGG+DL+FP Sbjct: 169 KTSPNDFVLWKK-TVEGIKWNSRFGLGRPGWHTECAYIIDQEFKQKGFVIHGGGIDLVFP 227 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ + N W+H G+L ++ KMSKS NFI + L+E+ + Sbjct: 228 HHENENAQNLALHN-KNLVNCWVHVGYLLIDNEKMSKSLNNFIYVKHLIESHNYRA---- 282 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------SKGIIDP 349 IR T + +P++F + A+ + K T S ++ Sbjct: 283 ---IRWVFYNTAHTQPLNFDGTIIKAAQKDVEKIISTVNRFRTFLIANKNNIPSSSLVCE 339 Query: 350 AVLSALYNDLNTVSAIQALHKLAR 373 AL+++LN +A + + L + Sbjct: 340 EFKKALFDNLNFANATKVIWDLIK 363 >gi|221481003|gb|EEE19417.1| cysteinyl-tRNA synthetase, putative [Toxoplasma gondii GT1] Length = 684 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 185/334 (55%), Gaps = 34/334 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N++ EF + + Y CGPTVYD +H+G+AR + FDV+ R++ Y Sbjct: 33 LMVNNSMAGGKVEFVPQKGNRVCWYGCGPTVYDASHMGHARTYVTFDVIRRIMSDYLNYD 92 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--TQQFVKDTTRLACLAPTHQ 122 VT NITDIDDKII+R+ ++ + +T ++F D T L PT Sbjct: 93 -VTMCMNITDIDDKIIKRSTEQ--------GVDFLTLARHWEKEFFNDMTALNVRLPTVV 143 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------------PNYGSFSRRKI 170 R + +IP+++ LI+ I+ +G+ YE+ + FDT + P S R + Sbjct: 144 TRVSEYIPEVVALIERIVKNGYGYESQGSVYFDTQTFRKNEKHVYGRMEPTSVSDEARVL 203 Query: 171 D-EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + E ++G EK H P DF LWK++ EP W+SPWG+GRPGWHIECSAM+ L Sbjct: 204 EGEGELGLTSSEKRH---PCDFALWKKAKEGEPSWDSPWGKGRPGWHIECSAMADSILPF 260 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+DL FPHH+NE+AQS A+ + N ++H+G L++ G KMSKS NFITI Sbjct: 261 PLDIHSGGIDLRFPHHDNELAQSEAANDRPQWVNYFLHSGHLHIHGAKMSKSLKNFITIK 320 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 E L +F R IRL LM + ++++ Sbjct: 321 ECL--SRFTARQ-----IRLLCLMNRWDSFMNYS 347 >gi|332673723|gb|AEE70540.1| cysteine--tRNA ligase [Helicobacter pylori 83] Length = 465 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 239/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V E Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQE-- 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 172 -KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 --EHLNKNISIA----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 E+ +S + IE +++R + K F AD IR++L + L D Sbjct: 403 PVEYFQLGVSGSEKQEIENKIEKRKRAKEQKDFLKADRIREELLKQKIALMD 454 >gi|198456470|ref|XP_001360335.2| GA20936 [Drosophila pseudoobscura pseudoobscura] gi|198135626|gb|EAL24910.2| GA20936 [Drosophila pseudoobscura pseudoobscura] Length = 556 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 189/340 (55%), Gaps = 28/340 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN R+ + + + Y CGPTVYD AH+G+A + D++ R+LR Y+ Sbjct: 48 IRVYNNGMRRKVPLILRNQNMVTWYTCGPTVYDSAHLGHASTYVKVDIIQRILRNYFNIN 107 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII +AR D + + + + F +D RL P + Sbjct: 108 LVTAM-NITDVDDKIIRKARDSGC-----DWLGMARTYEAE-FKQDMLRLNVQPPDIRTH 160 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK- 182 T+++P ++ I+ +I HAY +N + FD S P+YG Q++G EK Sbjct: 161 VTSNMPAIVQFIEELINDSHAYVTEDNSVYFDVSKYPHYGKL-------QRLGMSTEEKS 213 Query: 183 -YHKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K+N ADF LWK + EP W +PWG GRPGWHIECSA++ + G D H GGLD Sbjct: 214 DLFKQNSADFALWKAKKEADEPSWAAPWGGEGRPGWHIECSAIAGFFFGHKLDFHAGGLD 273 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKF 297 L FPHHENE AQ C + ++ N W+H G L + G +KMSKS GN I+I+E+L+ Sbjct: 274 LRFPHHENEEAQCCVRYQTDQWVNYWMHTGQLYIAGDEQKMSKSLGNTISISEMLQ---- 329 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 S+ + R+A L+++YR + ++ Q + A L ++ Sbjct: 330 ---SYTSDEFRMACLLSNYRNAMPYSEQLMLTARQTLQRF 366 >gi|171920288|ref|ZP_02691052.2| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902701|gb|EDT48990.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 436 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 127/337 (37%), Positives = 181/337 (53%), Gaps = 35/337 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ ++ E I+ I +Y CGPTVY+ HIGNARP+I DVLYR L+ + Sbjct: 1 MKLYDSYSNQLVE---INDELISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKH--NI 55 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 56 KTKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIIDYIQKLIYKQAGYFIGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IESVANKHNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINTYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNVNNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEIL 333 + V+R Y++PI F+ + + E EIL Sbjct: 276 --EYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEIL 310 >gi|317009539|gb|ADU80119.1| cysteinyl-tRNA synthetase [Helicobacter pylori India7] Length = 465 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 233/470 (49%), Gaps = 50/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K Sbjct: 115 EYLDAMVSMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALANTPYQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L + L D Sbjct: 405 AYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLKQKIALMD 454 >gi|29290062|gb|AAO72326.1| cysteinyl tRNA synthetase [synthetic construct] Length = 465 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 233/470 (49%), Gaps = 50/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K Sbjct: 115 EYLDAMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ C +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCTFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L + L D Sbjct: 405 AYFQLGVSESEKQEIENKIEERKRAKEQKIFLKADSIREELLKQKIALMD 454 >gi|257388228|ref|YP_003178001.1| cysteinyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286] gi|257170535|gb|ACV48294.1| cysteinyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286] Length = 494 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 146/501 (29%), Positives = 236/501 (47%), Gaps = 74/501 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL + F+ DP ++ +Y CG T D AH+G+AR + DV++R L + + Sbjct: 3 LRVTNTLTGEREAFEPRDPDSVLLYYCGLTTSDPAHLGHARGWVHVDVMHRWLAHLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+++KI+ R + ++ + + Q + D L PR Sbjct: 62 -VRHVENFTDVNEKIVARVGEN------GESEADVARHYVQSVIDDMRALNLRRAEVYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+P+++ +++ +I G+AYEAN + FD ++ YG S +++DE + E+ Sbjct: 115 VSEHVPEIVAMVETLIEKGYAYEANGSVYFDVTTFEEYGKLSNQQLDEIEAQGDPDEQSE 174 Query: 185 KKNPADFILWKR---------------STPMEPG------WESPWGRGRPGWHIECSAMS 223 K+NPADF LWK ++P E W+SPW GRPGWHIECSAMS Sbjct: 175 KRNPADFALWKAGGVDPAAIEDHQHEGASPPEAACETAQTWDSPWSEGRPGWHIECSAMS 234 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 + +LG+ DIH GG DL+FPHHENEIAQS A ++ A W+H L +G KMS S G Sbjct: 235 TTHLGETIDIHVGGQDLVFPHHENEIAQSEAATG-QQFARHWLHVRLLETKGEKMSSSLG 293 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQ 339 NF + ++ + V+R +L T Y ++ + EA E L + + Sbjct: 294 NFFAVEAAVD-------EYGTDVVRTFLLSTAYHNSAVYSEATIDEAIERWETLERGYER 346 Query: 340 TSTSKGIIDPAVL------------------SALYNDLNTVSAIQALHKLARESTKNHDL 381 + +D +A+ +D NT A+ AL +L + D Sbjct: 347 AVRACDDVDAYATVEDDTLRTAVTTAREHFETAMNDDFNTREALAALTELVGAVNVHVDE 406 Query: 382 LPIFNASAHILGIEVCKE------------HLNKNISIA---IEKLVQERLILLKMKKFS 426 F+ A +E +E ++S+A +E L+ R + Sbjct: 407 QSSFDYRALREAVETIEELGGGVLGLSFGGSEGGDVSVAEDLVELLLDVREAERAAGNYE 466 Query: 427 SADYIRKQLESKGFILEDYKN 447 AD +R ++ES G ++D + Sbjct: 467 RADELRDEVESLGVEVQDTDD 487 >gi|289064335|gb|ADC80543.1| cysteine aminoacyl-tRNA synthetase [Toxoplasma gondii] Length = 904 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 185/334 (55%), Gaps = 34/334 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N++ EF + + Y CGPTVYD +H+G+AR + FDV+ R++ Y Sbjct: 247 LMVNNSMAGGKVEFVPQKGNRVCWYGCGPTVYDASHMGHARTYVTFDVIRRIMSDYLNYD 306 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--TQQFVKDTTRLACLAPTHQ 122 VT NITDIDDKII+R+ ++ + +T ++F D T L PT Sbjct: 307 -VTMCMNITDIDDKIIKRSTEQ--------GVDFLTLARHWEKEFFNDMTALNVRLPTVV 357 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------------PNYGSFSRRKI 170 R + +IP+++ LI+ I+ +G+ YE+ + FDT + P S R + Sbjct: 358 TRVSEYIPEVVALIERIVKNGYGYESQGSVYFDTQTFRKNEKHVYGRMEPTSVSDEARVL 417 Query: 171 D-EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + E ++G EK H P DF LWK++ EP W+SPWG+GRPGWHIECSAM+ L Sbjct: 418 EGEGELGLTSSEKRH---PCDFALWKKAKEGEPSWDSPWGKGRPGWHIECSAMADSILPF 474 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+DL FPHH+NE+AQS A+ + N ++H+G L++ G KMSKS NFITI Sbjct: 475 PLDIHSGGIDLRFPHHDNELAQSEAANDRPQWVNYFLHSGHLHIHGAKMSKSLKNFITIK 534 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 E L +F R IRL LM + ++++ Sbjct: 535 ECL--SRFTARQ-----IRLLCLMNRWDSFMNYS 561 >gi|300708706|ref|XP_002996527.1| hypothetical protein NCER_100366 [Nosema ceranae BRL01] gi|239605836|gb|EEQ82856.1| hypothetical protein NCER_100366 [Nosema ceranae BRL01] Length = 467 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 159/487 (32%), Positives = 246/487 (50%), Gaps = 74/487 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L +K+ F IDP+N+++Y+CGPTVYD +HIG+AR + FDV+ +L Y+ Sbjct: 2 LKIYNSLTKKLEIFNPIDPNNVKIYICGPTVYDHSHIGHARTYVSFDVIRNILEKYFNYN 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V NITDIDDKII ++++ S+ IT K T F++D L PT + Sbjct: 62 -VTFVMNITDIDDKIINKSKETGMSM------KDITVKYTNLFLEDMALLNVRKPTVLTK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKIDEQKMGTRVPE 181 T ++ ++ ++ + +G+AYE+N + FD Y F ++ +G P Sbjct: 115 VTEYVDKIKEYVKILENNGYAYESNGSVYFDVMEYKKKFKYPIFREETVNN--LGDS-PN 171 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KK+P DF LWK+ ++ +G GRPGWHIECS M++ LG DIH GG+DL Sbjct: 172 IQDKKSPLDFALWKK--------DNLFGSGRPGWHIECSVMANDVLGDYIDIHAGGVDLK 223 Query: 242 FPHHENEIAQSCCADRIEKT--ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ C R +K N ++H G LN+ G KMSKS NF TI +LE Sbjct: 224 FPHHENEIAQ--CQARYQKKPWVNYFMHTGHLNINGLKMSKSLKNFTTIKSILE------ 275 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE----------ILLSKWPQTSTSKGIIDP 349 R P +R+ L + + +++ +++ A+ + ++ S D Sbjct: 276 RCTPIQ-LRILFLYHQWNKDMNYEEEQIKFAQNVEKKIFNFFMYVNSINNISKIYNKNDI 334 Query: 350 AVLS-----------ALYNDLNTVSAIQALHKLARESTKNHDLLP---------IFNASA 389 VL + N+ +T S I+AL +L + DL+ Sbjct: 335 EVLDLISKTSKIVDVSFSNNFDTPSVIKALLELVSFTNSKLDLVSACTLYQVRDFVKRIL 394 Query: 390 HILGI---EVCKEHLNKNISIAIEKLVQERLILLKMKK-------FSSADYIRKQLESKG 439 ILGI E ++ ++N++ I + I + +KK ++ D +R L+ G Sbjct: 395 DILGINKEEKVRDEDSENLAKLIN--IFRNKIRMALKKGVNKKDLYNICDEVRDNLKDLG 452 Query: 440 FILEDYK 446 ++LED K Sbjct: 453 YVLEDSK 459 >gi|13357680|ref|NP_077954.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761946|ref|YP_001752206.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508782|ref|ZP_02958248.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|24418701|sp|Q9PR21|SYC_UREPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|11271610|pir||H82930 cysteinyl-tRNA synthetase UU123 [imported] - Ureaplasma urealyticum gi|6899081|gb|AAF30529.1|AE002113_3 cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827523|gb|ACA32785.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675727|gb|EDT87632.1| cysteinyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 436 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 127/337 (37%), Positives = 181/337 (53%), Gaps = 35/337 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ ++ E I+ I +Y CGPTVY+ HIGNARP+I DVLYR L+ + Sbjct: 1 MKLYDSYSNQLVE---INDELISIYNCGPTVYNHIHIGNARPLITMDVLYRFLKKH--NI 55 Query: 65 CVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 YV NITDIDDKII A E N+ + I + NT + + Sbjct: 56 KTKYVLNITDIDDKIINYALANNLKELEVSEYYFNEYLKIKKALNTLEMI---------- 105 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+ + H+ ++I IQ +I Y +++ FDT NYG S+R ++ +G R Sbjct: 106 ---NPKVSTHMDKIIDYIQKLIDKQAGYFIGDDVYFDTKKALNYGQLSKRDLENDIVGMR 162 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + +K NP DFILWK+ T W +PWG GRPGWH ECS + + Y+G+ IHGGG+ Sbjct: 163 IESAANKHNPNDFILWKK-TNKGIMWNTPWGIGRPGWHSECSCLINTYIGEQVSIHGGGI 221 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE AQ+ + A +W+H G +N+ KMSKS NFI + +LL Sbjct: 222 DLKFPHHENENAQNQVLYN-KNLAKVWMHFGLVNINNEKMSKSLNNFILVKDLLA----- 275 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT--VQRLTEAEIL 333 + V+R Y++PI F+ + + E EIL Sbjct: 276 --EYDYQVVRWFFYQADYKQPIKFSHEIMKQNEKEIL 310 >gi|317182191|dbj|BAJ59975.1| cysteinyl-tRNA synthetase [Helicobacter pylori F57] Length = 465 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 237/472 (50%), Gaps = 54/472 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ S+ +I I + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKENKSVQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKY 183 ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 115 EYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKR 173 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGG 237 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 174 LEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGG 230 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 231 ADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL----- 284 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP---- 349 +++ ++R +L HYR ++F + L ++ L K + + G I+P Sbjct: 285 --KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKK 342 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCK 398 +L + +DLN A+ L + + D +L +LGI Sbjct: 343 EILECMQDDLNISKALSVLESMLSSMNEKLDQNPKNKALKGEILANLKFIEELLGIGFKD 402 Query: 399 EHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER + K F AD IR++L + L D Sbjct: 403 PSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLKQKIALMD 454 >gi|223996950|ref|XP_002288148.1| probable cysteinyl-trna synthetase [Thalassiosira pseudonana CCMP1335] gi|220975256|gb|EED93584.1| probable cysteinyl-trna synthetase [Thalassiosira pseudonana CCMP1335] Length = 474 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 160/494 (32%), Positives = 240/494 (48%), Gaps = 72/494 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R T F + ++ MY CGPTVYD AH+GN R + +DVL R+L Y + Sbjct: 1 LTLYNSLTRSKTPFTPLRSPSVSMYTCGPTVYDSAHVGNFRAFLTYDVLKRVLLYLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISII--TSKNTQQFVKDTTRLACLAPTHQ 122 V +V N+TD+DDKII+R +E +S+I T K +F +D L + Sbjct: 60 -VDHVCNLTDVDDKIIKRCERE--------GVSLIELTRKFEGKFFEDLEALNIIKAREY 110 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQ-------K 174 PRAT HI +M LI ++ +G AY++ F S YG+ + EQ + Sbjct: 111 PRATEHIDEMAKLILDLERNGLAYQSEEGSWYFSVSKKEGYGTRLVQLDPEQLKIGASAQ 170 Query: 175 MGTRVPEKY--HKKNPADFILWKRSTPMEPGWESPW---------GRGRPGWHIECSAMS 223 G+ ++Y K+ DF LWK P ++ W GRGRPGWH+ECSAM+ Sbjct: 171 RGSLDADEYDTEKEGVRDFCLWKAYKPEFDREDATWDPDGVTRNIGRGRPGWHLECSAMA 230 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 YLG D+H GG+DL FPHHENEIAQS A+ N WIHNGF+N+ KMSKS G Sbjct: 231 RKYLGDTIDLHAGGVDLKFPHHENEIAQSEGAN-CAPFCNCWIHNGFVNIGDEKMSKSKG 289 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEIL 333 NF+T+ T R ++ + YR P+ FT ++RL + + L Sbjct: 290 NFLTLRGACPTAD------DVRAYRYLVVSSQYRNPLSFTDAALGAAKGALKRLDKVKTL 343 Query: 334 LSKWPQTST-SKGIIDPAVLS----ALYNDLNTVSAIQALHKLARESTK----------N 378 L + ++S + G L+ A+ +DL+ A L + + + K Sbjct: 344 LDEALESSNDNSGDASAEKLTNFEVAIADDLSMPRASACLFSIVKAAEKEFKRVDKAKDE 403 Query: 379 HDLLPIFNASAHILGIEVCKEHLNK-----NISIAIEKLVQERLILLKMKKFSSADYIRK 433 D P + ++G++ ++ L+ I + LV +R K + AD +R Sbjct: 404 DDNAPPLD----LVGLQRVRDALDLMDNVFEIPQDVMDLVVQRSAAKDAKDWDLADSLRT 459 Query: 434 QLESKGFILEDYKN 447 ++ GF ++D K Sbjct: 460 RITELGFAVKDVKG 473 >gi|237750277|ref|ZP_04580757.1| cysteinyl-tRNA synthetase [Helicobacter bilis ATCC 43879] gi|229374171|gb|EEO24562.1| cysteinyl-tRNA synthetase [Helicobacter bilis ATCC 43879] Length = 499 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 161/520 (30%), Positives = 245/520 (47%), Gaps = 87/520 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ R + ++ + IRMY+CGPTVYD AH+G+AR I FD+L R L G K Sbjct: 1 MKVYDSKHRDKIDLVPLNSNEIRMYICGPTVYDDAHLGHARSAISFDLLARFLE-TKGYK 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +N TDIDDK+I ++ Q P+N+ + ++++D L +PR Sbjct: 60 VIV-AKNFTDIDDKLINKSFQ--TKTPLNE----LAKHYIDKYLQDMEPLNVRRAHFEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M I++++ AY N +I + S +YG+ SR +D+ RV + Sbjct: 113 ATEFLESMSNFIESLLQKDIAYRLPNGDICLEVSKDKSYGTLSRH-LDDTDSVHRVEVEE 171 Query: 184 HKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLG---KVF--DIHGGG 237 K++ DF+LWK + G+ES G+GRPGWHIECSAM L K F DIH GG Sbjct: 172 GKRDQRDFVLWKAYKGENDIGYESILGKGRPGWHIECSAMIDSVLAYKDKEFCIDIHAGG 231 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENE +Q+ C E A W+HNGF+ + G KMSKS GN I + L Sbjct: 232 QDLFFPHHENEASQTRCLHNKE-LAKYWLHNGFVTINGEKMSKSLGNSFFIKDAL----- 285 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK------------------WPQ 339 + + ++R ++ THYR P+ F + L +++ L K P Sbjct: 286 --KVYHGEILRNYLIGTHYRSPLHFNEEDLLQSKKRLDKIYRLKKRLDYEKDSIPKFLPF 343 Query: 340 TSTSKGI-----------------------IDPAVLSALYNDLNTVSAIQALHKLAREST 376 ++ + I L +L +DLN A+ + + +E+ Sbjct: 344 SNDTDSIKANEWEEFFKPYMSEILKQATKDFSEKFLESLSDDLNISLALSVIEEFIKEAN 403 Query: 377 KNHDLLP---IFNASAHI----------LGIEVCKEHLNKNIS----IAIEKLVQERLIL 419 ++ D P + A A LG E+ +S + IE L++ERL Sbjct: 404 EHLDTQPKDKAYKAQAKANLALIDFVLGLGTLSYSEYFQLGVSDEEKLKIETLIKERLEA 463 Query: 420 LKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +K F AD IR LE+ G + D + T W++ Sbjct: 464 KAVKDFVKADSIRNTLENMGISI-----MDKSKEHTEWEK 498 >gi|219115755|ref|XP_002178673.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410408|gb|EEC50338.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 647 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 192/345 (55%), Gaps = 33/345 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRM--YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ I N+L R+ F +D S+ RM Y+CGPTVY +H+G+AR + FD++ R+L ++ Sbjct: 33 RLWITNSLTRQKEHFLTMDGSS-RMVWYMCGPTVYAPSHMGHARTYLGFDIIRRILERHF 91 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G VT V N+TDIDDKIIERA ++H + + +F +D L PT Sbjct: 92 GYH-VTLVMNVTDIDDKIIERAAEQHV------GHLQLARRYEAEFHQDMADLGVAPPTT 144 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT---- 177 R T ++ ++ I NII G AYE+N + FD + + K+ +++G Sbjct: 145 LTRVTEYMDEVTAYIANIIQRGFAYESNGSVYFDVQTFSDTPHMHYCKLAPEQVGNAELL 204 Query: 178 -----RVPEKY--HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 ++ + + K++P DF LWK++ P EP W+SPWG GRPGWHIECS M+S L ++ Sbjct: 205 AEGEGKLTQDFVTDKQSPRDFALWKKTKPGEPSWDSPWGPGRPGWHIECSVMASDVLDRL 264 Query: 231 F-----DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 D+H GG+DL FPHH+NE+AQ+ + N ++H G L+++G KMSKS NF Sbjct: 265 LQHRRMDLHSGGVDLKFPHHDNEMAQAEAECGETQWVNYFVHAGHLHIKGLKMSKSLKNF 324 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ITI + LE A IR+ L+ Y +D+ +T A Sbjct: 325 ITIQQALEINS-------ARQIRMLFLLHKYNAQMDYGDNTMTHA 362 >gi|307204345|gb|EFN83100.1| Cysteinyl-tRNA synthetase, mitochondrial [Harpegnathos saltator] Length = 511 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 137/393 (34%), Positives = 205/393 (52%), Gaps = 47/393 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++ +YN + R + ++ Y+CGPTVYD AHIG+A I D++ R+L ++ Sbjct: 31 QTEVVVYNPVTRCKVPLILKTKNVLKWYMCGPTVYDSAHIGHATTYIKSDIIRRILTDHF 90 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V V ITDIDDKII+ A + + + +F++D RL P Sbjct: 91 NID-VLLVMGITDIDDKIIKCALESKQDFKA------LARRFEMEFLEDMNRLNVREPYI 143 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 R T+++P++++ ++ +I G+ Y + + FDT+ YG K+ P Sbjct: 144 YCRVTDYVPRIVHFVEKLIASGYGYILKDGSVYFDTNKYNRYG----------KISIPSP 193 Query: 181 EKYH--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + H KK+ DF LWK EP WESPWGRGRPGWHIECSA++S G D+H GG+ Sbjct: 194 DATHPDKKSTLDFALWKAGKSDEPFWESPWGRGRPGWHIECSAIASAVFGNSIDVHSGGI 253 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR-KMSKSNGNFITINELLETKKF 297 DL FPHHENE AQSCC +++ N W+H G L+L+G KMSKS N ++I + L+ Sbjct: 254 DLAFPHHENEEAQSCCYHGVDQWVNYWLHCGHLHLKGDVKMSKSLRNTVSIRDYLD---- 309 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSK---GII 347 + A +R L++HYR I+F+ + + A E +S + K G I Sbjct: 310 ---KYSANQLRTLCLLSHYRNGIEFSDEVMQNAVSVTKKIENFISDSDTYTAGKLQAGEI 366 Query: 348 DPAVL---------SALYNDLNTVSAIQALHKL 371 D +L SAL +D +T A+ A+ L Sbjct: 367 DENLLLTNTRSKVDSALADDFDTSRAMHAILNL 399 >gi|307181000|gb|EFN68774.1| Cysteinyl-tRNA synthetase, mitochondrial [Camponotus floridanus] Length = 518 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 190/370 (51%), Gaps = 43/370 (11%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 ++ Y+CGPTVYD AHIG+A I D++ R+L Y+ + V ITDIDDKII+ Sbjct: 58 LKWYMCGPTVYDSAHIGHAATYIKSDIIRRILSNYFNID-ILLVMGITDIDDKIIK---- 112 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 SI ++ +F D +L P R T++IPQ+I+ ++ ++ + Sbjct: 113 --CSIESGKDFKTLSKHFETEFYADMNKLNIGEPYLYCRVTDYIPQIIHFVEELLTRNYG 170 Query: 146 Y-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y + + FDT+ YG D K ++ P+K K+ DF LWK + EP W Sbjct: 171 YITKDGSVYFDTNKYNKYGKLKTSVHDVVK--SQHPDK---KSALDFALWKAAKNNEPSW 225 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 PWG GRPGWHIECSA++S G DIH GG+DL FPHHENE AQSCC + + N Sbjct: 226 RCPWGYGRPGWHIECSAIASAVFGNSVDIHSGGIDLAFPHHENEEAQSCCYHNVNQWVNY 285 Query: 265 WIHNGFLNLEGR-KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+H G LNL+G KMSKS N I+I LE + A +R+ L++HYR I+F+ Sbjct: 286 WLHCGHLNLKGDVKMSKSLKNTISIQNYLE-------EYSANHLRMLCLLSHYRNDIEFS 338 Query: 324 VQRLTEAEILLSKWPQ----------TSTSKGIIDPAVL------------SALYNDLNT 361 + + A ++ K+ G ID +L SAL +D NT Sbjct: 339 DEVMQNAVLVTQKFDNFINDCDNYVVGKFETGDIDENLLFTTLYDTRNKVYSALADDFNT 398 Query: 362 VSAIQALHKL 371 AI A+ L Sbjct: 399 SKAIHAIINL 408 >gi|300123539|emb|CBK24811.2| unnamed protein product [Blastocystis hominis] Length = 595 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/416 (33%), Positives = 206/416 (49%), Gaps = 63/416 (15%) Query: 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIER 82 P + Y CGPTVYD AH+G+AR + D++ R+LR Y+ V +V NITDIDDKII+R Sbjct: 3 PRKVLWYSCGPTVYDVAHMGHARTYLSQDIIMRILRDYFNYD-VQFVMNITDIDDKIIKR 61 Query: 83 ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH 142 + + IP + + K +F++D L C R + ++ ++I +IQ II + Sbjct: 62 STE--AGIPFTE----LARKYENEFMEDMKTLGCRTANVITRVSEYVDEIIEMIQGIINN 115 Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG-TRVPE-------------KYHKKNP 188 G+AYEAN + FDT+S + + + + VPE K++P Sbjct: 116 GYAYEANGSVYFDTTSFQKNHVYGKLSTAHAVLSLSLVPEMVGNVNTEEEQDFASEKRHP 175 Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV----FDIHGGGLDLIFPH 244 DF LWK S P EP W SPWG GRPGWHIECSAMS + D+H GG+DL PH Sbjct: 176 NDFALWKASKPGEPMWNSPWGAGRPGWHIECSAMSFSIFKTISDGRIDVHSGGVDLRLPH 235 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H NE+AQS ++ N ++H G LN++G KMSKS NFITI + L+ + Sbjct: 236 HTNEMAQSEAYMECSQSVNYFLHTGHLNIDGLKMSKSLKNFITIRQTLQ-------QFTP 288 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEI------------------LLSKWPQTSTSKGI 346 IR+ L+ + ++++ + EA L + PQ + Sbjct: 289 SQIRIYFLLHKWNTTMNYSDGAMEEARAKEKLFAEFFHNVKATLRQLTADQPQRWDDAEV 348 Query: 347 -----IDPA---VLSALYNDLNTVSAIQALHKLARE-----STKNHDLLPIFNASA 389 +D A V + L +D +T A++AL L R T H + P+ + A Sbjct: 349 QLNAQLDAARTSVHTCLCDDFDTAGAMEALEGLVRAVYRYLETAKHIVAPLVLSCA 404 >gi|284165104|ref|YP_003403383.1| cysteinyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511] gi|284014759|gb|ADB60710.1| cysteinyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511] Length = 498 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 144/503 (28%), Positives = 238/503 (47%), Gaps = 77/503 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL + F+ DP ++ +Y CG TV D H+G+AR + DV++R L Y + Sbjct: 3 LHVTNTLTGEKEPFEPRDPESVLLYYCGLTVSDPPHLGHARSWVHVDVMHRWLEYIGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TDI++KI+ R ++ + + + ++ + D L L PR Sbjct: 62 -VRHVENFTDINEKIVARVGED----DLGEDELHVAETYIERTLADMRSLNLLRAEVYPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+P++I L++ ++ G+AYE+N + FD +S YG S +++DE + E+ Sbjct: 117 VSEHVPEIIDLVETLVEEGYAYESNGSVYFDVTSFEEYGKLSNQELDEIESQGDPDERSE 176 Query: 185 KKNPADFILWKR---------------STPMEPG------WESPWGRGRPGWHIECSAMS 223 K++PADF LWK + P E WESPWG GRPGWHIECSAMS Sbjct: 177 KRHPADFALWKAGGVDESAIEEHRHEGAAPAEEACETSQTWESPWGEGRPGWHIECSAMS 236 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +L + DIH GG DL+FPHHENE+AQS A + AN W+H ++ KMS S G Sbjct: 237 MTHLDETLDIHVGGRDLVFPHHENEVAQSEAA-TGQAFANYWLHCELFQMDDEKMSSSLG 295 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---- 339 NF+T+++ ++ W V+R + Y ++ + + EAE +W + Sbjct: 296 NFVTVDDAVD-------QWGTNVLRTFLTAGSYNSKQLYSDETIAEAE---ERWDRLERA 345 Query: 340 -TSTSKGIIDP--------------------AVLSALYNDLNTVSAIQALHKLARESTKN 378 + + + P + ++A+ +D NT A AL +A + Sbjct: 346 YEAAVEAVDSPDARTKVEDASFRDEIETARESFVAAMNDDFNTREAQSALLSVATAINAH 405 Query: 379 ------------HDLLPIFNASAHILGIEVCKEHLN-KNISIAIEKLVQE-RLILLKMKK 424 D + + +LG+ E +++ + LV E R + Sbjct: 406 LEDRAEYDYRGLRDAVDVLEELGAVLGLSFAGETTGTADLAGDVVDLVLEVREREREAGN 465 Query: 425 FSSADYIRKQLESKGFILEDYKN 447 + AD +R +L++ G ++D + Sbjct: 466 YERADDLRDELQALGIEVQDTDD 488 >gi|109121280|ref|XP_001083935.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial isoform 3 [Macaca mulatta] Length = 563 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 129/332 (38%), Positives = 183/332 (55%), Gaps = 24/332 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 51 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFG-- 108 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C + V ITD+DDKII+RA + +N + + + S + F +D L L PT Sbjct: 109 CNIVMVMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYL 162 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II GHAY A + FD S + YG + +G P Sbjct: 163 RVTENIPQIISFIEGIIARGHAYSTAKGNVYFDLKSRGDKYGKLV--GVVPGPVGE--PA 218 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL Sbjct: 219 DSDKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLA 278 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + E+ N ++H+G L+++G+ KMSKS N+ITI + L+T Sbjct: 279 FPHHENEIAQCEVFHQCEQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKT----- 333 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 + V R L + YR ID++ + A+ Sbjct: 334 --FSPDVFRFFCLRSSYRSAIDYSDSAMLHAQ 363 >gi|194883178|ref|XP_001975680.1| GG22443 [Drosophila erecta] gi|190658867|gb|EDV56080.1| GG22443 [Drosophila erecta] Length = 560 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/391 (36%), Positives = 199/391 (50%), Gaps = 45/391 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYN R+ +P Y CGPTVYD AH+G+A + D+L R+LR Y+ Sbjct: 48 INIYNHGLRQKVPLILRNPQMATWYTCGPTVYDSAHLGHASTYVKVDILQRILRDYFKIN 107 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII+RA+ + D + + + F +D RL + Sbjct: 108 LVTAM-NITDVDDKIIKRAQ-----LAGLDWQKMARAYEAE-FRQDMLRLNVQPADVRSH 160 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T +P +I IQ +I AY +N + FD S NYG + E+K+ Sbjct: 161 VTTTMPVIIQFIQQLIDEKQAYVTPDNSVYFDVSKSQNYGKLQNIGLSEEKL----ERGS 216 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK R + EP W +PWG GRPGWHIECSA++ + G+ D H GGLDL Sbjct: 217 IKRNSADFALWKARKSSGEPTWAAPWGGEGRPGWHIECSAIAGLFFGRQLDFHAGGLDLR 276 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + E+ N W+H G L++ G +KMSKS GN I+++ELL Sbjct: 277 FPHHENEEAQCCARYKTEQWVNYWLHTGQLHMVGDHQKMSKSLGNTISVSELL------- 329 Query: 300 RSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTSKGIIDP 349 + + A R+A L+++YR + + T+QR + LS + Q ++D Sbjct: 330 KKYTADEFRMACLLSNYRNAMPYSDQLMLTARQTLQRFKNFQADLSAYTQFLKPIHLLDE 389 Query: 350 AVLSA------------LYNDLNTVSAIQAL 368 L A L +D +T AI L Sbjct: 390 GALKAQLTHTVTELDNCLRDDFDTARAISVL 420 >gi|254779493|ref|YP_003057598.1| cysteinyl-tRNA synthetase [Helicobacter pylori B38] gi|254001404|emb|CAX29397.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Helicobacter pylori B38] Length = 465 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 230/461 (49%), Gaps = 50/461 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLIQNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ Sbjct: 61 MLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 ++ M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K Sbjct: 115 EYLDAMVCMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEK 172 Query: 186 KNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLD 239 + DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG D Sbjct: 173 RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFETLALANTPYQIDIHAGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE Q+ C +E A W+HNGF+N+ KMSKS GN I + L Sbjct: 233 LLFPHHENEACQTRCTFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AV 351 +++ ++R +L HYR ++F + L ++ L K + + G I+P + Sbjct: 285 KNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEI 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEH 400 L + +DLN A+ L + + + D +L +LGI Sbjct: 345 LECMQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPS 404 Query: 401 LNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQL 435 + ++ IE ++ER + K F AD IR++L Sbjct: 405 AYFQLGVSESEKQEIESKIEERKRAKERKDFLKADSIREEL 445 >gi|73989537|ref|XP_534184.2| PREDICTED: similar to CG8257-PA [Canis familiaris] Length = 628 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 205/373 (54%), Gaps = 44/373 (11%) Query: 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 ++ +Y CGPTVYD AH+G+A + FD++ R+L +G V V ITD+DDKII RA Sbjct: 137 DLLLYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGYN-VIMVMGITDVDDKIIHRAS 195 Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 + +N + + + + ++F +D L L PT R T IPQ+I I+ II +GH Sbjct: 196 E------MNVSPASLANLYEEEFKQDMAALKVLPPTVYVRVTETIPQIISFIEGIIANGH 249 Query: 145 AYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEP 202 AY A + FD S + YG + +G P K++ +DF LWK + P E Sbjct: 250 AYSTAQGNVYFDLQSRGDKYGKLV--GVVPGPLGE--PVDSDKRHASDFALWKAAKPQEV 305 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W SPWG+GRPGWHIECS +SS G DIH GG+DL FPHHENEIAQ + ++ Sbjct: 306 FWASPWGKGRPGWHIECSTISSLVFGSQLDIHSGGVDLAFPHHENEIAQCEAFHQCKQWG 365 Query: 263 NIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 N ++H+G L+++G+ KMSKS N+ITI + L+T + V RL + + YR I Sbjct: 366 NYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKT-------FSPDVFRLFCMRSSYRAAI 418 Query: 321 DFTVQRLTEAEILL---SKWPQTSTS--KG--IIDP---------------AVLSALYND 358 D++ + EA+ LL + + + + + KG + P AV +AL +D Sbjct: 419 DYSDGTMLEAKHLLLVVAAFVEDARAYMKGQLVCGPIRDDVLWERLCHTQEAVKAALADD 478 Query: 359 LNTVSAIQALHKL 371 NT +A+ A+ L Sbjct: 479 FNTPAAVDAIMDL 491 >gi|255513529|gb|EET89795.1| cysteinyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 482 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 238/490 (48%), Gaps = 75/490 (15%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ IYNTL R + EF+ + M+VCG T YD AH+G+AR IVFDV+ R LR+ + Sbjct: 2 KLHIYNTLSRSVEEFKPRLEGKVDMFVCGQTPYDDAHLGHARNYIVFDVVVRWLRHLGYD 61 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIP----------INDAISIITSKNTQQFVKDTTR 113 V Y++NITDI+DKII RA++ + + D +I KN Q++ Sbjct: 62 --VRYIQNITDIEDKIINRAKERGITAEELERYYEKRFLEDMEAIGVKKNVTQYL----- 114 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 R+ ++I M+ IQ ++ G+AY+ +++I +D +Y S K+ EQ Sbjct: 115 ----------RSHDYIDTMVMQIQMLLDGGYAYQIDSDIYYDVDKFVDYTKLSGMKL-EQ 163 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSAMSSH 225 R+ + K+N DF LWK S P EP W+ GRPGWHIE +AM+ Sbjct: 164 LKEHRIEPREGKRNVYDFALWKGSKPGEPSWKIKLRIGGNEIEFVGRPGWHIEDTAMTYA 223 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 G +DIHGG +LIFPHH NEIAQ+ A W+H G LN+ KMSKS NF Sbjct: 224 VFGPQYDIHGGASELIFPHHSNEIAQAEAAFGKVPFVRYWMHAGVLNVNNIKMSKSLKNF 283 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL----------- 334 ITI E+L + A +RL M+ THYR+ I++T + + EA+ L Sbjct: 284 ITIREIL-------GKYDAEALRLLMVSTHYRKEINYTERLIKEAQEKLDYMYNSMGVLY 336 Query: 335 -SKWPQTSTSKGIIDPAV-----LSALYN-DLNTVSAIQALHKL---------ARESTKN 378 +K + + + AV L N D NT A+ L + S + Sbjct: 337 NAKEGNDAEGNDLAEKAVKLDSRFEELMNADFNTSVAVMELFGAFSDIRSYFESNRSIGH 396 Query: 379 HDLLPIFNA---SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ- 434 + ++ + A LG+ + A+E L++ R L KKF AD IR++ Sbjct: 397 SNKETVYKSLLKCAGALGLLESDAYKTGLEDEAME-LIKTREKLRVQKKFEDADRIRQEL 455 Query: 435 LESKGFILED 444 LE G LED Sbjct: 456 LEKYGLALED 465 >gi|148927563|ref|ZP_01811041.1| cysteinyl-tRNA synthetase [candidate division TM7 genomosp. GTL1] gi|147887091|gb|EDK72581.1| cysteinyl-tRNA synthetase [candidate division TM7 genomosp. GTL1] Length = 484 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 240/497 (48%), Gaps = 75/497 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT RK+ EF ++P + +Y CGPTVYD+ +GN I +D L R LR Sbjct: 2 LTLYNTPHRKLEEFTPVEPGKVSVYTCGPTVYDYLTVGNWIAYIRWDTLVRTLRA--NGL 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT+ NITD+ +DK+ + AR+E + I + T F++ +L Sbjct: 60 AVTHAMNITDVGHLTSDEDHGEDKMQKGARREGKTA------WDIAAFYTNDFLEGMKQL 113 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L P H P+AT +IPQ + L++ + G Y+ ++ I FDTS P Y F+ +D K Sbjct: 114 NLLTPEHIPKATEYIPQQLELVRALKQKGFTYQIDDGIYFDTSKFPRYAQFAHLDLDALK 173 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPME---PGWESPWG--------RGRPGWHIECSAMS 223 G RV K++P+DF LWK + P E W++P +G PGWH+ECSAM+ Sbjct: 174 AGARVEHNAKKRSPSDFALWKFTQPGEIRDMEWDTPIDLLDEGEPRKGFPGWHLECSAMA 233 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA-DRIEKTANIWIHNGFLNLEGRKMSKSN 282 G DIH GG+D I HH NEIAQS A D++ A WIH + +G K+SKS Sbjct: 234 MDIFGPTLDIHAGGIDHIPVHHTNEIAQSEAATDKL--FARYWIHCNHIKADGTKISKSL 291 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS- 341 GN T+ + L T+ F + R L +HYR +FT + L A+ + W + + Sbjct: 292 GNGYTLQD-LATRDFSPLDY-----RTFALQSHYRTEGNFTWENLEGAKNRRAHWREIAA 345 Query: 342 ----TSKGIIDPA-----------------VLSALYNDLNTVSAIQALHKLARESTKN-- 378 T ++D + +L AL +DLNT A+Q + ++ E K+ Sbjct: 346 LRWQTYDTLVDDSEKTTDERTVQLINARQEILLALNDDLNTPLALQIIDEVFSELEKHRP 405 Query: 379 --------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 DLL + +LGI++ +IS ++L+ ER + K F +D Sbjct: 406 VDIQQSALEDLLTFID---DVLGIKLLDS--TPDISDEAKQLILERQQAREAKDFKKSDE 460 Query: 431 IRKQLESKGFILEDYKN 447 +R L L D ++ Sbjct: 461 LRDTLLKHNIGLRDTQS 477 >gi|50364902|ref|YP_053327.1| cysteinyl-tRNA synthetase [Mesoplasma florum L1] gi|61216193|sp|Q6F230|SYC_MESFL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50363458|gb|AAT75443.1| cysteinyl-tRNA synthetase [Mesoplasma florum L1] Length = 441 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 231/463 (49%), Gaps = 48/463 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+++TL + E + I+ I +Y CGPT+YD+ HIGNARP+I+ D L R L G K Sbjct: 1 MKLFDTLTQ---EQKNINKEVINIYSCGPTIYDYIHIGNARPIILMDTLIRFLE-SEGIK 56 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++NITDIDDKIIE+A QE N IT K F+++ L P Sbjct: 57 -VNFLQNITDIDDKIIEKAIQE------NKTEKEITDKYLSAFLQNLKDLKIRMPDKLIP 109 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKY 183 + I +M I +++ AY + ++ FD + YG S +KI++ G RV + Sbjct: 110 ISEKISEMNLFIDDLVKLEAAYNVDGDVYFDIQKFSDEYGKLSNKKINDLISGNRVEIED 169 Query: 184 HKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDL 240 K NP DF +WK++ E G ++S +G+GRPGWH EC+ + Y G+ DIH GG+DL Sbjct: 170 KKNNPLDFSVWKKT---EKGITFDSNFGKGRPGWHTECALLIDEYFKGETIDIHSGGIDL 226 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE Q A ++ ++IW+HNG L + G KMSKS GN +T+ L Sbjct: 227 QFPHHENERIQ-FIAKHGKEISDIWVHNGHLTINGEKMSKSLGNTMTLTNFL-------A 278 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------------TSKGIID 348 ++ + ++R L T+Y++P++ + +A + K S D Sbjct: 279 NYNSDILRWIFLTTYYKQPLNINDDLIEQANKFIQKINNLSKKIKQLLIENKFVKTNQFD 338 Query: 349 PAVLSA----LYNDLNTVSAIQALHKLARESTK------NHDLLPIFNASAHILGIEVCK 398 ++ + NDLNT + L ++ K DL N+ +IL Sbjct: 339 EEIIKQFKIHMKNDLNTSRVLTLLEDTLKDINKLSTLKEFDDLFLKINSLNYILKTLGLS 398 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 ++N +S + L ++ K F AD IRK L SKG + Sbjct: 399 ININTFVSDEEQNLFLLWKKIVSEKDFEKADEIRKVLISKGIL 441 >gi|55378085|ref|YP_135935.1| cysteinyl-tRNA synthetase [Haloarcula marismortui ATCC 43049] gi|68052897|sp|Q5V2M3|SYC_HALMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|55230810|gb|AAV46229.1| cysteinyl-tRNA synthetase [Haloarcula marismortui ATCC 43049] Length = 492 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 153/506 (30%), Positives = 244/506 (48%), Gaps = 85/506 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ NTL + F+ DP ++ +Y CG T D H+G+AR + DV+ R L Y + Sbjct: 3 LRVTNTLTGEKEPFEPRDPDSVLLYYCGLTTSDPPHLGHARGWVHVDVMARWLDYLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N+TD+++KI+ R ++ D+ + + QQ + D L PR Sbjct: 62 -VHHVENLTDVNEKIVARVGED------GDSEADVARHYVQQAIDDMRSLNLGRAEVYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-QKMGTRVPEKY 183 + H+P++I L++ +I GHAYE N + FD +S +YG S + +D+ + G + Sbjct: 115 VSEHVPEIIDLVERLIEQGHAYEQNGSVYFDVTSFEDYGKLSNQSVDDIESQGADT--EG 172 Query: 184 HKKNPADFILWK---------------RSTPMEPG------WESPWGRGRPGWHIECSAM 222 K++PADF LWK + P E W+SPWG GRPGWHIECSAM Sbjct: 173 EKRHPADFALWKAGGVDPADIAEHQHPEAAPAEEACQTAQIWDSPWGEGRPGWHIECSAM 232 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 S +L + DIH GG DL+FPHHENE+AQS A ++ AN W+H L E KMS S Sbjct: 233 SMTHLDESIDIHVGGQDLVFPHHENEVAQSEAA-TGKQFANYWLHVRLLETEEEKMSSSL 291 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS- 341 GN+ T+ + +E +FG V+R +L T Y ++ + + EA+ +W + S Sbjct: 292 GNYFTVADAVE--EFG-----PDVLRTFLLSTAYTSRATYSDETIAEAK---ERWDRLSR 341 Query: 342 ------------------TSKGIIDP------AVLSALYNDLNTVSAIQALHKLAR---- 373 T + + D A +AL +D NT A+ AL L Sbjct: 342 GYERAVEACDDVDAHTKVTDETLRDAVEDARSAFEAALNDDFNTREAMTALLDLTAAVNT 401 Query: 374 --ESTKNHDLLPIFNA-------SAHILGIEVCKEHLNKNISIA---IEKLVQERLILLK 421 + +D + A ILG+ + + ++S+A ++ ++ R + Sbjct: 402 HVDGHDEYDYQGLRRAVETFEEFGGGILGLAFGDDD-SGDVSLAGDVVDLVLTVRQQERE 460 Query: 422 MKKFSSADYIRKQLESKGFILEDYKN 447 + AD +R +LE+ G ++D + Sbjct: 461 AGNYERADELRDELEALGVEVQDTDD 486 >gi|217032936|ref|ZP_03438411.1| hypothetical protein HPB128_147g9 [Helicobacter pylori B128] gi|216945346|gb|EEC24018.1| hypothetical protein HPB128_147g9 [Helicobacter pylori B128] Length = 462 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 234/467 (50%), Gaps = 54/467 (11%) Query: 12 ERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRN 71 + K F+ + + +YVCGPTVYD AH+G+AR I FD+L R L E V VRN Sbjct: 5 QNKKVPFEPLIQNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--VVLVRN 62 Query: 72 ITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQ 131 TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 63 FTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLDA 116 Query: 132 MIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNP 188 M+ +I+ ++ AY +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 117 MVGMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ-- 173 Query: 189 ADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIF 242 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+F Sbjct: 174 -DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN + + L +++ Sbjct: 233 PHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFVKDAL-------KNY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AVLSA 354 ++R +L HYR ++F + L ++ L K + + G I+P +L Sbjct: 285 DGEILRNYLLGVHYRSVLNFNEEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKKEILEC 344 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIEVCKEHLNK 403 + +DLN A+ L + + + D +L +LGI Sbjct: 345 MQDDLNISKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPSAYF 404 Query: 404 NISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ IE ++ER K F AD+IR++L + L D Sbjct: 405 QLGVSESEKQEIENKIEERKRAKAQKDFLKADHIREELLKQKIALMD 451 >gi|54302905|ref|YP_132898.1| cysteinyl-tRNA synthetase CysS [Photobacterium profundum SS9] gi|61216516|sp|Q6LHY2|SYC2_PHOPR RecName: Full=Putative cysteinyl-tRNA synthetase 2; AltName: Full=Cysteine--tRNA ligase 2; Short=CysRS 2 gi|46916329|emb|CAG23098.1| hypothetical cysteinyl-tRNA synthetase (cysS) [Photobacterium profundum SS9] Length = 457 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 228/465 (49%), Gaps = 47/465 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +++T+ R++ F +I + + +Y CGPTVYD+AH GN R + DVL R L E Sbjct: 5 ELLLFDTMARELRPFNSIRANKVGLYACGPTVYDYAHAGNLRTYLFVDVLRRTLEINGYE 64 Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 V +V NITD+ +DK+ + AR++ N + I Q F D Sbjct: 65 --VNHVMNITDVGHLVSDADTGEDKMEKGARKQ------NKSAWEIAQFFEQAFFDDLKL 116 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173 L P+ RAT HI + I IQ + G Y+ ++ + F+T + +YG +R Sbjct: 117 LNISTPSVTCRATEHIQEQIKFIQELETKGFTYQTSDGVYFNTDRLADYGKLARLDKQGL 176 Query: 174 KMGTRVPEKYHKKNPADFILWKRS--TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G RV E KK+P DF LWK S P + W+ PWG G PGWHIECSAM+ YLG VF Sbjct: 177 EAGIRV-EMAEKKHPTDFALWKFSGDKPRQMEWQGPWGIGFPGWHIECSAMAEKYLGDVF 235 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIH GG D I HH NEIAQ C A AN W+H FL L+ K+SKS G + ++ L Sbjct: 236 DIHVGGEDHIPVHHTNEIAQ-CQAKNGHVQANYWLHGYFLQLKKEKISKS-GTSLRLDAL 293 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKGIID 348 + + + R L +HYR + FT + L+ A+ L + S G +D Sbjct: 294 V------AKGYEPMAYRYLTLTSHYRSHLSFTWEGLSGAQKALHRLRNKVAFLPSNGNVD 347 Query: 349 PA----VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-----HILGIEVCKE 399 + + + DLN A+ + + N +LLP + ILG+++ K Sbjct: 348 ESYRELFMRHINRDLNMPQALALVWDVL-----NSELLPENKRATALFFDRILGLDIHKI 402 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I I +LV+ R + + F AD IR Q+ G+ + D Sbjct: 403 E-TVEIPEHISRLVELRTQVKRQGNFKKADAIRNQIHDLGYQVND 446 >gi|297242895|ref|ZP_06926833.1| cysteinyl-tRNA synthetase [Gardnerella vaginalis AMD] gi|296889106|gb|EFH27840.1| cysteinyl-tRNA synthetase [Gardnerella vaginalis AMD] Length = 545 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 191/366 (52%), Gaps = 55/366 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +YNT F P + MYVCG TV HIG+ R I FD++ R +LR Y Sbjct: 18 ENLHLYNTASHSTNTFVPKKPGQVGMYVCGATVQSSPHIGHIRAAIAFDIIRRWMLRLGY 77 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A + + I ++F K L LAPT Sbjct: 78 K---VTFVRNVTDIDDKIMKKANESGQNWWERAYIY------EREFTKSYNTLGVLAPTV 128 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNE-------IIFDTSSIPNYGSFSRRKIDEQK 174 +PRAT HI M+ LI+ +I GHAY N+ + FD S +YG + + ++ + Sbjct: 129 EPRATGHITDMVELIERLIERGHAYVINDSDGNPTGNVYFDVPSWEHYGELTHQNQNQNE 188 Query: 175 M------------GTRVPEKYH--------------KKNPADFILWKRSTPM---EPGWE 205 G V + K +P DF LWK + W+ Sbjct: 189 TCADEAAAIADAKGPSVDAAENDIYNPTDPADASPDKHDPRDFALWKAPCDFDQPDARWK 248 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 +P+G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A ++A++W Sbjct: 249 TPFGEGRPGWHIECSAMSHRYLGDDFDIHGGGLDLRFPHHENEMAQTRAAGW--ESADVW 306 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H+ ++ +G KMSKS GN +++ +L A V+R A+ YR ++++ Q Sbjct: 307 MHSAWVTAKGEKMSKSLGNGLSVPVVLANNS-------AWVVRYALGAVQYRAMLEWSDQ 359 Query: 326 RLTEAE 331 L E++ Sbjct: 360 ALVESK 365 >gi|145547719|ref|XP_001459541.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124427366|emb|CAK92144.1| unnamed protein product [Paramecium tetraurelia] Length = 668 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 191/335 (57%), Gaps = 23/335 (6%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+ N+L+ ++ F I+ + Y CGPTVY +H+G+AR + DV+ R LR Y+ Sbjct: 37 LKLANSLKGSELVPFIPINGRQVNFYYCGPTVYSNSHLGHARTYLGIDVIRRTLRDYFHY 96 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 ++ V NITDIDDKII A + D + T + F L P Sbjct: 97 DLLS-VMNITDIDDKIITGA-----NAAKQDFLEF-TKVWEKDFFDAMEALNIELPDVIT 149 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-IPNYGSFSRRK-------IDEQKM 175 R ++++P+++ IQ II +G+AYE+N + F+ I + ++ + + + E + Sbjct: 150 RVSDYVPEIVTFIQKIISNGYAYESNGSVYFEVQKYIADGHTYPKMRPEVNAELLQEGEG 209 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 ++V ++ KK+P DF LWK S P EP W+SPWG GRPGWHIECS M+S LG D+H Sbjct: 210 ESQVNKQSEKKSPYDFALWKASKPEEPKWQSPWGEGRPGWHIECSVMASAILGNPIDLHA 269 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL+FPHH+N +AQ+ E+ N +IH G LN+ RKMSKS NF+TI E+L K Sbjct: 270 GGIDLLFPHHDNSLAQAEACFNCEQWINYFIHLGHLNIADRKMSKSLKNFMTIEEVL--K 327 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++ R +RL + Y P +++ +++ +A Sbjct: 328 RYTPRQ-----VRLNFAIHQYDAPQNYSEEQMEQA 357 >gi|327268009|ref|XP_003218791.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial-like [Anolis carolinensis] Length = 686 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 186/335 (55%), Gaps = 25/335 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+ YN+L + +P + Y CGPTVYD AH+G+A + FD++ R++ +G++ Sbjct: 159 IQTYNSLSKSKEPLVLRNPDVVTWYSCGPTVYDHAHLGHACSYVRFDIIRRIMTRLFGKE 218 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--TQQFVKDTTRLACLAPTHQ 122 V V ITDIDDKII+RA + IS +T + F +D L L PT Sbjct: 219 -VVMVMGITDIDDKIIKRANEM--------GISPLTLARFYEEDFKQDMAALKVLPPTVY 269 Query: 123 PRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVP 180 R T +IPQ+I IQ II H Y + + FD S YG + D Q+ P Sbjct: 270 MRVTENIPQIISFIQKIIASRHGYATSKGNVYFDVRSRGERYGKLANIYPDAQEE----P 325 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K + DF LWK + P E W+SPWG+GRPGWHIECS +SS G DIH GG+DL Sbjct: 326 VDSDKSHVKDFALWKAAKPQEMCWDSPWGKGRPGWHIECSTISSLVFGGHLDIHTGGIDL 385 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + ++ AN ++H+G L+++G KMSKS N+ITI + L K+F Sbjct: 386 AFPHHENEIAQCEVYHQCDQWANYFLHSGHLHVKGSEKMSKSLKNYITIKDFL--KEFSS 443 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 + R+ L + YR I+++ ++EA+ +L Sbjct: 444 DQF-----RMLCLRSRYRAGIEYSDDHMSEAKSIL 473 >gi|67623595|ref|XP_668080.1| cysteinyl-tRNA-synthetase [Cryptosporidium hominis TU502] gi|54659275|gb|EAL37860.1| cysteinyl-tRNA-synthetase [Cryptosporidium hominis] Length = 425 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/338 (37%), Positives = 186/338 (55%), Gaps = 23/338 (6%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY 68 N++ TEF ++ + Y CGPTVYD AH+G+AR + FD++ R+L Y+G V Sbjct: 44 NSMTGGKTEFIPVNGRRVNWYACGPTVYDSAHLGHARNYVTFDIIRRVLEDYFGYD-VYL 102 Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 V NITDIDDKII+R+ ++ ++ + + +F D L P R + Sbjct: 103 VMNITDIDDKIIKRSNEQKRENFLD-----LAREFELEFFDDMKALNVKMPDVITRVSEF 157 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSFSRRKIDE--QKMGTRVPE 181 IP++I I II G AYE+ + FD S YG + + + + + Sbjct: 158 IPEIIDFISTIISRGFAYESEGSVYFDVESFRADEKHVYGRMEPKSVADVNRLLEGEGEL 217 Query: 182 KYH---KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 H KK+P DF LWK++ P EP W+SPWG+GRPGWHIECS M+S+ LG DIH GG+ Sbjct: 218 GEHLKDKKSPLDFALWKKAKPEEPCWDSPWGKGRPGWHIECSVMASNTLGFPIDIHSGGI 277 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHH+NE+AQS + N ++H+G L++ G KMSKS NF TI E+L K+ Sbjct: 278 DLRFPHHDNELAQSEAHYDQAQWVNYFLHSGHLHIHGSKMSKSLKNFTTIQEIL--KENS 335 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 R IR+ L+ + P++++ + + I + K Sbjct: 336 PRH-----IRMLFLLHKWDAPMNYSPETSLQEAIAVDK 368 >gi|149635956|ref|XP_001514971.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 522 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 129/310 (41%), Positives = 177/310 (57%), Gaps = 22/310 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y CGPTVYD AH+G+A + FD++ R+L +G VT V ITDIDDKII+RA + Sbjct: 22 YSCGPTVYDHAHLGHACSYVRFDIIRRILTKIFGINLVT-VMGITDIDDKIIKRANE--- 77 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 +N + + + F +D L L PT R T +IPQ+I I+ II +GHAY Sbjct: 78 ---LNISPIALARLYEEDFKEDMAALKVLPPTVYMRVTENIPQIISFIERIIANGHAYST 134 Query: 149 N-NEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 N + FD + + YG+ D ++ P K++P+DF LWK + P E W S Sbjct: 135 NQGNVYFDLKARGDKYGTLVGMTSDPREE----PADSDKRHPSDFALWKAAKPQEIFWTS 190 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECS +SS G DIH GG+DL FPHHENEIAQ + + N ++ Sbjct: 191 PWGNGRPGWHIECSTISSLIFGSQLDIHSGGIDLAFPHHENEIAQCEVYHQCSQWGNYFL 250 Query: 267 HNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 H+G L+++G+ KMSKS N+ITI + L KKF + RL + YR I+++ Sbjct: 251 HSGHLHVKGKEEKMSKSLKNYITIKDFL--KKFSPDEF-----RLFCMRGSYRSAIEYSE 303 Query: 325 QRLTEAEILL 334 + EA+ LL Sbjct: 304 DSMQEAKHLL 313 >gi|325120070|emb|CBZ55622.1| hypothetical protein NCLIV_060470 [Neospora caninum Liverpool] Length = 671 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 177/324 (54%), Gaps = 34/324 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N++ EF + + Y CGPTVYD +H+G+AR + FDV+ R++ Y Sbjct: 12 LMVNNSMAGGKVEFVPQKGNRVCWYGCGPTVYDASHMGHARTYVTFDVIRRIMSDYLNYD 71 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN--TQQFVKDTTRLACLAPTHQ 122 VT NITDIDDKII+R+ I + +T ++F D L P+ Sbjct: 72 -VTMCMNITDIDDKIIKRS--------IEQGVDFLTLARHWEKEFFNDMAALNVRLPSVV 122 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSF--------SRRK 169 R + +IP+++ LI+ I+ +G+ YE+ + FDT + YG SR Sbjct: 123 TRVSEYIPEVLSLIERIVKNGYGYESQGSVYFDTQTFRKTDKHIYGRMEPSSVSDESRVL 182 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 E ++G EK H P DF LWK++ EP W+SPWG+GRPGWHIECSAM+ L Sbjct: 183 EGEGELGLTSSEKRH---PCDFALWKKAKEGEPSWDSPWGKGRPGWHIECSAMADSILPF 239 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+DL FPHH+NE+AQS A+ + N ++H+G L++ G KMSKS NFITI Sbjct: 240 PLDIHSGGIDLRFPHHDNELAQSEAANDRPQWVNYFLHSGHLHIHGAKMSKSLKNFITIK 299 Query: 290 ELLETKKFGGRSWPAPVIRLAMLM 313 E L +F R IRL LM Sbjct: 300 ECL--SRFTARQ-----IRLLCLM 316 >gi|294791389|ref|ZP_06756546.1| cysteine--tRNA ligase [Scardovia inopinata F0304] gi|294457860|gb|EFG26214.1| cysteine--tRNA ligase [Scardovia inopinata F0304] Length = 589 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/390 (34%), Positives = 193/390 (49%), Gaps = 78/390 (20%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++IY+T I +F I P +YVCG TV H+G+ R + FD++ R L Sbjct: 21 QKVRIYDTARHAIVDFTTITPGKATIYVCGATVQSSPHVGHLRAGVAFDLIRRWLMKLGY 80 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V +VRN+TDIDDKI++++ + + +F K L L PT++ Sbjct: 81 E--VVFVRNVTDIDDKILDKSAAQGQNWWAR------AYYYEAEFTKAYHTLGVLNPTYE 132 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRK------ 169 PRAT HIP MI L+Q +I GHAY + + FD S YG+ + ++ Sbjct: 133 PRATGHIPDMINLVQRLIDRGHAYIIPNPDGSPSGNVYFDVPSWSQYGALTHQESGVSSG 192 Query: 170 -----------------------IDEQKMGTRVPE------------KYHKKNPAD---- 190 D R+ + KY+ +PAD Sbjct: 193 QPDGETESGSLAEADSSEADSSEADSLAEAARIADAIAPSVDAPGNDKYNPTDPADQSER 252 Query: 191 ------FILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 F LWK S P +P W++P+G GRPGWH+ECS MS YLG FDIHGGGLDL Sbjct: 253 KHDPRDFALWKASKPTDPPSARWQTPFGTGRPGWHLECSTMSRKYLGDDFDIHGGGLDLR 312 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE+AQS A A+ W+H+ ++ +G KMSKS GN ++I+ +L Sbjct: 313 FPHHENEMAQSRAAGW--GFAHYWMHSAWVTEKGEKMSKSLGNGLSIDSVLTHYS----P 366 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 W ++R A++ HYR +++ Q L EA+ Sbjct: 367 W---MVRYALVTVHYRSMLEWGDQTLEEAK 393 >gi|289739575|gb|ADD18535.1| cysteinyl-tRNA synthetase [Glossina morsitans morsitans] Length = 537 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 136/393 (34%), Positives = 207/393 (52%), Gaps = 41/393 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 ++ ++IYN + ++ F + + Y CGPTVYD H+G+A + D+L R+LR++ Sbjct: 34 IETDLRIYNCVAKRNVPFILNNQYFVTWYTCGPTVYDSCHLGHASCYVKLDILQRILRHH 93 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V+ + NITDIDDKII A+ E+ D + +F D +L L P Sbjct: 94 FNLNIVSAM-NITDIDDKII--AKSENLGKDWRDVARFYEA----EFWTDLKKLNVLEPN 146 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 + R T+HIP++I I+ II AY + N + D S+ NYG +DEQ ++ Sbjct: 147 VKARVTDHIPKIINYIERIIKKRMAYVGDDNSVYMDVKSVKNYGKLQNISLDEQNAEEQL 206 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 EK KK+P DF LWK + P + SPWG GRP WHIECS ++ G IH GG+D Sbjct: 207 -EKGIKKSPMDFALWK-ARKTGPTFPSPWGDGRPAWHIECSTLAGMIFGDNVHIHAGGID 264 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKF 297 L FPHHENE QSC ++ N W+H G L+++G +KMS S N IT+ ++L KK+ Sbjct: 265 LRFPHHENEECQSCVYHDNKQWVNYWLHTGHLSMKGESQKMSNSLKNTITVKDML--KKY 322 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------PQTSTSKGI 346 G + R+A ++HYR +D++ + + A+ L+K+ T+ G+ Sbjct: 323 SGDDF-----RMACALSHYRNSMDYSDELMEMAKSNLNKFKGFRTDCLAYLSGKKTAVGL 377 Query: 347 IDPAVL-----------SALYNDLNTVSAIQAL 368 D A+ S++ +D NT +I L Sbjct: 378 DDSAIFENLKFAQSHIDSSIKDDFNTARSITTL 410 >gi|323495762|ref|ZP_08100832.1| cysteinyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] gi|323319229|gb|EGA72170.1| cysteinyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] Length = 456 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 220/459 (47%), Gaps = 37/459 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++T+ R+ FQ+I+ + + +Y CGPTVYD+AH GN R + D L R+L Sbjct: 6 LSLFDTMARQQRPFQSIENNTVGLYACGPTVYDYAHAGNLRTYLFVDTLRRVLSL--NGY 63 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V NITD+ +DK+ + AR++ N + I F+ D +L Sbjct: 64 QVNHVMNITDVGHLTSDADTGEDKMEKGARKQ------NKSAWEIAQYFEHAFLADLEQL 117 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 L PT RAT HI + I I + G Y+ + + FDTS + YG +R + Sbjct: 118 NILTPTTICRATEHIQEQIDFIAQLEEKGFTYQTRDGLYFDTSKLAEYGQLARLDKTGLE 177 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFD 232 G RV + KK DF LWK S E W SPWG G PGWHIECSAM+ YLG+ FD Sbjct: 178 AGIRV-DMAEKKLATDFALWKFSGEQERQMEWPSPWGVGFPGWHIECSAMAEKYLGEQFD 236 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG D I HH NEIAQ C A AN W+H FL L K+SKS G + + L+ Sbjct: 237 IHVGGEDHIPIHHTNEIAQ-CQAKNGRIQANYWLHGFFLQLNKEKISKS-GTSLRLEALI 294 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL----SKWPQTSTSKGIID 348 E R + R L HYR + FT + L A+ L +K + + IID Sbjct: 295 E------RGFEPLAYRYLTLTGHYRSHLSFTWESLQGAQTALKRLRNKVTKLADGGQIID 348 Query: 349 P---AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNI 405 + DLN A+ L ++ + D I +++ K + Sbjct: 349 EYQQRFFQLINQDLNMPKALALLWEVLDSGYSSQDKKATALFFDQIFALDINHVEQEK-V 407 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + +L +RL + + K+F+ AD IR+Q+ G+ + D Sbjct: 408 PEDVMQLALQRLAMKQQKRFAEADKIREQINQLGYQVAD 446 >gi|123477243|ref|XP_001321790.1| cysteinyl-tRNA synthetase family protein [Trichomonas vaginalis G3] gi|121904623|gb|EAY09567.1| cysteinyl-tRNA synthetase family protein [Trichomonas vaginalis G3] Length = 660 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 190/365 (52%), Gaps = 27/365 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYN+L I + +R Y CGPTVY +H+G+AR + FD++ R+L Y+ Sbjct: 11 IKIYNSLGANIVPLKREKGLPLRCYTCGPTVYSTSHLGHARTYLSFDMIRRILTDYFN-I 69 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQ-FVKDTTRLACLAPTHQP 123 V + N+TDIDDKII ++ S + ++ F + L P Sbjct: 70 PVQWSMNVTDIDDKIINTFNGMSDDKKAKYGTALGYSADREKAFFAELDTLNIRRPDALL 129 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK-MGTRVPE- 181 R + IP++I I N+ AYE+ + FD + G F +++ Q +GT E Sbjct: 130 RVSEVIPEIIEFISNLEEKSFAYESEGSVYFDVEKFEHDGRFVYAELERQSYLGTAKSEN 189 Query: 182 ----KYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + K+N DF LWK++ P E WE+ WGRGRPGWHIECS MS + G FD+ Sbjct: 190 PEDMQEKKRNRNDFALWKKAKPEEEAAGQYWETKWGRGRPGWHIECSTMSGLFYGPQFDL 249 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANI--WIHNGFLN-LEGRKMSKSNGNFITINE 290 H GG+DL FPHH NEIAQS R EK + W+H G L G KMSKS GNF ++ + Sbjct: 250 HAGGIDLRFPHHSNEIAQSQA--RWEKVPWVRNWMHTGTLRAANGEKMSKSLGNFFSVQD 307 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 G + W V+R+ +HYR P+D + +++A++ LSK +S I+P Sbjct: 308 -------GLQHWSPAVLRMIFCQSHYRNPMDLSEDNISQAQVKLSKITNFLSS---IEPL 357 Query: 351 VLSAL 355 L ++ Sbjct: 358 TLKSI 362 >gi|103485844|ref|YP_615405.1| cysteinyl-tRNA synthetase [Sphingopyxis alaskensis RB2256] gi|98975921|gb|ABF52072.1| cysteinyl-tRNA synthetase [Sphingopyxis alaskensis RB2256] Length = 527 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 164/517 (31%), Positives = 246/517 (47%), Gaps = 92/517 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L R++ F+ + P R+Y CGPTVY++ HIGN R + D L R L + G K Sbjct: 14 LRLFNSLTRRLETFEPVHPGEARVYSCGPTVYNYPHIGNMRAYVFADTLGRTLSFK-GYK 72 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP- 119 +T+V NITD+ DD + E + +I I T+ + D L P Sbjct: 73 -LTHVINITDVGHLTDDADAGEDKLEKAAAEKAQSIWDIARHYTEAYWADVKALNIRGPM 131 Query: 120 -------THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 H AT+++PQMI + I H YE ++ + FDTS++ +YG +R DE Sbjct: 132 KAGKPEAAHWSIATDYVPQMIEFAKAIA-DKHCYELDSGLYFDTSTVADYGRLARHATDE 190 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGK 229 + +R+ K++PADF +W+++ P E W+SPWG+G PGWH+ECS MS LG Sbjct: 191 GE--SRIDPVDGKRHPADFAIWRKTPPGETRQMEWDSPWGKGAPGWHLECSVMSEALLGF 248 Query: 230 VFDIHGGGLDLIFPHHENEIAQ----SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 FDIH GG+D HH NEIAQ SC D A IW+HN FL KMSKS G F Sbjct: 249 PFDIHTGGIDHREIHHPNEIAQNQARSCSTD---SGARIWMHNNFLVERSGKMSKSAGEF 305 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT-----------------VQRLT 328 + + L++ + + RL L HYR ++F+ VQR Sbjct: 306 LRLQLLID------KGYHPLAYRLMCLQAHYRSELEFSWEGLGAALTRLKRLVMAVQRTK 359 Query: 329 EAEILLSKW---PQTSTSKGIIDPAVLS-------------------ALYNDLNTVSAIQ 366 EA LS+W + S G++D + S A+ NDLNT SA Sbjct: 360 EAAT-LSEWKPFKKYLRSPGMVDDYIDSINETDEWFDFTGILGEFDDAISNDLNTASAFP 418 Query: 367 -----ALHKLARESTKN-----HDLLPIFNASAHILGIEVCK-EHLN-----KNISIA-- 408 AL KL E+ + + L + I G+ + + + ++ K +I Sbjct: 419 TSEKLALTKLVEEAVTDPFIQLDNRLRLIATMDQIFGLRLLELDRIDLRIRPKTATITES 478 Query: 409 -IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 IE ++ R K F+++D +R +L + G + D Sbjct: 479 EIEAILTRRKEARAAKDFATSDKLRDELIAAGVEVMD 515 >gi|146162816|ref|XP_001010154.2| cysteinyl-tRNA synthetase family protein [Tetrahymena thermophila] gi|146146260|gb|EAR89909.2| cysteinyl-tRNA synthetase family protein [Tetrahymena thermophila SB210] Length = 716 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 188/351 (53%), Gaps = 30/351 (8%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+ NTL + + EF +R Y CGPTVYD +HIG+AR I D++ R++ Y+G Sbjct: 71 LKVKNTLNPQNLVEFVPHKGKQVRFYNCGPTVYDSSHIGHARTYISADIIKRIMVKYFGY 130 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V + NITDIDDKII+++ + + + K + +D L P Sbjct: 131 D-VFHCMNITDIDDKIIKKSNES------GEEFTAFARKWEMDYWQDMETLNVDKPDVIV 183 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----------SSIPNYGSFSRRKIDE 172 R + ++P++I I+ II +G+AY AN + F+ S + +K+DE Sbjct: 184 RVSEYVPEIISYIEKIIENGYAYVANGSVYFNVDKFHESPTHCYSKLEPQSVNDAQKLDE 243 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + ++ K++P DF LWK S P EP W+SPWG+GRPGWHIECS M+S LG D Sbjct: 244 GEGALGKKDEKEKRSPRDFALWKASKPGEPFWDSPWGQGRPGWHIECSTMASEILGYPVD 303 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI----HNGFLNLEGRKMSKSNGNFITI 288 IH GG DL FPHH+NE+AQS + N W+ H G L+++G KMSKS NFITI Sbjct: 304 IHMGGEDLKFPHHDNELAQSEAFYNKQDCQNQWVNYFMHTGHLHIDGLKMSKSLKNFITI 363 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 L + + R V+RL + Y +D+T + EA+ K+ + Sbjct: 364 KHL--SSQHSQR-----VLRLLFMKQTYDSTMDYTTDSIHEAKTKDKKYSE 407 >gi|71026881|ref|XP_763084.1| cysteinyl-tRNA synthetase [Theileria parva strain Muguga] gi|68350037|gb|EAN30801.1| cysteinyl-tRNA synthetase, putative [Theileria parva] Length = 659 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 125/318 (39%), Positives = 178/318 (55%), Gaps = 25/318 (7%) Query: 16 TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI 75 EF + ++ Y CGPTVYD AH+G+AR I D + +L Y + +V NITD+ Sbjct: 80 VEFVPEEGRKVKWYTCGPTVYDVAHMGHARTYIACDTIRSILENYLNYD-LFFVENITDV 138 Query: 76 DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 DDKII+RA E S S ++S ++F D L P R ++++ +++ Sbjct: 139 DDKIIQRALNEGKSY------SEVSSHWEREFWNDMLSLGVSLPDCITRVSDYMVEIVDF 192 Query: 136 IQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM----------GTRVPEKYHK 185 I+ I+ +G+AY ++ + FD + + G K++ GT +K Sbjct: 193 IKKILDNGYAYVSDGSVYFDIEAFRSSGKHVYAKLEPTSFNDLNRILDAEGTLGEVSVNK 252 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFPH 244 K+ +DF LWK+S EP W+SPWG+GRPGWHIECSAMS+ GK VFDIH GG+DL FPH Sbjct: 253 KSKSDFALWKKSKVNEPSWDSPWGKGRPGWHIECSAMSTCIFGKEVFDIHSGGVDLRFPH 312 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NEIAQS K AN ++H G L++ G KMSKS NFI+I E+L K+ R Sbjct: 313 HDNEIAQSEAYFDSNKWANYFLHFGHLHIHGLKMSKSLKNFISIKEML--TKYNKRQ--- 367 Query: 305 PVIRLAMLMTHYREPIDF 322 IR+ L + Y ++F Sbjct: 368 --IRILFLNSRYDSTLNF 383 >gi|298711628|emb|CBJ32684.1| Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 663 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/418 (33%), Positives = 209/418 (50%), Gaps = 64/418 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R T F D + + Y+CGPTVY +H+G+AR + FD+L R++ ++G Sbjct: 40 LKVFNSLTRTKTRFVPKDSNRVLWYMCGPTVYAPSHMGHARTYLHFDILRRVMTDFFGYD 99 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V+ NITDIDDKII RA + + + + + +++D L APT R Sbjct: 100 -VSLCMNITDIDDKIITRANEGGQNY------RELAAHFEEDYMQDMALLGVRAPTVVTR 152 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--VPE- 181 + IP+++ IQ II +G+AYE+N + F+ S + K+ + +G + E Sbjct: 153 VSEFIPEVVEYIQGIIDNGYAYESNGSVYFNVQSFEGKKGHAYAKLLPEGVGNGELMAEG 212 Query: 182 -------KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL----GKV 230 K++ DF LWKRS EP W SPWG GRPGWHIECS M+S Sbjct: 213 EGALSLGAGDKRSSGDFALWKRSREGEPSWPSPWGDGRPGWHIECSVMASATFEGMGDGT 272 Query: 231 FDIHGGGLDLIFPHHENEIAQS-----CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 DIH GG+DL FPHH+NE+AQ+ CC + N ++H G L+++G KMSKS NF Sbjct: 273 MDIHSGGVDLKFPHHDNEMAQAEAKYDCC-----QWVNYFLHTGHLHIKGFKMSKSLKNF 327 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF----------------------- 322 ITI + L+ IRL L+ Y P+D+ Sbjct: 328 ITIKQALQENS-------PRQIRLLFLLHKYNTPMDYGDDAMSGALAAERTFSEFFHNVK 380 Query: 323 -TVQRLTEAEILLSKWPQTSTSKGIIDP--AVLSALYNDLNTVSAIQALHKLARESTK 377 ++R T + +K P+ + + D V L +D++T A+ AL +L + K Sbjct: 381 AALRRTTARDPARTKEPELALMSSLSDAKKEVKKCLCDDVDTPGAMGALQELVKNVNK 438 >gi|111153388|emb|CAJ65144.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysS1) [Frankia alni ACN14a] Length = 458 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/274 (43%), Positives = 156/274 (56%), Gaps = 21/274 (7%) Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VT V+N+TDIDDKII A ++ S+ + ++ T+ F + L PT Q Sbjct: 4 EHEVTLVQNVTDIDDKIIVNADRDGTSV------WELATRQTRAFDDAYRTIGILPPTIQ 57 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HIP+MI LI +I GHAY + F S P YG+ S ++ D M + Sbjct: 58 PRATGHIPEMIALISALIAGGHAYAGAGSVWFRVGSFPGYGALSHQRPD--SMLPSAESE 115 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + P EP W SPWG GRPGWH+ECSAM+ YLG VFDIHGGGLDL+F Sbjct: 116 PGKADPRDFALWKAARPGEPFWSSPWGDGRPGWHLECSAMAGKYLGPVFDIHGGGLDLVF 175 Query: 243 PHHENEIAQSCC------ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 PHHENE AQ+ C E+ A W+H G L G KMSKS GN + + + LE + Sbjct: 176 PHHENERAQTVCAAGGAAGAGAEEMARYWMHVGLLTTGGTKMSKSLGNSVLVADALEAVR 235 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 V+R +L HYR +++T + L E+ Sbjct: 236 -------PQVLRYHLLSAHYRSTLEYTPEALGES 262 >gi|269126521|ref|YP_003299891.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Thermomonospora curvata DSM 43183] gi|310947225|sp|D1A2Q5|MSHC_THECD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|268311479|gb|ACY97853.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Thermomonospora curvata DSM 43183] Length = 414 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 172/317 (54%), Gaps = 22/317 (6%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 RMYVCG T YD H+G+A + FD++ R+ R G V YV+N+TD+DD ++ERA Q Sbjct: 44 RMYVCGITPYDATHLGHAATYLAFDLVNRVWRD--GGHKVCYVQNVTDVDDPLLERAEQ- 100 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + F D T L L P H A IP ++ +I+ + G Y Sbjct: 101 -----TGQDWRELADREIALFRDDMTALRILPPDHYVGAVEAIPLIVEMIERLRSRGAVY 155 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDE------QKMGTRVPEKYHKKNPADFILWKRSTPM 200 E N ++ F S+ P++G S ++ ++ G P++ KK+P D +LW+ P Sbjct: 156 EVNGDLYFPISADPDFGRVSGLTTEQMLPLFAERGGD--PQRRGKKDPLDALLWRAQRPG 213 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 EP WESP+G GRPGWH+ECSA+S H+LG FD+ GGG DL FPHHE + + A Sbjct: 214 EPSWESPFGPGRPGWHVECSAISIHHLGMAFDVEGGGSDLAFPHHEMSASHAQVATGRHP 273 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A ++H G + L+G+KMSKS GN + ++ L + G +RLA+L HYR Sbjct: 274 HAKAYVHTGMVGLDGQKMSKSLGNLVFVSRL---RADGADPM---AVRLALLAHHYRSDW 327 Query: 321 DFTVQRLTEAEILLSKW 337 ++T + L A L +W Sbjct: 328 EWTGEDLPRATARLERW 344 >gi|148553156|ref|YP_001260738.1| cysteinyl-tRNA synthetase [Sphingomonas wittichii RW1] gi|148498346|gb|ABQ66600.1| cysteinyl-tRNA synthetase [Sphingomonas wittichii RW1] Length = 510 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 177/346 (51%), Gaps = 30/346 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++++L R F IDP+ +R+Y CGPTVY+FAH+GN R + D L R L + Sbjct: 11 LMLFDSLTRSTRAFAPIDPAMVRLYSCGPTVYNFAHLGNLRAYVFTDTLRRTLNWK--GW 68 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V +V NITD+ DDK+ E + I I + T F D L Sbjct: 69 PVNHVINITDVGHLTSDADEGDDKM------EAAAKKAARTIWEIAAFYTDAFKADLRDL 122 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 +APT AT+HI MI + I G +YE + + FDTS +P+YG + + DE Sbjct: 123 NIIAPTLWSVATDHIQDMIAFARTIEAAGASYELDGGLYFDTSKVPDYGRLAGARGDETV 182 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R+ E K+N ADF LW+RS E W SPWG G PGWH+ECS MS YLG F Sbjct: 183 --GRIAEVEGKRNAADFALWRRSATGEQRQMEWMSPWGPGAPGWHLECSVMSMKYLGSQF 240 Query: 232 DIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D HH NEIAQ+ AN W+HN FL G KMSKS G F T+ Sbjct: 241 DIHTGGIDHREIHHCNEIAQNQAFTGTAASGANFWMHNNFLVDRGGKMSKSKGGFATLAG 300 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 +++ + RL L HYR ++F+ + L A L++ Sbjct: 301 VID------KGVHPLAYRLLCLSAHYRSELEFSPEALASALTRLTR 340 >gi|260753260|ref|YP_003226153.1| cysteinyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552623|gb|ACV75569.1| cysteinyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 516 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 164/505 (32%), Positives = 238/505 (47%), Gaps = 75/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +N+L +KI F IDP +R+Y CGPTVY+FAH+GN R + D L R+L + Sbjct: 8 VLFFNSLSKKIENFTPIDPERVRLYSCGPTVYNFAHLGNLRAYVFTDSLRRMLNWK--GY 65 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V +V NITD+ D + E + I + T+ F D L PT Sbjct: 66 PVNHVINITDVGHLTSDSDTGDDKMEAAAHKAQKTIWDVARFYTEAFWSDLKNLNIFNPT 125 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT+HI MI + I G Y+ ++ + FDTS + YG + + E + R+ Sbjct: 126 IWSIATDHIEDMIAFARKIEEAGFTYQLDSGLYFDTSRLKEYGLLAGHR--EAEGVGRIE 183 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+PADF LW+RS+P E W SPWG G PGWH+ECS MS YLG+ FDIH GG Sbjct: 184 TVAGKKHPADFALWRRSSPDEKRQMEWISPWGPGAPGWHLECSVMSMKYLGEQFDIHTGG 243 Query: 238 LDLIFPHHENEIA--QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 +D HH NEIA Q+ D+ + AN W+HN FL KMSKS G+F+T++ L+E Sbjct: 244 IDHREIHHCNEIAQNQAFTGDQQKTGANFWLHNNFLVDRSGKMSKSKGSFLTLSTLIEAG 303 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA--------------- 330 R+ L HYR ++F+ ++RL A Sbjct: 304 IH------PLAYRVLCLSAHYRSELEFSPDNILAALTRLKRLVIAVGQLKKKVQKKVVAD 357 Query: 331 ----------EILLSKWPQTSTSKGIIDP-------AVL----SALYNDLNTVSAIQALH 369 E SK +G+I+ A+L A+ NDL A+ L Sbjct: 358 GEPDWLRAFDERSFSKGAPLDYQRGLIEAPLKKEALAILERFDQAVSNDLMLPQALPLLE 417 Query: 370 K-LARESTKNHDLLPIFNASAHILGIEVC---KEHLN---KNISIA---IEKLVQERLIL 419 + L + + + L + + ILG+ + + LN KN S+ + L++ER + Sbjct: 418 ETLGNKKLQPEEQLRLIASMDMILGLNLLHLDRASLNIRPKNASLQENNVLALLEERQLK 477 Query: 420 LKMKKFSSADYIRKQLESKGFILED 444 K K F+++D IR +L G + D Sbjct: 478 RKEKDFAASDAIRDRLSEAGIDVLD 502 >gi|56551082|ref|YP_161921.1| cysteinyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|61216128|sp|Q5NR44|SYC_ZYMMO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56542656|gb|AAV88810.1| cysteinyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 516 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 164/505 (32%), Positives = 238/505 (47%), Gaps = 75/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +N+L +KI F IDP +R+Y CGPTVY+FAH+GN R + D L R+L + Sbjct: 8 VLFFNSLSKKIENFTPIDPERVRLYSCGPTVYNFAHLGNLRAYVFTDSLRRMLNWK--GY 65 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V +V NITD+ D + E + I + T+ F D L PT Sbjct: 66 PVNHVINITDVGHLTSDSDTGDDKMEAAAHKAQKTIWDVARFYTEAFWSDLKNLNIFNPT 125 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT+HI MI + I G Y+ ++ + FDTS + YG + + E + R+ Sbjct: 126 IWSIATDHIEDMIAFARKIEEAGFTYQLDSGLYFDTSRLKEYGLLAGHR--EAEGVGRIE 183 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+PADF LW+RS+P E W SPWG G PGWH+ECS MS YLG+ FDIH GG Sbjct: 184 TVAGKKHPADFALWRRSSPDEKRQMEWISPWGPGAPGWHLECSVMSMKYLGEQFDIHTGG 243 Query: 238 LDLIFPHHENEIA--QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 +D HH NEIA Q+ D+ + AN W+HN FL KMSKS G+F+T++ L+E Sbjct: 244 IDHREIHHCNEIAQNQAFTGDQQKTGANFWLHNNFLVDRSGKMSKSKGSFLTLSTLIEAG 303 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA--------------- 330 R+ L HYR ++F+ ++RL A Sbjct: 304 IH------PLAYRVLCLSAHYRSELEFSPDNILAALTRLKRLVIAVGQLKKKVQKKVVAD 357 Query: 331 ----------EILLSKWPQTSTSKGIIDP-------AVL----SALYNDLNTVSAIQALH 369 E SK +G+I+ A+L A+ NDL A+ L Sbjct: 358 GEPDWLRAFDERSFSKGAPLDYQRGLIEAPLKKEALAILERFDQAVSNDLMLPQALPLLE 417 Query: 370 K-LARESTKNHDLLPIFNASAHILGIEVC---KEHLN---KNISIA---IEKLVQERLIL 419 + L + + + L + + ILG+ + + LN KN S+ + L++ER + Sbjct: 418 ETLGNKKLQPEEQLRLIASMDMILGLNLLHLDRASLNIRPKNASLQENNVLALLEERQLK 477 Query: 420 LKMKKFSSADYIRKQLESKGFILED 444 K K F+++D IR +L G + D Sbjct: 478 RKEKDFAASDAIRNRLSEAGIDVLD 502 >gi|241761347|ref|ZP_04759435.1| cysteinyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374254|gb|EER63751.1| cysteinyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 516 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 164/505 (32%), Positives = 238/505 (47%), Gaps = 75/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +N+L +KI F IDP +R+Y CGPTVY+FAH+GN R + D L R+L + Sbjct: 8 VLFFNSLSKKIENFTPIDPERVRLYSCGPTVYNFAHLGNLRAYVFTDSLRRMLNW--KGY 65 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V +V NITD+ D + E + I + T+ F D L PT Sbjct: 66 PVNHVINITDVGHLTSDSDTGDDKMEAAAHKAQKTIWDVARFYTEAFWSDLKNLNIFNPT 125 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT+HI MI + I G Y+ ++ + FDTS + YG + + E + R+ Sbjct: 126 IWSIATDHIEDMIAFARKIEEAGFTYQLDSGLYFDTSRLKEYGLLAGHR--EAEGVGRIE 183 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+PADF LW+RS+P E W SPWG G PGWH+ECS MS YLG+ FDIH GG Sbjct: 184 TVAGKKHPADFALWRRSSPDEKRQMEWISPWGPGAPGWHLECSVMSMKYLGEQFDIHTGG 243 Query: 238 LDLIFPHHENEIA--QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 +D HH NEIA Q+ D+ + AN W+HN FL KMSKS G+F+T++ L+E Sbjct: 244 IDHREIHHCNEIAQNQAFTGDQQKTGANFWLHNNFLVDRSGKMSKSKGSFLTLSTLIEAG 303 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEA--------------- 330 R+ L HYR ++F+ ++RL A Sbjct: 304 IH------PLAYRVLCLSAHYRSELEFSPDNILAALTRLKRLVIAVGQLKKKVQKKVVAD 357 Query: 331 ----------EILLSKWPQTSTSKGIIDP-------AVLS----ALYNDLNTVSAIQALH 369 E SK +G+I+ A+L A+ NDL A+ L Sbjct: 358 GEPDWLRAFDERSFSKGAPLDYQRGLIEAPLKKEALAILELFDLAVSNDLMLPQALPLLE 417 Query: 370 K-LARESTKNHDLLPIFNASAHILGIEVC---KEHLN---KNISIA---IEKLVQERLIL 419 + L + + + L + + ILG+ + + LN KN S+ + L++ER + Sbjct: 418 ETLGNKKLQPEEQLRLIASMDMILGLNLLHLDRASLNIRPKNASLQENNVLDLLEERQLK 477 Query: 420 LKMKKFSSADYIRKQLESKGFILED 444 K K F+++D IR +L G + D Sbjct: 478 RKEKDFAASDAIRDRLSEAGIDVLD 502 >gi|300711054|ref|YP_003736868.1| cysteinyl-tRNA synthetase [Halalkalicoccus jeotgali B3] gi|299124737|gb|ADJ15076.1| cysteinyl-tRNA synthetase [Halalkalicoccus jeotgali B3] Length = 495 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 149/494 (30%), Positives = 233/494 (47%), Gaps = 69/494 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + NTL + EF+ + +YVCG TV D AH+G+AR + DV+ R L + Sbjct: 2 LSVTNTLSDEREEFRPT-GDEVLVYVCGLTVSDDAHLGHARVWVHADVMCRWLSHEG--H 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+++KI R + + + + + + ++D L T PR Sbjct: 59 AVRHVENFTDVNEKIAARIDEG----DLGGSELGVARRFIEGTLEDMRGLNLQRATVYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + H+P+++ LI+ ++ GHAYE++ + FD ++ YG S +++ + + E+ Sbjct: 115 VSEHVPEILALIERLLESGHAYESDGSVYFDVTTFEEYGKLSNQRVTDLEAQGDPTERSE 174 Query: 185 KKNPADFILWKRSTPMEPG-----------------WESPWGRGRPGWHIECSAMSSHYL 227 K+NPADF LWK E W+SPWG GRPGWHIECSAM+ +L Sbjct: 175 KRNPADFALWKAGGVSESAIRDHEKVDHAHPPDGETWDSPWGEGRPGWHIECSAMAMTHL 234 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 + DIH GG DL+FPHHENEIAQS A + AN W+H G L +G KMS S GNF T Sbjct: 235 DETIDIHVGGHDLVFPHHENEIAQSEAATG-KPFANYWLHTGLLETDGEKMSSSLGNFFT 293 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE-------------ILL 334 ++ L+ +FG V+R L T Y F+ + EA+ I Sbjct: 294 VSAALD--EFG-----PDVLRSFYLATEYGSNQTFSEDAMAEAKERYERLERAYERAIEA 346 Query: 335 SKWPQTSTS------KGIIDPA---VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 + P T + I+ A + A+ +D A+ AL +LA ++ D + Sbjct: 347 ADGPDARTKIEDHELRAAIEEARGEFVRAMNDDFGVREAMSALLELAGALNRHLDAREEY 406 Query: 386 NASAHILGIEVCK------------EHLNKNISIA---IEKLVQERLILLKMKKFSSADY 430 + A IE + + +A +E +++ R + + AD Sbjct: 407 DYRALRRAIETIEGFGGEIFGFSFGSGAGDGVDLAGDLVELVLEVREAEREAGNYERADA 466 Query: 431 IRKQLESKGFILED 444 +R+ LE+ G +ED Sbjct: 467 LREDLEALGVTVED 480 >gi|219114520|ref|XP_002176430.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402676|gb|EEC42666.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 568 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/346 (39%), Positives = 190/346 (54%), Gaps = 33/346 (9%) Query: 5 IKIYNTLERKITEFQAI--DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--Y 60 + ++N+ R F+ + D + + MY CGPTVYDFAH+GN R + +DVL R+LRY Y Sbjct: 71 LSLFNSKTRAKEPFRPVRADTNVVSMYTCGPTVYDFAHVGNFRAFLTYDVLKRVLRYLGY 130 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VT+V N+TD+DDKII+RA ++ D + +T + Q F D L Sbjct: 131 H----VTHVCNLTDVDDKIIQRANEQKI-----DHVQTLTRRYEQHFRDDLQALNIQPAC 181 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMG-TR 178 PRAT HI M+ LI+ + AYE + F T + P YG+ +++ Q+M T Sbjct: 182 QYPRATEHIDDMMDLIRVLRDKELAYETPDGSWYFRTQAQPRYGT-QLVQLNYQEMAQTE 240 Query: 179 VPEKYHKKNPADFILWKRSTP----MEPGWES-PWGRGRPGWHIECSAMSSHYLG-KVFD 232 E K++ ADF LWK M+ WES GRPGWH+ECSAM+ H+ G D Sbjct: 241 RGESDDKEHFADFCLWKAFKTGVDRMDAAWESNDIALGRPGWHLECSAMARHFFGDDTID 300 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 +HGGG+DL FPHHENEIAQS A N W HNGF+N++ KMSKS GNF+T+ Sbjct: 301 LHGGGIDLKFPHHENEIAQSEGATG-NVFCNCWFHNGFVNMDNEKMSKSLGNFLTLR--- 356 Query: 293 ETKKFGGRSWPAPV--IRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 G P V R + + YR+ + FT Q +T A +++ Sbjct: 357 -----GACPTPDDVRAYRYLAVSSQYRQALAFTPQAMTAARNAIAR 397 >gi|296269905|ref|YP_003652537.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Thermobispora bispora DSM 43833] gi|310947224|sp|D6Y1N8|MSHC_THEBD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|296092692|gb|ADG88644.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Thermobispora bispora DSM 43833] Length = 403 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 191/373 (51%), Gaps = 32/373 (8%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T R++ E +PS RMYVCG T YD H+G+A + FD++ R R Sbjct: 19 LRLYDTATREVRE---TEPSGKARMYVCGITPYDATHLGHANTYLAFDLVNRAWRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y +N TD+DD ++ERA+ I + + + F D L L P Sbjct: 74 HDVHYTQNTTDVDDPLLERAQA------IGVDWRELADREIELFRTDMEALRILPPRDYV 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS------RRKIDEQKMGT 177 T I + +I ++ G Y +++ F ++ P +G+ S R++ ++ G Sbjct: 128 AVTEVIDDIAEVIVRLMERGATYRIGDDVYFSVAAAPKFGAISGYDEETMRRLFAERGGD 187 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P + K+NP D++LW+ P EP WESP+GRGRPGWH+EC+A++ +LG FD+ GGG Sbjct: 188 --PGRAGKRNPLDWLLWRGERPGEPSWESPFGRGRPGWHVECTAIALRHLGPGFDVSGGG 245 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHE + A A ++H G + EG KMSKS GN + ++EL Sbjct: 246 SDLIFPHHEMGACEGHVATGEWPFARAYVHAGMVAYEGEKMSKSRGNLVFVSELRHEAD- 304 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA--- 354 IRLA+L HYR ++T RLTEAE L++W D A L A Sbjct: 305 ------PMAIRLALLARHYRSDWEWTPDRLTEAEARLARWRAAVARPAGPDGAALLARVR 358 Query: 355 --LYNDLNTVSAI 365 + +DL+ A+ Sbjct: 359 ERIADDLDAPGAL 371 >gi|13375695|ref|NP_078813.1| probable cysteinyl-tRNA synthetase, mitochondrial precursor [Homo sapiens] gi|74761587|sp|Q9HA77|SYCM_HUMAN RecName: Full=Probable cysteinyl-tRNA synthetase, mitochondrial; AltName: Full=Cysteine--tRNA ligase; Short=CysRS; Flags: Precursor gi|10433519|dbj|BAB13978.1| unnamed protein product [Homo sapiens] gi|55957407|emb|CAI17004.1| novel protein [Homo sapiens] gi|55957784|emb|CAI16971.1| novel protein [Homo sapiens] gi|119629531|gb|EAX09126.1| hypothetical protein FLJ12118 [Homo sapiens] Length = 564 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 22/323 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 52 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFGCS 111 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V ITD+DDKII+RA + +N + + + S + F +D L L PT R Sbjct: 112 IVM-VMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYLR 164 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 T +IPQ+I I+ II G+AY A + FD S + YG + +G P Sbjct: 165 VTENIPQIISFIEGIIARGNAYSTAKGNVYFDLKSRGDKYGKLV--GVVPGPVGE--PAD 220 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL F Sbjct: 221 SDKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLAF 280 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQ + E+ N ++H+G L+ +G+ KMSKS N+ITI + L+T Sbjct: 281 PHHENEIAQCEVFHQCEQWGNYFLHSGHLHAKGKEEKMSKSLKNYITIKDFLKT------ 334 Query: 301 SWPAPVIRLAMLMTHYREPIDFT 323 + V R L + YR ID++ Sbjct: 335 -FSPDVFRFFCLRSSYRSAIDYS 356 >gi|283782829|ref|YP_003373583.1| cysteine--tRNA ligase [Gardnerella vaginalis 409-05] gi|283441414|gb|ADB13880.1| cysteine--tRNA ligase [Gardnerella vaginalis 409-05] Length = 588 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 164/538 (30%), Positives = 241/538 (44%), Gaps = 116/538 (21%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +YNT F + MYVCG TV HIG+ R I FD++ R +LR Y Sbjct: 61 ENLHLYNTASHSTNTFVPKKHGQVGMYVCGATVQSSPHIGHIRAAIAFDIIRRWMLRLGY 120 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A + + I ++F K L LAPT Sbjct: 121 K---VTFVRNVTDIDDKIMKKANESGQNWWERAYIY------EREFTKSYNTLGVLAPTV 171 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDEQK 174 +PRAT HI M+ LI+ +I GHAY + FD S +YG + + ++ + Sbjct: 172 EPRATGHITDMVELIERLIERGHAYVIKDNDGNPTGNVYFDVPSWEHYGELTHQNQNQNE 231 Query: 175 M------------GTRVPEKYH--------------KKNPADFILWKRSTPM---EPGWE 205 G V + K +P DF LWK + W+ Sbjct: 232 TCADEAAAIADAKGPSVDAAENDIYNPTDPADASPDKHDPRDFALWKAPCDFDQPDARWK 291 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 +P+G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A ++AN+W Sbjct: 292 TPFGEGRPGWHIECSAMSHRYLGNDFDIHGGGLDLRFPHHENEMAQTRAAGW--ESANVW 349 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H+ ++ +G KMSKS GN +++ +L A V+R A+ YR ++++ Q Sbjct: 350 MHSAWVTAKGEKMSKSLGNGLSVPVVLANNS-------AWVVRYALGAVQYRAMLEWSDQ 402 Query: 326 RLTE--------------AEILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQA 367 L E A+ LL K P + + + A+ +D+N AI Sbjct: 403 ALVESKSAYDRIMNFLERADRLLDKKPTCEEVRSVNADELPEDFTRAMNDDINVSGAIAE 462 Query: 368 LHKLAR------------------ESTKNHDLLPIFNASAHI--LGIE------------ 395 + R ES + L + A + LG++ Sbjct: 463 IFTTIRQGNTLIDDCSKDSSQAQSESIQKLIYLAVLQVRAMLDTLGLDPYAKTWASNNNQ 522 Query: 396 ---------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 KEH + I ++ ++ R K K F++AD IR L + G ++ D Sbjct: 523 SPAEGSNGKESKEHSALDSLITLQ--LKARADARKAKDFATADAIRDALNNAGIVIVD 578 >gi|298253308|ref|ZP_06977100.1| cysteinyl-tRNA synthetase [Gardnerella vaginalis 5-1] gi|297532703|gb|EFH71589.1| cysteinyl-tRNA synthetase [Gardnerella vaginalis 5-1] Length = 588 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 163/536 (30%), Positives = 241/536 (44%), Gaps = 112/536 (20%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYY 61 + + +YNT F + MYVCG TV HIG+ R I FD++ R +LR Y Sbjct: 61 ENLHLYNTASHSTNTFVPKKHGQVGMYVCGATVQSSPHIGHIRAAIAFDIIRRWMLRLGY 120 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VT+VRN+TDIDDKI+++A + + I ++F K L LAPT Sbjct: 121 K---VTFVRNVTDIDDKIMKKANESGQNWWERAYIY------EREFTKSYNTLGVLAPTV 171 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSRRKIDEQK 174 +PRAT HI M+ LI+ +I GHAY + FD S +YG + + ++ + Sbjct: 172 EPRATGHITDMVELIERLIERGHAYVIKDNDGNPTGNVYFDVPSWEHYGELTHQNQNQNE 231 Query: 175 M------------GTRVPEKYH--------------KKNPADFILWKRSTPM---EPGWE 205 G V + K +P DF LWK + W+ Sbjct: 232 TCADEAAAIADAKGPSVDAAENDIYNPTDPADASPDKHDPRDFALWKAPCDFDQPDARWK 291 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 +P+G GRPGWHIECSAMS YLG FDIHGGGLDL FPHHENE+AQ+ A ++AN+W Sbjct: 292 TPFGEGRPGWHIECSAMSHRYLGNDFDIHGGGLDLRFPHHENEMAQTRAAGW--ESANVW 349 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H+ ++ +G KMSKS GN +++ +L A V+R A+ YR ++++ Q Sbjct: 350 MHSAWVTAKGEKMSKSLGNGLSVPVVLANNS-------AWVVRYALGAVQYRAMLEWSDQ 402 Query: 326 RLTE--------------AEILLSKWPQTSTSKGI----IDPAVLSALYNDLNTVSAIQA 367 L E A+ LL K P + + + A+ +D+N AI Sbjct: 403 ALVESKSAYDRIMNFLERADRLLDKKPTCEEVRSVNADELPEDFTRAMNDDINVSGAIAE 462 Query: 368 LHKLAR------------------ESTKNHDLLPIFNASAHI--LGIEVCKEHLNKNIS- 406 + R ES + L + A + LG++ + N + Sbjct: 463 IFTTIRQGNTLIDDCSKDSSQAQSESVQKLIYLAVLQVRAMLDTLGLDPYAQTWASNDNQ 522 Query: 407 --------------IAIEKLV----QERLILLKMKKFSSADYIRKQLESKGFILED 444 A++ L+ + R K K F++AD IR L + G ++ D Sbjct: 523 SPAEGSNGKENKEHSALDSLITLQLKARADARKAKDFATADAIRDALNNAGIVIVD 578 >gi|13938199|gb|AAH07220.1| Cysteinyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens] Length = 564 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 22/323 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 52 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFGCS 111 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V ITD+DDKII+RA + +N + + + S + F +D L L PT R Sbjct: 112 IVM-VMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYLR 164 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 T +IPQ+I I+ II G+AY A + FD S + YG + +G P Sbjct: 165 VTENIPQIISFIEGIIARGNAYSTAKGNVYFDLKSRGDKYGKLV--GVVPGPVGE--PAD 220 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL F Sbjct: 221 SDKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLAF 280 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQ + E+ N ++H+G L+ +G+ KMSKS N+ITI + L+T Sbjct: 281 PHHENEIAQCEVFHQCEQWGNYFLHSGHLHAKGKEEKMSKSLKNYITIKDFLKT------ 334 Query: 301 SWPAPVIRLAMLMTHYREPIDFT 323 + V R L + YR ID++ Sbjct: 335 -FSPDVFRFFCLRSSYRSAIDYS 356 >gi|311899990|dbj|BAJ32398.1| putative ATP-dependent L-cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Kitasatospora setae KM-6054] Length = 409 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 181/339 (53%), Gaps = 23/339 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IY+T + E P+ R+YVCG T YD H+G+A FD++ R+ + Sbjct: 19 LRIYDTATSSVREVVPTGPTA-RLYVCGITPYDATHLGHAATYTTFDLVQRV--WKDAGH 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD ++ERA + +++ + T F +D T L L P H Sbjct: 76 DVLYVQNVTDVDDPLLERA------VATGQDWTVLAERETALFREDMTALRMLPPAHYIG 129 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE------QKMGTR 178 A IP ++ L+Q ++ G AYE + ++ F S P +G S ++ ++ G Sbjct: 130 AVESIPWIVPLVQRLLASGAAYEVDGDVYFSVESDPRFGEVSGLTREQMLPVFAERGGD- 188 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE+ KKNP D +LW + P EP WE+ G GRPGWHIEC A++ +LG FDI GGG Sbjct: 189 -PERPGKKNPLDALLWLAARPGEPAWETELGHGRPGWHIECVAIALQFLGMDFDIQGGGS 247 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHE A + A A ++H G + L+G KMSKS GN + ++ L ++ G Sbjct: 248 DLSFPHHEMGAAHAQVALGEHPYARAYVHAGMVGLDGHKMSKSRGNLVFVSAL---RRDG 304 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 PA IRLA+L HYR ++T L A L+ W Sbjct: 305 VD--PA-AIRLALLAHHYRSDWEWTPADLDTALTRLAAW 340 >gi|145499052|ref|XP_001435512.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402645|emb|CAK68115.1| unnamed protein product [Paramecium tetraurelia] Length = 679 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 191/335 (57%), Gaps = 23/335 (6%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+ N+L+ ++ F I+ + Y CGPTVY +H+G+AR + DV+ R LR Y+ Sbjct: 37 LKLANSLKGSELVPFIPINGRQVNFYYCGPTVYSNSHLGHARTYLGIDVIRRTLRDYFNY 96 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 ++ V NITDIDDKII A+ + D + T + F L P Sbjct: 97 DLLS-VMNITDIDDKIINGAK-----LAKQDFLEF-TRVWEKDFFSAMEALNIELPDVIT 149 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG-SFSRRK-------IDEQKM 175 R ++++P+++ I+ II +G+AY++N + FD G ++ + + + E + Sbjct: 150 RVSDYVPEIVTFIEKIIANGYAYDSNGSVYFDVQKYLADGHTYPKMRPEMNVDLLQEGEG 209 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 ++V ++ K++P DF LWK S P EP W SPWG GRPGWHIECS M+S LG D+H Sbjct: 210 ESQVNKQQEKRSPNDFALWKASKPEEPKWPSPWGEGRPGWHIECSVMASAILGNPIDLHA 269 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DLIFPHH+N +AQ+ ++ N +IH G LN+ RKMSKS NF+TI+E+L K Sbjct: 270 GGIDLIFPHHDNSLAQAEACFNCDQWINYFIHLGHLNIADRKMSKSLKNFLTIDEVL--K 327 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++ R +RL + Y ++++ +++ +A Sbjct: 328 RYTPRQ-----VRLNFAIHQYDAVMNYSEEQVEQA 357 >gi|109894936|sp|Q2S3T5|SYC_SALRD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 516 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 163/524 (31%), Positives = 243/524 (46%), Gaps = 85/524 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++YNTL + + I+ ++R Y CGPTVY +AHIGN R + D++ R + Sbjct: 6 FRLYNTLTHETEPVEPIEEEHLRFYSCGPTVYMYAHIGNFRSFLTADLIRRTAEAIGWD- 64 Query: 65 CVTYVRNITDI-----DDKI-------IERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 VT V NITD+ DD + ++RA + N I + T+ F++D Sbjct: 65 -VTNVSNITDVGHLTQDDLVDPGGEDKMQRALEREGERFAN--IYDLARHYTEAFLEDWG 121 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 L P +PRAT H+ + + ++ HAY + + F S+ +YG S + Sbjct: 122 ALNLREPEVRPRATEHVTDQLEAVIELVEKEHAYTTDQGVYFSVESVEDYGHLSGNTEAQ 181 Query: 173 QKMGTR--VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 Q T V E K++P DF LWK W SPWG G PGWHIECS M YLG Sbjct: 182 QLQATERDVVEDPDKRDPRDFALWKHDPQHLMHWHSPWGWGYPGWHIECSVMGMQYLGDR 241 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+H GG DLIFPHHE EIAQ+ + N W+H FL +EG KMSKS GNF T+ + Sbjct: 242 FDLHTGGEDLIFPHHECEIAQNQSL-AGHQVVNYWVHTRFLQVEGEKMSKSKGNFYTVRD 300 Query: 291 LL-----------ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 L+ ++ GG A +R A++ YR+P +FT+ L A + ++ Sbjct: 301 LIAPGPDDDHVPDSVREQGGVDPLA--LRYALMQGQYRKPFNFTLDTLHTAARHVRRYQD 358 Query: 340 TSTS---------------KGIIDP---AVLSALYNDLNT----------VSAIQALHKL 371 + G + P L A+ +DLNT V AI+ +L Sbjct: 359 AAERVDAALAADADGPDELGGRLRPIYDRTLEAMCDDLNTPAATAAALDGVKAIEQTDRL 418 Query: 372 ARESTKN-HDLLPIFNASAHILGIEVCKEH--------------LNKNISIAIEKLVQER 416 + ++ + L NA +LG+ V EH ++S +I+ L+++R Sbjct: 419 NGATARSARNWLDRTNA---LLGV-VEPEHEADQRTDAGSENGLAPAHLSDSIDTLLEDR 474 Query: 417 LILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ AD IR LE+ G + D PD T W+++ Sbjct: 475 EAARADGEYARADAIRDTLEALGIEVMD--TPDG----TEWERR 512 >gi|193216531|ref|YP_001999773.1| cysteinyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1] gi|193001854|gb|ACF07069.1| cysteinyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1] Length = 401 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 212/421 (50%), Gaps = 33/421 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y+CGPTVY++ HIGN RP++ FD++ R RY E + Y+ NITDIDDKII ++ +E Sbjct: 6 YLCGPTVYNYPHIGNMRPIVTFDLMIRAQRYLGDE--IFYLHNITDIDDKIINKSLEE-- 61 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 N + ITS + ++ T PT R T+ + M IQ +I AY+ Sbjct: 62 ----NKSEKEITSFYEKYYLNLFTLFNLEMPTKVIRVTDSLDDMYNYIQRLIDIKAAYQV 117 Query: 149 NNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + FD N YGS S +KI +K+ K NP DF LWK T + SP Sbjct: 118 GKNVFFDIEKYQNTYGSISNQKIANLNYD---EDKFQKNNPFDFALWKE-TSKGIKFASP 173 Query: 208 WGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 +G GRPGWH ECS Y GK DIH GG+DLIFPHHENE Q + A W+ Sbjct: 174 FGEGRPGWHTECSCFIDKYFEGKTIDIHAGGIDLIFPHHENENIQHFALHH-QPIAKNWM 232 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H G LN + +KMSKS GN I ++ LE + A +L ML T+Y +PI+ T + Sbjct: 233 HFGTLNYKNQKMSKSIGNLIYPHDFLE-------KYEADTYKLLMLTTNYAKPINLTDEM 285 Query: 327 LTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES------TKNHD 380 L + ++K+ + SK +++ S +N + A+ A A+ + TK+ + Sbjct: 286 LVLNQNQINKF-KVIASKCLLEKMHDSIDQEKVNHIIALIASLNFAKANEELIKLTKSKE 344 Query: 381 LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 F A ILG +K I+ E+L Q+ + K F AD +R +L KG Sbjct: 345 KYTTFIAIMKILGFNFA----SKTITKEDEELYQQWKNEVANKNFEQADTLRAKLIKKGL 400 Query: 441 I 441 I Sbjct: 401 I 401 >gi|310947220|sp|D7BSS4|MSHC_STRBB RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|297161859|gb|ADI11571.1| cysteinyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1] Length = 409 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 196/366 (53%), Gaps = 31/366 (8%) Query: 21 IDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 +DP + R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TDIDD + Sbjct: 32 LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDIDDPL 89 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 +ERA + D + + + T F +D T L L P H A IP ++ L++ + Sbjct: 90 LERA------VANGDDWTALAERETTLFREDMTALRMLPPRHYIGAVEAIPGIVPLVERL 143 Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFIL 193 G AYE +I F S P++G S R + ++ G P++ KKNP D +L Sbjct: 144 RDAGAAYELEGDIYFSVESDPSFGGVSGLDAEAMRLLSAERGGD--PDRPGKKNPLDPML 201 Query: 194 WKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 W + P EP W+ GRGRPGWHIEC A++ +LG FD+ GGG DL FPHHE + + Sbjct: 202 WLAARPGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGASHA 261 Query: 253 CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 A ++H G + L+G KMSKS GN + ++ L PA IRLA+L Sbjct: 262 QVLTGERPFAKAYVHAGMVALDGEKMSKSKGNLVFVSALRRDGVD-----PA-AIRLALL 315 Query: 313 MTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQ 366 HYRE ++T L EA+ L++W P + ++D + +AL NDL+ SA+ Sbjct: 316 AHHYREDWEWTDGVLQEAQERLARWRAAVSRPDGPPADALLD-EIRTALANDLDAPSALA 374 Query: 367 ALHKLA 372 A+ + A Sbjct: 375 AVDRWA 380 >gi|94495840|ref|ZP_01302419.1| cysteinyl-tRNA synthetase [Sphingomonas sp. SKA58] gi|94424532|gb|EAT09554.1| cysteinyl-tRNA synthetase [Sphingomonas sp. SKA58] Length = 518 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 161/517 (31%), Positives = 243/517 (47%), Gaps = 85/517 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L R + F I+ + R+Y CGPTVY++AHIGN R + D L R L + Sbjct: 23 LRLFNSLTRAVAPFAPIEDGHARVYSCGPTVYNYAHIGNLRAYVFTDTLRRTL--LWKGL 80 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT++ NITD+ DDK+ AR SI I + TQ F ++ L Sbjct: 81 SVTHIINITDVGHLTSDADAGDDKMEAAARASAKSI------WDIAAHYTQAFKQNIADL 134 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 +AP+ AT+++PQMI + I H YE ++ + FD+ S+P+YG+ + + D Sbjct: 135 NIIAPSEWTVATDYVPQMIEFAEKIA-PDHCYELDSGLYFDSRSVPDYGALAGGRDDAAH 193 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R+ K+NP+DF +W++S P E W+SPWG+G PGWH+ECS MS LG+ F Sbjct: 194 --ARIDPVAGKRNPSDFAIWRKSPPGEQRQMEWDSPWGKGAPGWHLECSVMSQARLGQPF 251 Query: 232 DIHGGGLDLIFPHHENEIAQ-----SCC------ADRIEKTANIWIHNGFLNLEGRKMSK 280 DIH GG+D HH NEIAQ +CC D A W+HN FL KMSK Sbjct: 252 DIHTGGIDHREIHHPNEIAQNQAFHACCDPDVGAVDAGFTGARWWMHNNFLVDRQGKMSK 311 Query: 281 SNGNFITINELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEAEILLSK--- 336 S G F T+ L++ P+ RL L HYR ++F+ L A L + Sbjct: 312 SKGGFTTLFSLIDAGVH-------PLAYRLLCLGAHYRSELEFSADNLAAALTRLKRLVM 364 Query: 337 -------------W--PQTSTSKGIIDPAVL-------SALYNDLNTVSAIQALHK-LAR 373 W P+ + + P + +A+ +DL T A+ L + +A Sbjct: 365 GVEGLKARAEGVTWQSPRLDYLRANLHPKLAPLLEQFDAAISDDLMTPRALPLLEEAIAV 424 Query: 374 ESTKNHDLLPIFNASAHILG---IEVCKEHLNKNISIA------IEKLVQERLILLKMKK 424 + + L + A LG + + + L A +E ++ R K Sbjct: 425 KKVPADEKLCLIAAFDQALGFNLLSLTRADLRMRPKDAQLTADQVETELERRAAARANKD 484 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 F+ +D IR +L +KG + D +P RW +P Sbjct: 485 FALSDTIRDELIAKGVEVMD-GDP------LRWDWRP 514 >gi|118084394|ref|XP_416955.2| PREDICTED: similar to MGC88928 protein [Gallus gallus] Length = 624 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 180/310 (58%), Gaps = 22/310 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y CGPTVYD AH+G+A + FD++ R+L ++ E V V ITDIDDKII RA + + Sbjct: 64 YSCGPTVYDHAHLGHACSYVRFDIIRRILTRFF-ETEVIMVMGITDIDDKIIRRANEMNI 122 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE- 147 S P+ A++ I ++ F +D L L PT R T +IPQ+I I+ II +G AY Sbjct: 123 S-PV--ALARIYEED---FKQDMASLKVLPPTVYMRVTENIPQIISFIKTIIANGQAYAT 176 Query: 148 ANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 + + FD +S YG + D Q +++ + DF LWK + P E W S Sbjct: 177 SQGNVYFDVNSWGERYGVLTAVSPDTQGEAVDTDKRHGR----DFALWKAAKPQELSWSS 232 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG+GRPGWHIECS +SS GK DIH GG+DL FPHHENEIAQ + E+ N ++ Sbjct: 233 PWGKGRPGWHIECSTISSAVFGKQLDIHTGGIDLAFPHHENEIAQCEVYHQCEQWGNYFL 292 Query: 267 HNGFLNLEG--RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 H+G L+++G KMSKS N+ITI + L KKF + R+ L + Y ++F+ Sbjct: 293 HSGHLHVKGSQEKMSKSLKNYITIKDFL--KKFSSDQF-----RMFCLRSRYSSAVEFSD 345 Query: 325 QRLTEAEILL 334 + + +A+ +L Sbjct: 346 ETMNDAKNVL 355 >gi|156082812|ref|XP_001608890.1| cysteinyl-tRNA synthetase [Babesia bovis T2Bo] gi|154796140|gb|EDO05322.1| cysteinyl-tRNA synthetase, putative [Babesia bovis] Length = 662 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 123/292 (42%), Positives = 163/292 (55%), Gaps = 25/292 (8%) Query: 16 TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI 75 EF + I Y CGPTVYD AH+G+AR + D + +L Y+ V V N+TDI Sbjct: 71 VEFVPENGRRINWYCCGPTVYDTAHLGHARTYVACDTIRSILERYFNYD-VHLVINVTDI 129 Query: 76 DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 DDKII+RA E N+ + S+ +F +D L P R + +P++I Sbjct: 130 DDKIIQRANDE--GCKFNE----LASRWEHEFWEDMAALGVDPPNVITRVSEFLPEIISY 183 Query: 136 IQNIILHGHAYEANNEIIFDTSSI------------PN-YGSFSRRKIDEQKMGTRVPEK 182 I+ I+ +G+AYEA+ + FD + PN Y R E GT Sbjct: 184 IETIMKNGYAYEADGSVYFDIDAFIGSDKHVYAKLEPNSYNDLCRITDGE---GTLGEVS 240 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK--VFDIHGGGLDL 240 HKK+P DF LWK++ P EP W SPWG GRPGWHIECSAM S+ GK + DIH GG+DL Sbjct: 241 THKKSPRDFALWKKAKPGEPFWSSPWGEGRPGWHIECSAMCSNVFGKDTIIDIHSGGIDL 300 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 FPHH+NEIAQS + N ++H G L+++G KMSKS NFI+I +LL Sbjct: 301 KFPHHDNEIAQSEAFSDRNQWVNYFLHFGHLHIQGLKMSKSLKNFISIKQLL 352 >gi|271969633|ref|YP_003343829.1| cysteine--tRNA ligase [Streptosporangium roseum DSM 43021] gi|270512808|gb|ACZ91086.1| Cysteine--tRNA ligase [Streptosporangium roseum DSM 43021] Length = 459 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 205/396 (51%), Gaps = 40/396 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R++ ++RMY CGPTVY +AH+GN R ++ D++ R+ Sbjct: 2 LRLYDTRNRQVGPVLPEGARSMRMYTCGPTVYRYAHVGNFRSYVLADLIRRVSERQ--RI 59 Query: 65 CVTYVRNITDI-------------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 V RNITD+ +DKI+ +AR E + + I F+ DT Sbjct: 60 RVVACRNITDVGHLVDDAEIDPAGEDKILLQARAEGRT-----GLEIARFYEAA-FLSDT 113 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKI 170 L P H PRAT I MI +I +I GHAY + + FD +S P YG S ++ Sbjct: 114 ATLNIRPPEHSPRATETIDLMIEMIAKLIEKGHAYPTPDGSVFFDAASFPTYGEISGNRL 173 Query: 171 DEQKMGTRVPE-KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 D K G R+ K+ AD+ LWK S E WE+PWGRG PGWHIECSAMS +LG+ Sbjct: 174 DRLKPGHRLEGVDPRKRFHADWALWKPSD-REMTWEAPWGRGFPGWHIECSAMSLRFLGE 232 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 D+H GG+DL FPHHE+E AQS E + W+H L +GRKM+KS GN + + Sbjct: 233 HIDVHTGGIDLRFPHHEDERAQSDATAGHEVVRH-WVHGEHLLFDGRKMAKSTGNVVLLQ 291 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQTSTSKG 345 ++++ +RLA+L YR+ ++ T L A+ L +W + S + Sbjct: 292 DVVDA------GLDPLAVRLALLEHRYRQQMNLTWDTLRAADRTLRRWRSHVAEWSETPS 345 Query: 346 IIDPA-----VLSALYNDLNTVSAIQALHKLAREST 376 PA + +A +DL+T A++ + +L R+ + Sbjct: 346 RPMPAERVSRIEAAFDDDLDTPLALRLMRELERDDS 381 >gi|332654253|ref|ZP_08419997.1| cysteine--tRNA ligase [Ruminococcaceae bacterium D16] gi|332517339|gb|EGJ46944.1| cysteine--tRNA ligase [Ruminococcaceae bacterium D16] Length = 480 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 234/490 (47%), Gaps = 74/490 (15%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ K EF P ++ MY CGPTVY FAHIGN R I+ DVL + LRY + V Sbjct: 3 LYNSATHKKEEFTTHTPGHVEMYTCGPTVYHFAHIGNLRSYIMEDVLEKFLRYSGYD--V 60 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 V NITD+ +DK+++ A++EH ++ I T F D +L Sbjct: 61 NRVMNITDVGHLSSDADTGEDKMLKGAKREHKTV------MEIAQYYTDAFFSDCAKLNI 114 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P AT I + I ++ ++ G+AY A + FD+S + Y F+ ++ +G Sbjct: 115 KTPDTVQPATGCIDEYIKIVSGLLDKGYAYVAGGNVYFDSSKLDRYYIFNDHNEEDLAVG 174 Query: 177 TR--VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R V E +K+N DF+LW + E W+SPWG G PGWHIECS +S Y G+ Sbjct: 175 VREGVEEDSNKRNKNDFVLWFTKSKFEDQALKWDSPWGVGYPGWHIECSGISLKYNGEYL 234 Query: 232 DIHGGGLDLIFPHHENEIAQS-------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 D+H GG+D FPHH NEIAQS C W H LN KMSKS G Sbjct: 235 DLHCGGIDNAFPHHTNEIAQSESYLGHPWCKQ--------WFHVHHLNTNSGKMSKSKGE 286 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS- 343 F+T++ LLE K + S+ R L +HYR+ + F+ + L A+ K + + Sbjct: 287 FLTVS-LLEEKGYDPLSY-----RFFCLQSHYRKGLVFSWENLDNAQGAYQKLIKRIAAL 340 Query: 344 --KGIIDPAV--------LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG 393 G D AV L + NDLNT A+ L+ + T + L I +L Sbjct: 341 KEGGEPDQAVVQEYREKFLQQVGNDLNTSMAVTLLYDALKAKTDDATKLAILGDFDQVLS 400 Query: 394 I-------EVCKEHLNK------NISI------AIEKLVQERLILLKMKKFSSADYIRKQ 434 + +V KE + N +I A++ LV ER K K F+ AD IR + Sbjct: 401 LSLLEKAAQVRKEQAAQKTTSAGNYTITGEGDPAVDALVLERYQAKKAKDFAKADQIRDE 460 Query: 435 LESKGFILED 444 L+++G + D Sbjct: 461 LKAQGIEITD 470 >gi|83815337|ref|YP_445146.1| cysteinyl-tRNA synthetase [Salinibacter ruber DSM 13855] gi|83756731|gb|ABC44844.1| cysteinyl-tRNA synthetase [Salinibacter ruber DSM 13855] Length = 569 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 163/524 (31%), Positives = 243/524 (46%), Gaps = 85/524 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++YNTL + + I+ ++R Y CGPTVY +AHIGN R + D++ R + Sbjct: 59 FRLYNTLTHETEPVEPIEEEHLRFYSCGPTVYMYAHIGNFRSFLTADLIRRTAEAIGWD- 117 Query: 65 CVTYVRNITDI-----DDKI-------IERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 VT V NITD+ DD + ++RA + N I + T+ F++D Sbjct: 118 -VTNVSNITDVGHLTQDDLVDPGGEDKMQRALEREGERFAN--IYDLARHYTEAFLEDWG 174 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 L P +PRAT H+ + + ++ HAY + + F S+ +YG S + Sbjct: 175 ALNLREPEVRPRATEHVTDQLEAVIELVEKEHAYTTDQGVYFSVESVEDYGHLSGNTEAQ 234 Query: 173 QKMGTR--VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 Q T V E K++P DF LWK W SPWG G PGWHIECS M YLG Sbjct: 235 QLQATERDVVEDPDKRDPRDFALWKHDPQHLMHWHSPWGWGYPGWHIECSVMGMQYLGDR 294 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+H GG DLIFPHHE EIAQ+ + N W+H FL +EG KMSKS GNF T+ + Sbjct: 295 FDLHTGGEDLIFPHHECEIAQNQSL-AGHQVVNYWVHTRFLQVEGEKMSKSKGNFYTVRD 353 Query: 291 LL-----------ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 L+ ++ GG A +R A++ YR+P +FT+ L A + ++ Sbjct: 354 LIAPGPDDDHVPDSVREQGGVDPLA--LRYALMQGQYRKPFNFTLDTLHTAARHVRRYQD 411 Query: 340 TSTS---------------KGIIDP---AVLSALYNDLNT----------VSAIQALHKL 371 + G + P L A+ +DLNT V AI+ +L Sbjct: 412 AAERVDAALAADADGPDELGGRLRPIYDRTLEAMCDDLNTPAATAAALDGVKAIEQTDRL 471 Query: 372 ARESTKN-HDLLPIFNASAHILGIEVCKEH--------------LNKNISIAIEKLVQER 416 + ++ + L NA +LG+ V EH ++S +I+ L+++R Sbjct: 472 NGATARSARNWLDRTNA---LLGV-VEPEHEADQRTDAGSENGLAPAHLSDSIDTLLEDR 527 Query: 417 LILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ AD IR LE+ G + D PD T W+++ Sbjct: 528 EAARADGEYARADAIRDTLEALGIEVMD--TPDG----TEWERR 565 >gi|332242118|ref|XP_003270233.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial isoform 1 [Nomascus leucogenys] Length = 564 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 125/324 (38%), Positives = 179/324 (55%), Gaps = 24/324 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 52 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFG-- 109 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C + V ITD+DDKII+RA + +N + + + S + F +D L L PT Sbjct: 110 CNIVMVMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYL 163 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II GHAY A + FD + + YG + +G P Sbjct: 164 RVTENIPQIISFIEGIIARGHAYSTAKGNVYFDLKARGDKYGKLV--GVVPGPVGE--PA 219 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL Sbjct: 220 DSDKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLA 279 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + E+ N ++H+G L+++G+ KMSKS N+ITI + L+T Sbjct: 280 FPHHENEIAQCEVFHQCEQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKT----- 334 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT 323 + R L + YR I+++ Sbjct: 335 --FSPDTFRFFCLRSSYRSAINYS 356 >gi|117928379|ref|YP_872930.1| cysteinyl-tRNA synthetase [Acidothermus cellulolyticus 11B] gi|310947169|sp|A0LU34|MSHC_ACIC1 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|117648842|gb|ABK52944.1| cysteinyl-tRNA synthetase [Acidothermus cellulolyticus 11B] Length = 403 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/404 (31%), Positives = 210/404 (51%), Gaps = 33/404 (8%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +++T R++ + ++ MYVCG T YD H+G+A + FD+L R ++ Sbjct: 20 SLFDTASRRLVTVGSQQGAS--MYVCGITPYDATHLGHAATYVAFDLLVRT--WHDAGVT 75 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V Y +N+TD+DD ++ERARQ ++ I ++ T +F D L + P Sbjct: 76 VRYAQNVTDVDDPLLERARQ------VDQPWEAIAARETAKFRADMAALRVVPPDRYVGV 129 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ------KMGTRV 179 +PQ+I LI+ + G YE + + F T +IP++G+ S D+ + G Sbjct: 130 VESLPQIIGLIEVLRSRGLTYELDGDQYFATHAIPDFGAVSHLGRDDMIALFAARGGD-- 187 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 P++ KK+P D +LW+ P EP W +P+GRGRPGWH+EC+A++ +L D+ GGG D Sbjct: 188 PDRAGKKDPLDALLWRGKRPEEPSWPAPFGRGRPGWHVECAAIALTHLPLPLDVQGGGAD 247 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHH+ AQ+ A + A ++H G + +G KMSKS GN + +++L Sbjct: 248 LVFPHHDMTAAQAEAATG-RRFARAYVHTGLVAYQGEKMSKSLGNLVFVSDLCAAGA--- 303 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLS 353 +RLA+L HYR ++T + L EA L++W P+ + G++ AV Sbjct: 304 ---DPMAVRLALLDHHYRTEWEWTPRLLDEATDRLAEWRAAVRRPRGAPGDGLL-AAVRD 359 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH-ILGIEV 396 L +DL+ AI + + + + D + A A +LG+ + Sbjct: 360 RLADDLDAPGAIALIDEWTTQDGDDPDAPTLVAAMADALLGVHL 403 >gi|332242120|ref|XP_003270234.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial isoform 2 [Nomascus leucogenys] Length = 572 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 125/324 (38%), Positives = 179/324 (55%), Gaps = 24/324 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 52 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFG-- 109 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C + V ITD+DDKII+RA + +N + + + S + F +D L L PT Sbjct: 110 CNIVMVMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYL 163 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II GHAY A + FD + + YG + +G P Sbjct: 164 RVTENIPQIISFIEGIIARGHAYSTAKGNVYFDLKARGDKYGKLV--GVVPGPVGE--PA 219 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL Sbjct: 220 DSDKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLA 279 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQ + E+ N ++H+G L+++G+ KMSKS N+ITI + L+T Sbjct: 280 FPHHENEIAQCEVFHQCEQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKT----- 334 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT 323 + R L + YR I+++ Sbjct: 335 --FSPDTFRFFCLRSSYRSAINYS 356 >gi|294013315|ref|YP_003546775.1| cysteinyl-tRNA synthetase [Sphingobium japonicum UT26S] gi|292676645|dbj|BAI98163.1| cysteinyl-tRNA synthetase [Sphingobium japonicum UT26S] Length = 509 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 187/356 (52%), Gaps = 42/356 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L R + F I P++ R+Y CGPTVY++AH+GN R + D L R L + + Sbjct: 16 LRLFNSLTRAVEPFAPIQPNHARVYSCGPTVYNYAHLGNLRAYVFTDTLRRTLLWKGLD- 74 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT++ NITD+ DDK+ AR + SI I + T F ++ L Sbjct: 75 -VTHIINITDVGHLTSDADAGDDKMEAAARAQAKSI------WDIAAHYTDAFKRNIADL 127 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P+ AT+++PQMI + I H YE + + FD+SS+P+YG+ + + D Sbjct: 128 NIIPPSEWTVATDYVPQMIAFAEKIA-PAHCYELESGLYFDSSSVPDYGALAGGRDDAAH 186 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R+ K+NP+DF +W++S P E W+SPWG+G PGWH+ECS MS LG F Sbjct: 187 --ARIDPVAGKRNPSDFAIWRKSPPGEQRQMEWDSPWGKGAPGWHLECSVMSEARLGHPF 244 Query: 232 DIHGGGLDLIFPHHENEIAQ-----SCCADRIEKTANI-----WIHNGFLNLEGRKMSKS 281 DIH GG+D HH NEIAQ CC + A W+HN FL KMSKS Sbjct: 245 DIHTGGIDHREIHHPNEIAQNQAFHGCCGEADAAAAGFTGARWWMHNNFLVDRQGKMSKS 304 Query: 282 NGNFITINELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEAEILLSK 336 G F T+ L++ P+ RL L HYR ++F+ + ++ A L + Sbjct: 305 KGGFTTLFSLIDAGVH-------PLAYRLLCLGAHYRSELEFSAESVSAALTRLKR 353 >gi|28493314|ref|NP_787475.1| cysteinyl-tRNA synthetase [Tropheryma whipplei str. Twist] gi|28572575|ref|NP_789355.1| cysteinyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|61216626|sp|Q83GF1|SYC1_TROWT RecName: Full=Cysteinyl-tRNA synthetase 1; AltName: Full=Cysteine--tRNA ligase 1; Short=CysRS 1 gi|61216630|sp|Q83HS8|SYC1_TROW8 RecName: Full=Cysteinyl-tRNA synthetase 1; AltName: Full=Cysteine--tRNA ligase 1; Short=CysRS 1 gi|28410707|emb|CAD67093.1| cysteinyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|28476355|gb|AAO44444.1| cysteinyl-tRNA synthetase [Tropheryma whipplei str. Twist] Length = 466 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 138/394 (35%), Positives = 195/394 (49%), Gaps = 42/394 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y+TL R+I D + +YVCGPTV HIG+ R +V+D L R L Y Sbjct: 3 LNLYDTLSRRIVTLDCRD--RVELYVCGPTVQSPPHIGHMRSGVVYDCLRRWLEY--KGL 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ AR S + I + + F + L P ++P Sbjct: 59 PVLYVRNITDIDDKILASAR----STETGETWWQIAYRVSGLFNEAYKALFVKPPDYEPL 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA---NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 T HIP +I I+ +I AY A + + F P+YG + D++ + Sbjct: 115 VTAHIPDIIKAIEILIQKNVAYRAMDGSGNVFFSIDKHPSYGELT----DQKDLLIDDCI 170 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF LWK +P WESPWG GRPGWHIECS M++ YLG F IHGGG+ Sbjct: 171 TPGKRDPRDFTLWKEKKDTDPDLAFWESPWGPGRPGWHIECSVMATKYLGTRFAIHGGGV 230 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENE+AQ+ A+IW+H G +N+EG KMSKS GN + + + L Sbjct: 231 DLRFPHHENELAQARALG--AHFADIWMHTGAVNVEGIKMSKSFGNSVLVQDALSKVS-- 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---------------EILLSKWPQTSTS 343 +R L HYR +++T L++A + L + + Sbjct: 287 -----PSALRYYFLTAHYRSTLNYTENSLSQACNTWNKLQGCIYRVYDYLEREGYENDFC 341 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTK 377 ++ ++L NDLN A+ +H RE + Sbjct: 342 VSQLNTDFSTSLDNDLNIPEALAIVHNKVREMNR 375 >gi|76799584|ref|ZP_00781709.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 18RS21] gi|76585067|gb|EAO61700.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 18RS21] Length = 351 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 200/367 (54%), Gaps = 35/367 (9%) Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 ++D L T PR +++ ++I ++ ++ AYEAN ++ F S +Y + Sbjct: 1 MEDVAALGVKPATKNPRVIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLAN 60 Query: 168 RKIDEQKMGT--RVP-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSS 224 + +++ ++G RV E K+NP DF LWK + E WESPWG+GRPGWHIECS M++ Sbjct: 61 KTLEDLEIGASGRVDGEGEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMAT 120 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNG 283 LG DIHGGG DL FPHH NEIAQS + KT AN W+HNGF+N++ KMSKS G Sbjct: 121 EILGDTIDIHGGGADLEFPHHTNEIAQSEA--KTGKTFANYWMHNGFVNVDNEKMSKSLG 178 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 NFIT++++L +S VIR + YR+P++FT + + +AE+ L K+ + + + Sbjct: 179 NFITVHDML-------KSVDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNL-KYLKNTFN 230 Query: 344 KGIID-----------PAVLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASA 389 I + A A+ +D NT + I + ++A+ H + F Sbjct: 231 LPIQENANDEELEQFVKAFQGAMDDDFNTANGITVIFEMAKWINSGHYTSRVKETFAELL 290 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 I GI +E L+ + IE L+++R + F++AD IR +L +G L D K Sbjct: 291 EIFGIVFQEEVLDAD----IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTK--- 343 Query: 450 NGQRMTR 456 +G R TR Sbjct: 344 DGVRWTR 350 >gi|330805509|ref|XP_003290724.1| hypothetical protein DICPUDRAFT_155256 [Dictyostelium purpureum] gi|325079146|gb|EGC32761.1| hypothetical protein DICPUDRAFT_155256 [Dictyostelium purpureum] Length = 638 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/321 (40%), Positives = 183/321 (57%), Gaps = 22/321 (6%) Query: 18 FQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77 F D I Y CGPTVYD +H+G+AR I FD+L R++R Y G + +V NITDIDD Sbjct: 48 FSNKDGKTITWYACGPTVYDASHMGHARTYISFDILRRVMRDYLGFN-IRFVMNITDIDD 106 Query: 78 KIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 KII R++++ N + S ++ K F +D L L P R T ++PQ++ +Q Sbjct: 107 KIIIRSKEQ------NISHSDLSKKWESSFFEDMKALNVLPPDALTRVTEYVPQIVDYVQ 160 Query: 138 NIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKM-----GTRVPEKYHKKNPA 189 II +G AYE+ + FDT S +YG + + + G K++P Sbjct: 161 KIIDNGFAYESEGSVYFDTQSFIKSHDYGKLEPNSVGNENLAAEGEGALSVGISDKRSPF 220 Query: 190 DFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEI 249 DF LWK+S EP W SPWG GRPGWHIECSAM+S LG DIH GG DL FPHH+NE+ Sbjct: 221 DFALWKKSKEGEPVWSSPWGEGRPGWHIECSAMASDILGDNIDIHSGGSDLKFPHHDNEL 280 Query: 250 AQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 AQS ++ N +IH+G L ++G KMSKS NFITI E LE K+ R +R+ Sbjct: 281 AQSEAYFGNKQWINYFIHSGHLLIDGLKMSKSLKNFITIKEALE--KYTSRQ-----MRM 333 Query: 310 AMLMTHYREPIDFTVQRLTEA 330 ++ Y + ++++ + + A Sbjct: 334 FFILHKYDKAMNYSSESMGYA 354 >gi|12045107|ref|NP_072918.1| cysteinyl-tRNA synthetase [Mycoplasma genitalium G37] gi|1351147|sp|P47495|SYC_MYCGE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|3844851|gb|AAC71473.1| cysteinyl-tRNA synthetase [Mycoplasma genitalium G37] gi|166078699|gb|ABY79317.1| cysteinyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 428 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 214/440 (48%), Gaps = 53/440 (12%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y+CGPTVY+ H+GN RP+IVFDVL R+L+ + V +V+NITDIDDKII+ A+Q Sbjct: 18 INIYLCGPTVYNDLHLGNTRPLIVFDVLNRVLKK--AKYTVNFVQNITDIDDKIIKIAQQ 75 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + S S++T + + +L L P + T I ++ I ++ HA Sbjct: 76 QEVSE------SVVTKQQITAYKSLLKKLNIL-PIKHIQITEKIDKIPDYIDQLVNQNHA 128 Query: 146 Y-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y N + F +S+ YG + R + ++ T KKN DF+LWK +T W Sbjct: 129 YVSTQNNVYFAVNSLKQYGYLANRMVHLEETDTD------KKNKLDFVLWKITTA-GIKW 181 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 S WG GRPGWH+EC+ + + IHGGG+DL FPHHENE A T + Sbjct: 182 NSKWGLGRPGWHVECAFLIDYCFKNELTIHGGGVDLKFPHHENENALHMALYNQPITKH- 240 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT- 323 W+H G L +E +KMSKS NF+ + L F V+R HY PID Sbjct: 241 WMHIGHLMIENQKMSKSLQNFLLAVDFLNFHDF-------RVLRWIFYQKHYLHPIDLNQ 293 Query: 324 ---------VQRLTEAEILLSKWPQTSTSKGIIDPA----VLSALYNDLNTVSAIQALHK 370 +QR+ + + W S +I P V SAL ++LN +A+ A+ K Sbjct: 294 SLIEKANNDIQRIAKTLNVARTWLVYSEQSELISPKQYDPVFSALLDNLNFANAVAAIWK 353 Query: 371 LARE---STKNHDL------LPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 L ++ S K D L S +LGI H N+ +L++E IL K Sbjct: 354 LIKKINTSIKTKDFSVLREQLSFLEWSIDLLGISFKSIHTKLNV-----RLIKEWSILHK 408 Query: 422 MKKFSSADYIRKQLESKGFI 441 K AD IRK+L K + Sbjct: 409 QKAMDKADQIRKKLIKKMLL 428 >gi|241856247|ref|XP_002416056.1| cysteinyl-tRNA synthetase, putative [Ixodes scapularis] gi|215510270|gb|EEC19723.1| cysteinyl-tRNA synthetase, putative [Ixodes scapularis] Length = 547 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 176/336 (52%), Gaps = 25/336 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++Y+ + R + + Y CGPTVYD +H+G+A + D++ R+L ++ + Sbjct: 42 IRVYDPIGRAKVPLKLQHERVAKWYSCGPTVYDSSHVGHAYTYLRTDIIRRILGRFF-DV 100 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V ITDIDDKII RA Q + + + + ++F +D +L L PT R Sbjct: 101 DVVMVMGITDIDDKIIARAVQ------LGETPETLARRYEREFREDIAKLGVLPPTLYAR 154 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + ++P ++ + + GHAY A + + FD S P+YG F MG+ +P Sbjct: 155 VSEYVPSVVRFCEVLRDKGHAYAAADGSLYFDVSQRPDYGLFR-----APGMGSSIPVVG 209 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAM+S LG DIH GG DL FP Sbjct: 210 VKRDPRDFALWKGAKPGEPQWTSPWGPGRPGWHIECSAMASELLGDSVDIHTGGRDLAFP 269 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFL-----NLEGRKMSKSNGNFITINELLETKKFG 298 HHENE AQS + W+H G + + KMSKS GN + + +LE Sbjct: 270 HHENEEAQSRSRHGKSRWVRHWLHMGQVMVAKGGTDAVKMSKSAGNTLPLQTVLEDHS-- 327 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 A +RL L +HY + + L +A++ L Sbjct: 328 -----AETLRLLCLRSHYSADVVVGPEALHQAQVNL 358 >gi|319956986|ref|YP_004168249.1| cysteinyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511] gi|319419390|gb|ADV46500.1| cysteinyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511] Length = 470 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 159/490 (32%), Positives = 245/490 (50%), Gaps = 56/490 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++I++++++ F+ I P +YVCGPTVYD AH+G+AR + FD+L R LR G Sbjct: 2 QMQIFDSVKKAKVPFEPIRPGEASIYVCGPTVYDEAHLGHARSALSFDLLSRTLR-SLGY 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K VT +N TDIDDKII++ + ++ +T Q+++++ L +P Sbjct: 61 K-VTLAKNFTDIDDKIIKKINE------TGQSLQELTDYYIQRYLEEMAALGVRRADIEP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE- 181 +AT + + +++ +I G AY + ++ FDT +YG S DE++ +R+ E Sbjct: 114 KATESLDAIQAMVEGLIEKGCAYRTESGDVYFDTCKDEHYGEISHMLGDEEEARSRLCEI 173 Query: 182 -KYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAM-SSHYLGK---VFDIHG 235 K++P DF LWK S + +++ G GRPGWHIECSAM H+ G DIHG Sbjct: 174 KTGEKRHPRDFALWKACSGEGDVCFDTELGSGRPGWHIECSAMIEKHFQGNGEYTIDIHG 233 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DL+FPHHENE AQ+ CA E A W+HNGF+ ++G KMSKS GN + + L Sbjct: 234 GGADLLFPHHENEAAQTRCATGHE-IAKYWMHNGFVQIDGEKMSKSLGNSFFLKDALAI- 291 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGI 346 +P ++R ++ HYR +F L A+ L K + ++ Sbjct: 292 ------YPGELLRFYLIGVHYRNDFNFNEVDLQAAKKRLDKLYRLKKRLTPGKVGEAEAG 345 Query: 347 IDPAVLSALYNDLNTVSAI-----------QALHKLARESTKNHDLLPIFNASAHILGIE 395 A+ A+ +DLNT A+ +AL R+ LL +LG Sbjct: 346 FVQALKEAMADDLNTSKALAIVDEMVSAANEALDANPRDKVLKRTLLGNIAFIDELLGFG 405 Query: 396 VC------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 + +++ IE + ER K K FS AD IR +L+ KG L D P+ Sbjct: 406 GSDPYAWFQHGVSEEERQEIEAKIAERDAAKKAKDFSKADTIRDELKEKGIALMD--TPE 463 Query: 450 NGQRMTRWKQ 459 T+W++ Sbjct: 464 G----TKWEK 469 >gi|147901608|ref|NP_001083370.1| probable cysteinyl-tRNA synthetase, mitochondrial precursor [Xenopus laevis] gi|82237606|sp|Q6PA41|SYCM_XENLA RecName: Full=Probable cysteinyl-tRNA synthetase, mitochondrial; AltName: Full=Cysteine--tRNA ligase; Short=CysRS; Flags: Precursor gi|38014676|gb|AAH60463.1| MGC68641 protein [Xenopus laevis] Length = 572 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/330 (40%), Positives = 188/330 (56%), Gaps = 22/330 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN+L RK DP+ Y CGPTVYD AH+G+A + FD + R+L +G Sbjct: 55 IKVYNSLTRKKEPLILADPTVATWYSCGPTVYDHAHLGHACSYVRFDTIRRILLKVFGID 114 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +TDIDDKII+RA++ +N + + Q F +D T L L PT R Sbjct: 115 IVMAMV-VTDIDDKIIKRAKE------LNISPVALARTYEQDFKQDMTALRVLPPTVYMR 167 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 T IPQ+I IQ II +GHAY + + FD SI + YG F+ D + + +K Sbjct: 168 VTESIPQIISFIQQIIANGHAYSTSQGNVYFDVQSIGDQYGKFNDSFCDAASE-SALQDK 226 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 H + DF LWK S P EP W SPWG+GRPGWHIECS ++S GK DIH GG+DL F Sbjct: 227 RHIR---DFALWKTSKPEEPYWASPWGKGRPGWHIECSTIASSVFGKHLDIHTGGIDLAF 283 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQ + + N ++H G L+L+G KMSKS N++TI E L + Sbjct: 284 PHHENEIAQCEAYHQSTQWGNYFLHTGHLHLKGNEEKMSKSLKNYVTIKEFL-------K 336 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 S+ +R+ L + Y+ ++++ + + +A Sbjct: 337 SFSPDHLRMFCLRSKYKSAVEYSKESMHDA 366 >gi|260787696|ref|XP_002588888.1| hypothetical protein BRAFLDRAFT_268799 [Branchiostoma floridae] gi|229274059|gb|EEN44899.1| hypothetical protein BRAFLDRAFT_268799 [Branchiostoma floridae] Length = 512 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 145/407 (35%), Positives = 207/407 (50%), Gaps = 60/407 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+L R+ + S Y CGPTVYD AH+G+A + FD++ R++ ++ V Sbjct: 2 VYNSLCRRKVPLILPNKSFASWYQCGPTVYDHAHLGHACCYVKFDIIRRIMEDFFNIDLV 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 V ITDIDDKII +AR+ +N + + +F +D RL PT R T Sbjct: 62 M-VMGITDIDDKIISKARE------LNMEFTHVAQTFANEFKRDMVRLRVQPPTVYTRVT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPN-YGSFS-------RRKIDEQKMGT 177 N++PQ+I +Q II G+AY +N + FD + YG S +D++K G Sbjct: 115 NYMPQIITFVQKIIDRGYAYPTDNGSVYFDVRKYGDRYGKLSVPSCFFLSPAVDKEKRGF 174 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG--RPGWHIECSAMSSHYLGKVFDIHG 235 R DF LWK P EP W SPWG+G RPGWHIECS M+S G DIH Sbjct: 175 R-----------DFALWKAGKPGEPWWTSPWGKGKGRPGWHIECSTMASAIFGDQLDIHT 223 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN--LEGRKMSKSNGNFITINELLE 293 GG+DL+FPHHENEIAQ + + AN ++H G L+ + KMSKS N ITI E LE Sbjct: 224 GGIDLMFPHHENEIAQCEAHHCVPQWANYFLHAGHLHKTSDKDKMSKSLKNTITIREFLE 283 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---EILLSKWPQTSTS--KG--- 345 + A R+ LMT YR +++ + EA + L+ + + + +G Sbjct: 284 -------KYTANQFRIFCLMTRYRSVVEYCDTMMNEAVSVQRTLTSFLNNADAYIRGQLQ 336 Query: 346 --IIDPAVL------------SALYNDLNTVSAIQALHKLARESTKN 378 ID A+L A+ +D +T +A++A+ L R + K Sbjct: 337 CEAIDEALLMEKLGETKDKFRRAISDDFDTRAALEAILHLVRVTNKQ 383 >gi|26334827|dbj|BAC31114.1| unnamed protein product [Mus musculus] gi|148690121|gb|EDL22068.1| mCG11180, isoform CRA_d [Mus musculus] Length = 335 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 174/313 (55%), Gaps = 18/313 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 R T +IPQ+I I+ II HGHAY A + FD + G + ++ T P Sbjct: 149 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHA---RGDKYGKLVNTVPSATAEPGD 205 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ +DF LWK + P E W SPWG GRPGWHIECS M+S G DIH GG+DL F Sbjct: 206 SDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDLAF 265 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS + ++ N ++H+G L+++G KMSKS N+ITI + + G Sbjct: 266 PHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDSAGLQAVGAE 325 Query: 301 SWPAPVIRLAMLM 313 P + A+L+ Sbjct: 326 P---PGLLFALLL 335 >gi|15639085|ref|NP_218531.1| cysteinyl-tRNA synthetase [Treponema pallidum subsp. pallidum str. Nichols] gi|189025325|ref|YP_001933097.1| cysteinyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14] gi|6094392|sp|O83129|SYC_TREPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735067|sp|B2S239|SYC_TREPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|3322350|gb|AAC65085.1| cysteinyl-tRNA synthetase (cysS) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017900|gb|ACD70518.1| cysteinyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14] gi|291059509|gb|ADD72244.1| cysteinyl-tRNA synthetase [Treponema pallidum subsp. pallidum str. Chicago] Length = 520 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 161/523 (30%), Positives = 247/523 (47%), Gaps = 98/523 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ FQ + ++R+Y CGPTVY++ H+GN R + D + R L ++ G + Sbjct: 3 LRVYNTLTRQQEHFQPWEHGHVRLYGCGPTVYNYPHLGNLRAYVFQDTVRRTL-HFLGYR 61 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VTYV NITD+ +DK++ R+ Q H ++ + + F +DT L Sbjct: 62 -VTYVMNITDVGHLESDADSGEDKLV-RSAQAH-----GHSVLQVAAHYRAAFFRDTALL 114 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 P+ A++ I MI I+ ++ GHAY A + FD S P+Y SF +++ + Sbjct: 115 GIEEPSIVCNASDCIQDMIAFIEQLLARGHAYCAGGNVYFDVRSFPSYESFGSAAVEDVQ 174 Query: 175 MG-----TRVPEKYHKKNPADFILW-KRSTPMEPG--WESPWGRGRPGWHIECSAMSSHY 226 G RV HK++ DF+LW RS + W+SPWGRG PGWHI CSAMS + Sbjct: 175 EGEDAARARVAHDTHKRDARDFVLWFTRSKFVRHALTWDSPWGRGYPGWHIGCSAMSMKF 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL--NLEGR-------- 276 LG DIH GG+D I HH NE AQ C A W+H+ FL L+ R Sbjct: 235 LGPRCDIHIGGVDHIRVHHRNERAQ-CEAITGAPWVRYWLHHEFLLMQLQKRAVHADMGS 293 Query: 277 -------KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT------ 323 KMSKS G F+T++ L E R + R +L YR + F+ Sbjct: 294 SVVSSFSKMSKSCGQFLTLSSLQE------RGFQPADFRFFLLSGQYRTQLAFSWDALKT 347 Query: 324 --------VQRL----------------TEAEILLSKWPQTSTSKG-IIDPAVLSALYND 358 V+R+ T AE + ++ S+ ++ +AL +D Sbjct: 348 ARAARRSFVRRVARVVDAARATTGSVRGTSAECAAERVCESRASESELLLTDFRAALEDD 407 Query: 359 LNTVSAIQALHKLARESTKNHDL-LPIFNASAHILGIEVCKE---HLNKNISIA------ 408 +T A+ AL KL R+++ L + + +LG+ + +E L+ + Sbjct: 408 FSTPRALSALQKLVRDTSVPPSLCVSALQVADTVLGLGIIQEATASLSAQVPAGDTLPQR 467 Query: 409 -------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I +LV+ R + + F AD IR+QL+++G LED Sbjct: 468 PLPSEEWIGQLVRARAHARQTRDFPRADEIRRQLKAEGIELED 510 >gi|307295116|ref|ZP_07574958.1| cysteinyl-tRNA synthetase [Sphingobium chlorophenolicum L-1] gi|306879590|gb|EFN10808.1| cysteinyl-tRNA synthetase [Sphingobium chlorophenolicum L-1] Length = 505 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 38/352 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L R + F I P++ R+Y CGPTVY++AH+GN R + D L R L + + Sbjct: 16 LRLFNSLTRTVDPFAPIQPNHARVYSCGPTVYNYAHLGNLRAYVFTDTLRRTLLWKGLD- 74 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 VT++ NITD+ DDK+ AR + SI I + T F ++ L Sbjct: 75 -VTHIINITDVGHLTSDADAGDDKMEAAARAQAKSI------WDIAAHYTDAFKRNIADL 127 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 +AP+ AT+++PQMI + I H YE + FD+SS+P+YG+ + + D Sbjct: 128 NIIAPSEWTVATDYVPQMIAFAEKIA-PAHCYELETGLYFDSSSVPDYGALAGGRDDAAH 186 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVF 231 R+ K+NP+DF +W++S P E W+SPWG+G PGWH+ECS MS LG F Sbjct: 187 --ARIDPVAGKRNPSDFAIWRKSPPGEQRQMEWDSPWGKGAPGWHLECSVMSEARLGHPF 244 Query: 232 DIHGGGLDLIFPHHENEIAQS---CCADRIE---KTANIWIHNGFLNLEGRKMSKSNGNF 285 DIH GG+D HH NEIAQ+ C + + A W+HN FL KMSKS G F Sbjct: 245 DIHTGGIDHREIHHPNEIAQNQAYCACNDAQPGFTGAQWWMHNNFLVDRQGKMSKSKGGF 304 Query: 286 ITINELLETKKFGGRSWPAPVI-RLAMLMTHYREPIDFTVQRLTEAEILLSK 336 T+ L++ P+ RL L HYR ++F+ + ++ A L + Sbjct: 305 TTLFSLIDAGVH-------PLAYRLLCLGAHYRSELEFSAESVSAALTRLKR 349 >gi|70953127|ref|XP_745684.1| cysteine--tRNA ligase [Plasmodium chabaudi chabaudi] gi|56526086|emb|CAH76958.1| cysteine--tRNA ligase, putative [Plasmodium chabaudi chabaudi] Length = 582 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/331 (38%), Positives = 192/331 (58%), Gaps = 27/331 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N+L EF + + I+ Y CGPTVYD AH+G+AR + FD++ R+L Y+ + Sbjct: 23 LMVNNSLTHSKVEFVPQEGNTIKWYACGPTVYDAAHLGHARTYVSFDIIRRILTNYF-KY 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDKII+R+ +E + + + K +F +D L L PT R Sbjct: 82 DVFMVINITDIDDKIIKRSEEEKVNF------TELARKWEYEFWEDMKNLNVLLPTSITR 135 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 + ++ ++I I+ II + +AY + + FD + PN+ ++R + K T++ Sbjct: 136 VSEYVNEIIKFIEKIIENKYAYVSSEGSVYFDIDAFKKNPNH-FYARMEPMSVKDETKIL 194 Query: 181 E--------KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 E +KKN DF LWK S P EP W+SPWG+GRPGWHIECS M+S+ LGKV D Sbjct: 195 EGEGDLGVISKNKKNSYDFALWKSSKPNEPSWDSPWGKGRPGWHIECSTMASNILGKVLD 254 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITI +L Sbjct: 255 IHSGGVDLRFPHHDNELAQSEAFFDHSQWVNYFLHSGHLHIEGLKMSKSLKNFITIKNML 314 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + + + IR+ L+ + ++++ Sbjct: 315 -------KKYTSNQIRILFLLNKWDSFMNYS 338 >gi|170694947|ref|ZP_02886096.1| Cysteine--tRNA ligase [Burkholderia graminis C4D1M] gi|170140045|gb|EDT08224.1| Cysteine--tRNA ligase [Burkholderia graminis C4D1M] Length = 255 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 108/244 (44%), Positives = 151/244 (61%), Gaps = 12/244 (4%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQAGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 Q--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFINALHEDADALGIARPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A++ ++ + YG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIETLEANGYAYQASDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK+S EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKQSKEGEPADTGWDSKYGRGRPGWHIECSAMGCALLGERFDIHGGGQ 233 Query: 239 DLIF 242 DL F Sbjct: 234 DLQF 237 >gi|312197580|ref|YP_004017641.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Frankia sp. EuI1c] gi|311228916|gb|ADP81771.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Frankia sp. EuI1c] Length = 426 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 190/362 (52%), Gaps = 33/362 (9%) Query: 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 ++ +YVCG T YD H+G+A + +D+L R LR + V +V N+TD+DD ++ERA Sbjct: 46 SVSLYVCGITPYDATHLGHAFTYVTYDLLNRALRDAGYQ--VRFVENVTDVDDPLLERAA 103 Query: 85 QEHPSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH 142 + D + + + + T+ F D T L L P H IP ++ ++ ++ Sbjct: 104 R--------DGVDWTEVAERETELFRTDMTALRVLPPDHYVGVVEAIPLIVEMVTELVAA 155 Query: 143 GHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKR 196 G Y + ++ F ++ P +G S R + ++ G P++ KK+P D LW+ Sbjct: 156 GATYTLDGDVYFSVAAAPRFGYVSGLDAAAMRALSAERGGD--PDRRGKKDPLDPPLWRA 213 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 P EP W SP+G GRPGWHIECSA++ YLG V D+ GGG DL+FPHHE A + A Sbjct: 214 EQPGEPSWPSPFGPGRPGWHIECSAIARRYLGDVIDVQGGGEDLVFPHHECSSAHAEVAT 273 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 A ++H G + L+G KMSKS GN ++ L R IRLA+L + Sbjct: 274 GHNPFARRYVHTGMVGLDGHKMSKSRGNLELVSRLR------ARGVAPAAIRLALLAHSH 327 Query: 317 REPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHK 370 R+ ++T L AE L +W P + G++ V +A+ +DL+T +A+ A+ + Sbjct: 328 RDDWEWTEGELAAAEARLGRWRAAVALPAGPDATGLL-AEVRAAVASDLDTPTALGAVDR 386 Query: 371 LA 372 A Sbjct: 387 WA 388 >gi|237785512|ref|YP_002906217.1| MshC ligase [Corynebacterium kroppenstedtii DSM 44385] gi|310947182|sp|C4LIL9|MSHC_CORK4 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|237758424|gb|ACR17674.1| MshC ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 520 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/462 (31%), Positives = 231/462 (50%), Gaps = 53/462 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++T R++T D + + YVCG T YD H+G+A + FDVL R L G + Sbjct: 24 LHMWDTASREVTPLTPSDEATV--YVCGITPYDSTHLGHAATYVTFDVLNRQL-LANGHR 80 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 V +V+N+TD+DD + ERA++ D + + + T F +D L + PT Sbjct: 81 -VNFVQNVTDVDDPLFERAQR--------DGVDWQELGEEQTDLFRQDMANLGVIPPTSY 131 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSR--RKIDEQKMG 176 A IP +I ++ ++ +G AY ++ ++ D ++ P +G SR EQ Sbjct: 132 IGAVEAIPDVIDMVSTLLDNGSAYVVDDPTYPDVYADRTATPQFGYESRYDEATMEQFFA 191 Query: 177 TRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 R P++ K++P D +LW+ P EP W+SP+GRGRPGWHIEC+A+++ YLG FD+ Sbjct: 192 ERGGDPDRPGKRDPLDSLLWRAERPGEPAWDSPFGRGRPGWHIECAAIAARYLGSHFDVQ 251 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DLIFPHHE A A +E+ A+ ++H G + L G KMSKS GN + ++ L Sbjct: 252 GGGEDLIFPHHEYSAAHVEAACGVERMADHYMHTGLIALGGVKMSKSLGNLVFVSRLCNA 311 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------PQTS 341 IRLA+ HYR+ +++ L A L+ W + Sbjct: 312 GT------DPSSIRLALYAGHYRDQRNWSDALLAAASRRLALWRTAVETVHAHNDADSEA 365 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLAR---ESTKNHDLLPIFNASAH---ILGIE 395 ++ ++D V AL DL+T +A+ + + A + K DL + +AH + + Sbjct: 366 RARRLVDD-VRQALATDLDTPAAVDLVDEWAGSIVDKEKIWDLPGVDGKNAHESLSVPVP 424 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 + +S+A Q ++ +L K S AD +L S Sbjct: 425 CAAPATDDKLSVA-----QGKITILDDGKDSEADAKSVELAS 461 >gi|296282436|ref|ZP_06860434.1| cysteinyl-tRNA synthetase [Citromicrobium bathyomarinum JL354] Length = 483 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 157/481 (32%), Positives = 234/481 (48%), Gaps = 54/481 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K++N+L R++ F + R+Y CGPTVY++ HIGN R + DVL R L + G Sbjct: 6 QLKLFNSLNRQLEPFVPVHEGEARVYTCGPTVYNYPHIGNMRAYVFADVLGRTLSWR-GY 64 Query: 64 KCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 K +T++ NITD+ DD + E + +I I TQ F D L P Sbjct: 65 K-LTHIINITDVGHLTDDADAGEDKLEKMAAKQKQSIWDIAEHYTQAFKADVAALNIREP 123 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 AT++I QMI + I H Y+ + + FD S++ +YG +R +E + R+ Sbjct: 124 AEWSVATDYIEQMIDFAKQIEAK-HCYQLESGLYFDVSTVEDYGRLARAVTEEGE--GRI 180 Query: 180 PEKYHKKNPADFILWKRSTP------MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 K+N ADF +W R+TP ME W+SPWGRG PGWH+ECS M LG FDI Sbjct: 181 DTVEGKRNAADFAIW-RTTPEGETRQME--WDSPWGRGAPGWHLECSVMGGKLLGFPFDI 237 Query: 234 HGGGLDLIFPHHENEIAQS---C-CA---DRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 H GG+D HH NEIAQ+ C C D A IW+HN FL KMSKS+G F+ Sbjct: 238 HTGGIDHREIHHPNEIAQNQAYCGCGGLDDAAHSGAKIWMHNNFLVERSGKMSKSSGEFL 297 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA-----EILLSKWPQTS 341 + L++ + + R+ L HYR ++F+ + L A ++++ P Sbjct: 298 RLQLLID------KGYHPLAYRMMCLQAHYRSELEFSWEGLGAALTRLKRMVMAVQPLRE 351 Query: 342 TSKGIID-----PAVL---SALYNDLNTVSAIQALH-KLARESTKNHDLLPIFNASAHIL 392 D PA+ A+ +DLNT A+ AL LA + + +L Sbjct: 352 VESAATDHPKFAPALAKFQDAMADDLNTAIALTALEDALATKKVDAGIKRAVVERMDAVL 411 Query: 393 G---IEVCKEHLN---KNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 G +++ + L K+ I IE ++ R K F+++D IR +L +KG + Sbjct: 412 GLGLLDLARTDLRLRPKDAIITEAEIEDALERRKAARAEKDFATSDAIRDELAAKGVEVM 471 Query: 444 D 444 D Sbjct: 472 D 472 >gi|26344287|dbj|BAC35800.1| unnamed protein product [Mus musculus] gi|148690123|gb|EDL22070.1| mCG11180, isoform CRA_f [Mus musculus] Length = 392 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 170/301 (56%), Gaps = 19/301 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCN 96 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +ITD+DDKII+RA + +N + + S ++F +D L L PT R Sbjct: 97 -VVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYLR 149 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 150 VTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPGD 205 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ +DF LWK + P E W SPWG GRPGWHIECS M+S G DIH GG+DL F Sbjct: 206 SDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMASEVFGSHLDIHTGGIDLAF 265 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQS + ++ N ++H+G L+++G KMSKS N+ITI + + GR Sbjct: 266 PHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTEEKMSKSLKNYITIKDC----RLSGR 321 Query: 301 S 301 S Sbjct: 322 S 322 >gi|255084145|ref|XP_002508647.1| hypothetical protein MICPUN_113739 [Micromonas sp. RCC299] gi|226523924|gb|ACO69905.1| hypothetical protein MICPUN_113739 [Micromonas sp. RCC299] Length = 744 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 190/384 (49%), Gaps = 74/384 (19%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 ++ N+ + F +D + + Y+CGPTVYD AH+G+AR + FDV+ R++ Y+ Sbjct: 43 RLLNSFTKTKVPFVPLDGNRVGWYICGPTVYDSAHMGHARNYVNFDVIRRVMTDYF-RYD 101 Query: 66 VTYVRNITDIDDKIIERA--RQEHPSIPINDAI--------------------------- 96 V ++ N+TDIDDKI+ RA R+ I +A+ Sbjct: 102 VRFIMNVTDIDDKIVMRAHLRRSEAMIAAAEAVGGLDALIAPLKALLASGEKNLGEQEAL 161 Query: 97 ------SIITSKNTQ---------------------QFVKDTTRLACLAPTHQPRATNHI 129 +I+ T+ +F++D + P R + + Sbjct: 162 TASLCAAIVAKDPTKVADPDWTVQDGYLALAHAFEAEFMEDMRLMGVARPDALTRVSEYT 221 Query: 130 PQMIYLIQNIILHGHAYEANNEIIFDTSSI---PN--YGSFSRRKIDEQKM-----GTRV 179 +++ IQ II G+AYE+N + FD + PN Y ++ + ++ G Sbjct: 222 EKIVQYIQTIIDRGYAYESNGSVYFDVPTFEQSPNHKYAKLNKEALKNVELAMDGEGALA 281 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K+ DF+LWK S P EP W SPWG GRPGWHIECSAM S LG+ DI+GGG+D Sbjct: 282 ADASEKRAENDFVLWKASKPGEPRWPSPWGLGRPGWHIECSAMCSDILGEAVDINGGGID 341 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHEN++AQS I++ N ++H G L+++G KMSKS NFITI L Sbjct: 342 LNFPHHENQLAQSEAHYDIKQWVNYFVHTGHLHIDGLKMSKSLKNFITIRAAL------- 394 Query: 300 RSWPAPVIRLAMLMTHYREPIDFT 323 + + A IR L+ + +P+D T Sbjct: 395 KMYTARQIRFLFLLHQWSDPMDLT 418 >gi|68072763|ref|XP_678295.1| cysteine--tRNA ligase [Plasmodium berghei strain ANKA] gi|56498716|emb|CAH94957.1| cysteine--tRNA ligase, putative [Plasmodium berghei] Length = 582 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 192/331 (58%), Gaps = 27/331 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N+L EF + + I+ Y CGPTVYD AH+G+AR + FD++ R+L Y+ + Sbjct: 23 LMVNNSLTHSKVEFVPQEGNTIKWYACGPTVYDAAHLGHARTYVSFDIIRRILTNYF-KY 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDKII+R+ +E + + + K +F +D L L P+ R Sbjct: 82 DVFMVINITDIDDKIIKRSEEEKVNF------TELARKWEYEFWEDMKSLNVLLPSSITR 135 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 + ++ ++I I+ II + +AY + + FD + PN+ ++R + K T++ Sbjct: 136 VSEYVNEIIKFIEKIIENKYAYVSSEGSVYFDIDAFKKNPNH-FYARMEPMSVKDETKIL 194 Query: 181 E--------KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 E +KKN DF LWK S P EP W+SPWG+GRPGWHIECS M+S+ LGKV D Sbjct: 195 EGEGDLGVISKNKKNSYDFALWKSSKPNEPSWDSPWGKGRPGWHIECSTMASNILGKVLD 254 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITI +L Sbjct: 255 IHSGGVDLRFPHHDNELAQSEAFFDHSQWVNYFLHSGHLHIEGLKMSKSLKNFITIKNML 314 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + + + IR+ L+ + ++++ Sbjct: 315 -------KKYTSNQIRILFLLNKWDSFMNYS 338 >gi|258597035|ref|XP_001347434.2| cysteinyl-tRNA synthetase, putative [Plasmodium falciparum 3D7] gi|254922413|gb|AAN35347.2| cysteinyl-tRNA synthetase, putative [Plasmodium falciparum 3D7] Length = 677 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/328 (38%), Positives = 179/328 (54%), Gaps = 25/328 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + N+L EF + + I+ Y CGPTVYD AH+G+AR + FD++ R+L Y+ + V Sbjct: 109 VNNSLTHSKVEFIPQEGNKIKWYACGPTVYDAAHLGHARTYVSFDIIRRILVNYF-KYDV 167 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 V NITDIDDKII+R+ +E + + K +F +D L L PT R + Sbjct: 168 FMVINITDIDDKIIKRSVEEKI------GFTELARKWEYEFWEDMKSLNVLLPTAITRVS 221 Query: 127 NHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPN-----YGSFSRRKI-DEQKM---- 175 ++ ++ I+ II + +AY + FD Y + DE K+ Sbjct: 222 EYVGDIVKYIEKIIENKYAYVSEEGSVYFDIDEFKKSEKHFYARMEPLSVKDENKILEGE 281 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G KKN DF LWK S P EP W+SPWG+GRPGWHIECS M+S+ LG V DIH Sbjct: 282 GDLGVISKKKKNAYDFALWKSSKPNEPHWDSPWGKGRPGWHIECSTMASNILGDVLDIHS 341 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITI +L Sbjct: 342 GGIDLRFPHHDNELAQSEAFFDHSQWVNYFLHSGHLHIEGLKMSKSLKNFITIKNML--- 398 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + + IR+ L+ + ++++ Sbjct: 399 ----TKYTSNQIRILFLLNKWDNFMNYS 422 >gi|301606905|ref|XP_002933053.1| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 572 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/330 (39%), Positives = 184/330 (55%), Gaps = 22/330 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN+L R+ DP+ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 55 IKVYNSLTRRKDPLILADPTVATWYSCGPTVYDHAHLGHACSYVRFDIIRRILLKVFGID 114 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +TDIDDKII+RA++ +N + + Q F +D T L L PT R Sbjct: 115 -TVVVMVVTDIDDKIIKRAKE------LNISPVALARTYEQDFKQDMTALKVLPPTVYMR 167 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 T +IPQ+I I++II +G+AY + + FD SI YG F+ D Sbjct: 168 VTENIPQIISFIEHIIANGYAYATSQGNVYFDVQSIGERYGKFNDSFSDTASESA----S 223 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W SPWG+GRPGWHIECS ++S GK DIH GG+DL F Sbjct: 224 QDKRHIRDFALWKTSKPEEPYWASPWGKGRPGWHIECSTIASSVFGKHLDIHTGGIDLAF 283 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQ + + N ++H G L+L+G KMSKS N++T+ E L + Sbjct: 284 PHHENEIAQCEAYHQSTQWGNYFLHTGHLHLKGNEEKMSKSLRNYVTVKEFL-------K 336 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 S+ R+ L + Y+ ++++ + +A Sbjct: 337 SFSPDQFRMFCLRSKYKSAVEYSNGSMHDA 366 >gi|219685228|ref|ZP_03540048.1| cysteine--tRNA ligase [Borrelia garinii Far04] gi|219673324|gb|EED30343.1| cysteine--tRNA ligase [Borrelia garinii Far04] Length = 480 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 159/494 (32%), Positives = 239/494 (48%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E +N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELANF--ANVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F KD +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISKFFTEAFFKDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK-IDEQ 173 + P A+ HIP MI +++ + Y +N + FDTS +YG + ID+ Sbjct: 113 NVVYPDKVLIASKHIPNMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS+GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSHGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP 349 L E +++ R L +HYR + F+ L ++I + S +DP Sbjct: 292 LEE------QNFSPLDFRYLCLTSHYRNQLKFSFNNLKASKIARENMINRLSYFYASLDP 345 Query: 350 AVLSAL---------------YN--------DLNTVSAIQALHKLARES----TKNHDLL 382 A L+ L Y+ DLN + L ++ + L Sbjct: 346 ADLNMLNKDLKNFGFSAEKEYYDSFVEKVSFDLNVSKGLALLWEVIKSENLGFVSKLKLA 405 Query: 383 PIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 IF+ + L E+ K+ N N+ + ++ L++ER I K F AD IR KG Sbjct: 406 FIFDEIMSLNLREEILKKSENHNVVVDENMKTLIEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLIDTKEGTKVKR 479 >gi|307330786|ref|ZP_07609922.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces violaceusniger Tu 4113] gi|306883589|gb|EFN14639.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces violaceusniger Tu 4113] Length = 409 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 30/365 (8%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TD+DD ++ERA++ Sbjct: 39 RIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPLLERAQRN 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 D + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 97 ------GDDWTALAERETALFREDMTALRMLPPRHYIGAVESIPGIVPLVERLRDLGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E +I F S P++GS SR R + ++ G PE+ KKNP D +LW + Sbjct: 151 ELEGDIYFSVESDPSFGSVSRLDAEAMRLLSAERGGD--PERPGKKNPLDPMLWMAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ G GRPGWHIEC A++ +LG FD+ GGG DL FPHHE + + Sbjct: 209 EPSWDGGSLGSGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGASHAQVLTGER 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L+G KMSKS GN + ++ L PA IRLA+L HYR Sbjct: 269 PFAKTYVHAGMVALDGEKMSKSKGNLVFVSALRRDGVD-----PA-AIRLALLAHHYRSD 322 Query: 320 IDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR 373 ++T L EAE L +W P ++ +++ + AL NDL++ +A+ A+ + A Sbjct: 323 WEWTDGVLREAEERLGRWRAAVSRPDGPSAAALVE-EIREALANDLDSPAALAAVDRWAA 381 Query: 374 ESTKN 378 T Sbjct: 382 AQTAT 386 >gi|82541403|ref|XP_724944.1| cysteinyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL] gi|23479772|gb|EAA16509.1| cysteinyl-tRNA synthetase [Plasmodium yoelii yoelii] Length = 579 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 191/331 (57%), Gaps = 27/331 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N+L EF + + I+ Y CGPTVYD AH+G+AR + FD++ R+L Y+ + Sbjct: 23 LMVNNSLTHSKVEFVPQEGNTIKWYACGPTVYDAAHLGHARTYVSFDIIRRILTNYF-KY 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDKII+R+ +E + + + K +F +D L L P+ R Sbjct: 82 DVFMVINITDIDDKIIKRSEEEKVNF------TELARKWEYEFWEDMKSLNVLLPSSITR 135 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 + ++ ++I I+ II + +AY + + FD + PN+ ++R + K T++ Sbjct: 136 VSEYVNEIIKFIEKIIENKYAYVSSEGSVYFDIDAFKKNPNH-FYARMEPMSVKDETKIL 194 Query: 181 E--------KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 E +KKN DF LWK S P EP W+SPWG+GRPGWHIECS M+S+ LG V D Sbjct: 195 EGEGDLGVISKNKKNSYDFALWKSSKPNEPSWDSPWGKGRPGWHIECSTMASNILGNVLD 254 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITI +L Sbjct: 255 IHSGGIDLRFPHHDNELAQSEAFFDHSQWVNYFLHSGHLHIEGLKMSKSLKNFITIKSML 314 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + + A IR+ L+ + ++++ Sbjct: 315 -------KKYTANQIRILFLLNKWDSFMNYS 338 >gi|68536033|ref|YP_250738.1| cysteinyl-tRNA synthetase [Corynebacterium jeikeium K411] gi|123761878|sp|Q4JVN7|MSHC2_CORJK RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 2; Short=L-Cys:GlcN-Ins ligase 2; AltName: Full=Mycothiol ligase 2; Short=MSH ligase 2 gi|68263632|emb|CAI37120.1| cysS1 [Corynebacterium jeikeium K411] Length = 415 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 203/389 (52%), Gaps = 34/389 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+T + + + I + MYVCG T YD H+G+A + FD+++R LR Sbjct: 18 QLRLYDTADDVVKPVE-IPAGEVGMYVCGITPYDSTHLGHAATYLTFDLIHRYLRA--AG 74 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+NITD+DD + ERA ++ + D + + F D LA + P Sbjct: 75 HGVHYVQNITDVDDPLFERAERD--GVDWQD----LGTSQIDLFRSDMEDLAVIPPRDYI 128 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 A I ++I ++ ++ G AY+ + I D + +P +G SR DEQ+M Sbjct: 129 GAMESIDEVIEMVAKLLEVGAAYQLEGDEYPDIYADYTFLPQFGYESR--YDEQQMAEFF 186 Query: 180 ------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 PE+ K++P D +LW+ EP W+SP+G GRPGWHIECSA++ + LG F I Sbjct: 187 AERGGDPERPGKRHPMDALLWRAHREGEPKWDSPFGPGRPGWHIECSAIAVNRLGAPFAI 246 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE + A +++ A+ ++H G + L+G KMSKS GN + ++ L Sbjct: 247 QGGGSDLRFPHHEFSATHAEAAHGVDRMAHHYVHTGMIGLDGTKMSKSLGNLVFVSRLTA 306 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDPA-- 350 PA IRL + HYR+ D+T L AE L+ W +T +D A Sbjct: 307 AGHE-----PA-AIRLGVYAGHYRQDRDWTNDVLAHAEHRLASWRAALATGSTTLDEARE 360 Query: 351 ----VLSALYNDLNTVSAIQALHKLARES 375 V L NDL+T +A++AL A ++ Sbjct: 361 LVATVRGHLANDLDTAAALEALDDWAADT 389 >gi|82236042|sp|Q6DJ95|SYCM_XENTR RecName: Full=Probable cysteinyl-tRNA synthetase, mitochondrial; AltName: Full=Cysteine--tRNA ligase; Short=CysRS; Flags: Precursor gi|49522960|gb|AAH75287.1| albumin [Xenopus (Silurana) tropicalis] Length = 572 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/330 (39%), Positives = 184/330 (55%), Gaps = 22/330 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN+L R+ DP+ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 55 IKVYNSLTRRKDPLILADPTVATWYSCGPTVYDHAHLGHACSYVRFDIIRRILLKVFGID 114 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +TDIDDKII+RA++ +N + + Q F +D T L L PT R Sbjct: 115 -TVVVMVVTDIDDKIIKRAKE------LNISPVALARTYEQDFKQDMTALKVLPPTVYMR 167 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 T +IPQ+I I++II +G+AY + + FD SI YG F+ D Sbjct: 168 VTENIPQIISFIEHIIANGYAYATSQGNVYFDVQSIGERYGKFNDSFSDTASESA----S 223 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W SPWG+GRPGWHIECS ++S GK DIH GG+DL F Sbjct: 224 QDKRHIRDFALWKTSKPEEPYWASPWGKGRPGWHIECSTIASSVFGKHLDIHTGGIDLAF 283 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGR 300 PHHENEIAQ + + N ++H G L+L+G KMSKS N++T+ E L + Sbjct: 284 PHHENEIAQCEAYHQSTQWGNYFLHTGHLHLKGNEEKMSKSLRNYLTVKEFL-------K 336 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 S+ R+ L + Y+ ++++ + +A Sbjct: 337 SFSPDQFRMFCLRSKYKSAVEYSNGSMHDA 366 >gi|300855265|ref|YP_003780249.1| cysteinyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] gi|300435380|gb|ADK15147.1| cysteinyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] Length = 471 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 232/472 (49%), Gaps = 47/472 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNT+ RK EF ++ + +Y CGPTVY++AHIGN R I D+L + Y G V Sbjct: 5 VYNTMSRKKEEFVPVNEGKVGIYTCGPTVYNYAHIGNLRTYIFEDILKKAFEY--GHYKV 62 Query: 67 TYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 +V NITD+ +DK+ A +E N + I F +D +L Sbjct: 63 KHVMNITDVGHLQSDADTGEDKMQIGAERE------NKTVWEIAKFYENAFFEDCHKLNI 116 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 P +AT+HI MI +I+ + G+ Y + + ++ +Y + ++E + G Sbjct: 117 RKPDIVCKATDHIQDMIDIIKTLEKKGYTYTSKGNVYYEIDKFKDYNKLANLSMEELEAG 176 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 R+ +KKNP DF+LW ++ + W SPWG+G PGWHIECSAMS YLG DI Sbjct: 177 ARIDVDENKKNPLDFVLWFTNSKFKDQIMQWNSPWGKGFPGWHIECSAMSIKYLGDRIDI 236 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 H GG+D I HH NEIA+S A K N W+H FL L KMSKS G+F+T+++ +E Sbjct: 237 HCGGVDHIPVHHTNEIAES-EAVLGHKWVNYWMHGEFLVLSDGKMSKSKGDFLTLSK-IE 294 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------S 341 + F + R L + YR+ + F+ L +A++ K + Sbjct: 295 KEGFSPMDY-----RYFCLQSRYRKQLMFSFDALRQAQLAYKKLKEKVADIVSNVKENER 349 Query: 342 TSKGIIDP---AVLSALYNDLNTVSAIQALHKLAREST-KNHDLLPIFNASAHILGIEVC 397 K +++ + +DLN +A L ++ +++ N + + + + +++ Sbjct: 350 ADKELVNKYKNKFQEKISDDLNIPNAFTVLFEVIKDNELTNKEKSLLIESFDTVFSLDLL 409 Query: 398 KE---HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 K +L K S I++L+ ER K + AD IR +L+S G + D K Sbjct: 410 KSNNHNLEKLDSEDIKRLICERNDARNHKDWHKADVIRDELKSMGIDIIDSK 461 >gi|68063221|ref|XP_673620.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56491605|emb|CAI02493.1| hypothetical protein PB300790.00.0 [Plasmodium berghei] Length = 386 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 20/301 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N+L EF + + I+ Y CGPTVYD AH+G+AR + FD++ R+L Y+ Sbjct: 23 LMVNNSLTHSKVEFVPQEGNTIKWYACGPTVYDAAHLGHARTYVSFDIIRRILTNYFKYD 82 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NITDIDDKII+R+ +E + + + K +F +D L L P+ R Sbjct: 83 -VFMVINITDIDDKIIKRSEEEKVNF------TELARKWEYEFWEDMKSLNVLLPSSITR 135 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 + ++ ++I I+ II + +AY + + FD + PN+ ++R + K T++ Sbjct: 136 VSEYVNEIIKFIEKIIENKYAYVSSEGSVYFDIDAFKKNPNH-FYARMEPMSVKDETKIL 194 Query: 181 E--------KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 E +KKN DF LWK S P EP W+SPWG+GRPGWHIECS M+S+ LGKV D Sbjct: 195 EGEGDLGVISKNKKNSYDFALWKSSKPNEPSWDSPWGKGRPGWHIECSTMASNILGKVLD 254 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IH GG+DL FPHH+NE+AQS + N ++H+G L++EG KMSKS NFITIN++ Sbjct: 255 IHSGGVDLRFPHHDNELAQSEAFFDHSQWVNYFLHSGHLHIEGLKMSKSLKNFITINDMF 314 Query: 293 E 293 + Sbjct: 315 K 315 >gi|301108884|ref|XP_002903523.1| cysteinyl-tRNA synthetase, putative [Phytophthora infestans T30-4] gi|262097247|gb|EEY55299.1| cysteinyl-tRNA synthetase, putative [Phytophthora infestans T30-4] Length = 678 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 191/375 (50%), Gaps = 48/375 (12%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 ++ P+ ++ Y CGPTVYD AH+G+AR + D+L R+ G V V +TD+DDKI Sbjct: 45 SVTPNILKWYACGPTVYDKAHLGHARAYVSQDILRRVAERTGGYN-VQLVMGVTDVDDKI 103 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 I+RA+++ N + + + QQF D RL PT R + H+P+++ I+ I Sbjct: 104 IKRAKEQ------NVSFHTLAWEQEQQFFADMARLYVKPPTAITRVSEHLPEIVKYIEEI 157 Query: 140 ILHGHAYEA--NNEIIFDTSSIPN-YGSFSRRKI---DEQKMGTRVPEKYH--------- 184 G AY+A + + F+T + + YG R+ DEQ + T Sbjct: 158 QHKGFAYQAVDGSGVYFNTRQLGDKYGKLDPRRQTQRDEQ-LQTEAEAAVEESDVAEEEE 216 Query: 185 --KKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P EP W SPWG GRPGWHIECSAM+ H LG D+H GG+DL Sbjct: 217 KVKRDPRDFALWKAAKEPDEPAWPSPWGLGRPGWHIECSAMTHHVLGDRLDVHTGGVDLR 276 Query: 242 FPHHENEIAQ--------SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 FPHH NEIAQ C D EK N ++H G L + GRKMSKS NFI++ + L Sbjct: 277 FPHHNNEIAQCEAHNHGPQCGHD--EKWCNHFVHFGHLYIRGRKMSKSLKNFISVRDFL- 333 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 A RL L YR + ++ R+ +AE + +G V Sbjct: 334 -----AEGHTADHFRLFCLQFKYRASLVYSEDRVRDAEATAGRL------RGFFRSVVAY 382 Query: 354 ALYNDLNTVSAIQAL 368 +D+++ S + L Sbjct: 383 GSGHDMSSSSHTETL 397 >gi|222478729|ref|YP_002564966.1| cysteinyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239] gi|222451631|gb|ACM55896.1| cysteinyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239] Length = 497 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 165/309 (53%), Gaps = 29/309 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + + +TL + EF A ++ +YVCG TV D H+G+AR DVL+R L + + Sbjct: 2 SLVVTDTLADERVEFTA--DGDVTLYVCGLTVSDDPHLGHARLWFHADVLHRWLDHVGYD 59 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR-LACLAPTHQ 122 V +V N+TD+++KI R + D T+ D R L L Sbjct: 60 --VRHVENVTDVNEKITARIGERDAWTDERDVAETFTATTF-----DAMRGLNLLRAEVY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+P+++ L++ +I G+AYE+N + FD ++ +YG S + + + + E+ Sbjct: 113 PRVTEHVPEIVDLVETLIEKGYAYESNGSVYFDVTAFDDYGKLSNQNVQDLEAQGEPDER 172 Query: 183 YHKKNPADFILWKRS------------------TPMEPGWESPWGRGRPGWHIECSAMSS 224 K+NP+DF LWK TP W SPW GRPGWH+ECSAMS+ Sbjct: 173 SEKRNPSDFALWKADGVSETAAREHAKHDHGDETPSGEIWNSPWSEGRPGWHVECSAMST 232 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +LG DIH GG DL+FPHHENEIAQS A E A W+H G L +EG KMS S GN Sbjct: 233 THLGDTLDIHMGGRDLVFPHHENEIAQSEAA-TGETFARHWLHVGLLAMEGEKMSSSIGN 291 Query: 285 FITINELLE 293 F T+ + L+ Sbjct: 292 FWTVPDALD 300 >gi|294507027|ref|YP_003571085.1| Cysteinyl-tRNA synthetase [Salinibacter ruber M8] gi|294343355|emb|CBH24133.1| Cysteinyl-tRNA synthetase [Salinibacter ruber M8] Length = 569 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 162/532 (30%), Positives = 240/532 (45%), Gaps = 101/532 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++YNTL + + I+ ++R Y CGPTVY +AHIGN R + D++ R + Sbjct: 59 FRLYNTLTHETEPVEPIEEEHLRFYSCGPTVYMYAHIGNFRSFLTADLIRRTAEAIGWD- 117 Query: 65 CVTYVRNITDI-----DDKI-------IERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 VT V NITD+ DD + ++RA + N I + T+ F++D Sbjct: 118 -VTNVSNITDVGHLTQDDLVDPGGEDKMQRALEREGERFAN--IYDLARHYTEAFLEDWG 174 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 L P +PRAT H+ + + ++ HAY + + F S+ +YG S + Sbjct: 175 ALNLREPEVRPRATEHVTDQLEAVIELVEKEHAYTTDQGVYFSVESVEDYGHLSGNTEAQ 234 Query: 173 QKMGTR--VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 Q T V E K++P DF LWK W SPWG G PGWHIECS M YLG Sbjct: 235 QLQATERDVVEDPDKRDPRDFALWKHDPQHLMHWHSPWGWGYPGWHIECSVMGMQYLGDR 294 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+H GG DLIFPHHE EIAQ+ + N W+H FL +EG KMSKS GNF + + Sbjct: 295 FDLHTGGEDLIFPHHECEIAQNQSL-AGHQVVNYWVHTRFLQVEGEKMSKSKGNFYIVRD 353 Query: 291 LLETKKFGGRSWPAP------------------VIRLAMLMTHYREPIDFTVQRLTEAEI 332 L+ P P +R A++ YR+P +FT+ L A Sbjct: 354 LIA---------PGPDDDHVPDSVREQEGVDPLALRYALMQGQYRKPFNFTLDTLHTAAR 404 Query: 333 LLSKWPQTSTSK-------------------GIIDPAVLSALYNDLNT----------VS 363 + ++ Q + + G I L A+ +DLNT V Sbjct: 405 HVRRY-QDAAERVDAALAADADGPDELGGRLGPIYDRTLEAMCDDLNTPAATAAALDGVK 463 Query: 364 AIQALHKLARESTKN-HDLLPIFNASAHILGIEVCKEH--------------LNKNISIA 408 AI+ +L + ++ + L NA +LG+ V EH ++S + Sbjct: 464 AIEQTDRLNGATARSARNWLDRTNA---LLGV-VEPEHEADQRTDAGSENGLAPTHLSDS 519 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 I+ L+++R +++ AD IR LE+ G + D PD T W+++ Sbjct: 520 IDTLLEDREAARADGEYARADAIRDTLEALGIEVMD--TPDG----TEWERQ 565 >gi|326386996|ref|ZP_08208606.1| cysteinyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370] gi|326208177|gb|EGD58984.1| cysteinyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 182/348 (52%), Gaps = 25/348 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + ++N+L R+ FQ + P R+Y CGPTVY++ HIGN R + DVL R L Y G Sbjct: 5 RPLVLFNSLTRQSEPFQPVHPGEARVYSCGPTVYNYPHIGNMRAYVFADVLGRTLTYK-G 63 Query: 63 EKCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 K +T+V NITD+ DD + E + +I I TQ + D L Sbjct: 64 YK-LTHVINITDVGHLTDDADDGEDKMEKAAAQGAQSIWDIARHYTQAYWADIAALNIRQ 122 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P AT++IPQMI + I H YE + FD S+ +YG +R +E + R Sbjct: 123 PAQWSIATDYIPQMIAFAEKIA-DKHCYELPTGLYFDVGSVADYGRLARATTEEGE--GR 179 Query: 179 VPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + + K++ ADF +W+++ P E W+SPWGRG PGWH+ECS MS LG FDIH Sbjct: 180 IEDVEGKRHKADFAIWRKTPPGEKRQMEWDSPWGRGAPGWHLECSVMSGALLGFPFDIHT 239 Query: 236 GGLDLIFPHHENEIAQSC---CADRIEKTAN----IWIHNGFLNLEGRKMSKSNGNFITI 288 GG+D HH NEIAQ+ CA + AN +W+HN FL KMSKS+G F+ + Sbjct: 240 GGIDHREIHHPNEIAQNQAFRCAGSLTDPANSGARMWLHNNFLVERSGKMSKSSGEFLRL 299 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 L++ R + R+ L HYR ++F+ + L A L + Sbjct: 300 QLLID------RGYHPLAYRMMCLQAHYRSELEFSWEGLGAALTRLKR 341 >gi|303236112|ref|ZP_07322714.1| putative cysteine--tRNA ligase [Prevotella disiens FB035-09AN] gi|302483694|gb|EFL46687.1| putative cysteine--tRNA ligase [Prevotella disiens FB035-09AN] Length = 310 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/290 (42%), Positives = 165/290 (56%), Gaps = 24/290 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL R+ FQ I N+ MYVCGPTVY H+G+ARP I FD+L+R L++ G Sbjct: 2 QNLVIYNTLHRQKERFQPIAAPNVGMYVCGPTVYGDPHLGHARPSITFDILFRYLQHI-G 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 K V YVRNITD+ DDKI ++AR E P+ I T ++ Sbjct: 61 YK-VRYVRNITDVGHLEHDADEGDDKIEKKARLEQLE-PME-----IAQFYTNRYHNAMR 113 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRK 169 L L+P+ +P AT HI + L++ I+ +G+AYE+N I FD + YG S R Sbjct: 114 MLNVLSPSIEPHATGHIIEQEELVKEIMANGYAYESNGSIYFDVTKYDKDHKYGRLSGRN 173 Query: 170 IDEQKMGTR-VPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYL 227 + + +R + K+N DF LWKR+ P W SPW G PGWH EC+AM YL Sbjct: 174 LTDMINNSRELAGVSEKRNQVDFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRKYL 233 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRK 277 G FDIHGGG+DL+FPHHE EIAQ+ A + + W+HN + + G+K Sbjct: 234 GNHFDIHGGGMDLVFPHHECEIAQA-VASQGDDMVKYWMHNNMITINGKK 282 >gi|297198535|ref|ZP_06915932.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sviceus ATCC 29083] gi|197716199|gb|EDY60233.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sviceus ATCC 29083] Length = 409 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 209/386 (54%), Gaps = 38/386 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + ++DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGLV---SLDPGPVARLYVCGITPYDATHMGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI--SIITSKNTQQFVKDTTRLACLAP 119 ++ V YV+N+TDIDD ++ERA + D+I + + K T F +D T L L P Sbjct: 72 TKRQVHYVQNVTDIDDPLLERAER--------DSIDWAALAEKETVLFREDMTALRMLPP 123 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQ 173 H A IP ++ L++ + G AYE + F S PN+G S R + + Sbjct: 124 RHYIGAVEAIPGIVPLVERLRDAGAAYELEGDTYFSVESDPNFGKVSNLDAAAMRLLSAE 183 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G P++ KKNP D +LW + EP W+ + GRGRPGWHIEC A++ +LG FD Sbjct: 184 RGGD--PDRPGKKNPLDPMLWMAAREGEPSWDGASLGRGRPGWHIECVAIALDHLGMTFD 241 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 + GGG DL FPHHE + + A ++H G + L+G KMSKS GN + +++L Sbjct: 242 VQGGGSDLAFPHHEMGASHAQVLTGEFPMAKAYVHAGMVALDGEKMSKSKGNLVFVSQL- 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGI 346 ++ G PA IRLA+L HYR ++T Q L +A L +W P +++ + Sbjct: 301 --RREGVD--PA-AIRLALLAHHYRADWEWTDQVLQDAVDRLGRWRAAVSRPDGPSAEEL 355 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLA 372 ++ + AL NDL+ +A+ A+ + A Sbjct: 356 VE-EIREALANDLDAPTALTAVDRWA 380 >gi|213965593|ref|ZP_03393787.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium amycolatum SK46] gi|213951752|gb|EEB63140.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium amycolatum SK46] Length = 451 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 208/379 (54%), Gaps = 40/379 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T ++K+++ +A MYVCG T YD H+G+A + FD++YR L Sbjct: 42 LRLYDTADQKVSQVEA--GPEATMYVCGITPYDATHLGHAATYLTFDLIYRQL--LDNGH 97 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+NITD+DD + ERA ++ D + TS+ F D L+ + P Sbjct: 98 SVHYVQNITDVDDPLFERAERDGV-----DWRELGTSQ-IDLFRSDMENLSVIPPRDYIG 151 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYG---SFSRRKIDE---QK 174 A + +++ +++ ++ +G AY+ N+ + F S+ N+G ++S ++ E ++ Sbjct: 152 AMESVDEVVDMVEKLLENGSAYQLTNDEYPDVYFRKSATENFGYESNYSAEQMAEFFAER 211 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P++ K+NP D ++W+ + P EP WE+P+G GRPGWHIECSA++++ LGK FDI Sbjct: 212 GGD--PDRPGKENPLDALVWRAARPGEPSWEAPFGAGRPGWHIECSAIATNRLGKSFDIQ 269 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE A + A + A ++H G + L+G KMSKS GN + +++L+ Sbjct: 270 GGGSDLAFPHHEFSAAHAEAATGCARMARHYVHAGMIALDGVKMSKSLGNLVFVSKLVAA 329 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 IR+ + +HYR D++ + L A+ L W +T+T + + Sbjct: 330 GV------DPSAIRIGVFASHYRSDRDWSDEVLEAAKARLEAWRAACESTKTATDEKAVR 383 Query: 349 PA------VLSALYNDLNT 361 A V ++L NDL+T Sbjct: 384 EAAALVADVRASLANDLDT 402 >gi|219684162|ref|ZP_03539106.1| cysteinyl-tRNA synthetase [Borrelia garinii PBr] gi|219672151|gb|EED29204.1| cysteinyl-tRNA synthetase [Borrelia garinii PBr] Length = 480 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 158/494 (31%), Positives = 238/494 (48%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E +N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKDFSELANF--ANVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F KD +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISKFFTEAFFKDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK-IDEQ 173 + P A+ HIP MI +++ + Y +N + FDTS +YG + ID+ Sbjct: 113 NVVYPDKVLIASKHIPNMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP 349 L E +++ R L +HYR + F+ L ++I + S +DP Sbjct: 292 LEE------QNFSPLDFRYLCLTSHYRNQLKFSFNNLKASKIARENMINRLSYFYASLDP 345 Query: 350 AVLSAL---------------YN--------DLNTVSAIQALHKLARES----TKNHDLL 382 A L+ L Y+ DLN + L ++ + L Sbjct: 346 ADLNMLNKDLKNFGFSAEKEYYDSFVEKVSFDLNVSKGLALLWEVIKSENLGFVSKLRLA 405 Query: 383 PIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 IF+ + L E+ K+ N N+ + ++ L++ER I K F AD IR KG Sbjct: 406 FIFDEIMSLNLREEILKKSENHNVVVDENMKTLIEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLIDTKEGTKVKR 479 >gi|195380357|ref|XP_002048937.1| GJ21318 [Drosophila virilis] gi|194143734|gb|EDW60130.1| GJ21318 [Drosophila virilis] Length = 566 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 187/338 (55%), Gaps = 24/338 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYN R +P + Y CGPTVYD H+G+A + D++ R+LR ++ Sbjct: 60 IRIYNHSVRGKVPLVLRNPQMVTWYTCGPTVYDKTHVGHASTYVKVDIIQRILRDHFKYN 119 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT + NITD+DDKII+R+R+ + + + + + + F ++ T L P + Sbjct: 120 LVTAM-NITDVDDKIIKRSRETG-----RNWLELAHAYDAE-FKENMTWLNVKPPNLRAH 172 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + +IP + I ++++ AY A +N + FD S NYG K+++ + Sbjct: 173 VSANIPVIQRFIDQLLVNKQAYVAQDNSVYFDVSKYANYG-----KLEKISKEAHAVAEM 227 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+N ADF LWK + EP W + WG GRPGWHIECSA++S + G D H GGLDL Sbjct: 228 GKRNAADFALWKAQKEEHEPSWPASWGGAGRPGWHIECSAIASMFFGNKVDFHAGGLDLR 287 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + ++ N W+H G L+L+G +KMSKS GN +T+ +LL+ Sbjct: 288 FPHHENEEAQCCAHFKTDQWVNYWLHTGQLHLQGEEQKMSKSLGNTVTVEQLLQ------ 341 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 + A R+A L+++YR + ++ Q + A L K+ Sbjct: 342 -KYTADEFRMACLLSNYRNAMQYSDQLMLTARQTLRKF 378 >gi|196006167|ref|XP_002112950.1| hypothetical protein TRIADDRAFT_25636 [Trichoplax adhaerens] gi|190584991|gb|EDV25060.1| hypothetical protein TRIADDRAFT_25636 [Trichoplax adhaerens] Length = 532 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 188/373 (50%), Gaps = 28/373 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YN+L Y+CGPTVYD H+G+A + FD++ R++ + Sbjct: 37 IKVYNSLTNSKVSLILPQDKLATWYMCGPTVYDSPHLGHASSYVKFDIIRRIMTDLFDID 96 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V ITDIDDKI++RA + K ++F++D L L T R Sbjct: 97 IVM-VMGITDIDDKIVQRAADTKT------GFRDLARKYEKEFLEDMECLNVLRATRVTR 149 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSF--SRRKIDEQKMGTRVP 180 T HI +I I+ I HG+AY+ ++ + F T + YG SR+ I + Sbjct: 150 VTEHIDHIIKFIEKIFQHGYAYKTSDGSVYFYTEKYGDRYGKLAPSRQTIHKSIDKATDS 209 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 EK + DF LWK + EP W+SPWG GRPGWHIECSAMSS G DIH GG+DL Sbjct: 210 EKISDR---DFALWKAAKADEPCWQSPWGSGRPGWHIECSAMSSAIFGNQLDIHTGGIDL 266 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQ +I + N ++H G L++ KMSKS NF+TI + L Sbjct: 267 LFPHHENEIAQCEAYHQINQWTNYFLHTGHLHIAKEKMSKSLRNFVTIKDYLNLN----- 321 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVLSALYNDL 359 R L++ YR P ++ +AE++ K+ + +K +D ++ S + Sbjct: 322 --SPDQFRTLCLLSKYRSPTEYNSDIFKKAEVVHQKFSSYINDAKAYVDGSINSLI---- 375 Query: 360 NTVSAIQALHKLA 372 S + L KLA Sbjct: 376 --ASESEILEKLA 386 >gi|51598852|ref|YP_073040.1| cysteinyl-tRNA synthetase [Borrelia garinii PBi] gi|61216166|sp|Q660S3|SYC_BORGA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|51573423|gb|AAU07448.1| cysteinyl-tRNA synthetase [Borrelia garinii PBi] Length = 480 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 160/494 (32%), Positives = 239/494 (48%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E S++++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKDFSELANF--SDVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F KD +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISKFFTEAFFKDCKKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +I+ + Y +N + FDTS +YG + + ++ Sbjct: 113 NVVYPDKVLIASKHIPNMIEVIKILEEKKFTYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MG-TRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MAFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS+GNFIT+ Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSHGNFITVKG 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP 349 L E +++ R L +HYR + F+ L ++I + S +DP Sbjct: 292 LEE------QNFSPLDFRYLCLTSHYRNQLKFSFNNLKASKIARENMINRLSYFYASLDP 345 Query: 350 AVLSAL---------------YN--------DLNTVSAIQALHKLARES----TKNHDLL 382 A L+ L Y+ DLN + L ++ + L Sbjct: 346 ADLNMLNKDLKNFGFSIEKEYYDSFVEKVSFDLNVSKGLALLWEVIKSENLGFVSKLKLA 405 Query: 383 PIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 IF+ + L E+ K+ N NI I ++ L++ER I K F AD IR KG Sbjct: 406 FIFDEIISLNLREEILKKSENHNIVIDENMKILLEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLIDTKEGTKVKR 479 >gi|269114835|ref|YP_003302598.1| Cysteinyl-tRNA synthetase [Mycoplasma hominis] gi|268322460|emb|CAX37195.1| Cysteinyl-tRNA synthetase [Mycoplasma hominis ATCC 23114] Length = 401 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 147/427 (34%), Positives = 217/427 (50%), Gaps = 40/427 (9%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R Y+CGPTVY++ HIGN RP++ FD++ R R GE V ++ NITDIDDKII +A+QE Sbjct: 3 RYYLCGPTVYNYPHIGNLRPIVSFDLMIRAQRQL-GED-VYFLHNITDIDDKIIAKAKQE 60 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 N I+S ++ + P R T+ + M IQ++I G AY Sbjct: 61 ------NKTEKEISSFYEAYYLNLFKLFSIEMPNKIVRVTDSLNDMYEYIQSLIEKGAAY 114 Query: 147 EANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE---KYHKKNPADFILWKRSTPMEP 202 + N + FD + YG KI QK+ + + + K++P DF LWK +T Sbjct: 115 QVNGNVYFDVLKFKDVYG-----KISNQKLANLISDSSNEVDKRSPYDFALWKDTTE-GI 168 Query: 203 GWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 ++SP+G GRPGWH ECS + Y GK DIHGGG+DLIFPHHENE Q +R + Sbjct: 169 KFQSPFGLGRPGWHTECSCFINKYFEGKQLDIHGGGIDLIFPHHENENIQHFAINR-QDI 227 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 A WIH G LN + +KMSKS GN I E L +++ A +L ML T Y +PI+ Sbjct: 228 AKDWIHFGTLNYKNQKMSKSIGNIIYAEEFL-------KNYSADTYKLLMLSTSYSKPIN 280 Query: 322 FTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES 375 T + L + ++ Q K +D ++ ++ +++ + A +L Sbjct: 281 ITDELLASLQKQINNIEAHFNKSQLEDIKYTLDKQIIDSILKNVSNLDFSLAFKQL---- 336 Query: 376 TKNHDLLPIFNASAHILGIEVCKEHLNKN-ISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 N L N +V L +N +S ++L ++ IL + K++ AD IR Sbjct: 337 --NEQLKSPLNYGNAFFVFKVLGFKLVENKVSNDDKELYRKWNILKEQKQYDKADEIRNI 394 Query: 435 LESKGFI 441 L++K I Sbjct: 395 LKTKRLI 401 >gi|254385070|ref|ZP_05000404.1| cysteinyl-tRNA synthetase [Streptomyces sp. Mg1] gi|194343949|gb|EDX24915.1| cysteinyl-tRNA synthetase [Streptomyces sp. Mg1] Length = 409 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/381 (35%), Positives = 201/381 (52%), Gaps = 32/381 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KI++T + P + R+YVCG T YD HIG+A FD++ R+ + Sbjct: 17 RDLKIHDTATQGTITLA---PGPVARIYVCGITPYDATHIGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA ++ + + + T F +D T L L P H Sbjct: 72 TKRQVHYVQNVTDVDDPLLERALRD------GQDWTELAERETSLFREDMTALRMLPPQH 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ + G AYE + +I F S PN+G S R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLRDAGAAYELDGDIYFSVESDPNFGQVSHLDAQAMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P++ KKNP D +LW + P EP W+ + GRGRPGWHIEC A++ +LG FDI Sbjct: 186 GD--PDRAGKKNPLDPMLWMAARPGEPSWDGASLGRGRPGWHIECVAIALDHLGMGFDIQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE + + A ++H G + L G KMSKS GN + ++ L Sbjct: 244 GGGSDLAFPHHEMGASHAQVLTGEFPMAKAYVHAGMVALHGEKMSKSKGNLVFVSAL--- 300 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDPAVL- 352 ++ G PA IRLA+L HYR ++T + L EA L +W S G+ A++ Sbjct: 301 RRAGVD--PA-AIRLALLSHHYRADWEWTDEVLAEAVARLERWRAAVSRPDGLPADALVE 357 Query: 353 ---SALYNDLNTVSAIQALHK 370 AL NDL+ A+ A+ + Sbjct: 358 EIREALANDLDAPGALAAVDR 378 >gi|224042836|ref|XP_002190645.1| PREDICTED: cysteinyl-tRNA synthetase 2, mitochondrial (putative) [Taeniopygia guttata] Length = 652 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 176/307 (57%), Gaps = 22/307 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y CGPTVYD AH+G+A + FD++ R++ ++G + V V ITDIDDKII+RA + + Sbjct: 145 YSCGPTVYDHAHLGHACSYVRFDIIRRIMTRFFGIE-VIMVMGITDIDDKIIKRANEMNI 203 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE- 147 S PI A++ I ++ F +D L L PT R T++IPQ+I I+ I+ G AY Sbjct: 204 S-PI--ALARIYEED---FKQDMAALKVLPPTVYMRVTDNIPQIISFIETIMSSGQAYAT 257 Query: 148 ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 + + FD S YG + D Q +++ K DF LWK + P E W S Sbjct: 258 SQGNVYFDVKSWGRRYGVLTAINPDTQDEAVDSDKRHGK----DFALWKAAKPQELSWNS 313 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG+GRPGWHIECS +SS GK DIH GG+DL FPHHENEIAQ + E+ N ++ Sbjct: 314 PWGKGRPGWHIECSTISSAVFGKQLDIHTGGIDLAFPHHENEIAQCEVYHQCEQWGNYFL 373 Query: 267 HNGFLNLEG--RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 H+G L+++G KMSKS N+ITI + L + + R+ L Y I+++ Sbjct: 374 HSGHLHVKGSQEKMSKSLKNYITIKDFL-------KKCSSDQFRMFCLRGRYSSAIEYSE 426 Query: 325 QRLTEAE 331 + + +A+ Sbjct: 427 ESMEDAK 433 >gi|224534810|ref|ZP_03675382.1| cysteine--tRNA ligase [Borrelia spielmanii A14S] gi|224514058|gb|EEF84380.1| cysteine--tRNA ligase [Borrelia spielmanii A14S] Length = 480 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 159/494 (32%), Positives = 231/494 (46%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E + N+++Y CGPTVYD+AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKNFSELTNFN--NVKVYACGPTVYDYAHIGNFRTYIFGDLLIKALRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F KD +L Sbjct: 60 -VDYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------HEISEFFTEAFFKDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +I+ + Y +N + FDTS +YG + + + Sbjct: 113 NIVYPNKVLVASKHIPIMIEVIKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLINKD 172 Query: 175 MG-TRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSRGNFITVED 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP 349 L E +++ R L +HYR + F++ L + I + S +DP Sbjct: 292 LEE------QNFSPLDFRYLCLTSHYRSQLKFSLNNLQASRIARENMINRLSYFYASLDP 345 Query: 350 AVLSALYNDLNTVSA-------------------IQALHKLARESTKNHDLLPIFNASAH 390 LS L DL + I L E K+ +L + Sbjct: 346 VDLSMLNKDLKNFAFSAEKEYYDSFIERVSFDLNISQGLALLWEIIKSENLGLVSKLRLA 405 Query: 391 ILGIEVCKEHLNKNISIAIEK-----------LVQERLILLKMKKFSSADYIRKQLESKG 439 + EV +L K I +E L++ER I K F AD IR KG Sbjct: 406 FIFDEVISLNLRKEILKNLENHDVVVDESMKILIEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLVDTKEGTKVKR 479 >gi|296165216|ref|ZP_06847763.1| cysteine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899405|gb|EFG78864.1| cysteine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 411 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 137/413 (33%), Positives = 214/413 (51%), Gaps = 39/413 (9%) Query: 4 KIKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+T +R++ + + P S MYVCG T YD H+G+A + FD++YR ++ Sbjct: 18 ELRLYDTSDRQV---RPVAPGSTATMYVCGITPYDSTHLGHAATYLTFDLVYR--QWLDL 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPT 120 V YV+N+TD+DD + ERA + D + + + +F +D L L P Sbjct: 73 GHDVHYVQNVTDVDDPLFERAER--------DGVDWRELGDREVARFREDMAALRVLPPR 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYG--SFSRRKIDEQKM 175 AT IP+++ L++ ++ G AY + + + + + P +G S R+ + Sbjct: 125 EYVAATQAIPEVVELVEKMLASGGAYVIDGDYPDVYYRADATPQFGYESGYDRETMLRLF 184 Query: 176 GTRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G R PE+ K + D +LW+ + P EP W SP+G GRPGWH+EC+A++S +G DI Sbjct: 185 GERGGDPERAGKTDELDALLWRAARPGEPSWPSPFGDGRPGWHVECAAIASSRIGSGLDI 244 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + ++ L Sbjct: 245 QGGGSDLIFPHHEFTAAHAECVRGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSTLRA 304 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 PA IRL +L HYR ++ Q L EA L +W + D A + Sbjct: 305 QGVE-----PA-AIRLGLLSGHYRADRFWSPQVLEEANTRLGRWRSATGLPAGPDAADVI 358 Query: 354 A-----LYNDLNTVSAIQALHKLARESTK--NHDL-LPIFNASA--HILGIEV 396 A L +DLNT A+ AL A ++ + HD P A+A +LG+E+ Sbjct: 359 ARVRQYLADDLNTPKALAALDGWATDALEYGGHDTDAPRLVATAIDALLGVEL 411 >gi|269124814|ref|YP_003298184.1| cysteine--tRNA ligase [Thermomonospora curvata DSM 43183] gi|268309772|gb|ACY96146.1| Cysteine--tRNA ligase [Thermomonospora curvata DSM 43183] Length = 372 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 178/348 (51%), Gaps = 23/348 (6%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + RMYVCG T YD H+G+AR + DV R+LR+ V RN+TD+DD ++ RA Sbjct: 21 GHARMYVCGITPYDTTHLGHARTFVWADVAARVLRH--AGNTVKVCRNVTDVDD-VLTRA 77 Query: 84 RQEHPSIPINDAISIITSKNTQQ--FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL 141 Q S P + ++ QQ F +D L + THQPRA N+I + I L Q ++ Sbjct: 78 AQRAGS-PYDSFAAV------QQYYFEQDMAALGVHSVTHQPRAHNYIRETIALAQALLD 130 Query: 142 HGHAYEANNEIIFDTSSIPNYGSFSRR-KIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 GHAY + F + +P R+ +D PE K +P D LW+ S Sbjct: 131 LGHAYLREGAVYFRGAHVPGQAGLDRQTALDLLAEYGDDPEDPRKDDPFDIALWRPSEAG 190 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 EP W SPW GRPGWH EC++M+ G D+H GG DL FPHH E A + + Sbjct: 191 EPAWPSPWSAGRPGWHAECASMALAIFGPALDLHAGGADLRFPHHAYESALAEAMTGVRP 250 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A W+H G ++ +G KM+KS GN + + +LL+ PA V+RLA+L T + + Sbjct: 251 FARAWLHVGMVSKDGAKMAKSTGNLVFVADLLKEH-------PASVLRLALLSTPWAQEW 303 Query: 321 DFTVQRLTEAEILLSKWPQTSTSKG---IIDPAVLSALYNDLNTVSAI 365 +T L+ A L + + G D AV +AL +DLN +A+ Sbjct: 304 HYTPGDLSAAAARLDRLHTAAGRPGSSPAADEAVTAALLDDLNVDAAL 351 >gi|326436975|gb|EGD82545.1| cysteinyl-tRNA synthetase [Salpingoeca sp. ATCC 50818] Length = 528 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 180/353 (50%), Gaps = 41/353 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIR------MYVCGPTVYDFAHIGNARPMIVFDVLYRLLR 58 ++++N L R++ + ++P+ + Y CGPTVYD +HIG+A FD+L R++ Sbjct: 16 LRVFNGLTRQL---ETVNPAGVNERGWLTWYQCGPTVYDHSHIGHAVCFQRFDILRRVME 72 Query: 59 YYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 ++G V V +TDIDDKII +A E I + + F +D L L Sbjct: 73 RHFGMH-VLQVWGMTDIDDKIIRKAHTEQRHW------QDIARQYEESFFQDMAALNILP 125 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI--PNYGSFSRRKIDEQKMG 176 P H R T HI ++I IQ I+ GHAY + + FD + YG + Sbjct: 126 PAHITRVTEHIDEIIEFIQGILDRGHAYVTPSGVYFDLQAFGEDKYGRLGKGVQSTAAAS 185 Query: 177 TRVPEKY----------HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHY 226 TR HK++ ADF LWKR +P W++P+G+GRPGWHIECSAM+S Y Sbjct: 186 TRADADAGAAADSNDAAHKRHRADFALWKRGDAGDPTWDAPFGKGRPGWHIECSAMASKY 245 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCAD---RIEKTANIWIHNGFLNLEGRKMSKSNG 283 LG+ DIH GG+DL++PHH NE+AQ C + + W H G L KMSKS G Sbjct: 246 LGQHIDIHTGGIDLLYPHHTNELAQ--CESHYGHCDWVRHFW-HTGHLTTRSEKMSKSLG 302 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 N I I + L++ +R+ L + YR I F+ +T A LL + Sbjct: 303 NTIAIKDFLQSHTHND-------LRMLCLQSRYRSDIAFSDSDVTAASRLLQR 348 >gi|227487324|ref|ZP_03917640.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542745|ref|ZP_03972794.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092750|gb|EEI28062.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181511|gb|EEI62483.1| cysteinyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] Length = 404 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 29/387 (7%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+++T ++++ E +N + MYVCG T YD H+G+A + FD+ R L G Sbjct: 19 LKLFDTADQRVKEVDTTPDANGEVGMYVCGITPYDSTHLGHAATYLTFDLAQRQL-LANG 77 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V YV+NITD+DD + ERA ++ D + TS+ F D L+ + P Sbjct: 78 HK-VHYVQNITDVDDPLFERAERDGV-----DWRELGTSQ-INLFRSDMEILSVIPPCDY 130 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIF---DTSSIPNYGSFSRRKIDEQKMGTRV 179 A + ++I ++Q ++ G AYE + I+ D + Y S R E+ R Sbjct: 131 IGAMESVDEVIAMVQQLLDAGAAYELDQGDIYASIDATEQFGYESNLDRATMEEYFAERG 190 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P++ K++P D ++W+ EP W+SP+G GRPGWH+ECSA++++ LG F I GGG Sbjct: 191 GDPDREGKRDPLDALVWRGHREGEPAWDSPFGPGRPGWHVECSAIATNRLGSHFAIQGGG 250 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHE A + A ++E+ A ++H G + L+G KMSKS GN + +++L E Sbjct: 251 SDLAFPHHEFSAAHAEAALKVERMAGHYVHAGMIALDGVKMSKSLGNLVFVHKLSEAGH- 309 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPA 350 IRLA+ HYRE DF+ L EAE L++W + + + ++D Sbjct: 310 -----DPSAIRLAVFSGHYREDRDFSDAILAEAEERLARWREQLAGEVSEAGATDVVDK- 363 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK 377 + + L +DLNT A+ L A + + Sbjct: 364 LRAILADDLNTPEALSLLDGAAGDCNQ 390 >gi|320011719|gb|ADW06569.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces flavogriseus ATCC 33331] Length = 409 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 207/391 (52%), Gaps = 36/391 (9%) Query: 3 KKIKIYNTLER-KITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++I++T +IT +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGRIT----LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WL 70 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 ++ V YV+N+TD+DD ++ERA ++ + + + + T F +D T L L P Sbjct: 71 DTKRQVHYVQNVTDVDDPLLERAVRD------GEDWTELAERETALFREDMTALRMLPPK 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQK 174 H A IP ++ L++ + G AYE + ++ F S P++G S R + ++ Sbjct: 125 HYIGAVEAIPGIVPLVERLRDAGAAYELDGDVYFSVESDPHFGEVSNLDAEAMRLLSAER 184 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDI 233 G PE+ KKNP D +LW + EP W+ GRGRPGWHIEC A++ +LG FD+ Sbjct: 185 GGD--PERPGKKNPLDPMLWMAAREGEPSWDGGSLGRGRPGWHIECVAIALDHLGMTFDV 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 243 QGGGSDLAFPHHEMGASHAQVLTGEHPFAKAYVHAGMVGLDGEKMSKSKGNLVFVSALRR 302 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGII 347 PA IRL +L HYR ++T Q L +A L++W P ++ ++ Sbjct: 303 ADVD-----PA-AIRLTLLAHHYRSDWEWTDQVLADAVERLARWRAAVSRPDGLSADALV 356 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKN 378 + V AL +DL+T +A+ A+ + A T Sbjct: 357 E-EVREALADDLDTPAALAAVDRWAELQTSG 386 >gi|260578725|ref|ZP_05846633.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium jeikeium ATCC 43734] gi|258603222|gb|EEW16491.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium jeikeium ATCC 43734] Length = 415 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 203/389 (52%), Gaps = 34/389 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+T + + + I + MYVCG T YD H+G+A + FD+++R LR G Sbjct: 18 QLRLYDTADDVVKPVE-IPAGEVGMYVCGITPYDSTHLGHAATYLTFDLIHRYLRA--GG 74 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+NITD+DD + ERA ++ + D + + F D LA + P Sbjct: 75 HGVHYVQNITDVDDPLFERAERD--GVDWQD----LGTSQIDLFRSDMEDLAVIPPRDYI 128 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 A I ++I ++ ++ G AY+ + I D + +P +G SR E++M Sbjct: 129 GAMESIDEVIEMVAKLLEVGAAYQLEGDEYPDIYADYTFLPQFGYESRYS--EEQMAEFF 186 Query: 180 ------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 PE+ K++P D +LW+ EP W+SP+G GRPGWHIECSA++ + LG F I Sbjct: 187 AERGGDPERPGKRHPMDALLWRAHREGEPKWDSPFGPGRPGWHIECSAIAVNRLGAPFAI 246 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE + A +++ A+ ++H G + L+G KMSKS GN + +++L Sbjct: 247 QGGGSDLRFPHHEFSATHAEAAHGVDRMAHHYVHTGMIGLDGTKMSKSLGNLVFVSKLTA 306 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDPA-- 350 PA IRL + HYR+ D+T L AE L+ W +T +D A Sbjct: 307 AGHE-----PA-AIRLGVYAGHYRQDRDWTNDVLAHAEHRLASWRAALATGSTPLDEARE 360 Query: 351 ----VLSALYNDLNTVSAIQALHKLARES 375 V L NDL+T +A+ AL A ++ Sbjct: 361 LVATVRGHLANDLDTAAALDALDGWAADT 389 >gi|32479379|ref|NP_862232.1| cysteinyl-tRNA synthetase [Corynebacterium striatum] gi|81324595|sp|Q9FB57|MSHC_CORST RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|9945792|gb|AAG03366.1| CysS [Corynebacterium striatum] Length = 404 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 29/387 (7%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+++T ++++ E +N + MYVCG T YD H+G+A + FD+ R L G Sbjct: 19 LKLFDTADQRVKEVDTTPDANGEVGMYVCGITPYDSTHLGHAATYLTFDLAQRQL-LANG 77 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V YV+NITD+DD + ERA ++ D + TS+ F D L+ + P Sbjct: 78 HK-VHYVQNITDVDDPLFERAERDGV-----DWRELGTSQ-INLFRSDMEILSVIPPCDY 130 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIF---DTSSIPNYGSFSRRKIDEQKMGTRV 179 A + ++I ++Q ++ G AYE + I+ D + Y S R E+ R Sbjct: 131 IGAMESVDEVIAMVQQLLDAGAAYELDQGDIYASIDATEQFGYESNLDRATMEEYFAERG 190 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P++ K++P D ++W+ EP W+SP+G GRPGWH+ECSA++++ LG F I GGG Sbjct: 191 GDPDREGKRDPLDALVWRGHREGEPAWDSPFGPGRPGWHVECSAIATNRLGSHFAIQGGG 250 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHE A + A ++E+ A ++H G + L+G KMSKS GN + +++L E Sbjct: 251 SDLAFPHHEFSAAHAEAALKVERMAGHYVHAGMIALDGVKMSKSLGNLVFVHKLSEAGH- 309 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPA 350 IRLA+ HYRE DF+ L EAE L++W + + + ++D Sbjct: 310 -----DPSAIRLAVFAGHYREDRDFSDAILAEAEERLTRWREQLAGEVSEAEATEVVDK- 363 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK 377 + + L +DLNT A+ L A + + Sbjct: 364 LRAILADDLNTPEALSLLDGAAGDCNQ 390 >gi|66807293|ref|XP_637369.1| cysteinyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74996749|sp|Q54KR1|SYCC_DICDI RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|60465778|gb|EAL63854.1| cysteinyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 660 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 178/312 (57%), Gaps = 24/312 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y CGPTVYD +H+G+AR I FD++ R+++ Y G + YV NITDIDDKII RA + Sbjct: 63 YACGPTVYDASHMGHARTYISFDIIRRIMKNYLGFN-IQYVMNITDIDDKIIIRANENGI 121 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 S S ++ K F +D L L P R T ++PQ++ ++ II +G AYE+ Sbjct: 122 SH------SDLSKKWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKIISNGFAYES 175 Query: 149 NNEIIFDT---SSIPNYGSFSRRKIDEQKMG-------TRVPEKYHKKNPADFILWKRST 198 N + FDT S +YG + +K+ T K++ DF LWK+S Sbjct: 176 NGSVYFDTVAFSKAHDYGKLEPNSVGNEKLAAEGEGSLTATSAVSEKRSGFDFALWKKSK 235 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 P EP W SPWG GRPGWHIECSAM+S LG DIH GG DL FPHH+NE+AQS Sbjct: 236 PGEPVWNSPWGEGRPGWHIECSAMASDLLGGNIDIHSGGSDLKFPHHDNELAQSEAFYGN 295 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 + N ++H+G L ++G KMSKS NFITI + LE K+ R +R+ ++ Y + Sbjct: 296 RQWINYFVHSGHLLIDGLKMSKSLKNFITIKQALE--KYTSRQ-----MRMFFILHKYDK 348 Query: 319 PIDFTVQRLTEA 330 ++++ + + A Sbjct: 349 AMNYSPESMGYA 360 >gi|216263552|ref|ZP_03435547.1| cysteinyl-tRNA synthetase [Borrelia afzelii ACA-1] gi|215980396|gb|EEC21217.1| cysteinyl-tRNA synthetase [Borrelia afzelii ACA-1] Length = 480 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 156/494 (31%), Positives = 239/494 (48%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT + +E D N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLHNTRTKDFSELTNFD--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+++ AR++ ++ I+ T+ F KD +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVVKTAREKGLTVQE------ISEFFTEAFFKDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK-IDEQ 173 + P A+ HIP MI +++ + Y +N + FDTS +YG + ID+ Sbjct: 113 NVVYPDKVLIASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS+GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSSGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP 349 L E +++ R L +HYR + F++ L ++I + S +DP Sbjct: 292 LEE------QNFSPLDFRYLCLTSHYRNQLKFSLNNLQASKIARENMINRLSYFYASLDP 345 Query: 350 AVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH----DLL 382 L L Y+ DLN + L ++ + + L Sbjct: 346 VALGVLNKDLKNFGFSEEKEYYDSFIEKVSFDLNISQGLALLWEIIKSENLSFVSKLRLA 405 Query: 383 PIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 IF+ + L E+ K N ++ + ++ L++ER I K F AD IR KG Sbjct: 406 FIFDEIMSLNLREEILKNLENHDVVVDENMKTLIEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLVDTKEGTKVKR 479 >gi|172039961|ref|YP_001799675.1| cysteinyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109] gi|310947167|sp|B1VEQ2|MSHC1_CORU7 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 1; Short=L-Cys:GlcN-Ins ligase 1; AltName: Full=Mycothiol ligase 1; Short=MSH ligase 1 gi|171851265|emb|CAQ04241.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 404 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 29/387 (7%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+++T ++++ E +N + MYVCG T YD H+G+A + FD+ R L G Sbjct: 19 LKLFDTADQRVKEVDTTPDANGEVGMYVCGITPYDSTHLGHAATYLTFDLAQRQL-LANG 77 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V YV+NITD+DD + ERA ++ D + TS+ F D L+ + P Sbjct: 78 HK-VHYVQNITDVDDPLFERAERDGV-----DWRELGTSQ-INLFRSDMEILSVIPPRDY 130 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIF---DTSSIPNYGSFSRRKIDEQKMGTRV 179 A + ++I ++Q ++ G AYE + I+ D + Y S R E+ R Sbjct: 131 IGAMESVDEVIAMVQQLLDAGAAYELDQGDIYASIDATEQFGYESNLDRATMEEYFAERG 190 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P++ K++P D ++W+ EP W+SP+G GRPGWH+ECSA++++ LG F I GGG Sbjct: 191 GDPDREGKRDPLDALVWRGHREGEPAWDSPFGPGRPGWHVECSAIATNRLGSHFAIQGGG 250 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHE A + A ++E+ A ++H G + L+G KMSKS GN + +++L E Sbjct: 251 SDLAFPHHEFSAAHAEAALKVERMAGHYVHAGMIALDGVKMSKSLGNLVFVHKLSEAGH- 309 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPA 350 IRLA+ HYRE DF+ L EAE L++W + + + ++D Sbjct: 310 -----DPSAIRLAVFAGHYREDRDFSDAILAEAEERLTRWREQLAGEVSEAEATEVVDK- 363 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK 377 + + L +DLNT A+ L A + + Sbjct: 364 LRAILADDLNTPEALSLLDGAAGDCNQ 390 >gi|227833074|ref|YP_002834781.1| MshC ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182436|ref|ZP_06041857.1| cysteinyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] gi|310947180|sp|C3PG89|MSHC_CORA7 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|227454090|gb|ACP32843.1| MshC ligase [Corynebacterium aurimucosum ATCC 700975] Length = 414 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/430 (32%), Positives = 216/430 (50%), Gaps = 51/430 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + +Y++ + ++ I MYVCG T YD H+G+A + FD++YR LL Y Sbjct: 19 LHLYDSADGEVKRLN-IKGETATMYVCGITPYDSTHLGHAATYLTFDLIYRQLLDNGY-- 75 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y +NITD+DD + ERA ++ D + TS+ F D L+ P H Sbjct: 76 -KVNYAQNITDVDDPLFERAERDGV-----DWRELGTSQ-INLFRSDMELLSVFPPQHFV 128 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKID---EQ 173 A I ++ ++Q ++ G AY ++ ++ + N+G ++SR +++ + Sbjct: 129 GAMEAIDEITEMVQALLDAGAAYVVDDPDYPDVYASIEATKNFGYESNYSREQMETFFAE 188 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G PE+ K++P D ++W+ EP WESP+G GRPGWHIECSA++++ LG FDI Sbjct: 189 RGGD--PERPGKRDPLDALIWRAHREGEPAWESPFGPGRPGWHIECSAIATNRLGSSFDI 246 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE A + A +E+ A ++H G + LEG KMSKS GN + +++L+E Sbjct: 247 QGGGSDLKFPHHEFSAAHAEAALGVERMAQSYVHTGMIGLEGTKMSKSLGNLVFVHKLVE 306 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--- 350 IRL + HYRE D++ + L A+ L +W S + G ++ Sbjct: 307 AGV------DPSAIRLGVFSGHYREDRDWSDEVLHTAQERLERWRAASRNPGTVEEIKEV 360 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 V AL DL+T AI L + A ++ LG E + + Sbjct: 361 VHNVRLALAEDLDTQRAIAVLDQWAEQA----------------LGAAEASEEASDVLRT 404 Query: 408 AIEKLVQERL 417 A+ L+ RL Sbjct: 405 AVNSLLGVRL 414 >gi|85858128|ref|YP_460330.1| cysteinyl-tRNA synthetase [Syntrophus aciditrophicus SB] gi|85721219|gb|ABC76162.1| cysteinyl-tRNA synthetase [Syntrophus aciditrophicus SB] Length = 769 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 234/474 (49%), Gaps = 54/474 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+ YN L R F+ ++P + M+ CGPT ++ HIG+ R +V D++ R L + E Sbjct: 306 IRFYNVLSRSKNFFRPVNPDKVLMHSCGPTTHEVPHIGSYRRFVVSDLIRRYLEFRGYE- 364 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NI D+ D+ I A +E + + T++ + F+ D +L PR Sbjct: 365 -VKHVLNIIDLADRSIRGAEREGMDL------GVYTARCEEVFLNDINKLNIKKDESYPR 417 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 A+ + M+ L++ ++ G AYE + FD S + +YG S + + G R+ + Y Sbjct: 418 ASENFDSMVKLVEKLVDKGFAYEKLRSVYFDISKLRDYGCLSNIDLVRVQHGRRIDLDDY 477 Query: 184 HKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K +P DF L KRST E +++ WG RP WH+EC+A++ HYL FDIH G D Sbjct: 478 EKDSPVDFTLLKRSTLSELKRGVFFKTRWGNVRPSWHLECAAIAQHYLADTFDIHASGSD 537 Query: 240 LIFPHHEN--EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 ++FPH EN I ++ RI AN WI+ + + G+KMS+S N +T+ E LE K + Sbjct: 538 IVFPHCENVMAIGKAATGKRI---ANYWINTELVMVGGKKMSRSLNNALTL-EDLEKKGY 593 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---ILLSKWPQ--TSTSKGIIDPAVL 352 GR +R ++ +HYR+P++F+ L A+ + L+ + Q G DP + Sbjct: 594 SGRE-----VRFFLVSSHYRKPLNFSFGALDTAKNTVLKLNGFIQRLIRLKAGEGDPDLE 648 Query: 353 SALY-----------NDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAH 390 LY +DLN A+ L ++ + + +L Sbjct: 649 QKLYDLRQGFTAAMDDDLNISGALAVLFDFVKKVSSSLAQGVLTVEQRDQVLEALKKIDD 708 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ +E + IS +L++ R L + +++ AD IR++L G ++ D Sbjct: 709 VLGVMKFEE---EQISEEALQLMKRREALRQEGRWAQADEIRQRLLDMGVVVAD 759 >gi|194246729|ref|YP_002004368.1| Cysteinyl-tRNA synthetase [Candidatus Phytoplasma mali] gi|193807086|emb|CAP18522.1| Cysteinyl-tRNA synthetase [Candidatus Phytoplasma mali] Length = 438 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 234/462 (50%), Gaps = 50/462 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK F+ + + I MYVCGPTVYD H+GNARP+I F++L + L+ + Sbjct: 2 LKIYNTLTRKKEIFKPLYSNIINMYVCGPTVYDNIHLGNARPLIFFNMLKKYLQNLNFQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y NITDIDDKII+ A ++ + I++K F+ +L + P+ Sbjct: 61 -VNYAVNITDIDDKIIKIAIEQKTTE------KFISTKYINCFLNILKQLEIENIDYFPQ 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ IP +I I+ +I G+AY + + F I NYG + I++ K R Sbjct: 114 VTDFIPSIISYIEKLIFKGYAYINDQGVYFRVGLISNYGQLGSKIIEDLKKNNRKEFDSQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DFILWK+ T ++SPW GRPGWH EC M DIHGGG DL FPH Sbjct: 174 KENHQDFILWKK-TKFGIKYQSPWFEGRPGWHTECVVMIKKIFNVTLDIHGGGNDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS D +N +IH G ++ + KMSKS GN I + +LL + + Sbjct: 233 HENELAQSIAYDG-NNLSNFFIHIGRIDYQQVKMSKSLGNVIWVKDLL-------KKFHP 284 Query: 305 PVIRLAMLMTHYREPIDF-------TVQRLTEAEILLSKWPQTSTSKGI----IDPAVLS 353 VI+L +L +YR+PI+F V + + LL K I ++ +++ Sbjct: 285 NVIKLLILSHYYRQPINFHDSLMEQFVAKYEKINNLLQKNNFILKINNIFSNQLEISMIK 344 Query: 354 ALY----NDLNTVSAIQALHK----------LARESTKNHDLLPIFNASAHILGIEVCKE 399 Y +DLNT + + + K R S + L+ I N ILGI++ + Sbjct: 345 EFYEYMNDDLNTPNVVSLIEKGLKIFHQNINFDRLSQIQNTLIFILN----ILGIKIFLK 400 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + K I I I L Q+ K + F +DY RK L GFI Sbjct: 401 PVTKEI-IEIYHLWQKE---FKCRNFEKSDYYRKILIDLGFI 438 >gi|312139693|ref|YP_004007029.1| mycothiol ligase mshc [Rhodococcus equi 103S] gi|325676858|ref|ZP_08156531.1| cysteine--tRNA ligase [Rhodococcus equi ATCC 33707] gi|311889032|emb|CBH48345.1| mycothiol ligase MshC [Rhodococcus equi 103S] gi|325552406|gb|EGD22095.1| cysteine--tRNA ligase [Rhodococcus equi ATCC 33707] Length = 413 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 204/390 (52%), Gaps = 35/390 (8%) Query: 5 IKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T +R++ + + P + +MYVCG T YD H+G+A + FD++ R+LR Sbjct: 19 LRLYDTADRQV---RPVTPGATAKMYVCGITPYDATHLGHAATYLTFDLVNRVLRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD + ERA ++ + ++ + T F +D L L P Sbjct: 74 HAVHYVQNVTDVDDPLFERADRD------GEDWVVLGMRETALFREDMEALRVLPPQDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKIDE---Q 173 A I +++ L++ + G AY ++ ++ F + +G + R +D + Sbjct: 128 GAVESIGEVVELVEKFVASGAAYVVDDPEYPDVYFRADATAQFGYESGYDRATMDHFFAE 187 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G P + K++P D ++W+ P EP W SP+G GRPGWHIEC+A++ + +G FDI Sbjct: 188 RGGD--PNRPGKRDPLDALVWRAQRPGEPSWPSPFGPGRPGWHIECAAIALNRIGSGFDI 245 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + A ++ A ++H G + L+G KMSKS GN + +++L Sbjct: 246 QGGGSDLIFPHHEFSAAHAESATGTDRFARHYVHTGMIGLDGEKMSKSRGNLVFVSKLR- 304 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 G IRL +L HYR +T Q L +A+ L+ W + + + Sbjct: 305 -----GEGVDPAAIRLGLLSGHYRVDRPWTDQVLADAQERLALWRKAAALESAPSAEDTV 359 Query: 354 A-----LYNDLNTVSAIQALHKLARESTKN 378 A L +DL+T A+ AL AR + + Sbjct: 360 ARLRQHLADDLDTPKALDALDGWARRAVDH 389 >gi|326780298|ref|ZP_08239563.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces cf. griseus XylebKG-1] gi|326660631|gb|EGE45477.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces cf. griseus XylebKG-1] Length = 409 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 208/385 (54%), Gaps = 36/385 (9%) Query: 3 KKIKIYNTLER-KITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++I++T +IT +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGRIT----LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WL 70 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 ++ V YV+N+TD+DD ++ERA ++ + + + T F +D T L L P Sbjct: 71 DTKRQVHYVQNVTDVDDPLLERAVRD------GQDWTELAERETALFREDMTALRMLPPR 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQK 174 H A IP ++ L++ + G AY+ + +I F + P++G S R + ++ Sbjct: 125 HYIGAVEAIPGIVPLVERLRDSGAAYDLDGDIYFSVDTDPHFGEVSGLDAEAMRLLSAER 184 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G PE+ KKNP D +LW + P EP W+ + G GRPGWHIEC A++ +LG FDI Sbjct: 185 GGD--PERPGKKNPLDPMLWMAARPGEPSWDGASLGEGRPGWHIECVAIALDHLGMGFDI 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 243 QGGGSDLAFPHHEMGASHAQALTGEHPFAKAYVHAGMVGLDGEKMSKSRGNLVFVSTLRR 302 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGII 347 PA +RLA+L HYR ++T Q L EA L++W P +++ ++ Sbjct: 303 EGVD-----PA-ALRLALLSRHYRSDWEWTDQVLAEAVERLARWRAAVSRPDGPSAEALV 356 Query: 348 DPAVLSALYNDLNTVSAIQALHKLA 372 + V AL +DL++ +A+ A+ + A Sbjct: 357 E-EVREALADDLDSPAALAAVDRWA 380 >gi|291000007|ref|XP_002682571.1| cysteinyl-tRNA synthetase [Naegleria gruberi] gi|284096198|gb|EFC49827.1| cysteinyl-tRNA synthetase [Naegleria gruberi] Length = 668 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 143/449 (31%), Positives = 215/449 (47%), Gaps = 83/449 (18%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 I++YN+L + +F D SN I Y CGPTVYD++H+G+AR + FD++ R+L Y+ Sbjct: 29 IEVYNSLTCQKEKFILQDNSNTITWYTCGPTVYDWSHMGHARTYVGFDIVRRILEDYFNF 88 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y+ NITDIDDKII ++ S+P F +D +L PT Sbjct: 89 N-VIYIENITDIDDKII---KKNFLSVP---------RYYEHLFWEDMKQLQVKTPTVLV 135 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSFS-------RRKID 171 R T HI +++ IQ II +G AYE + FD + YG R +D Sbjct: 136 RVTEHIDEVVSFIQQIIDNGFAYEEGGNVYFDVEAFQQNQKHVYGKLEPWNVNCEERLMD 195 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV- 230 + + + KK+ DF LWK S P EP W+S WG+GRPGWHIECSAM+ + L + Sbjct: 196 GEGESETEKKVFKKKSKKDFALWKTSKPGEPEWDSKWGKGRPGWHIECSAMACYALQQAA 255 Query: 231 -----------FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMS 279 D+H GG+DL FPHH+NE+AQS + N ++H G L+++G MS Sbjct: 256 KLAGRSANDATLDVHCGGIDLKFPHHDNELAQSEAYLGSRQWVNYFLHTGHLSIDGMSMS 315 Query: 280 KSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL------ 333 KS NFITI + LE + A IR+ L + + ++++ + A+ + Sbjct: 316 KSKKNFITIRQALE-------KYTARQIRMMFLYRKFDDEMEYSETTMEYAKSIEKSFQE 368 Query: 334 -------------------LSKWPQT------STSKGIIDPAVLSALYNDLNTVSAIQAL 368 + KW Q + SK +D V +AL N +T+ + L Sbjct: 369 FFGNLKIIFRDYVTKTGKSIEKWDQADFELSETLSKSKLD--VDTALRNSFDTIKCMITL 426 Query: 369 HKLAREST-----KNHDLLPIFNASAHIL 392 L + + KN+ +P+ + + Sbjct: 427 QSLIKATNTYLEKKNYPSVPLLKQVGYYV 455 >gi|541386|pir||F53402 cysteine-tRNA ligase (EC 6.1.1.16) - Bacillus stearothermophilus (fragment) Length = 221 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 138/226 (61%), Gaps = 8/226 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + + Sbjct: 4 IRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDK+I+ AR+ S+P I + + + +D L C PR Sbjct: 63 -VTYVSNFTDVDDKLIKAARELGESVPA------IAERFIEAYFEDIQALGCKKADIHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I IQ +I G+AYE + ++ + T P YG S + IDE + G R+ Sbjct: 116 VTENIGTIIEFIQALIDKGYAYEVDGDVYYRTRKFPGYGKLSHQSIDELQAGARIEVGEK 175 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG V Sbjct: 176 KDDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMAGRYLGTV 221 >gi|182439633|ref|YP_001827352.1| cysteinyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] gi|310947221|sp|B1W2Y7|MSHC_STRGG RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|178468149|dbj|BAG22669.1| putative cysteinyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 409 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 208/385 (54%), Gaps = 36/385 (9%) Query: 3 KKIKIYNTLER-KITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++I++T +IT +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGRIT----LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WL 70 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 ++ V YV+N+TD+DD ++ERA ++ + + + T F +D T L L P Sbjct: 71 DTKRQVHYVQNVTDVDDPLLERAVRD------GQDWTELAERETALFREDMTALRMLPPR 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS------RRKIDEQK 174 H A IP ++ L++ + G AY+ + +I F + P++G S R + ++ Sbjct: 125 HYIGAVEAIPGIVPLVERLRDAGAAYDLDGDIYFSVDTDPHFGEVSGLDAEAMRLLSAER 184 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G PE+ KKNP D +LW + P EP W+ + G GRPGWHIEC A++ +LG FDI Sbjct: 185 GGD--PERPGKKNPLDPMLWMAARPGEPSWDGASLGEGRPGWHIECVAIALDHLGMGFDI 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 243 QGGGSDLAFPHHEMGASHAQALTGEHPFAKAYVHAGMVGLDGEKMSKSRGNLVFVSTLRR 302 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGII 347 PA +RLA+L HYR ++T Q L EA L++W P +++ ++ Sbjct: 303 EGVD-----PA-ALRLALLSRHYRSDWEWTDQVLAEAVERLARWRAAVSRPDGPSAEALV 356 Query: 348 DPAVLSALYNDLNTVSAIQALHKLA 372 + V AL +DL++ +A+ A+ + A Sbjct: 357 E-EVREALADDLDSPAALAAVDRWA 380 >gi|225548609|ref|ZP_03769656.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 94a] gi|225370639|gb|EEH00075.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 94a] Length = 480 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 161/501 (32%), Positives = 246/501 (49%), Gaps = 73/501 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E + N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N ADF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKADFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K ++++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQRMTR 456 KGF+L D K G R+ R Sbjct: 462 AKKGFVLVDTK---EGTRVKR 479 >gi|111115428|ref|YP_710046.1| cysteinyl-tRNA synthetase [Borrelia afzelii PKo] gi|123341311|sp|Q0SMQ8|SYC_BORAP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110890702|gb|ABH01870.1| cysteinyl-tRNA synthetase [Borrelia afzelii PKo] Length = 480 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 156/494 (31%), Positives = 238/494 (48%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT + +E D N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLHNTRTKDFSELTNFD--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+++ AR++ ++ I+ T+ F KD +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVVKTAREKGLTV------QEISEFFTEAFFKDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK-IDEQ 173 + P A+ HIP MI +++ + Y +N + FDTS +YG + ID+ Sbjct: 113 NVVYPDKVLIASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDP 349 L E +++ R L +HYR + F++ L ++I + S +DP Sbjct: 292 LEE------QNFSPLDFRYLCLTSHYRNQLKFSLNNLQASKIARENMINRLSYFYASLDP 345 Query: 350 AVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH----DLL 382 L L Y+ DLN + L ++ + + L Sbjct: 346 VALGVLNKDLKNFGFSEEKEYYDSFIEKVSFDLNISQGLALLWEIIKSENLSFVSKLRLA 405 Query: 383 PIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 IF+ + L E+ K N ++ + ++ L++ER I K F AD IR KG Sbjct: 406 FIFDEIMSLNLREEILKNLENHDVVVDENMKTLIEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLVDTKEGTKVKR 479 >gi|257056227|ref|YP_003134059.1| cysteinyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] gi|310947214|sp|C7MWX8|MSHC_SACVD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|256586099|gb|ACU97232.1| cysteinyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] Length = 415 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 125/394 (31%), Positives = 206/394 (52%), Gaps = 37/394 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + +++Y+T +I + P + +MYVCG T YD H+G+A + FD+++RL + Sbjct: 16 SRPLRLYDTATGQI---RPTAPGRVAKMYVCGITPYDATHLGHAATYLAFDLVHRL--WL 70 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V YV+N+TDIDD ++ERA ++ ++ ++ + T F +D L L P Sbjct: 71 DAGHEVHYVQNVTDIDDPLLERAERD------SEDWVVLGLRETALFREDMEALRVLPPR 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSI------PNYGSFSRRKI 170 A IP+++ +I+ ++ G AY ++ ++ FD S NY + R I Sbjct: 125 DFVGAVESIPEVVEMIEKLLASGAAYRVDDPEYPDVYFDRSFTGRFGYESNYDDETMRAI 184 Query: 171 DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 ++ G P++ K++P D +LW+ P EP W+S GRGRPGWHIECSA++ +LG Sbjct: 185 FPERGGD--PDRPGKRDPLDALLWRVERPGEPAWDSSLGRGRPGWHIECSAIALKHLGIG 242 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ GGG DL+FPHHE A + A ++H G + L+G KMSKS GN + ++ Sbjct: 243 FDVQGGGSDLVFPHHEFSAAHAEAMTGEHPFARHYVHAGMIGLDGEKMSKSKGNLVFVSR 302 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSK 344 L IRLA+ HYR+ ++T + L +A L++W P ++ Sbjct: 303 LRADDV------DPSAIRLALFAGHYRDDREWTDELLKQANSRLARWREAVSLPSGPDAE 356 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 +D + L +DL+T A+ A+ E+ ++ Sbjct: 357 ATVD-RLRDHLADDLDTPKALAAVDAWVDEALRH 389 >gi|306836112|ref|ZP_07469098.1| cysteine--tRNA ligase [Corynebacterium accolens ATCC 49726] gi|304567962|gb|EFM43541.1| cysteine--tRNA ligase [Corynebacterium accolens ATCC 49726] Length = 412 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 196/365 (53%), Gaps = 40/365 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD++YR ++ K V Y +NITD+DD + ERA ++ Sbjct: 41 MYVCGITPYDSTHLGHAATYLTFDLIYR--QFLDAGKKVNYAQNITDVDDPLFERAERDG 98 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 D + TS+ F D L+ + P H A + +++ ++Q ++ +G AY Sbjct: 99 -----VDWRELGTSQ-IDLFRSDMELLSVIPPQHFIGAMEAVDEIVDMVQKLLDNGAAYV 152 Query: 147 -------------EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193 +A E +++ NY R+ ++ G P++ KK+P D ++ Sbjct: 153 VDDPEYPDVYASIDATEEFGYES----NYSMEQMREFFAERGGD--PDRPGKKHPMDALI 206 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ EP W+SP+G GRPGWHIECSA++++YLG FDI GGG DL FPHHE A + Sbjct: 207 WRAHREGEPAWKSPFGPGRPGWHIECSAIATNYLGSTFDIQGGGSDLKFPHHEFSAAHAE 266 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 A +++ A ++H G + L+G KMSKS GN + +++L+E + IRL + Sbjct: 267 AALGVDRMAQFYVHTGMIGLDGVKMSKSLGNLVFVHKLVEQGE------DPSAIRLGVFS 320 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------VLSALYNDLNTVSAIQA 367 HYR D++ + L +A+ L+ W + G + A + AL +DL+T +A++A Sbjct: 321 GHYRAERDWSDEVLDQAKARLATWRTALEAPGSLSAAEGAVAGLRQALADDLDTPTALRA 380 Query: 368 LHKLA 372 + A Sbjct: 381 IDDWA 385 >gi|195122364|ref|XP_002005681.1| GI18944 [Drosophila mojavensis] gi|193910749|gb|EDW09616.1| GI18944 [Drosophila mojavensis] Length = 537 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 185/338 (54%), Gaps = 22/338 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYN R +P + Y CGPTVYD H+G+A + D++ R+LR Y+ Sbjct: 27 INIYNHRVRGKVPLVLRNPHMVTWYTCGPTVYDKTHVGHASTYVKVDIIQRILRDYFKYN 86 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T + NITD+DDKII R++++ + + +F ++ RL P + Sbjct: 87 LITAM-NITDVDDKIITRSKEQGRNW------QELARTYDAEFKENMLRLNVKPPNMRAH 139 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE-IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + +IP + I+ +I + AY A ++ + FD S NYG + I +++ + E+ Sbjct: 140 VSANIPVIQRFIEQLIENQQAYVAEDKSVYFDVSKCQNYGKL--QNISKEEWALQENEQ- 196 Query: 184 HKKNPADFILWK-RSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ ADF LWK + EP W S WG GRPGWHIECSA++ + G+ D H GGLDL Sbjct: 197 GKRSAADFALWKAKKAKYEPSWSSKWGGEGRPGWHIECSAIAGMFFGEELDFHAGGLDLR 256 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGG 299 FPHHENE AQ C + + N W+H G L+L G +KMSKS GN IT++E+L Sbjct: 257 FPHHENEEAQCCAHFKKNQWVNYWLHTGQLHLLGDQQKMSKSLGNTITVDEML------- 309 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 +S+ A R+A L+++Y + ++ Q + A L K+ Sbjct: 310 KSYTADEFRMACLLSNYNNAMPYSDQLMLTARQTLKKF 347 >gi|311739444|ref|ZP_07713279.1| cysteine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305260|gb|EFQ81328.1| cysteine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 415 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 206/397 (51%), Gaps = 42/397 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y++ + I + + MYVCG T YD H+G+A + FD++YR + Sbjct: 21 QLRLYDSANQTIAPVE-VAGDTATMYVCGITPYDSTHLGHAATYLTFDLIYRA--FLDAG 77 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V YV+NITD+DD + ERA ++ D + TS+ F D L+ P Sbjct: 78 KKVHYVQNITDVDDPLFERAERDG-----VDWRELGTSQ-IDLFRSDMELLSVFPPQDYI 131 Query: 124 RATNHIPQMIYLIQNIILHGHAY--------------EANNEIIFDTSSIPNYGSFSRRK 169 A + +++ ++Q ++ G AY EA +++ NY + R Sbjct: 132 GAMEAVDEVVEMVQKLLDAGAAYVVDDPEHPDIYASIEATERFGYES----NYSAEEMRT 187 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 ++ G P++ KKNP D ++W+ EP W+SP+G GRPGWHIECSA++++ LG Sbjct: 188 FFAERGGD--PDRPGKKNPLDALIWRAHREGEPAWDSPFGPGRPGWHIECSAIATNRLGS 245 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDI GGG DL FPHHE A + A +E+ A ++H G + L+G KMSKS GN + ++ Sbjct: 246 TFDIQGGGSDLKFPHHEFSAAHAEAALNVERMAQFYVHTGMIGLDGVKMSKSLGNLVFVH 305 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP 349 +L+ G IRL + HYR+ D++ + L A+ L+ W + G + Sbjct: 306 KLV------GAGEDPSAIRLGVFAGHYRDERDWSDEALDAAKRRLAAWREALAQPGSMAG 359 Query: 350 A------VLSALYNDLNTVSAIQALHKLARESTKNHD 380 A + +A+ NDL+T +A+ A+ + A E+ + D Sbjct: 360 AEGVVAKLRAAIANDLDTPAALAAVDEWA-EADRGTD 395 >gi|149186074|ref|ZP_01864388.1| cysteinyl-tRNA synthetase [Erythrobacter sp. SD-21] gi|148830105|gb|EDL48542.1| cysteinyl-tRNA synthetase [Erythrobacter sp. SD-21] Length = 482 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 148/477 (31%), Positives = 230/477 (48%), Gaps = 48/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R++ F + P R+Y CGPTVY++ HIGN R + DVL R L + + Sbjct: 6 LKLFNSLTREVETFTPVHPGEARVYTCGPTVYNYPHIGNMRAYVFADVLGRTLSWKGYD- 64 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +T++ NITD+ DD + E + +I I T+ + D L P Sbjct: 65 -LTHIINITDVGHLTDDADEGEDKMEKMAAEKAQSIWDIAKHYTEAYWADVKALNIRQPA 123 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT++I +MI + I H YE + + FD S+I +YG +R + E G R+ Sbjct: 124 KWSVATHYIDEMIEFAKGIA-DKHCYELESGLYFDVSTIEDYGKLAR-AVTEDGEG-RID 180 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K+N ADF +W+++ E W+SPWG+G PGWH+ECS M LG FDIH GG Sbjct: 181 TVEGKRNAADFAIWRKTPAGETRQMEWDSPWGKGAPGWHLECSVMGGKLLGFPFDIHTGG 240 Query: 238 LDLIFPHHENEIAQS---CCADRIEKTAN----IWIHNGFLNLEGRKMSKSNGNFITINE 290 +D HH NEIAQ+ CC + ++ N IW+HN FL KMSKS G F+ + Sbjct: 241 IDHREIHHPNEIAQNQAHCCTNGLDVAENSGARIWMHNNFLVERSGKMSKSAGEFLRLQL 300 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---WPQTSTSKGII 347 L++ + + R+ L HYR ++F+ + L A L + + Sbjct: 301 LID------KGYHPLAYRMMCLQAHYRSELEFSWEGLQAALTRLKRIVMQVERLEDDLAG 354 Query: 348 DPA----------VLSALYNDLNTVSAIQALHK-LARESTKNHDLLPIFNASAHILGI-- 394 DP+ +A+ +DLNT A+ AL + LA + + +LG+ Sbjct: 355 DPSHQKFAPMREKFAAAISDDLNTSVALVALEEALAVKKVDGSVKRAVVEDMDRVLGLNL 414 Query: 395 -EVCKEHLNKNISIA------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ++ +E+L +A IE + R K ++++D IR L +KG + D Sbjct: 415 FDLTRENLRIRPKVAKISESEIEAEILRRKEAKVAKDYANSDAIRASLAAKGVEVMD 471 >gi|296117896|ref|ZP_06836479.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969127|gb|EFG82369.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium ammoniagenes DSM 20306] Length = 420 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/420 (31%), Positives = 212/420 (50%), Gaps = 45/420 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++ + KI + ++ MYVCG T YD H+G+A + FDV+YR+L+ G K Sbjct: 19 LKLYDSADEKIKPVR-VEGDTATMYVCGITPYDSTHLGHAATYVTFDVIYRMLQDQ-GHK 76 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+NITD+DD + ERA + D + + F D +L P Sbjct: 77 -VHYVQNITDVDDPLFERAER--------DGVDWRELGESQVDLFRSDMEQLGVYPPQDY 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE------IIFDTSSIPNYGSFSRRKIDEQKMG 176 A I ++I L Q ++ +G AY ++ D +S Y S R+ E+ Sbjct: 128 IGAIESIDEVIDLTQKLLDNGAAYAVDDAKYPDVYASVDATSQFGYESNYDRETMEKFFA 187 Query: 177 TRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 R P++ KK+P D +LW+ + EP WESP+G GRPGWH+ECSA++++ LG F I Sbjct: 188 ERGGDPDREGKKDPLDALLWRAAREGEPSWESPFGAGRPGWHVECSAIATNRLGSSFLIQ 247 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL +PHHE A + +++ A ++H G + L+G KMSKS GN + +++L+E Sbjct: 248 GGGSDLKYPHHEYSAAHAEAGLGVDRMAEFYVHAGMIGLDGTKMSKSLGNLVFVHKLVE- 306 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------ 348 + A IRL + HYR D++ + L+ A L+ W +T+ ++ Sbjct: 307 -----QGAEASAIRLGLYAHHYRGDRDWSDEVLSTAVERLNTW-RTAVAETDDADASIDA 360 Query: 349 -----------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVC 397 A+ L NDL+TV A+ + + A++ T + A +LG+ + Sbjct: 361 AAAQQAAEETVQALREYLANDLDTVGALNVIDEWAKKPTTAEAAGVVATAVDGLLGVRIS 420 >gi|302344681|ref|YP_003809210.1| cysteine synthase [Desulfarculus baarsii DSM 2075] gi|301641294|gb|ADK86616.1| cysteine synthase [Desulfarculus baarsii DSM 2075] Length = 775 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 150/480 (31%), Positives = 233/480 (48%), Gaps = 63/480 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K +NTL R+I E + + P + +Y CGP++ +G R MI D+L R L E Sbjct: 309 LKFFNTLTRRIDELRPVRPGRVGIYACGPSLDGPPDLGLCRRMIFADLLRRYLELRGFE- 367 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V NI DIDD+ + + E + T++ + F +D L L + P+ Sbjct: 368 -VKLVVNIADIDDRTVNQCLAEGAEL------KEFTARWEKAFHEDMAALNVLPASDYPK 420 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 A+ HIP+MI + ++ AYE + F+ S PNYG S ++ + G V + Y Sbjct: 421 ASEHIPEMIEETRKLLAKDLAYEKLRSVYFNISRYPNYGQLSHVDLNAIQKGKTVDFDYY 480 Query: 184 HKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K+NP+DF L+KR++ E W +PWG RPGWH+EC+ MS+ +LG+ FDIH D Sbjct: 481 EKENPSDFTLFKRASLQELKAGVYWPTPWGNCRPGWHVECACMSAGHLGQPFDIHLASSD 540 Query: 240 LIFPHHENEIAQSCCADRI--EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 LIFPH +NEIA A+ + + AN+W+H+ + ++G+K ++ GN +++ ELLE Sbjct: 541 LIFPHGDNEIA---IAESLYGKPLANLWLHSEVVVVDGKKANRVQGNDVSLRELLEQ--- 594 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------- 350 G S A +R ML HYR + F ++L AE + + + PA Sbjct: 595 -GHSPQA--VRYWMLSQHYRRALRFAPEQLDLAERTVRRLNDFVARLRFLTPAPDDAQAE 651 Query: 351 ------------VLSALYNDLNTVSA-------IQALHKLARES----TKNHDLLPIFNA 387 A+ NDL A I+A+++LA + +L Sbjct: 652 DVDQLIYETRYRFQEAMDNDLGVAKAQGHIFAFIKAINRLAAGEGLTMAQIQKVLEFMQR 711 Query: 388 SAHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ +N + S AIE+LVQ+R F+ AD +R+QL G + D Sbjct: 712 LDSVLGV------MNFDGSSWDPAIEELVQKREQARADGDFALADRLREQLAEMGVQVAD 765 >gi|224531997|ref|ZP_03672629.1| cysteinyl-tRNA synthetase [Borrelia valaisiana VS116] gi|224511462|gb|EEF81868.1| cysteinyl-tRNA synthetase [Borrelia valaisiana VS116] Length = 480 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 157/494 (31%), Positives = 239/494 (48%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E D ++++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKVYNTRTKDFSELTNFD--DVKLYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F KD +L Sbjct: 60 -VNYAMNITDIGHLTGDFDDGEDKVAKTAREKGLTV------YEISEFFTEAFFKDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK-IDEQ 173 P A+ HIP MI +++ + Y +N + FDTS +YG + ID+ Sbjct: 113 NVTYPDKVLIASKHIPIMIEVVKILEEKKVTYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 +RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTFSRVDIDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGLGYPSWHLECAAMNLEYFKDK 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA C +K +I++H FL ++ KMSKS GNFITIN+ Sbjct: 233 LDIHLGGVDHIGVHHINEIAIVECFLN-KKWCDIFVHGEFLIMDYNKMSKSLGNFITIND 291 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKGI 346 L E +++ + R L +HYR + F++ L ++I ++++ S Sbjct: 292 LEE------QNFSSLDFRYLCLTSHYRNQLKFSLNNLQASKIARENMINRLSYFYASLNP 345 Query: 347 IDPAVLSA-LYN-------------------DLNTVSAIQALHKLARES----TKNHDLL 382 +D +L L N DLN + L ++ + L Sbjct: 346 VDLKILDKDLKNLSSNAEKEYYDSFVEKISFDLNVPQGLALLWEIIKSENLGFVSKLKLA 405 Query: 383 PIFNASAHI-LGIEVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 +F+ + L E+ K N ++ I ++ L++ER I K F AD IR KG Sbjct: 406 FVFDEIMSLNLKEEILKSLENHDVVIDDDMKTLIEERRIAKCEKNFKRADEIRDFFAKKG 465 Query: 440 FILEDYKNPDNGQR 453 F+L D K +R Sbjct: 466 FVLVDTKEGTKVKR 479 >gi|145492154|ref|XP_001432075.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399184|emb|CAK64678.1| unnamed protein product [Paramecium tetraurelia] Length = 672 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 33/345 (9%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMI---VF------DVLY 54 +K+ N+L+ ++ F I+ + Y CGPTVY +H+G+AR VF DV+ Sbjct: 25 LKLANSLKGSELVPFIPINGRQVNFYYCGPTVYSNSHLGHARQCYCNYVFRTYLGIDVIR 84 Query: 55 RLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 R LR Y+ ++ V NITDIDDKII A+ N T + F L Sbjct: 85 RTLRDYFNYDLLS-VMNITDIDDKIINGAK------SANQDFLEFTKVWEKDFFSAMEAL 137 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD--------TSSIPNYGSFS 166 P R ++++P+++ I+ II +G+AY++N + FD + P + Sbjct: 138 NIELPDVITRVSDYVPEIVTFIEKIIANGYAYDSNGSVYFDYFQFQIKLQHTYPKMRPET 197 Query: 167 RRKIDEQKMG-TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSH 225 + ++ G ++ ++ KK+P DF LWK S P EP W SPWG GRPGWHIECS M+S Sbjct: 198 NADLLQEGEGESQANKQSEKKSPNDFALWKASKPEEPKWPSPWGEGRPGWHIECSVMASA 257 Query: 226 YLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 LG D+H GG+DLIFPHH+N +AQ+ ++ N +IH G LN+ RKMSKS NF Sbjct: 258 ILGNPIDLHAGGIDLIFPHHDNSLAQAEACFNCDQWINYFIHLGHLNIADRKMSKSLKNF 317 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 +TI+E+L K++ R IRL + Y ++++ +++ +A Sbjct: 318 LTIDEVL--KRYTPRQ-----IRLNFAIHQYDAVMNYSEEQVEQA 355 >gi|216264257|ref|ZP_03436249.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 156a] gi|215980730|gb|EEC21537.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 156a] Length = 480 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 243/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E + N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K +I++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDIFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARGNLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSENLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|149920369|ref|ZP_01908839.1| cysteinyl-tRNA synthetase [Plesiocystis pacifica SIR-1] gi|149818811|gb|EDM78253.1| cysteinyl-tRNA synthetase [Plesiocystis pacifica SIR-1] Length = 537 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/342 (38%), Positives = 175/342 (51%), Gaps = 36/342 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY--YYG 62 + +YNT ++ F + P +R+Y CG TVY HIG+AR +DV R L Y Y+ Sbjct: 16 LHVYNTRTKRKEAFVSAQPRVVRIYTCGLTVYSDMHIGHARTYCFWDVFRRWLEYRGYH- 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDD+II+ AR++ + + + F +D L Sbjct: 75 ---VISVINYTDIDDRIIKDAREK------GEGTLDLAERVVASFRRDCRALKIKDYAVY 125 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG----TR 178 RAT+ + + I ++ ++ GHAY E+++D S YG S R ++ + G T Sbjct: 126 TRATDFVEEQIAAVKALVDKGHAYVVEGEVLYDVRSFERYGQLSGRSLEGMQEGASGRTD 185 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGW---ESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 E K+ ADF LWK S EP W E+ W GRPGWHIECSAMS+ LGK FD+HG Sbjct: 186 SAETSRKRFFADFTLWKPSKEGEPCWQTGEAEWPSGRPGWHIECSAMSTTTLGKNFDVHG 245 Query: 236 GGLDLIFPHHENEIAQS--CCADRIEKTANIWIHNG---FLNLEGR--KMSKSNGNFITI 288 GG+D +FPHHENE+AQS C N W+H LN EG+ KMSKS GN I+I Sbjct: 246 GGIDNLFPHHENEVAQSEPLCG---HPWVNYWMHPAHLQLLNEEGQPIKMSKSLGNVISI 302 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 +L+ W V THYR + F Q L EA Sbjct: 303 GDLVAKHGPDAARWYFGV-------THYRSSLAFNWQLLDEA 337 >gi|68535433|ref|YP_250138.1| cysteinyl-tRNA synthetase [Corynebacterium jeikeium K411] gi|260578233|ref|ZP_05846150.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium jeikeium ATCC 43734] gi|311740644|ref|ZP_07714471.1| cysteinyl-tRNA synthetase [Corynebacterium pseudogenitalium ATCC 33035] gi|123761918|sp|Q4JXD7|MSHC1_CORJK RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 1; Short=L-Cys:GlcN-Ins ligase 1; AltName: Full=Mycothiol ligase 1; Short=MSH ligase 1 gi|68263032|emb|CAI36520.1| cysS2 [Corynebacterium jeikeium K411] gi|258603633|gb|EEW16893.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium jeikeium ATCC 43734] gi|311304164|gb|EFQ80240.1| cysteinyl-tRNA synthetase [Corynebacterium pseudogenitalium ATCC 33035] Length = 404 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 29/387 (7%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+++T ++++ E +N + MYVCG T YD H+G+A + FD+ R L G Sbjct: 19 LKLFDTADQRVKEVDTTPDANGEVGMYVCGITPYDSTHLGHAATYLTFDLAQRQL-LANG 77 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K V Y +NITD+DD + ERA ++ D + TS+ F D L+ + P Sbjct: 78 HK-VHYAQNITDVDDPLFERAERDGV-----DWRELGTSQ-INLFRSDMEILSVIPPRDY 130 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIF---DTSSIPNYGSFSRRKIDEQKMGTRV 179 A + ++I ++Q ++ G AYE + I+ D + Y S R E+ R Sbjct: 131 IGAMESVDEVIAMVQQLLDAGAAYELDQGDIYASIDATEQFGYESNLDRATMEEYFAERG 190 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P++ K++P D ++W+ EP W+SP+G GRPGWH+ECSA++++ LG F I GGG Sbjct: 191 GDPDREGKRDPLDALIWRGHREGEPAWDSPFGPGRPGWHVECSAIATNRLGSHFAIQGGG 250 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHE A + A ++E+ A ++H G + L+G KMSKS GN + +++L E Sbjct: 251 SDLAFPHHEFSAAHAEAALKVERMAGHYVHAGMIALDGVKMSKSLGNLVFVHKLSEAGH- 309 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPA 350 IRLA+ HYRE DF+ L EAE L++W + + + ++D Sbjct: 310 -----DPSAIRLAVFAGHYREDRDFSDAILAEAEERLTRWREQLAGEVSEAEATEVVDK- 363 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK 377 + + L +DLNT A+ L A + + Sbjct: 364 LRAILADDLNTPEALSLLDGAAGDCNQ 390 >gi|225552408|ref|ZP_03773348.1| cysteinyl-tRNA synthetase [Borrelia sp. SV1] gi|225371406|gb|EEH00836.1| cysteinyl-tRNA synthetase [Borrelia sp. SV1] Length = 480 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 159/499 (31%), Positives = 244/499 (48%), Gaps = 72/499 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E + N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLIASKHIPIMIEVVKILEEKKNTYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIA-QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D I HH NEIA C D+ K ++++H FL ++ KMSKS GNFIT+ Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLDK--KWCDVFVHGEFLIMDYNKMSKSRGNFITVK 290 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSK 344 + LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 291 D-LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES- 342 Query: 345 GIIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH-- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 --LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVSQGLALLWEIIKSENLSFVS 400 Query: 380 --DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQ 434 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 401 KLRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDF 460 Query: 435 LESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 461 FAKKGFVLVDTKEGTKVKR 479 >gi|255325703|ref|ZP_05366800.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium tuberculostearicum SK141] gi|255297313|gb|EET76633.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium tuberculostearicum SK141] Length = 415 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 206/397 (51%), Gaps = 42/397 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y++ + I + + MYVCG T YD H+G+A + FD++YR + Sbjct: 21 QLRLYDSANQTIAPVE-VAGDTATMYVCGITPYDSTHLGHAATYLTFDLIYRA--FLDAG 77 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V YV+NITD+DD + ERA ++ D + TS+ F D L+ P Sbjct: 78 KKVHYVQNITDVDDPLFERAERDG-----VDWRELGTSQ-IDLFRSDMELLSVFPPQDYI 131 Query: 124 RATNHIPQMIYLIQNIILHGHAY--------------EANNEIIFDTSSIPNYGSFSRRK 169 A + +++ ++Q ++ G AY EA +++ NY + R Sbjct: 132 GAMEAVDEIVEMVQKLLDAGAAYVVDDPEHPDIYASIEATERFGYES----NYSAEEMRT 187 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 ++ G P++ KKNP D ++W+ EP W+SP+G GRPGWHIECSA++++ LG Sbjct: 188 FFAERGGD--PDRPGKKNPLDALIWRAHREGEPAWDSPFGPGRPGWHIECSAIATNRLGS 245 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 FDI GGG DL FPHHE A + A +E+ A ++H G + L+G KMSKS GN + ++ Sbjct: 246 TFDIQGGGSDLKFPHHEFSAAHAEAALNVERMAQFYVHTGMIGLDGVKMSKSLGNLVFVH 305 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP 349 +L+ G IRL + HYR+ D++ + L A+ L+ W + G + Sbjct: 306 KLV------GAGEDPSAIRLGVFAGHYRDERDWSDEVLDAAKRRLAAWREALAQPGSMAG 359 Query: 350 A------VLSALYNDLNTVSAIQALHKLARESTKNHD 380 A + +A+ NDL+T +A+ A+ + A E+ + D Sbjct: 360 AEGVVAKLRAAIANDLDTPAALAAVDEWA-EADRGTD 395 >gi|290977210|ref|XP_002671331.1| predicted protein [Naegleria gruberi] gi|284084899|gb|EFC38587.1| predicted protein [Naegleria gruberi] Length = 416 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 176/348 (50%), Gaps = 37/348 (10%) Query: 5 IKIYNTLERKITEFQAI----DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + +YNTL + + D I Y CGPTVYD H+G+AR + D++YR+L +Y Sbjct: 53 VALYNTLSKSKVSLKIAKRLSDVPVINWYSCGPTVYDDTHLGHARNYVCLDIIYRILAHY 112 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V +V ITD+DDKI++RA + + S I+ K F++D +L + P Sbjct: 113 FNYP-VLHVMGITDVDDKILKRAAE------LGKQPSEISRKYEFDFIEDMKKLNVIQPY 165 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN----YGSFSRRKIDEQKM 175 R T HI ++ ++ + +G Y AN + FD+ YG S E Sbjct: 166 VYTRVTEHIEEIKQFVEEMEKNGFTYTTANGGVYFDSKKFEQNDHYYGKLSPNNAQESIQ 225 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL-----GKV 230 + + KK+P DF LWK ++ GWES WG GRPGWHIECSAM H Sbjct: 226 QEHIEHREEKKDPRDFALWKFTSRDYLGWESKWGYGRPGWHIECSAMIDHIFNNKSGAAT 285 Query: 231 FDIHGGGLDLIFPHHENEIAQS--------CCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 DIH GG+DL FPHH NEIAQS CC+ R N +IH G L+++G KMSKS Sbjct: 286 IDIHSGGIDLAFPHHNNEIAQSEAKNHAHFCCS-RETNWCNYFIHVGHLHIKGLKMSKSL 344 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 NFITI + L + + R+ L+ Y + +D+ + EA Sbjct: 345 KNFITIKDFL-------KRYSPDQFRIFCLLHQYNQTLDYNEDAIGEA 385 >gi|227503624|ref|ZP_03933673.1| cysteinyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] gi|227075660|gb|EEI13623.1| cysteinyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] Length = 412 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 40/365 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD++YR ++ K V Y +NITD+DD + ERA ++ Sbjct: 41 MYVCGITPYDSTHLGHAATYLTFDLIYR--QFLDAGKKVNYAQNITDVDDPLFERAERDG 98 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 D + TS+ F D L+ + P H A + +++ ++Q ++ +G AY Sbjct: 99 V-----DWRELGTSQ-IDLFRSDMELLSVIPPQHFIGAMEAVDEIVDMVQKLLDNGAAYV 152 Query: 147 -------------EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193 +A E +++ NY R+ ++ G P++ KK+P D ++ Sbjct: 153 VDDPEYPDVYASIDATEEFGYES----NYSMEQMREFFAERGGD--PDRPGKKHPMDALI 206 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ EP W+SP+G GRPGWHIECSA++++YLG FDI GGG DL FPHHE A + Sbjct: 207 WRAHREGEPAWKSPFGSGRPGWHIECSAIATNYLGSTFDIQGGGSDLKFPHHEFSAAHAE 266 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 A +++ A +++ G + L+G KMSKS GN + +++L+E + IRL + Sbjct: 267 AALGVDRMAQFYVYTGMIGLDGVKMSKSLGNLVFVHKLVEQGE------DPSAIRLGVFS 320 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------VLSALYNDLNTVSAIQA 367 HYR D++ + L +A+ L+ W + G + A + AL +DL+T +A++A Sbjct: 321 GHYRAERDWSDEVLDQAKARLATWRTALEAPGALSAAEDAVAGLRQALADDLDTPAALRA 380 Query: 368 LHKLA 372 + A Sbjct: 381 IDNWA 385 >gi|312149265|gb|ADQ29336.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi N40] Length = 480 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 242/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E + N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKGYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K +I++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDIFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARGNLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSENLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|226320825|ref|ZP_03796378.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 29805] gi|226233767|gb|EEH32495.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 29805] Length = 480 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 158/498 (31%), Positives = 244/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E + N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKNTYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K ++++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|308271740|emb|CBX28348.1| Cysteinyl-tRNA synthetase [uncultured Desulfobacterium sp.] Length = 761 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 150/480 (31%), Positives = 241/480 (50%), Gaps = 53/480 (11%) Query: 1 MKKKIKI--YNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR 58 +K+KI + +NT+ R F+ I P +Y CGPTV+D H G R + D+L R L Sbjct: 300 VKEKINLMLFNTITRSKEPFEPIHPGKASVYSCGPTVHDRMHPGECRRFVFSDLLCRYLE 359 Query: 59 YYYGEKCVTYVRNITDIDDKII---ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLA 115 + V ++ NITD+DDK I E+A E +S T K F +D L Sbjct: 360 FR--GYSVKHIMNITDLDDKTINGSEKAGLE---------LSEFTEKYINLFKEDLNLLG 408 Query: 116 CLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 + P+A+ HI M+ L + ++ G+AYE + FD S +YG S I++ ++ Sbjct: 409 IKPAENYPKASEHIEDMVLLAEKLVKKGYAYEKLRSLYFDISRFSDYGKLSGIDINKIRI 468 Query: 176 GTRVP-EKYHKKNPADFILWKRS--TPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKV 230 G V ++Y K NP DF L KR+ + + G + WG RP WHI+C+AM+ YLG+ Sbjct: 469 GATVDLDEYEKDNPRDFTLMKRAKLSELRRGIYTATDWGNVRPSWHIQCAAMAMKYLGES 528 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIH +LIFPHHENEIA S A + A W+H + ++G+K+ + G + +++ Sbjct: 529 FDIHTSSRELIFPHHENEIAIS-KALTGKALAKFWMHCDRVLVDGKKLDEIKGR-LCVSD 586 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------- 336 L+ + GR IR ++ THYR+PI F+ +RL +A L + Sbjct: 587 LINM-GYSGRE-----IRYWLISTHYRKPIVFSNKRLEDARKSLKRLDTCVHALLDIKAG 640 Query: 337 --WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARE---STKNHDLLP-----IFN 386 +P+ I + A+ +DLN +A+ ++ ++ R+ +++ + P I + Sbjct: 641 EPYPEIDQLLYDIKNGFIGAMDDDLNISAALSSIFRIVRKINVLSRDKKIDPAGAKKILD 700 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I + + N +++L++ER K + +AD IRK+LES G + D K Sbjct: 701 AFKDIDSVLNVFDFGNCYFDPEVKRLLEERDRARTEKNWGAADDIRKKLESMGVAIRDRK 760 >gi|300121951|emb|CBK22525.2| Cysteinyl-tRNA synthetase [Blastocystis hominis] Length = 593 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 170/310 (54%), Gaps = 26/310 (8%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 Y CGPTVYD +H+G+AR + D+L R+L +G + IT+IDDKII ++RQ Sbjct: 43 YSCGPTVYDSSHVGHARTYVQIDLLQRILSRRFGMN-IHSAMGITNIDDKIINKSRQ--T 99 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 IP + I S+ ++F+ D RL P R ++ IP+++ I+ + G AY+ Sbjct: 100 MIPWQE----IASRYEEEFINDMQRLNVKMPMSVVRVSDMIPEIVDYIRVLEDKGIAYKT 155 Query: 149 NNEIIFDT-SSIPNYGSF--SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 ++ I FDT SS+ Y S ++ Q + PEK H P DF LWKR+ ++ W+ Sbjct: 156 SSGIYFDTQSSLYKYEKLVPSISDVESQSRLAQDPEKRH---PRDFALWKRADDIDYSWD 212 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 SPWGRGRPGWHIECS G D+H GG+DL FPHH NEIAQ C W Sbjct: 213 SPWGRGRPGWHIECSVNCHSLFGDHLDVHAGGIDLRFPHHCNEIAQ--CEAYSGGGGGAW 270 Query: 266 ----IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 +H G + +EGRKMSKS NFITI++LL+T + A R+ ++ HY I Sbjct: 271 CDMMLHIGHIFIEGRKMSKSLKNFITIDQLLQT-------YSANDFRMFCMLNHYSARIQ 323 Query: 322 FTVQRLTEAE 331 L EA+ Sbjct: 324 LDDNGLVEAQ 333 >gi|291242855|ref|XP_002741321.1| PREDICTED: cysteinyl-tRNA synthetase 2, mitochondrial-like, partial [Saccoglossus kowalevskii] Length = 424 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/337 (37%), Positives = 176/337 (52%), Gaps = 24/337 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R + + Y+CGPTVYD AHIG+A + FDVL R+L ++ Sbjct: 75 VDVYNSLTRTKVPLILQKDNIAKWYMCGPTVYDSAHIGHASCYVRFDVLRRILTEFFDID 134 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V +T+IDDKII RAR++ + I + +F D L L T R Sbjct: 135 -VVMVMGVTNIDDKIINRAREK--DVDFKQLARIYEN----EFASDMQALKVLPATVYTR 187 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSS--IPNYGSFSRRKIDEQKMGTRVPE 181 T++IPQ++ +QNII G AY + + FD + I Y + PE Sbjct: 188 VTDYIPQILVFVQNIIDTGCAYSTPSGSVYFDVEAFGIERYAKLMPHVRHDHGRHIVEPE 247 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWG--RGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K H + DF LWK + P EP W SPWG +GRPGWHIECS MSS G DIH GG+D Sbjct: 248 KRHLR---DFALWKAAKPGEPWWSSPWGQGKGRPGWHIECSTMSSAIFGNALDIHTGGID 304 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHH+NEIAQ + + N ++H+G L+L + KMSKS GN IT+ + L+ Sbjct: 305 LAFPHHDNEIAQCEACHQTHQWTNYFLHSGILHLKDDAEKMSKSIGNTITVQDYLQKHT- 363 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 A R+ L+T Y I++ + +A +L Sbjct: 364 ------ANQFRMICLLTKYSHNIEYCEDIVMQASSIL 394 >gi|226360027|ref|YP_002777805.1| cysteinyl-tRNA synthetase [Rhodococcus opacus B4] gi|310947211|sp|C1ASS8|MSHC_RHOOB RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|226238512|dbj|BAH48860.1| cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC [Rhodococcus opacus B4] Length = 415 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 203/390 (52%), Gaps = 35/390 (8%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++T +R++ + + P MYVCG T YD H+G+A + FD++ R+ R Sbjct: 19 LRLFDTADRQV---RPVTPGRTATMYVCGITPYDATHLGHAATYLTFDLVNRIWRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD + ERA ++ + ++ + T F +D L L P Sbjct: 74 HDVHYVQNVTDVDDPLFERANRD------GEDWVVLGMRETALFREDMEALRVLPPRDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKID---EQ 173 A I ++I +++ + G AY ++ ++ F + +G + R +D + Sbjct: 128 GAVESIGEVIEMVEKFVASGAAYVVDDPEFPDVYFRADATEQFGYESGYDRATMDTFFAE 187 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G P++ K+NP D ++W+ + P EP W SP+G GRPGWHIECSA++ + +G FD+ Sbjct: 188 RGGD--PDRPGKQNPLDALVWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRIGSGFDV 245 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + A + A ++H G + L+G KMSKS GN + +++L Sbjct: 246 QGGGSDLIFPHHEYSAAHAESATGDRRFARHYVHTGMIGLDGEKMSKSRGNLVFVSKLR- 304 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGIID-- 348 G IRL +L HYR+ +T Q L +A L W + +++ D Sbjct: 305 -----GEGVDPAAIRLGLLSGHYRQDRPWTEQVLADAHTRLQLWKDAAALESAQSATDTI 359 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKN 378 + L +DL+T A+ AL AR + N Sbjct: 360 ARLRQHLADDLDTPKALDALDGWARRALDN 389 >gi|313665040|ref|YP_004046911.1| cysteine--tRNA ligase [Mycoplasma leachii PG50] gi|312949642|gb|ADR24238.1| cysteine--tRNA ligase [Mycoplasma leachii PG50] Length = 441 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 144/441 (32%), Positives = 214/441 (48%), Gaps = 43/441 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y CGPTVY++ HIGNARP+I+ DVL R L+ + Y++NITDIDDKII +A Sbjct: 19 INLYCCGPTVYNYIHIGNARPVILVDVLIRYLK--SRNIKINYLQNITDIDDKIILKALD 76 Query: 86 EHPSIPINDAISI-ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 N+ + I+ K T+ ++ D L P + + +MI I++++ Sbjct: 77 -------NNLTELEISQKYTKAYLNDLESLNINQPDKIILISEKMNEMIKFIKDLVDIKA 129 Query: 145 AYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 AYE ++ F+ N Y S K+DE G R+ K DF LWK+ T + Sbjct: 130 AYELEGDVYFNIKKYQNEYCKLSGYKLDELISGKRIEIDSKKDYSLDFSLWKK-TEIGIK 188 Query: 204 WESPWGRGRPGWHIECSAMSSHYLG-KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W+S +G GRPGWH EC + Y + DIH GG+DL FPHHENE Q + E A Sbjct: 189 WDSVFGLGRPGWHTECVLLIDEYFNHQTIDIHVGGIDLKFPHHENERIQFIAKNNKE-LA 247 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 NIW+HNG L + KMSKS GN I + + + + + +R L T+Y +P++ Sbjct: 248 NIWLHNGHLQINNEKMSKSLGNVILVKDFI-------KKYNKNTLRWIFLTTNYTQPLNI 300 Query: 323 TVQRLTEAEILLSKWPQTS--TSKGIIDPAVLSALYN--------------DLNTVSAIQ 366 + + +A K S T + II + L N DLNT + Sbjct: 301 SDDLIYQANKFFEKLTNLSKKTIQFIIKNDLEIELINQSEYIDQFNSYMDDDLNTSLVLS 360 Query: 367 ALHKLARESTKN------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 + L ++ KN + + ++ ++IL + K N N +KL + L+ Sbjct: 361 LIDSLIKQINKNILDNKFENFNLLISSLSYILDVLGFKNVFNYNFKKETKKLFLKWQQLV 420 Query: 421 KMKKFSSADYIRKQLESKGFI 441 K K+F AD IRK L +G + Sbjct: 421 KNKEFDKADLIRKDLIEQGIL 441 >gi|221218126|ref|ZP_03589592.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 72a] gi|221192074|gb|EEE18295.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 72a] Length = 480 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 158/498 (31%), Positives = 243/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E + N+++Y CGPTVY++AHIGN R + D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYVFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K ++++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSENLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|86741333|ref|YP_481733.1| cysteinyl-tRNA synthetase [Frankia sp. CcI3] gi|123723762|sp|Q2J9N8|MSHC_FRASC RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|86568195|gb|ABD12004.1| cysteinyl-tRNA synthetase [Frankia sp. CcI3] Length = 464 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 198/380 (52%), Gaps = 35/380 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K ++I++T + E R+YVCG T YD H+G+A + +D+ R+LR Sbjct: 41 KPLRIFDTATSSVRELAPA--VTARLYVCGITPYDATHLGHAFTYLTYDLAQRVLRD--A 96 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAIS--IITSKNTQQFVKDTTRLACLAPT 120 V YV+N+TD+DD ++ERA + D + + + F +D T L LAP Sbjct: 97 GHHVHYVQNVTDVDDPLLERATR--------DGLDWRALADREIDLFREDMTALRMLAPD 148 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK------IDEQK 174 IP ++ ++ ++ G AY+ ++++ F ++ P +G S I ++ Sbjct: 149 AYVGVVEAIPMIVDMVVELVDRGAAYQVDDDLYFSIATAPAFGEISHLSRAEMLAICAER 208 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P + KK+P D +LW+ P EP W SP+G GRPGWHIECSA++ HYLG V DI Sbjct: 209 GGD--PRRTGKKDPLDPLLWRAHRPGEPSWPSPFGPGRPGWHIECSAIARHYLGGVIDIQ 266 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE A + A I A ++H ++L+G KMSKS GN ++ L Sbjct: 267 GGGTDLSFPHHECSAAHAEVAAGIRPFARSYVHTAMVSLDGHKMSKSRGNLEFVSRL--- 323 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 ++ G PA +RLA+L + E ++T L +A +++W P + G++ Sbjct: 324 RRAGVD--PA-ALRLALLDHRHTEDWEWTPGLLDDAVDRMNRWRAAVALPTGPDAMGLL- 379 Query: 349 PAVLSALYNDLNTVSAIQAL 368 AV L +DL+ A+ A+ Sbjct: 380 AAVRERLADDLDAPGAVAAV 399 >gi|239940119|ref|ZP_04692056.1| cysteinyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] gi|239986608|ref|ZP_04707272.1| cysteinyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379] gi|291443551|ref|ZP_06582941.1| cysteinyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] gi|291346498|gb|EFE73402.1| cysteinyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] Length = 409 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 206/385 (53%), Gaps = 36/385 (9%) Query: 3 KKIKIYNTLER-KITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++I++T +IT +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGRIT----LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WL 70 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 ++ V YV+N+TD+DD ++ERA ++ + + + T F +D T L L P Sbjct: 71 DTKRQVHYVQNVTDVDDPLLERAVRD------GQDWTELAERETALFREDMTALRMLPPR 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQK 174 H A IP ++ L++ + G AY+ ++ F + P++G S R + ++ Sbjct: 125 HYIGAVEAIPGIVPLVERLRDAGAAYDLEGDVYFSVDADPHFGEVSGLDAAAMRLLSAER 184 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDI 233 G PE+ KKNP D +LW + P EP W+ + G GRPGWHIEC A++ +LG FDI Sbjct: 185 GGD--PERPGKKNPLDPMLWMAARPGEPSWDGASLGDGRPGWHIECVAIALDHLGMGFDI 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 243 QGGGSDLAFPHHEMGASHAQALTGEHPFAKAYVHAGMVGLDGEKMSKSRGNLVFVSALRR 302 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGII 347 PA IRLA+L HYR ++T Q L +A L++W P ++ ++ Sbjct: 303 DGVD-----PA-AIRLALLSRHYRSDWEWTDQVLADAVERLARWRAAVSRPDGPSADALV 356 Query: 348 DPAVLSALYNDLNTVSAIQALHKLA 372 + V AL +DL++ +A+ A+ + A Sbjct: 357 E-QVREALADDLDSPAALAAVDRWA 380 >gi|110004174|emb|CAK98512.1| probable cysteinyl-trna synthetase protein [Spiroplasma citri] Length = 445 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 176/336 (52%), Gaps = 30/336 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R T++ NI Y CGPTVY++ HIGNAR +I D+L L++ E Sbjct: 1 MKLYNTLTRNFTDYSQTKKINI--YGCGPTVYNYIHIGNARAIITVDLLVSFLQFQQIE- 57 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII +A EH + I + F +D L PT R Sbjct: 58 -VNYIQNYTDIDDKIIAKAAAEHKT------EQEIAEFYIKAFEEDVFNLNVRTPTKWVR 110 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKY 183 T+H+ ++ IQ ++ AYE N + FD + YG + +KI E + R+ Sbjct: 111 VTDHVKDIVTFIQKLVKINAAYEVNGSVYFDIAKYQTQYGQLANKKISELEANARIEHDA 170 Query: 184 HKKNPADFILWKRSTPMEPGWESPW-------GRGRPGWHIECSAMSSHYLGK-VFDIHG 235 +K + DF LWK++T G P+ +GRPGWH EC+ + + K DIH Sbjct: 171 NKHSQYDFALWKQTT---EGISFPFYDQKGKLYQGRPGWHTECAVLIDKFFHKETIDIHA 227 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL+FPHHENE Q + E A IW+HNG LN+ +KMSKS N I + + + Sbjct: 228 GGIDLVFPHHENERIQFFAKNNKE-IAKIWMHNGHLNVADKKMSKSLNNTILVRDFI--- 283 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 + + A +R + T+Y +P++ T + A+ Sbjct: 284 ----KLYGANTLRYLLYATNYTQPLNVTETLIISAQ 315 >gi|195941732|ref|ZP_03087114.1| cysteinyl-tRNA synthetase (cysS) [Borrelia burgdorferi 80a] Length = 480 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 158/498 (31%), Positives = 243/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E + N+++Y CGPTVY++AHIGN R + D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYVFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K ++++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARGNLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|218249402|ref|YP_002375106.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi ZS7] gi|223888983|ref|ZP_03623574.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 64b] gi|224533521|ref|ZP_03674110.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a] gi|226321905|ref|ZP_03797431.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi Bol26] gi|226735049|sp|B7J2G1|SYC_BORBZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218164590|gb|ACK74651.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi ZS7] gi|223885799|gb|EEF56898.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 64b] gi|224513194|gb|EEF83556.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a] gi|226233094|gb|EEH31847.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi Bol26] gi|312148140|gb|ADQ30799.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi JD1] Length = 480 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 159/499 (31%), Positives = 242/499 (48%), Gaps = 72/499 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E + N+++Y CGPTVY++AHIGN R + D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYVFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDT 232 Query: 231 FDIHGGGLDLIFPHHENEIA-QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 DIH GG+D I HH NEIA C D K ++++H FL ++ KMSKS GNFIT+ Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLDN--KWCDVFVHGEFLIMDYNKMSKSRGNFITVK 290 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSK 344 + LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 291 D-LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES- 342 Query: 345 GIIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH-- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 --LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSENLSFVS 400 Query: 380 --DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQ 434 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 401 KLRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDF 460 Query: 435 LESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 461 FAKKGFVLVDTKEGTKVKR 479 >gi|225549500|ref|ZP_03770466.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 118a] gi|225369777|gb|EEG99224.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi 118a] Length = 480 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 158/498 (31%), Positives = 243/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R +E + N+++Y CGPTVY++AHIGN R + D+L + LR+ G K Sbjct: 3 LKLYNTRTRDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYVFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K ++++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNIAQGLALLWEIIKSENLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|118617863|ref|YP_906195.1| cysteinyl-tRNA synthetase [Mycobacterium ulcerans Agy99] gi|310947204|sp|A0PQV5|MSHC_MYCUA RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|118569973|gb|ABL04724.1| cysteinyl-tRNA synthetase, MshC [Mycobacterium ulcerans Agy99] Length = 411 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 136/415 (32%), Positives = 215/415 (51%), Gaps = 39/415 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++++Y+T +R++ + + P N MYVCG T YD H+G+A + FD+++RL Sbjct: 16 EPELRLYDTADRQV---RPVAPGNTATMYVCGITPYDATHLGHAATYLAFDLIHRLWLDL 72 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V YV+N+TD+DD + ERA ++ + D + ++ F +D L L+P Sbjct: 73 GHE--VRYVQNVTDVDDPLFERADRD--GVDWRD----LAAQEVALFREDMAALRVLSPH 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSRRKID------ 171 AT + ++I L++ ++ G AY + E + + + + +G S D Sbjct: 125 DYVGATEAVAEIIELVEKLLASGAAYVLDGEHPDVYYRSDATLQFGYESGYDRDTMLGLF 184 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 EQ+ G P + K + D +LW+ + P EP W SP+G GRPGWHIEC+A++ +G Sbjct: 185 EQRGGD--PGRPGKNDALDALLWRAARPGEPSWPSPFGPGRPGWHIECAAIALSRVGSGL 242 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 D+ GGG DLIFPHHE A + C ++ A ++H G + +G KMSKS GN + ++ L Sbjct: 243 DVQGGGSDLIFPHHEFTAAHAECVTGEQRFARHYVHAGMIGWDGHKMSKSRGNLVLVSGL 302 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 PA +RL +L HYR ++ Q L EA L +W +T D A Sbjct: 303 RAEGVN-----PA-AVRLGLLAGHYRADRFWSQQVLDEAVGRLQRWRAATTLPAGPDAAA 356 Query: 352 LSA-----LYNDLNTVSAIQALHKLARESTK--NHD-LLPIFNASA--HILGIEV 396 + A L +DLNT AI AL A ++ HD + P AS +LG+++ Sbjct: 357 VVARVRQYLADDLNTPKAIAALDGWATDALDYGGHDEVAPRLVASTIDALLGVDL 411 >gi|119953383|ref|YP_945592.1| cysteinyl-tRNA synthetase [Borrelia turicatae 91E135] gi|254765179|sp|A1R030|SYC_BORT9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119862154|gb|AAX17922.1| cysteinyl-tRNA synthetase [Borrelia turicatae 91E135] Length = 481 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 162/508 (31%), Positives = 246/508 (48%), Gaps = 86/508 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL---YRLLRYYY 61 +++YNT + ++E + + S+I++Y CGPTVY++AHIGN R I D+L RLL+Y Sbjct: 3 LRLYNTKTKSLSEVK--NFSDIKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKY-- 58 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 V Y NITDI +DK+++ AR+ ++ I+ T+ F D Sbjct: 59 ---NVNYAMNITDIGHLTGEFDEGEDKVVKAARERGLTVYE------ISRFFTEAFFCDC 109 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID 171 +L + P A+ +I MI +I+ + +G Y N + FDTS +YG + ++ Sbjct: 110 EKLNIVRPDKVLIASEYIASMIEVIKVLEQNGFTYFVNGNVYFDTSLFKSYGQMAGINLN 169 Query: 172 EQKMGT--RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHY 226 + + + RV KKN +DF+LW ++ E W+SPWG G P WH+EC+AM+ Sbjct: 170 DFEFSSVSRVEVDPSKKNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLDC 229 Query: 227 LGKVFDIHGGGLDLIFPHHENEIA-QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 DIH GG+D I HH NEIA C +R+ +I++H FL +E KMSKSN NF Sbjct: 230 FRSTLDIHLGGVDHIGVHHINEIAIAECYLNRM--WCDIFVHGEFLIMEDEKMSKSNNNF 287 Query: 286 ITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQT 340 ITI + LET F +P+ R L HYR + FT L ++ +L+K Sbjct: 288 ITIQD-LETNGF------SPLDFRYFCLTAHYRTQLKFTFNNLRACKVARKNMLNKLTAV 340 Query: 341 STSKGIIDPAVLSALYNDLNTV--------------------------------SAIQAL 368 +S D +LS Y ++ +V + AL Sbjct: 341 FSSLNQFDLLLLSKNYENIESVLEKRYYDSFLEKIAFDLSIPQALALLWDIIKDDNLSAL 400 Query: 369 HKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 KL R + K ++L + IE K+ + NI A+ L++ER + K F A Sbjct: 401 SKL-RLTFKFDEVLSLGLKEGVFREIE--KDRI--NIDDAMNSLLEERRLAKIRKDFKRA 455 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTR 456 D IR+ SKGF+L D + G ++ R Sbjct: 456 DEIREYFYSKGFVLID---TEEGTKVKR 480 >gi|256376329|ref|YP_003099989.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Actinosynnema mirum DSM 43827] gi|310947170|sp|C6WIA0|MSHC_ACTMD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|255920632|gb|ACU36143.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Actinosynnema mirum DSM 43827] Length = 412 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 33/388 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++++T ++ D R+YVCG T YD H+G+A + FD++ R+ + Sbjct: 17 RPLRLHDTATGEVRPTAPGD--TARLYVCGITPYDATHLGHAATYLAFDLVQRV--WLDN 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N+TD+DD ++ERA ++ D ++ + T F +D L LAP Sbjct: 73 GHDVHYVQNVTDVDDPLLERAARD------QDDWVVLAMRETALFREDMEALRVLAPREY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYG---SFSRR---KIDE 172 A IP ++ +I+ ++ G AY +++ + F + PN+G ++ R ++ Sbjct: 127 VGAVESIPGIVDMIEKLLASGAAYRLDDDEYPDVYFPHDATPNFGYESNYDRETMLRLFA 186 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K++P D +LW+ + P EP WE+ G GRPGWHIECS ++ L FD Sbjct: 187 ERGGD--PDRPGKRDPLDALLWRMARPGEPSWETSIGTGRPGWHIECSHIALANLDTPFD 244 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 + GGG DL+FPHHE A + A + H G + L+G KMSKS GN + +++L Sbjct: 245 LQGGGSDLVFPHHEYSAAHAEALTGQHPFARHYAHAGMIGLDGEKMSKSRGNLVFVSKLR 304 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--SKGIIDPA 350 T G VIRLA+ HYRE +T + EA L+ W + S +D Sbjct: 305 STGVDPG------VIRLALFAGHYREDRPWTDELFAEAGTRLALWRSAADLESGPSVDDV 358 Query: 351 VLSA---LYNDLNTVSAIQALHKLARES 375 V L NDL+T A+ AL ARE+ Sbjct: 359 VARVREHLGNDLDTPKALAALDAWAREA 386 >gi|325185588|emb|CCA20071.1| cysteinyltRNA synthetase putative [Albugo laibachii Nc14] Length = 656 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 221/459 (48%), Gaps = 93/459 (20%) Query: 22 DPSNIRM-YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTY--VRNITDIDDK 78 D S IR Y CGPTVYD AH+G+AR + D++ R++ +G +++ V +TDIDDK Sbjct: 53 DTSCIRKWYACGPTVYDRAHLGHARAYVSQDIIRRIIERQFG---ISFFLVMGVTDIDDK 109 Query: 79 IIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQN 138 II+RA++ + + ++ +Q F D RL P R + H+ ++I I+ Sbjct: 110 IIQRAKERQIHY-----LELARAEESQ-FFYDLDRLGVRRPHAVTRVSEHVEEIIRFIER 163 Query: 139 IILHGHAYEANN--EIIFDTSSI-PNYGSFSRRKID-EQKMGTRVPEKYH------KKNP 188 I+L+G AY A++ + FDT + YG K+D Q E + KKNP Sbjct: 164 IVLNGFAYIASDVSGVYFDTEQLGTEYG-----KLDPSQGSSVEAVELMYESKDSIKKNP 218 Query: 189 ADFILWK--RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 DF+LWK + EP WESPWG GRPGWHIECSAM + LG D+H GG+DL FPHH Sbjct: 219 KDFVLWKTVKEPQNEPCWESPWGLGRPGWHIECSAMIHYVLGDKIDLHTGGIDLRFPHHN 278 Query: 247 NEIAQS----------CCADRIEKTANIW----IHNGFLNLEGRKMSKSNGNFITINELL 292 NEIAQS CC+ + + W +H G L ++G+KMSKS NF TI L Sbjct: 279 NEIAQSEAHNYPQNKTCCS--VHQINEPWCRHFLHFGHLYIQGQKMSKSLKNFTTIEAFL 336 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------- 337 E A R+ L YR I ++ +R+ +A + K Sbjct: 337 EKH-------TADQFRVFCLQYKYRSNIHYSSERMRDAAAFIDKLCNFFRNVEAYSSHES 389 Query: 338 PQTSTSKGIIDPAVLSALY-----------NDLNTVSAIQALHKLARESTKNHDLLPIFN 386 + S +D +L AL+ +D +T SA+Q + K+ S N LL Sbjct: 390 SEASKKCTDLDLEILKALFHAKERVSICLADDFDTPSALQHISKMV--SRANEYLL---- 443 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKF 425 +EH I +AI + V + L L M++ Sbjct: 444 ---------TRQEHNPIEIRMAIAQYVLDVLELFGMRQL 473 >gi|300786807|ref|YP_003767098.1| cysteinyl-tRNA synthetase [Amycolatopsis mediterranei U32] gi|299796321|gb|ADJ46696.1| cysteinyl-tRNA synthetase [Amycolatopsis mediterranei U32] Length = 412 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 208/393 (52%), Gaps = 36/393 (9%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + RMYVCG T YD H+G+A + FD++ R+ R + V YV+N+TDID+ ++ERA Sbjct: 36 ATARMYVCGITPYDATHLGHAATYLAFDLVNRIWRDNGHD--VHYVQNVTDIDEPLLERA 93 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 ++ D + ++ + T F +D T L + P A IP+++ +I ++ +G Sbjct: 94 ARDQ-----GDWV-VLGMRETALFREDMTALRVIPPRQFVGAVESIPEIVEVIAKLLANG 147 Query: 144 HAYEANN----EIIFDTSSI------PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193 AY A + +I FD ++ NY + + K ++ G P + K++P D +L Sbjct: 148 SAYRAGDPEFPDIYFDHTATGRFGYESNYDAETMAKFFAERGGD--PGRAGKRHPLDALL 205 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ + EP WES G GRPGWHIECSA++ + LG FD+ GGG DLIFPHHE A + Sbjct: 206 WRVAREGEPSWESELGPGRPGWHIECSAIAVNRLGLGFDLQGGGSDLIFPHHEYSAAHAE 265 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 + + A ++H G + L+G KMSKS GN + ++ L + G IRLA+ Sbjct: 266 AVAKDGRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRADQVDPG------AIRLALFA 319 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQT---STSKGIIDPA--VLSALYNDLNTVSAIQAL 368 HYR+ +T + LT+AE L++W + +T D + L ++L+T A+ A+ Sbjct: 320 GHYRDDRPWTDRLLTDAETRLARWREAVALATGPAAEDTVTRLRDHLSDNLDTPKALAAI 379 Query: 369 HKLARESTKNHDLLP-----IFNASAHILGIEV 396 A E+ + P I +A +LGI + Sbjct: 380 DAWANEALRRDGTDPTAPGLIRDAVDALLGIAL 412 >gi|15594944|ref|NP_212733.1| cysteinyl-tRNA synthetase [Borrelia burgdorferi B31] gi|224532694|ref|ZP_03673311.1| cysteine--tRNA ligase [Borrelia burgdorferi WI91-23] gi|6831681|sp|O51545|SYC_BORBU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|2688519|gb|AAC66952.1| cysteinyl-tRNA synthetase (cysS) [Borrelia burgdorferi B31] gi|224512312|gb|EEF82696.1| cysteine--tRNA ligase [Borrelia burgdorferi WI91-23] Length = 480 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 158/498 (31%), Positives = 243/498 (48%), Gaps = 70/498 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + +E + N+++Y CGPTVY++AHIGN R I D+L + LR+ G K Sbjct: 3 LKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYK 59 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+ + AR++ ++ I+ T+ F D +L Sbjct: 60 -VNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV------YEISEFFTEAFFNDCRKL 112 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174 + P A+ HIP MI +++ + Y +N + FDTS +YG + + ++ Sbjct: 113 NIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKD 172 Query: 175 MGT-RVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 M RV K+N DF+LW ++ E W+SPWG G P WH+EC+AM+ Y Sbjct: 173 MTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDA 232 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DIH GG+D I HH NEIA + C +K ++++H FL ++ KMSKS GNFIT+ + Sbjct: 233 LDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 291 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSKG 345 LE + F +P+ R L +HYR + F++ L ++I L++K S Sbjct: 292 -LEDQNF------SPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYES-- 342 Query: 346 IIDPAVLSAL---------------YN--------DLNTVSAIQALHKLARESTKNH--- 379 +DP L+ L Y+ DLN + L ++ + + Sbjct: 343 -LDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNLSFVSK 401 Query: 380 -DLLPIFNASAHI-LGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFSSADYIRKQL 435 L IF+ + L E+ K N ++ I ++ L++ER I K F AD IR Sbjct: 402 LRLAFIFDEIMSLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFF 461 Query: 436 ESKGFILEDYKNPDNGQR 453 KGF+L D K +R Sbjct: 462 AKKGFVLVDTKEGTKVKR 479 >gi|195057996|ref|XP_001995365.1| GH23122 [Drosophila grimshawi] gi|193899571|gb|EDV98437.1| GH23122 [Drosophila grimshawi] Length = 533 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 132/397 (33%), Positives = 197/397 (49%), Gaps = 52/397 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYN R +P + Y CGPTVYD H+G+A + D++ R+LR Y+ Sbjct: 26 IQIYNHTVRGKVPLVLRNPHVVTWYTCGPTVYDKTHVGHASTYVKVDIIQRILRDYFKYN 85 Query: 65 CVTYVRNITDIDDKIIERARQEHPS-IPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VT + NITD+DDKII+R+R+ + + + A + +F D RL P + Sbjct: 86 LVTAM-NITDVDDKIIKRSRETGRNWLELAQAFAA-------EFKLDMHRLNVKPPNLRA 137 Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 + +I + I+ ++ AY +N + FD +S +YG + ++ P+ Sbjct: 138 HVSANIATIQLFIEQLLATQQAYVSQDNSVYFDVASCASYGKLEKLL----QLQESNPQS 193 Query: 183 YHKKNPADFILWKR------STPMEPGWESPWGR-GRPGWHIECSAMSSHYLGKVFDIHG 235 K+ ADF LWK + EP WE+ WG GRPGWHIECSA++ + G+ DIH Sbjct: 194 SGKRTAADFALWKAKKEGEAAQQDEPSWEASWGGVGRPGWHIECSAIAGKFFGRQLDIHA 253 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLE 293 GGLDL FPHHENE AQ C ++ N W+H G L+L G KMSKS GN I++ E+L Sbjct: 254 GGLDLRFPHHENEEAQCCAHYETDQWVNYWLHTGQLHLVGDEHKMSKSRGNTISVEEML- 312 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDF----------TVQRLTEAEILLSKWPQTSTS 343 TK + A R+A L+++YR + + T+++ LS + Q Sbjct: 313 TK------YTADEFRMACLLSNYRNAMPYGDSLMITARQTLRKFKNFHADLSAYMQFQKP 366 Query: 344 KGIIDPAVLSA------------LYNDLNTVSAIQAL 368 ++D L A L +D +T A+ L Sbjct: 367 LKLLDEGALQAQLKHTMLEFDNSLRDDFDTARALAVL 403 >gi|183983109|ref|YP_001851400.1| cysteinyl-tRNA synthetase, MshC [Mycobacterium marinum M] gi|310947198|sp|B2HFY1|MSHC_MYCMM RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|183176435|gb|ACC41545.1| cysteinyl-tRNA synthetase, MshC [Mycobacterium marinum M] Length = 411 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/413 (32%), Positives = 213/413 (51%), Gaps = 39/413 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+T +R++ + + P N MYVCG T YD H+G+A + FD+++RL Sbjct: 18 ELRLYDTADRQV---RPVAPGNTATMYVCGITPYDATHLGHAATYLAFDLIHRLWLDLGH 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV+N+TD+DD + ERA ++ + D + ++ F +D L L+P Sbjct: 75 E--VRYVQNVTDVDDPLFERADRD--GVDWRD----LAAQEVALFREDMAALRVLSPHDY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSRRKID------EQ 173 AT + ++I L++ ++ G AY + E + + + + +G S D EQ Sbjct: 127 VGATEAVAEIIELVEKLLASGAAYVLDGEHPDVYYRSDATLQFGYESGYDRDTMLGLFEQ 186 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G P + K + D +LW+ + P EP W SP+G GRPGWHIEC+A++ +G D+ Sbjct: 187 RGGD--PGRPGKNDALDALLWRAARPGEPSWPSPFGPGRPGWHIECAAIALSRVGSGLDV 244 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + ++ L Sbjct: 245 QGGGSDLIFPHHEFTAAHAECVTGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSGLRA 304 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 PA +RL +L HYR ++ Q L EA L +W +T D A + Sbjct: 305 EGVN-----PA-AVRLGLLAGHYRADRFWSQQVLDEAVGRLQRWRAATTLPAGPDAAAVV 358 Query: 354 A-----LYNDLNTVSAIQALHKLARESTK--NHD-LLPIFNASA--HILGIEV 396 A L +DLNT AI AL A ++ HD + P AS +LG+++ Sbjct: 359 ARVRQYLADDLNTPKAIAALDGWATDALDYGGHDEVAPRLVASTIDALLGVDL 411 >gi|229494883|ref|ZP_04388636.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Rhodococcus erythropolis SK121] gi|229318241|gb|EEN84109.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Rhodococcus erythropolis SK121] Length = 413 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 199/388 (51%), Gaps = 31/388 (7%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T +R++ + + P MYVCG T YD H+G+A + FD++ R+ R Sbjct: 19 LRLYDTADRQV---RPVTPGEKATMYVCGITPYDATHLGHAATYLTFDLVNRIWRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD + ERA ++ D I ++ + T F +D L L P Sbjct: 74 HDVHYVQNVTDVDDPLFERANRDG-----EDWI-VLGMRETALFREDMEALRVLPPKDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG--SFSRRKIDEQKMGT 177 A + +++ L++ + G AY ++ ++ F + +G S R E+ Sbjct: 128 GAVESVNEVVELVEKFVASGAAYIVDDAEFPDVYFRADATEQFGYESGYDRATMEKFFAE 187 Query: 178 RV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 R P++ K+NP D ++W+ P EP W SP+G GRPGWHIEC+A++ + +G FD+ G Sbjct: 188 RGGDPDRVGKRNPLDALVWRAERPGEPSWPSPFGPGRPGWHIECAAIALNRIGSGFDVQG 247 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHHE A + A + A ++H G + L+G KMSKS GN + +++L Sbjct: 248 GGSDLIFPHHEFSAAHAESATGDRRFARHYVHTGMIGLDGEKMSKSRGNLVFVSKLR--- 304 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA- 354 G IRL +L HYR+ +T Q L +A+ L W + + A Sbjct: 305 ---GEGVDPAAIRLGLLSGHYRQDRAWTDQVLADAQSRLKVWREAAALGSAPSATDTVAR 361 Query: 355 ----LYNDLNTVSAIQALHKLARESTKN 378 L +DL+T A+ AL AR + + Sbjct: 362 LRQHLADDLDTPKALDALDGWARRAIEG 389 >gi|153827601|ref|ZP_01980268.1| cysteinyl-tRNA synthetase [Vibrio cholerae MZO-2] gi|149737926|gb|EDM52831.1| cysteinyl-tRNA synthetase [Vibrio cholerae MZO-2] Length = 222 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 103/229 (44%), Positives = 144/229 (62%), Gaps = 9/229 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+N +++F+ S YG S++ +++ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSRYSEYGKLSKQDLEQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FD Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFD 222 >gi|325066743|ref|ZP_08125416.1| cysteinyl-tRNA synthetase [Actinomyces oris K20] Length = 229 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 149/238 (62%), Gaps = 24/238 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY--EANNEIIFDTSSIPNY 162 ++F L APT++PRAT HIP+MI L+Q ++ GHAY E+ N + +D S+P Y Sbjct: 3 REFDAAYRALGVDAPTYEPRATGHIPEMIDLVQRLLDAGHAYVGESGN-VYYDVRSLPGY 61 Query: 163 GSFSRRKI-------DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGR 212 GS + +++ DE ++ V + K++P DF LWK + P EP W++PWGRGR Sbjct: 62 GSLTNQRLEDLATTEDESQLDDDV--EADKRDPRDFALWKAAKPTEPADAAWDAPWGRGR 119 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWH+ECS MS YLG+ FDIHGGG+DL FPHHENE AQS A A W+HN ++ Sbjct: 120 PGWHLECSTMSRRYLGETFDIHGGGIDLRFPHHENEQAQSHGAGW--GFARHWVHNAWVT 177 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++G KMSKS GN + + ELL + + A V+RLA+ H+R ++F+ + L +A Sbjct: 178 IKGEKMSKSLGNSLVVAELL-------KRYDAAVLRLALGTVHHRSTVEFSEETLADA 228 >gi|21220159|ref|NP_625938.1| cysteinyl-tRNA synthetase [Streptomyces coelicolor A3(2)] gi|256788729|ref|ZP_05527160.1| cysteinyl-tRNA synthetase [Streptomyces lividans TK24] gi|289772623|ref|ZP_06532001.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces lividans TK24] gi|61216726|sp|Q9ADA4|MSHC_STRCO RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|13620189|emb|CAC36366.1| putative cysteinyl-tRNA synthetase [Streptomyces coelicolor A3(2)] gi|289702822|gb|EFD70251.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces lividans TK24] Length = 409 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 35/368 (9%) Query: 21 IDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 +DP + R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TD+DD + Sbjct: 32 LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPL 89 Query: 80 IERARQEHPSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 +ERA + D + + + + T F +D T L L P H A IP ++ L++ Sbjct: 90 LERA--------VRDGVDWTALAEQETALFREDMTALRMLPPQHYIGAVEAIPGIVPLVE 141 Query: 138 NIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADF 191 + G AYE ++ F + P++G S R + ++ G P++ KKNP D Sbjct: 142 RLRDAGAAYELEGDVYFSVEADPHFGGVSHLDAATMRLLSAERGGD--PDRPGKKNPLDP 199 Query: 192 ILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 +LW + EP W+ GRGRPGWHIEC A++ +LG FD+ GGG DL FPHHE + Sbjct: 200 MLWMAAREGEPSWDGGTLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGAS 259 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 + A ++H G + L+G KMSKS GN + +++L PA IRL Sbjct: 260 HAQALTGEFPMAKAYVHAGMVGLDGEKMSKSKGNLVFVSQLRREGVD-----PA-AIRLT 313 Query: 311 MLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSA 364 +L HYR ++T Q L +A L +W P ++ +++ + AL NDL++ +A Sbjct: 314 LLAHHYRSDWEWTDQVLQDALARLDRWRAAVSRPDGPPAEALVE-EIREALANDLDSPAA 372 Query: 365 IQALHKLA 372 + A+ + A Sbjct: 373 LAAVDRWA 380 >gi|83319731|ref|YP_424102.1| cysteinyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|109894910|sp|Q2ST11|SYC_MYCCT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83283617|gb|ABC01549.1| cysteinyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 441 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 142/441 (32%), Positives = 219/441 (49%), Gaps = 43/441 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y CGPTVY++ HIGNARP+I+ DVL R L+ + + Y++NITDIDDKII +A Sbjct: 19 INLYCCGPTVYNYIHIGNARPVILVDVLTRYLKSRNIK--INYLQNITDIDDKIILKALD 76 Query: 86 EHPSIPINDAISI-ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 N+ + I+ K T+ +++D L P + + +M+ I++++ Sbjct: 77 -------NNLTELEISQKYTKAYLEDLESLNINQPDKIILISEKMNEMVKFIKDLVDIKA 129 Query: 145 AYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 AYE + ++ FD N Y S K+DE G R+ KK DF LWK+ T + Sbjct: 130 AYELDGDVYFDIKKYQNEYCKLSGYKLDELISGKRIEIDSKKKYSLDFSLWKK-TQIGIK 188 Query: 204 WESPWGRGRPGWHIECSAMSSHYLG-KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W+S +G GRPGWH EC + Y + DIH GG+DL FPHHENE Q + E A Sbjct: 189 WDSFFGLGRPGWHTECVLLIDEYFNHQTIDIHVGGIDLKFPHHENERIQFIAKNNKE-LA 247 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +IW+HNG L + KMSKS GN I + + + + +R L T+Y +P++ Sbjct: 248 DIWLHNGHLQINDEKMSKSLGNVILVKDFI-------KKHNKNTLRWIFLTTNYTQPLNI 300 Query: 323 TVQRLTEAEILLSKWPQTS--TSKGIIDPAVLSALY--------------NDLNTVSAIQ 366 + + +A K S T + II + +L +DLNT + Sbjct: 301 SDDLIYQANKFFEKLTNLSKKTIQFIIKNDLKISLIKQSKYIDQFNNYMDDDLNTSLVLS 360 Query: 367 ALHKLARESTKN------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 + L ++ KN + + ++ ++IL + K+ N I++L + L+ Sbjct: 361 LIDSLIKQINKNILDNISDNFNLLISSLSYILDVLGFKDVFNYKFKKEIKELFLKWQQLV 420 Query: 421 KMKKFSSADYIRKQLESKGFI 441 K K+F AD IRK L +G + Sbjct: 421 KDKEFDKADLIRKDLIEQGIL 441 >gi|323455151|gb|EGB11020.1| hypothetical protein AURANDRAFT_12123 [Aureococcus anophagefferens] Length = 271 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 152/284 (53%), Gaps = 30/284 (10%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 ++ Y CGPTVYD H+G+AR + D++ R Y G + V + +TD+DDKII RAR Sbjct: 1 LKWYACGPTVYDATHLGHARTYVTLDLVRRAATAYGGSR-VDFAMGVTDVDDKIINRAR- 58 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E P+ + + F +D RL CL P R + H+ ++ + +I+ G Sbjct: 59 ELGLEPLE-----LARREEANFFEDLDRLGCLRPDRVLRVSEHVDDIVAYVGDIVDRGFG 113 Query: 146 YEA-NNEIIFDTSSIPN-YGSFSRRK-------------IDEQKMGTRVPEKYHKKNPAD 190 Y ++ FD + + YG+F+ + D+ + T+ K++ D Sbjct: 114 YATEGGDVWFDVGKLGDAYGAFAEGRGTSKAAAQAALEAEDKASISTK------KRDGRD 167 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK + E W+SPWG GRPGWHIECSAM+ G D+H GG+DL FPHHENEIA Sbjct: 168 FALWKGAKAGEISWDSPWGAGRPGWHIECSAMTRATFGDALDLHAGGVDLAFPHHENEIA 227 Query: 251 Q--SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 Q D W+H G L++EGRKMSKS NF+T+ ELL Sbjct: 228 QWRGASGDLEGVWCPCWLHTGHLHIEGRKMSKSLKNFVTVRELL 271 >gi|271967212|ref|YP_003341408.1| cysteine--tRNA ligase [Streptosporangium roseum DSM 43021] gi|310947222|sp|D2AU10|MSHC_STRRD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|270510387|gb|ACZ88665.1| Cysteine--tRNA ligase [Streptosporangium roseum DSM 43021] Length = 407 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 176/337 (52%), Gaps = 21/337 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T ++ Q R+YVCG T YD H+G+A + FD++ RL R E Sbjct: 19 LRLFDTAAGEVGPTQP--GPTARLYVCGITPYDATHLGHANTYLAFDLVNRLWRDAGHE- 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +N TD+DD ++ERA Q + + + F D L L P Sbjct: 76 -VHFTQNATDVDDPLLERAEQ------TGQDWRELAEREIELFRTDMEALRILPPREYVG 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS----RRKIDEQKMGTRVP 180 T I Q+ LI+ + G Y+ + ++ FD ++ P +G+ S R +D P Sbjct: 129 VTEVIDQVAELIELLRDKGATYDLDGDLYFDVAAAPKFGAVSGYSEERMLDLFGQRGGDP 188 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 ++ KK+P D++LW+ P EP W SP+G+GRPGWHIEC+A++ LG FD+ GGG DL Sbjct: 189 DRAGKKHPLDWLLWRAERPGEPSWPSPFGQGRPGWHIECTAIALANLGSGFDVAGGGSDL 248 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHE + A A ++H G + L+G KMSKS GN + ++ L + Sbjct: 249 IFPHHECGAHEGHVACGEWPFAKAYVHAGMVALDGEKMSKSKGNLVFVSRLRKEAD---- 304 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 IRLA+L HYR ++T +L AE+ L++W Sbjct: 305 ---PMAIRLALLAHHYRSDWEWTADQLASAEVRLARW 338 >gi|333028184|ref|ZP_08456248.1| putative cysteinyl-tRNA synthetase [Streptomyces sp. Tu6071] gi|332748036|gb|EGJ78477.1| putative cysteinyl-tRNA synthetase [Streptomyces sp. Tu6071] Length = 409 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 193/359 (53%), Gaps = 30/359 (8%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + + V YV+N+TD+DD ++ERA ++ Sbjct: 39 RIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDSGRQVHYVQNVTDVDDPLLERAVRD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 97 ------GEDWTGLAERETALFREDMTALRMLPPRHYIGAVEAIPGIVPLVERLCAMGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E +I F +S ++G S R + ++ G PE+ KKNP D +LW + Sbjct: 151 ELEGDIYFSVASDRHFGEVSNLDAEAMRLLSAERGGD--PERPGKKNPLDPMLWMAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ GRGRPGWHIEC A++ +LG FD+ GGG DL FPHHE + + Sbjct: 209 EPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGASHAQVLTGEH 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L+G KMSKS GN + ++ L +K G PA IRLA+L HYR Sbjct: 269 PFARSYVHAGMVGLDGEKMSKSKGNLVFVSRL---RKDGVD--PA-AIRLALLAHHYRAD 322 Query: 320 IDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 ++T + L EA L++W P +++ +++ V AL +DL++ A+ A + A Sbjct: 323 WEWTAEGLQEAVDRLARWRAAVSRPDGPSAEALVE-EVRDALADDLDSPRALLAFDRWA 380 >gi|302518136|ref|ZP_07270478.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. SPB78] gi|318059123|ref|ZP_07977846.1| cysteinyl-tRNA synthetase [Streptomyces sp. SA3_actG] gi|318078551|ref|ZP_07985883.1| cysteinyl-tRNA synthetase [Streptomyces sp. SA3_actF] gi|302427031|gb|EFK98846.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. SPB78] Length = 409 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 193/359 (53%), Gaps = 30/359 (8%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + + V YV+N+TD+DD ++ERA ++ Sbjct: 39 RIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDSGRQVHYVQNVTDVDDPLLERAVRD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 97 ------GEDWTGLAERETALFREDMTALRMLPPRHYIGAVEAIPGIVPLVERLCAMGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E +I F +S ++G S R + ++ G PE+ KKNP D +LW + Sbjct: 151 ELEGDIYFSVASDRHFGEVSNLDAEAMRLLSAERGGD--PERPGKKNPLDPMLWMAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ GRGRPGWHIEC A++ +LG FD+ GGG DL FPHHE + + Sbjct: 209 EPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGASHAQVLTGEH 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L+G KMSKS GN + ++ L +K G PA IRLA+L HYR Sbjct: 269 PFARSYVHAGMVGLDGEKMSKSKGNLVFVSRL---RKDGVD--PA-AIRLALLAHHYRAD 322 Query: 320 IDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 ++T + L EA L++W P +++ +++ V AL +DL++ A+ A + A Sbjct: 323 WEWTAEGLQEAVDRLARWRAAVSRPDGPSAEALVE-EVRDALADDLDSPRALLAFDRWA 380 >gi|254823397|ref|ZP_05228398.1| cysteinyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950] Length = 400 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/399 (32%), Positives = 199/399 (49%), Gaps = 46/399 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+T +R++ + S MYVCG T YD H+G+A + FD++YR ++ Sbjct: 7 ELRLYDTSDRQVRPVAS--GSTATMYVCGITPYDATHLGHAATYLAFDLIYR--QWLDLG 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD ++ERA E I + + + F +D T L LAP Sbjct: 63 HDVHYVQNVTDVDDPLLERA--ERDGIDWRE----LAQREVSLFREDMTALRMLAPREYV 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGS------------FSRR 168 AT I +++ L++ ++ G AY E I + + P +G FS R Sbjct: 117 GATEAIAEVVELVEKMLASGAAYVVEGEYPDIYYRADATPQFGYESGYDRETMLRLFSER 176 Query: 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 D Q+ G K + D +LW+ + P EP W SP+G GRPGWH+EC+A++ +G Sbjct: 177 GGDPQRPG--------KTDQLDALLWRAARPGEPSWPSPFGDGRPGWHVECAAIALSRIG 228 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 DI GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + + Sbjct: 229 SGLDIQGGGSDLIFPHHEFTAAHAECVRGERRFARHYVHAGMIGWDGHKMSKSRGNLVLV 288 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 + L + A IRL +L HYR ++ Q L EA L +W + D Sbjct: 289 STLR------AQGVEAAAIRLGLLAGHYRGDRYWSQQVLDEAVARLQRWRTATALPTGPD 342 Query: 349 PAVLSA-----LYNDLNTVSAIQALHKLARESTK--NHD 380 A + A L +DL+T A+ AL + ++ + HD Sbjct: 343 AADVIARVRQYLADDLDTPKALAALDGWSTDALEYGGHD 381 >gi|226306683|ref|YP_002766643.1| cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC [Rhodococcus erythropolis PR4] gi|310947210|sp|C0ZZW9|MSHC_RHOE4 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|226185800|dbj|BAH33904.1| probable cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC [Rhodococcus erythropolis PR4] Length = 413 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 199/388 (51%), Gaps = 31/388 (7%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T +R++ + + P MYVCG T YD H+G+A + FD++ R+ R Sbjct: 19 LRLYDTADRQV---RPVTPGKKATMYVCGITPYDATHLGHAATYLTFDLVNRIWRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD + ERA ++ D I ++ + T F +D L L P Sbjct: 74 HDVHYVQNVTDVDDPLFERANRDG-----EDWI-VLGIRETALFREDMEALRVLPPKDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG--SFSRRKIDEQKMGT 177 A + +++ L++ + G AY ++ ++ F + +G S R E+ Sbjct: 128 GAVESVNEVVELVEKFVASGAAYIVDDAEFPDVYFRADATEQFGYESGYDRATMEKFFAE 187 Query: 178 RV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 R P++ K+NP D ++W+ P EP W SP+G GRPGWHIEC+A++ + +G FD+ G Sbjct: 188 RGGDPDRVGKRNPLDALVWRAERPGEPSWPSPFGPGRPGWHIECAAIALNRIGSGFDVQG 247 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHHE A + A + A ++H G + L+G KMSKS GN + +++L Sbjct: 248 GGSDLIFPHHEFSAAHAESATGDRRFARHYVHTGMIGLDGEKMSKSRGNLVFVSKLR--- 304 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA- 354 G IRL +L HYR+ +T Q L +A+ L W + + A Sbjct: 305 ---GEGVDPAAIRLGLLSGHYRQDRAWTDQVLEDAQSRLKVWREAAALDSAPSATDTVAR 361 Query: 355 ----LYNDLNTVSAIQALHKLARESTKN 378 L +DL+T A+ AL AR + + Sbjct: 362 LRQHLADDLDTPKALDALDGWARRAIEG 389 >gi|297560505|ref|YP_003679479.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|310947207|sp|D7B412|MSHC_NOCDD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|296844953|gb|ADH66973.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 407 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 180/345 (52%), Gaps = 28/345 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MY CG T YD AH+G+A + FD++ R+ R + V YV+N TDIDD ++ERA E Sbjct: 40 MYACGITPYDAAHLGHAFTYLTFDLVNRVWRDAGHD--VNYVQNTTDIDDPLLERA--EA 95 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + D + + F +D L + PT + + L I G AYE Sbjct: 96 TGVDWRD----LAHREIDVFREDMAALRIIPPTSYVGVVESVDLISDLAARIRDTGAAYE 151 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKM----GTRV--PEKYHKKNPADFILWKRSTPME 201 + ++ F + P +G S +D +M G R P++ KK+P D++LW+ P E Sbjct: 152 LDGDLYFSVAEAPEFGEIS--NLDRGQMLELFGERGGDPQRTGKKDPLDWLLWRAERPGE 209 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 P W+SP GRGRPGWHIECSA++ LG FD++GGG DLIFPHHE A++ CA Sbjct: 210 PAWDSPLGRGRPGWHIECSAIALDRLGPAFDLNGGGSDLIFPHHEMGAAETRCATGGPNA 269 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N +H G + L+G KMSKS GN + +++L + PA VIRLAML HYR P + Sbjct: 270 HNH-LHVGMVGLDGEKMSKSLGNLVFVSKLRQQGVD-----PA-VIRLAMLAHHYRAPWE 322 Query: 322 FTVQRLTEAEILLSKWPQTSTSKGIID-----PAVLSALYNDLNT 361 +T L A +W D AV +AL DL++ Sbjct: 323 WTDAELPAATARAERWRSALALGAAPDAAPVLAAVRAALSEDLDS 367 >gi|328881306|emb|CCA54545.1| L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC [Streptomyces venezuelae ATCC 10712] Length = 409 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 34/361 (9%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TD+DD ++ERA Sbjct: 39 RIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPLLERA--- 93 Query: 87 HPSIPINDAISII--TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 I D + + + T F +D T L L P H A IP ++ L++ + G Sbjct: 94 -----IRDGVDWVGLAERETALFREDMTALRMLPPQHYIGAVEAIPGIVPLVERLRDSGA 148 Query: 145 AYEANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 AYE + +I F + P++G S R + ++ G PE+ KKNP D +LW + Sbjct: 149 AYELDGDIYFSVDADPHFGEVSHYSTELMRHLSAERGGD--PERPGKKNPLDPMLWMAAR 206 Query: 199 PMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W+ + G GRPGWHIEC A++ +LG FD+ GGG DLIFPHHE + + Sbjct: 207 EGEPSWDGASLGAGRPGWHIECVAIALDHLGMGFDVQGGGSDLIFPHHEMGASHAQALTG 266 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A ++H G + L+G KMSKS GN + +++L PA IRLA+L YR Sbjct: 267 EFPMAKAYVHAGMVALDGEKMSKSKGNLVFVSKLRRDGVD-----PA-AIRLALLSHRYR 320 Query: 318 EPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL 371 + ++T Q L +A+ L +W P ++ +++ + AL +DL+T +A+ A+ + Sbjct: 321 DDWEWTDQVLRDAQERLGRWRAAVSRPDGPSADALVE-ELREALSDDLDTPTALVAVDRW 379 Query: 372 A 372 A Sbjct: 380 A 380 >gi|187918460|ref|YP_001884023.1| cysteinyl-tRNA synthetase [Borrelia hermsii DAH] gi|229558618|sp|B2S0U7|SYC_BORHD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119861308|gb|AAX17103.1| cysteinyl-tRNA synthetase [Borrelia hermsii DAH] Length = 481 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 159/505 (31%), Positives = 243/505 (48%), Gaps = 80/505 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVL---YRLLRYYY 61 +K+YNT + +++ + S+ ++Y CGPTVY++AHIGN R I D+L RLL+Y Sbjct: 3 LKLYNTKTKSLSDIKNF--SDTKVYACGPTVYNYAHIGNLRTYIFEDLLIKSLRLLKY-- 58 Query: 62 GEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 V Y NITDI +DK+++ AR+ ++ I+ T+ F D Sbjct: 59 ---NVNYAMNITDIGHLTGDFDEGEDKVVKAARERGLTVYE------ISRFFTEAFFDDC 109 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKID 171 +L + P A+ +I MI +++ + +G Y N + FDTS YG + I+ Sbjct: 110 AKLNIVYPDKVLVASEYIASMIEVVKVLEQNGFTYFVNGNVYFDTSRFNGYGQMA--GIN 167 Query: 172 EQKMG----TRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSS 224 G +RV KKN +DF+LW ++ E W+SPWG G P WH+EC+AM+ Sbjct: 168 LNNFGRSSVSRVEIDLSKKNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNL 227 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSKSNG 283 Y DIH GG+D + HH NEIA + C + K ++++H FL +E KMSKSN Sbjct: 228 DYFKSTLDIHLGGVDHVGVHHINEIAIAECY--LNKMWCDMFVHGEFLIMEDEKMSKSNN 285 Query: 284 NFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWP 338 NFITI + LE+ F +P+ R L HYR + FT L +I +L+K Sbjct: 286 NFITIKD-LESDGF------SPLDFRYFCLTAHYRTQLKFTFSNLRACKIARENMLNKLT 338 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQA----LHKLAREST------------KNHDLL 382 +S D A+L+ ++ +VS + L K+A + + K+ DL Sbjct: 339 FFYSSLSQFDMALLNKNCENIESVSENKYYNNFLEKIAFDLSIPQALALLWDIVKDDDLS 398 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEK-----------LVQERLILLKMKKFSSADYI 431 + EV L + + IE+ L++ER + K F AD I Sbjct: 399 ALLKLLLAFKFDEVLSLGLKEGVLREIERDRVNIDDTMHSLIEERRLAKLRKDFKRADEI 458 Query: 432 RKQLESKGFILEDYKNPDNGQRMTR 456 R+ SKGF+L D + G ++ R Sbjct: 459 REYFRSKGFVLID---TEEGTKVKR 480 >gi|115903770|ref|XP_796899.2| PREDICTED: similar to MGC88928 protein [Strongylocentrotus purpuratus] gi|115973007|ref|XP_001191711.1| PREDICTED: similar to MGC88928 protein [Strongylocentrotus purpuratus] Length = 523 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 193/377 (51%), Gaps = 40/377 (10%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 + CGPTVYD AHIG+A + FD++ R+L ++ + V V ITDIDDKII R+ +++ Sbjct: 48 FACGPTVYDSAHIGHASSYVRFDIIRRILAEFF-QTSVVMVMGITDIDDKIIRRSHEQN- 105 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 + D + ++F +D L L T R ++HIP+++ I +II +G+ Y Sbjct: 106 ---LKD-FRELAGFYEREFYQDMQHLKVLPATVYTRVSDHIPEILTFIDSIIKNGYGYST 161 Query: 149 NNEIIF---DTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 ++ ++ D ++ Y + + +D Q + K++P DF LWK P EP W+ Sbjct: 162 SSGSVYFNVDAFTLERYDKLASQDLDVQHDEGKEFIDPEKRHPRDFALWKGVKPGEPWWD 221 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 +PWG+GRPGWHIECSAMS G+ DIH GG DL FPHH NEIAQ + AN + Sbjct: 222 APWGKGRPGWHIECSAMSKAIFGERLDIHTGGRDLAFPHHNNEIAQCEACFNSNQWANYF 281 Query: 266 IHNGFL--NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +H+G L + KMSKS N ++I + L+T + R LM+ Y +++ Sbjct: 282 LHSGHLYRKYDADKMSKSLQNVVSIQDFLKT-------YTPNQFRFLCLMSKYDHDLEYG 334 Query: 324 VQRLTEAEIL---LSKWPQTSTS--KGII-----------------DPAVLSALYNDLNT 361 + +A +L +S + + + KG I V+ AL +D +T Sbjct: 335 PDTMQQAVVLHRQMSAFLNDADAYVKGQICCKPFNEAELMQRLETTREEVIEALADDFDT 394 Query: 362 VSAIQALHKLARESTKN 378 A+ + KLA N Sbjct: 395 KRALDCIMKLAHTCNSN 411 >gi|13508095|ref|NP_110044.1| cysteinyl-tRNA synthetase [Mycoplasma pneumoniae M129] gi|2500964|sp|P75423|SYC_MYCPN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1674171|gb|AAB96128.1| cysteinyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length = 437 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 145/448 (32%), Positives = 213/448 (47%), Gaps = 56/448 (12%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 ++ I +Y+CGPTVY+ H+GN RP+IVFDVL R+L+ + V +V+NITDIDDKI Sbjct: 20 VLEQKQINIYLCGPTVYNDLHLGNTRPLIVFDVLQRVLQA--AQYKVQFVQNITDIDDKI 77 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 I+ A+Q+ S K K + + P + T+ I +M I + Sbjct: 78 IKIAQQQEIS-------EAQLCKQQITAYKSLLKKLNILPIKHLQVTDKIDKMPGYIARL 130 Query: 140 ILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 + G AY + F S +P YG + R ++ T E K+N DF+LWK++T Sbjct: 131 VKKGFAYVSPLGNTYFSVSQLPQYGILANRVVE-----TIEDEATDKRNKLDFVLWKQTT 185 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 W SPWG GRPGWH+EC+ + + IHGGG+DL FPHHENE A Sbjct: 186 A-GVKWNSPWGWGRPGWHVECAFLIDYSFKDQLTIHGGGVDLKFPHHENENAMHMALYDK 244 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 T + W+H G L E +KMSKS NF+ + L F ++R HY Sbjct: 245 PLTQH-WMHIGHLMFENQKMSKSLQNFLLAVDFLTIHDF-------RILRWLFYQKHYYH 296 Query: 319 PIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPA----VLSALYNDLNTVSA 364 P+D + ++R+ +A + W S I P V AL N+LN +A Sbjct: 297 PLDLSQSLIEQACSDIKRIQKAVNVCRTWFVYSEQSAIPAPKQFEPVFKALLNNLNFANA 356 Query: 365 IQALHKLARESTKNHDL-----------LPIFNASAHILGIEVCKEHLNKNISIAIEKLV 413 I + KL ++ NHD+ L + +ILGI H N+ +L+ Sbjct: 357 ITHIWKLVKQI--NHDVSKQNLSGLKEHLSHLEWALNILGIGFKSIHTKLNV-----QLI 409 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFI 441 ++ L K + AD +R++L KG + Sbjct: 410 KKWASLRKNGQLDKADEVRQKLIKKGLL 437 >gi|301633284|gb|ADK86838.1| cysteine--tRNA ligase [Mycoplasma pneumoniae FH] Length = 437 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 145/448 (32%), Positives = 213/448 (47%), Gaps = 56/448 (12%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 ++ I +Y+CGPTVY+ H+GN RP+IVFDVL R+L+ + V +V+NITDIDDKI Sbjct: 20 VLEQKQINIYLCGPTVYNDLHLGNTRPLIVFDVLQRVLQA--AQYKVQFVQNITDIDDKI 77 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 I+ A+Q+ S K K + + P + T+ I +M I + Sbjct: 78 IKIAQQQEIS-------EAQLCKQQITAYKSLLKKLNILPIKHLQVTDKIDKMPGYIARL 130 Query: 140 ILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 + G AY + F S +P YG + R ++ T E K+N DF+LWK++T Sbjct: 131 VQMGFAYVSPLGNTYFSVSQLPQYGILANRVVE-----TIEDEATDKRNKLDFVLWKQTT 185 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 W SPWG GRPGWH+EC+ + + IHGGG+DL FPHHENE A Sbjct: 186 A-GVKWNSPWGWGRPGWHVECAFLIDYSFKDQLTIHGGGVDLKFPHHENENAMHMALYDK 244 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 T + W+H G L E +KMSKS NF+ + L F ++R HY Sbjct: 245 PLTQH-WMHIGHLMFENQKMSKSLQNFLLAVDFLTIHDF-------RILRWLFYQKHYYH 296 Query: 319 PIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPA----VLSALYNDLNTVSA 364 P+D + ++R+ +A + W S I P V AL N+LN +A Sbjct: 297 PLDLSQSLIEQACSDIKRIQKAVNVCRTWFVYSEQSAIPAPKQFEPVFKALLNNLNFANA 356 Query: 365 IQALHKLARESTKNHDL-----------LPIFNASAHILGIEVCKEHLNKNISIAIEKLV 413 I + KL ++ NHD+ L + +ILGI H N+ +L+ Sbjct: 357 ITHIWKLVKQI--NHDVSKQNLSGLKEHLSHLEWALNILGIGFKSIHTKLNV-----QLI 409 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFI 441 ++ L K + AD +R++L KG + Sbjct: 410 KKWASLRKNGQLDKADEVRQKLIKKGLL 437 >gi|289641824|ref|ZP_06473981.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Frankia symbiont of Datisca glomerata] gi|289508349|gb|EFD29291.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Frankia symbiont of Datisca glomerata] Length = 413 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 189/379 (49%), Gaps = 29/379 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++ +T R + A +RMYVCG T YD H+G+A + +D+ YR+L Sbjct: 19 LRVSDTATRAVRPLAA--GQTVRMYVCGITPYDATHLGHAFTYLTYDLAYRVL--LDAGH 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD + ERAR++ S+ + I T+ F D T L L P Sbjct: 75 DVVYVQNVTDVDDPLFERARRD--SLDWRE----IARSQTELFRADMTALRILPPAVYAG 128 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----- 179 A IP +I LI+ + G AY +I F + P +G S + +M TR Sbjct: 129 AVESIPLVIELIEQLRDRGAAYPVEQDIYFPIGAAPRFGEVS--HLSHAEMVTRAAGNGG 186 Query: 180 -PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 P + K +P D +LW+ EP W SP+G GRPGWHIEC+A++ +LG DI GGG Sbjct: 187 DPRRAGKDDPLDPLLWRAERAGEPSWPSPFGPGRPGWHIECAAIALAHLGDSIDIQGGGT 246 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHE +A + A + A ++H ++L G KMSKS GN ++ LL Sbjct: 247 DLVFPHHECGVAHAEVASGVWPFARTYVHTAMVSLGGHKMSKSRGNLEFVSRLLR----- 301 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-----S 353 G PA IRLA+L + ++T + A L++W + D L Sbjct: 302 GGVQPA-AIRLALLDHRHTVGWEWTPGAIDTARDRLARWQAATAGASAPDARPLLDDVRR 360 Query: 354 ALYNDLNTVSAIQALHKLA 372 L +DL+ A+ A+ + A Sbjct: 361 HLADDLDAPGALAAVDRWA 379 >gi|111017896|ref|YP_700868.1| cysteinyl-tRNA synthetase [Rhodococcus jostii RHA1] gi|122956108|sp|Q0SIC6|MSHC_RHOSR RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|110817426|gb|ABG92710.1| cysteine--tRNA ligase [Rhodococcus jostii RHA1] Length = 415 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 200/387 (51%), Gaps = 35/387 (9%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++T +R++ + + P MYVCG T YD H+G+A + FD++ R+ R Sbjct: 19 LRLFDTADRQV---RPVTPGRTATMYVCGITPYDATHLGHAATYLTFDLVNRIWRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD + ERA ++ + ++ + T F +D L L P Sbjct: 74 HDVHYVQNVTDVDDPLFERANRD------GEDWVVLGMRETALFREDMEALRVLPPRDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKIDE---Q 173 A I ++I +++ + G AY ++ ++ F ++ +G + R +D+ + Sbjct: 128 GAVESIGEVIEMVEKFVASGAAYVVDDPEFPDVYFRANATEQFGYESGYDRETMDKFFAE 187 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G P++ K++P D ++W+ P EP W SP+G GRPGWHIECSA++ + +G FD+ Sbjct: 188 RGGD--PDRPGKEDPLDALVWRAVRPGEPSWPSPFGPGRPGWHIECSAIALNRIGSGFDV 245 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + A + A ++H G + L+G KMSKS GN + +++L Sbjct: 246 QGGGSDLIFPHHEYSAAHAESATGDRRFARHYVHTGMIGLDGEKMSKSRGNLVFVSKLR- 304 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS 353 G IRL +L HYR+ +T Q L +A L W + + Sbjct: 305 -----GEGVDPAAIRLGLLSGHYRQDRPWTEQLLADAHTRLQLWKDAAALESAPSATDTI 359 Query: 354 A-----LYNDLNTVSAIQALHKLARES 375 A L +DL+T A+ AL AR + Sbjct: 360 ARLRQHLADDLDTPKALDALDGWARRA 386 >gi|291301962|ref|YP_003513240.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Stackebrandtia nassauensis DSM 44728] gi|310947219|sp|D3Q598|MSHC_STANL RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|290571182|gb|ADD44147.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Stackebrandtia nassauensis DSM 44728] Length = 431 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 200/383 (52%), Gaps = 27/383 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T R+ P RMYVCG T YD H+G+A M+ FDV+ R+ R + Sbjct: 19 LRLYDT-ARQAVHATEPHPDGARMYVCGITPYDATHLGHAATMVTFDVINRVWRDNGHD- 76 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+D+ + ERA ++ + ++ + T F +D L+ + P Sbjct: 77 -VAYVQNVTDVDEPLFERAERD------GEDWVVLGMRETALFREDMEALSIIPPKAYVG 129 Query: 125 ATNHIPQMIYLIQNIILHGHAY---EANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRV 179 A +P + L++ ++ G AY + ++ F ++ +GS S D + G R Sbjct: 130 AVESMPTIAALVERLVDAGAAYTVDDGTGDVYFPVTATEGFGSESHYDRDTMLRFFGERG 189 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P++ K++P D +LW+ EP WES GRGRPGWHIEC+A++ +LG D++GGG Sbjct: 190 GDPDRSGKRDPLDALLWRGEREGEPSWESRLGRGRPGWHIECAAIALAHLGDRIDVNGGG 249 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHE A + A + A ++H G + L+G KMSKS GN + ++ L Sbjct: 250 NDLIFPHHEFSAAHAEAATKAVPFAKHYVHAGMIGLDGEKMSKSRGNLVFVSRLRADGVD 309 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPAVL 352 PA VIRLA+L HYRE +T + A L++W + + S V Sbjct: 310 -----PA-VIRLALLDGHYREDRPWTAELHAAAADRLARWREAMGMSSGASGTTTAQRVR 363 Query: 353 SALYNDLNTVSAIQALHKLARES 375 L +DL+T A++A+ + A S Sbjct: 364 ERLSDDLDTPGALRAVDEWAAAS 386 >gi|85709165|ref|ZP_01040231.1| cysteinyl-tRNA synthetase [Erythrobacter sp. NAP1] gi|85690699|gb|EAQ30702.1| cysteinyl-tRNA synthetase [Erythrobacter sp. NAP1] Length = 486 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 153/490 (31%), Positives = 231/490 (47%), Gaps = 74/490 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L R+I EF I R+Y CGPTVY++ HIGN R + D L R L+ G K Sbjct: 10 LRLFNSLNRQIEEFVPIHEGEARVYTCGPTVYNYQHIGNMRAYVFADTLGRTLQLK-GLK 68 Query: 65 CVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +T+V NITD+ D + E + + I + F +D RL Sbjct: 69 -LTHVINITDVGHLTSDADEGEDKMEKMAASQGKSAWDIARFYQEDFERDLARLNVQKKQ 127 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H PRAT ++ +MI + + H YE + + FD S++ +YG +R +E + R+ Sbjct: 128 H-PRATQYVEEMIAWGKRVA-DKHCYELESGLYFDVSTVADYGKLARAVTEEGE--GRIE 183 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K+N ADF +W+++ E W+SPWG+G PGWH+ECS M LG FDIH GG Sbjct: 184 RLEGKRNAADFAIWRKTPEGETRQMEWDSPWGKGAPGWHLECSVMGEALLGFPFDIHTGG 243 Query: 238 LDLIFPHHENEIAQS---CC----ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 +D HH NEIAQ+ CC +D A IW+HN FL KMSKS+G F+ + + Sbjct: 244 IDHREIHHPNEIAQNQAYCCSGGLSDATNSGARIWMHNNFLVERSGKMSKSSGEFLRL-Q 302 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQT 340 LL K F ++ R+ L HYR ++F+ ++R+ A L+ P Sbjct: 303 LLVDKGFHPHAY-----RMMCLQAHYRSELEFSWEGLEAALTRLKRMIMAVERLADAPSQ 357 Query: 341 STSKGIIDPAVLS----ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 ++ A L+ A+ +DLNT A+ AL D L A I V Sbjct: 358 PVAEHPKFAAPLAKFEEAMSDDLNTAIALTAL----------EDALATKKVDAGIKRAVV 407 Query: 397 CKEHLNKNISIAIEKLVQERLIL----------------------LKMKKFSSADYIRKQ 434 EH++ + + + L + L + K F+++D IR + Sbjct: 408 --EHMDAVLGLDLFSLSRADLRIRPASAEIAEEEIEDALARRKAARAEKDFATSDAIRDE 465 Query: 435 LESKGFILED 444 L +KG + D Sbjct: 466 LAAKGVEVMD 475 >gi|227488922|ref|ZP_03919238.1| cysteine--tRNA ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091106|gb|EEI26418.1| cysteine--tRNA ligase [Corynebacterium glucuronolyticum ATCC 51867] Length = 442 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 204/393 (51%), Gaps = 35/393 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y++ + +I +A + MYVCG T YD H+G+A + FD++YR L+ + Sbjct: 49 LNLYDSADDRIKPVKAGKVAT--MYVCGITPYDATHLGHAATYLAFDLIYRQLKANGHD- 105 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD + ERA ++ N + + F D +L+ P Sbjct: 106 -VHYVQNVTDVDDPLFERAERD------NVDWRELGTSQIDLFRSDMEKLSVFPPQDFVG 158 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDE------QK 174 + ++I ++Q +I G Y ++ ++ ++ +G SR +E ++ Sbjct: 159 VQEAVDEVIDMVQELIDKGVVYAIDDPEYPDLYVRVNATEQFGYESRFSREEMLDVFAER 218 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G PE+ KK+P D ++WK + P EP W++P+G GRPGWHIECSA++ + L FDI Sbjct: 219 GGD--PERPGKKDPLDALVWKMARPGEPSWDAPFGAGRPGWHIECSAIARNRLSVPFDIQ 276 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL+FPHHE A + A + A ++H G + L+G KMSKS GN + +++LLE Sbjct: 277 GGGRDLVFPHHEFSAAHAEAATGEPRMAGHYVHGGMIALDGVKMSKSLGNLVFVSKLLEE 336 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 PA IRL++ HYR DF+ L + E L+ + P T + Sbjct: 337 GHT-----PA-AIRLSVFSGHYRADRDFSGAILKQCESLVERLRASVDKPSTRAETEALV 390 Query: 349 PAVLSALYNDLNTVSAIQALHKLA-RESTKNHD 380 + AL +DL+T AI A+ A RE T + D Sbjct: 391 TEIREALADDLDTPRAIAAIEAWANREWTGDSD 423 >gi|172040712|ref|YP_001800426.1| cysteinyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109] gi|310947168|sp|B1VDU4|MSHC2_CORU7 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 2; Short=L-Cys:GlcN-Ins ligase 2; AltName: Full=Mycothiol ligase 2; Short=MSH ligase 2 gi|171852016|emb|CAQ04992.1| MshC ligase [Corynebacterium urealyticum DSM 7109] Length = 439 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 36/387 (9%) Query: 4 KIKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+T + ++ D + + +YVCG T YD H+G+A FD++ R LR Sbjct: 32 ELRLYDTADDRVKAVALPDDGAPVGIYVCGITPYDSTHLGHAATYNTFDLVNRYLRA--A 89 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPT 120 VTYV+N+TD+DD + ERA + D + + + T F D T+L L P Sbjct: 90 GHGVTYVQNVTDVDDPLFERADR--------DGVDWRELGKEQTDLFRSDMTQLRILPPE 141 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSR------RKID 171 A I +++ ++ ++ G AY + E I D + +G SR R++ Sbjct: 142 FFVGAMETIDEVVEMVSTLLDKGAAYVVDGEYPDIYADHTYTEQFGYESRYDEATMRELF 201 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ G PE+ K++P D +LW+ EP W++P+G GRPGWH+EC+A++++ LG+ F Sbjct: 202 AERGGD--PEREGKRHPLDALLWRAHRTGEPEWDAPFGSGRPGWHVECAAIATNRLGEQF 259 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 I GGG+DL +PHHE A + A ++ A ++H G + LEG KMSKS GN ++ L Sbjct: 260 AIQGGGVDLRYPHHEYSAAHAEAACGNQRMAGHYVHTGMIGLEGTKMSKSLGNLEFVSAL 319 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------G 345 + + IR+ + HYRE D++ + L EAE L+KW + + Sbjct: 320 T------AQGFDPAAIRVGLYAGHYREDRDWSAEVLNEAEDRLAKWRAAAAEENNPQRVA 373 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLA 372 + V L NDL+T S ++ L + A Sbjct: 374 EVLATVTGHLANDLDTPSVLRTLDEWA 400 >gi|326382269|ref|ZP_08203961.1| cysteinyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326198999|gb|EGD56181.1| cysteinyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] Length = 416 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 181/344 (52%), Gaps = 30/344 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T + ++ + + P + MYVCG T YD H+G+A + FD++ R+LR G Sbjct: 19 LRLYDTSDAQV---KPVSPGEVATMYVCGITPYDATHLGHAATYVTFDLINRVLRD--GG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+NITD+DD + ERA ++ + D + ++ F D T L LAP Sbjct: 74 HDVHYVQNITDVDDPLFERAERD--GVDWRD----LGAREIDLFRADMTALRVLAPRDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 A I ++I + ++ +G AY ++ ++ F + P +G S D + M Sbjct: 128 GAVESIDEVIDAVGKLLANGSAYVVDDPEFPDVYFSVDATPQFGYES--GYDGETMAKFF 185 Query: 180 ------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 P++ K+NP D ++W+ + EP WESP G GRPGWHIECSA++ + LG FDI Sbjct: 186 AERGGDPDRAGKRNPLDALVWRAARDGEPSWESPMGPGRPGWHIECSAIALNRLGMAFDI 245 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + A ++H G + L+G KMSKS GN + +++L Sbjct: 246 QGGGSDLIFPHHEFSAAHGEALTGERRFARHYVHTGMIGLDGEKMSKSLGNLVLVSKLRA 305 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 G +RL ++ HYR +T LT+ E L+ W Sbjct: 306 AGVDAG------AVRLGLMSQHYRADRMWTDDILTDGERRLATW 343 >gi|295839782|ref|ZP_06826715.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. SPB74] gi|197697718|gb|EDY44651.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. SPB74] Length = 409 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 195/359 (54%), Gaps = 30/359 (8%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + + V YV+N+TD+DD ++ERA ++ Sbjct: 39 RIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDSGRQVHYVQNVTDVDDPLLERAVRD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 97 ------GEDWTGLAERETALFREDMTALRMLPPRHYIGAVEAIPGIVPLVERLRERGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E +I F +S ++G S R + ++ G PE+ KKNP D +LW + Sbjct: 151 ELEGDIYFSVASDRHFGEVSNLDAEAMRLLSAERGGD--PERPGKKNPLDPMLWMAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ G GRPGWHIEC A++ +LG FD+ GGG DL FPHHE + + Sbjct: 209 EPSWDGGSLGDGRPGWHIECVAIALDHLGMAFDVQGGGSDLAFPHHEMGASHAQVLTGEH 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L+G KMSKS GN + +++L +K G PA IRLA+L HYR Sbjct: 269 PFARSYVHAGMVGLDGEKMSKSRGNLVFVSQL---RKDGVD--PA-AIRLALLAHHYRAD 322 Query: 320 IDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 ++T + L EA L++W P + ++ +++ V AL +DL++ A++A+ + A Sbjct: 323 WEWTAEGLQEAVDRLARWRAAVSRPDGTPAETLVE-EVRDALADDLDSPRALRAIDRWA 380 >gi|302533542|ref|ZP_07285884.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. C] gi|302442437|gb|EFL14253.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. C] Length = 409 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 187/347 (53%), Gaps = 30/347 (8%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD HIG+A FD++ R+ + ++ V YV+N+TD+DD ++ERA ++ Sbjct: 39 RLYVCGITPYDATHIGHAATYNAFDLVQRV--WLDNKRQVHYVQNVTDVDDPLLERALRD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 97 ------GHDWTELAERETALFREDMTALRMLPPQHYIGAVEAIPGIVPLVERLRDAGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E + ++ F + P++G S R + ++ G P++ KKNP D +LW + Sbjct: 151 ELDGDVYFSVEADPDFGGVSHLDAAAMRALSAERGGD--PDRPGKKNPLDPMLWMAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ GRGRPGWHIEC A++ +LG FDI GGG DL FPHHE + + Sbjct: 209 EPSWDGGSLGRGRPGWHIECVAIALEHLGMGFDIQGGGSDLAFPHHEMGASHAQALTGEF 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L G KMSKS GN + ++ L ++ G PA IRLA+L HYR Sbjct: 269 PMAKAYVHAGMVALHGEKMSKSKGNLVFVSAL---RRAGVD--PA-AIRLALLAHHYRAN 322 Query: 320 IDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLN 360 ++T L +AE L++W P ++ +++ V +AL +DLN Sbjct: 323 WEWTDDVLAQAEARLARWRAAVSRPDGLPAEALVE-EVRAALADDLN 368 >gi|290961655|ref|YP_003492837.1| cysteinyl-tRNA synthetase [Streptomyces scabiei 87.22] gi|310947223|sp|C9Z2Z3|MSHC_STRSW RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|260651181|emb|CBG74302.1| putative cysteinyl-tRNA synthetase [Streptomyces scabiei 87.22] Length = 409 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 184/343 (53%), Gaps = 27/343 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATDGLI---TLDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA ++ D +++ K T F +D T L L P H Sbjct: 72 TKRQVHYVQNVTDVDDPLLERAARDD-----IDWVAL-AEKETALFREDMTALRMLPPRH 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ ++ G AYE ++ F + P++G SR R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLLASGAAYELEGDVYFSVEADPDFGKVSRLDAATMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P++ KKNP D +LW + EP W+ GRGRPGWHIEC A++ +LG FD+ Sbjct: 186 GD--PDRAGKKNPLDPMLWMAAREGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE + + A ++H G + L G KMSKS GN + ++ L Sbjct: 244 GGGSDLAFPHHEMGASHAQALTGEFPMAKAYVHAGMVALHGEKMSKSKGNLVFVSALRRD 303 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 PA IRLA+L HYR ++T Q L +A L +W Sbjct: 304 GVD-----PA-AIRLALLAHHYRADWEWTDQVLQDAVDRLGRW 340 >gi|329939109|ref|ZP_08288483.1| cysteinyl-tRNA synthetase [Streptomyces griseoaurantiacus M045] gi|329301994|gb|EGG45887.1| cysteinyl-tRNA synthetase [Streptomyces griseoaurantiacus M045] Length = 409 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/387 (33%), Positives = 203/387 (52%), Gaps = 35/387 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T Q P + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGAPVTLQ---PGPVARLYVCGITPYDATHMGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA ++ + + + T+ F +D T L L P H Sbjct: 72 TKRQVHYVQNVTDVDDPLLERAERDGLDW------TALAEQETKLFREDMTALRMLPPRH 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ + G AY+ ++ F S P++G S R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLRELGAAYDLEGDVYFSVESDPHFGEVSHLDAAAMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P++ KKNP D +LW + EP W+ GRGRPGWHIEC A++ +LG FD+ Sbjct: 186 GD--PDRPGKKNPLDPMLWMAAREGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 244 GGGSDLAFPHHEMGASHAQVLTGEFPMAKAYVHAGMVALDGEKMSKSKGNLVFVSRLRRD 303 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 PA IRLA+ HYR ++T Q L +A L +W P ++ +++ Sbjct: 304 GVD-----PA-AIRLALHAHHYRSDWEWTDQVLRDAVARLERWRAAVSRPDGPAAEDMVE 357 Query: 349 PAVLSALYNDLNTVSAIQALHK-LARE 374 AV +AL +DLN A+ A+ + +AR+ Sbjct: 358 -AVRAALADDLNAPEALAAVDRWVARQ 383 >gi|227542084|ref|ZP_03972133.1| cysteine--tRNA ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182135|gb|EEI63107.1| cysteine--tRNA ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 442 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 35/393 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +Y++ + +I +A + MYVCG T YD H+G+A + FD++YR L+ + Sbjct: 49 LNLYDSADDRIKPVKAGKVAT--MYVCGITPYDATHLGHAATYLAFDLIYRQLKANGHD- 105 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD + ERA ++ N + + F D +L+ P Sbjct: 106 -VHYVQNVTDVDDPLFERAERD------NVDWRELGTSQIDLFRSDMEKLSVFPPQDFVG 158 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDE------QK 174 + ++I ++Q +I G Y ++ ++ ++ +G SR +E ++ Sbjct: 159 VQEAVDEVIDMVQELIDKGVVYAIDDPEYPDLYVRVNATEQFGYESRFSREEMLDVFAER 218 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G PE+ K++P D ++WK + P EP W++P+G GRPGWHIECSA++ + L FDI Sbjct: 219 GGD--PERPGKEDPLDALVWKMARPGEPSWDAPFGAGRPGWHIECSAIARNRLSVPFDIQ 276 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL+FPHHE A + A + A ++H G + L+G KMSKS GN + +++LLE Sbjct: 277 GGGRDLVFPHHEFSAAHAEAATGEPRMAGHYVHGGMIALDGVKMSKSLGNLVFVSKLLEE 336 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 PA IRL++ HYR DF+ L + E L+ + P T + Sbjct: 337 GHT-----PA-AIRLSVFSGHYRADRDFSGAILKQCESLVERLRASVDKPSTRAEAEALV 390 Query: 349 PAVLSALYNDLNTVSAIQALHKLA-RESTKNHD 380 + AL +DL+T AI A+ A RE T + D Sbjct: 391 TEIREALADDLDTPRAIAAIEAWANREWTGDSD 423 >gi|119716853|ref|YP_923818.1| cysteinyl-tRNA synthetase [Nocardioides sp. JS614] gi|310947208|sp|A1SJZ6|MSHC_NOCSJ RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|119537514|gb|ABL82131.1| cysteinyl-tRNA synthetase [Nocardioides sp. JS614] Length = 397 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 179/331 (54%), Gaps = 23/331 (6%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A + FD+L R R + VTYV+N+TD+DD ++ERA + Sbjct: 21 RLYVCGITPYDATHLGHASTYVAFDLLNRAWRNAGHD--VTYVQNVTDVDDPLLERAAKV 78 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 H D + + + T+ F +D L + P H A IP +I LI + G Y Sbjct: 79 H-----VDWVEL-AERETELFRQDMAALRVIPPDHYVGAVESIPLVIELIGRLETAGAIY 132 Query: 147 EANNEIIFDTSSIPNYGS---FSRRKIDE---QKMGTRVPEKYHKKNPADFILWKRSTPM 200 +++ F ++ P +G+ + R ++ E ++ G P++ KK+P D ++W+ Sbjct: 133 RVEDDLYFSVTADPAFGAESGWDRERMLEIYPERGGD--PDRPGKKDPLDCVVWRGRREG 190 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 EP WESPWG GRPGWH+EC+A++ +LG FD+ GGG DL+FPHHE + A Sbjct: 191 EPSWESPWGPGRPGWHVECTAIAQRHLGGAFDVQGGGSDLVFPHHEMCAGHAQVAVPGTP 250 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 A ++ H G + +G KMSKS GN + ++ L + IRLA+L H+R Sbjct: 251 FAQVYSHGGMVGYDGEKMSKSRGNLVFVSALRNSDV------DPMAIRLALLRHHFRSDW 304 Query: 321 DFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 ++T +L A +++W + + S G PA Sbjct: 305 EWTDDQLWVAVDDIARW-RKALSLGAGAPAA 334 >gi|302561530|ref|ZP_07313872.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302479148|gb|EFL42241.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 409 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 34/384 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + +DP + R+YVCG T YD HIG+A FD++ R+ + Sbjct: 17 RDLRIHDT---ATGDLVTLDPGPVARIYVCGITPYDATHIGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA ++ + + + T F +D T L L P Sbjct: 72 TKRQVHYVQNVTDVDDPLLERAERDGLDW------TALAERETALFREDMTALRMLPPRQ 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ + G YE + +I F + P++G S R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLRELGATYELDGDIYFSVEADPHFGEVSHLDAAAMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G PE+ KK+P D +LW + EP W+ GRGRPGWHIEC A++ +LG FD+ Sbjct: 186 GD--PERPGKKDPVDPMLWMAAREGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL+FPHHE + + A ++H G + L G KMSKS GN + ++ L Sbjct: 244 GGGSDLVFPHHEMGASHAQVLTGEFPMAKAYVHAGMVALHGEKMSKSKGNLVFVSTL--- 300 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 ++ G PA IRLA+L HYR ++T Q L +A L W P + +++ Sbjct: 301 RRDGVD--PA-AIRLALLAHHYRADWEWTDQVLQDAVTRLDHWRAAVSRPDGPPADALVE 357 Query: 349 PAVLSALYNDLNTVSAIQALHKLA 372 + AL DLN +A+ A+ + A Sbjct: 358 -EIREALAGDLNAPAALAAVDRWA 380 >gi|311742513|ref|ZP_07716322.1| cysteine--tRNA ligase [Aeromicrobium marinum DSM 15272] gi|311314141|gb|EFQ84049.1| cysteine--tRNA ligase [Aeromicrobium marinum DSM 15272] Length = 412 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 187/355 (52%), Gaps = 33/355 (9%) Query: 21 IDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 +DP S+ R+YVCG T YD H+G+A + FD+L R R + VTY +N+TD+DD + Sbjct: 36 VDPDSHARLYVCGITPYDATHLGHAATYLAFDLLQRAWRDRGLD--VTYTQNVTDVDDPL 93 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 +ERA + D +++ ++ T+ F +D T L ++P H A I ++ L+ + Sbjct: 94 LERA-----TATGVDWVTLAEAQ-TELFRQDMTALRIISPDHYVGAVESIDLVVDLVDRL 147 Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV------PEKYHKKNPADFIL 193 G Y ++++ FD + +GS S +DE M P++ K++P D +L Sbjct: 148 TGAGATYRVDDDLYFDVHADAGFGSVS--GLDEAAMRAVFAERGGDPDRPGKRHPLDCLL 205 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ P EP W++ GRGRPGWHIEC+A++ +LG FD+ GGG DL+FPHHE +++ Sbjct: 206 WQAERPGEPAWDTRLGRGRPGWHIECAAIALEHLGTTFDVQGGGSDLLFPHHEMSASEAA 265 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 A + A ++H G + +G KMSKS GN + ++ L IRLA+L Sbjct: 266 VATGL-PFAGAFVHTGMVGYQGEKMSKSKGNLVLVSRLRADGH------DPMAIRLALLA 318 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------VLSALYNDLNT 361 HYR ++ + AE L W S + PA V +AL +DL+ Sbjct: 319 HHYRTDWEWHDDEIVVAEQRLGAW--RSAVHRTVAPAGDALLAEVRAALSDDLDA 371 >gi|61216674|sp|Q8NQC4|MSHC_CORGL RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|21324282|dbj|BAB98907.1| Cysteinyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] Length = 404 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 201/387 (51%), Gaps = 35/387 (9%) Query: 5 IKIYNTLERKITEFQ---AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++++T ++++ + A + + MYVCG T YD H+G+A + FD++YR+L Sbjct: 3 LELFDTADQEVRLVETPPAGSDTPVGMYVCGITPYDSTHLGHAATYLAFDLIYRIL--LD 60 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YV+NITD+DD + ERA ++ + D + + F D L+ + P Sbjct: 61 NDHDVHYVQNITDVDDPLFERAARD--GVDWRD----LGTSQINLFRSDMEALSIIPPKD 114 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-SSI---------PNYGSFSRRKID 171 A I ++I +++ ++ G AY + D +SI NY + + + Sbjct: 115 YIGAIESIDEVIEMVKTLLDEGAAYIVEDAEYPDVYASINATDKFGYESNYDAATMAEFF 174 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ G PE+ KKNP D +LW+ + EP WESP+G GRPGWHIECSA++++ LG F Sbjct: 175 AERGGD--PERPGKKNPMDALLWRAAREGEPSWESPFGAGRPGWHIECSAIATNRLGHSF 232 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DLIFPHHE A + A +E+ A ++H G ++ +G KMSKS GN ++ L Sbjct: 233 DIQGGGSDLIFPHHEFSAAHAEAAHGVERMAKHYVHAGMISQDGVKMSKSLGNLEFVSRL 292 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 G IRL + HYR D+ + L AE L+ W + + + + A+ Sbjct: 293 TAAGHEPG------AIRLGVFANHYRGNRDWNAESLATAEQRLATWREAARAATNREDAI 346 Query: 352 L------SALYNDLNTVSAIQALHKLA 372 + L DL+T A+ A+ A Sbjct: 347 AVVEQLRAHLSADLDTPGALAAVDNWA 373 >gi|325179782|emb|CCA14185.1| cysteinyltRNA synthetase putative [Albugo laibachii Nc14] Length = 703 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 154/446 (34%), Positives = 210/446 (47%), Gaps = 81/446 (18%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R F I + Y+CGPTVYD H+G+ R FD R+L Y+G + Sbjct: 35 LKLYNSLTRTKNHFIPIHGKRVLWYMCGPTVYDQTHLGHGRTYTCFDYARRILEDYFGYE 94 Query: 65 CVTYVRNITDIDDKIIERA-----RQEHPS--IPINDAISIIT----------------S 101 V V NITDIDDKII RA +Q +P +P N + + Sbjct: 95 -VELVMNITDIDDKIIIRAAENGWKQANPGEDLPTNTEQRVRKVMEWASEQSAEENMKRT 153 Query: 102 KNTQQ-----FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 K+ Q F+ D L PT R + ++ +I L+Q II +G AYE+N + FDT Sbjct: 154 KDLSQFWEASFLHDMASLGIKIPTVITRVSEYVDDIILLVQGIINNGFAYESNGSVYFDT 213 Query: 157 -----SSIPNYGSFSRRKIDEQKM-----GTRVPE-----KYHKKNPADFILWKRSTPME 201 SS YG I + + G+ K+ +DF+LWK+S E Sbjct: 214 NTFSQSSGKAYGKLLPENIGQSDLLAEGEGSLAANPTLLGNSDKRGASDFVLWKKSKNGE 273 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKV----FDIHGGGLDLIFPHHENEIAQSCCADR 257 P W SPWG GRPGWHIECSAM+S L + DIH GG+DL FPHH+NEIAQS Sbjct: 274 PFWVSPWGPGRPGWHIECSAMASSTLQRFADGQIDIHSGGIDLRFPHHDNEIAQSEAYFN 333 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + N ++H G LN+EG KMSKS NF+ I + L + +R L+ Y Sbjct: 334 FSQWINYFLHTGHLNIEGLKMSKSLKNFVKIKDALMDHS-------SRQLRFLFLLHKYN 386 Query: 318 EPIDFTVQRLTEAEIL----------------------LSKWPQTSTS--KGII--DPAV 351 P+D+ + EA ++ +W Q I+ V Sbjct: 387 VPMDYNDHSVEEAVVVDRFFNEFFQNVKVQLRLLGMTNAQRWEQRDIQLHDAIVACKENV 446 Query: 352 LSALYNDLNTVSAIQALHKLARESTK 377 AL NDLNT AI L +LA+E ++ Sbjct: 447 HQALANDLNTPQAILHLQQLAKEVSR 472 >gi|300781182|ref|ZP_07091036.1| cysteine--tRNA ligase [Corynebacterium genitalium ATCC 33030] gi|300532889|gb|EFK53950.1| cysteine--tRNA ligase [Corynebacterium genitalium ATCC 33030] Length = 412 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 197/389 (50%), Gaps = 47/389 (12%) Query: 5 IKIYNTLERKITEFQAIDPSN---IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +++T +++ E ++ I MYVCG T YD H+G+A + FD+++R L Sbjct: 19 LTLFDTADQQAKEVDTTATTSGGEIGMYVCGITPYDSTHLGHAATYLTFDLVHRQLNA-- 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAP 119 V YV+NITD+DD + ERA + D + + T F D L+ + P Sbjct: 77 NGHSVHYVQNITDVDDPLFERAER--------DGVDWRELGQSQTDLFRTDMEILSVIPP 128 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP--------------NYGSF 165 A + ++I ++Q ++ +G AYE ++ D+ P Y S Sbjct: 129 RDYIGAMESVDEVIAMVQTLLDNGSAYE----LVDDSGDHPVTDIYAPITATEQFGYESN 184 Query: 166 SRRKIDEQKMGTRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 R E+ R PE+ K++P D +LW+ EP WE+ +G GRPGWHIECSA++ Sbjct: 185 LDRATMEEYFAERGGDPERTGKRDPLDALLWRGHREGEPSWEARFGAGRPGWHIECSAIA 244 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 ++ LG F I GGG DL FPHHE A + A + + A ++H G + L+G KMSKS G Sbjct: 245 TNRLGTQFAIQGGGSDLAFPHHEFSAAHAEAAYDVPRMAGHYVHAGMIALDGVKMSKSLG 304 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 N + +++L E A IRLA+ HYR+ DF+ L +AE L+ W + + Sbjct: 305 NLVFVHKLREEGH------DASAIRLAVFGGHYRDDRDFSYAVLDQAEQRLANWREALAN 358 Query: 344 KGIIDPAV------LSALYNDLNTVSAIQ 366 + D AV +AL +DLNT A++ Sbjct: 359 EVSEDEAVGTVDKLRAALADDLNTPEALR 387 >gi|19552728|ref|NP_600730.1| cysteinyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|62390397|ref|YP_225799.1| cysteinyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|41325734|emb|CAF21523.1| PUTATIVE CYSTEINE TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032] Length = 420 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 201/387 (51%), Gaps = 35/387 (9%) Query: 5 IKIYNTLERKITEFQ---AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++++T ++++ + A + + MYVCG T YD H+G+A + FD++YR+L Sbjct: 19 LELFDTADQEVRLVETPPAGSDTPVGMYVCGITPYDSTHLGHAATYLAFDLIYRIL--LD 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YV+NITD+DD + ERA ++ + D + + F D L+ + P Sbjct: 77 NDHDVHYVQNITDVDDPLFERAARD--GVDWRD----LGTSQINLFRSDMEALSIIPPKD 130 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-SSI---------PNYGSFSRRKID 171 A I ++I +++ ++ G AY + D +SI NY + + + Sbjct: 131 YIGAIESIDEVIEMVKTLLDEGAAYIVEDAEYPDVYASINATDKFGYESNYDAATMAEFF 190 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ G PE+ KKNP D +LW+ + EP WESP+G GRPGWHIECSA++++ LG F Sbjct: 191 AERGGD--PERPGKKNPMDALLWRAAREGEPSWESPFGAGRPGWHIECSAIATNRLGHSF 248 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DLIFPHHE A + A +E+ A ++H G ++ +G KMSKS GN ++ L Sbjct: 249 DIQGGGSDLIFPHHEFSAAHAEAAHGVERMAKHYVHAGMISQDGVKMSKSLGNLEFVSRL 308 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 G IRL + HYR D+ + L AE L+ W + + + + A+ Sbjct: 309 TAAGHEPG------AIRLGVFANHYRGNRDWNAESLATAEQRLATWREAARAATNREDAI 362 Query: 352 L------SALYNDLNTVSAIQALHKLA 372 + L DL+T A+ A+ A Sbjct: 363 AVVEQLRAHLSADLDTPGALAAVDNWA 389 >gi|296139847|ref|YP_003647090.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Tsukamurella paurometabola DSM 20162] gi|310947226|sp|D5UPJ5|MSHC_TSUPD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|296027981|gb|ADG78751.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Tsukamurella paurometabola DSM 20162] Length = 414 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 133/412 (32%), Positives = 208/412 (50%), Gaps = 36/412 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T ++ + ++++P + MYVCG T YD H+G+A + FD++ R+LR E Sbjct: 19 LRLYDTSDQAV---RSVNPGAVSGMYVCGITPYDATHLGHAATYLTFDLINRVLRANGHE 75 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD + ERA ++ I D + ++ T F +D L LAP Sbjct: 76 --VHYVQNVTDVDDPLFERAARD--GIDWRD----LGARETDLFCEDMQALRVLAPQDYI 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG--SFSRRKIDEQKMGT 177 A I ++I L+ ++ +G AY ++ ++ + T + +G S R E+ Sbjct: 128 GAVESIDEVIALVGRLLENGAAYIVDDPEFPDVYYRTDATEQFGYESGYDRATMERFFAE 187 Query: 178 RV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 R P++ K++P D +LW+ + P EP W SP G GRPGWHIEC+A++ + LG FDI G Sbjct: 188 RGGDPDRPGKRDPLDALLWRAARPGEPSWPSPQGPGRPGWHIECAAIAQNRLGVGFDIQG 247 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHHE A + A ++H + L+G KMSKS GN + ++ L Sbjct: 248 GGSDLIFPHHEFSAAHVEADTGERRFARHYVHAAMIGLDGEKMSKSRGNLVFVSTLRRAG 307 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA- 354 PA IRL + HYR ++ + L A+ L W + D A L Sbjct: 308 VD-----PA-AIRLGLFEGHYRTDRAWSDEVLARAQARLDLWRNAFAAASSPDGAELVGR 361 Query: 355 ----LYNDLNTVSAIQALHKLARESTKNHDLLP-----IFNASAHILGIEVC 397 L +DL+T A+ AL A + + P + A +LG+ V Sbjct: 362 LRRYLADDLDTPKALSALDAWAHRAVTSGGPDPDGPSTVATAVDALLGVAVS 413 >gi|288923721|ref|ZP_06417819.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Frankia sp. EUN1f] gi|288344927|gb|EFC79358.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Frankia sp. EUN1f] Length = 401 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 22/316 (6%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCG T YD H+G+A + +D++ R+LR E V YV+N+TD+DD ++ERA ++ Sbjct: 12 LYVCGITPYDATHLGHAFTYLTYDLVQRVLRDAGHE--VRYVQNVTDVDDPLLERADRD- 68 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 I D + + F D T L L P H +P ++ +I ++ G AY Sbjct: 69 -GIDWRD----LARREIDLFRADMTALRVLPPDHYVGVVEAVPLIVEMIGQLVERGAAYS 123 Query: 148 ANNEIIFDTSSIPNYGSFSRRK------IDEQKMGTRVPEKYHKKNPADFILWKRSTPME 201 ++ F SS +G + + ++ G P + KK+P D +LW+ P E Sbjct: 124 VEGDLYFSVSSAKEFGEVAGLSPAQMLALAAERGGD--PGRPGKKDPLDPLLWRAERPGE 181 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 P W SP+G GRPGWH+ECSA++ H+LG DI GGG DL+FPHHE A + A Sbjct: 182 PSWPSPFGPGRPGWHVECSAIARHHLGAPIDIQGGGSDLVFPHHECSAAHAEVAGGTAPF 241 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 A ++H + L+G KMSKS GN ++ LL G + PA IRLA+L H+ + Sbjct: 242 ARAYVHTAMVGLDGHKMSKSRGNLEFVSRLL-----AGGADPA-AIRLALLHHHHTVEWE 295 Query: 322 FTVQRLTEAEILLSKW 337 +T L A++++ +W Sbjct: 296 WTPADLPAADLMVRRW 311 >gi|302527180|ref|ZP_07279522.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. AA4] gi|302436075|gb|EFL07891.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. AA4] Length = 412 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 199/388 (51%), Gaps = 36/388 (9%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 RMYVCG T YD H+G+A + FD++ R+ R E V YV+N+TDID+ ++ERA ++ Sbjct: 39 RMYVCGITPYDATHLGHAATYLAFDLVNRIWRDNGHE--VHYVQNVTDIDEPLLERAERD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 +D ++ + T F +D L L P A IP+++ +I ++ G AY Sbjct: 97 ------SDDWIVLGMRETALFREDMEALRVLPPRQFVGAVEAIPEIVEVIAKLLADGSAY 150 Query: 147 EANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRV------PEKYHKKNPADFILWKR 196 A++ ++ FD ++ +G S D + M P++ K++P D +LW+ Sbjct: 151 RADDAEFPDVYFDHNATGRFGYES--SYDAETMAKFFAERGGDPDRPGKRHPLDALLWRV 208 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 + EP WES G GRPGWHIECSA++ + LG FD+ GGG DLIFPHHE A + Sbjct: 209 AREGEPSWESELGAGRPGWHIECSAIAVNRLGLGFDVQGGGSDLIFPHHEYSAAHAEAVA 268 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 A ++H G + L+G KMSKS GN + ++ L + G PA IRLA+ HY Sbjct: 269 ADHPFARHYVHAGMIGLDGEKMSKSRGNLVFVSRL----RADGVD-PA-AIRLALFAGHY 322 Query: 317 REPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-----LYNDLNTVSAIQALH-- 369 RE +T Q L +A+ L++W + D A L +DLNT A+ A+ Sbjct: 323 REDRAWTDQLLVDAQERLARWREAVALPAGPDAEDTVARLRDHLSDDLNTPKALTAIDAW 382 Query: 370 ---KLARESTKNHDLLPIFNASAHILGI 394 L R+ T I A +LGI Sbjct: 383 VTSALRRDGTDQAAPGLIKEAVDALLGI 410 >gi|324997324|ref|ZP_08118436.1| cysteinyl-tRNA synthetase [Pseudonocardia sp. P1] Length = 412 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 190/361 (52%), Gaps = 27/361 (7%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD++ RL R E V YV+N+TDID+ ++ERA ++ Sbjct: 40 MYVCGITPYDATHLGHAATYLAFDLVNRLWRDLGHE--VHYVQNVTDIDEPLLERAERD- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 D ++ + T F +D L L P A IP++ L++ ++ G AY Sbjct: 97 -----QDDWVVLGLRETALFREDMEALRVLPPRQFVGAVEAIPEIAELVEKLVASGAAYR 151 Query: 148 ANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRV----PEKYHKKNPADFILWKRSTP 199 ++ ++ D S+ +G S ++ +R P++ K+NP D +LW+ + P Sbjct: 152 LDDPEYPDVYHDVSATGRFGYESNYDLETMLQFSRERGGDPDRPGKRNPLDPLLWRMARP 211 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP WES GRGRPGWH+EC+A+ + LG+ D++GGG DLIFPHHE + Sbjct: 212 GEPAWESGLGRGRPGWHVECAAIGLNRLGQQIDLNGGGSDLIFPHHECGALHAESLTGEH 271 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L+G KMSKS GN + +++L + V+R+A+L HYR+ Sbjct: 272 PFARHYVHTGMIGLDGEKMSKSKGNLVFVSKLRSSGV------DPNVVRVALLDGHYRDD 325 Query: 320 IDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-----LYNDLNTVSAIQALHKLARE 374 +T + + E +++W + D A L A L +DL+T A+ A+ A E Sbjct: 326 RSWTDEVHAKGEGRVARWREAVELDAGPDAAELVAKLRTHLADDLDTPGALAAVDAWADE 385 Query: 375 S 375 + Sbjct: 386 A 386 >gi|153217385|ref|ZP_01951136.1| cysteinyl-tRNA synthetase [Vibrio cholerae 1587] gi|124113603|gb|EAY32423.1| cysteinyl-tRNA synthetase [Vibrio cholerae 1587] Length = 314 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/327 (36%), Positives = 166/327 (50%), Gaps = 37/327 (11%) Query: 157 SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 S YG S++ +D+ + G RV + K++P DF+LWK S P EP WESPWG GRPGWH Sbjct: 2 SQYSEYGKLSKQDLDQLQAGARVDIEAAKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWH 61 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECSAM+S LG FDIHGGG DL FPHHENEIAQSCCA + N W+H+G + ++ Sbjct: 62 IECSAMNSSILGNHFDIHGGGSDLQFPHHENEIAQSCCAHDTQYV-NTWMHSGMVMVDKE 120 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 KMSKS GNF TI ++L + A +R ++ HYR ++++ + L +A L + Sbjct: 121 KMSKSLGNFFTIRDVL-------GHYDAETVRYFLMSGHYRSQLNYSEENLNQARASLER 173 Query: 337 WPQTSTSKGIIDPAV---------LSALYNDLNTVSAIQALHKLARE--------STKNH 379 PA +A+ +D NT A L +ARE T Sbjct: 174 LYNALRGLDRSVPAAGGEEYVTRFTAAMNDDFNTPEAYSVLFDMAREINRLKSEDMTNAS 233 Query: 380 DLLPIFNASAHILGI------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 L + A ++GI + + IE L++ R K +++AD R Sbjct: 234 ALGSLMRELADVIGILYQEPEAFFQGSAEDEDAAQIEALIKLRNDSRATKDWANADLARD 293 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 +L G +LED G T W++K Sbjct: 294 KLNEMGIVLED------GPNGTTWRRK 314 >gi|320165548|gb|EFW42447.1| cysteine-tRNA ligase [Capsaspora owczarzaki ATCC 30864] Length = 582 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 207/413 (50%), Gaps = 66/413 (15%) Query: 6 KIYNTLERKITEFQAID------------PSNIRMYVCGPTVYDFAHIGNARPMIVFDVL 53 + YN L R + + D P+ + Y+CGPTVYD AH+G+A + FD++ Sbjct: 72 RAYNALTRSVAPLLSPDSNSNSHTRSDLTPNTLSWYICGPTVYDEAHLGHASCYVRFDII 131 Query: 54 YRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 R+L G + V + +TDIDDKII +A N + S + + + FV+D Sbjct: 132 RRILTDRAGLR-VFQLMGMTDIDDKIIAKAAS------TNRSHSEVARQFEESFVQD--- 181 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPN-YGSFS-RRKI 170 +A P R T IP + I NII G Y A++ + FDT + + YG Sbjct: 182 MAVRPPDAISRVTESIPAIQQFITNIIERGFGYTASDGSVYFDTQAFGSRYGKLRPSATA 241 Query: 171 DEQKMGTRVPEKYHKKNPADFILWKRS-TPMEPGWESPW--GRGRPGWHIECSAMSSHYL 227 D+ P +K++P DF LWK + + EPG+ SP+ G GRPGWHIECSA++ Sbjct: 242 DKSSAEATEPADSNKRSPRDFALWKATKSASEPGYPSPFSQGLGRPGWHIECSAIA--VF 299 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G+ DIH GG+DL+FPHHENEIAQ +++ A+ + H G L + KMSKS NF+T Sbjct: 300 GQHLDIHSGGIDLLFPHHENEIAQCEAHHGVDQWAHHFWHTGHLLINKEKMSKSLNNFVT 359 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTEAEILLSKWP---QTS 341 I + L RS+ + RL L+T+YR+ + F T+Q E L+++ QT+ Sbjct: 360 IKDFL-------RSYTSNQFRLFCLLTNYRQSVHFDDKTMQGAIALERKLAQFGAVLQTA 412 Query: 342 TSKGI-----------------------IDPAVLSALYNDLNTVSAIQALHKL 371 + G+ + V +AL ND +T +A+QA L Sbjct: 413 GATGVAWDSPATRAWGTSEVALRDRILTFEATVDAALCNDFDTSTAMQAAMTL 465 >gi|203288037|ref|YP_002223052.1| cysteinyl-tRNA synthetase [Borrelia recurrentis A1] gi|201085257|gb|ACH94831.1| cysteinyl-tRNA synthetase [Borrelia recurrentis A1] Length = 485 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 155/499 (31%), Positives = 241/499 (48%), Gaps = 68/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + ++E + + S ++Y CGPTVY++AHIGN R I D+L + L+ + + Sbjct: 7 LKLYNTKTKCLSEVKNL--SETKIYACGPTVYNYAHIGNLRTYIFEDLLIKSLKLF--KY 62 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+++ A++ + + D I+ T+ F D +L Sbjct: 63 NVNYAMNITDIGHLTGDFDDGEDKVVKAAKER--GLTVYD----ISRFFTKAFFDDCKKL 116 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-- 172 L P A+ +I MI +++ + +G Y N + FD S NYG + +++ Sbjct: 117 NILYPDKVLVASEYILDMIEVVKVLEKNGFTYFVNGNVYFDISRFKNYGQMAGINLNDIN 176 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + +RV + K+N +DF+LW ++ E W+SPWG G P WH+EC+ M+ +Y Sbjct: 177 ENSVSRVELDFSKRNKSDFVLWFTNSKFQNQEMKWDSPWGFGYPSWHLECATMNLNYFNS 236 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 +IH GG+D I HH NEIA C + +++IH FL +E KMSKSN +FITI Sbjct: 237 TLNIHLGGIDHIRVHHVNEIAIMECY-LGKNWCDMFIHGEFLIMENEKMSKSNNDFITIK 295 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSK 344 LE + F +P+ R L HYR + FT L ++ LLSK +S Sbjct: 296 N-LEDEGF------SPLDFRYFCLTAHYRTQLKFTFHSLKACKVARENLLSKLTSCYSSL 348 Query: 345 GIIDPAVLSA--------------------LYNDLNTVSAIQALHKLARE---STKNHDL 381 D ++LS + DLN + L + R+ S+ + Sbjct: 349 SQFDISLLSQDDENIEFILEHKYYDSFLERIAFDLNIPKVLALLWDIVRDNNLSSLSKLK 408 Query: 382 LPIFNASAHILGI--EVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLES 437 L LG+ E+ +E I I + L++ER + K F AD IR+ S Sbjct: 409 LAFKFDEVLSLGLREEILREIDMSRIVIDDVMNSLIEERRLAKLKKDFKRADEIREYCRS 468 Query: 438 KGFILEDYKNPDNGQRMTR 456 KGFIL D + G ++ R Sbjct: 469 KGFILID---TEEGTKVKR 484 >gi|321309540|ref|YP_004191869.1| cysteinyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1] gi|319801384|emb|CBY92030.1| cysteinyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1] Length = 424 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 220/459 (47%), Gaps = 65/459 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+Y++LE+ + P + ++Y+CGPTVYD+ HIGN P+I+FD L R L Y + Sbjct: 3 LKLYDSLEQTLKTL----PKDPKIYLCGPTVYDYVHIGNVAPLIIFDFLIRYLEY--KRE 56 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 Y+ NITDIDDKI+ +A++ ++ I S+ T ++ L + PT P+ Sbjct: 57 NYLYIHNITDIDDKIVNKAKE------LSLKEEEIASEYTDHYLWVMNALNVIKPTLMPK 110 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HI + + +++ G A+ +++ + I NYG S++ ++ Sbjct: 111 VSDHIEDIQRDVSSLLESGFAHFEGKDVVMNIGKIKNYGCLSKQNLN------------M 158 Query: 185 KKNPADFILWKRSTPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+ +F LWK ME G W+SPWG GRPGWH EC + + Y D+HGGG+DL F Sbjct: 159 LKSNENFCLWKY---MENGKTWKSPWGDGRPGWHSECFSFINRYSRGGVDLHGGGIDLKF 215 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE A S A + + IW++ G L + K+SKS + +LLE + Sbjct: 216 PHHENENAHS-EALYSKSLSKIWMYIGHLQTQDGKISKSTNKKFLVKDLLE-------KY 267 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTE--------------AEILLSKWPQTSTSKGIID 348 A +R L + Y P+ R+ E A+ L S G +D Sbjct: 268 SANSLRYLFLTSKYSLPLLVDESRIEEVGKEFDNYLLTINQAKTYLYLNGGEINSAGDLD 327 Query: 349 PAVLSALYNDLNTVSAIQALHKLARE---STKNHDLLPIFNASAHI------LGIEVCKE 399 LS NDLN + L KL +E K + + + + LG ++ E Sbjct: 328 SEFLSIFENDLNLPEVLTWLQKLKKEVLTGIKEKKIEVVSKGGSQLIRHLEFLGFKIEDE 387 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 H +N++ L+ E L K +S AD IR+ L+ + Sbjct: 388 HTVENVA-----LIDEWKNSLANKDYSKADEIRELLKRR 421 >gi|227504344|ref|ZP_03934393.1| cysteinyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] gi|227198992|gb|EEI79040.1| cysteinyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] Length = 412 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 198/385 (51%), Gaps = 35/385 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR-LLRYYYGE 63 + +Y++ + I + + + MYVCG T YD H+G+A + FD+ YR LL Y Sbjct: 19 LHLYDSADETIRKVE-VSGETATMYVCGITPYDSTHLGHAATYLTFDLAYRQLLDNGY-- 75 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+NITD+DD + ERA ++ D + TS+ F D L+ L P Sbjct: 76 -QVHYVQNITDVDDPLFERAERDGV-----DWRELGTSQ-INLFRSDMELLSVLPPQDYV 128 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDE------Q 173 A I ++ ++ +I G AY ++ ++ + N+G S E + Sbjct: 129 GAMEVIDEVTEMVSKLIDAGAAYVVDDPEFPDVYASIDATKNFGYESNYTAAEMAEFFAE 188 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + G P++ K+NP D ++W+ EP W+SP+G GRPGWHIECSA++++ LG FDI Sbjct: 189 RGGD--PDRPGKRNPLDALVWRAHREGEPAWDSPFGPGRPGWHIECSAIATNRLGAPFDI 246 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL FPHHE A + A +E+ A +++H G + L+G KMSKS GN + +++L+E Sbjct: 247 QGGGSDLKFPHHEFSAAHAEAALGVERMAQVYVHTGMIGLDGVKMSKSLGNLVFVHKLVE 306 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----- 348 IRL + HYR D++ + L +A L W + G ++ Sbjct: 307 AGV------DPSAIRLGVFAGHYRAERDWSDEVLEQANERLGVWRDALQNPGSLEVAQEL 360 Query: 349 -PAVLSALYNDLNTVSAIQALHKLA 372 A+ AL NDL+T + + A+ A Sbjct: 361 VAAIRGALANDLDTPAVLAAVDAWA 385 >gi|195436238|ref|XP_002066076.1| GK22127 [Drosophila willistoni] gi|194162161|gb|EDW77062.1| GK22127 [Drosophila willistoni] Length = 491 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 171/321 (53%), Gaps = 29/321 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 + Y CGPTVYD AH+G+A + D++ R+LR Y+ VT + NITD+DDKII RAR+ Sbjct: 2 VSWYTCGPTVYDSAHLGHASTYVKVDIIQRILRDYFRINLVTAM-NITDVDDKIIRRARE 60 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + + +F +D L P + + +I + I +I + A Sbjct: 61 SGCNWLD------MARAYEAEFREDMLSLNVQPPDIRSHVSANIDNIQRFINELISNEQA 114 Query: 146 YEANN-EIIFDTSSIPNYGSFSRRKIDEQ----KMGTRVPEKYHKKNPADFILWK-RSTP 199 Y + + FD S +YG R ID + GT HK++ +DF LWK + P Sbjct: 115 YVTKDYSVYFDVSKAVHYGKLQRADIDSSTEPGEQGT------HKRHRSDFALWKAKKFP 168 Query: 200 MEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 EP W + WG GRPGWHIECSA++ + G+ D H GGLDL FPHHENE AQ C Sbjct: 169 DEPSWPASWGGEGRPGWHIECSAIAGMFFGRRLDFHAGGLDLRFPHHENEEAQCCARYET 228 Query: 259 EKTANIWIHNGFLNLEG--RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 ++ N W+H G L++ G KMSKS N I+++ELL + + A R+A L+++Y Sbjct: 229 DQWVNYWMHTGQLHVAGDKDKMSKSLKNTISVSELL-------KHYTADEFRMACLLSNY 281 Query: 317 REPIDFTVQRLTEAEILLSKW 337 R + ++ Q + A L K+ Sbjct: 282 RNAMPYSDQLMITARQTLQKF 302 >gi|239978594|ref|ZP_04701118.1| cysteinyl-tRNA synthetase [Streptomyces albus J1074] Length = 385 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 196/362 (54%), Gaps = 34/362 (9%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TD+DD ++ERA Sbjct: 15 RLYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPLLERA--- 69 Query: 87 HPSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 + D + + + + T F +D T L + P A IP++I L++ + G Sbjct: 70 -----VRDGVEWTGLAERETALFREDMTALRMIPPRDYIGAVEAIPRIIPLVERLRDAGA 124 Query: 145 AYEANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 AYE ++ F + P++G S R + ++ G PE+ KKNP D +LW + Sbjct: 125 AYELEGDLYFSVEADPHFGEVSHLDATAMRLLSAERGGD--PERPGKKNPLDPMLWMAAR 182 Query: 199 PMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W+ G+GRPGWHIEC A++ +LG FD+ GGG DL+FPHHE + + A Sbjct: 183 EGEPSWDGGSLGQGRPGWHIECVAIALDHLGMGFDLQGGGSDLVFPHHEMGASHAHAATG 242 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A+ ++H G + L+G KMSKS GN + ++ L ++ G PA IRLA+ HYR Sbjct: 243 EYPFAHSYVHAGMVALDGEKMSKSKGNLVFVSAL---RRAGVE--PA-AIRLALHAHHYR 296 Query: 318 EPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL 371 ++T L EA L++W P + +++ V +AL +DL+ +A++A+ Sbjct: 297 ADWEWTDATLQEATRRLARWRAAVSRPDGPDASAVVE-QVRAALADDLDAPAALRAVDAW 355 Query: 372 AR 373 A+ Sbjct: 356 AQ 357 >gi|145295647|ref|YP_001138468.1| cysteinyl-tRNA synthetase [Corynebacterium glutamicum R] gi|310947181|sp|A4QEA0|MSHC_CORGB RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|140845567|dbj|BAF54566.1| hypothetical protein [Corynebacterium glutamicum R] Length = 420 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 201/387 (51%), Gaps = 35/387 (9%) Query: 5 IKIYNTLERKITEFQ---AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++++T ++++ + A + + MYVCG T YD H+G+A + FD++YR+L Sbjct: 19 LELFDTADQEVRLVETPPAGSDTPVGMYVCGITPYDSTHLGHAATYLAFDLIYRIL--LD 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YV+NITD+DD + ERA ++ + D + + F D L+ + P Sbjct: 77 NDHDVHYVQNITDVDDPLFERAARD--GVDWRD----LGTSQINLFRSDMEALSIIPPKD 130 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-SSI---------PNYGSFSRRKID 171 A I ++I +++ ++ G AY + D +SI NY + + + Sbjct: 131 YIGAIESIDEVIEMVKTLLDEGAAYIVEDAEYPDVYASINATDKFGYESNYDAATMAEFF 190 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ G P++ KKNP D +LW+ + EP WESP+G GRPGWHIECSA++++ LG F Sbjct: 191 AERGGD--PDRPGKKNPMDALLWRAAREGEPSWESPFGAGRPGWHIECSAIATNRLGHSF 248 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DLIFPHHE A + A +E+ A ++H G ++ +G KMSKS GN ++ L Sbjct: 249 DIQGGGSDLIFPHHEFSAAHAEAAHGVERMAKHYVHAGMISQDGVKMSKSLGNLEFVSRL 308 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 G IRL + HYR D+ + L AE L+ W + + + + A+ Sbjct: 309 TAAGHEPG------AIRLGVFANHYRGNRDWNAESLATAEQRLATWREAARAATNREDAI 362 Query: 352 L------SALYNDLNTVSAIQALHKLA 372 + L DL+T A+ A+ A Sbjct: 363 AVVEQLRAHLSADLDTPGALAAVDNWA 389 >gi|291450490|ref|ZP_06589880.1| cysteinyl-tRNA synthetase [Streptomyces albus J1074] gi|291353439|gb|EFE80341.1| cysteinyl-tRNA synthetase [Streptomyces albus J1074] Length = 409 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 196/362 (54%), Gaps = 34/362 (9%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TD+DD ++ERA Sbjct: 39 RLYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPLLERA--- 93 Query: 87 HPSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 + D + + + + T F +D T L + P A IP++I L++ + G Sbjct: 94 -----VRDGVEWTGLAERETALFREDMTALRMIPPRDYIGAVEAIPRIIPLVERLRDAGA 148 Query: 145 AYEANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 AYE ++ F + P++G S R + ++ G PE+ KKNP D +LW + Sbjct: 149 AYELEGDLYFSVEADPHFGEVSHLDATAMRLLSAERGGD--PERPGKKNPLDPMLWMAAR 206 Query: 199 PMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W+ G+GRPGWHIEC A++ +LG FD+ GGG DL+FPHHE + + A Sbjct: 207 EGEPSWDGGSLGQGRPGWHIECVAIALDHLGMGFDLQGGGSDLVFPHHEMGASHAHAATG 266 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A+ ++H G + L+G KMSKS GN + ++ L ++ G PA IRLA+ HYR Sbjct: 267 EYPFAHSYVHAGMVALDGEKMSKSKGNLVFVSAL---RRAGVE--PA-AIRLALHAHHYR 320 Query: 318 EPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKL 371 ++T L EA L++W P + +++ V +AL +DL+ +A++A+ Sbjct: 321 ADWEWTDATLQEATRRLARWRAAVSRPDGPDASAVVE-QVRAALADDLDAPAALRAVDAW 379 Query: 372 AR 373 A+ Sbjct: 380 AQ 381 >gi|120404450|ref|YP_954279.1| cysteinyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] gi|310947205|sp|A1TAS3|MSHC_MYCVP RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|119957268|gb|ABM14273.1| cysteinyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] Length = 429 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 125/390 (32%), Positives = 199/390 (51%), Gaps = 39/390 (10%) Query: 4 KIKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y++ +R++ + + P + MYVCG T YD H+G+A + FD+++RL R Sbjct: 35 QLRLYDSADRQV---RPVAPGATATMYVCGITPYDATHLGHAATYLTFDLVHRLWRD--S 89 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPT 120 V YV+NITD+DD + ERA++ D I + + T+ F +D L L P Sbjct: 90 GHDVHYVQNITDVDDPLFERAQR--------DGIGWRELGDRETELFREDMAALRVLPPR 141 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKID----- 171 AT I +++ L++ ++ G AY ++ ++ F + +G S D Sbjct: 142 DYVAATEAIAEVVELVEKMLAAGAAYVVDDPQYPDVYFRADATVQFGYESGYDRDTMLAL 201 Query: 172 -EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 ++ G P++ K +P D +LW P EP W SP+G GRPGWH+EC+A++ +G Sbjct: 202 FAERGGD--PDRPGKSDPLDALLWLAERPGEPSWPSPFGPGRPGWHVECAAIALSRIGTG 259 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DI GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + +++ Sbjct: 260 LDIQGGGSDLIFPHHEFSAAHAECVTGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSQ 319 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 L PA IRL + HYR+ ++ L EA L +W + G D Sbjct: 320 LRRDGVD-----PA-AIRLGLFAGHYRDDRFWSPAVLDEALARLHRWRSATALAGAPDAT 373 Query: 351 VLSA-----LYNDLNTVSAIQALHKLARES 375 + A L +DL+T A+ AL A ++ Sbjct: 374 DVVARVRRYLADDLDTPKALAALDGWATDA 403 >gi|227549273|ref|ZP_03979322.1| cysteinyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291] gi|227078592|gb|EEI16555.1| cysteinyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291] Length = 404 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/408 (32%), Positives = 211/408 (51%), Gaps = 36/408 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+Y+T ++ + ++ + MYVCG T YD H+G+A + FD++ R L Sbjct: 18 ELKLYDTADQVVKPVDTTPNAHGEVGMYVCGITPYDSTHLGHAATYLTFDLVQRQL-IAN 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAP 119 G + V YV+NITD+DD + ERA + D + + F D L + P Sbjct: 77 GHR-VHYVQNITDVDDPLFERAAR--------DGVDWRELGQSQIDLFRSDMGILGVIPP 127 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIF---DTSSIPNYGSFSRRKIDEQKMG 176 A + ++I ++ ++ AY ++ I+ D ++ Y S R+ E Sbjct: 128 RDYIGAIESVNEVIEMVGKLLDASAAYRLDHGDIYASIDATAQFGYESNYSREEMETYFA 187 Query: 177 TRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 R PE+ K++P D ++W+ EP W+SP+G GRPGWHIECSA++++ LG F I Sbjct: 188 ERGGDPERPGKRDPLDALVWRGHRDGEPAWDSPFGPGRPGWHIECSAIATNRLGATFAIQ 247 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE A + A R + A ++H G + L+G KMSKS GN + +++L E Sbjct: 248 GGGSDLAFPHHEFSAAHAEAAYRQRRMATHYVHAGMIALDGVKMSKSLGNLVFVHKLTE- 306 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDPAVL- 352 + A IRLA+ HYR DF+ L AE L++W + G +D AV+ Sbjct: 307 -----KGHEASAIRLAVFAEHYRTDRDFSDAILVAAEQRLARWRDNLARPVGQVDAAVVV 361 Query: 353 ----SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV 396 +AL +DL+T +A+ ++ E+ +H+ I A +LG+ V Sbjct: 362 DKLRAALADDLDTAAAL----RIIDEAAGDHE-GAIARAIDGLLGVRV 404 >gi|145223636|ref|YP_001134314.1| cysteinyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] gi|310947196|sp|A4TB85|MSHC_MYCGI RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|145216122|gb|ABP45526.1| cysteinyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] Length = 444 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/397 (31%), Positives = 200/397 (50%), Gaps = 41/397 (10%) Query: 4 KIKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++++++ +R+I + + P + MYVCG T YD H+G+A + FD++ R+ R Sbjct: 50 QLRLFDSADRQI---RPVSPGATATMYVCGITPYDATHLGHAATYLTFDLVNRVWRDSGH 106 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPT 120 + V YV+NITD+DD + ERA + D I + + T F +D L + P Sbjct: 107 D--VHYVQNITDVDDPLFERAAR--------DGIGWRELGDRETDLFREDMAALRVVPPR 156 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMG 176 AT I ++I +++ ++ G AY ++ ++ F + +G S D + M Sbjct: 157 DYVAATEAIAEVIEVVEKLLASGAAYVVDDAQYPDVYFHAGATVQFGYES--GYDRETML 214 Query: 177 TRV------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 P++ K +P D +LW+ P EP W SP+G GRPGWH+EC+A++ +G V Sbjct: 215 ALFAERGGDPDRPGKSDPLDALLWRAERPEEPSWPSPFGPGRPGWHVECAAIAMTRIGNV 274 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DI GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + +++ Sbjct: 275 LDIQGGGSDLIFPHHEFSSAHAECVSGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSQ 334 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 L G IRL + HYR+ ++ L EA+ L +W + G D Sbjct: 335 LRRDGVDPG------AIRLGLFAGHYRQDRYWSPAVLDEAQQRLHRWRSATALDGAPDAT 388 Query: 351 VLSA-----LYNDLNTVSAIQALHKLARE--STKNHD 380 + A L +DL+T A+ A+ A + S HD Sbjct: 389 DVVARVRRYLADDLDTPKALAAIDGWAEDTLSYGGHD 425 >gi|315443963|ref|YP_004076842.1| cysteinyl-tRNA synthetase [Mycobacterium sp. Spyr1] gi|315262266|gb|ADT99007.1| cysteinyl-tRNA synthetase [Mycobacterium sp. Spyr1] Length = 412 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/397 (31%), Positives = 200/397 (50%), Gaps = 41/397 (10%) Query: 4 KIKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++++++ +R+I + + P + MYVCG T YD H+G+A + FD++ R+ R Sbjct: 18 QLRLFDSADRQI---RPVSPGATATMYVCGITPYDATHLGHAATYLTFDLVNRVWRDSGH 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPT 120 + V YV+NITD+DD + ERA + D I + + T F +D L + P Sbjct: 75 D--VHYVQNITDVDDPLFERAAR--------DGIGWRELGDRETDLFREDMAALRVVPPR 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMG 176 AT I ++I +++ ++ G AY ++ ++ F + +G S D + M Sbjct: 125 DYVAATEAIAEVIEVVEKLLASGAAYVVDDAQYPDVYFHAGATVQFGYES--GYDRETML 182 Query: 177 TRV------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 P++ K +P D +LW+ P EP W SP+G GRPGWH+EC+A++ +G V Sbjct: 183 ALFAERGGDPDRPGKSDPLDALLWRAERPEEPSWPSPFGPGRPGWHVECAAIAMTRIGNV 242 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DI GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + +++ Sbjct: 243 LDIQGGGSDLIFPHHEFSSAHAECVSGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSQ 302 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 L G IRL + HYR+ ++ L EA+ L +W + G D Sbjct: 303 LRRDGVDPG------AIRLGLFAGHYRQDRYWSPAVLDEAQQRLHRWRSATALDGAPDAT 356 Query: 351 VLSA-----LYNDLNTVSAIQALHKLARE--STKNHD 380 + A L +DL+T A+ A+ A + S HD Sbjct: 357 DVVARVRRYLADDLDTPKALAAIDGWAEDTLSYGGHD 393 >gi|297195348|ref|ZP_06912746.1| cysteinyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486] gi|297152754|gb|EDY63189.2| cysteinyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486] Length = 366 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 194/370 (52%), Gaps = 34/370 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATDGLV---TLDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA ++ + + + T F +D T L L P H Sbjct: 72 TKRQVHYVQNVTDVDDPLLERATRD------GHDWTELAERETALFREDMTALRMLPPQH 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ + G AYE ++ F S P++G SR R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLRDAGAAYELEGDVYFSVESDPHFGEVSRLDAEAMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G PE+ KKNP D +LW + EP W+ GRGRPGWHIEC A++ +LG FD+ Sbjct: 186 GD--PERPGKKNPLDPMLWMAAREGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + +++L Sbjct: 244 GGGSDLAFPHHEMGASHAQALTGEHPFAKAYVHAGMVALDGAKMSKSKGNLVFVSKLRRD 303 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGIID 348 PA IRLA+L HYR ++T L EA + +W P ++ +++ Sbjct: 304 GVD-----PA-AIRLALLSHHYRADWEWTDAVLREAVERVGRWRAAVSRPDGPSADALVE 357 Query: 349 PAVLSALYND 358 + +AL +D Sbjct: 358 -EIRAALADD 366 >gi|158316655|ref|YP_001509163.1| cysteinyl-tRNA synthetase [Frankia sp. EAN1pec] gi|310947183|sp|A8LH67|MSHC_FRASN RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|158112060|gb|ABW14257.1| Cysteine--tRNA ligase [Frankia sp. EAN1pec] Length = 444 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/319 (34%), Positives = 167/319 (52%), Gaps = 22/319 (6%) Query: 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 +R+Y CG T YD H+G+A + +D++ R+LR E V YV+N+TD+DD ++ERA Sbjct: 60 TVRLYACGITPYDATHLGHAFTYLTYDLVQRVLRDAGHE--VRYVQNVTDVDDPLLERAT 117 Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 ++ I D + + F D T L L P H + ++ ++ ++ G Sbjct: 118 RD--GIDWRD----LARREIDLFRADMTALRILPPDHYVGVVEAVGLIVDMVSQLVERGA 171 Query: 145 AYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV------PEKYHKKNPADFILWKRST 198 AY + ++ F ++ P++G + +D +M P + KK+P D +LW+ Sbjct: 172 AYSVDGDLYFSVAAAPDFGQVA--HLDPAQMLVSCAEHGGDPGRPGKKDPLDPLLWRAER 229 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 P EP W SP+G GRPGWH+ECSA++ HYLG DI GGG DL FPHHE A + A+ Sbjct: 230 PGEPSWPSPFGPGRPGWHVECSAIARHYLGATIDIQGGGSDLAFPHHECSAAHAEVANGA 289 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 A ++H ++L+G KMSKS GN ++ LL R IRLA+L H+ Sbjct: 290 RPFARAYVHTALVSLDGHKMSKSRGNLEFVSRLL------ARGADPAAIRLALLQHHHTV 343 Query: 319 PIDFTVQRLTEAEILLSKW 337 ++T + A L +W Sbjct: 344 EWEWTAAAMPAAAERLDRW 362 >gi|294628495|ref|ZP_06707055.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. e14] gi|292831828|gb|EFF90177.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. e14] Length = 409 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 184/343 (53%), Gaps = 27/343 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + P + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGLVTLT---PGPVARLYVCGITPYDATHMGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA+++ D +++ + T F +D T L L P H Sbjct: 72 TKRQVHYVQNVTDVDDPLLERAQRDD-----LDWVAL-AERETALFREDMTALRMLPPRH 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ + G AYE + ++ F S P++GS SR R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLRDLGAAYELDGDVYFSVESDPHFGSVSRLDAAAMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P++ KKNP D +LW + EP W+ G GRPGWHIEC A++ +LG FD+ Sbjct: 186 GD--PDRPGKKNPLDPMLWMAAREGEPSWDGGSLGPGRPGWHIECVAIALDHLGMGFDVQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 244 GGGSDLAFPHHEMGASHAQVLTGEFPMAKAYVHAGMVALDGEKMSKSKGNLVFVSRLRRD 303 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 PA IRLA+L HYR ++T Q L +A L +W Sbjct: 304 GVD-----PA-AIRLALLAHHYRSDWEWTDQVLQDAVARLGRW 340 >gi|41407974|ref|NP_960810.1| cysteinyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis K-10] gi|61216571|sp|Q73YS9|MSHC_MYCPA RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|41396328|gb|AAS04193.1| CysS2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 415 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/415 (31%), Positives = 207/415 (49%), Gaps = 39/415 (9%) Query: 4 KIKIYNTLERKI--TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++Y+T +R++ A S MYVCG T YD H+G+A + FD++YR ++ Sbjct: 18 ELRLYDTSDRQVRPVAAGAGPGSAATMYVCGITPYDATHLGHAATYLAFDLIYR--QWLD 75 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V YV+N+TD+DD ++ERA ++ + + F +D L LAP Sbjct: 76 LGHDVHYVQNVTDVDDPLLERAARDGVDW------RALAEREVSLFREDMAALRILAPRD 129 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYG---SFSRR---KIDE 172 AT I ++ L++ ++ G AY + E I + + +G + R ++ Sbjct: 130 YVGATEAIADVVELVEKMLASGAAYVVDGEFPDIYYRADATLQFGYESGYDRETMLRLFA 189 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K + D +LW+ + P EP W SP+G GRPGWH+EC+A++ +G D Sbjct: 190 ERGGD--PQRPGKTDALDALLWRAARPGEPSWPSPFGNGRPGWHVECAAIALSRIGSGLD 247 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 I GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + +++L Sbjct: 248 IQGGGSDLIFPHHEFTAAHAECVRGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSQLR 307 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGI 346 GR IRL +L HYR ++ Q L EA L +W P + + Sbjct: 308 ------GRGVEPAAIRLGLLAGHYRGDRYWSDQVLDEATARLRRWRTATALPAGPDATDV 361 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK--NHD-LLPIFNASA--HILGIEV 396 I V L +DLNT A+ AL ++ HD P ASA +LG+ + Sbjct: 362 I-ARVRQYLADDLNTPKALAALDGWTTDALDYGGHDTAAPRLVASAVDALLGVAL 415 >gi|302550316|ref|ZP_07302658.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces viridochromogenes DSM 40736] gi|302467934|gb|EFL31027.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces viridochromogenes DSM 40736] Length = 409 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 185/343 (53%), Gaps = 27/343 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGLV---TLDPGPVARIYVCGITPYDATHLGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 ++ V YV+N+TD+DD ++ERA+++ + + + T F +D T L L P Sbjct: 72 TKRQVHYVQNVTDVDDPLLERAQRDGLDW------AALAEQETALFREDMTALRMLPPRQ 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQKM 175 A IP ++ L++ + G AYE ++ F S P++G S R + ++ Sbjct: 126 YIGAVEAIPGIVPLVERLRDLGAAYELEGDVYFSVESDPHFGKVSNLDAAAMRLLSAERG 185 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G P++ KKNP D +LW + EP W+ GRGRPGWHIEC A++ +LG FDI Sbjct: 186 GD--PDRPGKKNPLDPMLWMAAREGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDIQ 243 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHE + + A ++H G + L+G KMSKS GN + +++L Sbjct: 244 GGGSDLAFPHHEMGASHAQALTGEFPMAKAYVHAGMVALDGEKMSKSKGNLVFVSKL--- 300 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 ++ G PA IRLA+L HYR ++T Q L +A L +W Sbjct: 301 -RYDGVD-PA-AIRLALLAHHYRADWEWTDQVLQDAVDRLGRW 340 >gi|203284503|ref|YP_002222243.1| cysteinyl-tRNA synthetase [Borrelia duttonii Ly] gi|201083946|gb|ACH93537.1| cysteinyl-tRNA synthetase [Borrelia duttonii Ly] Length = 485 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 154/499 (30%), Positives = 237/499 (47%), Gaps = 68/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT + ++E + + S ++Y CGPTVY++AHIGN R I D+L + L+ + + Sbjct: 7 LKLYNTKTKCLSEVKNL--SETKIYACGPTVYNYAHIGNLRTYIFEDLLIKSLKLF--KY 62 Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V Y NITDI +DK+++ A++ ++ I T+ F D +L Sbjct: 63 NVNYAMNITDIGHLTGDFDDGEDKVVKAAKERGLTV------CEIGKFFTKAFFDDCKKL 116 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-- 172 L P A+ +I MI +++ + +G Y N + FD S NYG + +++ Sbjct: 117 NILHPDKVLVASEYILDMIEVVKVLEKNGFTYFVNGNVYFDISRFKNYGQMAGINLNDIN 176 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + +RV K+N +DF+LW ++ E W+SPWG G P WH+EC+ M+ +Y Sbjct: 177 ENSVSRVELDLSKRNKSDFVLWFTNSKFQNQEMKWDSPWGFGYPSWHLECATMNLNYFNS 236 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 +IH GG+D I HH NEIA C + +++IH FL +E KMSKSN +FITI Sbjct: 237 TLNIHLGGIDHIRVHHVNEIAIMECY-LGKNWCDMFIHGEFLIMENEKMSKSNNDFITIK 295 Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSK 344 L E + F +P+ R L HYR + FT L ++ LLSK +S Sbjct: 296 NL-EDEGF------SPLDFRYFCLTAHYRTQLKFTFHSLKACKVARENLLSKLTSCYSSL 348 Query: 345 GIIDPAVLSA--------------------LYNDLNTVSAIQALHKLARE----STKNHD 380 D ++LS + DLN + L + R+ S Sbjct: 349 SQFDISLLSQDDENIEFILEHKYYDSFLERIAFDLNIPKVLALLWDIVRDNNLSSLAKLK 408 Query: 381 LLPIFNASAHI-LGIEVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLES 437 L F+ + L E+ +E I I + L++ER + K F AD IR+ S Sbjct: 409 LAFKFDEVLSLGLREEILREIDRSRIVIDDVMNSLIEERRLAKLKKDFKRADEIREYCRS 468 Query: 438 KGFILEDYKNPDNGQRMTR 456 KGFIL D + G ++ R Sbjct: 469 KGFILID---TEEGTKVKR 484 >gi|239932256|ref|ZP_04689209.1| cysteinyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291440619|ref|ZP_06580009.1| cysteinyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291343514|gb|EFE70470.1| cysteinyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] Length = 409 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/318 (36%), Positives = 168/318 (52%), Gaps = 23/318 (7%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD HIG+A FD++ R+ + ++ V YV+N+TD+DD ++ERA ++ Sbjct: 39 RIYVCGITPYDATHIGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPLLERAERD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 97 ------GLDWAALAEQETALFREDMTALRMLPPRHYTGAVEAIPGIVPLVERLRDLGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E +I F S P++G S R + ++ G P++ KKNP D +LW + Sbjct: 151 ELEGDIYFSVESDPHFGQVSHLDAAAMRLLSAERGGD--PDRPGKKNPVDPMLWMAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ GRGRPGWHIEC A++ +LG FD+ GGG DLIFPHHE + + Sbjct: 209 EPSWDGGSLGRGRPGWHIECVAIALEHLGMGFDVQGGGSDLIFPHHEMGASHAQVLTGEF 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L G KMSKS GN + ++ L PA IRLA+L HYR Sbjct: 269 PMAKAYVHAGMVALHGEKMSKSKGNLVFVSRLRRDGVD-----PA-AIRLALLAHHYRAD 322 Query: 320 IDFTVQRLTEAEILLSKW 337 ++T Q L +A L W Sbjct: 323 WEWTDQVLQDAVTRLGHW 340 >gi|118472573|ref|YP_888468.1| cysteinyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] gi|308197104|sp|A0QZY0|MSHC_MYCS2 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|118173860|gb|ABK74756.1| cysteinyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] Length = 412 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 194/383 (50%), Gaps = 41/383 (10%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++ +R++ + + P MYVCG T YD H+G+A + FD+++RL + Sbjct: 19 LRLFDSADRQV---RPVTPGPTATMYVCGITPYDATHLGHAATYLTFDLVHRL--WLDAG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAIS--IITSKNTQQFVKDTTRLACLAPTH 121 V YV+N+TD+DD + ERA + D I + + TQ F +D L L P Sbjct: 74 HTVQYVQNVTDVDDPLFERAER--------DGIDWRTLGDRETQLFREDMAALRVLPPHD 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT+ I +++ +++ ++ G AY + ++ F + +G S D M T Sbjct: 126 YVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYES--GYDRDTMLT 183 Query: 178 RV------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 P++ K + D +LW+ P EP W SP+GRGRPGWH+ECSA++ +G Sbjct: 184 LFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGL 243 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DLIFPHHE A + + A ++H G + +G KMSKS GN + +++L Sbjct: 244 DIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQL 303 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKG 345 + IRL + HYRE ++ + L EA L++W P+ + Sbjct: 304 R------AQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATD 357 Query: 346 IIDPAVLSALYNDLNTVSAIQAL 368 +I V L +DL+T A+ AL Sbjct: 358 VI-ARVRQYLADDLDTPKALAAL 379 >gi|326332343|ref|ZP_08198622.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Nocardioidaceae bacterium Broad-1] gi|325949832|gb|EGD41893.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Nocardioidaceae bacterium Broad-1] Length = 410 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 186/351 (52%), Gaps = 27/351 (7%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCG T YD H+G+A + FD+L+R + V Y +N+TD+DD ++ERA + Sbjct: 40 LYVCGITPYDATHMGHANTYVAFDLLHRA--WLNAGYEVGYTQNVTDVDDPLLERADK-- 95 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + + T+ F +D L + P H A IP ++ LI + G Y+ Sbjct: 96 ----VGIEWEALAERETELFRQDMEALRVVPPQHYIGAVESIPLVLSLIGELEEAGAIYK 151 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRV--PEKYHKKNPADFILWKRSTPMEPG 203 + ++ + +G SR +E + G R PE+ KK+P D +LW+ P EP Sbjct: 152 VDEDVYASVAVDDAFGEESRMSREEMLELFGERGGDPERPGKKDPLDPLLWRAERPGEPA 211 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W SP+G GRPGWHIEC+A++ +LG F + GG DL+FPHHE + + A + + A Sbjct: 212 WPSPYGPGRPGWHIECTAIALEHLGAGFTVQAGGSDLVFPHHEMSGSHARSAGK--EFAE 269 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 I+ H G + +G KMSKS GN + ++ L ++ IRL +L HYR+ ++T Sbjct: 270 IYTHGGMVAYDGHKMSKSRGNLVFVSALRNSEI------DPMAIRLVLLGHHYRDDWEWT 323 Query: 324 VQRLTEAEILLSKWPQTSTSKGIIDPA------VLSALYNDLNTVSAIQAL 368 +L +A +++W + + + G PA VL AL +DL+ A+QA+ Sbjct: 324 DAKLFDAVDQIAEW-RKAVALGRGAPAAPVVETVLGALADDLDAPRAVQAV 373 >gi|219109269|pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway gi|219109270|pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 194/383 (50%), Gaps = 41/383 (10%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++ +R++ + + P MYVCG T YD H+G+A + FD+++RL + Sbjct: 21 LRLFDSADRQV---RPVTPGPTATMYVCGITPYDATHLGHAATYLTFDLVHRL--WLDAG 75 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAIS--IITSKNTQQFVKDTTRLACLAPTH 121 V YV+N+TD+DD + ERA + D I + + TQ F +D L L P Sbjct: 76 HTVQYVQNVTDVDDPLFERAER--------DGIDWRTLGDRETQLFREDMAALRVLPPHD 127 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGT 177 AT+ I +++ +++ ++ G AY + ++ F + +G S D M T Sbjct: 128 YVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYES--GYDRDTMLT 185 Query: 178 RV------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 P++ K + D +LW+ P EP W SP+GRGRPGWH+ECSA++ +G Sbjct: 186 LFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGL 245 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DLIFPHHE A + + A ++H G + +G KMSKS GN + +++L Sbjct: 246 DIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQL 305 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKG 345 + IRL + HYRE ++ + L EA L++W P+ + Sbjct: 306 R------AQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATD 359 Query: 346 IIDPAVLSALYNDLNTVSAIQAL 368 +I V L +DL+T A+ AL Sbjct: 360 VI-ARVRQYLADDLDTPKALAAL 381 >gi|328869460|gb|EGG17838.1| cysteinyl-tRNA synthetase [Dictyostelium fasciculatum] Length = 640 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 192/399 (48%), Gaps = 69/399 (17%) Query: 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 NI Y CGPTVYD +H+G+AR + D++ R++ Y+ V +V +TDIDDKII++++ Sbjct: 120 NISWYSCGPTVYDSSHLGHARTYVTIDIIQRIINDYFNYN-VIHVMGMTDIDDKIIKKSK 178 Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGH 144 + S + Q+FV D L P R T HI +I I I +G Sbjct: 179 ETGVSF------QELARVKEQEFVDDMASLHVRPPLLITRVTEHIDNIIDFIGKIKENGF 232 Query: 145 AYEAN----NEIIFDTSSIPN-YGSF--SRRKIDEQKMGTRVPEKYHKKNPADFILWKRS 197 AY+ N I+FDT + + YG F + I + + V K ++ DF LWK + Sbjct: 233 AYDVQSDNTNSILFDTKQMGDRYGKFVYNDNIISDDTLKINVDAK---RDARDFALWKGT 289 Query: 198 TPME---------PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 + WESP+G+GRPGWHIECS+M G DIH GG+DL FPHHENE Sbjct: 290 YGNDYDKDGKGTIVSWESPFGKGRPGWHIECSSMIESVFGNKLDIHAGGIDLKFPHHENE 349 Query: 249 IAQSCCAD----------RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 IAQ C A+ ++ N +IH G LN++G KMSKS NFITI E L+T Sbjct: 350 IAQ-CEANFSPTPNTETGEYDQWINYFIHIGHLNIQGLKMSKSLKNFITIREYLKTN--- 405 Query: 299 GRSWPAPVIRLAMLMTHYREPIDF-------------------TVQRLTEAEILLSKWPQ 339 A +R LM Y + ID+ QRL E + + + Sbjct: 406 ----TADSLRWICLMNRYYDKIDYNPNNDYSSLPNKFYGWFGLVEQRLKEPLDMNLERSK 461 Query: 340 TSTSKGIIDP------AVLSALYNDLNTVSAIQALHKLA 372 + +K ID V AL D NT AI+++ L Sbjct: 462 FTDAKQYIDAFNTTKNEVHQALSQDFNTAKAIRSMGNLV 500 >gi|108800119|ref|YP_640316.1| cysteinyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119869247|ref|YP_939199.1| cysteinyl-tRNA synthetase [Mycobacterium sp. KMS] gi|126435744|ref|YP_001071435.1| cysteinyl-tRNA synthetase [Mycobacterium sp. JLS] gi|123070011|sp|Q1B774|MSHC_MYCSS RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947199|sp|A3Q1B7|MSHC_MYCSJ RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947200|sp|A1UHV1|MSHC_MYCSK RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|108770538|gb|ABG09260.1| cysteinyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119695336|gb|ABL92409.1| cysteinyl-tRNA synthetase [Mycobacterium sp. KMS] gi|126235544|gb|ABN98944.1| cysteinyl-tRNA synthetase [Mycobacterium sp. JLS] Length = 415 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 199/387 (51%), Gaps = 33/387 (8%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y++ +R++ A D + MYVCG T YD H+G+A + FD+++RL + Sbjct: 18 QLRLYDSADRQVRPVSAGDTAT--MYVCGITPYDATHLGHAATYLAFDLVHRL--WLDAG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+NITD+DD + ERA ++ I D + ++ Q F +D L L P Sbjct: 74 HRVHYVQNITDVDDPLFERAARD--GIDWRD----LGAREIQLFREDMAALRVLPPHDYV 127 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 AT+ I ++I L++ ++ G AY ++ ++ + + +G S D + M T Sbjct: 128 AATDAIAEVIELVEKMLASGAAYVVDDPEFPDVYYRADATVQFGYES--NYDHETMLTLF 185 Query: 180 ------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 P++ K + D +LW+ P EP W SP+G GRPGWH+EC+A++ +G DI Sbjct: 186 AERGGDPDRAGKADELDALLWRAERPGEPSWPSPFGPGRPGWHVECAAIALSRIGTGLDI 245 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLIFPHHE A + + A ++H G + +G KMSKS GN + ++ L Sbjct: 246 QGGGSDLIFPHHEFSAAHAESVTGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSRLRA 305 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVL 352 IRL +L HYRE ++ L++A+ L +W + TS G VL Sbjct: 306 EGV------DPSAIRLGLLAGHYREDRFWSDDVLSDAQTRLQRWRRATSLPTGPDATDVL 359 Query: 353 SA----LYNDLNTVSAIQALHKLARES 375 + L +DL+T A+ AL E+ Sbjct: 360 ARVRTYLADDLDTPKALIALDAWCTEA 386 >gi|281346768|gb|EFB22352.1| hypothetical protein PANDA_014037 [Ailuropoda melanoleuca] Length = 468 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 162/289 (56%), Gaps = 24/289 (8%) Query: 48 IVFDVLYRLLRYYYGEKC-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQ 106 + FD++ R+L +G C + V ITD+DDKII RA + +N + + + + + Sbjct: 3 VRFDIIRRILTRVFG--CNIIMVMGITDVDDKIIRRAAE------MNVSPASLANLYEED 54 Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGS 164 F +D L L PT R T +IPQ+I I+ II +GHAY A + FD SI + YG Sbjct: 55 FKQDMAALKVLPPTVYLRVTENIPQIISFIEGIIANGHAYSTAQGNVYFDLRSIGDKYGK 114 Query: 165 FSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSS 224 + P K++ +DF LWK + P E W SPWG+GRPGWHIECS +SS Sbjct: 115 L----VGAVPSPVGEPVDSDKRHASDFALWKAAKPQEVFWASPWGKGRPGWHIECSTISS 170 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSN 282 G+ DIH GG DL FPHHENEIAQ + + N ++H+G L+++G+ KMSKS Sbjct: 171 LVFGRQLDIHSGGADLAFPHHENEIAQCEAFHQCRQWGNYFLHSGHLHVKGKEEKMSKSL 230 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 N+ITI + L+T +P V RL + + YR ID++ + EA+ Sbjct: 231 KNYITIKDFLKT-------FPPDVFRLFCMRSAYRSAIDYSDGTMLEAK 272 >gi|301060756|ref|ZP_07201571.1| cysteine--tRNA ligase [delta proteobacterium NaphS2] gi|300445153|gb|EFK09103.1| cysteine--tRNA ligase [delta proteobacterium NaphS2] Length = 770 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 145/471 (30%), Positives = 237/471 (50%), Gaps = 54/471 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +++YNT+ R+ +F I + + +Y CGPT+ + R ++ D++ R + Y Sbjct: 303 KSGLRVYNTMTRRKEDFVPIKENQVTLYSCGPTLCQVVDLVQCRRLVFSDLITRYMVYRG 362 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V ++ N+TD+DD+ IE A++ S+ T F+KD L + T Sbjct: 363 YD--VNHIMNVTDLDDRTIEGAQRAGVSL------KEFTDMFYNSFMKDLDSLNIIRATQ 414 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR + H+ MI L Q ++ G+AYE I FD S +YG S+ +++ ++G V Sbjct: 415 YPRPSEHVDDMIELAQTLLEKGYAYEKLRSIYFDISRFKDYGKLSKIDLNKIRIGKTVDL 474 Query: 181 EKYHKKNPADFILWKRST--PMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 ++Y K+NP DF L KRST ++ G +++ WG RPGWH+EC+A++ LG DIH Sbjct: 475 DQYEKENPKDFTLLKRSTLNELKSGLFFKTKWGNIRPGWHLECAAIALKTLGPTHDIHTS 534 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G+ L+FPHHEN IA S A AN W+HN + G + S+ +T+ +LL T+ Sbjct: 535 GVSLVFPHHENAIAISKAATG-RPLANYWLHNEPVMFNGP--NPSDDVKLTLRDLL-TEG 590 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---ILLSKWPQ-----TSTSKG--- 345 F GR IR +L HYR+PI F+ +L L K+ Q STS+ Sbjct: 591 FKGRE-----IRYWLLSRHYRKPIFFSHTKLAAVRNTIAHLDKFVQKIYFAKSTSEDPDL 645 Query: 346 -----IIDPAVLSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFNASA 389 + ++A+ +D N +A+ AL + R ++ L Sbjct: 646 DQTIYALKQGFVTAMDDDFNVAAALAALFQFTRNINLRMDQRGLSTSDREKTLAALTRIN 705 Query: 390 HILGIEVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKG 439 +LGI +L+ S A + KL+++R + K + +AD++RK++E+ G Sbjct: 706 SVLGI----MNLDPPDSDAEVAKLIEKRELARSQKDWGTADHLRKEMEAMG 752 >gi|254775033|ref|ZP_05216549.1| cysteinyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC 25291] Length = 384 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 195/391 (49%), Gaps = 41/391 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD++YR ++ V YV+N+TD+DD ++ERA + Sbjct: 13 MYVCGITPYDATHLGHAATYLAFDLIYR--QWLDLGHDVHYVQNVTDVDDPLLERAAR-- 68 Query: 88 PSIPINDAIS--IITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 D I + + F +D L LAP AT I ++ L++ ++ G A Sbjct: 69 ------DGIDWRALAEREVSLFREDMAALRILAPRDYVGATEAIADVVELVEKMLASGAA 122 Query: 146 YEANNE---IIFDTSSIPNYG---SFSRR---KIDEQKMGTRVPEKYHKKNPADFILWKR 196 Y + E I + + +G + R ++ ++ G P++ K + D +LW+ Sbjct: 123 YVVDGEFPDIYYRADATLQFGYESGYDRETMLRLFAERGGD--PQRPGKTDALDALLWRA 180 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 + P EP W SP+G GRPGWH+EC+A++ +G DI GGG DLIFPHHE A + C Sbjct: 181 ARPGEPSWPSPFGNGRPGWHVECAAIALSRIGSGLDIQGGGSDLIFPHHEFTAAHAECVR 240 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 + A ++H G + +G KMSKS GN + +++L GR IRL +L HY Sbjct: 241 GERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSQLR------GRGVEPAAIRLGLLAGHY 294 Query: 317 REPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHK 370 R ++ Q L EA L +W P + +I V L +DLNT A+ AL Sbjct: 295 RGDRYWSDQVLDEATARLRRWRTATALPAGPDATDVI-ARVRQYLADDLNTPKALAALDG 353 Query: 371 LARESTK--NHD-LLPIFNASA--HILGIEV 396 ++ HD P ASA +LG+ + Sbjct: 354 WTTDALDYGGHDTAAPRLVASAVDALLGVAL 384 >gi|15609267|ref|NP_216646.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv] gi|31793310|ref|NP_855803.1| cysteinyl-tRNA synthetase [Mycobacterium bovis AF2122/97] gi|121638012|ref|YP_978236.1| cysteinyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661945|ref|YP_001283468.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148823340|ref|YP_001288094.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis F11] gi|167967870|ref|ZP_02550147.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|215403514|ref|ZP_03415695.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|215411843|ref|ZP_03420627.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A] gi|215427508|ref|ZP_03425427.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T92] gi|215431057|ref|ZP_03428976.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis EAS054] gi|215446356|ref|ZP_03433108.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T85] gi|218753852|ref|ZP_03532648.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503] gi|219558106|ref|ZP_03537182.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T17] gi|224990506|ref|YP_002645193.1| cysteinyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798807|ref|YP_003031808.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis KZN 1435] gi|254232288|ref|ZP_04925615.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis C] gi|254364936|ref|ZP_04980982.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis str. Haarlem] gi|254551164|ref|ZP_05141611.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187126|ref|ZP_05764600.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] gi|260201240|ref|ZP_05768731.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis T46] gi|260205422|ref|ZP_05772913.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis K85] gi|289443634|ref|ZP_06433378.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Mycobacterium tuberculosis T46] gi|289447756|ref|ZP_06437500.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis CPHL_A] gi|289554084|ref|ZP_06443294.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis KZN 605] gi|289570243|ref|ZP_06450470.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis T17] gi|289574811|ref|ZP_06455038.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis K85] gi|289745403|ref|ZP_06504781.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis 02_1987] gi|289750724|ref|ZP_06510102.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis T92] gi|289754239|ref|ZP_06513617.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis EAS054] gi|289758250|ref|ZP_06517628.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis T85] gi|289762291|ref|ZP_06521669.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis GM 1503] gi|294993134|ref|ZP_06798825.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 210] gi|297634716|ref|ZP_06952496.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207] gi|297731705|ref|ZP_06960823.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506] gi|298525625|ref|ZP_07013034.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A] gi|306776378|ref|ZP_07414715.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu001] gi|306780156|ref|ZP_07418493.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu002] gi|306784900|ref|ZP_07423222.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu003] gi|306789267|ref|ZP_07427589.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu004] gi|306793596|ref|ZP_07431898.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu005] gi|306797986|ref|ZP_07436288.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu006] gi|306803865|ref|ZP_07440533.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu008] gi|306808437|ref|ZP_07445105.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu007] gi|306968261|ref|ZP_07480922.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu009] gi|306972490|ref|ZP_07485151.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu010] gi|307080200|ref|ZP_07489370.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu011] gi|307084779|ref|ZP_07493892.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu012] gi|313659040|ref|ZP_07815920.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475] gi|54039653|sp|P67018|MSHC_MYCBO RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|54042274|sp|P67017|MSHC_MYCTU RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947194|sp|A1KKH3|MSHC_MYCBP RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947195|sp|C1AQ46|MSHC_MYCBT RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947201|sp|A5U4F6|MSHC_MYCTA RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947202|sp|A5WPA3|MSHC_MYCTF RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|310947203|sp|C6DPT0|MSHC_MYCTK RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|3261823|emb|CAB10724.1| Probable cysteinyl-tRNA synthetase CysS2 [Mycobacterium tuberculosis H37Rv] gi|31618902|emb|CAD97007.1| Probable cysteinyl-tRNA synthetase CysS2 [Mycobacterium bovis AF2122/97] gi|121493660|emb|CAL72135.1| Probable cysteinyl-tRNA synthetase CysS2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601347|gb|EAY60357.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis C] gi|134150450|gb|EBA42495.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis str. Haarlem] gi|148506097|gb|ABQ73906.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148721867|gb|ABR06492.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis F11] gi|224773619|dbj|BAH26425.1| cysteinyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320310|gb|ACT24913.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis KZN 1435] gi|289416553|gb|EFD13793.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Mycobacterium tuberculosis T46] gi|289420714|gb|EFD17915.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis CPHL_A] gi|289438716|gb|EFD21209.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis KZN 605] gi|289539242|gb|EFD43820.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis K85] gi|289543997|gb|EFD47645.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis T17] gi|289685931|gb|EFD53419.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis 02_1987] gi|289691311|gb|EFD58740.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis T92] gi|289694826|gb|EFD62255.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis EAS054] gi|289709797|gb|EFD73813.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis GM 1503] gi|289713814|gb|EFD77826.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis T85] gi|298495419|gb|EFI30713.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A] gi|308215167|gb|EFO74566.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu001] gi|308326927|gb|EFP15778.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu002] gi|308330361|gb|EFP19212.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu003] gi|308334196|gb|EFP23047.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu004] gi|308337992|gb|EFP26843.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu005] gi|308341678|gb|EFP30529.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu006] gi|308345168|gb|EFP34019.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu007] gi|308349474|gb|EFP38325.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu008] gi|308354105|gb|EFP42956.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu009] gi|308358045|gb|EFP46896.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu010] gi|308361985|gb|EFP50836.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu011] gi|308365646|gb|EFP54497.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis SUMu012] gi|323719283|gb|EGB28425.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis CDC1551A] gi|326903745|gb|EGE50678.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis W-148] gi|328458569|gb|AEB03992.1| cysteinyl-tRNA synthetase 2 cysS2 [Mycobacterium tuberculosis KZN 4207] Length = 414 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 46/418 (11%) Query: 4 KIKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y++ +R++ + + P S MYVCG T YD H+G+A + FD+++RL Sbjct: 18 QLRLYDSADRQV---RPVAPGSKATMYVCGITPYDATHLGHAATYVTFDLIHRLWLDLGH 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E + YV+NITDIDD + ERA ++ + D + F +D L L P Sbjct: 75 E--LHYVQNITDIDDPLFERADRD--GVDWRD----LAQAEVALFCEDMAALRVLPPQDY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE------IIFDTSSIPNYGSFSRRKID----- 171 AT I +M+ LI+ ++ G AY + E I F + +G S D Sbjct: 127 VGATEAIAEMVELIEKMLACGAAYVIDREMGEYQDIYFRADATLQFGYESGYDRDTMLRL 186 Query: 172 -EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 E++ G P + K + D +LW+ + P EP W SP+G GRPGWH+EC+A++ +G Sbjct: 187 CEERGGD--PRRPGKSDELDALLWRAARPGEPSWPSPFGPGRPGWHVECAAIALSRIGSG 244 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 DI GGG DLIFPHHE A + C + A ++H G + +G KMSKS GN + ++ Sbjct: 245 LDIQGGGSDLIFPHHEFTAAHAECVSGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSA 304 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 L +RL +L HYR ++ Q L EA L +W +T+T+ PA Sbjct: 305 LRAQDV------EPSAVRLGLLAGHYRADRFWSQQVLDEATARLHRW-RTATAL-PAGPA 356 Query: 351 VLSA-------LYNDLNTVSAIQALHKLARESTK--NHDL-LPIFNASA--HILGIEV 396 + L +DL+T AI AL ++ + HD P A+A +LG+++ Sbjct: 357 AVDVVARVRRYLADDLDTPKAIAALDGWVTDAVEYGGHDAGAPKLVATAIDALLGVDL 414 >gi|240047303|ref|YP_002960691.1| Cysteinyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581] gi|239984875|emb|CAT04868.1| Cysteinyl-tRNA synthetase [Mycoplasma conjunctivae] Length = 401 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/321 (38%), Positives = 173/321 (53%), Gaps = 23/321 (7%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 I+ + ++YVCGPTVYDF HIGN RP+I FD L +LRY+ K V ++ NITDIDDKII Sbjct: 3 INKDSFKIYVCGPTVYDFIHIGNLRPIISFDFLISILRYF--NKKVDFLHNITDIDDKII 60 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 RA E N + S I + +++ P + T+H+ ++I I N+ Sbjct: 61 NRALAE------NKSESEIANFYYLHYLEMLKIYNVFPPNMIIKVTDHLDKIINYISNLE 114 Query: 141 LHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 G Y + ++IF+T I NYG K+ Q + K +K N DF+LWK+ T Sbjct: 115 QAGFTYYNQDGDLIFNTKKIENYG-----KVSGQILSKLYKNKDNKANNNDFVLWKK-TK 168 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 + S +G GRPGWH ECSAM Y DIHGGG DLIFPHHENE AQ ++ + Sbjct: 169 KGVVYNSSFGLGRPGWHTECSAMIFDYFNTQIDIHGGGNDLIFPHHENENAQHFALNKED 228 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 T + W+ G +N+ G+KMSKS GN I K F + P V R +L + P Sbjct: 229 ITKD-WLRVGVININGQKMSKSLGNVIL------AKDFYQKYHP-DVFRNILLTSSLSSP 280 Query: 320 IDFTVQRLTEAEILLSKWPQT 340 I+ T + LT L+ + ++ Sbjct: 281 INITSELLTNHSNLILSYKKS 301 >gi|255027861|ref|ZP_05299847.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-003] Length = 300 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 106/268 (39%), Positives = 147/268 (54%), Gaps = 32/268 (11%) Query: 132 MIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADF 191 MI +I +I G+AYE+ ++ F T +YG S +++ E + G RV K++ DF Sbjct: 1 MIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYNERKQDELDF 60 Query: 192 ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+FPHHE+EIAQ Sbjct: 61 TLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPHHEDEIAQ 120 Query: 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 S A + AN W+HN FLN++G KMSKS GNFIT++++L+ VIR M Sbjct: 121 SEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDN-------DPNVIRFFM 172 Query: 312 LMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGI--------------I 347 L HYR+PI L +A+ L + QT + + + Sbjct: 173 LSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDEWLEQLTEL 232 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARES 375 A + +D NT +AI H+LA+ + Sbjct: 233 KQAFEDDMDDDFNTANAITTFHELAKRA 260 >gi|225021443|ref|ZP_03710635.1| hypothetical protein CORMATOL_01463 [Corynebacterium matruchotii ATCC 33806] gi|224945825|gb|EEG27034.1| hypothetical protein CORMATOL_01463 [Corynebacterium matruchotii ATCC 33806] Length = 419 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 208/387 (53%), Gaps = 39/387 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T + + + + + MYVCG T YD H+G+A + FD+++RLL Sbjct: 19 LRLYDTADETLKPVR-VTHNQAGMYVCGITPYDSTHLGHAATYLAFDLIHRLL--IDAGV 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+NITD+DD + ERA + D + + S F D L+ + P Sbjct: 76 QVTYVQNITDVDDPLFERATR--------DGVDWRELGSSQIDLFRSDMADLSVIPPQDY 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKIDE--- 172 A + ++I ++Q ++ G AY ++ +I ++ +G ++ R+++ E Sbjct: 128 VGAMESVGEVITMVQQLLDAGAAYVVDDPDYPDIYASITATDRFGYESNYPRQRMLELFA 187 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K++P D +LW+ + EP W++P+G GRPGWH+ECSA++++ LG F Sbjct: 188 ERGGD--PDRPGKRDPLDALLWRVAREGEPAWDAPFGAGRPGWHVECSAIATNRLGSSFA 245 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 I GGG DLIFPHHE A + A + A ++H G ++L+G KMSKS GN + +++L Sbjct: 246 IQGGGSDLIFPHHEFSAAHAEAALASPRMAEHYVHTGMISLDGVKMSKSLGNLVFVSKLT 305 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------SKG 345 E IRL + + HYR D++ + L AE L W +T ++ Sbjct: 306 EAGH------DPSAIRLGVYLGHYRSDRDWSDKVLWAAEHRLVYWRMATTLASDESAARA 359 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLA 372 ++ + S L +DLNT +AI+A+ + A Sbjct: 360 LVQ-QIRSLLADDLNTPAAIKAIDEWA 385 >gi|282864361|ref|ZP_06273417.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. ACTE] gi|282560848|gb|EFB66394.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces sp. ACTE] Length = 409 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/391 (31%), Positives = 203/391 (51%), Gaps = 36/391 (9%) Query: 3 KKIKIYNTLER-KITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++I++T +IT +DP + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGRIT----LDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WL 70 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 ++ V YV+N+TD+DD ++ERA ++ + + + + T F +D T L L P Sbjct: 71 DTKRQVHYVQNVTDVDDPLLERAVRD------GEDWAELAERETALFREDMTALRMLPPK 124 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQK 174 H A IP ++ L++ ++ G AYE + ++ F S P++G S R + ++ Sbjct: 125 HYIGAVEAIPGIVPLVERLLDAGAAYELDGDVYFSVGSDPHFGGVSHLDAEAMRLLSAER 184 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG-WHIECSAMSSHYLGKVFDI 233 G PE+ KKNP D +LW + EP W+ WHIEC A++ +LG FD+ Sbjct: 185 GGD--PERPGKKNPLDPMLWMAARDGEPSWDGGRLGRGRPGWHIECVAIALDHLGMGFDV 242 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL+FPHHE + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 243 QGGGSDLVFPHHEMGASHAQALTGEYPFAQAYVHAGMVGLDGEKMSKSKGNLVFVSALRR 302 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSKGII 347 PA IRL++L HYR ++T Q L +A L++W P + ++ Sbjct: 303 DGVD-----PA-AIRLSLLAHHYRSDWEWTDQVLADAVERLARWRAAVSRPDGLPADALV 356 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKN 378 D V AL +DL++ +A+ A+ + A T Sbjct: 357 D-EVREALADDLDSPAALAAVDRWAERQTSG 386 >gi|83768602|dbj|BAE58739.1| unnamed protein product [Aspergillus oryzae] Length = 531 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 21/281 (7%) Query: 15 ITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNI 72 +T F A+DP + Y CGPTVYD AH+G+AR D++ R+L+ Y+ + V +V NI Sbjct: 44 LTPFIALDPKGRKVTWYACGPTVYDDAHLGHARNYASTDIIRRILKDYF-KFDVEFVMNI 102 Query: 73 TDIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHI 129 TD+DDK+ ++P DA I +T K + F++D L L P R T + Sbjct: 103 TDVDDKL------RGSTVP-GDAYEIFTKLTKKYEEHFMRDMRDLNVLDPDEITRVTEYG 155 Query: 130 PQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 ++ ++ I+ + Y + + FD S G R + GT + K++P Sbjct: 156 QEIADFVEKIVTNDFGYVTLDGSVYFDIKSFEKAGHPYARDGE----GT-LSHAVEKRSP 210 Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 DF +WK S P EP W+S WG+GRPGWHIECSAM+S LG DIH GG+DL FPHH+NE Sbjct: 211 DDFAIWKASRPGEPSWKSQWGQGRPGWHIECSAMASSRLGSQNDIHSGGIDLAFPHHDNE 270 Query: 249 IAQSCC--ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 +AQS +++ ++ N ++H G L+++G KMSKS NF T Sbjct: 271 LAQSEAYWSEKKQQWVNYFLHMGHLSIQGSKMSKSLKNFAT 311 >gi|198426695|ref|XP_002130035.1| PREDICTED: similar to cysteinyl-tRNA synthetase 2 (mitochondrial)(putative) [Ciona intestinalis] Length = 523 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 149/493 (30%), Positives = 218/493 (44%), Gaps = 89/493 (18%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 DP ++ Y CGPTVYD HIG+A I FD + R+L Y+G ++ V IT+IDDKII Sbjct: 50 DPKHVTWYACGPTVYDKTHIGHASSYIRFDTIRRILTNYFG-LTISMVMGITNIDDKIIT 108 Query: 82 RARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL 141 RA +N + +F D L L P R + +P+++ I ++ Sbjct: 109 RANL------LNKEFLSMAEHYENEFKTDLLNLNILPPIAYVRVSEIVPELLSFIYRLLE 162 Query: 142 HGHAY-EANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 HAY + FD G ++ E G K+ DF LWK + Sbjct: 163 QRHAYVSKQGNVWFDVDQFTKVGKLVPIHQEWKESDSGGE------KRCARDFALWKAAK 216 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 P EP WE+PWG+GRPGWH+ECS ++S Y GK DIH G DL FPHHE+EI QS Sbjct: 217 PGEPYWEAPWGKGRPGWHLECSTIASLYFGKQIDIHSGASDLEFPHHESEILQSEAFHCE 276 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 E+ AN ++H+G L KMSKS GN + ++E L+ R P V+R L T + Sbjct: 277 EQWANYFLHSGLLKFGKSKMSKSLGNVVNVDEALK------RHSP-DVLRYLCLSTAWHT 329 Query: 319 PIDFTVQRL--TEAEILLSK--------WPQTSTSKGIIDPA------------VLSALY 356 + +T + + +A I L K + Q + D A V + Sbjct: 330 NLSYTSKDIKHVKASIQLLKTFLSKCQQYVQGNIETKNFDSAAIYHSLDTCKSEVYVCMC 389 Query: 357 NDLNTVSAIQALHKLARESTK--------------NH--DLLPIFNASAHI------LGI 394 ND +T ++AL +L K NH + P ++ LG Sbjct: 390 NDFDTPGVLRALKQLCYSVEKTFGEQIVVENWEPGNHVRNTKPFVEVMTYVTETFTNLGF 449 Query: 395 E-VCKEHLNKNISIA-------IEKLVQERLIL--------------LKMKKFSSADYIR 432 + + H + N I +E+L++ R + LK F DY+R Sbjct: 450 QSISAAHTDSNPDITAKGQDDILEELLKFRAKVRKLAMSSNKTSDDGLKQLLFKECDYLR 509 Query: 433 KQLESKGFILEDY 445 +L +KG ++D+ Sbjct: 510 NELSNKGISIKDW 522 >gi|218781656|ref|YP_002432974.1| cysteine synthase [Desulfatibacillum alkenivorans AK-01] gi|218763040|gb|ACL05506.1| cysteine synthase [Desulfatibacillum alkenivorans AK-01] Length = 756 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 55/478 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K + +YNT R F I P MY CGPT + +G+ R + D+L R L Y Sbjct: 299 KSGLSLYNTAIRSKESFTPIKPGKAGMYSCGPTANEPMGLGHCRRFVFADLLSRYLTYKG 358 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V ++ NITD+DDK IE +++ + T K QF++D L Sbjct: 359 LD--VKHIINITDMDDKTIEGSQE------AGMGLEEFTQKYIDQFMEDIETLGVKPAEA 410 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PRA+ H+ M+ + + G AYE + FD S + YG S +D+ ++G V Sbjct: 411 YPRASKHVDDMVEIASKLAGTGFAYEKMRSLYFDISRLEGYGDLSGIDLDKIRLGATVEL 470 Query: 181 EKYHKKNPADFILWKRS--TPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 + Y K NP DF L+KRS ++ G ++ WG RP WHI+C+AMS YLG+ +DIH Sbjct: 471 DDYEKDNPRDFTLFKRSRLNELKRGIFVKTEWGNVRPSWHIQCTAMSMKYLGETYDIHTA 530 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 DL+FPHHENE+A + A + AN W+H + ++ + IT+ + L+ K Sbjct: 531 SRDLVFPHHENEVAIA-KALTGKPLANYWLHCDQVIVDEKDAWPEK---ITLQD-LKDKG 585 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------TSTSKGI 346 + GR IR +L THYR+P+ T+ L A L + T+ + Sbjct: 586 YTGRQ-----IRFWLLATHYRKPLHLTLASLDSAAKGLERLDHFVEALQNADGARTNADV 640 Query: 347 ------IDPAVLSALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASA 389 I ++A+ +DL+ +A+ +L + ++ S+ + +L + Sbjct: 641 DQLLYDIKQGFIAAMDDDLSVSAALSSLFAVVKKVNRLASQNALGSSGANKILEALRKTD 700 Query: 390 HILGI-EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LG+ E + IS +EK + R +++AD IR QL ++G + D K Sbjct: 701 QVLGVLSFDAEPQDAEISALMEKREKAR----AEGDYAAADAIRDQLTARGVTVRDGK 754 >gi|305681204|ref|ZP_07404011.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium matruchotii ATCC 14266] gi|305659409|gb|EFM48909.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium matruchotii ATCC 14266] Length = 419 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 208/387 (53%), Gaps = 39/387 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T + + + + + MYVCG T YD H+G+A + FD+++RLL Sbjct: 19 LRLYDTADETLKPVR-VTHNQAGMYVCGITPYDSTHLGHAATYLAFDLIHRLL--IDAGV 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+NITD+DD + ERA + D + + S F D L+ + P Sbjct: 76 QVTYVQNITDVDDPLFERATR--------DGVDWRELGSSQIDLFRSDMADLSVIPPHDY 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKIDE--- 172 A + ++I ++Q ++ G AY ++ +I ++ +G ++ R+++ E Sbjct: 128 VGAMESVGEVITMVQQLLDAGAAYVVDDPDYPDIYASITATDRFGYESNYPRQRMLELFA 187 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K++P D +LW+ + EP W++P+G GRPGWH+ECSA++++ LG F Sbjct: 188 ERGGD--PDRPGKRDPLDALLWRAAREGEPAWDAPFGAGRPGWHVECSAIATNRLGSSFA 245 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 I GGG DLIFPHHE A + A + A ++H G ++L+G KMSKS GN + +++L Sbjct: 246 IQGGGSDLIFPHHEFSAAHAEAALASPRMAEHYVHTGMISLDGVKMSKSLGNLVFVSKLT 305 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------SKG 345 E IRL + + HYR D++ + L AE L W +T ++ Sbjct: 306 EAGH------DPSAIRLGVYLGHYRSDRDWSDKVLWAAEHRLVYWRMATTLASDESAARA 359 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLA 372 ++ + S L +DLNT +AI+A+ + A Sbjct: 360 LVQ-QIRSLLADDLNTPAAIKAIDEWA 385 >gi|167465001|ref|ZP_02330090.1| cysteinyl-tRNA synthetase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 317 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/331 (37%), Positives = 169/331 (51%), Gaps = 47/331 (14%) Query: 161 NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECS 220 +YG S + +DE + G R+ K+NP DF+LWK + P E W SPWG GRPGWHIECS Sbjct: 3 DYGKLSHQNLDELQYGIRIEVDERKENPQDFVLWKAAKPGEVYWSSPWGNGRPGWHIECS 62 Query: 221 AMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 A+ YLG+ DIHGGG+DL FPHHE EIAQ+ A + A W+HN FLN++ KMSK Sbjct: 63 ALVHKYLGETIDIHGGGVDLTFPHHECEIAQT-EALTCKPMAKYWLHNAFLNIDNEKMSK 121 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 S GN + + E+L+ K V+RL M+M HYR I+F L +A L + + Sbjct: 122 SLGNGVLVREILKRVK-------PQVLRLFMMMAHYRNQINFNSDGLEQAANGLERIMNS 174 Query: 341 STS---------KGIIDPAVL-----------SALYNDLNTVSAIQALHKLARESTKN-- 378 T+ +G D V + + +D NT AI A+ +L E+ Sbjct: 175 VTNLKHRLKIAQEGPADEQVKNRIQAIKAQFEAKMNDDFNTPDAITAVFELVSEANNTLK 234 Query: 379 ---------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 LL F + +LGI +E + IEKL+ ER + K ++ AD Sbjct: 235 EERVNVSTLEMLLDQFKSFDTVLGILEPEE--TDLMDEEIEKLIAERTEARRAKNWARAD 292 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR L KG +LED + RW+QK Sbjct: 293 EIRDILTEKGILLEDTP------QGIRWRQK 317 >gi|317124881|ref|YP_004098993.1| cysteinyl-tRNA synthetase [Intrasporangium calvum DSM 43043] gi|315588969|gb|ADU48266.1| cysteinyl-tRNA synthetase [Intrasporangium calvum DSM 43043] Length = 418 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/404 (33%), Positives = 204/404 (50%), Gaps = 46/404 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++ +T+ ++ A+D S +YVCG T YD H+G+A + FD+L R LR Sbjct: 18 EVRVRDTVSGELVP-AAVDGS-ASVYVCGITPYDATHLGHAATYLTFDLLVRSLRD--AG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+NITDIDD ++ERA E + D + ++ F +D T LA L P Sbjct: 74 VSVRYVQNITDIDDPLLERA--ERDGVSWED----LATREIGLFREDMTALAVLPPDEYL 127 Query: 124 RATNHIPQMIYLIQNIILHGHAY---------EANNEIIFDTSSIPNYGSFSRRKIDEQK 174 A IP I I+ ++ G AY +++ FD S P +GS SR +DE Sbjct: 128 GAVESIPTFIAPIEQLLATGDAYLVPAPDASRPGAHDVYFDISRDPKFGSVSR--LDEAG 185 Query: 175 M------GTRVPEKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYL 227 M P++ K+N D +LW+ EP W+ G GRPGWHIEC+ ++ +L Sbjct: 186 MLEVFAERGGDPDREGKRNRLDALLWRAHRAGEPEWDGGQLGPGRPGWHIECACIACTHL 245 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G D+ GGG DL+FPHHE A + A ++H G + L+G KMSKS GN + Sbjct: 246 GLPIDVQGGGTDLVFPHHEMSAAHARAFSGRPAFARTYVHQGMVGLDGEKMSKSKGNLVF 305 Query: 288 INELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 ++EL R+ P+ IRLA+L H+ + LT AE L+ W + + G Sbjct: 306 VSELR-------RAGVDPMAIRLALLARHHAADWIWQDHDLTAAEERLATWRRALSGNG- 357 Query: 347 IDPA-------VLSALYNDLNTVSAIQALHKLARES-TKNHDLL 382 PA V +AL +DL++ A+ ++ + A E+ T+ D L Sbjct: 358 -GPAADGTVEEVRAALADDLDSPRALASVDRWAAEALTRGGDDL 400 >gi|42561475|ref|NP_975926.1| cysteinyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|61216209|sp|Q6MS23|SYC_MYCMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|42492974|emb|CAE77568.1| cysteine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321346|gb|ADK69989.1| cysteine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 441 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 47/443 (10%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y CGPTVY++ HIGNARP+++ DVL R L+ + V Y++NITDIDDKII +A + Sbjct: 19 INLYCCGPTVYNYIHIGNARPILLVDVLIRYLKSRSIK--VNYLQNITDIDDKIILKALE 76 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + +N+ ++ K T +++D L P + + +MI I+N++ A Sbjct: 77 NN----LNEL--EVSQKYTSAYLEDLKSLNINQPDKIILISQKMNEMIDFIKNLVDINAA 130 Query: 146 YEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y + ++ FD N Y S K+DE G RV K DF LWK+ T + W Sbjct: 131 YVLDGDVYFDIKKYENEYCKLSGYKLDELISGKRVEIDSKKHYSLDFSLWKK-TDIGIKW 189 Query: 205 ESPWGRGRPGWHIECSAMSSHYLG-KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 +S +G GRPGWH EC + Y + DIH GG+DL FPHHENE Q + E A+ Sbjct: 190 DSVFGLGRPGWHTECVLLIDEYFNHQTIDIHVGGIDLKFPHHENERIQFIAKNNKE-LAH 248 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 IW+HNG L + KMSKS GN I + + + + +R L T+Y +P++ + Sbjct: 249 IWLHNGHLQINDEKMSKSLGNVILVRDFI-------KKHNKNTLRWIFLTTNYTQPLNIS 301 Query: 324 VQRLTEAEILLSKWPQTS-------TSKGIIDPAVLSALY---------NDLNTVSAIQA 367 + +A K S K + ++ S+ Y +DLNT + Sbjct: 302 DDLIYQANKFFEKLTNLSKKTIQFIIKKDLKIKSINSSEYINKFNEYMEDDLNTSLVLSL 361 Query: 368 LHKLARESTKN---------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLI 418 + L ++ KN + L+ N +LG + N ++L + Sbjct: 362 IDLLIKQINKNIVDKNLDNFNLLIGSLNYILDVLGFDNV---FNYKFDNKTKELFLKWQE 418 Query: 419 LLKMKKFSSADYIRKQLESKGFI 441 L+K K+F+ AD IR +L +G + Sbjct: 419 LVKNKEFNKADLIRNKLIEQGIL 441 >gi|118465539|ref|YP_881564.1| cysteinyl-tRNA synthetase [Mycobacterium avium 104] gi|310947192|sp|A0QF76|MSHC_MYCA1 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|118166826|gb|ABK67723.1| cysteinyl-tRNA synthetase [Mycobacterium avium 104] Length = 384 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 182/358 (50%), Gaps = 36/358 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD++YR ++ V YV+N+TD+DD ++ERA + Sbjct: 13 MYVCGITPYDATHLGHAATYLAFDLIYR--QWLDLGHDVHYVQNVTDVDDPLLERAAR-- 68 Query: 88 PSIPINDAIS--IITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 D I + + F +D L LAP AT I ++ L++ ++ G A Sbjct: 69 ------DGIDWRALAEREVSLFREDMAALRILAPRDYVGATEAIADVVELVEKMLASGAA 122 Query: 146 YEANNE---IIFDTSSIPNYG---SFSRR---KIDEQKMGTRVPEKYHKKNPADFILWKR 196 Y + E I + + +G + R ++ ++ G P++ K + D +LW+ Sbjct: 123 YVVDGEFPDIYYRADATLQFGYESGYDRETMLRLFAERGGD--PQRPGKTDALDALLWRA 180 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 + P EP W SP+G GRPGWH+EC+A++ +G DI GGG DLIFPHHE A + C Sbjct: 181 ARPGEPSWPSPFGNGRPGWHVECAAIALSRIGSGLDIQGGGSDLIFPHHEFTAAHAECVR 240 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 + A ++H G + +G KMSKS GN + +++L GR IRL +L H+ Sbjct: 241 GERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSQLR------GRGVEPAAIRLGLLAGHF 294 Query: 317 REPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQAL 368 R ++ Q L EA L +W P + +I V L +DLNT A+ AL Sbjct: 295 RGDRYWSDQVLDEATARLRRWRTATALPAGPDATDVI-ARVRQYLADDLNTPKALAAL 351 >gi|302867391|ref|YP_003836028.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Micromonospora aurantiaca ATCC 27029] gi|302570250|gb|ADL46452.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Micromonospora aurantiaca ATCC 27029] Length = 412 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 189/366 (51%), Gaps = 32/366 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A MI FD++ R+ R + V YV+N+TDIDD ++ERA ++ Sbjct: 40 MYVCGITPYDATHLGHAATMITFDLVQRMWRDAGLD--VRYVQNVTDIDDPLLERAERD- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + ++ + T F +D L + P H A IP + + ++ G AY Sbjct: 97 -----GEDWKVLAMRETALFREDMEALRMIPPAHYVGAVESIPDIAEKVLMLLKDGAAYR 151 Query: 147 --EANNEIIFDTSSIPNYG---SFSRRKIDE---QKMGTRVPEKYHKKNPADFILWKRST 198 + ++ FD S+ P +G + +R ++ E ++ G PE+ K++P D +LW+ + Sbjct: 152 LDDGTGDVYFDISAAPRFGYESNLTREQMIELFAERGGD--PERAGKRDPLDPLLWRGAR 209 Query: 199 PMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W G GRPGWHIEC+ ++ + LG D+ GGG DLIFPHHE A + Sbjct: 210 EGEPSWPGGDLGPGRPGWHIECTVIALNLLGDRIDVQGGGNDLIFPHHECSAAHAERLTG 269 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A+ ++H G + L+G KMSKS GN + ++ L K +RLA++ HYR Sbjct: 270 EAPFADHYVHAGMIGLDGEKMSKSQGNLVFVSRLRADKV------DPMAVRLALMSGHYR 323 Query: 318 EPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 +T LTEA+ L +W + S + AV L +DL+T A+ A + A Sbjct: 324 SDRSWTDDLLTEAQERLGRWRRAAAAPAGPSGAALLAAVRERLADDLDTPGALAAADRWA 383 Query: 373 RESTKN 378 E T N Sbjct: 384 -EGTLN 388 >gi|224369114|ref|YP_002603278.1| CysS1 [Desulfobacterium autotrophicum HRM2] gi|223691831|gb|ACN15114.1| CysS1 [Desulfobacterium autotrophicum HRM2] Length = 668 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 229/472 (48%), Gaps = 51/472 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ NTL +K F+ +I +Y CGPTV+ H+G AR + D+L R L + G K Sbjct: 213 LKVLNTLTQKKELFKPNKSESIGIYSCGPTVHGRIHLGEARRFVFSDLLCRYLEFS-GYK 271 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+DDKIIE + + H + + T +N QF KD L T P Sbjct: 272 -VNHVMNITDLDDKIIEASEKAHMDM------DLFTEENIIQFKKDLDLLGIRDATKYPL 324 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 A+ H+ +MI L II +G YE + FD S +P+YG S +D+ +GT V + Y Sbjct: 325 ASLHVEEMISLADKIIENGFGYEKLRSVYFDVSKLPSYGRLSGVDLDKMNLGTTVDLDDY 384 Query: 184 HKKNPADFILWKRS--TPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF L KR ++ G + + WG RP WHI+C AM+ YL + FDIH Sbjct: 385 EKEDPRDFTLLKRVKLNELKKGIYYSTKWGNVRPSWHIQCPAMAMKYLSENFDIHTSARH 444 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIA + + AN W+H G + E +++ + F+T+ +L+ F Sbjct: 445 LIFPHHENEIAIAEAVTG-KLLANYWMHCGPVMFEDKEVDEKK-RFLTVEFVLKM-GFSE 501 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRL-------------TEAEILLSKWPQTSTSKGI 346 R +R +L ++Y+ + F+ +RL +A + + S + + Sbjct: 502 RE-----LRYWLLSSNYQRSLPFSRERLLAKRKSLKRVDDFIQALLNVENADNDSVVEDL 556 Query: 347 IDPAV---LSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------IFNASAHIL 392 + A+ +DLN A+ ++ K R K ++L+ I NA I Sbjct: 557 AQDTIDEFTKAMDDDLNISVALASIFKTVR---KGNNLIQKMEMTAQAAENIINAFKKID 613 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + + L+ R L K K + +AD IR +LE++G + D Sbjct: 614 AVLNVFSFDPPFLEQDTQVLMDRRNALRKGKDWEAADQIRVELENRGIEIND 665 >gi|308160745|gb|EFO63218.1| Cysteinyl-tRNA synthetase [Giardia lamblia P15] Length = 645 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 134/436 (30%), Positives = 205/436 (47%), Gaps = 56/436 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I N+L ++ E + PS + Y+CGPTVYD H+G+AR + FDV+ R+ Y+G + V Sbjct: 10 ITNSLTGRLEELRTRAPSTVLAYICGPTVYDSTHLGHARTYVTFDVIRRIFEDYFGLR-V 68 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y NITD+DDKII RA + S I + K Q+F D L+ T R T Sbjct: 69 HYQCNITDVDDKIIARAVERGSS------IFDVCRKYEQEFFSDMRTLSVRPFTVVTRVT 122 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI-------DEQKM---- 175 ++ +I IQ I+ +G AY + + FD N G +S K+ DE ++ Sbjct: 123 EYMADIILFIQKIMDNGFAYVSAGSVYFDVVVARNAG-YSYPKLRPLGSSSDELQLLIQN 181 Query: 176 ------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR------------GRPGWHI 217 RV EK + A + WK + P + W++ + R GRPGWHI Sbjct: 182 ADGVDSKNRVSEKRSSSDFALWKAWKETEPEDAKWDATFSRKNGAVSELITLPGRPGWHI 241 Query: 218 ECSAMSSHYLGK----VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 ECSAM++ LGK FD+H GG DL FPHH+NE+ Q + + ++H+G L + Sbjct: 242 ECSAMAAAALGKNTEGAFDLHLGGCDLQFPHHDNELIQLETWAKKKNMIGCFLHSGHLKI 301 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--- 330 G MSKS NF T+ E+L + A +R+ M Y +D+++ + A Sbjct: 302 AGDVMSKSKKNFKTVREVLNI-------FTANQVRMLFCMVPYSASLDYSISMMDAAVAK 354 Query: 331 ----EILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN 386 LS Q + + + + YN + Q + L+ + + I + Sbjct: 355 DKKITSFLSNCRQIIQHEEELSEPIKNLRYNTMEETLEAQTIEFLSNVDIAFRNDISIVS 414 Query: 387 ASAHILG-IEVCKEHL 401 A HI+ I+ CK ++ Sbjct: 415 AMNHIMSLIDNCKAYI 430 >gi|117928653|ref|YP_873204.1| cysteine--tRNA ligase [Acidothermus cellulolyticus 11B] gi|117649116|gb|ABK53218.1| Cysteine--tRNA ligase [Acidothermus cellulolyticus 11B] Length = 373 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 174/349 (49%), Gaps = 24/349 (6%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 +RMYVCG T YD H+G+A I DVL RLLR + V RN+TD+DD +++ A Sbjct: 23 GKVRMYVCGVTPYDVTHLGHAATYIWVDVLTRLLRQLGTD--VEVCRNVTDVDDVLLDAA 80 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 R+ S DA + + + +Q D L PTH+PRA N + ++ L ++ G Sbjct: 81 RRAGASY---DAFAAVQQFHFEQ---DMAALGVRPPTHEPRAHNFVRNVVSLAAGLVDAG 134 Query: 144 HAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----PEKYHKKNPADFILWKRSTP 199 AY N + F + +P S DE + P+ K+NP D +W+ S Sbjct: 135 KAYVRNGSVYFRGADVPVRAGLS---ADEARQLAAEFNDEPDDPAKENPFDVAIWRASGE 191 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 P W SPWG GRPGWH EC+AM+ G DIH GG DL FPHH E A + + Sbjct: 192 GVPAWPSPWGPGRPGWHAECAAMAMTVFGPALDIHAGGADLRFPHHAYEAALAEALTGVR 251 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A W+ G ++ GRKM+KS GN + +++LL A +R+ ++ + +P Sbjct: 252 PFARTWLRVGMVHHGGRKMAKSAGNLVLVSDLLAAHP-------AAALRMYVVHRRWPQP 304 Query: 320 IDFTVQRLTEAEILLSKWPQTSTSKGIID--PAVLSALYNDLNTVSAIQ 366 +F + L AE + + G D AVL+AL +DL+ +A Q Sbjct: 305 WEFDARELQRAEADVDALFTAAARPGRSDGREAVLAALRDDLDVPTAFQ 353 >gi|302546650|ref|ZP_07298992.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces hygroscopicus ATCC 53653] gi|302464268|gb|EFL27361.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces himastatinicus ATCC 53653] Length = 373 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 165/312 (52%), Gaps = 23/312 (7%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TDIDD ++ERA Sbjct: 39 RIYVCGITPYDATHMGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDIDDPLLERA--- 93 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + D + + + T F +D T L L P H A IP ++ L++ + G AY Sbjct: 94 ---VANGDDWTALAERETALFREDMTALRMLPPRHYIGAVESIPGIVPLVERLRDAGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E +I F S P +GS SR R + ++ G PE+ KKNP D +LW + Sbjct: 151 EVEGDIYFSVESDPAFGSVSRLDAEAMRLLSAERGGD--PERPGKKNPLDPMLWVAAREG 208 Query: 201 EPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ G GRPGWHIEC A++ +LG FD+ GGG DL FPHHE + + Sbjct: 209 EPSWDGGSLGPGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGASHAQVLTGER 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L G KMSKS GN + ++ L PA IRLA+L HYR Sbjct: 269 PFAQSYVHAGMVGLNGEKMSKSKGNLVFVSALRRDGVD-----PA-AIRLALLAHHYRSD 322 Query: 320 IDFTVQRLTEAE 331 ++T L +AE Sbjct: 323 WEWTDGVLRDAE 334 >gi|169629202|ref|YP_001702851.1| cysteinyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977] gi|310947193|sp|B1MPE6|MSHC_MYCA9 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|169241169|emb|CAM62197.1| Cysteinyl-tRNA synthetase (CysS) [Mycobacterium abscessus] Length = 412 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/415 (31%), Positives = 206/415 (49%), Gaps = 42/415 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+T +R++ P+ MYVCG T YD H+G+A + FD++YR ++ Sbjct: 18 QLRLYDTADRQVRPVT-TGPTAT-MYVCGITPYDATHLGHAATYLTFDLIYR--QWLDAG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTH 121 V YV+N+TDIDD + ERA + D I + + T+ F D T L L P Sbjct: 74 LDVHYVQNVTDIDDPLFERADR--------DGIDWRELGDRETELFRGDMTALRVLPPRE 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKID------ 171 RAT I +I L++ ++ G AY ++ ++ F + +G S I+ Sbjct: 126 YVRATESIACIIELVEKMLASGAAYVVDDPEYPDVYFRVDATEQFGYESGYDIETMSRLF 185 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 ++ G P + K N D +LW+ + P EP WE+ +G GRPGWH+ECSA+ LG Sbjct: 186 AERGGD--PGRPGKANELDALLWRAARPGEPSWEASFGPGRPGWHVECSAIVLRELGAGI 243 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DLIFPHHE A + + A ++H G + +G KMSKS GN + ++ L Sbjct: 244 DIQGGGSDLIFPHHEYSAAHAEAVTAQRRFARHYVHAGMIGWDGHKMSKSRGNLVKVSGL 303 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGI 346 PA +RL +L HYR ++ L +A+ L++W + S Sbjct: 304 TAQGVD-----PA-AVRLGLLAGHYRADRSWSDAVLADAQGRLARWRHAVALSAAPSARD 357 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLP---IFNASAHILGIEV 396 + V L +DL+T +A+ AL ++ HD + +A +LG+++ Sbjct: 358 VVARVRRYLADDLDTPNALAALDNWVTDALAYGGHDAAAGAQVRDAVDALLGVQL 412 >gi|47458983|ref|YP_015845.1| cysteinyl-tRNA synthetase [Mycoplasma mobile 163K] gi|61216201|sp|Q6KIE2|SYC_MYCMO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|47458311|gb|AAT27634.1| cysteinyl-tRNA synthetase [Mycoplasma mobile 163K] Length = 413 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/322 (35%), Positives = 173/322 (53%), Gaps = 21/322 (6%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCGPTVY+ HIGN +P++ FD+ R + EK ++ N+TDIDDKIIE+A +E+ Sbjct: 4 IYVCGPTVYNKVHIGNMKPIMTFDLFLRGANFI--EKQYLFLHNLTDIDDKIIEKASKEN 61 Query: 88 PS-IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + I++ S ++K P + + T++I +I I ++ G Y Sbjct: 62 KTELEISELYSDF-------YLKMLDEYNINKPDYIEKVTDNINMIIEYIGLLVKKGSGY 114 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 + FDT+ P YGS S +++ G K K NP DF+LWK+ T + W+S Sbjct: 115 IKKGSVYFDTTKYPEYGSISNLNLNKTLDGDD-DFKNEKNNPHDFVLWKK-TKVGITWKS 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 PW GRPGWH ECSA+ +H K DIHGGG+DLIFPH+ENE Q+ + A W Sbjct: 173 PWSEGRPGWHTECSALINHIFKKDQIDIHGGGIDLIFPHNENENIQNIALHGLS-LAKKW 231 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G + E KMSKS NFI ++ +E K+G ++ R +L T + PI + Sbjct: 232 LHVGHIKWENEKMSKSLNNFILADDFIE--KYGNDTF-----RTLILNTSFSTPISINEE 284 Query: 326 RLTEAEILLSKWPQTSTSKGII 347 L + + +K+ T ++ Sbjct: 285 ILESNKKISNKYQVTFNQANLL 306 >gi|304373037|ref|YP_003856246.1| Cysteinyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1] gi|304309228|gb|ADM21708.1| Cysteinyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1] gi|330723349|gb|AEC45719.1| cysteinyl-tRNA synthetase [Mycoplasma hyorhinis MCLD] Length = 400 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 142/421 (33%), Positives = 207/421 (49%), Gaps = 41/421 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCGPTVYD+ HIGN RP++ D+L R+ +Y+ E + ++ NIT+IDDKII++A E Sbjct: 7 IYVCGPTVYDYIHIGNLRPILTIDILNRVKKYFKYE--LFFLHNITNIDDKIIKKAILE- 63 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH---IPQMIYLIQNIILHGH 144 N + I+ + ++K PT + TN I IYL+Q G Sbjct: 64 -----NKTEAEISEFYYKDYMKKLKLFNIQKPTKIVKVTNELNTIKNYIYLLQK---QGF 115 Query: 145 AYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y+ N+++ F+TS + NYG S +KI+ ++ +K N DF+LWK++T + + Sbjct: 116 TYQENDDLYFNTSKVKNYGHISGQKINSLVSSSKTQ---YKSNANDFVLWKKTT-LGIKY 171 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 S G GRPGWH ECSA+ Y K DIH GG+DLIFPHHENE AQ + T Sbjct: 172 YSLLGLGRPGWHTECSALIFKYFNKQTIDIHSGGIDLIFPHHENENAQHFALTKKNITKK 231 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+H G + + KMSKS N ++ +E + V R +L + PID T Sbjct: 232 -WVHVGQIKINNEKMSKSLNNVFLVDNFVE-------KYHPDVYRHILLTSSISGPIDLT 283 Query: 324 VQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYN---DLNTVSAIQALHKLARESTKNHD 380 + L + + ++ + I L +YN L S +K KN D Sbjct: 284 NELLEANKNKIIQYKKAFFEHLINPRKSLKKVYNPILKLFLQSKFAQANKELNLLLKNKD 343 Query: 381 ---LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 L IFN +LG + LNK +EK + L K + AD IR++L + Sbjct: 344 YANLSFIFN----VLGFIFATKKLNKTDFALLEKWKK----LKSEKNYQKADKIREKLWN 395 Query: 438 K 438 K Sbjct: 396 K 396 >gi|29833189|ref|NP_827823.1| cysteinyl-tRNA synthetase [Streptomyces avermitilis MA-4680] gi|61216619|sp|Q828M2|MSHC_STRAW RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|29610311|dbj|BAC74358.1| putative ATP-dependent l-cysteine: 1D-myo-inositoyl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Streptomyces avermitilis MA-4680] Length = 409 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 118/345 (34%), Positives = 179/345 (51%), Gaps = 31/345 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++I++T + P + R+YVCG T YD H+G+A FD++ R+ + Sbjct: 17 RDLRIHDTATGGVIPLH---PGPVARIYVCGITPYDATHMGHAATYNAFDLVQRV--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII--TSKNTQQFVKDTTRLACLAP 119 ++ V YV+N+TD+DD ++ERA + D + + K T F +D T L L P Sbjct: 72 TKRQVHYVQNVTDVDDPLLERAER--------DGVDWVGLAEKETALFREDMTALRMLPP 123 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR------RKIDEQ 173 H A IP ++ L++ + G AYE + ++ F + P++G S R + + Sbjct: 124 QHYIGAVEAIPGIVPLVERLRDAGAAYELDGDVYFSVEADPHFGKVSNLDAAAMRLLSAE 183 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G P++ KKNP D +LW + EP W+ + GRGRPGWHIEC A++ +LG FD Sbjct: 184 RGGD--PDRPGKKNPLDPMLWMAAREGEPSWDGASLGRGRPGWHIECVAIALDHLGMGFD 241 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 + GGG DL FPHHE + + A ++H G + L G KMSKS GN + +++L Sbjct: 242 VQGGGSDLAFPHHEMGASHAQALTGEFPMAKAYVHAGMVALNGEKMSKSKGNLVFVSKLR 301 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 PA IRLA+L HYR ++T L EA L W Sbjct: 302 RDGVD-----PA-AIRLALLAHHYRSDWEWTDAVLEEALARLGTW 340 >gi|302206181|gb|ADL10523.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231] gi|308276423|gb|ADO26322.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19] Length = 416 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 128/397 (32%), Positives = 209/397 (52%), Gaps = 41/397 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 K + +Y+T +R I + ++ SN + +YVCG T YD H+G+A + FD++ R L Sbjct: 16 KVALSLYDTADRVI---KPVNCSNGEVGVYVCGITPYDSTHLGHAATYLAFDLINRQL-- 70 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACL 117 V +V+NITD+DD + ERA + D +S + + F D L+ + Sbjct: 71 IDAGHTVHFVQNITDVDDPLFERAER--------DGVSWRELGTDQINLFRSDMEALSVI 122 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYG---SFSRRKI 170 P A I ++I ++Q ++ +G AY + +I TS+ ++G ++SR + Sbjct: 123 PPRDYVGAMEAIDEVIEMVQALLDNGSAYIVDVDQYRDIYASTSATSHFGYESNYSRDLM 182 Query: 171 DE---QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 +E ++ G PE+ KK+P D ++W+ + EP W++P+G GRPGWHIECSA++++ L Sbjct: 183 EEFFAERGGD--PERPGKKDPLDALIWRSARKGEPSWDAPFGAGRPGWHIECSAIATNRL 240 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G F I GGG DLIFPHHE A + A + + AN ++H G + L+G KMSKS GN + Sbjct: 241 GNNFAIQGGGSDLIFPHHEFSAAHAEAAHHVHRMANHYVHAGMIALDGVKMSKSLGNLVF 300 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 +++L IRL + HYR P +++ + L++AE W + + + Sbjct: 301 VSQLTADGHH------PSAIRLGLYSGHYRSPREWSEKILSDAEKRRELWINAADTATDL 354 Query: 348 DPA------VLSALYNDLNTVSAIQALHKLARESTKN 378 A + L DL+T A+ A+ A+ KN Sbjct: 355 QAAQNLVASIRFYLSQDLDTPKALAAVDAWAKAIEKN 391 >gi|300858471|ref|YP_003783454.1| mshC ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685925|gb|ADK28847.1| MshC ligase [Corynebacterium pseudotuberculosis FRC41] gi|302330740|gb|ADL20934.1| Cysteinyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002] Length = 416 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 128/397 (32%), Positives = 209/397 (52%), Gaps = 41/397 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 K + +Y+T +R I + ++ SN + +YVCG T YD H+G+A + FD++ R L Sbjct: 16 KVALSLYDTADRVI---KPVNCSNGEVGVYVCGITPYDSTHLGHAATYLAFDLINRQL-- 70 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACL 117 V +V+NITD+DD + ERA + D +S + + F D L+ + Sbjct: 71 IDAGHTVHFVQNITDVDDPLFERAER--------DGVSWRELGTDQINLFRSDMEALSVI 122 Query: 118 APTHQPRATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYG---SFSRRKI 170 P A I ++I ++Q ++ +G AY + +I TS+ ++G ++SR + Sbjct: 123 PPRDYVGAMEAIDEVIEMVQALLDNGSAYIVDVDQYRDIYASTSATSHFGYESNYSRDLM 182 Query: 171 DE---QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 +E ++ G PE+ KK+P D ++W+ + EP W++P+G GRPGWHIECSA++++ L Sbjct: 183 EEFFAERGGD--PERPGKKDPLDALIWRSARKGEPSWDAPFGAGRPGWHIECSAIATNRL 240 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G F I GGG DLIFPHHE A + A + + AN ++H G + L+G KMSKS GN + Sbjct: 241 GNNFAIQGGGSDLIFPHHEFSAAHAEAAHHVHRMANHYVHAGMIALDGVKMSKSLGNLVF 300 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347 +++L IRL + HYR P +++ + L++AE W + + + Sbjct: 301 VSQLTADGHH------PSAIRLGLYSGHYRSPREWSEKILSDAEKRRELWINAADTATDL 354 Query: 348 DPA------VLSALYNDLNTVSAIQALHKLARESTKN 378 A + L DL+T A+ A+ A+ KN Sbjct: 355 QAAQNLVASIRFYLSQDLDTPKALAAVDAWAKAIEKN 391 >gi|13432247|sp|Q49784|MSHC_MYCLE RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase Length = 412 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 133/414 (32%), Positives = 204/414 (49%), Gaps = 37/414 (8%) Query: 4 KIKIYNTLERKITEFQA-IDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++Y+T +R++ A + P+ MYVCG T YD H+G+A + FD+++RL Sbjct: 15 ELRLYDTSDRQVRPVSAAVAPTCKATMYVCGITPYDATHLGHAATYLAFDLIHRLWLDLG 74 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV+N+TD+DD + ERA + + D + + F D L L P Sbjct: 75 HE--VHYVQNVTDVDDPLFERADRN--GVDWRD----LAEREVALFRDDMASLRILPPHD 126 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNE---IIFDTSSIPNYGSFSRRKID------E 172 AT I +++ L+ +++ G AY ++E I F + +G S D E Sbjct: 127 YVAATETIVEIVELVDKMLVSGAAYVIDDEYPDIYFRADATLQFGYESGYDRDTMLRLYE 186 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 Q G P + K D +LW+ + P EP W SP+G GRPGWH+EC+A++ +G D Sbjct: 187 QSGGD--PRRPGKNGELDALLWRAARPGEPSWSSPFGPGRPGWHVECAAIALSRIGIGLD 244 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 I GGG DLIFPHHE A + C + A ++H G + + KMSKS GN + ++ L Sbjct: 245 IQGGGSDLIFPHHEFTAAHAECVRGERRFARHYVHAGMIGWDEHKMSKSRGNLVLVSTLR 304 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-- 350 P IRL +L HYR ++ Q L +A L +W ++ D A Sbjct: 305 AQGA------PPSAIRLGLLAGHYRADRFWSSQLLDDAIARLHRWRTAASMPAGPDVADV 358 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTK--NHD-LLPIFNASA--HILGIEV 396 V L +DL+T AI AL ++ + HD P A+A +LG+++ Sbjct: 359 IARVRGYLADDLDTPKAIAALDGWVTDALEYGGHDAAAPKLLATAIDALLGVDL 412 >gi|16518968|gb|AAL25085.1| CysS [Wolbachia sp. wMelPop] Length = 204 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 95/211 (45%), Positives = 139/211 (65%), Gaps = 12/211 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +K F ID +++MYVCGPTVYD AHIGNAR ++V+DVL++LL++ YG+ Sbjct: 2 VRLYNTLTKKKELFTPIDKDHVKMYVCGPTVYDTAHIGNARSVVVYDVLFQLLKFCYGK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I I++ T+ F +D + C PTH+P+ Sbjct: 61 -VTYVRNITDIDDKIINAASEK------NSNIESISTYYTKAFHEDMRSINCAEPTHEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ +I LI++++ GHAYE++ + F+ S YG+ S +K DE G+RV + Sbjct: 114 ATKNVDYIIKLIEHLLQSGHAYESDKHVYFNIESYHEYGALSGKKTDELVPGSRVEVNEN 173 Query: 185 KKNPADFILWKRSTPME----PGWESPWGRG 211 KK+P DF+LWK + ++ W SPWG G Sbjct: 174 KKHPGDFVLWKPANDIDYKLSSYWNSPWGEG 204 >gi|315506205|ref|YP_004085092.1| cysteine/1-d-myo-inosityl 2-amino-2-deoxy-alpha-d-glucopyranoside ligase [Micromonospora sp. L5] gi|315412824|gb|ADU10941.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Micromonospora sp. L5] Length = 412 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 121/360 (33%), Positives = 185/360 (51%), Gaps = 31/360 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A MI FD++ R+ R + V YV+N+TDIDD ++ERA ++ Sbjct: 40 MYVCGITPYDATHLGHAATMITFDLVQRMWRDAGLD--VRYVQNVTDIDDPLLERAERD- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + ++ + T F +D L + P H A IP + + ++ G AY Sbjct: 97 -----GEDWKVLAMRETALFREDMEALRMIPPAHYVGAVESIPDIAEKVLMLLKDGAAYR 151 Query: 147 --EANNEIIFDTSSIPNYG---SFSRRKIDE---QKMGTRVPEKYHKKNPADFILWKRST 198 + ++ FD S+ P +G + +R ++ E ++ G PE+ K++P D +LW+ + Sbjct: 152 LDDGTGDVYFDISAAPRFGYESNLTREQMIELFAERGGD--PERAGKRDPLDPLLWRGAR 209 Query: 199 PMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W G GRPGWHIEC+ ++ + LG D+ GGG DLIFPHHE A + Sbjct: 210 EGEPSWPGGDLGPGRPGWHIECTVIALNLLGDRIDVQGGGNDLIFPHHECSAAHAERLTG 269 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A+ ++H G + L+G KMSKS GN + ++ L K +RLA++ HYR Sbjct: 270 EAPFADHYVHAGMIGLDGEKMSKSQGNLVFVSRLRADKV------DPMAVRLALMSGHYR 323 Query: 318 EPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 +T LTEA+ L +W + S + AV L +DL+T A+ A A Sbjct: 324 SDRSWTDDLLTEAQERLGRWRRAAAAPAGPSGAALLAAVRERLADDLDTPGALAAADSWA 383 >gi|25028195|ref|NP_738249.1| cysteinyl-tRNA synthetase [Corynebacterium efficiens YS-314] gi|259507253|ref|ZP_05750153.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium efficiens YS-314] gi|61216662|sp|Q8FTD0|MSHC_COREF RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|23493479|dbj|BAC18449.1| cysteinyl-tRNA synthetase [Corynebacterium efficiens YS-314] gi|259165196|gb|EEW49750.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Corynebacterium efficiens YS-314] Length = 430 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 37/377 (9%) Query: 5 IKIYNTLERKITEFQAIDPSN----IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + +Y+T ++++ + + PS + MYVCG T YD H+G+A + FD++YR+L Sbjct: 19 LALYDTADQQVKPVE-VPPSGSGTPVGMYVCGITPYDSTHLGHAATYLAFDLIYRVL--L 75 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + V YV+NITD+DD + ERA ++ D + TS+ F KD LA + P Sbjct: 76 DNDHQVHYVQNITDVDDPLFERAERDG-----VDWRELGTSQ-IDLFRKDMETLAVIPPK 129 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-SSI---------PNYGSFSRRKI 170 A I ++I ++ ++ G AY ++ D +SI NY + + ++ Sbjct: 130 DYIGAIESIDEVIEMVSTLLEEGAAYVVDDPEYPDVYASINATENFGYESNYDAATMAEL 189 Query: 171 DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV 230 ++ G P++ K+NP D +LW+ + EP WESP+G GRPGWHIECSA++++ LG Sbjct: 190 FAERGGD--PDRPGKRNPMDALLWRAAREGEPSWESPFGPGRPGWHIECSAIATNRLGHS 247 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDI GGG DL+FPHHE A + A +E+ A ++H G ++ +G KMSKS GN ++ Sbjct: 248 FDIQGGGSDLMFPHHEFSAAHAEAAHGVERMAKHYVHAGMISQDGVKMSKSLGNLEFVHR 307 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 L G IRL + HYR D++ + L AE L+ W T + A Sbjct: 308 LTAAGHEPG------AIRLGVYAHHYRGDRDWSDEILAAAEARLALWRSAITVATDVQAA 361 Query: 351 VLSA------LYNDLNT 361 V + L NDL+T Sbjct: 362 VDAVAQLRTHLSNDLDT 378 >gi|66818080|ref|XP_642733.1| cysteinyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74997262|sp|Q54ZY3|SYCM_DICDI RecName: Full=Probable cysteinyl-tRNA synthetase, mitochondrial; AltName: Full=Cysteine--tRNA ligase; Short=CysRS; Flags: Precursor gi|60470862|gb|EAL68834.1| cysteinyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 583 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 144/447 (32%), Positives = 215/447 (48%), Gaps = 47/447 (10%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I Y CGPTVY +HIG+AR + D++ R+L Y+ + +V +TDIDDKII +++Q Sbjct: 77 ISWYTCGPTVYSSSHIGHARNYMTVDIIQRILINYFRFNII-HVMGLTDIDDKIINKSKQ 135 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E S S ++ K Q+F +D L P R + HI ++I I+ I + Sbjct: 136 ELISA------SELSKKFEQEFFEDLKSLNIKPPMFTTRVSEHIDEIIKYIEKIKENQLT 189 Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWK--------RS 197 YE+ +IFD + S R ++Q + KK+ DF+LWK Sbjct: 190 YESTKSVIFDVNKFGIDRYCSLRAANQQIKSDDTLLEKDKKSSQDFVLWKAYNENIDIDG 249 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------ 251 T W+SP+G+GRPGWHIECSAM D+H GG+DL FPHH+NEIAQ Sbjct: 250 TGNPVCWDSPFGKGRPGWHIECSAMIDSIFKDHLDVHSGGVDLEFPHHQNEIAQCEGHSH 309 Query: 252 SCCADRIEKT--ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 S + E T AN + H G L L KMSKS GN ITI + L + A +R Sbjct: 310 SHGSGDAESTQWANYFFHIGHLILNNEKMSKSLGNVITIRDFLS-------RYSANSLRW 362 Query: 310 AMLMTHYREPIDF---TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQ 366 L+ Y +P+ F T+Q EI W + SK ++ ++ + N +I+ Sbjct: 363 ICLIHKYNDPLSFSDETLQLCISKEIKFLNWFKIVRSKLKLEQTSVNKVKKTFN--HSIE 420 Query: 367 ALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNIS-------IAIEKLVQER 416 L++L+ TK DL FN + I +E+ + N++++ ++ V+ Sbjct: 421 LLNQLSE--TKYLIEKDLKDDFNTPSVIKRLELLMKQTNESMNSIDTDLLFNVQDYVESI 478 Query: 417 LILLKMKKFSSADYIRKQLESKGFILE 443 L + ++ S K ES F+LE Sbjct: 479 LNIFGLEVNSEISDHNKTDESNQFLLE 505 >gi|289705192|ref|ZP_06501594.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Micrococcus luteus SK58] gi|289558082|gb|EFD51371.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Micrococcus luteus SK58] Length = 422 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/423 (30%), Positives = 205/423 (48%), Gaps = 49/423 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++T + T D +YVCG T YD H+G+A + FD+L+R R E Sbjct: 18 RLRLHDTATGR-TRHPGNDAQRASLYVCGITPYDATHLGHASTYVAFDLLHRYWRAAGLE 76 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD ++ERA + + T F D L LAP H Sbjct: 77 --VAYVQNVTDVDDPLLERAEA------TGVDWRALAEEQTDLFRADMAALEVLAPGHYV 128 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPN-----YGSFSRRKID 171 AT + ++ ++ ++ G AY E + ++ FD + + G S +D Sbjct: 129 GATEAVGLVVDAVETMLAAGRAYRVPGGDGEPDGDVYFDVRAAQSATDWRLGQVSAMGLD 188 Query: 172 E------QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSS 224 E ++ G P++ K++P D +LW+ EP W+ G GRPGWHIECS +S Sbjct: 189 EMAAVFPERGGD--PDRPGKRDPLDPLLWRVHREGEPAWDGRSLGSGRPGWHIECSVISR 246 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +L F + GGG DL FPHHE A + D + A+ + H G + L+G KMSKS GN Sbjct: 247 AHLPAPFTVQGGGSDLRFPHHEFSAAHATAVDGL-PLAHTYAHTGMVALDGEKMSKSLGN 305 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------P 338 ++ L R +R A+L HYR +++ Q L +A+ +++W P Sbjct: 306 LELVSRLR------ARGVEPVAVRAAILAHHYRSDWEWSEQVLADAQARVARWRAALDGP 359 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----HDLLPIFNASAHILG 393 + ++D AV +AL +DL+ A++AL A + D +P+ + A +LG Sbjct: 360 HAAAGVAVLD-AVHAALSDDLDAPRALEALDAWAAGTLPGLVEAAADPVPVIDVVAALLG 418 Query: 394 IEV 396 + + Sbjct: 419 LRL 421 >gi|54024903|ref|YP_119145.1| cysteinyl-tRNA synthetase [Nocardia farcinica IFM 10152] gi|61216443|sp|Q5YVL0|MSHC_NOCFA RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|54016411|dbj|BAD57781.1| putative ATP-dependent L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Nocardia farcinica IFM 10152] Length = 412 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 205/390 (52%), Gaps = 41/390 (10%) Query: 5 IKIYNTLERKITEFQAIDP-SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++Y+T +R++ + + P + MYVCG T YD H+G+A + FD++ R+LR G Sbjct: 19 LRLYDTADRQV---RPVAPGATATMYVCGITPYDATHLGHAATYLTFDLVNRVLRD--GG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTH 121 V YV+N+TD+DD + ERA + D + + S+ + F D L L P Sbjct: 74 HDVHYVQNVTDVDDPLFERAAR--------DGVDWRELGSREIELFRTDMAALRVLPPRE 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG--SFSRRKIDEQKM 175 A + +++ +Q ++ +G AY ++ +I F T + +G S R E+ Sbjct: 126 YVGAVESVEEVVEFVQKLLANGAAYVVDDPDFPDIYFRTDATEQFGYESGYDRATMERLF 185 Query: 176 GTRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 R P++ K++P D +LW+ + P EP W +P+G GRPGWHIECSA++ + LG FDI Sbjct: 186 AERGGDPDRPGKRDPLDALLWRAARPGEPSWPAPFGAGRPGWHIECSAIALNRLGPEFDI 245 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DLI+PHHE A + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 246 QGGGSDLIYPHHEYSAAHAESVVAGRRFARHYVHAGLIGLDGEKMSKSRGNLVLVSTL-- 303 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTSKGIIDPAVL 352 +K G PA IRL +L HYR+ +T L A L++W T+ S G PA Sbjct: 304 -RKDGVD--PA-AIRLGLLDGHYRQDRMWTDAVLEAALARLARWRSATALSAG---PAAH 356 Query: 353 SA-------LYNDLNTVSAIQALHKLARES 375 L +DL++ A+ A+ E+ Sbjct: 357 DTIARLRQHLADDLDSPKALAAVDNWVTEA 386 >gi|330805180|ref|XP_003290564.1| hypothetical protein DICPUDRAFT_155084 [Dictyostelium purpureum] gi|325079310|gb|EGC32916.1| hypothetical protein DICPUDRAFT_155084 [Dictyostelium purpureum] Length = 591 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 74/478 (15%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I Y CGPTVY +HIG+AR + D++ R+L+ Y+ + +V +TDIDDKI+ ++R+ Sbjct: 82 ISWYTCGPTVYSSSHIGHARNYVTVDIIQRILQDYFRLNII-HVMGMTDIDDKILIKSRE 140 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + S +S I K +F++D L P R + H+ ++I I+ I + Sbjct: 141 KQISAS---ELSRIYEK---EFIEDLKSLNIKPPMFTTRVSEHMGEIINYIEKIRDNNLT 194 Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR--------S 197 YE+ I F+ + R I+E + + K N DF+LWK Sbjct: 195 YESTKSIFFNVEKFGFDRYSTLRAINEHGESKDLVDDTKKSN-QDFVLWKSFNKDLDYDG 253 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------ 251 GWESP+G+GRPGWHIECSAM + G D+H GG+DL FPHH+NEIAQ Sbjct: 254 KNEAVGWESPFGKGRPGWHIECSAMINSIFGNHLDVHSGGIDLEFPHHQNEIAQCEGHHS 313 Query: 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 C D + AN ++H G L+L+ KMSKS N ITI + L+ + +R Sbjct: 314 ECNKDGSYQWANYFLHVGHLHLKNVKMSKSLNNVITIRDFLD-------KYTPNTLRWLC 366 Query: 312 LMTHYREPI---DFTVQRLTEAEILLSKWPQ-------------TSTSKGIIDPAVL--- 352 L+ Y +P+ D T++ E E+L W + K D A L Sbjct: 367 LIHRYTDPLVYSDETLKLCVEKELLFINWFKFVQNKLDEELVSVDKVKKTFNDSAALLEQ 426 Query: 353 ---------SALYNDLNT---VSAIQALHKLARESTKNHDLLPIFNASAHI------LGI 394 L ND +T V ++Q+L K RES D ++N +I G+ Sbjct: 427 LSNTKLKVEKDLANDFDTPAVVESLQSLMKQTRESIDTIDTDLLYNIQDYIKSILNVFGL 486 Query: 395 EVCK-EHLNKNISIAIEKLVQERLILLK--MKKF-----SSADYIRKQLESKGFILED 444 +V +L N+ + + E L+ L+ +KK +S D K+++SK + + D Sbjct: 487 DVSNLSNLPTNVGDNTNEFLLETLMDLRSDLKKLLKDVPNSQDPSFKEIKSKLYKITD 544 >gi|134098795|ref|YP_001104456.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|310947213|sp|A4FBV6|MSHC_SACEN RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|133911418|emb|CAM01531.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 412 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/414 (30%), Positives = 204/414 (49%), Gaps = 38/414 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++++T ++ A RMYVCG T YD H+G+A + FD+++R+ + Sbjct: 17 RPLRLFDTAAGEVRPVTA--GRTARMYVCGITPYDATHLGHAATYLAFDLVHRI--WLDN 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N+TDIDD ++ERA ++ N+ ++ + T F +D L + PT Sbjct: 73 GHDVHYVQNVTDIDDPLLERANRD------NEDWVVLAMRETALFREDMEALRVVPPTDF 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSI------PNYGSFSRRKIDE 172 A IP++ + ++ G AY +++ + F S+ NY + + Sbjct: 127 IGAVESIPEIEEAVGKLLASGAAYRVDDDEYPDVYFRHSATGRFGYESNYDEATMLDLSA 186 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K++P D +LW+ + EP WES G GRPGWH+ECS ++ + LG FD Sbjct: 187 ERGGD--PDRKGKEHPLDALLWRMARDGEPSWESELGPGRPGWHLECSVIALNRLGMGFD 244 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 + GGG DL FPHHE A + A + H G + L+G KMSKS GN + ++ L Sbjct: 245 VQGGGSDLAFPHHEFSAAHAEALAGDHPFARHYCHAGMIGLDGEKMSKSKGNLVFVSRLR 304 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG--IIDPA 350 G R P IRLA+L HYR +T LT+ L++W + + +P Sbjct: 305 -----GDRVDPM-AIRLALLDGHYRSDRSWTADALTKGSARLARWREAVALEAGPSAEPV 358 Query: 351 V---LSALYNDLNTVSAIQAL-----HKLARESTKNHDLLPIFNASAHILGIEV 396 V L +DL+T A+ A+ L R I +A +LG+++ Sbjct: 359 VERLRDRLSDDLDTERALLAVDAWVDEALCRRGGDAEAPAAIRDAVDGLLGVQL 412 >gi|291005851|ref|ZP_06563824.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 404 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/414 (30%), Positives = 204/414 (49%), Gaps = 38/414 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++++T ++ A RMYVCG T YD H+G+A + FD+++R+ + Sbjct: 9 RPLRLFDTAAGEVRPVTA--GRTARMYVCGITPYDATHLGHAATYLAFDLVHRI--WLDN 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N+TDIDD ++ERA ++ N+ ++ + T F +D L + PT Sbjct: 65 GHDVHYVQNVTDIDDPLLERANRD------NEDWVVLAMRETALFREDMEALRVVPPTDF 118 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSI------PNYGSFSRRKIDE 172 A IP++ + ++ G AY +++ + F S+ NY + + Sbjct: 119 IGAVESIPEIEEAVGKLLASGAAYRVDDDEYPDVYFRHSATGRFGYESNYDEATMLDLSA 178 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K++P D +LW+ + EP WES G GRPGWH+ECS ++ + LG FD Sbjct: 179 ERGGD--PDRKGKEHPLDALLWRMARDGEPSWESELGPGRPGWHLECSVIALNRLGMGFD 236 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 + GGG DL FPHHE A + A + H G + L+G KMSKS GN + ++ L Sbjct: 237 VQGGGSDLAFPHHEFSAAHAEALAGDHPFARHYCHAGMIGLDGEKMSKSKGNLVFVSRLR 296 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG--IIDPA 350 G R P IRLA+L HYR +T LT+ L++W + + +P Sbjct: 297 -----GDRVDPM-AIRLALLDGHYRSDRSWTADALTKGSARLARWREAVALEAGPSAEPV 350 Query: 351 V---LSALYNDLNTVSAIQAL-----HKLARESTKNHDLLPIFNASAHILGIEV 396 V L +DL+T A+ A+ L R I +A +LG+++ Sbjct: 351 VERLRDRLSDDLDTERALLAVDAWVDEALCRRGGDAEAPAAIRDAVDGLLGVQL 404 >gi|296129854|ref|YP_003637104.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Cellulomonas flavigena DSM 20109] gi|310947177|sp|D5UFA8|MSHC_CELFN RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|296021669|gb|ADG74905.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Cellulomonas flavigena DSM 20109] Length = 415 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/389 (29%), Positives = 197/389 (50%), Gaps = 39/389 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++ +T ++ A P + R+YVCG T YD H+G+A + FDVL R + Sbjct: 17 EPVRVLDTATGRLV-VAATGP-HARLYVCGITPYDATHLGHASTYVAFDVLVRA--WLDE 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 K VTY N+TD+DD ++ERA + D + ++ T + D T L + P Sbjct: 73 GKTVTYASNVTDVDDPLLERATAT--GVDWRD----LAAQQTALYASDMTTLGVVPPDVY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-----EANNEIIFDTSSIPNYGSFSRRK------ID 171 +PQ++ + ++ AY + +++ D S+ P +GS + + + Sbjct: 127 RGVVESVPQVVAAVDALLSRDAAYRLPAPDGGDDVYADLSADPGFGSVAGLEHAAMLALS 186 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYLGKV 230 ++ G P++ K++P D +LW+ P EP W++P GRGRPGWH+EC+ ++S LG Sbjct: 187 AERGGD--PDRPGKRSPLDPLLWRAERPGEPAWDAPGLGRGRPGWHVECAVIASDGLGVP 244 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ GGG DL FPHHE+ + + A +H G + G KMSKS GN + +++ Sbjct: 245 FDVQGGGSDLAFPHHESSASHLRVLTGTPQPAAAHVHTGMVGYRGHKMSKSLGNLVLVSQ 304 Query: 291 LLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---- 345 L+ P+ +RLA+L YR ++T L A+ +++W + + G Sbjct: 305 LVADGV-------EPMAVRLAVLAHRYRSDWEWTDDVLATAQQRVARWRRALSGNGGPAA 357 Query: 346 --IIDPAVLSALYNDLNTVSAIQALHKLA 372 ++D V +A+ +DL+T A+ + A Sbjct: 358 QPVLD-GVRAAVADDLDTPRALAVVDAWA 385 >gi|15841621|ref|NP_336658.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|13881872|gb|AAK46472.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] Length = 375 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 194/393 (49%), Gaps = 42/393 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD+++RL E + YV+NITDIDD + ERA ++ Sbjct: 1 MYVCGITPYDATHLGHAATYVTFDLIHRLWLDLGHE--LHYVQNITDIDDPLFERADRD- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + D + F +D L L P AT I +M+ LI+ ++ G AY Sbjct: 58 -GVDWRD----LAQAEVALFCEDMAALRVLPPQDYVGATEAIAEMVELIEKMLACGAAYV 112 Query: 148 ANNE------IIFDTSSIPNYGSFSRRKID------EQKMGTRVPEKYHKKNPADFILWK 195 + E I F + +G S D E++ G P + K + D +LW+ Sbjct: 113 IDREMGEYQDIYFRADATLQFGYESGYDRDTMLRLCEERGGD--PRRPGKSDELDALLWR 170 Query: 196 RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 + P EP W SP+G GRPGWH+EC+A++ +G DI GGG DLIFPHHE A + C Sbjct: 171 AARPGEPSWPSPFGPGRPGWHVECAAIALSRIGSGLDIQGGGSDLIFPHHEFTAAHAECV 230 Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH 315 + A ++H G + +G KMSKS GN + ++ L +RL +L H Sbjct: 231 SGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSALRAQDV------EPSAVRLGLLAGH 284 Query: 316 YREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-------LYNDLNTVSAIQAL 368 YR ++ Q L EA L +W +T+T+ PA + L +DL+T AI AL Sbjct: 285 YRADRFWSQQVLDEATARLHRW-RTATAL-PAGPAAVDVVARVRRYLADDLDTPKAIAAL 342 Query: 369 HKLARESTK--NHDL-LPIFNASA--HILGIEV 396 ++ + HD P A+A +LG+++ Sbjct: 343 DGWVTDAVEYGGHDAGAPKLVATAIDALLGVDL 375 >gi|258652959|ref|YP_003202115.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Nakamurella multipartita DSM 44233] gi|310947206|sp|C8X8S1|MSHC_NAKMY RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|258556184|gb|ACV79126.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Nakamurella multipartita DSM 44233] Length = 405 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 201/393 (51%), Gaps = 38/393 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +++Y++ E + DP + MYVCG T YD H+G+A + FD+++R+ + Sbjct: 17 RPLRLYDS---ATGEVRPTDPGPVATMYVCGITPYDATHLGHAATYLAFDLVHRM--WLD 71 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAP 119 V YV+NITDIDD ++ERA++ D +S + + F D T L + P Sbjct: 72 AGHQVHYVQNITDIDDPLLERAQR--------DGVSWRKLADREIGLFRDDMTALRVIPP 123 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRR------K 169 A + ++ +Q +I G AY +E + FD ++ +G SR + Sbjct: 124 ADYIGAVEAMDEVTAAVQELIDAGAAYRVPDEQYPDVYFDVTASGQFGYESRYDEATMLR 183 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 + ++ G P++ K+ D +LW+ P EP W SP G GRPGWHIEC+ ++ + +G Sbjct: 184 LSAERGGD--PDRPGKRQRLDPLLWRVERPQEPSWSSPMGPGRPGWHIECAVIAGNRIGP 241 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 V D+ GGG DLIFPHHE A + A + H G + L+G KMSKS GN + ++ Sbjct: 242 VIDLQGGGSDLIFPHHECSAAHAEVLSGKRPFARHYTHAGMIGLDGEKMSKSRGNLVFVS 301 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP 349 LL + +RL +L HYR+ ++ + LT AE L++W + G+ Sbjct: 302 RLLH------QGVDPMAMRLGLLAGHYRQDRAWSDEVLTAAEARLARWRAAAARTGVDAD 355 Query: 350 AVLSA----LYNDLNTVSAIQALHKLARESTKN 378 +V+ A L +DL+T + I+AL A + T + Sbjct: 356 SVVQAIRDGLADDLDTPTVIEALDAWAADETLD 388 >gi|159111673|ref|XP_001706067.1| Cysteinyl-tRNA synthetase [Giardia lamblia ATCC 50803] gi|11528339|gb|AAG37230.1| cysteinyl-tRNA synthetase [Giardia intestinalis] gi|157434160|gb|EDO78393.1| Cysteinyl-tRNA synthetase [Giardia lamblia ATCC 50803] Length = 645 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 135/439 (30%), Positives = 211/439 (48%), Gaps = 62/439 (14%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + N+L ++ E + PS + Y+CGPTVYD H+G+AR + FDV+ R+L Y+G + V Sbjct: 10 LTNSLTGRLEELRTHAPSTVLAYICGPTVYDSTHLGHARTYVTFDVVRRILEDYFGLR-V 68 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y NITD+DDKII RA + S I I K Q+F+ D L+ T R T Sbjct: 69 RYQCNITDVDDKIIARAVERGSS------IFDICRKYEQEFLSDMHTLSVRPFTVVTRVT 122 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKI-------DEQKM---- 175 ++ +I IQ I+ +G AY + + FD ++ + G +S K+ DE ++ Sbjct: 123 EYMADIILFIQKIMDNGFAYVSAGSVYFDVAAARSAG-YSYPKLRPLGSSSDELQLLIQN 181 Query: 176 ------GTRVPEKYHKKNPADFIL---WKRSTPMEPGWESPWGR------------GRPG 214 RV E K++ +DF L WK + P + W++ + GRPG Sbjct: 182 ADGMDSKNRVSE---KRSASDFALWKAWKETEPEDAKWDATFSHKNGAVSELITLPGRPG 238 Query: 215 WHIECSAMSSHYLGK----VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 WHIECSAM++ LGK FD+H GG DL FPHH+NE+ Q + ++H+G Sbjct: 239 WHIECSAMAAAVLGKDTGGAFDLHLGGCDLQFPHHDNELIQLETWAGKKNMIGCFLHSGH 298 Query: 271 LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 L + G MSKS NF T+ E+L + A +R+ M Y +D+++ + A Sbjct: 299 LKIAGDVMSKSKKNFKTVREILSI-------FTANQVRMLFCMVPYSASLDYSISMMDAA 351 Query: 331 -------EILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 LS Q + + + + Y+ Q + L+ T + + Sbjct: 352 VAKDKKITSFLSNCRQIIQHEEELSEPIKNLRYSTTEEALEAQTIEFLSNVDTAFRNDIN 411 Query: 384 IFNASAHI-LGIEVCKEHL 401 I +A +H+ L I+ CK ++ Sbjct: 412 IVSAMSHVMLLIDNCKAYI 430 >gi|38233849|ref|NP_939616.1| cysteinyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129] gi|61216544|sp|Q6NH81|MSHC_CORDI RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|38200110|emb|CAE49790.1| cysteinyl-tRNA synthetase [Corynebacterium diphtheriae] Length = 414 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 195/384 (50%), Gaps = 33/384 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +++T ++ I + +D + +YVCG T YD H+G+A + FD++ R L G + Sbjct: 19 LSLFDTSDQLIKPVE-VDTPEVGVYVCGITPYDSTHLGHAATYLTFDLINRQL-IDAGHR 76 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 V +V+NITD+D+ + ERA + D + + S F D L+ + P H Sbjct: 77 -VHFVQNITDVDEPLFERA--------LRDGVDWRELGSSQIDLFRSDMENLSVIPPRHY 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAY----EANNEIIFDTSSIPNYG--SFSRRKIDEQKMG 176 A IP++I +++ ++ +G AY ++ +I ++ +G S R++ EQ Sbjct: 128 VGAMESIPEVIAMVETMLANGTAYIVESDSYRDIYASITATTQFGYESHYSRELMEQFFA 187 Query: 177 TRV--PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 R PE+ KK+ D ++W+ EP W++P+G GRPGWH+ECSA+++H+LG F I Sbjct: 188 ERGGDPERVGKKDSLDALIWRAHRLGEPSWDAPFGAGRPGWHVECSAIATHHLGSHFAIQ 247 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DLIFPHHE A + + A ++H G + L+G KMSKS GN + ++ L Sbjct: 248 GGGSDLIFPHHEFSAAHAEATFGESRMAGHYVHTGMIGLDGTKMSKSLGNLVFVSRLTS- 306 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---- 350 + IRL + HYR+ D++ LT A+ W + + + Sbjct: 307 -----EGYHPSDIRLGVFAGHYRDDRDWSTDLLTAAQERRQAWITAADNARDVQQVQQTI 361 Query: 351 --VLSALYNDLNTVSAIQALHKLA 372 + L NDLNT + + + A Sbjct: 362 QKIRHLLANDLNTPAVLAEVDNWA 385 >gi|256384189|gb|ACU78759.1| cysteine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12] gi|256385021|gb|ACU79590.1| cysteine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455708|gb|ADH21943.1| cysteine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 441 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 141/440 (32%), Positives = 212/440 (48%), Gaps = 41/440 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y CGPTVY++ HIGNARP+++ DVL R L+ V Y++NITDIDDKII +A Sbjct: 19 INLYCCGPTVYNYIHIGNARPVLLVDVLIRYLK--SRNIKVNYLQNITDIDDKIILKALD 76 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + +N+ ++ K T +++D L P + + +MI I+N++ A Sbjct: 77 NN----LNEL--EVSQKYTTAYLEDLKSLNINQPDKIILISQKMNEMIDFIKNLVDINAA 130 Query: 146 YEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y + ++ FD N Y S K+DE G R+ K DF LWK+ T + W Sbjct: 131 YVLDGDVYFDIKKYENEYCKLSGYKLDELISGKRIEIDSKKHYSLDFSLWKK-TDIGIKW 189 Query: 205 ESPWGRGRPGWHIECSAMSSHYLG-KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 S +G GRPGWH EC + Y + DIH GG+DL FPHHENE Q + E A+ Sbjct: 190 NSVFGLGRPGWHTECVLLIDEYFNHQTIDIHVGGIDLKFPHHENERIQFIAKNNKE-LAH 248 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 IW+HNG L + KMSKS GN I + + + +R L T+Y +P++ + Sbjct: 249 IWLHNGHLQINDEKMSKSLGNVILVRDF-------NKQHNKNTLRWIFLTTNYTQPLNIS 301 Query: 324 VQRLTEAEILLSKWPQTS--TSKGIID-----PAVLSALY---------NDLNTVSAIQA 367 + +A K S T + II ++ S+ Y +DLNT + Sbjct: 302 DDLIYQANKFFEKLTNLSKKTIQFIIKNDLKIQSINSSEYINKFNEYMEDDLNTSLVLSL 361 Query: 368 LHKLARE-----STKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 + L ++ KN D + S +IL + N ++L + L+K Sbjct: 362 IDLLIKQINKDIVDKNLDNFNLLIGSLNYILDVLGFNNVFNYKFDNKTKELFLKWQELVK 421 Query: 422 MKKFSSADYIRKQLESKGFI 441 K+F+ AD IR +L +G + Sbjct: 422 NKEFNKADIIRNKLIEQGIL 441 >gi|262202368|ref|YP_003273576.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Gordonia bronchialis DSM 43247] gi|310947185|sp|D0LDR0|MSHC_GORB4 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|262085715|gb|ACY21683.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Gordonia bronchialis DSM 43247] Length = 413 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 183/345 (53%), Gaps = 32/345 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+T +R + A P+ +YVCG T YD H+G+A + FD + R+LR + Sbjct: 19 LRLYDTADRAVRPV-APGPTAT-LYVCGITPYDATHLGHAATYVTFDQVNRVLRDQGHD- 75 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+NITD+DD + ERA + D + + S+ Q F D T L L P Sbjct: 76 -VHYVQNITDVDDPLFERAER--------DGVDWRELGSEQIQLFRDDMTALRVLPPRDY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYG---SFSRRKIDE--- 172 A + ++I ++ ++ G AY ++ ++ F T + +G + R + Sbjct: 127 IGAMESVDEVIEAVEKLLASGAAYVVDDPEYPDVYFRTDATEQFGYESGYDRATMARFFA 186 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K++P D +LW+ + EP WE+P+G GRPGWHIECSA++ + LG FD Sbjct: 187 ERGGD--PDRAGKRDPLDAVLWRAARDGEPSWEAPFGPGRPGWHIECSAIALNRLGIEFD 244 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 I GGG DLIFPHHE A + A ++H G + L+G KMSKS GN + ++ L Sbjct: 245 IQGGGNDLIFPHHEFSAAHGEALTDSRRFARHYVHTGMVGLDGEKMSKSRGNLVFVSVL- 303 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 ++ G PA IRLA+L HYR +T L A L +W Sbjct: 304 --RRDGVD--PA-AIRLALLADHYRSDRMWTDDVLATAVDRLQRW 343 >gi|253742420|gb|EES99254.1| Cysteinyl-tRNA synthetase [Giardia intestinalis ATCC 50581] Length = 644 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 141/469 (30%), Positives = 218/469 (46%), Gaps = 60/469 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 I N+L ++ E + PS + Y+CGPTVYD H+G+AR + FD+ R+L Y+G + + Sbjct: 10 ITNSLTGRLEELRTRAPSTVLAYICGPTVYDSTHLGHARTYVTFDIARRILEDYFGLR-I 68 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y NITD+DDKII RA I +I I K +F+ D L+ T R T Sbjct: 69 HYQCNITDVDDKIIARA------IERGSSIFDICRKYEHEFLSDMRALSVRPFTVLTRVT 122 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG----------------SFSRRKI 170 ++ +I IQ II +G AY + + FD + N G + + Sbjct: 123 EYMADIILFIQKIIDNGFAYVSAGSVYFDVVAARNAGYVYPKLRPLGSSSDELQLLIQNV 182 Query: 171 DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR------------GRPGWHIE 218 D RV EK + A + WK + P + W + + GRPGWHIE Sbjct: 183 DGIDSKNRVAEKRSSSDFALWKAWKETEPEDAKWNATFSYKDGDKLEQITLPGRPGWHIE 242 Query: 219 CSAMSSHYLGK----VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 CSAM++ LGK FD+H GG DL FPHH+NE+ Q R ++ ++H+G L + Sbjct: 243 CSAMAAAVLGKSTEGAFDLHLGGCDLQFPHHDNELIQLETWARNKEMIGYFMHSGHLKIA 302 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 G MSKS NF T+ E+L + A +R+ M Y +D+++ + A Sbjct: 303 GDVMSKSKKNFRTVREILSI-------FTANQVRMLFCMVPYNASLDYSISMMDAAVAKD 355 Query: 335 SKWPQ-TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL-----LPIFNAS 388 K + II LS +L ++ +AL + E N D + I + Sbjct: 356 KKITSFLANCHQIIHADELSRPLENLRYDASEEALAAQSMEFLSNIDAAFRNDINIVSVM 415 Query: 389 AHILG-IEVCKEHL------NKNISIAIEKLVQERLI-LLKMKKFSSAD 429 HI+ I+ CK ++ K I+ + V+++++ +L + FS A+ Sbjct: 416 NHIISLIDSCKAYIFACQTREKQINTFLLSSVRDKIVHILSIMGFSYAE 464 >gi|15384254|gb|AAK96213.1|AF405551_1 cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 406 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 186/357 (52%), Gaps = 37/357 (10%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 S+M L DIH GG DL+FPHHENE Q+ CA +E A W+HNGF+N+ Sbjct: 170 SSMVFETLALTDTPYQIDIHAGGADLVFPHHENEACQTRCAFGVE-LAKYWMHNGFVNIN 228 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 KMSKS GN I + L +++ ++R +L HYR ++F + L ++ L Sbjct: 229 NEKMSKSLGNSFFIKDAL-------KNYDGEILRNYLLGVHYRSVLNFNEEDLLMSKKRL 281 Query: 335 SKW----PQTSTSKGIIDP----AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 K + + G I+P +L + +DLN A+ L + + + D P Sbjct: 282 DKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALSVLENMLSSTNEKLDQNP 338 >gi|262043517|ref|ZP_06016634.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039133|gb|EEW40287.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 296 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 157/293 (53%), Gaps = 32/293 (10%) Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 GTR+ +K++P DF+LWKR+ P EP W SPWG GRPGWHIECSAM+ HYLG FDIHG Sbjct: 2 GTRIEVNEYKRDPLDFVLWKRAKPGEPVWPSPWGEGRPGWHIECSAMNCHYLGTHFDIHG 61 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHHENEIAQS A+ N W+H G + + KMSKS NF T+ ++L Sbjct: 62 GGSDLIFPHHENEIAQSTSAND-GPYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDIL--N 118 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGII 347 +F +S +R +L HYR+P++++ + + A L++ S Sbjct: 119 RFDAQS-----VRFFLLSAHYRKPLNYSEENIHLARASLTRLYTACQFADGSRSEQHDAW 173 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTK----NHD----LLPIFNASAHILG-IEVCK 398 A+ +D NT A+ L +L RE + N D L ++LG +E Sbjct: 174 RARFCEAMDDDFNTPQALAILFELTREINRLCGTNDDEAAALATTLKDLGNVLGLLEQSA 233 Query: 399 EHLNKNIS-------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + KN S IEKL+ +R +M K+ AD +R +L +G LED Sbjct: 234 DAFLKNRSDLHPAELQLIEKLIHQRGEARRMGKWDKADRLRNELAEQGIDLED 286 >gi|119715257|ref|YP_922222.1| cysteine--tRNA ligase [Nocardioides sp. JS614] gi|119535918|gb|ABL80535.1| Cysteine--tRNA ligase [Nocardioides sp. JS614] Length = 390 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 114/356 (32%), Positives = 175/356 (49%), Gaps = 17/356 (4%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + R+YVCG T YD H+G+A + D+L +L + V+ RN+TD+DD ++E A Sbjct: 41 GSARVYVCGITPYDVTHLGHASTFVWADLLASVLDGTGVD--VSTCRNVTDVDDVLLEAA 98 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 R D +++ + F + L P HQPRA +++ ++ L Q ++ G Sbjct: 99 RLRGSHF---DELAVTQEAD---FDRSMRELRVATPAHQPRARHYVDAVVQLAQALLDAG 152 Query: 144 HAYEANNEIIFDTSSIPNYGSFSR-RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEP 202 AYE + + F + R R + + P + K + D +W+ S +P Sbjct: 153 AAYERDGTVWFRGRDVVARTGLERDRALALAEAYGDQPGEPAKDDSFDVAVWRPSADQQP 212 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W SPWG GRPGWH EC+AM+ G D+ GG DL+FPHH ++A + + A Sbjct: 213 AWASPWGWGRPGWHAECAAMALAVHGPSVDVLVGGDDLVFPHHAYQVAMAEAVSGVAPFA 272 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +H G + + G+KM+KS+GN + +++LLE P +RL +L Y EP DF Sbjct: 273 RAQLHVGEVRIGGQKMAKSSGNLVLVDDLLE-------HLPPAALRLHLLHRRYAEPWDF 325 Query: 323 TVQRLTEAEILLSKWPQTSTSKGIIDP-AVLSALYNDLNTVSAIQALHKLARESTK 377 +L EAE LL + G DP A L AL DL+ +A+ ES + Sbjct: 326 EAAQLAEAEQLLESLYAAAGRAGAGDPTAPLEALRTDLDVPTAVATALDQGGESAR 381 >gi|319949266|ref|ZP_08023346.1| cysteinyl-tRNA synthetase [Dietzia cinnamea P4] gi|319437056|gb|EFV92096.1| cysteinyl-tRNA synthetase [Dietzia cinnamea P4] Length = 399 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/413 (31%), Positives = 196/413 (47%), Gaps = 42/413 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+++T ++ E + P + MYVCG T YD H+G+A + FD++YR L E Sbjct: 1 MKLFDTAGGEVRE---VSPGPVAGMYVCGITPYDTTHLGHAATYLTFDLVYRQLLDAGHE 57 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTH 121 V YV+N TD+DD + ERA + D + + + T F +D L L P Sbjct: 58 --VHYVQNTTDVDDPLFERAER--------DGVDWRELGDRETDLFREDMEALRVLPPRD 107 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY------EANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 AT I +++ ++ ++ GHAY + +++ + + ++G S DE + Sbjct: 108 YVAATETIDEVVEMVGELLDRGHAYRIDPDVDGYSDVYYRHRATADFGYESGYDDDEMAV 167 Query: 176 G----TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 P++ K++P D +LW+ P EP W SPWG GRPGWHIECSA++ + LG F Sbjct: 168 AFAERGGDPDRPGKEHPLDALLWRVERPGEPSWPSPWGAGRPGWHIECSAIARNRLGMEF 227 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DI GGG DL FPHHE A + A A ++H + L+G KMSKS GN + + L Sbjct: 228 DIQGGGSDLAFPHHEFSAAHAEAAAGRRPFARFYVHAAMIGLDGVKMSKSLGNLVRVQAL 287 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV 351 + R +IRL + HYR ++ L A W + D A Sbjct: 288 RD------RGVDPALIRLGLFAGHYRVDRSWSDDLLERARTRYDLWCRVIARGVGADAAP 341 Query: 352 LSA-----LYNDLNTVSAIQALHKLARESTKNHDLLP-----IFNASAHILGI 394 + A L +DL+T A+ + A + D P I A +LGI Sbjct: 342 VIAELRERLADDLDTPGALAVVDAWASATLDGDDSDPSAGAGIATALDALLGI 394 >gi|239917682|ref|YP_002957240.1| cysteinyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|281413827|ref|ZP_06245569.1| cysteinyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|310947191|sp|C5CBT9|MSHC_MICLC RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|239838889|gb|ACS30686.1| cysteinyl-tRNA synthetase [Micrococcus luteus NCTC 2665] Length = 422 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 124/394 (31%), Positives = 193/394 (48%), Gaps = 44/394 (11%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++++T + T D +YVCG T YD H+G+A + FD+L+R R E Sbjct: 18 RLRLHDTATGR-TRHPGNDGRRASLYVCGITPYDATHLGHASTYVAFDLLHRYWRAAGLE 76 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD ++ERA + + T F D L LAP H Sbjct: 77 --VAYVQNVTDVDDPLLERAEA------TGVDWRALAEEQTDLFRADMAALEVLAPDHYV 128 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPN-----YGSFSRRKID 171 AT + ++ ++ ++ G AY E ++ FD S + G S +D Sbjct: 129 GATEAVGLVVDAVETMLAAGRAYRVPGGDGEPEGDVYFDVRSAQSATDWRLGQVSAMDLD 188 Query: 172 E------QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSS 224 E ++ G P++ K++P D +LW+ EP W+ G GRPGWHIECS +S Sbjct: 189 EMAAVFPERGGD--PDRPGKRDPLDPLLWRVHREGEPAWDGRSLGSGRPGWHIECSVISR 246 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +L F + GGG DL FPHHE A + D + A+ + H G + L+G KMSKS GN Sbjct: 247 AHLPAPFTVQGGGSDLRFPHHEFSAAHATAVDGL-PLAHTYAHTGMVALDGEKMSKSLGN 305 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------P 338 ++ L R +R A+L HYR +++ Q LT+A+ +++W P Sbjct: 306 LELVSRLR------ARGVEPVAVRAAILAHHYRSDWEWSEQVLTDAQARVTRWRAALDGP 359 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 + ++D AV +AL +DL+ A++AL A Sbjct: 360 HAAAGVAVLD-AVHAALSDDLDAPRALEALDAWA 392 >gi|331703852|ref|YP_004400539.1| Cysteinyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802407|emb|CBW54562.1| Cysteinyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 441 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 141/440 (32%), Positives = 212/440 (48%), Gaps = 41/440 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y CGPTVY++ HIGNARP+++ DVL R L+ V Y++NITDIDDKII +A Sbjct: 19 INLYCCGPTVYNYIHIGNARPVLLVDVLIRYLK--SRNIKVNYLQNITDIDDKIILKALD 76 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + +N+ ++ K T +++D L P + + +MI I+N++ A Sbjct: 77 NN----LNEL--EVSQKYTNAYLEDLKSLNINQPDKIILISQKMNEMIDFIKNLVDINAA 130 Query: 146 YEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 Y + ++ F+ N Y S K+DE G RV K DF LWK+ T + W Sbjct: 131 YVLDGDVYFNIKKYENEYCKLSGYKLDELISGKRVEIDSKKHYSLDFSLWKK-TDIGIKW 189 Query: 205 ESPWGRGRPGWHIECSAMSSHYLG-KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 S +G GRPGWH EC + Y + DIH GG+DL FPHHENE Q + E A+ Sbjct: 190 NSVFGLGRPGWHTECVLLIDEYFNHQTIDIHVGGIDLKFPHHENERIQFIAKNNKE-LAH 248 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 IW+HNG L + KMSKS GN I + + + + +R L T+Y +P++ Sbjct: 249 IWLHNGHLQINDEKMSKSLGNVILVRDFI-------KQHNKNTLRWIFLTTNYTQPLNIR 301 Query: 324 VQRLTEAEILLSKWPQTS--TSKGIID-----PAVLSALY---------NDLNTVSAIQA 367 + +A K S T + II ++ S+ Y +DLNT + Sbjct: 302 DDLIYQANKFFEKLTNLSKKTIQFIIKNDLKIKSINSSEYINKFNEYMEDDLNTSLVLSL 361 Query: 368 LHKLARE-----STKNHDLLPIFNASA-HILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 + L ++ KN D + S +IL + N ++L + L+K Sbjct: 362 IDSLIKQINKDIVDKNLDNFNLLIGSLDYILDVLGFDNVFNYKFDNKTKELFLKWQELVK 421 Query: 422 MKKFSSADYIRKQLESKGFI 441 K+F+ AD IR +L +G + Sbjct: 422 NKEFNKADIIRNKLIEQGIL 441 >gi|331697134|ref|YP_004333373.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Pseudonocardia dioxanivorans CB1190] gi|326951823|gb|AEA25520.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Pseudonocardia dioxanivorans CB1190] Length = 412 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/353 (32%), Positives = 182/353 (51%), Gaps = 31/353 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD++ R R + V YV+N+TDIDD ++ERA ++ Sbjct: 40 MYVCGITPYDATHLGHAATYLAFDLVNRYWRDLGHD--VHYVQNVTDIDDPLLERAARD- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 D ++ + T F +D L + P H A + ++ + ++ G AY Sbjct: 97 -----QDDWVVLGMRETALFREDMEALRVVPPRHYIGAVEAMGEIAEFVGKLLAGGSAYR 151 Query: 148 ANN----EIIFDTSSIPNYGSFSRRKIDEQKM------GTRVPEKYHKKNPADFILWKRS 197 ++ ++ FD+++ ++G S DEQ M P++ K++PAD +LW+ + Sbjct: 152 IDDPEFPDVYFDSTASGHFGYES--NYDEQTMIALSRERGGDPDRPGKRHPADALLWRMA 209 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP WES G GRPGWH+EC+A++ + LG D++GGG DLIFPHHE A + Sbjct: 210 REGEPSWESDLGAGRPGWHVECAAIALNRLGDQIDLNGGGSDLIFPHHEFGAAHAEAHTG 269 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 + A ++H G + L+G KMSKS GN + +++L +RLA+L HYR Sbjct: 270 VHPFARHYVHTGMIGLDGEKMSKSRGNLVFVSKLRADDV------DPNAVRLALLSGHYR 323 Query: 318 EPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-----LYNDLNTVSAI 365 +T L A+ L++W + T D A L +DL+T A+ Sbjct: 324 TDRAWTDDLLEAAQQRLARWREAVTLDAGPDATETVANLRAHLADDLDTPRAL 376 >gi|187631650|sp|Q4A786|SYC_MYCH7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|144575567|gb|AAZ54003.2| cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448] Length = 406 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 120/323 (37%), Positives = 178/323 (55%), Gaps = 27/323 (8%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 I+ N+ +Y+CGPTVY HIGN R +I+FD ++ L+ + ++ NITDIDDKII Sbjct: 6 INKKNLNIYLCGPTVYSDVHIGNLRTIIIFDAIFECLK--NKGFSINFLHNITDIDDKII 63 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 E+A++ + I++A +T K T ++ K PT R T I ++I I+ + Sbjct: 64 EKAQE----LGISEA--ELTEKYTNEYFKILEIFNIKKPTKIVRVTEKIEKIIEYIKLLE 117 Query: 141 LHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA--DFILWKRS 197 G Y NN+++FD IPNYG S +KI+ + +K KK + DF+LWK+ Sbjct: 118 KKGFTYYNKNNDLVFDILKIPNYGIISGQKIES------LLDKNTKKTKSNNDFVLWKK- 170 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 T ++S +G GRPGWH EC+A+ Y K D+HGGG+DLIFPHHENE AQ Sbjct: 171 TQKGLFFKSLFGLGRPGWHTECAALIYDYFQKKSLDLHGGGVDLIFPHHENENAQHFALT 230 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 A W +GF+NL G+KM+KS +N +L K F + P +IR L + Sbjct: 231 G-NPIAENWFRSGFVNLNGKKMAKS------LNNVLLAKDFSHKYNP-DIIRSIFLSINP 282 Query: 317 REPIDFTVQRLTEAEILLSKWPQ 339 PI+ T + + + L+ K+ + Sbjct: 283 TVPINLTEELIKNHKKLIEKYQK 305 >gi|296393640|ref|YP_003658524.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Segniliparus rotundus DSM 44985] gi|310947218|sp|D6ZFG9|MSHC_SEGRD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|296180787|gb|ADG97693.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Segniliparus rotundus DSM 44985] Length = 420 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 119/397 (29%), Positives = 200/397 (50%), Gaps = 41/397 (10%) Query: 4 KIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++++++ +R I + + P MYVCG T YD H+G+A + FD+++RL + Sbjct: 18 RLRLWDSADRII---RPVTPGRTATMYVCGITPYDATHLGHAATYLAFDLVHRL--WLDA 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y +NITD+DD ++ERA ++H + ++ + F D + L L P Sbjct: 73 GHQVAYAQNITDVDDPLLERADRDHRDW------QELAAEQIELFRTDMSALRVLPPHEY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAY---EANNEIIF-------DTSSIPNYGSFSRRKIDE 172 T + ++ +++ ++ + AY E ++ D + YG ++ Sbjct: 127 VGVTESVGLVVAMVEKLLANQSAYVVAEGEYPDVYHRIAATEDFGYVSGYGREEMAQVFR 186 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 ++ G P++ K +P D +LW+ + P EP W SP+G GRPGWH+ECSA++ +G FD Sbjct: 187 ERGGD--PDRPGKADPLDALLWRAARPGEPSWPSPFGPGRPGWHVECSAIALDRIGFGFD 244 Query: 233 IHGGGLDLIFPHHE------NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 + GGG DL+FPHHE + AD + A ++H G + L+G KMSKS GN + Sbjct: 245 VQGGGSDLVFPHHEFSAAHAQAQHGAGAADEHRRFARNYVHAGMIGLDGEKMSKSLGNLV 304 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-SKG 345 ++ L E R IRLA+ HYR + L EA+ L++W ++ + G Sbjct: 305 FVSALRE------RGVDPSAIRLALFAGHYRADRSWDQGLLREAQERLARWRHAASLASG 358 Query: 346 IIDPAVLSA----LYNDLNTVSAIQALHKLARESTKN 378 V++ L NDL+T A+ AL + E+ + Sbjct: 359 PAAHDVVARMREHLANDLDTPKALAALDSWSLEAAAH 395 >gi|15827673|ref|NP_301936.1| cysteinyl-tRNA synthetase [Mycobacterium leprae TN] gi|221230150|ref|YP_002503566.1| cysteinyl-tRNA synthetase [Mycobacterium leprae Br4923] gi|310947197|sp|B8ZRD9|MSHC_MYCLB RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|13093224|emb|CAC31683.1| cysteinyl-tRNA synthase [Mycobacterium leprae] gi|219933257|emb|CAR71397.1| cysteinyl-tRNA synthase [Mycobacterium leprae Br4923] Length = 384 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 189/388 (48%), Gaps = 35/388 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD+++RL E V YV+N+TD+DD + ERA + Sbjct: 13 MYVCGITPYDATHLGHAATYLAFDLIHRLWLDLGHE--VHYVQNVTDVDDPLFERADRN- 69 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + D + + F D L L P AT I +++ L+ +++ G AY Sbjct: 70 -GVDWRD----LAEREVALFRDDMASLRILPPHDYVAATETIVEIVELVDKMLVSGAAYV 124 Query: 148 ANNE---IIFDTSSIPNYGSFSRRKID------EQKMGTRVPEKYHKKNPADFILWKRST 198 ++E I F + +G S D EQ G P + K D +LW+ + Sbjct: 125 IDDEYPDIYFRADATLQFGYESGYDRDTMLRLYEQSGGD--PRRPGKNGELDALLWRAAR 182 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 P EP W SP+G GRPGWH+EC+A++ +G DI GGG DLIFPHHE A + C Sbjct: 183 PGEPSWSSPFGPGRPGWHVECAAIALSRIGIGLDIQGGGSDLIFPHHEFTAAHAECVRGE 242 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 + A ++H G + + KMSKS GN + ++ L P IRL +L HYR Sbjct: 243 RRFARHYVHAGMIGWDEHKMSKSRGNLVLVSTLRAQGA------PPSAIRLGLLAGHYRA 296 Query: 319 PIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-----VLSALYNDLNTVSAIQALHKLAR 373 ++ Q L +A L +W ++ D A V L +DL+T AI AL Sbjct: 297 DRFWSSQLLDDAIARLHRWRTAASMPAGPDVADVIARVRGYLADDLDTPKAIAALDGWVT 356 Query: 374 ESTK--NHD-LLPIFNASA--HILGIEV 396 ++ + HD P A+A +LG+++ Sbjct: 357 DALEYGGHDAAAPKLLATAIDALLGVDL 384 >gi|240171407|ref|ZP_04750066.1| cysteinyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478] Length = 383 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 128/393 (32%), Positives = 192/393 (48%), Gaps = 42/393 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD+++RL + V YV+N+TD+DD + ERA + Sbjct: 9 MYVCGITPYDATHLGHAATYLAFDLIHRL--WLDLGHDVQYVQNVTDVDDPLFERADR-- 64 Query: 88 PSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 D + + + + F D L L P AT + +M+ LI+ ++ G A Sbjct: 65 ------DGVDWRELADREVKLFRADMEALRVLPPHDYVAATEAVAEMVELIEKMLASGAA 118 Query: 146 YEANNEI------IFDTSSIPNYGSFSRRKID------EQKMGTRVPEKYHKKNPADFIL 193 Y + EI + + +G S D EQ+ G P + K + D +L Sbjct: 119 YTVDPEIGDYPDIYYRADATVQFGYESGCDRDTMLTLFEQRGGD--PSRPGKTDQLDALL 176 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ + EP W SP+G GRPGWH+EC+A++ + DI GGG DLIFPHHE A + Sbjct: 177 WRAARAGEPSWPSPFGPGRPGWHVECAAIALSRINSGLDIQGGGSDLIFPHHEFTAAHAE 236 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 C + A ++H G + +G KMSKS GN + ++ L + +RL +L Sbjct: 237 CVTGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSTLR------AQGVEPSAVRLGLLA 290 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-----LYNDLNTVSAIQAL 368 HYRE +T Q L EA L +W + D A + A L +DL+T AI AL Sbjct: 291 GHYREDRFWTHQVLDEAAGRLQRWRTATALPAGPDAADVIARVRRYLADDLDTPKAIAAL 350 Query: 369 HKLARESTK--NHD-LLPIFNASA--HILGIEV 396 A ++ + HD P A+A +LG+++ Sbjct: 351 DGWATDALEYGGHDESAPTSVATAIDALLGVDL 383 >gi|72080968|ref|YP_288026.1| cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448] Length = 401 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 119/323 (36%), Positives = 178/323 (55%), Gaps = 27/323 (8%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 ++ N+ +Y+CGPTVY HIGN R +I+FD ++ L+ + ++ NITDIDDKII Sbjct: 1 MNKKNLNIYLCGPTVYSDVHIGNLRTIIIFDAIFECLK--NKGFSINFLHNITDIDDKII 58 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 E+A++ + I++A +T K T ++ K PT R T I ++I I+ + Sbjct: 59 EKAQE----LGISEA--ELTEKYTNEYFKILEIFNIKKPTKIVRVTEKIEKIIEYIKLLE 112 Query: 141 LHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA--DFILWKRS 197 G Y NN+++FD IPNYG S +KI+ + +K KK + DF+LWK+ Sbjct: 113 KKGFTYYNKNNDLVFDILKIPNYGIISGQKIES------LLDKNTKKTKSNNDFVLWKK- 165 Query: 198 TPMEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 T ++S +G GRPGWH EC+A+ Y K D+HGGG+DLIFPHHENE AQ Sbjct: 166 TQKGLFFKSLFGLGRPGWHTECAALIYDYFQKKSLDLHGGGVDLIFPHHENENAQHFALT 225 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 A W +GF+NL G+KM+KS +N +L K F + P +IR L + Sbjct: 226 G-NPIAENWFRSGFVNLNGKKMAKS------LNNVLLAKDFSHKYNP-DIIRSIFLSINP 277 Query: 317 REPIDFTVQRLTEAEILLSKWPQ 339 PI+ T + + + L+ K+ + Sbjct: 278 TVPINLTEELIKNHKKLIEKYQK 300 >gi|50550761|ref|XP_502853.1| YALI0D15268p [Yarrowia lipolytica] gi|49648721|emb|CAG81041.1| YALI0D15268p [Yarrowia lipolytica] Length = 743 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 146/243 (60%), Gaps = 18/243 (7%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF 165 +F KD +L LAP+ R + ++P+++ ++ II +G+AY +++ + FDT++ + Sbjct: 224 EFDKDMAKLNVLAPSVTTRVSEYVPEIVEYVEKIIDNGYAYVSDSGVYFDTAAFDKSHDY 283 Query: 166 SRRK---------IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 ++ + IDE + + K K+N +DF LWK S P EP W+SPWG+GRPGWH Sbjct: 284 AKLQPWNKGHADLIDEGE--GSLSNKTGKRNSSDFALWKASKPGEPFWDSPWGQGRPGWH 341 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L++EG+ Sbjct: 342 IECSVMASAILGPQMDIHSGGIDLAFPHHDNELAQSEAHYDCKQWVNYFLHTGHLHIEGQ 401 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 KMSKS NFITI+E L+T + +RLA + + +DF ++E + + S Sbjct: 402 KMSKSLKNFITIDEALQT-------YSPRQLRLAFALQQWNNQLDFKSALISEVKSVEST 454 Query: 337 WPQ 339 + + Sbjct: 455 FSK 457 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +K+YN+L R T F I + + Y CGPTVYD +H+G+AR + D+ R+L+ Y+ Sbjct: 20 RDTLKLYNSLTRSKTAFVPIAGNKVTWYCCGPTVYDSSHMGHARNYVSTDINRRILQDYF 79 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G V +V+N+TDIDDKII R RQ+H Sbjct: 80 GYD-VLFVQNVTDIDDKIIIRGRQQH 104 >gi|67468752|ref|XP_650386.1| cysteinyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS] gi|56467004|gb|EAL45000.1| cysteinyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS] Length = 701 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 152/284 (53%), Gaps = 11/284 (3%) Query: 50 FDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE-RARQEHPSIPINDAISIITSKNTQQFV 108 ++ ++ L + G+ +TD+ K ++ R ++ I + +A I K + F Sbjct: 139 YEKVFPTLDSFNGQNTAEVFARMTDVIGKYLDVRQKETVDPIEMKEAARIHARKYEELFF 198 Query: 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR 168 D L P R T IP++I IQ II +G+AYE+N + FDT+S G + Sbjct: 199 ADCDALGIRRPDVISRVTEFIPEVIAFIQKIIDNGYAYESNGSVYFDTASFRKAG-MTYG 257 Query: 169 KIDEQKMG-TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 +++ +G P K N DF LWK+S EP WES WG GRPGWHIECSAM+S+ Sbjct: 258 RLEPWSVGDVDAPADGEKHNKNDFALWKKSKAGEPSWESQWGPGRPGWHIECSAMASNVF 317 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 G DIH GG DL FPHHENE+AQS ++ E ++H G L++ G KMSKS NFI Sbjct: 318 GDTLDIHSGGEDLKFPHHENELAQSEAYFNKKESWVRYFLHTGHLHINGLKMSKSLKNFI 377 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 TI + LE K+ R +R+ LM + I+F+ L EA Sbjct: 378 TIKQALE--KYSARQ-----LRILFLMQSWDAVINFSDSALDEA 414 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 4/86 (4%) Query: 1 MKKKIKIYNTLERK-ITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 M + +K++NTL+R + F P IR Y CGPTVYD +H+G+AR + D+ R+L Sbjct: 1 MTETLKVHNTLKRDGLDNFVCNGP--IRWYCCGPTVYDDSHLGHARTYLSTDIFRRILED 58 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQ 85 Y+G + + + NITD+DDKII +AR+ Sbjct: 59 YFGYQVIQCM-NITDVDDKIILKARK 83 >gi|111222276|ref|YP_713070.1| cysteinyl-tRNA synthetase [Frankia alni ACN14a] gi|123338663|sp|Q0RLV2|MSHC_FRAAA RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|111149808|emb|CAJ61502.1| Cysteinyl-tRNA synthetase 2 (Cysteine--tRNA ligase 2) [Frankia alni ACN14a] Length = 413 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 188/363 (51%), Gaps = 34/363 (9%) Query: 18 FQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID 76 +A+D + +YVCG T YD H+G+A + +D+ R+LR G K V YV+N+TD+D Sbjct: 1 MRALDSAPTAHLYVCGITPYDATHLGHAFTYLTYDLAQRVLRDS-GHK-VLYVQNVTDVD 58 Query: 77 DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLI 136 D ++ERA ++ + D + ++ F +D T L LAP IP ++ ++ Sbjct: 59 DPLLERADRD--GLDWRD----LAAREIALFREDMTALRMLAPDSYVGVVEAIPMIVDMV 112 Query: 137 QNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK------IDEQKMGTRVPEKYHKKNPAD 190 ++ G AY ++++ F ++ P +G S I ++ G P + KK+P D Sbjct: 113 AELVDRGAAYHVDDDLYFSVAAAPAFGEISHLSRAEMLAICAERGGD--PGRGGKKDPLD 170 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 +LW+ P EP W SP+G GRPGWHIECSA++ H+LG V D+ GGG DL FPHHE A Sbjct: 171 PLLWRARRPGEPSWPSPFGPGRPGWHIECSAIARHHLGGVVDLQGGGTDLSFPHHECSAA 230 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 + A A ++H ++L+G KMSKS GN ++ L R + L Sbjct: 231 HAEVAAGARPFARSYVHTAMVSLDGHKMSKSRGNLEFVSRL--------RRAGTDLAALR 282 Query: 311 MLMTHYREPID--FTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTV 362 + + +R D ++ LT+A + +W P ++G++ AV L +DL+ Sbjct: 283 LALLDHRHTADWEWSASLLTDAVARVGRWRAAVALPAGPDAQGVL-AAVRERLADDLDAP 341 Query: 363 SAI 365 A+ Sbjct: 342 GAL 344 >gi|90077312|dbj|BAE88336.1| unnamed protein product [Macaca fascicularis] Length = 451 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/267 (40%), Positives = 149/267 (55%), Gaps = 21/267 (7%) Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 V ITD+DDKII+RA + +N + + + S + F +D L L PT R T + Sbjct: 2 VMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYLRVTEN 55 Query: 129 IPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKK 186 IPQ+I I+ II GHAY A + FD S + YG + +G P K+ Sbjct: 56 IPQIISFIEGIIARGHAYSTAKGNVYFDLKSRGDKYGKLV--GVVPGPVGE--PADSDKR 111 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 + +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL FPHHE Sbjct: 112 HASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLAFPHHE 171 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWPA 304 NEIAQ + E+ N ++H+G L+++G+ KMSKS N+ITI + L+T + Sbjct: 172 NEIAQCEVFHQCEQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLKT-------FSP 224 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE 331 V R L + YR ID++ + A+ Sbjct: 225 DVFRFFCLRSSYRSAIDYSDSAMLHAQ 251 >gi|284991120|ref|YP_003409674.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Geodermatophilus obscurus DSM 43160] gi|310947184|sp|D2S6C9|MSHC_GEOOG RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|284064365|gb|ADB75303.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Geodermatophilus obscurus DSM 43160] Length = 422 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/400 (31%), Positives = 191/400 (47%), Gaps = 43/400 (10%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + RMYVCG T YD H+G+A + FD++ R+ R V YV+N+TDIDD ++ERA Sbjct: 36 TTARMYVCGITPYDATHLGHAATYLAFDLVNRVWRD--AGHAVHYVQNVTDIDDPLLERA 93 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 ++ + ++ + T F +D T L L P A +P+++ ++ ++ G Sbjct: 94 ERD------GEDWVVLGMRETALFREDMTALRVLPPDDYVGAVESVPRIVAHVETLLDEG 147 Query: 144 HAY---EANNEIIFDTSSIPNYGSFSRRKIDEQKM------GTRVPEKYHKKNPADFILW 194 AY + ++ D + P +GS S DE M P++ K+N D +LW Sbjct: 148 LAYVLDDGTGDVYHDIAQAPGFGSES--GYDEATMLRFSAERGGDPDRPGKRNRLDPMLW 205 Query: 195 KRSTPMEPGWESPWG-RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE-----NE 248 + P EP W P G GRPGWHIEC+ ++ +G FD+ GGG DL+FPHHE E Sbjct: 206 RGRRPGEPSWPGPRGVAGRPGWHIECATIALETIGMGFDVQGGGSDLVFPHHEFSAVHAE 265 Query: 249 IAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 + A ++H + L+G KMSKS GN + ++ K G IR Sbjct: 266 ALTATVTGEKLPFARAYVHAAMIGLDGEKMSKSRGNLVFVS------KLRGEGVDPMAIR 319 Query: 309 LAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-SKGIIDPAVLSA----LYNDLNTVS 363 LA+L HYR +T L AE L+ W + T G VL L +DL++ Sbjct: 320 LALLAGHYRTDRAWTPDLLAGAEQRLATWRRAVTRDAGAPAAEVLQGLRERLADDLDSPG 379 Query: 364 AIQ-----ALHKLARESTKNHDLLP--IFNASAHILGIEV 396 AI A LA + + + P + +A +LG+ + Sbjct: 380 AIALVDAWAERTLAATADEQEEGAPTIVCDAVDALLGVAL 419 >gi|256394535|ref|YP_003116099.1| cysteinyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] gi|310947176|sp|C7Q9B2|MSHC_CATAD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|256360761|gb|ACU74258.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Catenulispora acidiphila DSM 44928] Length = 427 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 191/384 (49%), Gaps = 33/384 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++++T + + A P R+YVCG T YD H+G+A + FD++ R + Sbjct: 17 SAVRLHDTAAQGLVPTPAAAPGEAARIYVCGITPYDATHMGHANTYLTFDLIQRA--WLD 74 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V+YV+N+TD+DD ++ERA + T F +D T L L P H Sbjct: 75 AGHPVSYVQNVTDVDDPLLERAAA------TGRDWEALAESETALFREDMTALRILPPQH 128 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ--KMGTRV 179 A IP ++ L+ ++ G AY+ + ++ F + P +G+ + E G R Sbjct: 129 YVGAVESIPLVVDLVVKLLERGAAYDVDGDVYFSVHADPAFGAVAHLDAPEMLTTFGERG 188 Query: 180 --PEKYHKKNPADFILWKRSTPMEPGWE-------SPWGRGRPGWHIECSAMSSHYLGKV 230 P + KK+P D +LW+ EP WE + GRPGWHIEC+A++ +LG Sbjct: 189 GDPGRPGKKDPLDCLLWQAEREGEPSWEPGEQARAAGLKPGRPGWHIECAAIALEHLGMG 248 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 D+ GGG DL FPHHE +++ A+ ++H+G + L+G KMSKS GN + +++ Sbjct: 249 IDLQGGGSDLAFPHHEMGASEAQVVTGQRPYAHSYVHSGMVGLDGEKMSKSKGNLVLVSK 308 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------PQTSTSK 344 L + G A IRLA+L HYR ++T L A L++W P + Sbjct: 309 L----RHAGVDPMA--IRLALLAHHYRTDWEWTDADLVSAVARLARWRAAVSRPDGVPAD 362 Query: 345 GIIDPAVLSALYNDLNTVSAIQAL 368 ++D AV + + +DL+ A+ + Sbjct: 363 DVLD-AVRARIADDLDAPGALAVI 385 >gi|320165586|gb|EFW42485.1| cysteinyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864] Length = 727 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 135/238 (56%), Gaps = 19/238 (7%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGS 164 +QF D L L P R +++I ++I ++ +I +G+AY +N + F T+S Sbjct: 202 EQFNIDMKALHILEPDRLTRVSDYIDEIIEFVEKVIGNGYAYASNGSVYFSTTSFDQNKG 261 Query: 165 FSRRKIDEQKMG------------TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 K+ + +G + KK+P DF LWK+S EP W+SPWG+GR Sbjct: 262 HHYAKLVPEAVGNAASLAEGEGELSATDAGSDKKHPNDFALWKKSKAGEPAWDSPWGKGR 321 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ +G DIHGGG+DL FPHH+NEIAQS ++ N ++H G L Sbjct: 322 PGWHIECSAMAGKVIGSTLDIHGGGIDLKFPHHDNEIAQSEAFFDNKQWINYFMHTGHLA 381 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 +EGRKMSKS NFITI E LE ++ A IR+ L+ + + +D++ +TEA Sbjct: 382 IEGRKMSKSLKNFITIREALE-------AYTARQIRIMFLLHAWNKGLDYSKSTMTEA 432 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 60/87 (68%), Gaps = 1/87 (1%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 ++ ++++N+L R++ EF + + + Y+CGPTVYD +H+G+A I FDV+ R+L Y Sbjct: 18 VRTGLRLHNSLTREVDEFIPANGNTVNAYICGPTVYDASHMGHASTYIQFDVIRRVLADY 77 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEH 87 + + +V NITD+DDKII +AR+ H Sbjct: 78 F-HYDMRWVMNITDVDDKIILKARRNH 103 >gi|319442059|ref|ZP_07991215.1| cysteinyl-tRNA synthetase [Corynebacterium variabile DSM 44702] Length = 430 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 112/356 (31%), Positives = 180/356 (50%), Gaps = 34/356 (9%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + +YVCG T YD H+G+A + FD+++R L G + V +V NITD+DD + ERA Sbjct: 39 GEVGIYVCGITPYDSTHLGHAATYVTFDLVHRAL-LDNGHR-VHFVENITDVDDPLFERA 96 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 E + D + + F D L+ + P A + ++I L+ ++ G Sbjct: 97 --ERDGVDWRD----LGTSQIDLFRSDMEALSVIPPREYIGAMESVDEVIDLVSRLLEVG 150 Query: 144 HAYEANNE----IIFDTSSIPNYGSFSRRKIDE------QKMGTRVPEKYHKKNPADFIL 193 AY + + I D + +G SR DE ++ G P++ K+ P D ++ Sbjct: 151 AAYRLDGDEFPDIYVDHTFTEQFGYESRYTADEMAEFFAERGGD--PDRAGKRYPLDALV 208 Query: 194 WKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 W+ EP W++P+G GRPGWH+ECSA++++ LG F + GGG DL FPHHE A + Sbjct: 209 WRARRDGEPSWDAPFGAGRPGWHVECSAIATNRLGASFAVQGGGSDLRFPHHEFSAAHAE 268 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 A ++ A+ ++H G + L+G KMSKS GN + +++L A +RL + Sbjct: 269 AAHGCDRMADHYVHTGMIGLDGVKMSKSLGNLVFVSKLTADGH------DASAVRLGLYE 322 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------IDPAVLSALYNDLNT 361 HYR D++ L AE L++W + + + V +AL +DL+T Sbjct: 323 QHYRADRDWSDAVLARAEDRLARWRAAAQTAASRPASAAAQLVADVRAALSDDLDT 378 >gi|187631651|sp|Q4A947|SYC_MYCHJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|144227739|gb|AAZ44724.2| cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae J] Length = 406 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 23/321 (7%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 I+ N+ +Y+CGPTVY HIGN R +I+FD ++ L+ + ++ NITDIDDKII Sbjct: 6 INKKNLNIYLCGPTVYSDVHIGNLRTIIIFDAIFECLK--NKGFSINFLHNITDIDDKII 63 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 E+A++ + I++A +T K T ++ K PT + T I ++I I+ + Sbjct: 64 EKAQE----LGISEA--ELTEKYTNEYFKILEIFNIKKPTKIVKVTEKIEKIIEYIKLLE 117 Query: 141 LHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 G Y NN+++FD IPNYG S +KI+ K+ DF+LWK+ T Sbjct: 118 KKGFTYYNKNNDLVFDILKIPNYGIISGQKIE----SLLDKNTKKTKSKNDFVLWKK-TQ 172 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 ++S +G GRPGWH EC+A+ Y K D+HGGG+DLIFPHHENE AQ Sbjct: 173 KGLFFKSLFGLGRPGWHTECAALIYDYFQKKSLDLHGGGVDLIFPHHENENAQHFALTG- 231 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 A W +GF+NL G+KM+KS +N +L K F + P +IR L + Sbjct: 232 NPIAENWFRSGFVNLNGKKMAKS------LNNVLLAKNFSHKYNP-DIIRSIFLSINPTV 284 Query: 319 PIDFTVQRLTEAEILLSKWPQ 339 PI+ T + + + L+ K+ + Sbjct: 285 PINLTEELIKNHKKLIEKYQK 305 >gi|281205872|gb|EFA80061.1| cysteinyl-tRNA synthetase [Polysphondylium pallidum PN500] Length = 837 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 132/419 (31%), Positives = 190/419 (45%), Gaps = 87/419 (20%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I Y CGPTVYD AH+G+AR + D++ R+L Y+ + +V +TD+DDKII+ + Sbjct: 83 ISWYTCGPTVYDSAHLGHARAYVSIDIVQRVLTDYFNLN-INHVMGMTDVDDKIIKMSAT 141 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + S + + +F++D L P R + HIP +I ++ I +G+A Sbjct: 142 KGMSF------KELARQKELEFIQDMDSLNVRPPLLITRVSEHIPNIINFVKQIRENGYA 195 Query: 146 YEAN------NEIIFDTSSIPNYGSFSRR--KIDEQKMGTRVPEKYH-----KKNPADFI 192 Y+ + ++FDT G F R K++++ G + E K DF Sbjct: 196 YDVDIPGSTGQSVLFDT------GKFGTRYGKLEKENQGAQADENLAIQSDVKLGTRDFA 249 Query: 193 LWKRSTPMEPG--------WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 LWK + P+ W SP+G GRPGWHIECS+M G D+H GG+DL FPH Sbjct: 250 LWKSANPITDVDGQGKLVVWNSPFGDGRPGWHIECSSMIHSIFGDKLDVHAGGIDLKFPH 309 Query: 245 HENEIAQSCCA----------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 HENEIAQ C A ++ N ++H G LN++G KMSKS NFITI E L Sbjct: 310 HENEIAQ-CEAHFSPHPNPATGEYKQWVNYFMHIGHLNIKGLKMSKSLKNFITIREYLAK 368 Query: 295 KKFGGRSWPAPVIR-------------------------LAMLMTHYREPIDFTVQRLTE 329 W R M+ EPI+ + R + Sbjct: 369 NTATSFRWLCLTNRYFDTINYNPKSDEQYQNSLQRFIDWFNMVEMRMMEPININLTRASY 428 Query: 330 AEILLSKWPQTSTSKGIIDPAVLS------ALYNDLNTVSAIQALHKLARESTKNHDLL 382 + +K IID LS AL +D NT AI+ + L +E+ N+ L Sbjct: 429 QQ-----------AKPIIDLFNLSKNDIHLALTDDFNTPKAIKIMQLLVKETMMNNTQL 476 >gi|145594700|ref|YP_001158997.1| cysteinyl-tRNA synthetase [Salinispora tropica CNB-440] gi|310947216|sp|A4X6W9|MSHC_SALTO RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|145304037|gb|ABP54619.1| cysteinyl-tRNA synthetase [Salinispora tropica CNB-440] Length = 404 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 115/353 (32%), Positives = 181/353 (51%), Gaps = 31/353 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A MI FD++ R+ R + VTYV+N+TDIDD ++ERA ++ Sbjct: 32 MYVCGITPYDATHLGHAATMITFDLIQRVWRDAGLD--VTYVQNVTDIDDPLLERAARD- 88 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + ++ + T F +D L + P H A IP + + ++ G AY Sbjct: 89 -----GEDWKVLAMRETALFREDMEALRIIPPEHYVGAVESIPDIAERVLMLVKEGAAYR 143 Query: 147 --EANNEIIFDTSSIPNYG---SFSRRKIDE---QKMGTRVPEKYHKKNPADFILWKRST 198 + ++ FD S+ P +G SR ++ E ++ G P++ K++P D +LW+ + Sbjct: 144 LEDGTGDVYFDISATPRFGYESHLSREQMLEIFPERGGD--PDRAGKRDPLDPLLWRGAR 201 Query: 199 PMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W G GRPGWHIEC+ ++ + LG D+ GGG DLIFPHHE A + Sbjct: 202 ADEPSWPGGDLGPGRPGWHIECAVIALNLLGAQIDVQGGGNDLIFPHHECSAAHAELLTG 261 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A ++H G + L+G KMSKS GN + ++ L + +RLA++ HY Sbjct: 262 QTPFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRADQV------DPMAVRLALMSGHYH 315 Query: 318 EPIDFTVQRLTEAEILLSKWPQTSTSK-GIIDPAVLSA----LYNDLNTVSAI 365 + + L A+ L +W + + G A L+A L +DL++ A+ Sbjct: 316 SDRSWNDELLATAQKRLGRWRKAAAMPCGPSAEAFLAALRGRLADDLDSPGAL 368 >gi|312601583|gb|ADQ90838.1| Cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae 168] Length = 404 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 23/321 (7%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 I+ N+ +Y+CGPTVY HIGN R +I+FD ++ L+ + ++ NITDIDDKII Sbjct: 4 INKKNLNIYLCGPTVYSDVHIGNLRTIIIFDAIFECLK--NKGFSINFLHNITDIDDKII 61 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 E+A++ + I++A +T K T ++ K PT + T I ++I I+ + Sbjct: 62 EKAQE----LGISEA--ELTEKYTNEYFKILEIFNIKKPTKIVKVTEKIEKIIEYIKLLE 115 Query: 141 LHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 G Y NN+++FD IPNYG S +KI+ K+ DF+LWK+ T Sbjct: 116 KKGFTYYNKNNDLVFDILKIPNYGIISGQKIE----SLLDKNTKKTKSKKDFVLWKK-TQ 170 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 ++S +G GRPGWH EC+A+ Y K D+HGGG+DLIFPHHENE AQ Sbjct: 171 KGLFFKSFFGLGRPGWHTECAALIYDYFQKKSLDLHGGGVDLIFPHHENENAQHFALTG- 229 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 A W +GF+NL G+KM+KS +N +L K F + P +IR L + Sbjct: 230 NPIAENWFRSGFVNLNGKKMAKS------LNNVLLAKDFSHKYNP-DIIRSIFLSINPTV 282 Query: 319 PIDFTVQRLTEAEILLSKWPQ 339 PI+ T + + + L+ K+ + Sbjct: 283 PINLTEELIKNHKKLIEKYQK 303 >gi|54020642|ref|YP_116169.1| cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae 232] gi|61216154|sp|Q5ZZP6|SYC_MYCH2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53987815|gb|AAV28016.1| cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae 232] Length = 404 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 23/321 (7%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 I+ N+ +Y+CGPTVY HIGN R +I+FD ++ L+ + ++ NITDIDDKII Sbjct: 4 INKKNLNIYLCGPTVYSDVHIGNLRTIIIFDAIFECLK--NKGFSINFLHNITDIDDKII 61 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 E+A++ + I++A +T K T ++ K PT + T I ++I I+ + Sbjct: 62 EKAQE----LGISEA--ELTEKYTNEYFKILEIFNIKKPTKIVKVTEKIEKIIEYIKLLE 115 Query: 141 LHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 G Y NN+++FD IPNYG S +KI+ K+ DF+LWK+ T Sbjct: 116 KKGFTYYNKNNDLVFDILKIPNYGIISGQKIE----SLLDKNTKKTKSKNDFVLWKK-TQ 170 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 ++S +G GRPGWH EC+A+ Y K D+HGGG+DLIFPHHENE AQ Sbjct: 171 KGLFFKSFFGLGRPGWHTECAALIYDYFQKKSLDLHGGGVDLIFPHHENENAQHFALTG- 229 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 A W +GF+NL G+KM+KS +N +L K F + P +IR L + Sbjct: 230 NPIAENWFRSGFVNLNGKKMAKS------LNNVLLAKDFSHKYNP-DIIRSIFLSINPTV 282 Query: 319 PIDFTVQRLTEAEILLSKWPQ 339 PI+ T + + + L+ K+ + Sbjct: 283 PINLTEELIKNHKKLIEKYQK 303 >gi|260948980|ref|XP_002618787.1| hypothetical protein CLUG_02246 [Clavispora lusitaniae ATCC 42720] gi|238848659|gb|EEQ38123.1| hypothetical protein CLUG_02246 [Clavispora lusitaniae ATCC 42720] Length = 762 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/276 (38%), Positives = 152/276 (55%), Gaps = 26/276 (9%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPN---- 161 F +D +L L PT R + ++P++I + II +G AY A+ + FDT+ N Sbjct: 235 FNEDMAKLNVLPPTVTTRVSEYVPEIIDFVDKIISNGFAYVTADGSVYFDTAKFENDPNH 294 Query: 162 -------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 + S I++ + V E KKNPADF LWK S P EP W+S WG GRPG Sbjct: 295 DYAKLQPWNKGSMSLINDGEGSLSVSESIIKKNPADFSLWKASKPGEPAWDSKWGPGRPG 354 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++HNG L+++ Sbjct: 355 WHIECSVMASDILGSTIDIHSGGIDLCFPHHDNELAQSEAYFDNKQWINYFMHNGHLHIQ 414 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 G+KMSKS NFITI E L+ ++ + +RL ++ +PIDF + E + Sbjct: 415 GQKMSKSLKNFITIEEALQ-------NYTSRQLRLIFAFGNWDKPIDFKDSLVHEVKAY- 466 Query: 335 SKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHK 370 ++S SK L+ Y ++VS+ QA+ K Sbjct: 467 ----ESSLSKFFTTVRALNTDYK--HSVSSGQAISK 496 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R +F + I Y CGPTVY++AH+G+AR + D+ R+L+ Y+G Sbjct: 31 LKIYNSLTRAKEDFVPQKFNYITWYCCGPTVYNYAHMGHARNYVCSDICRRILQDYFGYN 90 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + +V+N+TDIDDKII ARQ++ Sbjct: 91 -INFVQNVTDIDDKIIISARQQY 112 >gi|303286934|ref|XP_003062756.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455392|gb|EEH52695.1| predicted protein [Micromonas pusilla CCMP1545] Length = 724 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 135/247 (54%), Gaps = 19/247 (7%) Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 S I DA + + +F+ D L + P R + ++ +++ IQ I+ G AYE+ Sbjct: 160 SWSIQDAYLTLAKRFEDEFMGDMASLNVMRPDALTRVSEYVDKIVSYIQRIVDRGFAYES 219 Query: 149 NNEIIFDTSSIPN-----YGSFSRRKIDEQKM-------GTRVPEKYHKKNPADFILWKR 196 N + FD + Y ++ + E ++ G + KK+ DF+LWK Sbjct: 220 NGSVYFDVPTFEKDANHKYAKLNKAALAEDEVEAAMDGEGALAADASEKKDAHDFVLWKA 279 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 S P EP W SPWG GRPGWHIECSAM S LG+ DI+GGG+DL FPHHEN++AQS Sbjct: 280 SKPGEPSWASPWGEGRPGWHIECSAMCSDVLGEAVDINGGGIDLNFPHHENQLAQSEAFY 339 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 +++ N ++H+G L+++G KMSKS NFITI L + + A +R L+ + Sbjct: 340 DVKQWVNYFVHSGHLHIDGLKMSKSLKNFITIRAAL-------KMYTARQLRFLFLLHQW 392 Query: 317 REPIDFT 323 +P+D T Sbjct: 393 SDPMDLT 399 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 ++ NT + T F +D + + Y+CGPTVYD AH+G+AR + FDVL R++ Y+ Sbjct: 11 RLMNTFTKTKTPFVPLDGNRVGWYICGPTVYDSAHMGHARNYVNFDVLRRVVTEYF-RYD 69 Query: 66 VTYVRNITDIDDKIIERARQ 85 V +V N+TDIDDKI+ RA Q Sbjct: 70 VRFVMNVTDIDDKIVMRAHQ 89 >gi|71893989|ref|YP_279435.1| cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae J] Length = 401 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/321 (36%), Positives = 174/321 (54%), Gaps = 23/321 (7%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 ++ N+ +Y+CGPTVY HIGN R +I+FD ++ L+ + ++ NITDIDDKII Sbjct: 1 MNKKNLNIYLCGPTVYSDVHIGNLRTIIIFDAIFECLK--NKGFSINFLHNITDIDDKII 58 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 E+A++ + I++A +T K T ++ K PT + T I ++I I+ + Sbjct: 59 EKAQE----LGISEA--ELTEKYTNEYFKILEIFNIKKPTKIVKVTEKIEKIIEYIKLLE 112 Query: 141 LHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 G Y NN+++FD IPNYG S +KI+ K+ DF+LWK+ T Sbjct: 113 KKGFTYYNKNNDLVFDILKIPNYGIISGQKIE----SLLDKNTKKTKSKNDFVLWKK-TQ 167 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 ++S +G GRPGWH EC+A+ Y K D+HGGG+DLIFPHHENE AQ Sbjct: 168 KGLFFKSLFGLGRPGWHTECAALIYDYFQKKSLDLHGGGVDLIFPHHENENAQHFALTG- 226 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 A W +GF+NL G+KM+KS +N +L K F + P +IR L + Sbjct: 227 NPIAENWFRSGFVNLNGKKMAKS------LNNVLLAKNFSHKYNP-DIIRSIFLSINPTV 279 Query: 319 PIDFTVQRLTEAEILLSKWPQ 339 PI+ T + + + L+ K+ + Sbjct: 280 PINLTEELIKNHKKLIEKYQK 300 >gi|331698452|ref|YP_004334691.1| Cysteine--tRNA ligase [Pseudonocardia dioxanivorans CB1190] gi|326953141|gb|AEA26838.1| Cysteine--tRNA ligase [Pseudonocardia dioxanivorans CB1190] Length = 365 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 166/343 (48%), Gaps = 19/343 (5%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 RMYVCG T YD H+G+A + DV R+LR+ + V RN+TD+DD + + Sbjct: 16 RMYVCGITPYDTTHLGHAATFVWADVAARVLRHVGVD--VDVCRNVTDVDDVL------D 67 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + +F +D L PT++PRA H+ Q++ L + ++ G AY Sbjct: 68 AAAARAGARYDSFAAVQQFRFERDMAALGVRRPTYEPRAHVHVAQVVELAEALLERGAAY 127 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 + + F + + + + + +PAD ++W+ + EP W S Sbjct: 128 HRDGTVWFRGAGVRERAGLAADEAAALADEFGDRRDDGRDDPADVVIWRVAGHGEPAWPS 187 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWH EC+AMS LG D+H GG DL +PHH E A + + A W+ Sbjct: 188 PWGEGRPGWHAECAAMSLTTLGPALDLHVGGADLRYPHHAYEAAMAEAVTGVTPFARAWL 247 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H G + ++GRKM+KS GN + ++++L + PA +RL ++ + + D+ + Sbjct: 248 HVGTVRIDGRKMAKSAGNLVLVSDVLADR-------PAAALRLLLVDRPWAQTWDYRDED 300 Query: 327 L----TEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAI 365 L T E L + T + V +AL +DL+ A+ Sbjct: 301 LRAAETRLEALYAAASHGVTENPVASAEVTAALLDDLDVPRAL 343 >gi|294811722|ref|ZP_06770365.1| cysteinyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|326440529|ref|ZP_08215263.1| cysteinyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|294324321|gb|EFG05964.1| cysteinyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] Length = 409 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/318 (34%), Positives = 170/318 (53%), Gaps = 23/318 (7%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T YD H+G+A FD++ R+ + ++ V YV+N+TD+DD ++ERA ++ Sbjct: 39 RIYVCGITPYDATHLGHAATYNAFDLVQRV--WLDTKRQVHYVQNVTDVDDPLLERALRD 96 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + + + T F +D T L L P H A IP+++ L++ ++ G AY Sbjct: 97 ------GEDWTRLAERETALFREDMTALRMLPPKHYIGAVEAIPRIVPLVERLLGAGAAY 150 Query: 147 EANNEIIFDTSSIPNYGSFSR------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 E + +I F S P++G S R + ++ G PE+ KKNP D +LW + Sbjct: 151 ELDGDIYFSVESDPHFGEVSHLDAAAMRLLSAERGGD--PERPGKKNPLDPMLWLAARSG 208 Query: 201 EPGWESPWGRGRPG-WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+ WHIEC A++ +LG FD+ GGG DL+FPHHE + + Sbjct: 209 EPSWDGGGLGPGRPGWHIECVAIALDHLGMGFDVQGGGSDLVFPHHEMGASHAQVLTGEH 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A ++H G + L G KMSKS GN + ++ L ++ G PA IRLA+L HYR Sbjct: 269 PFAQAYVHAGMVALHGEKMSKSRGNLVFVSAL---RRDGVD--PA-AIRLALLAHHYRAD 322 Query: 320 IDFTVQRLTEAEILLSKW 337 ++T L EA L++W Sbjct: 323 WEWTDGVLQEAVERLARW 340 >gi|224369768|ref|YP_002603932.1| CysS3 [Desulfobacterium autotrophicum HRM2] gi|223692485|gb|ACN15768.1| CysS3 [Desulfobacterium autotrophicum HRM2] Length = 759 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/476 (28%), Positives = 224/476 (47%), Gaps = 54/476 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R F+ + +Y CGPTV+ R + D+L R L Y Sbjct: 303 LTLYNTLTRSQERFEPKAQGKVAVYTCGPTVHKAMDPTRFRRFVATDLLVRYLEYR--GL 360 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V NITD+DD+ I+ + + ++P T + + F KD TRL P Sbjct: 361 TVNHVVNITDLDDRTIKGSERMDMTVPE------FTRPHIRSFKKDLTRLGVRPAQAYPL 414 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKY 183 + HI M+ + + ++ G AYE N + D SS+ YGS S +D+ ++G V + Y Sbjct: 415 VSEHIEDMVAVAERLVEQGVAYEKLNSLYCDISSLEGYGSLSGVNLDKIRVGATVDLDDY 474 Query: 184 HKKNPADFILWKRS--TPMEPGW--ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K NP DF L KR + ++ G + WG RP H++C+A++ Y G FDIH G + Sbjct: 475 EKDNPRDFTLLKRVGLSELKRGVCVRTKWGNVRPSLHLQCAALAMKYHGGGFDIHTGSRE 534 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE A S + E A IW+H + +G ++ G +LLE K G Sbjct: 535 LLFPHHENENAMSRALVK-EPLARIWVHCDCVTYDGSLGVETLGEVDL--DLLE--KLG- 588 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------------- 343 W V+R +L HYR+P+ F+ Q L +A L ++ + S Sbjct: 589 --WEPRVVRFFLLSCHYRKPLTFSSQGLIDAGRALDRFDRCIESLSQVREGEPFPGMDQL 646 Query: 344 -----KGIID--------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH 390 G I V++ L+ + T++ + A H++ ++ ++L +F Sbjct: 647 LYDIRNGFISSMDDDLKISGVMAVLFKGVKTLNRLIACHQI--DARGAREVLALFREING 704 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +L I + K++S L+++R +++ AD +R+++++ G + D K Sbjct: 705 VLNI--FEFEPGKSVSHEAAALIEKREAARLSGQWTLADRLRQEIKALGVEINDKK 758 >gi|256832427|ref|YP_003161154.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Jonesia denitrificans DSM 20603] gi|310947186|sp|C7R3Z4|MSHC_JONDD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|256685958|gb|ACV08851.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Jonesia denitrificans DSM 20603] Length = 423 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/422 (31%), Positives = 194/422 (45%), Gaps = 45/422 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ +T ++ E MYVCG T YD HIG+A I FD+LYR + Sbjct: 18 SVRVMDTSSGQLVETVRPGVGESSMYVCGITPYDATHIGHAATYIAFDLLYRA--WLDAG 75 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V Y N+TD+DD ++ERA D + TS+ T F D + L L P Sbjct: 76 QRVVYTSNVTDVDDPLLERATATG-----VDWTELATSQITL-FFDDMSALGVLPPHTYL 129 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA------------NNEIIFDTSSIPNYGSFS----- 166 A +P +I ++++ G AY +I D +S P++GS S Sbjct: 130 SAVESVPMVISATRHLLESGRAYRVPVPAQERPVHSPAYDIYADVTSDPDFGSISGYTSE 189 Query: 167 -RRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSS 224 R ++ + G P KKNP D I+WK EPGW+ G GRPGWHIEC+ ++ Sbjct: 190 ERVRLFTDRGGD--PATPGKKNPIDPIMWKAQREGEPGWDGDDLGWGRPGWHIECTTIAH 247 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +G+ + GGG DLIFPHHE A + + A++ H G + +G KMSKS GN Sbjct: 248 CGIGRSCTVQGGGSDLIFPHHEMSSAHARALFGQDAGASVHAHAGLIAYQGEKMSKSKGN 307 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 + ++ L + IRLA+L HYR+ ++T L W Q ++ Sbjct: 308 LVFVSRLRQEGV------DPMAIRLAILANHYRDEWEWTSDVLDAGIKRHQLWLQAMSTN 361 Query: 345 GIIDP-----AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----IFNASAHILGI 394 G P A+ AL NDL+ A+ A+ A + +D P + A +LGI Sbjct: 362 GGPHPGATLAAMREALSNDLDAPRALDAVDAWAYATLAGNDEDPGAPGVVSRAVNALLGI 421 Query: 395 EV 396 + Sbjct: 422 RL 423 >gi|300934462|ref|ZP_07149718.1| cysteinyl-tRNA synthetase [Corynebacterium resistens DSM 45100] Length = 438 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/348 (33%), Positives = 178/348 (51%), Gaps = 33/348 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ +Y+T + +I +I P+ I MYVCG T YD H+G+A + FD++ R L Sbjct: 18 ELCLYDTADDQIRPV-SIPPAGKEIGMYVCGITPYDSTHLGHAATYLTFDLINRYL--VA 74 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQ--QFVKDTTRLACLAP 119 V YV+NITD+DD + ERA + D + ++Q F D L + P Sbjct: 75 AGHQVHYVQNITDVDDPLFERAER--------DGVDWRELGDSQIDLFRSDMEALQVIPP 126 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKM 175 A + +++ ++ ++ G AY+ +++ I D + +G SR D M Sbjct: 127 RDYIGAIESVGEVVEMVGRLLEVGAAYQLSDDEFADIYADHTFTKQFGYESR--YDASTM 184 Query: 176 GTRV------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 PE+ K++P D +LW+ EP W++P+G GRPGWHIECSA++++ LG Sbjct: 185 AELFAERGGDPERPGKRHPMDALLWRAHREGEPQWDAPFGAGRPGWHIECSAIATNRLGP 244 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 F I GGG DL FPHHE A + A E+ A+ ++H G + L+G KMSKS GN + ++ Sbjct: 245 QFSIQGGGSDLRFPHHEFSAAHAEAAHGCERMADHYVHAGMIALDGVKMSKSLGNLVFVS 304 Query: 290 ELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 +L IRL + +HYR D++ + L AE L W Sbjct: 305 KLTAAGH------EPSAIRLGVYASHYRTDRDWSDEVLATAEQRLRLW 346 >gi|319777676|ref|YP_004137327.1| cysteinyl-tRNA synthetase [Mycoplasma fermentans M64] gi|238810260|dbj|BAH70050.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038751|gb|ADV34950.1| Cysteinyl-tRNA synthetase [Mycoplasma fermentans M64] Length = 411 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 136/429 (31%), Positives = 212/429 (49%), Gaps = 36/429 (8%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVY+ HIGN P++ FD++ + R GEK T+V NITDIDDKII RAR+ Sbjct: 2 LKIYVCGPTVYNDLHIGNMVPILTFDLMLKA-RRVLGEK-FTFVHNITDIDDKIINRARE 59 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 +N + ++ K T+ ++K L +H + T+++ +I + + + +A Sbjct: 60 ------LNISEKELSQKYTKDYLKLLKTLDVDTISHLEKVTDNMGLIIEYVNKQVKNNNA 113 Query: 146 Y-EANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 Y + + FD N YG + +D+ + +KK ADF LWK+ T + Sbjct: 114 YIDQEGNVWFDVKKFENHYGQVANLNLDKMIFE---EQNNNKKFEADFALWKK-TNVGIQ 169 Query: 204 WESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 ++SP+ +GRPGWH EC+ + + H+ K DIHGGG+DL FPHHENE Q + T Sbjct: 170 FDSPFSKGRPGWHTECAVLINKHFKNKGLDIHGGGMDLTFPHHENENIQHFALYNQDITK 229 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 WI G +N EG KMSKS GN I + L + +++L +L + PI+ Sbjct: 230 E-WIRCGQINYEGEKMSKSLGNVILAKDFL-------KEHDREILKLIILSSKISAPINV 281 Query: 323 TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL- 381 T + + ++L+K+ + I + + N I K+ S N+ L Sbjct: 282 TNELIENMYVILNKYKKLIFKFFINFKNIDKSKINKNEEFIKIMNSLKIGDFSDFNYLLN 341 Query: 382 --LPIFNASAHILGIEVCKEHL---------NKNISIAIEKLVQERLILLKMKKFSSADY 430 + FN + +I E+ L N + A E Q R + K K++ AD Sbjct: 342 EQIKEFNKTKNIKNAEIIFNTLKVIHPQLTIKANYNKAFELFDQWRCFIDK-KEYKQADK 400 Query: 431 IRKQLESKG 439 IRK+L G Sbjct: 401 IRKKLMKLG 409 >gi|302698421|ref|XP_003038889.1| hypothetical protein SCHCODRAFT_80995 [Schizophyllum commune H4-8] gi|300112586|gb|EFJ03987.1| hypothetical protein SCHCODRAFT_80995 [Schizophyllum commune H4-8] Length = 768 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 133/231 (57%), Gaps = 12/231 (5%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF 165 +F D RL P R T ++P+++ +Q +I +G+AYE+ + FDT + + Sbjct: 244 RFFDDMARLRVRRPDTVTRVTEYVPEIVAFVQKVIDNGYAYESAGSVYFDTQAFDAAPNH 303 Query: 166 SRRKIDEQKMGTRVPE----KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSA 221 K++ G R + +++ +DF LWK S P EP WESPWG GRPGWHIECS Sbjct: 304 FYAKLEPYSKGNREDDGGSRAAGQRSASDFALWKASKPGEPYWESPWGHGRPGWHIECSV 363 Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 M+S LG DIH GG+DL FPHH+NE+AQS N ++H G L++EG KMSKS Sbjct: 364 MASAILGDNMDIHSGGVDLAFPHHDNEMAQSEAYHDCSAWVNYFLHTGHLHIEGLKMSKS 423 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 NFITI+E+LE +F R +RL+ L + +DF+ + L + E+ Sbjct: 424 LKNFITIDEILE--RFTARQ-----LRLSFLSQLWNAKLDFS-EALMQGEV 466 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF + ++ Y CGPTVYD +H+G+AR + D+L R++ Y+G Sbjct: 19 LKVYNTLTKAKNEFIPSNGRLVKWYNCGPTVYDASHMGHARNYVSQDILRRIMSDYFGYD 78 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +V NITDID+KII+RAR+ H Sbjct: 79 -VHFVMNITDIDNKIIDRARKTH 100 >gi|328766817|gb|EGF76869.1| hypothetical protein BATDEDRAFT_92152 [Batrachochytrium dendrobatidis JAM81] Length = 755 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 130/237 (54%), Gaps = 17/237 (7%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS 166 F D L P R + +IP++I +Q I+ +G+AYE + + FDT S Sbjct: 233 FFHDMDSLNIRRPDVLTRVSEYIPEIIAFVQKIMSNGYAYEFDGSVYFDTVCFDRSDKHS 292 Query: 167 RRKID----------EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 KI+ ++ G + K+N +DF LWK S P EP W SPWG GRPGWH Sbjct: 293 YAKIEPWSAGNVKLVQEGEGDLTADTSGKRNISDFALWKSSKPGEPSWSSPWGEGRPGWH 352 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECSAM+ LG+ DIH GG+DL FPHH+NE+AQS + N ++H G L++EG+ Sbjct: 353 IECSAMAGCVLGEKIDIHSGGIDLTFPHHDNELAQSEGHFGCTQWVNYFMHTGHLHIEGQ 412 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 KMSKS NFI+I E LE A IR+ L+ H+ +D++ L+EA + Sbjct: 413 KMSKSLKNFISIKEALEQS-------TAQQIRIMYLLHHWDSTLDWSAGSLSEARTI 462 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ I N+L RK F + Y CGPTVYD +H+G+AR FD++ R++ Y+G Sbjct: 23 RLYINNSLTRKKELFVPEKGRRVTWYSCGPTVYDKSHVGHARTFFSFDIVRRIMSEYFGY 82 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII ARQ+H Sbjct: 83 D-LQYVMNITDIDDKIIVSARQKH 105 >gi|294155832|ref|YP_003560216.1| cysteine--tRNA ligase [Mycoplasma crocodyli MP145] gi|291600502|gb|ADE19998.1| cysteine--tRNA ligase [Mycoplasma crocodyli MP145] Length = 408 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 185/346 (53%), Gaps = 27/346 (7%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVY+ HIGN RP++ FD++ R Y K + NITDIDDKII +A + Sbjct: 2 LKIYVCGPTVYNDLHIGNIRPILNFDLMLR--AYRNTGKDFILIHNITDIDDKIINKALE 59 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E+ D + +I+ + Q++K L +H +++ M I+NI + A Sbjct: 60 ENV-----DEL-VISQRYANQYIKLLQELNIKTISHLEYVRDNLDVMKKYIENIRQNKDA 113 Query: 146 Y-EANNEIIFDTS-SIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 Y + ++FD + YG+ S +KI++ E KK+P+DF LWK+ T + Sbjct: 114 YLDKEGNVLFDVEKNKKAYGTVSNQKIEQMVFE---QENSTKKHPSDFSLWKK-TNVGVK 169 Query: 204 WESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 + S +G GRPGWH EC A+ H+ G+ DIHGGG+DL FPHHENE Q + + A Sbjct: 170 FNSQFGEGRPGWHTECCAIIDKHFPGQGVDIHGGGIDLKFPHHENENIQHYSLYK-KPLA 228 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 WIH G +N G KMSKS GN I + LE + G ++ R+ +L+ P++ Sbjct: 229 KNWIHCGHINYNGEKMSKSLGNVILAKDFLE--EHGSNTF-----RMILLLADITSPMNL 281 Query: 323 TVQRLTEAEILLSKWPQTSTSKGIIDPAVL----SALYNDLNTVSA 364 + + ++ + +K Q + ++D + LY +LN++ A Sbjct: 282 SDSLIENSKKIYAKIKQVAFKNFLLDANKIIDLNEELYIELNSLVA 327 >gi|190347294|gb|EDK39538.2| hypothetical protein PGUG_03636 [Meyerozyma guilliermondii ATCC 6260] Length = 769 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 129/228 (56%), Gaps = 18/228 (7%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGS 164 +F +D RL L PT+ R + +IP+++ ++ II +G AY + + FDT+ N Sbjct: 241 KFNEDMARLNVLPPTYTTRVSEYIPEIMAFVEKIISNGFAYPTKDGSVYFDTAKFENDPK 300 Query: 165 FSRRKID----------EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 K+ G+ + KKNPADF LWK S P EP W+S WG GRPG Sbjct: 301 HDYAKLQPWNKGDMSLINDGEGSLSLGQESKKNPADFALWKASKPGEPAWDSKWGPGRPG 360 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECS M+S G+ DIH GG+DL FPHH+NE+AQS E+ N ++HNG L+++ Sbjct: 361 WHIECSVMASDITGETMDIHSGGIDLCFPHHDNELAQSEAYFNNEQWVNYFMHNGHLHIQ 420 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 G+KMSKS NFITI + L F R +RL M+ + P+DF Sbjct: 421 GQKMSKSLKNFITIEQAL--NDFTSRQ-----MRLVFAMSAWDRPLDF 461 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 60/83 (72%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R TEF + P+++ Y CGPTVYD +H+G+AR + D+ R+L+ Y+G Sbjct: 34 LMIYNSLTRTKTEFNTLVPNHVTWYCCGPTVYDHSHMGHARNYVSTDISRRILQDYFGYN 93 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 VT+V+N+TDIDDKII ARQE+ Sbjct: 94 -VTFVQNVTDIDDKIIVAARQEY 115 >gi|146416571|ref|XP_001484255.1| hypothetical protein PGUG_03636 [Meyerozyma guilliermondii ATCC 6260] Length = 769 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 129/228 (56%), Gaps = 18/228 (7%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGS 164 +F +D RL L PT+ R + +IP+++ ++ II +G AY + + FDT+ N Sbjct: 241 KFNEDMARLNVLPPTYTTRVSEYIPEIMAFVEKIISNGFAYPTKDGSVYFDTAKFENDPK 300 Query: 165 FSRRKID----------EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 K+ G+ + KKNPADF LWK S P EP W+S WG GRPG Sbjct: 301 HDYAKLQPWNKGDMSLINDGEGSLSLGQESKKNPADFALWKASKPGEPAWDSKWGPGRPG 360 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECS M+S G+ DIH GG+DL FPHH+NE+AQS E+ N ++HNG L+++ Sbjct: 361 WHIECSVMASDITGETMDIHSGGIDLCFPHHDNELAQSEAYFNNEQWVNYFMHNGHLHIQ 420 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 G+KMSKS NFITI + L F R +RL M+ + P+DF Sbjct: 421 GQKMSKSLKNFITIEQAL--NDFTSRQ-----MRLVFAMSAWDRPLDF 461 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 60/83 (72%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R TEF + P+++ Y CGPTVYD +H+G+AR + D+ R+L+ Y+G Sbjct: 34 LMIYNSLTRTKTEFNTLVPNHVTWYCCGPTVYDHSHMGHARNYVSTDISRRILQDYFGYN 93 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 VT+V+N+TDIDDKII ARQE+ Sbjct: 94 -VTFVQNVTDIDDKIIVAARQEY 115 >gi|330468546|ref|YP_004406289.1| cysteinyl-tRNA synthetase [Verrucosispora maris AB-18-032] gi|328811517|gb|AEB45689.1| cysteinyl-tRNA synthetase [Verrucosispora maris AB-18-032] Length = 395 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 109/318 (34%), Positives = 163/318 (51%), Gaps = 26/318 (8%) Query: 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIER 82 P MYVCG T YD H+G+A MI FD++ R+ R E V YV+N+TDIDD ++ER Sbjct: 15 PGTATMYVCGITPYDATHLGHAATMITFDLVQRMWRDAGHE--VRYVQNVTDIDDPLLER 72 Query: 83 ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH 142 A ++ + ++ + T F +D L + P H A IP++ + ++ Sbjct: 73 AERD------GEDWKVLAMRETALFREDMEALRIIPPAHYIGAVESIPEIAEKVLVLLKD 126 Query: 143 GHAY---EANNEIIFDTSSIPNYG---SFSRRKIDE---QKMGTRVPEKYHKKNPADFIL 193 AY + ++ FD S+ P +G + SR ++ E ++ G P++ K++P D +L Sbjct: 127 DAAYRLDDGTGDVYFDISAAPRFGYESNLSRAEMLELFPERGGD--PDRAGKRDPLDPLL 184 Query: 194 WKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 W+ + EP W G GRPGWHIEC+ ++ LG D+ GGG DLIFPHHE A + Sbjct: 185 WRGAREGEPSWPGGELGPGRPGWHIECTVIALALLGNTIDVQGGGNDLIFPHHECSAAHA 244 Query: 253 CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 A ++H G + L+G KMSKS GN + ++ L K +RLA+L Sbjct: 245 ERLTGAAPFAGHYVHAGMIGLDGEKMSKSLGNLVFVSRLRADKV------DPMAVRLALL 298 Query: 313 MTHYREPIDFTVQRLTEA 330 HYR +T L A Sbjct: 299 SGHYRADRSWTDDLLATA 316 >gi|297626576|ref|YP_003688339.1| Cysteine--tRNA ligase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922341|emb|CBL56913.1| Cysteine--tRNA ligase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 418 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 133/435 (30%), Positives = 203/435 (46%), Gaps = 55/435 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + +++ + T R+ D + +YVCG T YD H+G+A ++FDVL R+ R Sbjct: 21 VPERLVMVTTNNRRAVPIGPAD-GDAGLYVCGITPYDATHMGHAFTYVMFDVLDRVWRDL 79 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLAC 116 V Y +N+TD+DD ++ERAR A + + S TQ F D L Sbjct: 80 --GLNVRYAQNVTDVDDPLLERAR----------ATGVDWRELASDQTQLFRDDMESLRV 127 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGS---FSRRK 169 L P AT+ I +++ LI+ + G Y+ ++ + F+ P +G+ SR+ Sbjct: 128 LPPRWYVPATSIIDEVVELIERLRQQGTIYQVDDPQYPDWYFEVGKAPGFGTESHLSRQD 187 Query: 170 -IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 I E PE+ K++ D ++W+ P EP W+S GRGRPGWHIEC+A + + LG Sbjct: 188 MISEFAEHGGDPERPGKRDALDCLVWRMERPGEPAWDSRLGRGRPGWHIECTATALNRLG 247 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT----ANIWIHNGFLNLEGRKMSKSNGN 284 + F + GGG DL FPHHE C A+ I T A +IH G + L+G KMSKS GN Sbjct: 248 EDFAVQGGGRDLAFPHHE-----MCAAEAIVATGKPFAEAYIHVGMVGLDGEKMSKSLGN 302 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-PQTSTS 343 + ++ K + IRLA+L Y +T L +A+ L W T S Sbjct: 303 LVLVS------KLRAQGVDPMAIRLALLAHGYASDWSWTQAGLDDAQRRLDAWRAATRAS 356 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA-SAHILGIEVCKEHLN 402 G + V I + + RE L + + S+ +L + Sbjct: 357 SGT-------------DAVPVIADIRRALREGLDTPTALAVVDEWSSAVLAGDGDDLAAP 403 Query: 403 KNISIAIEKLVQERL 417 + IS A++ L+ RL Sbjct: 404 QQISQAVDALLGIRL 418 >gi|167519473|ref|XP_001744076.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777162|gb|EDQ90779.1| predicted protein [Monosiga brevicollis MX1] Length = 667 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 132/237 (55%), Gaps = 17/237 (7%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD-----TSSIP 160 +F +D + L R T ++PQ++ IQ II +G AYE+N + FD T Sbjct: 171 EFFQDMSALNVEPADVITRVTGYVPQIVAYIQRIIDNGFAYESNGSVYFDVTKFRTDKDH 230 Query: 161 NYGSFSRRKIDEQKM-----GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215 Y + K+ G K+N +DF LWK S P EP W SPWG+GRPGW Sbjct: 231 TYAKLKPEAVGNDKLLSDGEGALSGAGSEKRNQSDFALWKASKPGEPSWTSPWGQGRPGW 290 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIECSAM+S LG DIH GG+DL FPHH+NE+AQS + ++ N ++H+G L++EG Sbjct: 291 HIECSAMASDILGDNMDIHSGGVDLQFPHHDNELAQSEAYFQNDQWVNYFLHSGHLHIEG 350 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 KMSKS NFITI + LET + A IR L+ + + ++++ EA++ Sbjct: 351 LKMSKSLKNFITIKQALET-------YTARQIRFMFLLHSWTDTLNYSADAFEEAQV 400 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 Y CGPTVYD AH+G+AR + FD+L R+LR Y+G V +V NITDIDDKII RARQ+H Sbjct: 12 YACGPTVYDAAHLGHARSYVSFDILRRILREYFGYD-VQFVMNITDIDDKIIIRARQQH 69 >gi|84496470|ref|ZP_00995324.1| cysteinyl-tRNA synthetase [Janibacter sp. HTCC2649] gi|84383238|gb|EAP99119.1| cysteinyl-tRNA synthetase [Janibacter sp. HTCC2649] Length = 414 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 121/371 (32%), Positives = 192/371 (51%), Gaps = 36/371 (9%) Query: 17 EFQAIDPSNI-RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI 75 E + + P + R+YVCG T YD H+G+A + FD++ R+LR E V Y +N+TD+ Sbjct: 28 ELREVVPGEVARLYVCGITPYDATHLGHAATYVAFDLVGRVLRDNGHE--VHYTQNVTDV 85 Query: 76 DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 DD ++ERA+++ I D + + +D T L + P +P + L Sbjct: 86 DDPLLERAKRD--GIDWRD----LAVAEADLYREDMTALQVIPPQDYIGVVEALPVIADL 139 Query: 136 IQNIILHGHAYEANNE------IIFDTSSIPNYGSFSRRKIDE------QKMGTRVPEKY 183 ++ I G AYE N+ + D S + +G S ++ ++ G P++ Sbjct: 140 VRRTIESGAAYELPNDEAEGPDLYVDLSHVSGFGKVSGWTREQMLTVFAERGGD--PDRP 197 Query: 184 HKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ D +LW+ + EP WE GRPGWH+EC+A++ LG D++GGG DLIF Sbjct: 198 GKRDVLDPLLWRAARDGEPSWEFEGLPAGRPGWHVECTAIALDRLGVPIDVNGGGSDLIF 257 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE +AQ+ A ++ A + H G + L+G KMSKS GN + +++L + G Sbjct: 258 PHHEMTVAQA-SAIGVDDYARLHAHAGMVGLDGHKMSKSRGNLVLVSKL----RADGVDP 312 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPAVLSALYN 357 A IRL +L HYR D+T + LT A+ L W + T+ S A+ +AL + Sbjct: 313 MA--IRLVLLAEHYRSDWDYTPELLTVAQTRLEHWREALSVNTAPSADETVAAIRAALSD 370 Query: 358 DLNTVSAIQAL 368 DL+ A+ A+ Sbjct: 371 DLDAPRALAAI 381 >gi|308802207|ref|XP_003078417.1| Cysteinyl-tRNA synthetase (ISS) [Ostreococcus tauri] gi|116056869|emb|CAL53158.1| Cysteinyl-tRNA synthetase (ISS) [Ostreococcus tauri] Length = 503 Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 92 INDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 I D + + +F++D L P R + ++ ++I IQ II G AYE+NN Sbjct: 199 IQDGYLELAREFEAEFMEDMKSLGIARPDALTRVSEYVDKVILYIQVIINKGFAYESNNS 258 Query: 152 IIFDTSSIPN-----YGSFSRRKID--EQKM---GTRVPEKYHKKNPADFILWKRSTPME 201 + FD + YG ++ + E+ M G EK K++ DF+LWK S E Sbjct: 259 VYFDVKAFEEAENHKYGKLNKNAMANVEEAMDGEGALAAEKSEKRSEFDFVLWKASKSGE 318 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 P W SPWG GRPGWHIECSAM S LGK DI+GGG+DL FPHHEN++AQS IE+ Sbjct: 319 PSWSSPWGMGRPGWHIECSAMCSDVLGKSVDINGGGIDLNFPHHENQLAQSEAHYDIEQW 378 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N +IH G L+++G KMSKS NFITI L + + A IR L+ + +P++ Sbjct: 379 VNFFIHTGHLHIDGLKMSKSLKNFITIRAAL-------KMYSARQIRFLFLLNQWCDPME 431 Query: 322 FT 323 T Sbjct: 432 LT 433 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +++ ++ NT + F + +++ Y+CGPTVYD AH+G+AR + FDVL R++ Y Sbjct: 43 LRRGPRLLNTFTKTKVPFVPLSGNSVGWYICGPTVYDSAHVGHARNYVNFDVLRRVMSEY 102 Query: 61 YGEKCVTYVRNITDIDDKIIERA 83 +G V +V N+TDIDDKII RA Sbjct: 103 FGYD-VRFVMNVTDIDDKIIMRA 124 >gi|157105607|ref|XP_001648945.1| cysteinyl-tRNA synthetase [Aedes aegypti] gi|108880067|gb|EAT44292.1| cysteinyl-tRNA synthetase [Aedes aegypti] Length = 735 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 96/253 (37%), Positives = 134/253 (52%), Gaps = 20/253 (7%) Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 ++E S+ N + +F KD L LAP R + ++PQ++ IQ II +G Sbjct: 191 KKEGASVNENSIFETLPRYWEDEFHKDMNALNVLAPDVLTRVSEYVPQIVEYIQKIIDNG 250 Query: 144 HAYEANNEIIFDTSS------------IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 AYEAN + FD + +P YG + E + T K++P D Sbjct: 251 LAYEANGSVYFDVAGFDKREKHYYAKLVPEAYGDAKSLQEGEGDLSTTEDRLSEKRSPND 310 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK S EP W SPWG+GRPGWHIECSAM+S G DIH GG+DL FPHH+NE+A Sbjct: 311 FALWKNSKAGEPWWNSPWGKGRPGWHIECSAMASDICGDYLDIHTGGVDLKFPHHDNELA 370 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 QS D + ++H G L + G KMSKS NF+TI + L+ A +RLA Sbjct: 371 QSEAHDNSSEWVKYFLHTGHLTIAGCKMSKSLKNFVTIQQALQKH-------TATQLRLA 423 Query: 311 MLMTHYREPIDFT 323 L+ +++ +D++ Sbjct: 424 FLLHSWKDTLDYS 436 Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R+ F D N++ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 KLRLYNSLTRQKELFVPKDGKNVKWYSCGPTVYDASHMGHARSYISFDILRRVLTDYFGY 79 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ + Sbjct: 80 N-VLYVMNITDIDDKIIKRARQNY 102 >gi|308190282|ref|YP_003923213.1| cysteine--tRNA ligase [Mycoplasma fermentans JER] gi|307625024|gb|ADN69329.1| cysteine--tRNA ligase [Mycoplasma fermentans JER] Length = 411 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 136/429 (31%), Positives = 211/429 (49%), Gaps = 36/429 (8%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVY+ HIGN P++ FD++ + R GEK T+V NITDIDDKII RAR+ Sbjct: 2 LKIYVCGPTVYNDLHIGNMVPILTFDLMLKA-RRVLGEK-FTFVHNITDIDDKIINRARE 59 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 +N + ++ K T+ ++K L +H + T+++ +I + + + +A Sbjct: 60 ------LNISEKELSQKYTKDYLKLLKTLDVDTISHLEKVTDNMGLIIEYVNKQVKNNNA 113 Query: 146 Y-EANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 Y + + FD N YG + +D+ + +KK ADF LWK+ T + Sbjct: 114 YIDQEGNVWFDVKKFENHYGQVANLNLDKMIFE---EQNNNKKFEADFALWKK-TNVGIQ 169 Query: 204 WESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 ++SP+ +GRPGWH EC + + H+ K DIHGGG+DL FPHHENE Q + T Sbjct: 170 FDSPFSKGRPGWHTECVVLINKHFKNKGLDIHGGGMDLTFPHHENENIQHFALYNQDITK 229 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 WI G +N EG KMSKS GN I + L + +++L +L + PI+ Sbjct: 230 E-WIRCGQINYEGEKMSKSLGNVILAKDFL-------KEHDREILKLIILSSKISAPINV 281 Query: 323 TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL- 381 T + + ++L+K+ + I + + N I K+ S N+ L Sbjct: 282 TNELIENMYVILNKYKKLIFKFFINFKNIDKSKINKNEEFIKIMNSLKIGDFSDFNYLLN 341 Query: 382 --LPIFNASAHILGIEVCKEHL---------NKNISIAIEKLVQERLILLKMKKFSSADY 430 + FN + +I E+ L N + A E Q R + K K++ AD Sbjct: 342 EQIKEFNKTKNIKNAEIIFNTLKVIHPQLTIKANYNKAFELFDQWRCFIDK-KEYKQADK 400 Query: 431 IRKQLESKG 439 IRK+L G Sbjct: 401 IRKKLMKLG 409 >gi|19115476|ref|NP_594564.1| cytoplasmic cysteine-tRNA ligase Crs1 (predicted) [Schizosaccharomyces pombe 972h-] gi|1351621|sp|Q09860|SYC_SCHPO RecName: Full=Probable cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1044932|emb|CAA91428.1| putative cysteinyl-trna synthetase [Schizosaccharomyces pombe] gi|6723893|emb|CAB66469.1| cytoplasmic cysteine-tRNA ligase Crs1 (predicted) [Schizosaccharomyces pombe] Length = 754 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 127/226 (56%), Gaps = 18/226 (7%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSF 165 F KD L L PT R + ++P+++ +Q II G+AY + + FDT + G F Sbjct: 229 FNKDMANLNVLPPTAVTRVSEYVPEIVDFVQRIIDRGYAYPVTDGSVYFDTEAFEKGGHF 288 Query: 166 SRRKIDEQKMGTR---------VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 K++ G R + KK P DF LWK S P EP W+SPW +GRPGWH Sbjct: 289 -YAKLEPWNKGNRELIAEGEGSLAALTGKKRPGDFALWKASKPGEPSWDSPWSKGRPGWH 347 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECS M+S LG DIH GG+DL FPHH+NE+AQS + N + H G L++EG+ Sbjct: 348 IECSVMASALLGSNIDIHSGGIDLAFPHHDNELAQSEAYFDCPQWVNYFFHAGHLHIEGQ 407 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 KMSKS NFITI E+L KKF R +RLA L+ + +DF Sbjct: 408 KMSKSLKNFITIKEIL--KKFTPRQ-----LRLAFLLQQWNTQLDF 446 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 61/86 (70%), Gaps = 2/86 (2%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++ +YNTL F + + SN+ Y CGPTVYD +H+G+AR + D+L R+L+ Y+ Sbjct: 18 RTELYVYNTLTHSKVPFVS-NGSNLTWYCCGPTVYDASHMGHARNYVTTDILRRILQSYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G +T+V+N+TDIDDKII RARQ++ Sbjct: 77 GYN-ITFVQNVTDIDDKIILRARQQY 101 >gi|269956278|ref|YP_003326067.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Xylanimonas cellulosilytica DSM 15894] gi|310947227|sp|D1BS17|MSHC_XYLCX RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|269304959|gb|ACZ30509.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase [Xylanimonas cellulosilytica DSM 15894] Length = 404 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 170/345 (49%), Gaps = 37/345 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++++ + + E A + +Y CG T YD H+G+A + FD+L R + K Sbjct: 21 VLVHDSTTQSLVE--AAPGATATLYACGITPYDATHLGHANTYLAFDLLQRA--WLDAGK 76 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLACLAPT 120 V Y N+TD+DD ++ERA A + + + T+ + D T L L P Sbjct: 77 TVVYTSNVTDVDDPLLERAT----------ATGVDWRELAREQTELYRTDMTALRMLPPA 126 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS------RRKIDEQK 174 A IP ++ + ++ G AY + ++ D S+ P +G + R + ++ Sbjct: 127 TWTGAVESIPAVVEAVTALLDAGAAYRVDADVYADLSADPGFGRVAGLDDATMRALFAER 186 Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYLGKVFDI 233 G P++ KK+P D LW+ P EP W+ G GRPGWHIEC+ ++ LG FD+ Sbjct: 187 GGD--PDRPGKKHPLDPALWRGEQPGEPSWDGGKLGPGRPGWHIECAVIARDGLGLPFDV 244 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 GGG DL+FPHH E++ S A + +H G L +G KMSKS GN + ++ LL Sbjct: 245 QGGGADLLFPHH--EMSTSHARLLAGGAARVHVHAGLLAYDGHKMSKSRGNLVFVSRLLA 302 Query: 294 TKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 P+ +RLA+L HYRE ++T L A+ L W Sbjct: 303 AGT-------DPMTVRLALLAHHYREEWEWTDVELRTAQRRLDTW 340 >gi|317506755|ref|ZP_07964536.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Segniliparus rugosus ATCC BAA-974] gi|316254954|gb|EFV14243.1| cysteine-1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Segniliparus rugosus ATCC BAA-974] Length = 354 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/357 (30%), Positives = 179/357 (50%), Gaps = 41/357 (11%) Query: 4 KIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++++++ +R + + + P MYVCG T YD H+G+A + FD++ RL + Sbjct: 18 QLRLWDSADRLL---RPVAPGRKAGMYVCGITPYDATHLGHAATYLAFDLVCRL--WLDA 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y +NITD+DD ++ERA ++ + + ++ + F D L L P Sbjct: 73 GHEVHYTQNITDVDDPLLERAERD------DRDWRALAAEQIELFRTDMAALRVLPPQDY 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 T I ++ +++ ++ + AY ++ + ++G S DE TR Sbjct: 127 VGVTESIDLVVAMVEKLLANQSAYVVAEGEYPDVYHRVGATEDFGYVSGYDRDEM---TR 183 Query: 179 V-------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 V P++ K +P D +LW+ + P EP W SP+G GRPGWH+ECSA++ +G F Sbjct: 184 VFRERGGDPDRPGKADPLDALLWRAARPGEPSWPSPFGPGRPGWHVECSAIALDRIGFGF 243 Query: 232 DIHGGGLDLIFPHHENEIAQS------CC---ADRIEKTANIWIHNGFLNLEGRKMSKSN 282 D+ GGG DL+FPHHE A + C AD + A ++H G + L+G KMSKS Sbjct: 244 DVQGGGADLVFPHHEFSAAHAQAQVGGCSVPGADGRGRFARNYVHAGMIGLDGEKMSKSL 303 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 GN + +++L IRLA+ HYR + L +A+ LS+W Q Sbjct: 304 GNLVFVSKLRAAGV------DPSAIRLALFAGHYRADRSWDQNLLAQAQARLSRWRQ 354 >gi|195382430|ref|XP_002049933.1| GJ21863 [Drosophila virilis] gi|194144730|gb|EDW61126.1| GJ21863 [Drosophila virilis] Length = 741 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 135/247 (54%), Gaps = 23/247 (9%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------- 158 F D L L P R + ++PQ++ IQ II +G AYEAN + FD + Sbjct: 215 FHNDMKSLNILPPDVLTRVSEYVPQIVAFIQRIIDNGLAYEANGSVYFDVNGFDKREKHH 274 Query: 159 ----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 +P YG + + E + K++P DF LWK S EP W+SPWG GRP Sbjct: 275 YAKLVPEAYGDTTSLQEGEGDLSVTADRLSEKRSPNDFALWKASKAGEPWWDSPWGHGRP 334 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+S G +FDIH GG+DL FPHH+NE+AQS A + ++H G L + Sbjct: 335 GWHIECSAMASDIFGSIFDIHTGGVDLKFPHHDNELAQSEAAFGESEWVKYFLHTGHLTI 394 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTEA 330 G KMSKS NF+TI E L R A +RLA L+ +++ +D+ T++ T+ Sbjct: 395 AGCKMSKSLKNFVTIQEAL-------RKHSATQLRLAFLLHSWKDTLDYSENTMEMATQY 447 Query: 331 EILLSKW 337 E L+++ Sbjct: 448 EKFLNEF 454 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++YN+L R+ EF + +N++ Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RPQLRLYNSLTRQKEEFVPLSGNNVKWYSCGPTVYDASHMGHARSYISFDILRRILANYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII+RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIKRARQYH 101 >gi|71406898|ref|XP_805952.1| cysteinyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] gi|70869553|gb|EAN84101.1| cysteinyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 785 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/327 (34%), Positives = 159/327 (48%), Gaps = 48/327 (14%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG--- 163 F +D RL P R T ++PQ++ IQ I+ +G AY + I FDT++ G Sbjct: 246 FFEDMRRLGVRDPDVVSRVTEYVPQVVDFIQKIMDNGFAYRGTSSIFFDTTAFLRAGHDY 305 Query: 164 ------------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 + ++ E + V K+N DF LWK S P EP W SPWG G Sbjct: 306 PKLKPVSESGENDATEAEMAEGEGALTVGVAGEKRNANDFALWKFSKPGEPRWPSPWGEG 365 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG D+H GG DL FPHH+NE AQS + N ++H G L Sbjct: 366 RPGWHIECSVMASDILGTNIDVHSGGWDLKFPHHDNECAQSEACHMQHQWINYFLHCGHL 425 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA- 330 +++G KMSKS NFITI + L+ R V+RL L H+ +P++F+ Q + EA Sbjct: 426 HIKGLKMSKSLKNFITIRQALDELDVTPR-----VMRLLFLANHWGKPMNFSDQSIEEAK 480 Query: 331 -------------EILLSK--WPQTSTSKG----------IIDPAVLSALYNDLNTVSAI 365 +I+L K W +T G + AV AL N+ +T +A+ Sbjct: 481 ERERVLRAFFGSVDIVLRKDNWGETQGLNGHDRRLQETWLTAENAVHGALQNNFDTPAAM 540 Query: 366 QALHKLARESTKNHDLLPIFNASAHIL 392 ++ L NH LL SA ++ Sbjct: 541 DSVMGLV--GATNHYLLSGERPSATLV 565 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++ N+L + F + +R Y CGPTVY+ +H+G+AR + FD+L R++ Y+G Sbjct: 37 KGLRVLNSLTESVEPFAPREGRLVRWYACGPTVYELSHMGHARAYLTFDILRRIMEDYFG 96 Query: 63 EKCVTYVRNITDIDDKIIERAR 84 + V Y NITDIDDKII+RAR Sbjct: 97 YQVV-YQMNITDIDDKIIKRAR 117 >gi|221043810|dbj|BAH13582.1| unnamed protein product [Homo sapiens] Length = 341 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 106/259 (40%), Positives = 144/259 (55%), Gaps = 21/259 (8%) Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 V ITD+DDKII+RA + +N + + + S + F +D L L PT R T + Sbjct: 2 VMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYLRVTEN 55 Query: 129 IPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKK 186 IPQ I I+ II G+AY A + FD S + YG + +G P K+ Sbjct: 56 IPQTISFIEGIIARGNAYSTAKGNVYFDLKSRGDKYGKLV--GVVPGPVGE--PADSDKR 111 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 + +DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL FPHHE Sbjct: 112 HASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLAFPHHE 171 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWPA 304 NEIAQ + E+ N ++H+G L+ +G+ KMSKS N+ITI + L+T + Sbjct: 172 NEIAQCEVFHQCEQWGNYFLHSGHLHAKGKEEKMSKSLKNYITIKDFLKT-------FSP 224 Query: 305 PVIRLAMLMTHYREPIDFT 323 V R L + YR ID++ Sbjct: 225 DVFRFFCLRSSYRSAIDYS 243 >gi|156848081|ref|XP_001646923.1| hypothetical protein Kpol_2000p30 [Vanderwaltozyma polyspora DSM 70294] gi|156117605|gb|EDO19065.1| hypothetical protein Kpol_2000p30 [Vanderwaltozyma polyspora DSM 70294] Length = 769 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 131/238 (55%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGS 164 Q+ D +L L P R + ++P++I ++ II +G+AY A++ + FDT + Sbjct: 242 QYDNDMAKLNVLPPNVTTRVSEYVPEIIEFVEKIISNGYAYAADDGSVYFDTQNFDTSKD 301 Query: 165 FSRRKI------------DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 S K D + + KK+P+DF LWK S P EP WESPWG+GR Sbjct: 302 HSYAKCQPWNKGHLDLINDAEGSLSNFSNTNGKKSPSDFALWKASKPGEPEWESPWGKGR 361 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS + N ++H G L+ Sbjct: 362 PGWHIECSVMASDILGQNIDIHSGGIDLAFPHHDNELAQSEAHFDNNQWINYFLHTGHLH 421 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 +EG+KMSKS NFITI+E L + + A +RLA + +DF + E Sbjct: 422 IEGQKMSKSLKNFITIDEAL-------KMYSARQLRLAFASVQWNNQLDFKESLINEV 472 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%) Query: 2 KKKIKIYNTLERKITEF-QAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 K +K+YNTL R EF + Y CGPTVYD +H+G+AR + D+ R+L+ Y Sbjct: 36 KSVLKVYNTLTRSKEEFIPRSGTKEVSWYSCGPTVYDASHMGHARNYVSIDINRRILQDY 95 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEH 87 +G + +V+N+TDIDDKII RARQ H Sbjct: 96 FGYN-INFVQNVTDIDDKIILRARQNH 121 >gi|119964010|ref|YP_947911.1| cysteinyl-tRNA synthetase [Arthrobacter aurescens TC1] gi|310947171|sp|A1R6P9|MSHC_ARTAT RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|119950869|gb|ABM09780.1| putative cysteinyl-tRNA synthetase (cysS) [Arthrobacter aurescens TC1] Length = 425 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 129/431 (29%), Positives = 201/431 (46%), Gaps = 61/431 (14%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++Y+T ++ + + P MYVCG T YD H+G+A + FD+L R R G Sbjct: 18 QLRLYDTALGRVVDVER-QPEQ-SMYVCGITPYDATHMGHAASYVAFDLLNRAWRDA-GV 74 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLACLAP 119 + V+YV+N+TDIDD ++ERA A + + F D L LAP Sbjct: 75 R-VSYVQNVTDIDDPLLERAT----------ATGVDWRELAQSQIDLFQTDMDALNVLAP 123 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSS-------------- 158 H A IP ++ I+ +I G AY E + ++ +D + Sbjct: 124 NHYIGAVEAIPDIVPAIEQLIADGVAYRVAGSEGEPDGDVYYDVETAGKRSDATDAWTLG 183 Query: 159 -IPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWH 216 + G ++ ++ G P + K++ D +LW+ + EP W S G GRPGWH Sbjct: 184 DVSGLGEKEMLELFAERGGD--PTRAGKRHALDPLLWRVARDGEPSWPGSTLGDGRPGWH 241 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IEC+ ++ YL F + GGG DL+FPHHE + + A + H G + L+G Sbjct: 242 IECTVIAQKYLPAPFTVQGGGSDLVFPHHEMGAGHAYSLSGV-PLARHYSHAGMVGLDGE 300 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK 336 KMSKS GN + +++L + PA IRLA+L HYR +T EA+ L + Sbjct: 301 KMSKSKGNLVLVSKLRAAGEE-----PA-AIRLAILAHHYRSDWSWTDAEFAEAKDRLKQ 354 Query: 337 WPQT-----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------HDLLPIF 385 W + S + A+ L NDLN AI A+ A E+ ++ D + Sbjct: 355 WRAALDHAPAGSAAALISAMRDELANDLNAPGAIAAVDHWAAEAIRSGSDKSEQDTALVT 414 Query: 386 NASAHILGIEV 396 +A +LG+E+ Sbjct: 415 DAIDALLGVEL 425 >gi|238064513|ref|ZP_04609222.1| cysteinyl-tRNA synthetase [Micromonospora sp. ATCC 39149] gi|237886324|gb|EEP75152.1| cysteinyl-tRNA synthetase [Micromonospora sp. ATCC 39149] Length = 412 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 114/353 (32%), Positives = 178/353 (50%), Gaps = 31/353 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A MI FD++ R+ R V YV+N+TDIDD ++ERA ++ Sbjct: 40 MYVCGITPYDATHLGHAATMITFDLVQRMWRD--AGLTVRYVQNVTDIDDPLLERAARD- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + ++ + T F +D L + P H A IP + + ++ G AY Sbjct: 97 -----GEDWKVLAMRETALFREDMEALRMIPPAHYVGAVESIPDIADKVLVLLKDGAAYR 151 Query: 147 --EANNEIIFDTSSIPNYG---SFSRRKIDE---QKMGTRVPEKYHKKNPADFILWKRST 198 + ++ FD ++ P +G + SR ++ E ++ G PE+ K++P D +LW+ + Sbjct: 152 LDDGTGDVYFDIAATPEFGYESNLSRAEMLEIFPERGGD--PERAGKRDPLDPLLWRGAR 209 Query: 199 PMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W G GRPGWHIEC+ ++ + LG+ D+ GGG DL+FPHHE A + Sbjct: 210 EGEPSWPGGDLGPGRPGWHIECAVIALNLLGESIDVQGGGNDLLFPHHECSAAHAERLTG 269 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A ++H G + L G KMSKS GN + ++ L + +RL ++ HYR Sbjct: 270 RSPFATHYVHAGMIGLNGEKMSKSRGNLVFVSRLRADRV------DPMAVRLGLMAGHYR 323 Query: 318 EPIDFTVQRLTEAE----ILLSKWPQTSTSKGI-IDPAVLSALYNDLNTVSAI 365 +T LT A+ + G+ + AV + L +DL+T AI Sbjct: 324 ADRTWTEDLLTVAQERLARWRRAAAAPAGPSGVELMSAVRARLADDLDTPGAI 376 >gi|170093199|ref|XP_001877821.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647680|gb|EDR11924.1| predicted protein [Laccaria bicolor S238N-H82] Length = 796 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 130/232 (56%), Gaps = 16/232 (6%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF 165 +F + RL P R T ++P+++ ++ II +G+AYEA + FDT + Sbjct: 270 KFFDEMARLKVREPDIVTRVTEYVPEIVAYVERIIQNGYAYEAEGSVYFDTLTFDGTDGH 329 Query: 166 SRRKIDEQKMGTR---------VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 + K++ G R + + +++P+DF LWK S P EP W SPWG GRPGWH Sbjct: 330 NYAKLEPWSKGNRELLEGGEGALSSRTGRRSPSDFALWKASKPGEPSWPSPWGPGRPGWH 389 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 IECS M+S G+ DIH GG DL FPHH+NE+AQ+ N ++H G L++EG Sbjct: 390 IECSVMASAIFGENIDIHSGGSDLAFPHHDNEMAQAEAYHNCSPWVNYFLHTGHLHIEGL 449 Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 KMSKS NFITI+E+L+ KF R +RLA L + +DF+ +T Sbjct: 450 KMSKSLKNFITIDEILQ--KFTPRQ-----LRLAFLTQLWNSKVDFSESLMT 494 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + TEF + +++ Y CGPTVYD +H+G+AR + D+L R++ Y+G Sbjct: 55 LRVYNSLTKTKTEFVPTNGRHVKWYNCGPTVYDASHMGHARNYVTQDILRRIMSDYFGYD 114 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +V N+TDIDDKIIERARQ H Sbjct: 115 -VHFVMNVTDIDDKIIERARQNH 136 >gi|270000778|gb|EEZ97225.1| hypothetical protein TcasGA2_TC011023 [Tribolium castaneum] Length = 730 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 131/232 (56%), Gaps = 21/232 (9%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PN 161 Q+F KD L L P R + +IP++I I II +G YEAN + FD ++ PN Sbjct: 211 QEFHKDMEALNILKPHVLTRVSEYIPEIIGYISRIISNGFGYEANGSVYFDVAAFDKQPN 270 Query: 162 ----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + + E + T ++ K +P DF LWKRS P EP W+SPWG+G Sbjct: 271 HYYAKLVPEAYGDTNSLQEGEGDL-TTADQRNEKHSPNDFALWKRSKPGEPAWDSPWGKG 329 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+S G DIH GG+DL FPHH+NEIAQS + ++H+G L Sbjct: 330 RPGWHIECSAMASTIFGDTLDIHTGGVDLKFPHHDNEIAQSEAHFGASEWVKYFLHSGHL 389 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + G KMSKS NF++I + L K+ R +R A L+ +R+ +D++ Sbjct: 390 TIAGCKMSKSLKNFVSIQDAL--AKYTARQ-----LRFAFLLHAWRDTLDYS 434 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R+ F+ I + Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 LKVFNSLTRQKEVFRPISGKKVTWYSCGPTVYDASHMGHARSYITFDILRRVLADYFGYD 79 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + +V NITDIDDKII+RARQ + Sbjct: 80 -IFFVMNITDIDDKIIKRARQNY 101 >gi|195150237|ref|XP_002016061.1| GL10698 [Drosophila persimilis] gi|194109908|gb|EDW31951.1| GL10698 [Drosophila persimilis] Length = 741 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVAFIQKIIDNGLAYAANNSVYFDVNGFDRKEKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWGRGR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGRGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K+++YN+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RPKLRLYNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILADYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII+RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIKRARQNH 101 >gi|189241753|ref|XP_968189.2| PREDICTED: similar to cysteinyl-tRNA synthetase [Tribolium castaneum] Length = 734 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 131/232 (56%), Gaps = 21/232 (9%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PN 161 Q+F KD L L P R + +IP++I I II +G YEAN + FD ++ PN Sbjct: 211 QEFHKDMEALNILKPHVLTRVSEYIPEIIGYISRIISNGFGYEANGSVYFDVAAFDKQPN 270 Query: 162 ----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + + E + T ++ K +P DF LWKRS P EP W+SPWG+G Sbjct: 271 HYYAKLVPEAYGDTNSLQEGEGDL-TTADQRNEKHSPNDFALWKRSKPGEPAWDSPWGKG 329 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+S G DIH GG+DL FPHH+NEIAQS + ++H+G L Sbjct: 330 RPGWHIECSAMASTIFGDTLDIHTGGVDLKFPHHDNEIAQSEAHFGASEWVKYFLHSGHL 389 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + G KMSKS NF++I + L K+ R +R A L+ +R+ +D++ Sbjct: 390 TIAGCKMSKSLKNFVSIQDAL--AKYTARQ-----LRFAFLLHAWRDTLDYS 434 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R+ F+ I + Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 LKVFNSLTRQKEVFRPISGKKVTWYSCGPTVYDASHMGHARSYITFDILRRVLADYFGYD 79 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + +V NITDIDDKII+RARQ + Sbjct: 80 -IFFVMNITDIDDKIIKRARQNY 101 >gi|299752108|ref|XP_001830705.2| cysteinyl-tRNA synthetase [Coprinopsis cinerea okayama7#130] gi|298409681|gb|EAU91074.2| cysteinyl-tRNA synthetase [Coprinopsis cinerea okayama7#130] Length = 820 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 156/309 (50%), Gaps = 48/309 (15%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F D +L + P R T+++P++I I II +G+AY + FD + Sbjct: 307 EFFSDMAKLNVVPPDVVTRVTDYVPEIINFIDRIIQNGYAYSVGGNVYFDIRAFNQAPGH 366 Query: 162 -YGSFSRRKIDEQKM---GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHI 217 YG + M G P HKK+P+DF LWK S P EP WESPWG GRPGWHI Sbjct: 367 QYGKLIPWNENHGGMDDAGDTAPAA-HKKSPSDFALWKASKPGEPFWESPWGPGRPGWHI 425 Query: 218 ECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRK 277 ECSAM++ LG+ DIH GG+DL+FPHH NE+AQS + + + +IH G L+++G K Sbjct: 426 ECSAMATAILGEKLDIHSGGIDLLFPHHTNELAQSEAYFKTDSWVDCFIHTGHLHIQGLK 485 Query: 278 MSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL--- 334 MSKS NFI+I ++L+ + A +RLA L+ + DF+ ++E+L Sbjct: 486 MSKSLKNFISIKDILQC-------YTADQLRLAFLLHPWHAKFDFS-DEFMKSEVLTLEA 537 Query: 335 -----------------SKWPQTSTSKGIIDP-----------AVLSALYNDLNTVSAIQ 366 S +P + G + A SAL N +++V A+ Sbjct: 538 FFANLFSRTRSLARAAQSSYPPPAQHFGAHEAVLRTQLEDAKVAFRSALANSIDSVGALN 597 Query: 367 ALHKLARES 375 L KL ++ Sbjct: 598 VLRKLTSQT 606 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ +YN+L + TE + ++ Y CGPTVYD +H+G+AR + DV+ R+L Y+G Sbjct: 87 KLLLYNSLTKSKTEVTSASARPLKWYSCGPTVYDTSHLGHARNYVTQDVMRRILTDYFGL 146 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV N+TDIDDKIIER RQ + Sbjct: 147 N-IQYVMNVTDIDDKIIERTRQHY 169 >gi|125807796|ref|XP_001360523.1| GA21073 [Drosophila pseudoobscura pseudoobscura] gi|122097947|sp|Q291L4|SYCC_DROPS RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|54635695|gb|EAL25098.1| GA21073 [Drosophila pseudoobscura pseudoobscura] Length = 741 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVAFIQKIIDNGLAYAANNSVYFDVNGFDRKEKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWGRGR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGRGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K+++YN+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RPKLRLYNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILADYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII+RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIKRARQNH 101 >gi|47213255|emb|CAF92916.1| unnamed protein product [Tetraodon nigroviridis] Length = 852 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ + +I +G+ YE+N + FDT+ Sbjct: 264 EEFHKDMEALNVLPPDVLTRVSEYVPEIVDFVAKVISNGYGYESNGSVYFDTAKFDASPQ 323 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +Y + +QK + KK+P DF LWK S P EP W+SPWG+G Sbjct: 324 HSYAKLVPEAVGDQKALQEGEGDLSVSAERLSEKKSPNDFALWKASKPGEPSWDSPWGKG 383 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG+ D+HGGG DL FPHH+NE+AQS + ++H G L Sbjct: 384 RPGWHIECSAMAGTVLGESMDVHGGGFDLRFPHHDNELAQSEAFFDNDHWVRYFLHTGHL 443 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI E L A +RLA LM +++ +D++ + A Sbjct: 444 TIAGCKMSKSLKNFITIKEALAKNT-------ARQLRLAFLMHSWKDTLDYSSNTMESA 495 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 30/41 (73%), Gaps = 1/41 (2%) Query: 45 RPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 R I FD+L R+LR Y+ + V Y NITDIDDKII+RARQ Sbjct: 112 RSYISFDILRRILRDYFKYE-VFYCMNITDIDDKIIKRARQ 151 >gi|71894372|ref|YP_278480.1| cysteinyl-tRNA synthetase [Mycoplasma synoviae 53] gi|71851160|gb|AAZ43769.1| cysteinyl-tRNA synthetase [Mycoplasma synoviae 53] Length = 406 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 129/431 (29%), Positives = 208/431 (48%), Gaps = 41/431 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVYD HIGN RP++ FD++ + RY +K ++ NITDIDDKII +A++ Sbjct: 2 LKIYVCGPTVYDELHIGNMRPILTFDLMLKAARYL--KKDFIFIHNITDIDDKIIFKAKE 59 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 ++ S + K +Q+++ + T T ++ + + + +A Sbjct: 60 QNISEK------ELAQKYSQKYLNHLKTFSVDTITKLEYVTKNLEYIESFLDKLYKRDNA 113 Query: 146 YEANNE-IIFDTS-SIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 Y N + F+ ++ NYG S + +D+ + K K N ADF LWK +T Sbjct: 114 YLIENSGLYFNVEKNLNNYGKISNQNLDDMHFDFDLNSKLQKYNKADFALWK-NTSEGIK 172 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKV-FDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 ++S +G+GRPGWH EC A+ G DIHGGG+DLIFPHHENE Q + + T Sbjct: 173 FDSKFGQGRPGWHTECVALIEKNFGDSQLDIHGGGVDLIFPHHENENIQYQALYQKDITK 232 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 W+ +G +NL KMSKS N I+++ LE ++ LM+ I+ Sbjct: 233 K-WLRSGQINLNNEKMSKSLQNIISVDAFLENN-------SGNTLKFIFLMSSLTANINL 284 Query: 323 TVQRLTEAEILLSKWPQTSTSKGI----IDPAVLS---ALYNDLNTVSAIQALHKLARES 375 +++A L K + S + I P +S +L+ + ++ L + + Sbjct: 285 NENLISDASNLDKKLIKLSFLAKVNNLEIKPCDVSKEMEFLFELSFSKFMFEVNALLKNA 344 Query: 376 TKN-----HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 KN + LL +FN LG K + I + ++ L++K + SAD Sbjct: 345 NKNDLEALNKLLFLFNT----LGFSYNKLDFSSEI-----QTYKKWKAALELKDYKSADL 395 Query: 431 IRKQLESKGFI 441 +R+ L K I Sbjct: 396 LREDLLKKNLI 406 >gi|20988543|gb|AAH30473.1| Cars protein [Mus musculus] Length = 671 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 144 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 203 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 204 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 263 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 264 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 323 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 324 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 375 >gi|116670715|ref|YP_831648.1| cysteinyl-tRNA synthetase [Arthrobacter sp. FB24] gi|310947173|sp|A0JWX8|MSHC_ARTS2 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|116610824|gb|ABK03548.1| Cysteine--tRNA ligase [Arthrobacter sp. FB24] Length = 426 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 124/426 (29%), Positives = 202/426 (47%), Gaps = 52/426 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIR-MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++I++T + + +D + + +YVCG T YD H+G+A + FD+L R R G Sbjct: 19 VRIFDT---AVGAYSTLDATGEQSLYVCGITPYDATHMGHAASYVAFDLLNRAWRD--GG 73 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 + V YV+N+TD+DD ++ERA + D + + + F D L LAP H Sbjct: 74 QRVAYVQNVTDVDDPLLERATAT--GVDWRD----LAASQIELFQTDMAALNVLAPDHYV 127 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDTSSIPNYGSFSR--------R 168 A IP+++ I+ ++ G AY E + ++ +D + + + ++ Sbjct: 128 GAVESIPEIVPAIERLLHLGLAYRVTGTPGEPDGDVYYDVEAASKHSAEAKDAWTLGSVS 187 Query: 169 KIDEQKMGTRV------PEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSA 221 + E +M P + K+ D +LW+ + EP W G GRPGWHIEC+ Sbjct: 188 GLSETEMLELFAERGGDPGRRGKRQALDPLLWRVARDGEPSWAGGELGSGRPGWHIECTV 247 Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 ++ YL F + GGG DLIFPHHE + + A + H G + L+G KMSKS Sbjct: 248 IAQKYLPAPFTVQGGGSDLIFPHHEMGAGHAYSLTGV-PLARHFAHAGMVGLDGEKMSKS 306 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS 341 GN + +++L + PA IRLA+L HYR +T +A+ L++W Sbjct: 307 KGNLVLVSKLRAAGEE-----PA-AIRLAILAHHYRTDWSWTEAGFAQAKTRLAEWRDAL 360 Query: 342 T-----SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH------DLLPIFNASAH 390 T S + + S L NDLN A+ A+ + A + + D + +A Sbjct: 361 TMAPGESAATLIAEMRSELANDLNAPGALAAVDRWAVAAKQQAGAGSPMDQALVSDAVNA 420 Query: 391 ILGIEV 396 +LG+E+ Sbjct: 421 LLGVEL 426 >gi|157821465|ref|NP_001099789.1| cysteinyl-tRNA synthetase, cytoplasmic [Rattus norvegicus] gi|149061784|gb|EDM12207.1| cysteinyl-tRNA synthetase (predicted), isoform CRA_b [Rattus norvegicus] Length = 748 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 221 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 280 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 281 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 RPGWHIECSAMAGSLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 401 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 87 YDVFYCMNITDIDDKIIRRARQNY 110 >gi|229820734|ref|YP_002882260.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Beutenbergia cavernae DSM 12333] gi|310947174|sp|C5BVB1|MSHC_BEUC1 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|229566647|gb|ACQ80498.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Beutenbergia cavernae DSM 12333] Length = 420 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 118/383 (30%), Positives = 180/383 (46%), Gaps = 46/383 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++++ +T ++T A MYVCG T YD H+G+A + FD+L R R Sbjct: 20 REVRVRDTATGELT--PAGHDGRASMYVCGITPYDSTHLGHANTYVSFDLLVRAWRD--A 75 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLACLA 118 VTYV+N+TD+DD ++ERA A + + + + F D L +A Sbjct: 76 GLAVTYVQNVTDVDDPLLERAA----------ATGVDWRQLAADQIELFHHDMVALRVVA 125 Query: 119 PTHQPRATNHIPQMIYLIQNIILHGHAYEANNE--------IIFDTSSIPNYGSFSRRKI 170 P H A +P ++ ++ ++ AY + S+ P +GS + Sbjct: 126 PEHYIGAVESVPDVVRAVERMLADRAAYRVGAAADGAGDGDVYAALSADPRFGSLG--SL 183 Query: 171 DEQKM----GTRV--PEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMS 223 DE +M G R P++ K+ P D +LW+ EP W GRGRPGWHIEC+ ++ Sbjct: 184 DEAEMLELFGERGGDPDRLGKQAPLDPLLWRVEREEEPSWPGESLGRGRPGWHIECATIA 243 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 + +LG FD+ GGG DL FPHHE + A +H G + +G KMSKS G Sbjct: 244 ARFLGVPFDVQGGGTDLEFPHHEMSESHLRVLTATAHPARAHVHGGMVAYQGHKMSKSRG 303 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----PQ 339 N + ++EL+ + +RL +L HY E ++ L AE L+ W Q Sbjct: 304 NLVFVSELVASGV------DPMAVRLVILAHHYAEDWEYEAGALGLAEERLATWRAALAQ 357 Query: 340 TSTSKGI-IDPAVLSALYNDLNT 361 S G + V +AL NDL+ Sbjct: 358 GSGPSGADVVAGVRAALANDLDA 380 >gi|307210717|gb|EFN87140.1| Cysteinyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator] Length = 729 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 133/428 (31%), Positives = 187/428 (43%), Gaps = 127/428 (29%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIV-------------FD 51 +++YN+L RK F + I Y CGPTVYD +H+G+AR I +D Sbjct: 20 LQLYNSLTRKKEVFVPQFGNRILWYSCGPTVYDASHMGHARSYISFDILRRVLSDYFGYD 79 Query: 52 VLY-------------RLLRYYYGEKCV---------------------TYVRNITDIDD 77 VLY R + Y EK V V ITD+D Sbjct: 80 VLYVMNITDIDDKIIKRARQNYLYEKYVEENHNLNTILDDAKQVMSNFENTVHTITDLDK 139 Query: 78 K------------IIE------RARQEHPSIPINDAI-----------------SIITSK 102 K +IE R + EH + + + S IT Sbjct: 140 KCMLENMLSKLTKVIENLEKAVREKDEHEIAVLQELLLKEVKDLLSDWLDQLKGSTITEH 199 Query: 103 NT---------QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII 153 + +F KD L L P+ R + ++P++I +Q II +G AY +N + Sbjct: 200 SIFNKLSKHWESEFHKDMDALNVLKPSVLTRVSEYVPEIIAFVQQIIDNGLAYGSNGSVY 259 Query: 154 FDTSSIPNYGSFSRRKIDEQK---MGTRVPEKY---------------HKKNPADFILWK 195 FD S K D+Q+ VPE Y K++ DF LWK Sbjct: 260 FDVS-----------KFDKQEKHFYAKLVPEAYGDTSSDLSVTEDKLSEKRSLTDFALWK 308 Query: 196 RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 S EP W+SPWG+GRPGWHIECS M+S G+ DIH GG+DL FPHH+NE+AQ+ Sbjct: 309 SSKAGEPWWDSPWGKGRPGWHIECSVMASVICGENLDIHTGGVDLKFPHHDNELAQAEAY 368 Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH 315 ++H+G L + G KMSKS NF+TI + L KK R +RLA L+ Sbjct: 369 FDNSHWVKYFLHSGHLTIAGCKMSKSLKNFVTIQDAL--KKHSARQ-----LRLAFLLHS 421 Query: 316 YREPIDFT 323 +++ +D++ Sbjct: 422 WKDTLDYS 429 >gi|149061783|gb|EDM12206.1| cysteinyl-tRNA synthetase (predicted), isoform CRA_a [Rattus norvegicus] Length = 831 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGSLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|213401855|ref|XP_002171700.1| cysteinyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] gi|211999747|gb|EEB05407.1| cysteinyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] Length = 766 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 130/233 (55%), Gaps = 20/233 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSF 165 F KD L L PT R + ++P+++ ++ II G+AY + + FDT + G F Sbjct: 232 FNKDMRALNVLPPTVVTRVSEYMPEIVDFVKKIIERGYAYAVEDGSVYFDTEAFSAAGHF 291 Query: 166 ----------SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215 +R IDE + + + KK P DF LWK S EP W+SPWG+GRPGW Sbjct: 292 YAKIEPWNKNNRELIDEGEGA--LAARTGKKRPGDFALWKASKSGEPFWDSPWGKGRPGW 349 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIECS M+ LG DIH GG+DL FPHH+NE+AQS + N + H G L++EG Sbjct: 350 HIECSVMAGTILGSNIDIHSGGIDLAFPHHDNELAQSEAFFDCPQWINYFFHMGHLHIEG 409 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 +KMSKS NFITI E+L KK+ R +RLA L+ + +DF LT Sbjct: 410 QKMSKSLKNFITIKEIL--KKYTARQ-----LRLAFLLQQWNTQMDFKDALLT 455 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 56/80 (70%), Gaps = 1/80 (1%) Query: 8 YNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVT 67 +N++ T F A + ++ Y CGPTVYD +H+G+AR + D+L R+L+ Y+ +T Sbjct: 24 FNSMTHTKTPFIAPNGHSLTWYCCGPTVYDASHMGHARNYVTTDILRRILQNYFNYD-IT 82 Query: 68 YVRNITDIDDKIIERARQEH 87 +V+N+TDIDDKII RARQ++ Sbjct: 83 FVQNVTDIDDKIIVRARQKY 102 >gi|281425990|ref|ZP_06256903.1| cysteine--tRNA ligase [Prevotella oris F0302] gi|281399883|gb|EFB30714.1| cysteine--tRNA ligase [Prevotella oris F0302] Length = 421 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 134/414 (32%), Positives = 197/414 (47%), Gaps = 51/414 (12%) Query: 76 DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 DDKI ++AR E P+ I T ++ L L P+ +P AT HI + L Sbjct: 9 DDKIEKKARLEQLE-PME-----IAQYYTNRYHAAMEALNVLPPSIEPHATGHIIEQEEL 62 Query: 136 IQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKIDEQKMGTRVPEKY-HKKNPADF 191 ++ I+ +G+AYE+N I FD YG S R + + +R + KKN DF Sbjct: 63 VKEILKNGYAYESNGSIYFDVEKYDKEHKYGILSGRNLTDMINNSRELQGVGEKKNQVDF 122 Query: 192 ILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 LWK++ P W SPW G PGWH EC+AM YLG FDIHGGG+DLIFPHHE EIA Sbjct: 123 ALWKKAQPEHIMRWPSPWSIGFPGWHCECTAMGRKYLGSHFDIHGGGMDLIFPHHECEIA 182 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG-GRSWPAPVIRL 309 Q+ A + ++ + W+HN + + G+KM KS GNFIT+ + +++ IR Sbjct: 183 QA-VASQGDQMVHYWMHNNMITINGQKMGKSLGNFITLEQFFTGNHASLTQAYTPMTIRF 241 Query: 310 AMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIIDPAVLS------ 353 +L HYR +DF+ +RL A L + P +S D V + Sbjct: 242 FILSAHYRGTVDFSNEALEAAQKGYERLMNAFDDLERVPVSSHCDAKTDKFVRTFRQRCY 301 Query: 354 -ALYNDLNTVSAIQALHKLAR--ESTKNH-------------DLLPIFNASAHILGIEVC 397 A+ +DL T I L + + +H D + +F + +LG++ Sbjct: 302 EAMNDDLQTPLVISYLFEACHLINTLLDHKAEICADCLKELGDAMKLF--AFDLLGLKNE 359 Query: 398 KEHLNKNISIAIEKLVQERLILLKM----KKFSSADYIRKQLESKGFILEDYKN 447 K N A K+V L L K ++++D IR L + GF ++D K+ Sbjct: 360 KGDNNVAREEAYGKVVDMVLDLRAKAKADKDWTTSDKIRDALAAAGFEVKDTKD 413 >gi|289803124|ref|ZP_06533753.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 294 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 157/301 (52%), Gaps = 39/301 (12%) Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FPH Sbjct: 8 KRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPH 67 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + A Sbjct: 68 HENEIAQSTCAHDGEYV-NYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYDA 119 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA----EILLSKWPQTSTSKG-----IIDPAVLSAL 355 +R ++ HYR ++++ + L +A E L + T S + + A+ Sbjct: 120 ETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEAM 179 Query: 356 YNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISI------ 407 +D NT A L +ARE K D+ ++H+ I L + + Sbjct: 180 NDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSGA 239 Query: 408 --------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+Q+RL K K +++AD R +L G ILED G + T W++ Sbjct: 240 QADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWRR 293 Query: 460 K 460 K Sbjct: 294 K 294 >gi|187468988|gb|AAI66707.1| Cars protein [Rattus norvegicus] Length = 655 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 221 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 280 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 281 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 RPGWHIECSAMAGSLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 401 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 87 YDVFYCMNITDIDDKIIRRARQNY 110 >gi|74183161|dbj|BAE22530.1| unnamed protein product [Mus musculus] Length = 831 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|195122821|ref|XP_002005909.1| GI18835 [Drosophila mojavensis] gi|193910977|gb|EDW09844.1| GI18835 [Drosophila mojavensis] Length = 740 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 136/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 +F D L L P R + ++PQ++ IQ II +G AYEAN + FD + Sbjct: 214 KFHNDMKSLNILPPDVLTRVSEYVPQIVAFIQRIIDNGLAYEANGSVYFDVNGFDKRDKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + + E + K++ DF LWK S EP W+SPWGRGR Sbjct: 274 HYAKLVPEAYGDTASLQEGEGDLSVTEDRLSEKRSANDFALWKASKAGEPWWDSPWGRGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G +FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGSIFDIHTGGVDLKFPHHDNELAQSEAAFGESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 46/84 (54%), Positives = 63/84 (75%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YN+L R+ EF +D +N++ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 19 QLKLYNSLTRQKEEFVPLDGNNVKWYSCGPTVYDASHMGHARSYISFDILRRILADYFGY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII+RARQ H Sbjct: 79 N-IHYVMNITDIDDKIIKRARQYH 101 >gi|157074020|ref|NP_001096719.1| cysteinyl-tRNA synthetase, cytoplasmic [Bos taurus] gi|133777443|gb|AAI14706.1| CARS protein [Bos taurus] gi|296471434|gb|DAA13549.1| cysteinyl-tRNA synthetase [Bos taurus] Length = 832 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT N Sbjct: 306 EFHKDMEALNVLPPDVLTRVSEYVPEIVDFVQKIVDNGYGYASNGSVYFDTVKFANTEGH 365 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 366 SYGKLVPEAVGDQKALHEGEGDLSVSAERLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 425 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 426 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 485 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 486 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSANTMESA 536 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R+ F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 112 QLRLYNSLTRRKDVFVPQDGRRVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-K 170 Query: 64 KCVTYVRNITDIDDKIIERARQ 85 V Y NITDIDDKII+RARQ Sbjct: 171 FDVFYCMNITDIDDKIIKRARQ 192 >gi|148747198|ref|NP_038770.3| cysteinyl-tRNA synthetase, cytoplasmic [Mus musculus] gi|47117033|sp|Q9ER72|SYCC_MOUSE RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|11191806|emb|CAC16403.1| CysRS protein [Mus musculus] gi|32493323|gb|AAH54717.1| Cysteinyl-tRNA synthetase [Mus musculus] gi|37748375|gb|AAH58954.1| Cysteinyl-tRNA synthetase [Mus musculus] Length = 831 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|26328991|dbj|BAC28234.1| unnamed protein product [Mus musculus] Length = 831 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDKEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|11191800|emb|CAC16398.1| Cysteinyl-tRNA-synthetase [Mus musculus domesticus] gi|148686272|gb|EDL18219.1| cysteinyl-tRNA synthetase, isoform CRA_a [Mus musculus] Length = 831 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|26332072|dbj|BAC29766.1| unnamed protein product [Mus musculus] gi|74225237|dbj|BAE31556.1| unnamed protein product [Mus musculus] Length = 748 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 221 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 280 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 281 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 401 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 87 YDVFYCMNITDIDDKIIRRARQNY 110 >gi|148686274|gb|EDL18221.1| cysteinyl-tRNA synthetase, isoform CRA_c [Mus musculus] Length = 748 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 221 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 280 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 281 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 401 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 87 YDVFYCMNITDIDDKIIRRARQNY 110 >gi|26346422|dbj|BAC36862.1| unnamed protein product [Mus musculus] Length = 649 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 221 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 280 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 281 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 401 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 87 YDVFYCMNITDIDDKIIRRARQNY 110 >gi|195488337|ref|XP_002092271.1| GE11760 [Drosophila yakuba] gi|194178372|gb|EDW91983.1| GE11760 [Drosophila yakuba] Length = 741 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/256 (38%), Positives = 136/256 (53%), Gaps = 39/256 (15%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF 165 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + F Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDNGLAYAANNSVYFDVNG------F 267 Query: 166 SRRKIDEQKMGTRVPEKY---------------------HKKNPADFILWKRSTPMEPGW 204 +R D+ VPE Y K++ DF LWK S EP W Sbjct: 268 DKR--DKHHYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWW 325 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 +SPWG+GRPGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + Sbjct: 326 DSPWGKGRPGWHIECSAMASDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKY 385 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF-- 322 ++H G L + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ Sbjct: 386 FLHTGHLTIAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSE 438 Query: 323 -TVQRLTEAEILLSKW 337 T++ T+ E L+++ Sbjct: 439 NTMEMATQYEKFLNEF 454 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K+K++N+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILSDYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIRRARQNH 101 >gi|302782427|ref|XP_002972987.1| hypothetical protein SELMODRAFT_97996 [Selaginella moellendorffii] gi|300159588|gb|EFJ26208.1| hypothetical protein SELMODRAFT_97996 [Selaginella moellendorffii] Length = 457 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 11/237 (4%) Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159 S+ ++F +D L P R T++I +++ ++ II +G+AYE + + FDT + Sbjct: 187 ASRYEKEFFEDMKSLGVKPPDVITRVTDYISKIVKYVETIIANGYAYEVDGSVYFDTEAF 246 Query: 160 PN---YGSFSRRKIDEQKMGTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + + + + + +KKN DF LWK S EP W+SPWG GRP Sbjct: 247 NTKHTYGKLNPAAVGCVGLASESETNFKTRNKKNNNDFALWKESKVGEPFWDSPWGPGRP 306 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+S +G++ DIH GG DL FPHH+NE+AQ+ + N + H+G L++ Sbjct: 307 GWHIECSAMASDVIGEIIDIHSGGADLKFPHHDNELAQAEAYHSCSQWVNYFFHSGHLSV 366 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NF TI + LE + +RL L+ + +P+DF+ ++EA Sbjct: 367 NGLKMSKSLKNFTTIRQALEELHYSSSQ-----LRLLFLLHQWDKPMDFSASAMSEA 418 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 48/62 (77%), Gaps = 1/62 (1%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 + Y+CGPTVYD +HIG+AR + FD+L R+L ++G V YV N+TD+DDKII+RAR+ Sbjct: 23 VTWYICGPTVYDSSHIGHARNYVTFDILRRILEDFFGYD-VFYVMNVTDVDDKIIKRARR 81 Query: 86 EH 87 +H Sbjct: 82 DH 83 >gi|157865847|ref|XP_001681630.1| cysteinyl-tRNA synthetase [Leishmania major strain Friedlin] gi|68124928|emb|CAJ02484.1| putative cysteinyl-tRNA synthetase [Leishmania major strain Friedlin] Length = 784 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 102 KNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-- 159 K + F +D RL P R T ++PQ++ +Q II +G AY + FDT + Sbjct: 238 KYERAFFEDMQRLGIREPDIVTRVTEYVPQVVEFVQKIIDNGFAYAGETSVFFDTEAYIR 297 Query: 160 -----PNYGSFSRRKIDEQKM--GTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWG 209 P R E +M G V K K++P DF LWK S P EP W SPWG Sbjct: 298 AGHDYPKLKPGGDRNTTEDEMAEGEGVLSKGIEGEKRSPNDFALWKFSKPGEPRWPSPWG 357 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECS M+S LG+ DIH GG DL FPHH+NE AQS + + N ++H G Sbjct: 358 EGRPGWHIECSVMASDILGENMDIHSGGWDLKFPHHDNECAQSEACNLHSQWVNYFLHCG 417 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L+++G KMSKS NFITI + L+ R+ +RL L + +P++F+ Q L E Sbjct: 418 HLHIKGLKMSKSLKNFITIRQALDELGVTART-----MRLLFLANPWNKPMNFSDQSLDE 472 Query: 330 AE 331 A+ Sbjct: 473 AK 474 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ N+L + +F D +R Y CGPTVYD +H+G+AR + FD++ R++ Y+G Sbjct: 38 LKVMNSLTETLEDFAPRDGRVVRWYTCGPTVYDLSHMGHARAYLTFDIIRRIMEDYFG-Y 96 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 97 SVIYQMNITDIDDKIIKRAR 116 >gi|326436995|gb|EGD82565.1| cysteinyl-tRNA synthetase [Salpingoeca sp. ATCC 50818] Length = 708 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 133/245 (54%), Gaps = 17/245 (6%) Query: 96 ISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155 S ++ K +F +D L AP R T +P++ +Q II +G+ YEAN + FD Sbjct: 186 FSSVSRKWEAEFHRDMNALNVEAPDVLKRVTECVPEIAAFVQRIIDNGYGYEANGSVYFD 245 Query: 156 T-----SSIPNYGSF-----SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 SS NY + K E+ G K++ +DF LWK S P EP W Sbjct: 246 VAAFRGSSEHNYPKLLPEAAANAKALEEGEGALSSGAGDKRSQSDFALWKASKPGEPAWP 305 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 SPWG+GRPGWHIECS M+S L DIH GG+DL FPHH+NE AQS +K N + Sbjct: 306 SPWGQGRPGWHIECSVMASSVLNDNMDIHSGGVDLKFPHHDNECAQSEAYYGNDKWVNYF 365 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 IH+G L++EG KMSKS NFITI E L+ + A IRL L+ +++ +D++ Sbjct: 366 IHSGHLHIEGHKMSKSLKNFITIKEALD-------QYTARQIRLMFLLHNWKATLDYSSH 418 Query: 326 RLTEA 330 + A Sbjct: 419 SMMTA 423 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++N+ R+ F + + + Y CGPTVYD +H+G+AR I FD++ R+LR Y+ Sbjct: 8 QLQLFNSYTRQKEVFVPRERNRVTWYGCGPTVYDASHMGHARAYITFDIMRRVLRDYFKY 67 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 C YV NITD+DDKII RARQ H Sbjct: 68 DC-EYVMNITDLDDKIILRARQNH 90 >gi|322489357|emb|CBZ24616.1| putative cysteinyl-tRNA synthetase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 784 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 102 KNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-- 159 K + F +D RL P R T ++PQ++ +Q II +G AY + FDT + Sbjct: 238 KYERAFFEDMQRLGIREPDIVTRVTEYVPQVVEFVQKIIDNGFAYVGETSVFFDTEAYIR 297 Query: 160 -----PNYGSFSRRKIDEQKM--GTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWG 209 P R E +M G V K K++P DF LWK S P EP W SPWG Sbjct: 298 AGHDYPKLKPGGDRNTTEDEMAEGEGVLSKGVEGEKRSPNDFALWKFSKPGEPRWSSPWG 357 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECS M+S LG+ DIH GG DL FPHH+NE AQS + + N ++H G Sbjct: 358 EGRPGWHIECSVMASDILGENMDIHSGGWDLKFPHHDNECAQSEACNLHSQWVNYFLHCG 417 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L+++G KMSKS NFITI + L+ R+ +RL L + +P++F+ Q L E Sbjct: 418 HLHIKGLKMSKSLKNFITIRQALDELGVTART-----MRLLFLANPWNKPMNFSDQSLDE 472 Query: 330 AE 331 A+ Sbjct: 473 AK 474 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ N+L + +F D +R Y CGPTVYD +H+G+AR + FD++ R++ Y+G Sbjct: 38 LKVMNSLTESLEDFAPRDGRVVRWYTCGPTVYDLSHMGHARAYLTFDIIRRIMEDYFG-Y 96 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 97 SVIYQVNITDIDDKIIKRAR 116 >gi|195334811|ref|XP_002034070.1| GM21666 [Drosophila sechellia] gi|194126040|gb|EDW48083.1| GM21666 [Drosophila sechellia] Length = 741 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDNGLAYAANNSVYFDVNGFDKREKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWG+GR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+K++N+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 19 KLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILSDYFGY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII RARQ H Sbjct: 79 N-IHYVMNITDIDDKIIRRARQNH 101 >gi|302805410|ref|XP_002984456.1| hypothetical protein SELMODRAFT_180921 [Selaginella moellendorffii] gi|300147844|gb|EFJ14506.1| hypothetical protein SELMODRAFT_180921 [Selaginella moellendorffii] Length = 450 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 11/237 (4%) Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159 S+ ++F +D L P R T++I +++ ++ II +G+AYE + + FDT + Sbjct: 180 ASRYEKEFFEDMKSLGVKPPDVITRVTDYISKIVKYVETIIANGYAYEVDGSVYFDTEAF 239 Query: 160 PN---YGSFSRRKIDEQKMGTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + + + + + +KKN DF LWK S EP W+SPWG GRP Sbjct: 240 NTKHTYGKLNPAAVGCVGLASESETNFKTRNKKNNNDFALWKESKVGEPFWDSPWGPGRP 299 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+S +G++ DIH GG DL FPHH+NE+AQ+ + N + H+G L++ Sbjct: 300 GWHIECSAMASDVIGEIIDIHSGGADLKFPHHDNELAQAEAYHSCSQWVNYFFHSGHLSV 359 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NF TI + LE + +RL L+ + +P+DF+ ++EA Sbjct: 360 NGLKMSKSLKNFTTIRQALEELHYSSSQ-----LRLLFLLHQWDKPMDFSASAMSEA 411 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 48/62 (77%), Gaps = 1/62 (1%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 + Y+CGPTVYD +HIG+AR + FD+L R+L ++G V YV N+TD+DDKII+RAR+ Sbjct: 16 VTWYICGPTVYDSSHIGHARNYVTFDILRRILEDFFGYD-VFYVMNVTDVDDKIIKRARR 74 Query: 86 EH 87 +H Sbjct: 75 DH 76 >gi|294657639|ref|XP_459935.2| DEHA2E14476p [Debaryomyces hansenii CBS767] gi|199432842|emb|CAG88179.2| DEHA2E14476p [Debaryomyces hansenii] Length = 780 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 26/265 (9%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSI---P 160 ++F D RL L P+ R + +IP +I ++ II +G AY + + FDT+ P Sbjct: 250 KKFNDDMGRLNVLPPSITTRVSEYIPDVIEFVEKIITNGFAYATKDGSVYFDTAKFENDP 309 Query: 161 NYGSFSRRKIDEQKM-------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 N+ + ++ M G+ + KKN ADF LWK S P EP W S WG GRP Sbjct: 310 NHDYAKLQPWNKGDMSLINDGEGSLSTGQDTKKNAADFALWKGSKPGEPSWPSKWGEGRP 369 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++HNG L++ Sbjct: 370 GWHIECSVMASDITGQTMDIHSGGVDLCFPHHDNELAQSEAYFDNKQWVNYFMHNGHLHI 429 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 +G+KMSKS NFITI E L F R +RL ++++ +PIDF + E Sbjct: 430 QGQKMSKSLKNFITIEEAL--NDFTSRQ-----LRLVFALSYWEKPIDFKDSLIKE---- 478 Query: 334 LSKWPQTSTSKGIIDPAVLSALYND 358 + W ++S SK + AL ND Sbjct: 479 VKSW-ESSVSKFF---TTVRALNND 499 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L R EF + ++I Y CGPTVYD +H+G+AR + D+ R+L+ Y+G Sbjct: 43 LHIYNSLTRSKDEFIPLRNNHITWYCCGPTVYDHSHMGHARNYVSTDICRRILQDYFGYN 102 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +++N+TDIDDKII ARQE+ Sbjct: 103 -VKFIQNVTDIDDKIIIAARQEY 124 >gi|295666742|ref|XP_002793921.1| cysteinyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01] gi|226277574|gb|EEH33140.1| cysteinyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01] Length = 820 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 177/363 (48%), Gaps = 58/363 (15%) Query: 67 TYVRNITDI-----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 T+ +N+ D+ D R E SI + +T +F+KD L L P Sbjct: 233 TFYKNVQDVLLEHLDSLYGSSIRGEDRSI-----FTKLTKTYEDRFMKDIRDLNVLDPDA 287 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKID 171 R T ++P+++ ++ I+ H AY ++ + FD ++ G S++R K+ Sbjct: 288 VTRVTEYMPEIVQFVERIVQHKFAYVTSDGSVYFDITAFEASGNSYARLEPWNRNDTKLQ 347 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G + K++PADF LWK S EP W SPWG GRPGWHIECSAM+S LGK Sbjct: 348 AEGEGALINRTTEKRSPADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQM 407 Query: 232 DIHGGGLDLIFPHHENEIAQS-------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 DIH GG+DL FPHH+NE+AQS C D N ++H G L+++G KMSKS N Sbjct: 408 DIHSGGIDLAFPHHDNELAQSEAYWHENCAHDHW---VNYFLHMGHLSIQGSKMSKSLKN 464 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------- 337 F TI E L+ + RS +R+ L+ +++ I+ T + K Sbjct: 465 FTTIREALDKGDWTPRS-----LRIVFLLGGWKDGIEITEDLVKAGNAWEEKANNFFINA 519 Query: 338 ----PQTSTSKGIIDPAVLSAL-------YNDL----NTVSAIQALHKL-ARESTKNHDL 381 QT++ G D + +AL Y +L NT A+ A+ +L ++ + N Sbjct: 520 RDSVAQTNSDAGSTDDTLATALKSAQDAVYQNLCDSFNTAGAMYAISELISKYNISNKST 579 Query: 382 LPI 384 LP+ Sbjct: 580 LPV 582 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DPS + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPSGRKVTWYACGPTVYDDAHLGHARNYVSNDILRRIMRDYFN 85 Query: 63 EKCVTYVRNITDIDDKI 79 V ++ NITD+DDK+ Sbjct: 86 FD-VQFIMNITDVDDKV 101 >gi|171682892|ref|XP_001906389.1| hypothetical protein [Podospora anserina S mat+] gi|170941405|emb|CAP67056.1| unnamed protein product [Podospora anserina S mat+] Length = 843 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 128/240 (53%), Gaps = 21/240 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + + F D L L PT R T ++PQ++ ++ II G AYEA+ + FD + Sbjct: 248 LTQRMEKAFNDDMAALNVLEPTAVTRVTEYVPQIVSFVEQIIQKGFAYEADGSVYFDIGA 307 Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKY----------HKKNPADFILWKRSTPMEPGWESPW 208 G+ R E + + E+ KK ADF LWKRS P EP W SPW Sbjct: 308 FEKAGNTYARLRPESRNDKALQEEGEGSLSKSSGGQKKRDADFALWKRSKPGEPYWPSPW 367 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-----CCADRIEKTAN 263 G+GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS C N Sbjct: 368 GQGRPGWHIECSVMASDKLGDNMDIHSGGIDLAFPHHDNELAQSEAFFHQCGKGEHTWVN 427 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T ++ A +R+ LM + + ++ + Sbjct: 428 YFLHMGHLSIAGSKMSKSLKNFQTIQDALAT------TYTARNMRIVFLMGRWNDGVEIS 481 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I Y CGPT YD +H+G+AR + D++ R+ + Y+G + V +V N TD+DDKII +AR+ Sbjct: 61 ISWYACGPTTYDLSHLGHARNYLSNDIIRRIFQDYFGYE-VNFVMNYTDVDDKIIIKARR 119 Query: 86 E 86 + Sbjct: 120 Q 120 >gi|195583830|ref|XP_002081719.1| GD11166 [Drosophila simulans] gi|194193728|gb|EDX07304.1| GD11166 [Drosophila simulans] Length = 741 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDNGLAYAANNSVYFDVNGFDKREKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWG+GR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSAAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K+K++N+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILSDYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIRRARQNH 101 >gi|73982653|ref|XP_851224.1| PREDICTED: similar to cysteinyl-tRNA synthetase isoform c isoform 2 [Canis familiaris] Length = 831 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSI 159 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT S Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTVKFASSER 363 Query: 160 PNYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + Y CGPTVYD +H+G+AR I FD+L R+LR Y+G Sbjct: 111 KLRLYNSLTRNKDVFIPQHGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYFGY 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITD+DDKII+RARQ + Sbjct: 171 D-VFYCMNITDVDDKIIKRARQNY 193 >gi|73982657|ref|XP_533205.2| PREDICTED: similar to cysteinyl-tRNA synthetase isoform b isoform 1 [Canis familiaris] Length = 748 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSI 159 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT S Sbjct: 221 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTVKFASSER 280 Query: 160 PNYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 281 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 401 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + Y CGPTVYD +H+G+AR I FD+L R+LR Y+G Sbjct: 28 KLRLYNSLTRNKDVFIPQHGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYFGY 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITD+DDKII+RARQ + Sbjct: 88 D-VFYCMNITDVDDKIIKRARQNY 110 >gi|71402719|ref|XP_804237.1| cysteinyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] gi|70867098|gb|EAN82386.1| cysteinyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 785 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/330 (35%), Positives = 162/330 (49%), Gaps = 54/330 (16%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------- 159 F +D RL P R T ++PQ++ IQ I+ +G AY + I FDT++ Sbjct: 246 FFEDMRRLGVRDPDVVSRVTEYVPQVVDFIQKIMDNGFAYRGTSSIFFDTAAFLRAGHDY 305 Query: 160 PNYGSFSRR--------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 P S R ++ E + V K+N DF LWK S P EP W SPWG G Sbjct: 306 PKLKPVSERGENDATEAEMAEGEGALTVGVAGEKRNANDFALWKFSKPGEPRWPSPWGAG 365 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG D+H GG DL FPHH+NE AQS + N ++H G L Sbjct: 366 RPGWHIECSVMASDILGTNIDVHSGGWDLKFPHHDNECAQSEACHMQHQWINYFLHCGHL 425 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA- 330 +++G KMSKS NFITI + L+ R V+RL L H+ +P++F+ Q + EA Sbjct: 426 HIKGLKMSKSLKNFITIRQALDELDVTPR-----VMRLLFLANHWGKPMNFSDQSIEEAK 480 Query: 331 -------------EILLSK--WPQTSTSKGIID-------------PAVLSALYNDLNTV 362 +I+L K W +T +G+ D AV AL N+ +T Sbjct: 481 ERERVLRAFFGSVDIVLRKDNWGKT---QGLNDHDRRLQETWLTAENAVHGALQNNFDTP 537 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHIL 392 +A+ ++ L NH LL SA ++ Sbjct: 538 AAMDSVMGLV--GATNHYLLSGERPSATLV 565 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++ N+L + F + +R Y CGPTVY+ +H+G+AR + FD+L R++ Y+G Sbjct: 37 KGLRVLNSLTESVEPFAPREGRLVRWYACGPTVYELSHMGHARAYLTFDILRRIMEDYFG 96 Query: 63 EKCVTYVRNITDIDDKIIERAR 84 + V Y NITDIDDKII+RAR Sbjct: 97 YQVV-YQMNITDIDDKIIKRAR 117 >gi|195028283|ref|XP_001987006.1| GH21680 [Drosophila grimshawi] gi|193903006|gb|EDW01873.1| GH21680 [Drosophila grimshawi] Length = 743 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 135/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 +F D L L P R + ++PQ++ IQ II + AYEAN + FD + Sbjct: 215 KFHNDMKSLNILPPDVLTRVSEYVPQIVEFIQRIIDNKLAYEANGSVYFDVNGFDKREKH 274 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++P DF LWK S EP W+SPWGRGR Sbjct: 275 HYAKLVPEAYGDTQSLQEGEGDLSVTEERLSEKRSPNDFALWKTSKAGEPWWDSPWGRGR 334 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 335 PGWHIECSAMASDIFGSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 394 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NFITI E L TK A +RLA L+ +++ +D+ T++ T+ Sbjct: 395 IAGCKMSKSLKNFITIQEAL-TKH------SATQLRLAFLLHSWKDTLDYSENTMEMATQ 447 Query: 330 AEILLSKW 337 E L+++ Sbjct: 448 FEKFLNEF 455 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R+ F ++ +N++ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 QLRLYNSLTRQKETFVPLEGNNVKWYSCGPTVYDASHMGHARSYISFDILRRILANYFGY 79 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII+RARQ H Sbjct: 80 N-IQYVMNITDIDDKIIKRARQYH 102 >gi|225683481|gb|EEH21765.1| cysteinyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03] Length = 792 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/360 (32%), Positives = 174/360 (48%), Gaps = 52/360 (14%) Query: 67 TYVRNITDI-----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 T+ +N+ D+ D R E SI + +T +F+KD L L P Sbjct: 195 TFYKNVQDVLLEHLDSLYGSSIRGEDRSI-----FTKLTKTYEDRFMKDIRDLNVLDPDA 249 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKID 171 R T ++P+++ ++ I+ H AY ++ + FD ++ G S++R K+ Sbjct: 250 VTRVTEYMPEIVQFVERIVQHKFAYVTSDGSVYFDITAFEASGNSYARLEPWNRNDTKLQ 309 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G + K++PADF LWK S EP W SPWG GRPGWHIECSAM+S LGK Sbjct: 310 AEGEGALINRTTEKRSPADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQM 369 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI----HNGFLNLEGRKMSKSNGNFIT 287 DIH GG+DL FPHH+NE+AQS N W+ H G L+++G KMSKS NF T Sbjct: 370 DIHSGGIDLAFPHHDNELAQSEAYWHENSAQNHWVNYFLHMGHLSIQGSKMSKSLKNFTT 429 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------- 337 I E L+ + RS +R+ L+ +++ I+ T + K Sbjct: 430 IREALDKGDWNPRS-----LRIVFLLGGWKDGIEITEDLVKAGNAWEEKANNFFINARDS 484 Query: 338 -PQTSTSKGIIDPAVLSAL-------YNDL----NTVSAIQALHKL-ARESTKNHDLLPI 384 Q ++ G D + +AL Y +L NT A+ A+ +L ++ + N LP+ Sbjct: 485 VAQANSDAGSTDDTLATALKSAQDAVYQNLCDSFNTAGAMHAISELISKYNISNKSTLPV 544 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DPS + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPSGRKVTWYACGPTVYDDAHLGHARNYVSNDILRRIMRDYFN 85 Query: 63 EKCVTYVRNITDIDDKI 79 V ++ NITD+DDK+ Sbjct: 86 FD-VQFIMNITDVDDKV 101 >gi|301791662|ref|XP_002930799.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 2 [Ailuropoda melanoleuca] Length = 832 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--- 161 ++F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 305 EEFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFASSER 364 Query: 162 --YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 365 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 424 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 425 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 484 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 485 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 536 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + Y CGPTVYD +H+G+AR + FD+L R+LR Y+G Sbjct: 112 KLRLYNSLTRSKDVFIPQHGKKVMWYCCGPTVYDASHMGHARSYVSFDILRRVLRGYFGY 171 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITD+DDKII RARQ + Sbjct: 172 D-VLYCMNITDVDDKIIRRARQNY 194 >gi|321399071|emb|CBZ08414.1| putative cysteinyl-tRNA synthetase [Leishmania infantum JPCM5] gi|322497350|emb|CBZ32425.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 784 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 102 KNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-- 159 K + F +D RL P R T ++PQ++ +Q II +G AY + FDT + Sbjct: 238 KYERAFFEDMQRLGIREPDIVTRVTEYVPQVVEFVQKIIDNGFAYVGETSVFFDTEAYIR 297 Query: 160 -----PNYGSFSRRKIDEQKM--GTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWG 209 P R E +M G V K K++P DF LWK S P EP W SPWG Sbjct: 298 AGHDYPKLKPGGDRNTTEDEMAEGEGVLSKGIEGEKRSPNDFALWKFSKPGEPRWPSPWG 357 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECS M+S LG+ DIH GG DL FPHH+NE AQS + + N ++H G Sbjct: 358 EGRPGWHIECSVMASDILGENMDIHSGGWDLKFPHHDNECAQSEACNLHSQWVNYFLHCG 417 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L+++G KMSKS NFITI + L+ R+ +RL L + +P++F+ Q L E Sbjct: 418 HLHIKGLKMSKSLKNFITIRQALDELGVTART-----MRLLFLANPWNKPMNFSDQSLDE 472 Query: 330 AE 331 A+ Sbjct: 473 AK 474 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ N+L + +F D +R Y CGPTVYD +H+G+AR + FD++ R++ Y+G Sbjct: 38 LKVMNSLTETLEDFAPRDGRVVRWYTCGPTVYDLSHMGHARAYLTFDIIRRVMEDYFG-Y 96 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 97 SVIYQMNITDIDDKIIKRAR 116 >gi|301791660|ref|XP_002930798.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 1 [Ailuropoda melanoleuca] Length = 831 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--- 161 ++F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 304 EEFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFASSER 363 Query: 162 --YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 483 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 484 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + Y CGPTVYD +H+G+AR + FD+L R+LR Y+G Sbjct: 111 KLRLYNSLTRSKDVFIPQHGKKVMWYCCGPTVYDASHMGHARSYVSFDILRRVLRGYFGY 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITD+DDKII RARQ + Sbjct: 171 D-VLYCMNITDVDDKIIRRARQNY 193 >gi|328351033|emb|CCA37433.1| cysteinyl-tRNA synthetase [Pichia pastoris CBS 7435] Length = 741 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 134/235 (57%), Gaps = 17/235 (7%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII------FDTSS 158 Q++ +D RL L T R + ++P+++ +Q II G+AY + + FDT+ Sbjct: 215 QRYDEDMERLNILPATVTTRVSEYVPEIVEFVQGIIDRGYAYVTKDGSVYFDTTQFDTNE 274 Query: 159 IPNYGS---FSRRKIDEQKMGT-RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 +Y +++ ++ K G + K+N ADF LWK S P EP W+SPWG+GRPG Sbjct: 275 KHDYAKLQPWNKADLELLKEGEGSLSSNDGKRNSADFALWKSSKPGEPSWKSPWGQGRPG 334 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++H G L++E Sbjct: 335 WHIECSVMASDITGESMDIHSGGIDLAFPHHDNELAQSEARFDCKQWVNYFLHTGHLHIE 394 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 G+KMSKS NFITI+E L K+ R +RL + + +DF L E Sbjct: 395 GQKMSKSLKNFITIDEAL--SKYSARQ-----LRLCFALVQWNNQLDFKESLLNE 442 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R F + + + Y CGPTVYD +H+G+AR + D+ R+L+ ++G Sbjct: 18 LKLFNSLTRTKVPFIPTNANEVTWYSCGPTVYDSSHMGHARNYVTIDINRRILQDFFGYN 77 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + +V+N+TDIDDKII +ARQE+ Sbjct: 78 -IKFVQNVTDIDDKIILKARQEY 99 >gi|194882631|ref|XP_001975414.1| GG20575 [Drosophila erecta] gi|190658601|gb|EDV55814.1| GG20575 [Drosophila erecta] Length = 741 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDNGLAYAANNSVYFDVNGFDKREKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWG+GR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNEAEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+K++N+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 19 KLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILSDYFGY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII RARQ H Sbjct: 79 N-IHYVMNITDIDDKIIRRARQNH 101 >gi|58393703|ref|XP_320253.2| AGAP012283-PA [Anopheles gambiae str. PEST] gi|55234373|gb|EAA00242.2| AGAP012283-PA [Anopheles gambiae str. PEST] Length = 743 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 126/230 (54%), Gaps = 20/230 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------- 158 F KD L L P R + ++PQ++ I+ II +G AYEAN + FD + Sbjct: 215 FHKDMAALNVLQPDVLTRVSEYVPQIVTYIEKIIANGLAYEANGSVYFDVAGFDRREQHH 274 Query: 159 ----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 +P YG + + E + K++ DF LWK S EP W+SPWGRGRP Sbjct: 275 YAKLVPEAYGDAKQLQEGEGDLSIGADRLTEKRSANDFALWKSSKAGEPWWDSPWGRGRP 334 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+S G DIH GG+DL FPHH+NE+AQS D + ++H G L + Sbjct: 335 GWHIECSAMASDICGDYLDIHTGGVDLKFPHHDNELAQSEAHDGSAEWVKYFLHTGHLTI 394 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 G KMSKS NF+TI ++LE A +RLA L+ +++ +D++ Sbjct: 395 AGCKMSKSLKNFVTIQQVLEKHT-------ATQLRLAFLLHSWKDTLDYS 437 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ +YN+L R+ F D N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 19 KLYLYNSLTRRKELFVPRDGRNVHWYSCGPTVYDASHMGHARSYISFDILRRVLSDYFGY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ H Sbjct: 79 N-VLYVMNITDIDDKIIKRARQNH 101 >gi|19922364|ref|NP_611087.1| Cysteinyl-tRNA synthetase [Drosophila melanogaster] gi|122087256|sp|Q7KN90|SYCC_DROME RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|4972706|gb|AAD34748.1| unknown [Drosophila melanogaster] gi|7302987|gb|AAF58057.1| Cysteinyl-tRNA synthetase [Drosophila melanogaster] gi|220943686|gb|ACL84386.1| Aats-cys-PA [synthetic construct] Length = 741 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ++ IQ II +G AY ANN + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDNGLAYAANNSVYFDVNGFDKREKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWG+GR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSIAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 YEKFLNEF 454 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K+K++N+L R+ +F +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILSDYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIRRARQNH 101 >gi|281351477|gb|EFB27061.1| hypothetical protein PANDA_021387 [Ailuropoda melanoleuca] Length = 823 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--- 161 ++F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 296 EEFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFASSER 355 Query: 162 --YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 356 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 415 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 416 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 475 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 476 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 527 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + Y CGPTVYD +H+G+AR + FD+L R+LR Y+G Sbjct: 103 KLRLYNSLTRSKDVFIPQHGKKVMWYCCGPTVYDASHMGHARSYVSFDILRRVLRGYFGY 162 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITD+DDKII RARQ + Sbjct: 163 D-VLYCMNITDVDDKIIRRARQNY 185 >gi|146080697|ref|XP_001464062.1| cysteinyl-tRNA synthetase [Leishmania infantum JPCM5] Length = 784 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 102 KNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-- 159 K + F +D RL P R T ++PQ++ +Q II +G AY + FDT + Sbjct: 238 KYERAFFEDMQRLGIREPDIVTRVTEYVPQVVEFVQKIIDNGFAYVGETSVFFDTEAYIR 297 Query: 160 -----PNYGSFSRRKIDEQKM--GTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWG 209 P R E +M G V K K++P DF LWK S P EP W SPWG Sbjct: 298 AGHDYPKLKPGGDRNTTEDEMAEGEGVLSKGIEGEKRSPNDFALWKFSKPGEPRWPSPWG 357 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 GRPGWHIECS M+S LG+ DIH GG DL FPHH+NE AQS + + N ++H G Sbjct: 358 EGRPGWHIECSVMASDILGENMDIHSGGWDLKFPHHDNECAQSEACNLHSQWVNYFLHCG 417 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L+++G KMSKS NFITI + L+ R+ +RL L + +P++F+ Q L E Sbjct: 418 HLHIKGLKMSKSLKNFITIRQALDELGVTART-----MRLLFLANPWNKPMNFSDQSLDE 472 Query: 330 AE 331 A+ Sbjct: 473 AK 474 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ N+L + +F D +R Y CGPTVYD +H+G+AR + FD++ R++ Y+G Sbjct: 38 LKVMNSLTETLEDFAPRDGRVVRWYTCGPTVYDLSHMGHARAYLTFDIIRRVMEDYFG-Y 96 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 97 SVIYQMNITDIDDKIIKRAR 116 >gi|195431327|ref|XP_002063694.1| GK15775 [Drosophila willistoni] gi|194159779|gb|EDW74680.1| GK15775 [Drosophila willistoni] Length = 741 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/270 (36%), Positives = 140/270 (51%), Gaps = 23/270 (8%) Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 +Q+ I N + QF D L L P R + ++PQ++ IQ II +G Sbjct: 192 KQKGAQINDNSVFEALPQYWEDQFHNDMKSLNILPPDVLTRVSEYVPQIVAFIQRIIDNG 251 Query: 144 HAYEANNEIIFDTSS------------IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 AY AN+ + FD + +P YG + E + K++ D Sbjct: 252 LAYAANSSVYFDVNGFDKREKHHYAKLVPEAYGDTKSLQEGEGDLSIAEDRLSEKRSAND 311 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK S EP W+SPWGRGRPGWHIECSAM+S G FDIH GG+DL FPHH+NE+A Sbjct: 312 FALWKASKAGEPWWDSPWGRGRPGWHIECSAMASDVFGSQFDIHTGGVDLKFPHHDNELA 371 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 QS A + ++H G L + G KMSKS NF+TI E L + A +RLA Sbjct: 372 QSEAAFNEAEWVKYFLHTGHLTIAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLA 424 Query: 311 MLMTHYREPIDF---TVQRLTEAEILLSKW 337 L+ +++ +D+ T++ T+ E L+++ Sbjct: 425 FLLHSWKDTLDYSENTMEMATQYEKFLNEF 454 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 61/86 (70%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K++++N+L R+ EF + + + Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 17 RAKLRLFNSLTRQKEEFVPLQGNTVTWYSCGPTVYDASHMGHARSYISFDILRRILSNYF 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + YV NITDIDDKII+RARQ H Sbjct: 77 GYN-IHYVMNITDIDDKIIKRARQNH 101 >gi|73982655|ref|XP_863344.1| PREDICTED: similar to cysteinyl-tRNA synthetase isoform c isoform 3 [Canis familiaris] Length = 827 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSI 159 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT S Sbjct: 300 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTVKFASSER 359 Query: 160 PNYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 360 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 419 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 420 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 479 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 480 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 531 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + Y CGPTVYD +H+G+AR I FD+L R+LR Y+G Sbjct: 111 KLRLYNSLTRNKDVFIPQHGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYFGY 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITD+DDKII+RARQ + Sbjct: 171 D-VFYCMNITDVDDKIIKRARQNY 193 >gi|145344518|ref|XP_001416778.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577004|gb|ABO95071.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 746 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 129/242 (53%), Gaps = 17/242 (7%) Query: 92 INDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 I D + + +F++D L P R + ++ ++I IQ II G AYE+N Sbjct: 194 IQDGYLTLAHQFEAEFMEDMKSLGVARPDMLTRVSEYVDKVILYIQVIINKGFAYESNGS 253 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKM----------GTRVPEKYHKKNPADFILWKRSTPME 201 + FD + + K+++ M G EK KK DF+LWK S E Sbjct: 254 VYFDVKAFEAAENHKYGKLNQNAMENITEAMDGEGALEAEKSEKKCDFDFVLWKMSKDGE 313 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 P W SPWG GRPGWHIECSAM S LG+ DI+GGG+DL FPHHEN++AQS E+ Sbjct: 314 PCWSSPWGMGRPGWHIECSAMCSDILGQSVDINGGGIDLNFPHHENQLAQSEAHYDTEQW 373 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N +IH G L+++G KMSKS NFITI L + + A IR L+ + +P++ Sbjct: 374 VNFFIHTGHLHIDGLKMSKSLKNFITIRAAL-------KMYSARQIRFLFLLNQWCDPME 426 Query: 322 FT 323 T Sbjct: 427 LT 428 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 52/77 (67%), Gaps = 1/77 (1%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + NT + F+ + +++ Y+CGPTVYD AH+G+AR + FDVL R++ Y+G V Sbjct: 47 LLNTFTKTKVPFKPLSGNSVGWYICGPTVYDSAHVGHARNYVNFDVLRRVMMEYFGYD-V 105 Query: 67 TYVRNITDIDDKIIERA 83 +V N+TDIDDKII RA Sbjct: 106 RFVMNVTDIDDKIIMRA 122 >gi|170049267|ref|XP_001855148.1| cysteinyl-tRNA synthetase [Culex quinquefasciatus] gi|167871109|gb|EDS34492.1| cysteinyl-tRNA synthetase [Culex quinquefasciatus] Length = 738 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 135/259 (52%), Gaps = 34/259 (13%) Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 R+E S+ N + +F KD L L P R + ++PQ++ IQ II +G Sbjct: 191 RKEGSSVSENSIFETLPRYWEDEFHKDMDALNVLPPDVLTRVSEYVPQIVEYIQKIIENG 250 Query: 144 HAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY-------------------H 184 AYEAN + FD + G +R K K+ VPE Y Sbjct: 251 LAYEANGSVYFDVA-----GFDAREKHHYAKL---VPEAYGDAKSLQEGEGDLSGDQSSE 302 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK S EP W+SPWGRGRPGWHIECSAM+S G DIH GG+DL FPH Sbjct: 303 KRSANDFALWKCSKAGEPWWDSPWGRGRPGWHIECSAMASDICGDFLDIHTGGVDLKFPH 362 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NE+AQS D + ++H G L + G KMSKS NF+TI + L+ A Sbjct: 363 HDNELAQSEAHDNSSEWVKYFLHTGHLTIAGCKMSKSLKNFVTIQQALQKHT-------A 415 Query: 305 PVIRLAMLMTHYREPIDFT 323 +RLA L+ +++ +D++ Sbjct: 416 TQLRLAFLLHSWKDTLDYS 434 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R+ F D N+R Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 RLRLYNSLTRQKELFVPRDGRNVRWYSCGPTVYDASHMGHARSYISFDILRRVLTDYFGF 79 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ + Sbjct: 80 N-VLYVMNITDIDDKIIKRARQNY 102 >gi|254567071|ref|XP_002490646.1| Essential protein of unknown function [Pichia pastoris GS115] gi|238030442|emb|CAY68366.1| Essential protein of unknown function [Pichia pastoris GS115] Length = 761 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/236 (38%), Positives = 134/236 (56%), Gaps = 17/236 (7%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII------FDTSS 158 Q++ +D RL L T R + ++P+++ +Q II G+AY + + FDT+ Sbjct: 235 QRYDEDMERLNILPATVTTRVSEYVPEIVEFVQGIIDRGYAYVTKDGSVYFDTTQFDTNE 294 Query: 159 IPNYGS---FSRRKIDEQKMGT-RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 +Y +++ ++ K G + K+N ADF LWK S P EP W+SPWG+GRPG Sbjct: 295 KHDYAKLQPWNKADLELLKEGEGSLSSNDGKRNSADFALWKSSKPGEPSWKSPWGQGRPG 354 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++H G L++E Sbjct: 355 WHIECSVMASDITGESMDIHSGGIDLAFPHHDNELAQSEARFDCKQWVNYFLHTGHLHIE 414 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G+KMSKS NFITI+E L K+ R +RL + + +DF L E Sbjct: 415 GQKMSKSLKNFITIDEAL--SKYSARQ-----LRLCFALVQWNNQLDFKESLLNEV 463 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R F + + + Y CGPTVYD +H+G+AR + D+ R+L+ ++G Sbjct: 38 LKLFNSLTRTKVPFIPTNANEVTWYSCGPTVYDSSHMGHARNYVTIDINRRILQDFFGYN 97 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + +V+N+TDIDDKII +ARQE+ Sbjct: 98 -IKFVQNVTDIDDKIILKARQEY 119 >gi|269795398|ref|YP_003314853.1| cysteinyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] gi|310947217|sp|D1BHU9|MSHC_SANKS RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|269097583|gb|ACZ22019.1| cysteinyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] Length = 425 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 180/385 (46%), Gaps = 47/385 (12%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 A + + +YVCG T YD HIG+A + FD+L R R + VTY N+TD+DD + Sbjct: 32 AAEGPSASLYVCGITPYDATHIGHAATYVAFDLLGRAWRD--AGQQVTYASNVTDVDDPL 89 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 +ERA + D + + T F +D T L + P A IP + ++ + Sbjct: 90 LERATAT--GVEWQD----LAVEQTALFAEDMTALGVVPPDVYLGAVETIPPVAAAVEEL 143 Query: 140 ILHGHAYE------------ANNEIIFDTSSIPNYGSFSRRKIDEQKM-------GTRVP 180 + G AY A ++ D ++ +G SR +DE M G P Sbjct: 144 VAAGAAYRVPLEEGAGGDAPALGDVYADVTADSAFGQVSR--MDEATMLELFAERGGD-P 200 Query: 181 EKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K+N D +LW+R P EP WE+ G GRPGWHIEC+ ++ LG FD+ GGG D Sbjct: 201 GRAGKRNALDPLLWRRERPGEPAWEAGSLGTGRPGWHIECAVIARAGLGLPFDVQGGGSD 260 Query: 240 LIFPHHENEIAQS---CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 L+FPHHE + + D A +H G + +G KMSKS GN + ++ L Sbjct: 261 LLFPHHEMSTSHARLIGDGDVHGVGAATHVHAGLVGYQGEKMSKSRGNLVFVSRLRAEGV 320 Query: 297 FGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-----PA 350 P+ IRLA+L HYR ++T LTE W + G D Sbjct: 321 -------EPMAIRLALLAHHYRSDWEWTDASLTEGVARFETWRSAVSGNGGPDADATLAE 373 Query: 351 VLSALYNDLNTVSAIQALHKLARES 375 V +AL +DL+ A+ A+ + A S Sbjct: 374 VRAALADDLDAPRALAAVDRWAELS 398 >gi|194755026|ref|XP_001959793.1| GF11862 [Drosophila ananassae] gi|190621091|gb|EDV36615.1| GF11862 [Drosophila ananassae] Length = 741 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 QF D L L P R + ++PQ+I IQ II +G AY AN+ + FD + Sbjct: 214 QFHNDMKSLNILPPDVLTRVSEYVPQIITFIQKIIDNGLAYAANSSVYFDVNGFDKREKH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + E + K++ DF LWK S EP W+SPWG+GR Sbjct: 274 HYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G FDIH GG+DL FPHH+NE+AQS A + ++H G L Sbjct: 334 PGWHIECSAMASDIFGSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI E L + A +RLA L+ +++ +D+ T++ T+ Sbjct: 394 IAGCKMSKSLKNFVTIQEAL-------KKHSATQLRLAFLLHSWKDTLDYSENTMEMATQ 446 Query: 330 AEILLSKW 337 E L+++ Sbjct: 447 FEKFLNEF 454 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/84 (54%), Positives = 62/84 (73%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+K++N+L R+ EF +D +N+ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 19 KLKLFNSLTRQKEEFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILANYFGY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII+RARQ H Sbjct: 79 H-IHYVMNITDIDDKIIKRARQNH 101 >gi|109105041|ref|XP_001096069.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic isoform 2 [Macaca mulatta] Length = 738 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 212 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 271 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 272 SYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 331 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 332 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 391 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 392 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 442 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + V Y NITDIDDKII+ Sbjct: 36 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYF-KFDVFYCMNITDIDDKIIK 94 Query: 82 RARQEH 87 RARQ H Sbjct: 95 RARQNH 100 >gi|116203083|ref|XP_001227353.1| hypothetical protein CHGG_09426 [Chaetomium globosum CBS 148.51] gi|88177944|gb|EAQ85412.1| hypothetical protein CHGG_09426 [Chaetomium globosum CBS 148.51] Length = 794 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F D L L P R T ++PQ++ ++ II G AYEAN + FD ++ Sbjct: 204 LTQAMEKAFSDDMEALNVLPPDAVTRVTEYVPQIVSFVEQIIAKGFAYEANGSVYFDIAA 263 Query: 159 IPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + + E+ G+ KK DF LWK+S P EP W SPWG Sbjct: 264 FEQAGNTYARLRPESKNDKALQEEGEGSLSKSLEGKKRSGDFALWKKSKPGEPFWPSPWG 323 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC----ADRIEKT-ANI 264 GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS +R E + N Sbjct: 324 AGRPGWHIECSVMASDKLGEQMDIHSGGIDLAFPHHDNELAQSEAYFHQYERGEHSWVNY 383 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T ++ A +R+ LM + + ++ + Sbjct: 384 FLHMGHLSIAGSKMSKSLKNFQTIQDALAT------TYTARNMRIVFLMGRWNDGVEIS 436 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I ++N+L+ F + + Y CGPT YD +H+G+AR + D++ R+L +++G Sbjct: 4 ITVHNSLKPGSPVPFVPREEGKVSWYACGPTTYDLSHLGHARNYVSTDIIRRILIHHFG 62 >gi|297267201|ref|XP_002799492.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic [Macaca mulatta] Length = 662 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 158 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 217 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 218 SYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 277 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 278 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 337 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 338 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 388 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+RARQ H Sbjct: 1 MGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIKRARQNH 46 >gi|194218608|ref|XP_001492545.2| PREDICTED: similar to CysRS protein [Equus caballus] Length = 868 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSI 159 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT S Sbjct: 341 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTVKFASSEK 400 Query: 160 PNYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +Q+ + K++P DF LWK S P EP W PWG+G Sbjct: 401 HSYGKLVPEAVGDQRALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 460 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 461 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 520 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 521 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 572 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 147 RLRLYNSLTRNKDVFIPQSGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-K 205 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ + Sbjct: 206 FDVFYCMNITDIDDKIIKRARQNY 229 >gi|58263374|ref|XP_569097.1| cysteine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21] gi|134108600|ref|XP_776953.1| hypothetical protein CNBB4810 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259636|gb|EAL22306.1| hypothetical protein CNBB4810 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223747|gb|AAW41790.1| cysteine-tRNA ligase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 785 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 134/249 (53%), Gaps = 26/249 (10%) Query: 92 INDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 I D I++ + S F D RL L P R + ++P+++ +Q I+ +G AYE Sbjct: 235 IADPIAVCRRLASYWENAFFTDMARLRVLPPDTITRVSEYVPEIVSFVQRIVDNGFAYEG 294 Query: 149 NNEIIFDTSSIPNY--------------GSFSRRKIDEQKMGTRVPEKYHKKNPADFILW 194 + FD S +K+ ++ G + K+ PADF LW Sbjct: 295 GGSVWFDVDKFEGAEGDGFRHEYAKLQPSSKGNKKLLDEGEGALTGSQ-GKRRPADFALW 353 Query: 195 K-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 K +S P EP W SPWG GRPGWHIECS M+S LG DIH GG+DL+FPHH+NE+AQ+ Sbjct: 354 KAKSKPGEPAWPSPWGEGRPGWHIECSVMASAILGSGMDIHSGGVDLMFPHHDNELAQAE 413 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 ++ N ++H G L++EG KMSKS NFITI+E L+T + A +RLA ++ Sbjct: 414 AYHGCKQWVNYFLHTGHLHIEGLKMSKSLKNFITIDEALQT-------YSARQLRLAFML 466 Query: 314 THYREPIDF 322 + +DF Sbjct: 467 QIWNAKLDF 475 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 12/132 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R F + + Y CGPTVYD +H+G+AR + D++ R+LR Y+ Sbjct: 25 LRVYNSLTRSKDVFVPTNGRRVDWYNCGPTVYDSSHMGHARNYLTQDIVRRILRDYFNYD 84 Query: 65 CVTYVRNITDIDDKIIERARQEH---PSIPINDA-----ISIITSKNTQQFVKDTTRLAC 116 V +V N+TDIDDKII RAR+ + +I N A IS + + T+ K L Sbjct: 85 -VNFVMNVTDIDDKIILRARESYLLDQAISTNLALTPELISDVEAAFTKYLAKPLKSLT- 142 Query: 117 LAP-THQPRATN 127 AP H P AT+ Sbjct: 143 -APLEHSPNATS 153 >gi|326920114|ref|XP_003206320.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like [Meleagris gallopavo] Length = 748 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 132/241 (54%), Gaps = 26/241 (10%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSIP 160 +F KD L L P R + ++P+++ ++ I+ +G+ Y +N + FDT S Sbjct: 222 EFHKDMEALNVLPPDVLTRVSEYVPEIVAFVKKIVDNGYGYVSNGSVYFDTVKFASSEKH 281 Query: 161 NYGSFSRRKIDEQKM-----------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 +Y + +QK R+ EK+ +P DF LWK S P EP W+SPWG Sbjct: 282 SYAKLVPEAVGDQKALQEGEGDLSISADRLCEKH---SPNDFALWKSSKPGEPSWDSPWG 338 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 +GRPGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + ++H G Sbjct: 339 KGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFENDNWVRYFLHTG 398 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + Sbjct: 399 HLTIAGCKMSKSLKNFITIKDAL--KKHTARQ-----LRLAFLMHSWKDTLDYSSNTMES 451 Query: 330 A 330 A Sbjct: 452 A 452 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R FQ + + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLCLYNSLTRNKEIFQPQNGKKVTWYCCGPTVYDASHMGHARSYISFDILRRILRDYF-K 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+R RQ + Sbjct: 87 FDVFYCMNITDIDDKIIKRTRQNY 110 >gi|109105037|ref|XP_001096302.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic isoform 4 [Macaca mulatta] Length = 831 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 305 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 364 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 365 SYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 424 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 425 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 484 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 485 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + Sbjct: 111 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYF-K 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 170 FDVFYCMNITDIDDKIIKRARQNH 193 >gi|289622623|emb|CBI50892.1| unnamed protein product [Sordaria macrospora] Length = 807 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/327 (32%), Positives = 157/327 (48%), Gaps = 61/327 (18%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T Q F D L L P R T ++PQ++ ++ II G AYEA+ + FD + Sbjct: 212 LTKTMEQAFADDMEALNVLPPDVITRVTEYVPQIVAFVEQIIQKGFAYEADGSVYFDIGA 271 Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKYH---------KKNPADFILWKRSTPMEPGWESPWG 209 G+ R E K T + E+ KK DF LWK+S P EP W SPWG Sbjct: 272 FEKAGNTYARLRPESKNDTALQEEGEGSLSTALGGKKRSGDFALWKKSKPGEPYWPSPWG 331 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS------CCADRIEKTAN 263 GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS CC K + Sbjct: 332 AGRPGWHIECSVMASDKLGEQMDIHSGGIDLAFPHHDNELAQSEAYFHDCC-----KGEH 386 Query: 264 IWI----HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 W+ H G L++ G KMSKS NF TI + L + ++ A +R+ L++ + + Sbjct: 387 TWVKYFLHMGHLSIAGSKMSKSLKNFQTIQDALAS------TYTARNMRIVFLLSRWNDG 440 Query: 320 IDFTVQRLTEAE-----------ILLSKWPQTSTSKGIIDPAVL---------------- 352 ++ + +A+ + ++ + S G+ D ++ Sbjct: 441 VEISPDMRKQADNWETTLDNFFTNIKARLSEVDASSGLKDLSLSEDVGAKGLLEDFESAK 500 Query: 353 ----SALYNDLNTVSAIQALHKLARES 375 +AL N +T +A+Q L KL R + Sbjct: 501 KDLDAALRNSFDTPTAMQVLLKLVRNA 527 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 14/102 (13%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR- 84 I Y CGPTVYD +H+G+AR + D++ R+L +Y+ K V +V N TD+DDKII +AR Sbjct: 26 ISWYACGPTVYDLSHLGHARNYVSTDIIRRILMHYFDYK-VNFVMNYTDVDDKIIIKARR 84 Query: 85 -------QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 +E P P + I + K Q + K+ L LAP Sbjct: 85 KRLLELEKEKPYTP--EQIRDLIFKAFQAYTKN---LPLLAP 121 >gi|114635644|ref|XP_508228.2| PREDICTED: cysteinyl-tRNA synthetase isoform 9 [Pan troglodytes] gi|114635646|ref|XP_001156007.1| PREDICTED: cysteinyl-tRNA synthetase isoform 5 [Pan troglodytes] Length = 684 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 159 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 218 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 219 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 278 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 279 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 338 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 339 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 388 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+L+ Y+ + V Y NITDIDDKII+RARQ H Sbjct: 1 MGHARSYISFDILRRVLKDYF-KFDVFYCMNITDIDDKIIKRARQNH 46 >gi|109105039|ref|XP_001096538.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic isoform 5 [Macaca mulatta] Length = 748 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 222 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 281 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 282 SYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 341 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 342 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 401 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 402 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYF-K 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 87 FDVFYCMNITDIDDKIIKRARQNH 110 >gi|114635648|ref|XP_001155769.1| PREDICTED: cysteinyl-tRNA synthetase isoform 1 [Pan troglodytes] Length = 656 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 131 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 190 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 191 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 250 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 251 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 310 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 311 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 360 >gi|321252445|ref|XP_003192408.1| cysteine-tRNA ligase [Cryptococcus gattii WM276] gi|317458876|gb|ADV20621.1| Cysteine-tRNA ligase, putative [Cryptococcus gattii WM276] Length = 785 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 135/249 (54%), Gaps = 26/249 (10%) Query: 92 INDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 I D I++ + S F D RL L P R + ++P+++ +Q I+ +G AYE Sbjct: 235 IADPIAVCRRLASYWENAFFTDMARLRVLPPDTITRVSEYVPEIVSFVQRIVDNGFAYEG 294 Query: 149 NNEIIFDTSSIPNY--------------GSFSRRKIDEQKMGTRVPEKYHKKNPADFILW 194 + FD + S +K+ ++ G + K+ PADF LW Sbjct: 295 GGSVWFDVNKFEGAEGDGFRHEYAKLQPSSKGNKKLLDEGEGALTGSQ-GKRRPADFALW 353 Query: 195 K-RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 K +S P EP W SPWG GRPGWHIECS M+S LG D+H GG+DL+FPHH+NE+AQ+ Sbjct: 354 KAKSKPGEPAWPSPWGEGRPGWHIECSVMASAILGSGMDVHSGGVDLMFPHHDNELAQAE 413 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 ++ N ++H G L++EG KMSKS NFITI+E L+T + A +RLA ++ Sbjct: 414 AYHGCKQWVNYFLHTGHLHIEGLKMSKSLKNFITIDEALQT-------YSARQLRLAFML 466 Query: 314 THYREPIDF 322 + +DF Sbjct: 467 QIWNAKLDF 475 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 8/130 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R F + + Y CGPTVYD +H+G+AR + D++ R+LR Y+ Sbjct: 25 LRVYNSLTRSKDVFVPTNGRRVDWYNCGPTVYDSSHMGHARNYLTQDIIRRILRDYFNYD 84 Query: 65 CVTYVRNITDIDDKIIERARQEH---PSIPINDAIS-IITSKNTQQFVKDTTRLACLAPT 120 V +V N+TDIDDKII RAR+ + +I N A++ + S F K + PT Sbjct: 85 -VNFVMNVTDIDDKIILRARESYLLDQAISSNPALTPQLISDVEAAFTKYIAKPLKSLPT 143 Query: 121 ---HQPRATN 127 H P AT+ Sbjct: 144 PLEHSPNATS 153 >gi|226287115|gb|EEH42628.1| cysteinyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18] Length = 830 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 176/362 (48%), Gaps = 56/362 (15%) Query: 67 TYVRNITDI-----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 T+ +N+ D+ D R E SI + +T +F+KD L L P Sbjct: 233 TFYKNVQDVLLEHLDSLYGSSIRGEDRSI-----FTKLTKTYEDRFMKDIRDLNVLDPDA 287 Query: 122 QPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKID 171 R T ++P+++ ++ I+ H AY ++ + FD ++ G S++R K+ Sbjct: 288 VTRVTEYMPEIVQFVERIVQHKFAYVTSDGSVYFDITAFEASGNSYARLEPWNRNDTKLQ 347 Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G + K++PADF LWK S EP W SPWG GRPGWHIECSAM+S LGK Sbjct: 348 AEGEGALINRTTEKRSPADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQM 407 Query: 232 DIHGGGLDLIFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNF 285 DIH GG+DL FPHH+NE+AQS CA N ++H G L+++G KMSKS NF Sbjct: 408 DIHSGGIDLAFPHHDNELAQSEAYWHENCAQN--HWVNYFLHMGHLSIQGSKMSKSLKNF 465 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------- 337 TI E L+ + RS +R+ L+ +++ I+ T + K Sbjct: 466 TTIREALDKGDWTPRS-----LRIVFLLGGWKDGIEITEDLVKAGNAWEEKANNFFINAR 520 Query: 338 ---PQTSTSKGIIDPAVLSAL-------YNDL----NTVSAIQALHKL-ARESTKNHDLL 382 Q ++ G D + +AL Y +L NT A+ A+ +L ++ + N L Sbjct: 521 DSVAQANSDAGSTDDTLATALKSAQDAVYQNLCDSFNTAGAMHAISELISKYNISNKSTL 580 Query: 383 PI 384 P+ Sbjct: 581 PV 582 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DPS + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPSGRKVTWYACGPTVYDDAHLGHARNYVSNDILRRIMRDYFN 85 Query: 63 EKCVTYVRNITDIDDKI 79 V ++ NITD+DDK+ Sbjct: 86 FD-VQFIMNITDVDDKV 101 >gi|184201038|ref|YP_001855245.1| cysteinyl-tRNA synthetase [Kocuria rhizophila DC2201] gi|310947188|sp|B2GIP6|MSHC_KOCRD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|183581268|dbj|BAG29739.1| cysteine--1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC [Kocuria rhizophila DC2201] Length = 438 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 127/406 (31%), Positives = 198/406 (48%), Gaps = 60/406 (14%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 ++++T ++ A D +YVCG T YD H+G+A + FD+L+RL R Sbjct: 20 RVHDTSTGQLEPLAARD-GRASLYVCGITPYDATHMGHAATYVAFDLLHRLWRD--AGWS 76 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLACLAPTH 121 V YV+N+TD+DD ++ERA DA + + T+ F D + L LAP H Sbjct: 77 VDYVQNVTDVDDPLLERA----------DATGVDWRELAESQTELFRTDMSALNVLAPQH 126 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA------------NNEIIFDTSSI-------PN- 161 AT + +++ ++ ++ G AY A ++ FD + P+ Sbjct: 127 YVGATEVVDRIVPAVERLLERGLAYRAPAGTGQGGEPAPAGDVYFDVDAAGALRAEDPDA 186 Query: 162 --YGSFSRRKIDEQKMGTRV------PEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGR 212 GS R + +M P++ K++P D +LW+ EP W+ + G GR Sbjct: 187 WVVGSTCRLAGERDRMMPLFADHGGDPDRTGKRDPMDPLLWRAHRAGEPSWDGASLGPGR 246 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS ++ L + F + GGG DL FPHH+ A A + A ++H + Sbjct: 247 PGWHIECSVIALDLLPRPFTVQGGGSDLAFPHHDMG-AGHAYALSGQPMAEHYVHTAMVG 305 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 L+G KMSKS GN + L+ T + G PA VIRLA+L HYR +T + L +A Sbjct: 306 LDGEKMSKSRGNLV----LVSTLRAQGMD-PA-VIRLAILANHYRTDWFWTDELLEQARR 359 Query: 333 LLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLA 372 L W +T+ + +++ AV +AL DLN+ +A+ A+ A Sbjct: 360 RLGTWREAAAKQETAGADAMLE-AVRAALGEDLNSPAALIAVDAWA 404 >gi|119622942|gb|EAX02537.1| cysteinyl-tRNA synthetase, isoform CRA_b [Homo sapiens] gi|193788362|dbj|BAG53256.1| unnamed protein product [Homo sapiens] Length = 738 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 213 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 272 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 273 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 332 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 333 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 392 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 393 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 442 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+ Sbjct: 36 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIK 94 Query: 82 RARQEH 87 RARQ H Sbjct: 95 RARQNH 100 >gi|114635640|ref|XP_001155891.1| PREDICTED: cysteinyl-tRNA synthetase isoform 3 [Pan troglodytes] gi|332835583|ref|XP_001156119.2| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic isoform 6 [Pan troglodytes] Length = 738 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 213 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 272 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 273 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 332 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 333 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 392 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 393 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 442 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+ Sbjct: 36 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIK 94 Query: 82 RARQEH 87 RARQ H Sbjct: 95 RARQNH 100 >gi|194379958|dbj|BAG58331.1| unnamed protein product [Homo sapiens] Length = 662 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 159 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 218 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 219 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 278 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 279 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 338 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 339 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 388 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+RARQ H Sbjct: 1 MGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIKRARQNH 46 >gi|332835587|ref|XP_003312913.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic [Pan troglodytes] Length = 662 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 159 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 218 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 219 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 278 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 279 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 338 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 339 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 388 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+RARQ H Sbjct: 1 MGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIKRARQNH 46 >gi|119622944|gb|EAX02539.1| cysteinyl-tRNA synthetase, isoform CRA_d [Homo sapiens] Length = 622 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 159 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 218 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 219 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 278 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 279 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 338 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 339 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 388 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+RARQ H Sbjct: 1 MGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIKRARQNH 46 >gi|30583997|gb|AAP36247.1| Homo sapiens cysteinyl-tRNA synthetase [synthetic construct] gi|60652837|gb|AAX29113.1| cysteinyl-tRNA synthetase [synthetic construct] gi|60652839|gb|AAX29114.1| cysteinyl-tRNA synthetase [synthetic construct] Length = 749 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|332835581|ref|XP_003312912.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic [Pan troglodytes] Length = 831 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 306 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 365 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 366 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 425 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 426 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 485 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 486 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 111 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 171 D-VFYCMNITDIDDKIIKRARQNH 193 >gi|114635636|ref|XP_001156397.1| PREDICTED: cysteinyl-tRNA synthetase isoform 8 [Pan troglodytes] gi|332835579|ref|XP_001155829.2| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic isoform 2 [Pan troglodytes] Length = 748 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|10835051|ref|NP_001742.1| cysteinyl-tRNA synthetase, cytoplasmic isoform b [Homo sapiens] gi|20141641|sp|P49589|SYCC_HUMAN RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|9837515|gb|AAG00578.1|AF288206_1 cytoplasmic cysteinyl-tRNA synthetase [Homo sapiens] gi|12804055|gb|AAH02880.1| Cysteinyl-tRNA synthetase [Homo sapiens] gi|32880169|gb|AAP88915.1| cysteinyl-tRNA synthetase [Homo sapiens] gi|60655925|gb|AAX32526.1| cysteinyl-tRNA synthetase [synthetic construct] gi|119622941|gb|EAX02536.1| cysteinyl-tRNA synthetase, isoform CRA_a [Homo sapiens] gi|119622945|gb|EAX02540.1| cysteinyl-tRNA synthetase, isoform CRA_a [Homo sapiens] gi|123979740|gb|ABM81699.1| cysteinyl-tRNA synthetase [synthetic construct] Length = 748 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|62240992|ref|NP_001014437.1| cysteinyl-tRNA synthetase, cytoplasmic isoform c [Homo sapiens] gi|57997552|emb|CAI46108.1| hypothetical protein [Homo sapiens] gi|119622946|gb|EAX02541.1| cysteinyl-tRNA synthetase, isoform CRA_e [Homo sapiens] gi|194380236|dbj|BAG63885.1| unnamed protein product [Homo sapiens] Length = 831 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 306 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 365 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 366 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 425 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 426 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 485 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 486 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 111 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 171 D-VFYCMNITDIDDKIIKRARQNH 193 >gi|322816399|gb|EFZ24717.1| cysteinyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 721 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 155/309 (50%), Gaps = 52/309 (16%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------- 159 F +D RL P R T ++PQ++ IQ I+ +G AY + I FDT++ Sbjct: 246 FFEDMRRLGIRDPDVVSRVTEYVPQVVDFIQKIMDNGFAYRGTSSIFFDTTAFLRAGHDY 305 Query: 160 PNYGSFSRR--------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 P S R ++ E + V K+N DF LWK S P EP W SPWG G Sbjct: 306 PKLKPVSERGENDATEAEMAEGEGALTVGVAGEKRNANDFALWKFSKPGEPRWPSPWGAG 365 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG D+H GG DL FPHH+NE AQS + N ++H G L Sbjct: 366 RPGWHIECSVMASDILGTNIDVHSGGWDLKFPHHDNECAQSEACHMQHQWINYFLHCGHL 425 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA- 330 +++G KMSKS NFITI + L+ R V+RL L H+ +P++F+ Q + EA Sbjct: 426 HIKGLKMSKSLKNFITIRQALDELDVTPR-----VMRLLFLANHWGKPMNFSDQSIEEAK 480 Query: 331 -------------EILLSK--WPQTSTSKGIID-------------PAVLSALYNDLNTV 362 +I+L K W +T +G+ D AV +AL N+ +T Sbjct: 481 ERERVLRAFFGSVDIVLRKDNWGET---QGLNDHDRRLQETWLTAENAVHAALQNNFDTP 537 Query: 363 SAIQALHKL 371 +A+ ++ L Sbjct: 538 AAMDSVMGL 546 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++ N+L + F + +R Y CGPTVY+ +H+G+AR + FD+L R++ Y+G Sbjct: 37 KGLRVLNSLTESVEPFAPREGRLVRWYACGPTVYELSHMGHARAYLTFDILRRIMEDYFG 96 Query: 63 EKCVTYVRNITDIDDKIIERAR 84 + V Y NITDIDDKII+RAR Sbjct: 97 YQVV-YQMNITDIDDKIIKRAR 117 >gi|3242657|dbj|BAA29032.1| cysteinyl-tRNA synthetase [Mus musculus] Length = 486 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 128/239 (53%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 176 EEFHKDMEAPNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 235 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 236 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 295 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 296 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHL 355 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 356 TIAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 407 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + V Y NITDIDDKII Sbjct: 1 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-QYDVFYCMNITDIDDKIIR 59 Query: 82 RARQEH 87 RARQ + Sbjct: 60 RARQNY 65 >gi|21269877|ref|NP_644802.1| cysteinyl-tRNA synthetase, cytoplasmic isoform a [Homo sapiens] gi|9837517|gb|AAG00579.1|AF288207_1 cysteinyl-tRNA synthetase [Homo sapiens] gi|119622943|gb|EAX02538.1| cysteinyl-tRNA synthetase, isoform CRA_c [Homo sapiens] Length = 726 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|332024052|gb|EGI64270.1| Cysteinyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior] Length = 732 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/231 (39%), Positives = 128/231 (55%), Gaps = 20/231 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 +F KD L L P R + ++ ++I IQ II +G+AYE+N + FD Sbjct: 206 EFHKDMDALNILKPNVLTRVSEYVEEIITFIQQIIDNGYAYESNGSVYFDVDKFDKQEKH 265 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG S + E + T + KK+ DF LWK S EP WESPWGRGR Sbjct: 266 SYAKLVPEAYGDTSSLEEGEGDLSTTADKLSEKKSVTDFALWKCSKAGEPWWESPWGRGR 325 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S G+ DIH GG+DL FPHH+NE+AQ+ ++H+G L Sbjct: 326 PGWHIECSVMASAICGESLDIHTGGVDLKFPHHDNELAQAEACFNNSHWVRYFLHSGHLT 385 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + G KMSKS NF+TI + L KK+ R +RLA L+ +++ +D++ Sbjct: 386 IAGCKMSKSLKNFVTIQDAL--KKYSSRQ-----LRLAFLLHSWKDTLDYS 429 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 7/83 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R+ F + + Y CGPTVYD +H+G+AR I FD+L Y+G Sbjct: 20 LRLYNSLTREKEIFVPQFGNRVLWYSCGPTVYDASHMGHARSYISFDIL------YFGYD 73 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII+RARQ + Sbjct: 74 -ILYVMNITDIDDKIIKRARQNY 95 >gi|303304987|ref|NP_001181926.1| cysteinyl-tRNA synthetase, cytoplasmic isoform e [Homo sapiens] Length = 809 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 306 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 365 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 366 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 425 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 426 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 485 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 486 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 111 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 171 D-VFYCMNITDIDDKIIKRARQNH 193 >gi|194391202|dbj|BAG60719.1| unnamed protein product [Homo sapiens] Length = 809 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 306 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 365 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 366 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 425 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 426 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 485 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 486 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 111 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 171 D-VFYCMNITDIDDKIIKRARQNH 193 >gi|60302812|ref|NP_001012601.1| cysteinyl-tRNA synthetase, cytoplasmic [Gallus gallus] gi|82231219|sp|Q5F408|SYCC_CHICK RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|60098591|emb|CAH65126.1| hypothetical protein RCJMB04_3o5 [Gallus gallus] Length = 748 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 131/241 (54%), Gaps = 26/241 (10%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSIP 160 +F KD L L P R + ++P+++ ++ I+ +G+ Y +N + FDT S Sbjct: 222 EFHKDMEALNVLPPDVLTRVSEYVPEIVAFVKKIVDNGYGYVSNGSVYFDTVKFGSSEKH 281 Query: 161 NYGSFSRRKIDEQKM-----------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 +Y + +QK R+ EK+ +P DF LWK S P EP W+SPWG Sbjct: 282 SYAKLVPEAVGDQKALQEGEGDLSISADRLCEKH---SPNDFALWKSSKPGEPSWDSPWG 338 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 +GRPGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + ++H G Sbjct: 339 KGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFENDNWVRYFLHTG 398 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L + G KMSKS NFITI + L+ A +RLA LM +++ +D++ + Sbjct: 399 HLTIAGCKMSKSLKNFITIKDALQKHT-------ARQLRLAFLMHSWKDTLDYSSNTMES 451 Query: 330 A 330 A Sbjct: 452 A 452 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R FQ + + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 RLCLYNSLTRNKEIFQPQNGKKVTWYCCGPTVYDASHMGHARSYISFDILRRILRDYF-K 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+R RQ + Sbjct: 87 FDVFYCMNITDIDDKIIKRTRQNY 110 >gi|927229|gb|AAA73901.1| cysteinyl-tRNA synthetase [Homo sapiens] Length = 595 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 180 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 239 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 240 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 299 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 300 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 359 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 360 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 409 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+ Sbjct: 3 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIK 61 Query: 82 RARQEH 87 RARQ H Sbjct: 62 RARQNH 67 >gi|224050868|ref|XP_002197995.1| PREDICTED: cysteinyl-tRNA synthetase [Taeniopygia guttata] Length = 831 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 131/241 (54%), Gaps = 26/241 (10%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSIP 160 +F KD L L P R + ++P+++ ++ I+ +G+ Y +N + FDT S Sbjct: 305 EFHKDMEALNVLPPDVLTRVSEYVPEIVDFVKKIVDNGYGYVSNGSVYFDTMKFDASEKH 364 Query: 161 NYGSFSRRKIDEQKM-----------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 +Y + +QK R+ EK+ +P DF LWK S P EP W+SPWG Sbjct: 365 SYAKLVPEAVGDQKALQEGEGDLSISADRLSEKH---SPNDFALWKSSKPGEPSWDSPWG 421 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNG 269 +GRPGWHIECSAM LG+ DIHGGG DL FPHH+NE+AQS + ++H G Sbjct: 422 KGRPGWHIECSAMGGSVLGESMDIHGGGFDLRFPHHDNELAQSEAYFENDHWVRYFLHTG 481 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + Sbjct: 482 HLTIAGCKMSKSLKNFITIKDAL--KKHTARQ-----LRLAFLMHSWKDTLDYSNNTMES 534 Query: 330 A 330 A Sbjct: 535 A 535 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R FQ + + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLCLYNSLTRSKEVFQPQNGKKVLWYCCGPTVYDASHMGHARSYISFDILRRILRDYF-K 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 170 YDVFYCMNITDIDDKIIKRARQNH 193 >gi|164425498|ref|XP_960203.2| hypothetical protein NCU05642 [Neurospora crassa OR74A] gi|157070948|gb|EAA30967.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 806 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/327 (32%), Positives = 157/327 (48%), Gaps = 61/327 (18%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F D L L P R T ++PQ++ ++ II G AYEA+ + FD + Sbjct: 212 LTKTMEKAFADDMEALNVLPPDVITRVTEYVPQIVAFVEQIIQKGFAYEADGSVYFDIGA 271 Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKYH---------KKNPADFILWKRSTPMEPGWESPWG 209 G+ R E K T + E+ KK DF LWK+S P EP W SPWG Sbjct: 272 FEKAGNTYARLRPESKNDTALQEEGEGSLSTALGGKKRSGDFALWKKSKPGEPYWPSPWG 331 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS------CCADRIEKTAN 263 GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS CC K + Sbjct: 332 AGRPGWHIECSVMASDKLGEQMDIHSGGIDLAFPHHDNELAQSEAYFHDCC-----KGEH 386 Query: 264 IWI----HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 W+ H G L++ G KMSKS NF TI + L + ++ A +R+ L++ + + Sbjct: 387 TWVKYFLHMGHLSIAGSKMSKSLKNFQTIQDALAS------TYTARNMRIVFLLSRWNDG 440 Query: 320 IDFTVQRLTEAE-----------ILLSKWPQTSTSKGIIDPAVL---------------- 352 ++ + +A+ + ++ + S GI D ++ Sbjct: 441 VEISPDMRKQADNWETTLDNFFTNIKARLSEVDASSGIKDLSLSEDAGARGLLEDFEQAK 500 Query: 353 ----SALYNDLNTVSAIQALHKLARES 375 +AL N +T +A+Q L KL R + Sbjct: 501 KDLDAALRNSFDTPTAMQVLLKLVRNA 527 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 1/61 (1%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I Y CGPTVYD +H+G+AR + D++ R+L +Y+ K V +V N TD+DDKII +AR+ Sbjct: 26 ISWYACGPTVYDLSHLGHARNYVSTDIIRRILMHYFDYK-VNFVMNYTDVDDKIIIKARR 84 Query: 86 E 86 + Sbjct: 85 K 85 >gi|114635650|ref|XP_001156338.1| PREDICTED: cysteinyl-tRNA synthetase isoform 7 [Pan troglodytes] Length = 683 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|332835585|ref|XP_001155951.2| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic isoform 4 [Pan troglodytes] Length = 739 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 236 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 295 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 296 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 355 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 356 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 415 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 416 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 465 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 41 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 100 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 101 D-VFYCMNITDIDDKIIKRARQNH 123 >gi|194383970|dbj|BAG59343.1| unnamed protein product [Homo sapiens] Length = 739 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 236 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 295 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 296 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 355 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 356 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 415 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 416 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 465 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 41 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 100 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 101 D-VFYCMNITDIDDKIIKRARQNH 123 >gi|154333641|ref|XP_001563077.1| cysteinyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060087|emb|CAM37400.1| putative cysteinyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 780 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/330 (35%), Positives = 163/330 (49%), Gaps = 47/330 (14%) Query: 102 KNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-- 159 K + F +D RL P R T ++PQ++ +Q II +G AY + FDT + Sbjct: 238 KYERAFFEDMQRLGIRDPDIVSRVTEYVPQVVEFVQKIIDNGFAYVGETSVFFDTEAYIR 297 Query: 160 -----PNYGSFSRRKIDEQKMG------TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 P R E++M T+ E K++ DF LWK S P EP W SPW Sbjct: 298 AGHDYPKLKPGGDRNTTEEEMAEGEGTLTKAVEG-EKRSSNDFALWKFSKPGEPRWPSPW 356 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECS M+S LG+ DIH GG DL FPHH+NE AQS + + N ++H Sbjct: 357 GAGRPGWHIECSVMASDVLGENMDIHSGGWDLKFPHHDNECAQSEACNLHNQWVNYFLHC 416 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 G L+++G KMSKS NFITI + L+ R+ +RL L + + +P++F+ Q L Sbjct: 417 GHLHIKGLKMSKSLKNFITIRQALDDLGVTPRT-----MRLLFLASPWYKPMNFSDQSLD 471 Query: 329 EA--------------EILL--SKWPQTST---------SKGI-IDPAVLSALYNDLNTV 362 EA +I+L W T K I + AV +AL ++ +TV Sbjct: 472 EAKEKERVLRAFFGSVDIVLRADNWKATQGVNTYDRELLGKCIEAEAAVHAALQDNFDTV 531 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHIL 392 A+Q L L + N LL SA ++ Sbjct: 532 VALQQLMSLV--AATNQYLLSGERPSATLV 559 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+ N+L + +F D +R Y CGPTVYD +H+G+AR + FD++ R++ Y+G Sbjct: 38 LKVMNSLTETLEDFAPRDGRVVRWYTCGPTVYDLSHMGHARAYLTFDIIRRIMEDYFG-Y 96 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 97 SVLYQMNITDIDDKIIKRAR 116 >gi|328952801|ref|YP_004370135.1| cysteine synthase [Desulfobacca acetoxidans DSM 11109] gi|328453125|gb|AEB08954.1| cysteine synthase [Desulfobacca acetoxidans DSM 11109] Length = 770 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 213/470 (45%), Gaps = 50/470 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +NT R F +Y GPT+ + + +AR ++V D+L R L Y + V Sbjct: 309 FFNTEGRSKQAFLPQHLGQASIYTDGPTMDGYLTLTDARRLMVADLLRRYLEYRGYQ--V 366 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 V N+TD+DD+ I A +P+N T + +F D L P+AT Sbjct: 367 KQVVNLTDLDDRTIRGAVA--AGLPLN----AFTQQYIDEFFADIDALRLKRAEVYPKAT 420 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHK 185 +HI M+ L++ ++ G+AYE + FD S YG S +++ ++G V + Y K Sbjct: 421 DHIDDMVALVKRLLEKGYAYEKLRSVYFDISRFRGYGKLSHVNLEKIRLGKTVDLDDYEK 480 Query: 186 KNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 NP DF L KR+ E + + WG RPGWH+EC+AM+ +LG+ FDI GG +LI Sbjct: 481 DNPCDFTLLKRAKLGELKLGLYYPTEWGNVRPGWHLECAAMALKHLGESFDIVTGGSNLI 540 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHEN IA C A + A W+HN + +S G T+ L +T +G Sbjct: 541 FPHHENVIA-ICEAVSGKPLARYWLHNESVLGVMAAAEESEGP-TTVRRLFQTGVWG--- 595 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEA-------EILLSKWPQTSTSK---------G 345 +R +L THYR+ + + + L A ++ L + + + K Sbjct: 596 ---VDLRFLLLATHYRKTLHLSNEALDAARRSRRRLDLFLERLNRVNGGKPEGDLPERLA 652 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARE-----------STKNHDLLPIFNASAHILGI 394 ++ +AL +DLN A+ AL RE + ++ F +LG Sbjct: 653 RLESEFTAALDDDLNIAGALAALFNFQREINIWMDRGRLAEAEAEAIIDQFRQFDRVLG- 711 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 V AIE+ ++ER + F+ AD IR++L G + D Sbjct: 712 -VMNFPTPAPTDAAIEEKLREREEARGRQDFARADEIRQELAVLGIEVLD 760 >gi|297687912|ref|XP_002821443.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 6 [Pongo abelii] Length = 662 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 158 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 217 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +Q + K++P DF LWK S P EP W PWG+GR Sbjct: 218 SYGKLVPEAVGDQNALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 277 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 278 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 337 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 338 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 388 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+RARQ H Sbjct: 1 MGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIKRARQNH 46 >gi|147899657|ref|NP_001080786.1| cysteinyl-tRNA synthetase, cytoplasmic [Xenopus laevis] gi|82241490|sp|Q7ZWR2|SYCC_XENLA RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28436794|gb|AAH46746.1| Cars-prov protein [Xenopus laevis] Length = 747 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 ++ KD L L P R + ++P+++ +Q I+ +G+ Y +N + F T+ + Sbjct: 221 EYHKDMEALNVLTPDVLTRVSEYVPEIVAFVQKIVDNGYGYVSNGSVYFSTAKFHDSENH 280 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 Y + +QK + K++P DF LWK S P EP WESPWG+GR Sbjct: 281 FYAKLVPEAVGDQKALQEGEGDLSISADRLSEKQSPNDFALWKASKPGEPSWESPWGKGR 340 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 PGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFDNDHWVRYFLHTGHLT 400 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L+ A +RLA LM +++ +D++ + A Sbjct: 401 IAGCKMSKSLKNFITIKDALQKNT-------ARQLRLAFLMHSWKDTLDYSNNTMESA 451 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R F + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 LRLYNSLTRSKELFFPQVGRKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-KY 86 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 87 DVFYCMNITDIDDKIIKRARQRH 109 >gi|258652760|ref|YP_003201916.1| cysteine--tRNA ligase [Nakamurella multipartita DSM 44233] gi|258555985|gb|ACV78927.1| Cysteine--tRNA ligase [Nakamurella multipartita DSM 44233] Length = 392 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 102/292 (34%), Positives = 149/292 (51%), Gaps = 20/292 (6%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 S RMYVCG T YD H+G+A + D +LR G V+ RN+TD+DD ++ A Sbjct: 41 SPARMYVCGITPYDVTHLGHAATFVWADAAQAVLRSI-GVHTVS-CRNVTDVDD-VLTAA 97 Query: 84 RQEHPSIPINDAISIITSKNTQQFV--KDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL 141 H A+ Q+F+ +D L PTH PRA + +PQ+ L ++ Sbjct: 98 ADAHGRHYDEHAV-------YQEFLFEQDMAALRVARPTHTPRARHFVPQVRQLAAALLA 150 Query: 142 HGHAYEANNEIIF-DTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 GHAY+ + + F ++ G ++ PE +++P D +W+ ST Sbjct: 151 TGHAYQRDGSVYFRGRGAVAAAGLSGDLAVELSAEFGDAPEDPAREDPFDVPVWRPSTDR 210 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 +P W SPWG GRPGWH EC+AMS LG D+ GG DL+FPHH + A A + Sbjct: 211 DPAWPSPWGWGRPGWHAECAAMSMATLGAGVDVLIGGQDLVFPHHAYQAALVQAASGVAP 270 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 A +H G ++ +GRKM+KS GN + I++LL RS P +R+ +L Sbjct: 271 FARRAMHVGAVHYQGRKMAKSTGNLVLISDLL-------RSCPPAAVRMLLL 315 >gi|297687908|ref|XP_002821441.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 4 [Pongo abelii] Length = 738 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 212 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 271 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +Q + K++P DF LWK S P EP W PWG+GR Sbjct: 272 SYGKLVPEAVGDQNALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 331 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 332 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 391 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 392 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 442 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+ Sbjct: 36 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIK 94 Query: 82 RARQEH 87 RARQ H Sbjct: 95 RARQNH 100 >gi|75075917|sp|Q4R550|SYCC_MACFA RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|67970866|dbj|BAE01775.1| unnamed protein product [Macaca fascicularis] Length = 748 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y ++ + FDT+ + Sbjct: 222 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSDGSVYFDTAKFASSEKH 281 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 282 SYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 341 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 342 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 401 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 402 ITGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYF-K 86 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 87 FDVFYCMNITDIDDKIIKRARQNH 110 >gi|167526279|ref|XP_001747473.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773919|gb|EDQ87553.1| predicted protein [Monosiga brevicollis MX1] Length = 531 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/333 (32%), Positives = 160/333 (48%), Gaps = 50/333 (15%) Query: 85 QEHPSIPINDAI-SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 ++H S + AI + +T ++ D L PT R T ++ +++ I+ II +G Sbjct: 107 KQHGSTVEDHAIFARLTQHWEAEYFADMAALNVRPPTVLTRVTEYVEEIVTFIEQIISNG 166 Query: 144 HAYEANNEIIFDTSSIPNYGSFSR----RKIDEQKM---------GTRVPEKYHKKNPAD 190 +AY +N + FD+ P Y + + + E G+ K++P D Sbjct: 167 YAYASNGSVYFDS---PRYAASDAHDYPKLVPEASQDVASLADAEGSLSSSDNEKRSPYD 223 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK S P EP W+SPWG+GRPGWHIECSAM G DIH GG+DL FPHH+NEIA Sbjct: 224 FALWKASKPGEPAWDSPWGKGRPGWHIECSAMCHAAFGDKIDIHSGGIDLCFPHHDNEIA 283 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 QS + N + H+G L +EG KMSKS NFITI + L+ A IRL Sbjct: 284 QSEAFYDQGQWCNYFCHSGHLTIEGLKMSKSLKNFITIKDALKKHN-------ATQIRLT 336 Query: 311 MLMTHYREPIDFTVQRLTEAEILLSKWPQ--------------------TSTSKGIIDPA 350 L + +D++ + EA +L ++ + T KG++ Sbjct: 337 FLTHGWNSTLDYSEAGMVEATVLEKQFKEFFYTVNALVRRDEGQPFRDMTENDKGLLQTF 396 Query: 351 VL------SALYNDLNTVSAIQALHKLARESTK 377 + AL ++ +T +AI A+ L E+ K Sbjct: 397 GVHRQRLHEALCDNFDTATAIAAMRSLMTEANK 429 >gi|167540088|ref|XP_001733555.1| cysteinyl-tRNA synthetase, cytoplasmic [Entamoeba dispar SAW760] gi|165893955|gb|EDR22070.1| cysteinyl-tRNA synthetase, cytoplasmic, putative [Entamoeba dispar SAW760] Length = 405 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 135/247 (54%), Gaps = 4/247 (1%) Query: 50 FDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE-RARQEHPSIPINDAISIITSKNTQQFV 108 ++ ++ L + G+ +TD+ K ++ R ++ I + +A K + F Sbjct: 102 YEKVFPTLDSFNGQNTTEVFARMTDVIGKYLDIRQKESVDPIEMKEAARAHARKYEELFF 161 Query: 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR 168 D L P R T IP++I IQ II +G+AYE+N + FDT+S G + Sbjct: 162 ADCDALGIRRPDVISRVTEFIPEVIAFIQKIIDNGYAYESNGSVYFDTASFRKAG-MTYG 220 Query: 169 KIDEQKMG-TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 +++ +G P K N DF LWK+S EP WES WG GRPGWHIECSAM+S+ Sbjct: 221 RLEPWSVGDVDAPADGEKHNKNDFALWKKSKAGEPSWESQWGPGRPGWHIECSAMASNVF 280 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 G DIH GG DL FPHHENE+AQS ++ E ++H G L++ G KMSKS NFI Sbjct: 281 GDTLDIHSGGEDLKFPHHENELAQSEAYFNKKESWVRYFLHTGHLHINGLKMSKSLKNFI 340 Query: 287 TINELLE 293 N+LL+ Sbjct: 341 PSNKLLK 347 Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 39 AHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +H+G+AR + D+ R+L Y+G + + + NITD+DDKII +AR+ Sbjct: 1 SHLGHARTYLSTDIFRRILEDYFGYQVIQCM-NITDVDDKIILKARK 46 >gi|297687904|ref|XP_002821439.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 2 [Pongo abelii] gi|297687906|ref|XP_002821440.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 3 [Pongo abelii] Length = 748 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 222 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 281 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +Q + K++P DF LWK S P EP W PWG+GR Sbjct: 282 SYGKLVPEAVGDQNALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 341 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 342 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 401 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 402 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|62896787|dbj|BAD96334.1| cysteine-tRNA ligase isoform a variant [Homo sapiens] Length = 726 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNSVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 452 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFMPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|297687902|ref|XP_002821438.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 1 [Pongo abelii] Length = 831 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 305 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 364 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +Q + K++P DF LWK S P EP W PWG+GR Sbjct: 365 SYGKLVPEAVGDQNALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 424 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 425 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 484 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 485 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 535 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 111 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 170 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 171 D-VFYCMNITDIDDKIIKRARQNH 193 >gi|158521179|ref|YP_001529049.1| cysteine synthase [Desulfococcus oleovorans Hxd3] gi|158510005|gb|ABW66972.1| cysteine synthase [Desulfococcus oleovorans Hxd3] Length = 771 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 109/331 (32%), Positives = 165/331 (49%), Gaps = 21/331 (6%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K + ++NTL R+ F + +Y CGPTV+ +G R M+ D+L R L Y Sbjct: 300 KSGVVLFNTLTREKEAFAPLAQGKASIYSCGPTVHARMDLGQCRRMVFADLLCRYLVYRG 359 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V ++ NITD DD+ IE A++ + + T F D L Sbjct: 360 FE--VRHIVNITDFDDRTIEGAQKAGMDL------AAFTGTYIDLFKADLKTLRVHPADA 411 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 P A+ P+M+ L++ ++ G AYE + FD +S YG S ++ ++G V Sbjct: 412 YPLASQEAPEMVALVEKLVDRGVAYEKLRSVYFDIASAEGYGGLSNIDTNKIRLGATVDL 471 Query: 181 EKYHKKNPADFILWKRS--TPMEPGW--ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 ++Y K+NP DF L KR+ + ++ GW ++ WG RP HI+C+A+S YLG FDIH G Sbjct: 472 DEYEKENPRDFTLLKRAKMSELKQGWYLKTRWGNVRPSLHIQCAAISRKYLGDRFDIHTG 531 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 DL+FPHHENEIA + A E A W+H + LE T+ + L+ Sbjct: 532 SRDLVFPHHENEIAIARAATGRE-PARYWVHCDSV-LESDDSVHWKTARTTLEQALDM-G 588 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 F GR +R ++ HYR+ + F+ R+ Sbjct: 589 FTGRQ-----LRYWLISGHYRKALSFSADRI 614 >gi|134099214|ref|YP_001104875.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|291007173|ref|ZP_06565146.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|133911837|emb|CAM01950.1| cysteinyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 375 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 149/306 (48%), Gaps = 18/306 (5%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+Y CG T YD H+G+A + DVL R+LR E V RN+TD+DD +++ A + Sbjct: 19 RVYACGVTPYDVTHLGHAATFVWVDVLARVLRLLDVEPEVC--RNVTDVDD-VLDAASER 75 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + D + I + QF D L P H+PRA ++ +I L ++ G AY Sbjct: 76 AGAY--YDRFAAI---HQFQFDDDMAALNVRPPEHEPRAHRYVESVIRLACGLLGRGAAY 130 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 + + F +P R + ++ G R P+ K++ D +W+ S P P W Sbjct: 131 SSGGSVYFRGHDVPARAGVERLEALRLARQFGGR-PDDPAKEDEFDVAVWQASEPGHPSW 189 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 +SPWG GRPGWH EC AMS LG DIH GG DL FPHH A + I A Sbjct: 190 DSPWGPGRPGWHAECVAMSLSVLGAGVDIHAGGADLRFPHHAYHAAMAEAFTGITPYARS 249 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 W H G + + G KM+KS GN + + +LL + IRL +L ++ D+ Sbjct: 250 WFHVGTVAVAGEKMAKSAGNLVLLGDLLAEHS-------SDTIRLMILDRPWQSSWDYLP 302 Query: 325 QRLTEA 330 Q+ A Sbjct: 303 QQADAA 308 >gi|158259887|dbj|BAF82121.1| unnamed protein product [Homo sapiens] Length = 647 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 126/237 (53%), Gaps = 20/237 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 223 FHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHS 282 Query: 162 YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + +QK + K++P DF LWK S P EP W PWG+GRP Sbjct: 283 YGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRP 342 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L + Sbjct: 343 GWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTI 402 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L KK R +RLA LM ++ +D++ + A Sbjct: 403 AGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKGTLDYSSNTMESA 452 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 28 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 88 D-VFYCMNITDIDDKIIKRARQNH 110 >gi|242001294|ref|XP_002435290.1| cysteinyl-tRNA synthetase, putative [Ixodes scapularis] gi|215498620|gb|EEC08114.1| cysteinyl-tRNA synthetase, putative [Ixodes scapularis] Length = 819 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 134/247 (54%), Gaps = 22/247 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYG 163 ++F KD T L L P R + ++P+++ + I+ G YE+ + FDT+ + G Sbjct: 214 EEFYKDMTALNVLPPDVVTRVSEYVPEIVDYVAKIVEAGFGYESKGSVYFDTARFDGDPG 273 Query: 164 SF----------SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 F R+ + E + V K+N DF LWK S P EP W+SPWG GRP Sbjct: 274 HFYAKLVPEAFGDRKALREGEGDLSVAGDDEKRNANDFALWKASKPGEPAWDSPWGAGRP 333 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S+ LG DIH GG DL FPHH+NEIAQ+ + ++H+G L + Sbjct: 334 GWHIECSVMASNLLGSSLDIHTGGYDLKFPHHDNEIAQAEAYFGNDHWVRYFLHSGHLTI 393 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 G KMSKS NF++I + L RS A +RLA L+ +++ +D++ + A Sbjct: 394 AGCKMSKSLKNFVSIRDAL-------RSHSARRLRLAFLLHSWKDTLDYSDNTMESA--- 443 Query: 334 LSKWPQT 340 ++W +T Sbjct: 444 -AQWEKT 449 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R+ F + Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 24 RLRLYNSLSREKEVFVPQTGKRVLWYNCGPTVYDASHMGHARSYISFDILRRVLADYFGY 83 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII RARQ + Sbjct: 84 D-IFYVMNITDIDDKIIRRARQNY 106 >gi|119479397|ref|XP_001259727.1| cysteinyl-tRNA synthetase [Neosartorya fischeri NRRL 181] gi|119407881|gb|EAW17830.1| cysteinyl-tRNA synthetase [Neosartorya fischeri NRRL 181] Length = 808 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/313 (34%), Positives = 163/313 (52%), Gaps = 29/313 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T K ++F+KD L L P R T + ++ ++ I+ + Y ++ + FD + Sbjct: 247 LTKKYEERFMKDMRDLNVLDPDELTRVTEYGAEIADFVEKIVENKFGYVTDDGSVYFDIT 306 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + N G S S K+ + G + K++ +DF LWK S P EP W S W Sbjct: 307 AFENAGHPYARLEPWSRSDNKLLAEGEGALTKKTTEKRSASDFALWKASKPGEPSWTSSW 366 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA-----DRIEKTAN 263 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N Sbjct: 367 GRGRPGWHIECSAMASAKLGKQMDIHSGGVDLAFPHHDNELAQSEAYWTHGHSHTDQWVN 426 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +R+ ++ T Sbjct: 427 YFLHMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWRDGVEIT 481 Query: 324 VQRLTEAEILLSKWPQTSTSKGI--IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 + ++ + W + I DPA LS + +T + A + A+++T +H L Sbjct: 482 EELVSAG----NSWEDKVNNFFIKMKDPATLSGQTSGSDTT--LPAALEAAKKATFDH-L 534 Query: 382 LPIFNASAHILGI 394 FN + I Sbjct: 535 CDSFNTQGAMSAI 547 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R F IDP + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 26 LKIWNSLTRSKNPFIPIDPEGKKVTWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII RARQ+H Sbjct: 85 HFDVKFIMNITDVDDKIILRARQQH 109 >gi|332267015|ref|XP_003282484.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic, partial [Nomascus leucogenys] Length = 656 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y ++ + FDT+ + Sbjct: 212 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSSGSVYFDTAKFASSEKH 271 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +QK + K++P DF LWK S P EP W PWG+GR Sbjct: 272 SYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 331 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 332 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 391 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 392 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 442 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+ Sbjct: 36 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIK 94 Query: 82 RARQEH 87 RARQ H Sbjct: 95 RARQNH 100 >gi|159126589|gb|EDP51705.1| cysteinyl-tRNA synthetase [Aspergillus fumigatus A1163] Length = 808 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/313 (34%), Positives = 163/313 (52%), Gaps = 29/313 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T K ++F+KD L L P R T + ++ ++ I+ + Y ++ + FD + Sbjct: 247 LTKKYEERFMKDMRDLNVLDPDELTRVTEYGAEIADFVEKIVENKFGYVTDDGSVYFDIT 306 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + N G S S K+ + G + K++ +DF LWK S P EP W S W Sbjct: 307 AFENAGHPYARLEPWSRSDNKLVAEGEGALTKKTTEKRSASDFALWKASKPGEPSWTSSW 366 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA-----DRIEKTAN 263 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N Sbjct: 367 GRGRPGWHIECSAMASAKLGKQMDIHSGGVDLAFPHHDNELAQSEAYWSHGHPHTDQWVN 426 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +R+ ++ T Sbjct: 427 YFLHMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWRDGVEIT 481 Query: 324 VQRLTEAEILLSKWPQTSTSKGI--IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 + ++ + W + I DPA LS + +T + A + A+++T +H L Sbjct: 482 EELVSAG----NSWEDKVNNFFIKMKDPATLSGQTSGSDTT--LPAALEAAKKATFDH-L 534 Query: 382 LPIFNASAHILGI 394 FN + I Sbjct: 535 CDSFNTQGAMSAI 547 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R F IDP + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 26 LKIWNSLTRSKNPFIPIDPEGKKVTWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII RARQ+H Sbjct: 85 HFDVKFIMNITDVDDKIILRARQQH 109 >gi|297687910|ref|XP_002821442.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 5 [Pongo abelii] Length = 739 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F +D L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ + Sbjct: 235 EFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKH 294 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + +Q + K++P DF LWK S P EP W PWG+GR Sbjct: 295 SYGKLVPEAVGDQNALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGR 354 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 355 PGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLT 414 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + A Sbjct: 415 IAGCKMSKSLKNFITIKDAL--KKHSARQ-----LRLAFLMHSWKDTLDYSSNTMESA 465 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 41 RLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKF 100 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 101 D-VFYCMNITDIDDKIIKRARQNH 123 >gi|70997892|ref|XP_753678.1| cysteinyl-tRNA synthetase [Aspergillus fumigatus Af293] gi|66851314|gb|EAL91640.1| cysteinyl-tRNA synthetase [Aspergillus fumigatus Af293] Length = 808 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/313 (34%), Positives = 163/313 (52%), Gaps = 29/313 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T K ++F+KD L L P R T + ++ ++ I+ + Y ++ + FD + Sbjct: 247 LTKKYEERFMKDMRDLNVLDPDELTRVTEYGAEIADFVEKIVENKFGYVTDDGSVYFDIT 306 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + N G S S K+ + G + K++ +DF LWK S P EP W S W Sbjct: 307 AFENAGHPYARLEPWSRSDNKLVAEGEGALTKKTTEKRSASDFALWKASKPGEPSWTSSW 366 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA-----DRIEKTAN 263 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N Sbjct: 367 GRGRPGWHIECSAMASAKLGKQMDIHSGGVDLAFPHHDNELAQSEAYWSHGHPHTDQWVN 426 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +R+ ++ T Sbjct: 427 YFLHMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWRDGVEIT 481 Query: 324 VQRLTEAEILLSKWPQTSTSKGI--IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 + ++ + W + I DPA LS + +T + A + A+++T +H L Sbjct: 482 EELVSAG----NSWEDKVNNFFIKMKDPATLSGQTSGSDTT--LPAALEAAKKATFDH-L 534 Query: 382 LPIFNASAHILGI 394 FN + I Sbjct: 535 CDSFNTQGAMSAI 547 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R F IDP + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 26 LKIWNSLTRSKNPFIPIDPEGKKVTWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII RARQ+H Sbjct: 85 HFDVKFIMNITDVDDKIILRARQQH 109 >gi|327259955|ref|XP_003214801.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like [Anolis carolinensis] Length = 826 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 131/242 (54%), Gaps = 26/242 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-----SSI 159 +++ D L L P R + +IP+++ +Q I+ +G+ Y +N + FDT S Sbjct: 299 EEYHNDMAALNVLPPDVLTRVSEYIPEIVDFVQKIVDNGYGYVSNGSVYFDTVKFDASEK 358 Query: 160 PNYGSFSRRKIDEQKM-----------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 +Y + +QK R+ EK+ +P DF LWK S EP WESPW Sbjct: 359 HSYAKLVPEAVGDQKALQEGEGDLSVSADRLSEKH---SPNDFALWKSSKLGEPSWESPW 415 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G+GRPGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + ++H Sbjct: 416 GKGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFDNDHWVRYFLHT 475 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 G L + G KMSKS NFITI + L KK R +RLA LM +++ +D++ + Sbjct: 476 GHLTIAGCKMSKSLKNFITIKDAL--KKHTARQ-----LRLAFLMHSWKDTLDYSCNTME 528 Query: 329 EA 330 A Sbjct: 529 SA 530 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ +YN+L R +FQ + + + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + Sbjct: 106 KLCLYNSLTRNKDKFQPQNGNKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYF-K 164 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 165 YDVFYCMNITDIDDKIIKRARQNH 188 >gi|50304753|ref|XP_452332.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641465|emb|CAH01183.1| KLLA0C03025p [Kluyveromyces lactis] Length = 766 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 139/247 (56%), Gaps = 22/247 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII------FDTSS 158 Q++ +D L L PT R + ++P+++ ++ II +G+AY ++ + FD+S Sbjct: 241 QRYDQDMAALNVLPPTVTTRVSEYVPEIVQFVETIISNGYAYATSDGSVYFDTAKFDSSE 300 Query: 159 IPNYGS---FSRRKIDEQKMG----TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 Y +++ ++D + G + K K++ DF LWK S P EP W SPWG+G Sbjct: 301 GHEYAKCQPWNKGQLDLIQDGEGSLSDFSAKNGKRSANDFALWKASKPGEPEWPSPWGKG 360 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGF 270 RPGWHIECS M+S G V DIH GG+DL FPHH+NE+AQS C D + N ++H G Sbjct: 361 RPGWHIECSVMASDIHGSVIDIHTGGIDLAFPHHDNELAQSEACYDN-HQWINYFLHTGH 419 Query: 271 LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 L++EG+KMSKS NFITI E L K+ R +RLA + +DF L E Sbjct: 420 LHIEGQKMSKSLKNFITIEEAL--NKYSARQ-----LRLAFASVQWNNQLDFKDSLLNEV 472 Query: 331 EILLSKW 337 + L S + Sbjct: 473 KSLESSF 479 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YNTL R EF S + Y CGPTVYD +H+G+AR + D+ R+L+ Y+G Sbjct: 41 LKLYNTLTRNKEEFVTHSNSKCVTWYSCGPTVYDASHMGHARNYVSIDINRRILQDYFGY 100 Query: 64 KCVTYVRNITDIDDKIIERARQ 85 + +V+N+TDIDDKII RARQ Sbjct: 101 D-INFVQNVTDIDDKIIIRARQ 121 >gi|308198189|ref|XP_001387132.2| cysteinyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054] gi|149389073|gb|EAZ63109.2| cysteinyl-tRNA synthetase [Pichia stipitis CBS 6054] Length = 776 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 138/249 (55%), Gaps = 18/249 (7%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSI---PN 161 +F +D RL L T R + +IP +I I II +G Y + + FDT+ PN Sbjct: 248 KFDQDMARLNVLPSTVTTRVSEYIPDIIEFIDKIIENGFGYPTKDGSVYFDTAKFENDPN 307 Query: 162 YGSFSRRKIDEQKM-------GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 + + ++ M G+ + KK+ ADF LWK S P EP W S WG GRPG Sbjct: 308 HDYAKLQPWNKGDMSLINDGEGSLTTGQDTKKSSADFALWKASKPGEPSWPSKWGEGRPG 367 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++H+G L+++ Sbjct: 368 WHIECSVMASDITGQTMDIHSGGIDLCFPHHDNELAQSEAYFDNKQWVNYFMHSGHLHIQ 427 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 G+KMSKS NFITI + LE F R +RL ++ + +P+DF ++E + + Sbjct: 428 GQKMSKSLKNFITIEQALE--DFSSRQ-----LRLVFALSSWEKPLDFKDSLISEVKTIE 480 Query: 335 SKWPQTSTS 343 S + + T+ Sbjct: 481 SAFSKFFTN 489 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R TEF I P +I Y CGPTVYD +H+G+AR + D+ R+ + Y+G Sbjct: 38 LKIYNSLTRSKTEFVPIVPGHITWYCCGPTVYDHSHMGHARNYVSTDICRRIFQDYFGYN 97 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +++N+TDIDDKII ARQ++ Sbjct: 98 -VKFIQNVTDIDDKIIIAARQQY 119 >gi|323335869|gb|EGA77147.1| YNL247W-like protein [Saccharomyces cerevisiae Vin13] Length = 767 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDT---SSIP 160 Q+F D L L PT R + ++P++I +Q II +G+AY ++ + FDT P Sbjct: 243 QKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSP 302 Query: 161 NYG-----SFSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 N+ +++ ++D G + KK+ DF LWK S EP WESPWG+GR Sbjct: 303 NHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGR 362 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L KKF R +RLA + +DF Sbjct: 423 IEGQKMSKSLKNFITIQEAL--KKFSPRQ-----LRLAFASVQWNNQLDF 465 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 6/86 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRM---YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +K+YN+L R EF I S R Y CGPTVYD +H+G+AR + D+ R+++ Y+ Sbjct: 36 LKLYNSLTRSKVEF--IPQSGNRXVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYF 93 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G V +V+N+TDIDDKII RARQ + Sbjct: 94 GYD-VQFVQNVTDIDDKIILRARQNY 118 >gi|28856175|gb|AAH48039.1| Cars protein [Danio rerio] Length = 652 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 133/251 (52%), Gaps = 20/251 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEI 152 N S++ ++ KD L L P R + ++P+++ ++ I+ +G+ YE+N + Sbjct: 208 NSIFSLLPKYWEGEYHKDMEALNVLPPDVLTRVSEYVPEIVEFVKKIVDNGYGYESNGSV 267 Query: 153 IFDTS---SIP--NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTP 199 FDT+ S P +Y + +QK + K++ DF LWK S P Sbjct: 268 YFDTAKFDSCPAHSYAKLVPEAVGDQKALQEGEGDLSISADRLSEKRSQNDFALWKASKP 327 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+SPWG GRPGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + Sbjct: 328 GEPSWDSPWGMGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFESD 387 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 ++H G L + G KMSKS NFITI + L A +RLA LM +++ Sbjct: 388 YWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALAKHT-------ARQLRLAFLMHSWKDT 440 Query: 320 IDFTVQRLTEA 330 +D++ + A Sbjct: 441 LDYSNNTMESA 451 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + Sbjct: 27 KLRLYNSLTRTKEVFVPQKGNRVLWYCCGPTVYDASHMGHARSYISFDILRRILKNYF-K 85 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ + Sbjct: 86 YDVFYCMNITDIDDKIIKRARQNY 109 >gi|6324082|ref|NP_014152.1| hypothetical protein YNL247W [Saccharomyces cerevisiae S288c] gi|1730840|sp|P53852|SYC_YEAST RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1255971|emb|CAA65497.1| unnamed protein product [Saccharomyces cerevisiae] gi|1302287|emb|CAA96154.1| unnamed protein product [Saccharomyces cerevisiae] gi|285814418|tpg|DAA10312.1| TPA: hypothetical protein YNL247W [Saccharomyces cerevisiae S288c] Length = 767 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDT---SSIP 160 Q+F D L L PT R + ++P++I +Q II +G+AY ++ + FDT P Sbjct: 243 QKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSP 302 Query: 161 NYG-----SFSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 N+ +++ ++D G + KK+ DF LWK S EP WESPWG+GR Sbjct: 303 NHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGR 362 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L KKF R +RLA + +DF Sbjct: 423 IEGQKMSKSLKNFITIQEAL--KKFSPRQ-----LRLAFASVQWNNQLDF 465 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + + Y CGPTVYD +H+G+AR + D+ R+++ Y+G Sbjct: 36 LKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYFGY 95 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQ + Sbjct: 96 D-VQFVQNVTDIDDKIILRARQNY 118 >gi|151944300|gb|EDN62578.1| conserved protein [Saccharomyces cerevisiae YJM789] Length = 767 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDT---SSIP 160 Q+F D L L PT R + ++P++I +Q II +G+AY ++ + FDT P Sbjct: 243 QKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSP 302 Query: 161 NYG-----SFSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 N+ +++ ++D G + KK+ DF LWK S EP WESPWG+GR Sbjct: 303 NHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGR 362 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L KKF R +RLA + +DF Sbjct: 423 IEGQKMSKSLKNFITIQEAL--KKFSPRQ-----LRLAFASVQWNNQLDF 465 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + + Y CGPTVYD +H+G+AR + D+ R+++ Y+G Sbjct: 36 LKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYFGY 95 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQ + Sbjct: 96 D-VQFVQNVTDIDDKIILRARQNY 118 >gi|325093822|gb|EGC47132.1| cysteinyl-tRNA synthetase [Ajellomyces capsulatus H88] Length = 806 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 98/269 (36%), Positives = 146/269 (54%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H S + SI +T K +F++D L L P R T ++P Sbjct: 212 DVQDVLLEYLDSIHGSSIRGEDRSIFTKLTKKYEDRFMQDVRDLNVLDPDTVTRVTEYMP 271 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ I+ H Y ++ + FD ++ G S++R K+ + G Sbjct: 272 EIVSFVERIVKHKFGYVTSDGSVYFDITAFEAAGNSYARLEPWNRHDTKLHAEGEGALTK 331 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL Sbjct: 332 KTMEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQMDIHSGGIDL 391 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CA + N ++H G L+++G KMSKS NF TI E L+ Sbjct: 392 AFPHHDNELAQSEAYWHETCAH--DHWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 449 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L++ +++ I+ T Sbjct: 450 GDWTPRS-----LRIVFLLSAWKDGIEIT 473 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 6/85 (7%) Query: 5 IKIYNTLERKITEFQAIDP--SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DP + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPIGRKVTWYACGPTVYDDAHLGHARNYVTNDILRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V ++ NITD+DDK+ RQ H Sbjct: 85 KFDVEFIMNITDVDDKV---GRQHH 106 >gi|256272357|gb|EEU07340.1| YNL247W-like protein [Saccharomyces cerevisiae JAY291] Length = 767 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDT---SSIP 160 Q+F D L L PT R + ++P++I +Q II +G+AY ++ + FDT P Sbjct: 243 QKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSP 302 Query: 161 NYG-----SFSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 N+ +++ ++D G + KK+ DF LWK S EP WESPWG+GR Sbjct: 303 NHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGR 362 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L KKF R +RLA + +DF Sbjct: 423 IEGQKMSKSLKNFITIQEAL--KKFSPRQ-----LRLAFASVQWNNQLDF 465 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + + Y CGPTVYD +H+G+AR + D+ R+++ Y+G Sbjct: 36 LKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYFGY 95 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQ + Sbjct: 96 D-VQFVQNVTDIDDKIILRARQNY 118 >gi|257056300|ref|YP_003134132.1| cysteinyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] gi|256586172|gb|ACU97305.1| cysteinyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] Length = 382 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/359 (30%), Positives = 173/359 (48%), Gaps = 43/359 (11%) Query: 25 NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA- 83 +R+Y CG T YD H+G+A + D L R+LR E V RN+TD+DD + A Sbjct: 30 RVRIYACGITPYDVTHLGHATTFVWVDTLRRVLRVLGVEPVV--CRNVTDVDDVLDAAAH 87 Query: 84 ----RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 R +H + + +F D + L P ++PRA ++ +I L + Sbjct: 88 RAGIRYDH-----------YAAFHELRFTDDMSALGVSIPDYEPRAHRYVDTVIRLAAAL 136 Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-------QKMGTRVPEKYHKKNPADFI 192 G AY + + F S+ +R ++DE ++ G R P+ K++P D Sbjct: 137 AESGAAYVRDGGVYFRGRSV-----VARSQLDEGTALRLAREYGGR-PDDPAKEDPFDVA 190 Query: 193 LWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 +W+ + P P W+SPWG GRPGWH EC AMS+ G DIH GG DL FPHH A + Sbjct: 191 VWQPAEPEHPAWDSPWGPGRPGWHAECVAMSATTFGPCVDIHAGGADLRFPHHAYHAAMA 250 Query: 253 CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 + A W G + ++G KM+KS N + + +LL+T +PA V+RLA++ Sbjct: 251 EAFTGVTPYARAWFRVGTVTVDGEKMAKSADNLVLVRDLLQT-------YPAAVVRLAII 303 Query: 313 MTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-GIIDPAVLSA----LYNDLNTVSAIQ 366 + +P ++ L A L Q + + G D A ++ L +DL+ +A+ Sbjct: 304 DRPWAQPWEYAPGVLDVAAARLEDLHQAAGRRVGHTDEAGVAQLRQLLADDLDVPAALD 362 >gi|256825221|ref|YP_003149181.1| cysteinyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] gi|310947190|sp|C7NHQ9|MSHC_KYTSD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|256688614|gb|ACV06416.1| cysteinyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] Length = 438 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 113/364 (31%), Positives = 176/364 (48%), Gaps = 45/364 (12%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 ++++T IT +YVCG T YD H+G+A + FD++ R LR Sbjct: 20 RVHDTARGAITPLTPRPGQEAGLYVCGITPYDATHLGHAATYLTFDLVNRALRA--AGHP 77 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQP 123 V +V+N+TD+D+ ++ERA + D + + S+ Q F D L +AP Sbjct: 78 VRFVQNVTDVDEPLLERAER--------DGVHWEELASREIQLFRDDMAALRIIAPDAYV 129 Query: 124 RATNHIPQMIYLIQNIILHGHAYE------------ANNEIIFDTSSIPNYGSFSR---- 167 A IP + I+ ++ G AY + ++ D + +P +G S Sbjct: 130 GAVEGIPSDVAAIRAMLESGRAYRVPAEDAAADAGESPADVYLDLAQVPTFGEVSHWTPT 189 Query: 168 --RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSS 224 ++ + G P++ K++ D +LW+ EP WE G GRPGWHIEC+ ++ Sbjct: 190 QMMEVFADRGGD--PDRAGKRDRLDPLLWRAHREGEPHWEGGSLGAGRPGWHIECTTIAR 247 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +LG F + GGG DL+FPHHE AQ+ D + A ++H + L+G KMSKS G Sbjct: 248 DHLGTPFLVQGGGDDLVFPHHEMSAAQTRALTD--DAFAEHYVHQAMVGLDGEKMSKSKG 305 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---PQT 340 N + ++ L + G PA IRLA+L HYR ++T L A L +W QT Sbjct: 306 NLVLVSRL----RAAGED-PA-AIRLALLSQHYRTAWEWTDAHLEAARQRLDRWRHAAQT 359 Query: 341 STSK 344 +T+ Sbjct: 360 ATAS 363 >gi|207341909|gb|EDZ69841.1| YNL247Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 610 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSI---P 160 Q+F D L L PT R + ++P++I +Q II +G+AY ++ + FDT P Sbjct: 243 QKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSP 302 Query: 161 NYG-----SFSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 N+ +++ ++D G + KK+ DF LWK S EP WESPWG+GR Sbjct: 303 NHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGR 362 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L KKF R +RLA + +DF Sbjct: 423 IEGQKMSKSLKNFITIQEAL--KKFSPRQ-----LRLAFASVQWNNQLDF 465 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + + Y CGPTVYD +H+G+AR + D+ R+++ Y+G Sbjct: 36 LKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYFGY 95 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQ + Sbjct: 96 D-VQFVQNVTDIDDKIILRARQNY 118 >gi|169646833|ref|NP_001112372.1| cysteinyl-tRNA synthetase, cytoplasmic [Danio rerio] Length = 824 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 133/251 (52%), Gaps = 20/251 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEI 152 N S++ ++ KD L L P R + ++P+++ ++ I+ +G+ YE+N + Sbjct: 287 NSIFSLLPKYWEGEYHKDMEALNVLPPDVLTRVSEYVPEIVEFVKKIVDNGYGYESNGSV 346 Query: 153 IFDTS---SIP--NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTP 199 FDT+ S P +Y + +QK + K++ DF LWK S P Sbjct: 347 YFDTAKFDSCPAHSYAKLVPEAVGDQKALQEGEGDLSISADRLSEKRSQNDFALWKASKP 406 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 EP W+SPWG GRPGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + Sbjct: 407 GEPSWDSPWGMGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFEND 466 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 ++H G L + G KMSKS NFITI + L A +RLA LM +++ Sbjct: 467 YWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALAKHT-------ARQLRLAFLMHSWKDT 519 Query: 320 IDFTVQRLTEA 330 +D++ + A Sbjct: 520 LDYSNNTMESA 530 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+++YN+L R F + + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ + Sbjct: 106 KLRLYNSLTRTKEVFVPQKGNRVLWYCCGPTVYDASHMGHARSYISFDILRRILKNYF-K 164 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ + Sbjct: 165 YDVFYCMNITDIDDKIIKRARQNY 188 >gi|238878314|gb|EEQ41952.1| cysteinyl-tRNA synthetase [Candida albicans WO-1] Length = 781 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 142/250 (56%), Gaps = 20/250 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDT------- 156 +++ +D RL L P+ R + ++P +I + I+ +G+AY+ ++ + FDT Sbjct: 251 KRYNEDMARLNVLPPSVTTRVSEYMPDIIEFVDKIVTNGYAYKTDDGSVYFDTVKYEHSQ 310 Query: 157 ---SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 + + + I++ + V K+N +DF LWK S P EP W+S WG+GRP Sbjct: 311 HDYAKLQPWSKGDMSLINDGEGSLSVSNT--KRNASDFALWKASKPGEPAWDSKWGKGRP 368 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++HNG L++ Sbjct: 369 GWHIECSVMASDITGENMDIHSGGIDLCFPHHDNELAQSEAYFDNKQWVNYFMHNGHLHI 428 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 +G+KMSKS NFITI+E L F R +RL + + +P+DF ++E + + Sbjct: 429 QGQKMSKSLKNFITIDEALND--FSARQ-----LRLVFALNAWEKPLDFKDSLISEVKSI 481 Query: 334 LSKWPQTSTS 343 S + + T+ Sbjct: 482 ESTFSKFFTN 491 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +KIYN+L R EF P +I Y CGPTVYD +H+G+AR + D+ R+L+ Y+ Sbjct: 43 KPTLKIYNSLTRSKNEFYPNKPGHITWYSCGPTVYDHSHMGHARNYVSTDICRRILQDYF 102 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + +V+N+TDIDDKII ARQ++ Sbjct: 103 GYN-IKFVQNVTDIDDKIIIAARQQY 127 >gi|115944413|ref|XP_001195853.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 694 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 130/242 (53%), Gaps = 20/242 (8%) Query: 96 ISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155 S++ +F D L L R + ++P++I +Q II G YE+N + F Sbjct: 201 FSVLPQHWEAEFHSDMNALNVLPADVLTRVSEYVPEVIDYVQKIIDRGFGYESNGSVYFT 260 Query: 156 TSSIPNYGSFSRRKIDEQKMGTRV------------PEKYHKKNPA-DFILWKRSTPMEP 202 TS N S K+ + G + P++ +K A DF LWK S P EP Sbjct: 261 TSKFDNDDSHHYAKLVPEAYGDQAALAEGEGDLSISPDQLQEKQSANDFALWKNSKPGEP 320 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 WESPWG GRPGWHIECSAM+S LG+ DIH GG DL FPHH+NE+AQ+ + Sbjct: 321 EWESPWGMGRPGWHIECSAMASSILGESMDIHTGGADLKFPHHDNELAQAEAHYGNDDWV 380 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 ++H+G L ++G KMSKS NFITI + LET + + IRL L+ +++ +D+ Sbjct: 381 RYFLHSGHLTIQGCKMSKSLKNFITIKQALET-------YSSRQIRLVFLLHSWKDTLDY 433 Query: 323 TV 324 + Sbjct: 434 ST 435 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +++ +N+L R+ F + + Y CGPTVYD AH+G+AR I FD+L R++ Y+ Sbjct: 23 KAQLRHFNSLTRQKELFVPQEGKRVSWYSCGPTVYDAAHMGHARSYISFDILRRVMTKYF 82 Query: 62 GEKCVTYVRNITDIDDKIIERAR 84 VTYV NITD+DDKII+RAR Sbjct: 83 NYD-VTYVMNITDVDDKIIKRAR 104 >gi|68467189|ref|XP_722256.1| hypothetical protein CaO19.12397 [Candida albicans SC5314] gi|68467418|ref|XP_722142.1| hypothetical protein CaO19.4931 [Candida albicans SC5314] gi|46444091|gb|EAL03368.1| hypothetical protein CaO19.4931 [Candida albicans SC5314] gi|46444215|gb|EAL03491.1| hypothetical protein CaO19.12397 [Candida albicans SC5314] Length = 781 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 142/250 (56%), Gaps = 20/250 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDT------- 156 +++ +D RL L P+ R + ++P +I + I+ +G+AY+ ++ + FDT Sbjct: 251 KRYNEDMARLNVLPPSVTTRVSEYMPDIIEFVDKIVTNGYAYKTDDGSVYFDTVKYEHSQ 310 Query: 157 ---SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 + + + I++ + V K+N +DF LWK S P EP W+S WG+GRP Sbjct: 311 HDYAKLQPWSKGDMSLINDGEGSLSVSNT--KRNASDFALWKASKPGEPAWDSKWGKGRP 368 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++HNG L++ Sbjct: 369 GWHIECSVMASDITGENMDIHSGGIDLCFPHHDNELAQSEAYFDNKQWVNYFMHNGHLHI 428 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 +G+KMSKS NFITI+E L F R +RL + + +P+DF ++E + + Sbjct: 429 QGQKMSKSLKNFITIDEALND--FSARQ-----LRLVFALNAWEKPLDFKDSLISEVKSI 481 Query: 334 LSKWPQTSTS 343 S + + T+ Sbjct: 482 ESTFSKFFTN 491 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +KIYN+L R EF P +I Y CGPTVYD +H+G+AR + D+ R+L+ Y+ Sbjct: 43 KPTLKIYNSLTRSKNEFYPNKPGHITWYSCGPTVYDHSHMGHARNYVSTDICRRILQDYF 102 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + +V+N+TDIDDKII ARQ++ Sbjct: 103 GYN-IKFVQNVTDIDDKIIIAARQQY 127 >gi|312374234|gb|EFR21828.1| hypothetical protein AND_16292 [Anopheles darlingi] Length = 744 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 23/248 (9%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 +F KD L L R + ++P+++ I+ II G AYEAN + FD + Sbjct: 214 EFHKDMRALNVLPADVLTRVSEYVPEIVTYIERIIERGLAYEANGSVYFDVARFDGRPEH 273 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG + + E + T K++P DF LWK S EP W+SPWG+GR Sbjct: 274 HYAKLVPEAYGDARQLQEGEGDLSTGEDRLGEKRSPNDFALWKASKAGEPWWDSPWGKGR 333 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S G DIH GG+DL FPHH+NE+AQS D + ++H G L Sbjct: 334 PGWHIECSAMASAICGDYLDIHTGGVDLKFPHHDNELAQSEAHDGSSEWVKYFLHTGHLT 393 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTE 329 + G KMSKS NF+TI + LE A +RLA L+ +++ +D+ T++ + Sbjct: 394 IAGCKMSKSLKNFVTIQQALERHT-------ATQLRLAFLLHSWKDTLDYSDNTMEMAVQ 446 Query: 330 AEILLSKW 337 E LL+++ Sbjct: 447 YERLLNEF 454 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F D N++ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 19 RLHLYNSLTRRKELFVPRDGRNVQWYSCGPTVYDASHMGHARSYISFDILRRVLSDYFGY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ H Sbjct: 79 N-VLYVMNITDIDDKIIKRARQNH 101 >gi|212535374|ref|XP_002147843.1| cysteinyl-tRNA synthetase [Penicillium marneffei ATCC 18224] gi|210070242|gb|EEA24332.1| cysteinyl-tRNA synthetase [Penicillium marneffei ATCC 18224] Length = 798 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 132/238 (55%), Gaps = 18/238 (7%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T K ++F++D L L P R T + PQ+ ++ I+ + AY ++ + FD Sbjct: 240 LTRKYEERFMRDLRDLNVLDPDELTRVTEYGPQIAQFVERIVENKFAYVTSDGSVYFDIK 299 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + + G S S K+ + G + K +P+DF LWK S P EP W S W Sbjct: 300 AFEDAGFPYARLEPWSRSDGKLVAEGEGALTSKTTEKHSPSDFALWKASKPGEPSWSSQW 359 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC---ADRIEKTANIW 265 G+GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N + Sbjct: 360 GKGRPGWHIECSAMASDRLGKSIDIHSGGIDLAFPHHDNELAQSEAYWNTHTHDQWINYF 419 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +H G L+++G KMSKS NF TI E LE K + RS +R+ L+ ++ I+ T Sbjct: 420 LHMGHLSIQGSKMSKSLKNFTTIREALERKDWTSRS-----LRIVFLLGNWNSGIEIT 472 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 15/109 (13%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L + F +DP+ + Y CGPTVYD +H+G+AR + D++ R+LR Y+ Sbjct: 24 LKIYNSLTKTKVPFVPVDPNGRKVTWYACGPTVYDDSHLGHARNYVTTDIIRRILRDYF- 82 Query: 63 EKCVTYVRNITDIDDKIIERARQE---------HPSIPINDAISIITSK 102 + V +V NITD+DDKII R RQ+ HP+I DA + T+K Sbjct: 83 KFDVHFVMNITDVDDKIILRGRQQYLFNKFVSAHPTI---DATVLDTAK 128 >gi|115741226|ref|XP_001190614.1| PREDICTED: similar to Cars protein, partial [Strongylocentrotus purpuratus] Length = 596 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 20/245 (8%) Query: 96 ISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155 S++ +F D L L R + ++P++I +Q II G YE+N + F Sbjct: 201 FSVLPQHWEAEFHSDMNALNVLPADVLTRVSEYVPEVIDYVQKIIDRGFGYESNGSVYFT 260 Query: 156 TSSIPNYGSFSRRKIDEQKMGTRV------------PEKYHKKNPA-DFILWKRSTPMEP 202 TS N S K+ + G + P++ +K A DF LWK S P EP Sbjct: 261 TSKFDNDDSHHYAKLVPEAYGDQAALAEGEGDLSISPDQLQEKQSANDFALWKNSKPGEP 320 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 WESPWG GRPGWHIECSAM+S LG+ DIH GG DL FPHH+NE+AQ+ + Sbjct: 321 EWESPWGMGRPGWHIECSAMASSILGESMDIHTGGADLKFPHHDNELAQAEAHYGNDDWV 380 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 ++H+G L ++G KMSKS NFITI + LET + + IRL L+ +++ +D+ Sbjct: 381 RYFLHSGHLTIQGCKMSKSLKNFITIKQALET-------YSSRQIRLVFLLHSWKDTLDY 433 Query: 323 TVQRL 327 + + Sbjct: 434 STATM 438 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +++ +N+L R+ F + + Y CGPTVYD AH+G+AR I FD+L R++ Y+ Sbjct: 23 KAQLRHFNSLTRQKELFVPQEGKRVSWYSCGPTVYDAAHMGHARSYISFDILRRVMTKYF 82 Query: 62 GEKCVTYVRNITDIDDKIIERAR 84 VTYV NITD+DDKII+RAR Sbjct: 83 NYD-VTYVMNITDVDDKIIKRAR 104 >gi|58332582|ref|NP_001011365.1| cysteinyl-tRNA synthetase, cytoplasmic [Xenopus (Silurana) tropicalis] gi|82232096|sp|Q5M7N8|SYCC_XENTR RecName: Full=Cysteinyl-tRNA synthetase, cytoplasmic; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56788842|gb|AAH88531.1| cysteinyl-tRNA synthetase [Xenopus (Silurana) tropicalis] Length = 747 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 20/238 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 ++ +D L L P R + ++P+++ +Q I+ +G+ Y +N + F T+ Sbjct: 221 EYHRDMEALNVLPPDVLTRVSEYVPEIVAFVQRIVDNGYGYVSNGSVYFSTAKFHASEKH 280 Query: 162 -YGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 Y + +QK + K++P DF LWK S P EP WESPWG+GR Sbjct: 281 YYAKLVPEAVGDQKALQEGEGDLSISADRLSEKQSPNDFALWKASKPGEPSWESPWGKGR 340 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+ LG+ DIHGGG DL FPHH+NE+AQS + ++H G L Sbjct: 341 PGWHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFDNDHWVRYFLHTGHLT 400 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 + G KMSKS NFITI + L+ A +RLA LM +++ +D++ + A Sbjct: 401 IAGCKMSKSLKNFITIKDALQKNT-------ARQLRLAFLMHAWKDTLDYSSNTMESA 451 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R F D + + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 28 LRLYNSLTRSKELFVPQDGNKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-KY 86 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII+RARQ H Sbjct: 87 DVFYCMNITDIDDKIIKRARQRH 109 >gi|323352855|gb|EGA85157.1| YNL247W-like protein [Saccharomyces cerevisiae VL3] Length = 637 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSI---P 160 Q+F D L L PT R + ++P++I +Q II +G+AY ++ + FDT P Sbjct: 243 QKFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSP 302 Query: 161 NYG-----SFSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 N+ +++ ++D G + KK+ DF LWK S EP WESPWG+GR Sbjct: 303 NHDYAKCQPWNKGQLDLINDGEGSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGR 362 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L KKF R +RLA + +DF Sbjct: 423 IEGQKMSKSLKNFITIQEAL--KKFSPRQ-----LRLAFASVQWNNQLDF 465 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + + Y CGPTVYD +H+G+AR + D+ R+++ Y+G Sbjct: 36 LKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYFGY 95 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQ + Sbjct: 96 D-VQFVQNVTDIDDKIILRARQNY 118 >gi|46123171|ref|XP_386139.1| hypothetical protein FG05963.1 [Gibberella zeae PH-1] Length = 800 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 130/239 (54%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F D L L P R T ++PQ+ ++ I+ G AYEA+ + FD ++ Sbjct: 212 LTQSMEKLFTDDMDALNVLRPDVITRVTEYVPQIADFVKTIVDKGFAYEADGSVYFDITA 271 Query: 159 IPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + + E+ G+ KKNP DF LWK+S EP W SPWG Sbjct: 272 FEKAGNTYARLRPDNRNDKSLQEEGEGSLSKGLSGKKNPGDFALWKKSKAGEPFWSSPWG 331 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKT-ANI 264 GRPGWHIECS M+ LG DIH GG+DL FPHH+NE+AQS C + E T N Sbjct: 332 DGRPGWHIECSVMAGAVLGSNMDIHSGGIDLAFPHHDNELAQSEAYFCEHGKGEHTWVNY 391 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T ++ + +R+ LM + + ++ + Sbjct: 392 FLHMGHLSISGSKMSKSLKNFQTIQDALAT------TYSSRGMRIVFLMGRWNDGVEIS 444 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 13/138 (9%) Query: 3 KKIKIYNTLERKI-TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +K+YN+L+ F I+ + Y CGPTVYD +H+G+AR + D++ R+L +Y+ Sbjct: 2 ESLKLYNSLKPGAPVPFVPIEKGKVSWYACGPTVYDKSHLGHARNYVSTDIIRRILMHYF 61 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G + V +V NITDIDDKII +AR++ ++ + + + KD R LA Sbjct: 62 GFE-VKFVMNITDIDDKIIIKARRQR----------LLELEKNKNYSKDELRDLALA-AF 109 Query: 122 QPRATNHIPQMIYLIQNI 139 Q A + +P ++ ++I Sbjct: 110 QAYAKSSLPLLLKDGEDI 127 >gi|328716861|ref|XP_001946257.2| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 1 [Acyrthosiphon pisum] gi|328716863|ref|XP_003246061.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like isoform 2 [Acyrthosiphon pisum] Length = 723 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 132/237 (55%), Gaps = 22/237 (9%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F + + L L P R + ++P+ I I+ II +G+AYE+N + FD ++ + Sbjct: 204 FHSNMSSLNILPPDKLSRVSEYVPETIAYIETIIKNGYAYESNGSVYFDVAAFDSQPIHH 263 Query: 162 --------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + E + T + K++P DF LWK+S EP W+SPWG+GRP Sbjct: 264 YAKLVPEAYGDSKSLQDGEGDLTTSAVNE--KRSPNDFALWKKSKKGEPWWDSPWGKGRP 321 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S LG+ DIH GG+DL FPHH+NEIAQ+ E+ ++H+G L + Sbjct: 322 GWHIECSVMASCILGQTLDIHTGGIDLKFPHHDNEIAQAEAYYNNEEWVRYFLHSGHLTI 381 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 G KMSKS NFITI + L+ + +RLA L+ +++ +D++ + A Sbjct: 382 SGCKMSKSLKNFITIEDALKNN-------TSRQLRLAFLLHSWKDTLDYSESTMESA 431 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K++N+L RK F + + + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ Sbjct: 19 RLKLFNSLTRKKEIFIPKNGNKVHWYSCGPTVYDASHMGHARSYITFDILRRVLKDYFHY 78 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ H Sbjct: 79 D-VEYVMNITDIDDKIIKRARQLH 101 >gi|115401840|ref|XP_001216508.1| hypothetical protein ATEG_07887 [Aspergillus terreus NIH2624] gi|114190449|gb|EAU32149.1| hypothetical protein ATEG_07887 [Aspergillus terreus NIH2624] Length = 777 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 159/319 (49%), Gaps = 49/319 (15%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 +T K ++F +D L LAP R T ++PQ++ ++ I+ +G Y + + FD Sbjct: 209 LTQKFERRFFEDMNALNVLAPDQLTRVTEYVPQIVRFVEKIVANGFGYATPDGSVYFDID 268 Query: 158 SIPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 S G ++SR R + G+ + K+N F LWK S P EP W SPW Sbjct: 269 SFEKAGHNYSRLEPWNKNDRALQADGEGSLSKGRSMKRNENHFALWKASKPGEPAWPSPW 328 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ-----SCCADRIEKTAN 263 G GRPGWHIECSAM+S +GK DIH GG+DL FPHH+NE+AQ S +++ T N Sbjct: 329 GYGRPGWHIECSAMASEVIGKTIDIHSGGVDLRFPHHDNELAQSEAYWSTPGCQVQWT-N 387 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +IH G L + G KMSKS N+ TI L K++ RS +R+ L+ +++ I+ T Sbjct: 388 YFIHMGQLRIRGLKMSKSLKNYTTIRTFLSQKEWSARS-----LRICFLLMPWQDGIEIT 442 Query: 324 VQRLTEAEI------------LLSKWPQTSTSK----GIIDPAVL-----------SALY 356 L +A + L W T T+ GI D +L +AL Sbjct: 443 -DELMKAVVSWEDKLNNFFLKSLDIWKSTKTATMQEPGIADQQLLNALDKAKADVDTALC 501 Query: 357 NDLNTVSAIQALHKLARES 375 + NT + ++ L L ES Sbjct: 502 DSFNTPAVMRILSDLVTES 520 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 42/61 (68%), Gaps = 2/61 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++KIYN+L R +F +DP+ + Y CGPTVY+ AH+G+A+ + D++ R+++ Y+ Sbjct: 24 RLKIYNSLTRTKNDFIPLDPTGKVVTWYGCGPTVYEDAHLGHAKNYVSTDIIRRIMQDYF 83 Query: 62 G 62 G Sbjct: 84 G 84 >gi|159490726|ref|XP_001703324.1| predicted protein [Chlamydomonas reinhardtii] gi|158280248|gb|EDP06006.1| predicted protein [Chlamydomonas reinhardtii] Length = 665 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 22/257 (8%) Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG 163 ++F++D L C P R + +IP++I + II +G AY +N + FDT + Sbjct: 224 AREFLEDMDALGCRRPDVLTRVSEYIPEIIEYVTRIIGNGMAYASNGSVYFDTQN----- 278 Query: 164 SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 FS E G E K++P DF LWK + P EP WESPWG GRPGWHIECSAM+ Sbjct: 279 -FSAALAAE---GESNFETSEKRSPQDFALWKAAKPGEPAWESPWGVGRPGWHIECSAMA 334 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA---DRIEKTANIWIHNGFLNLEGRKMSK 280 S +G DIH GG DL FPHH+NE+AQ+ D ++ N ++H G L++EG KMSK Sbjct: 335 SSIIGSRLDIHTGGEDLRFPHHDNELAQAEAYYHHDGCKQWVNYFLHCGHLHIEGLKMSK 394 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 S NF+TI E L + F R +RL + + + + + Q TE ++ + Q Sbjct: 395 SLKNFVTIREALAS--FNARQ-----LRLMFCLQPWNKTMMYGEQSRTEMKV---REAQL 444 Query: 341 STSKGIIDPAVLSALYN 357 G +D A+ ++ N Sbjct: 445 RNFFGNVDAAIRNSSVN 461 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 4/84 (4%) Query: 5 IKIYNT-LERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +YN+ ++ K+ A P++ I Y CGPTVYD AH+G+AR + FD++ R+L Y+ Sbjct: 25 LMLYNSFVDEKVPFVPAAGPTSKQITWYACGPTVYDVAHMGHARNYLSFDIVRRVLEDYF 84 Query: 62 GEKCVTYVRNITDIDDKIIERARQ 85 G C+ V N+TD+DDKII RAR+ Sbjct: 85 GYNCLM-VMNVTDVDDKIILRARR 107 >gi|242792877|ref|XP_002482046.1| cysteinyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500] gi|218718634|gb|EED18054.1| cysteinyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500] Length = 828 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 130/238 (54%), Gaps = 18/238 (7%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T K +F+KD L L P R T + PQ+ ++ I+ + AY ++ + FD Sbjct: 270 LTKKYEGRFMKDLRDLNVLDPDELTRVTEYGPQIAQFVERIVENKFAYVTSDGSVYFDIK 329 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G S S K+ + GT + K + +DF LWK S P EP W S W Sbjct: 330 AFEEAGFPYARLEPWSKSDGKLIAEGEGTLTSKTTEKHSLSDFALWKASKPGEPSWSSQW 389 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC---ADRIEKTANIW 265 G+GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N + Sbjct: 390 GKGRPGWHIECSAMASDRLGKTIDIHSGGIDLAFPHHDNELAQSEAYWNTHTHDQWINYF 449 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +H G L+++G KMSKS NF TI E LE K + RS +R+ L+ H+ I+ T Sbjct: 450 LHMGHLSIQGSKMSKSLKNFTTIREALERKDWTSRS-----LRIVFLLGHWNGGIEIT 502 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 15/109 (13%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L + F IDP+ + Y CGPTVYD +H+G+AR + D++ R+LR Y+ Sbjct: 54 LKIYNSLTKSKVPFVPIDPNGRKVTWYACGPTVYDDSHLGHARNYVTTDIIRRILRDYF- 112 Query: 63 EKCVTYVRNITDIDDKIIERARQE---------HPSIPINDAISIITSK 102 + V +V NITD+DDKII R RQ+ HP+I DA + T+K Sbjct: 113 KFDVHFVMNITDVDDKIILRGRQQYLFNKFVSAHPTI---DATVLDTAK 158 >gi|196019398|ref|XP_002118971.1| hypothetical protein TRIADDRAFT_62948 [Trichoplax adhaerens] gi|190577490|gb|EDV18543.1| hypothetical protein TRIADDRAFT_62948 [Trichoplax adhaerens] Length = 257 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 144/252 (57%), Gaps = 17/252 (6%) Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 SPW GRPGWHIECS MS YLG FDIHGGG+DL+F HHENEIAQS C + K AN W Sbjct: 5 SPWSDGRPGWHIECSVMSKKYLGDNFDIHGGGIDLVFXHHENEIAQSVCESKSNKFANYW 64 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +HNGFL + KMSKS NFIT+ ELL+ K GG +R L +YR+P+DF + Sbjct: 65 VHNGFLTVNSEKMSKSLKNFITVKELLD-KGVGGAE-----LRYFYLTANYRKPLDFNEK 118 Query: 326 RLTEAEILLSKWPQTSTSKGI--------IDPAVLSALYNDLNTVSAIQALHKLARESTK 377 L +++ +SK+ + I + L + +DLNT A+ +H+LA ++ Sbjct: 119 ALLDSKKSISKFQKCIQKFNIKFDEISYELPDEFLKYISDDLNTPLALSFIHQLANKALD 178 Query: 378 NHD--LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 ++ ++N LG+++ ++ + I+ + L ++R L K + AD +R ++ Sbjct: 179 GNENSANDVYNC-CKFLGLDIKEKEEDIYITQEVINLAEKRKQLKIDKNWQEADKVRIEI 237 Query: 436 ESKGFILEDYKN 447 E G+ + D K+ Sbjct: 238 EKLGYKVIDIKD 249 >gi|241950257|ref|XP_002417851.1| cysteine-tRNA ligase, putative; cysteinyl-tRNA synthetase, putative [Candida dubliniensis CD36] gi|223641189|emb|CAX45566.1| cysteine-tRNA ligase, putative [Candida dubliniensis CD36] Length = 780 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 142/250 (56%), Gaps = 20/250 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDT------- 156 +++ +D RL L P+ R + ++P +I + I+ +G+AY+ ++ + FDT Sbjct: 250 KRYNEDMARLNVLPPSITTRVSEYMPDIIEFVDKIVSNGYAYKTDDGSVYFDTVKYEHSQ 309 Query: 157 ---SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 + + + I++ + V K+N +DF LWK S P EP W+S WG+GRP Sbjct: 310 HDYAKLQPWSKGDMSLINDGEGSLSVSNT--KRNASDFALWKASKPGEPAWDSKWGKGRP 367 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++HNG L++ Sbjct: 368 GWHIECSVMASDITGENMDIHSGGIDLCFPHHDNELAQSEAYFDNKQWVNYFMHNGHLHI 427 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 +G+KMSKS NFITI+E L F R +RL + + +P+DF ++E + + Sbjct: 428 QGQKMSKSLKNFITIDEAL--NDFSARQ-----LRLVFALNAWEKPLDFKDSLISEVKSI 480 Query: 334 LSKWPQTSTS 343 S + + T+ Sbjct: 481 ESTFSKFFTN 490 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K ++IYN+L R EF P +I Y CGPTVYD +H+G+AR + D+ R+L+ Y+ Sbjct: 42 KPTLRIYNSLTRSKNEFYPNKPGHITWYSCGPTVYDHSHMGHARNYVSTDICRRILQDYF 101 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + +V+N+TDIDDKII ARQ++ Sbjct: 102 GYN-IKFVQNVTDIDDKIIIAARQQY 126 >gi|39940736|ref|XP_359905.1| hypothetical protein MGG_04872 [Magnaporthe oryzae 70-15] gi|145010901|gb|EDJ95557.1| hypothetical protein MGG_04872 [Magnaporthe oryzae 70-15] Length = 803 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 133/247 (53%), Gaps = 20/247 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F D L L P R T ++PQ+ + I+ G AYE+ + FD ++ Sbjct: 213 LTRRMEADFFDDMDNLNNLRPDEITRVTEYVPQIADFVDRIVKKGFAYESEGSVYFDIAA 272 Query: 159 IPNYG-SFSRRK--------IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R K + E+ G+ K++P DF LWK+S P EP W SPWG Sbjct: 273 FEKGGNTYARLKPESRGDKALQEEGEGSLSKGAGGKRSPGDFALWKQSKPGEPYWPSPWG 332 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKT-ANI 264 GRPGWHIECS M+S LG D+H GG+DL FPHH+NE+AQS C + E T Sbjct: 333 NGRPGWHIECSVMASDRLGAQMDVHSGGIDLAFPHHDNELAQSEAYYCEHGKGEHTWVKY 392 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 ++H G L++ G KMSKS NF TI + L T ++ A +R+ +M + E ++ + Sbjct: 393 FLHMGHLSISGSKMSKSLKNFQTIKDALAT------TYSARNLRIVFMMGRWNEGVEISP 446 Query: 325 QRLTEAE 331 + +A+ Sbjct: 447 ELRVQAD 453 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 IK++N+L+ F+ + N+ Y CGPTVYD +H+G+AR + D++ R+ +Y+ Sbjct: 6 IKVHNSLQPGGPVPFEPKEKGNVSWYACGPTVYDQSHLGHARNYVSTDIIRRIFLHYFDY 65 Query: 64 KCVTYVRNITDIDDKIIERARQE 86 K V +V NITDIDDKII RAR++ Sbjct: 66 K-VKFVMNITDIDDKIIIRARRQ 87 >gi|261202288|ref|XP_002628358.1| cysteinyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081] gi|239590455|gb|EEQ73036.1| cysteinyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081] Length = 801 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 145/269 (53%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEH-PSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H SI D + + + K +F++D L L P R T ++P Sbjct: 207 DVKDVLLEYLDSVHGSSIRGEDRLIFTKLAKKYEARFMQDVRDLNVLDPDAITRVTEYMP 266 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ II H Y ++ + FD ++ G S++R K+ + G Sbjct: 267 EIVSFVERIIDHKFGYVTSDGSVYFDITAFEASGNSYARLEPWNRNDTKLQAEGEGALTK 326 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL Sbjct: 327 KTTEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQMDIHSGGIDL 386 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CAD N ++H G L+++G KMSKS NF TI E L+ Sbjct: 387 AFPHHDNELAQSEAYWHETCADH--HWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 444 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L+ +++ I+ T Sbjct: 445 GDWTPRS-----LRIVFLLGGWKDGIEIT 468 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 13/151 (8%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DPS + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPSGRTVTWYACGPTVYDDAHLGHARNYVSNDILRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDK-IIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL-ACLAPT 120 + V ++ NITD+DDK HP++ + I I S + K L A LAP Sbjct: 85 KFDVKFIMNITDVDDKHFFTEFVYSHPTVD-DKVIEIALSAYSAYLEKKLPLLEAGLAPE 143 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 R + + + + IL+G A + N + Sbjct: 144 ---RYQDEVEK----VYATILNGGALDGNGK 167 >gi|320585786|gb|EFW98465.1| cysteinyl-tRNA synthetase [Grosmannia clavigera kw1407] Length = 916 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 128/239 (53%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F D L L P R T ++PQ++ + II G AYEAN + FD + Sbjct: 223 LTQAMEKAFTDDMDALNVLRPDAVTRVTEYVPQIVAFTKGIIDKGFAYEANGSVYFDIEA 282 Query: 159 IPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + + E+ G+ K+ DF LWKRS P EP W SPWG Sbjct: 283 FERAGNTYARLRPESKNDKALQEEGEGSLSKSLAGKRRAGDFALWKRSKPGEPFWASPWG 342 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWI-- 266 GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS R + W+ Sbjct: 343 AGRPGWHIECSVMASDKLGEQMDIHSGGIDLAFPHHDNELAQSEAFFHRPGAGEHSWVRY 402 Query: 267 --HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 H G L++ G KMSKS NF TI + LET + A +R+ +++ + + ++ + Sbjct: 403 FLHMGHLSIAGSKMSKSLKNFQTIQDALET------GYTARSMRIVFMLSRWNDGLEVS 455 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%) Query: 2 KKKIKIYNTLERKI-TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + I ++N+L+ F+ + Y CGPTVYD +H+G+AR + DV+ R+LR Y Sbjct: 9 RAGIAVHNSLKPGTPVHFEPKQEDTVTWYSCGPTVYDLSHMGHARNYVSTDVIRRILRDY 68 Query: 61 YGEKCVTYVRNITDIDDKIIERARQE 86 +G K V ++ NITD+DDKII +AR++ Sbjct: 69 FGYK-VQFIMNITDVDDKIIIKARRK 93 >gi|239612172|gb|EEQ89159.1| cysteinyl-tRNA synthetase [Ajellomyces dermatitidis ER-3] Length = 801 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 145/269 (53%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEH-PSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H SI D + + + K +F++D L L P R T ++P Sbjct: 207 DVKDVLLEYLDSVHGSSIRGEDRLIFTKLAKKYETRFMQDVRDLNVLDPDAITRVTEYMP 266 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ II H Y ++ + FD ++ G S++R K+ + G Sbjct: 267 EIVSFVERIIDHKFGYVTSDGSVYFDITAFEASGNSYARLEPWNRNDTKLQAEGEGALTK 326 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL Sbjct: 327 KTTEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQMDIHSGGIDL 386 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CAD N ++H G L+++G KMSKS NF TI E L+ Sbjct: 387 AFPHHDNELAQSEAYWHETCADH--HWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 444 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L+ +++ I+ T Sbjct: 445 GDWTPRS-----LRIVFLLGGWKDGIEIT 468 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 13/151 (8%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DPS + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPSGRTVTWYACGPTVYDDAHLGHARNYVSNDILRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDK-IIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL-ACLAPT 120 + V ++ NITD+DDK HP++ + I I S + K L A LAP Sbjct: 85 KFDVKFIMNITDVDDKHFFTEFVYSHPTVD-DKVIEIALSAYSAYLEKKLPLLEAGLAPE 143 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 R + + + + IL+G A + N + Sbjct: 144 ---RYQDEVEK----VYATILNGGALDGNGK 167 >gi|240277739|gb|EER41247.1| cysteinyl-tRNA synthetase [Ajellomyces capsulatus H143] Length = 783 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 146/269 (54%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H S + SI +T K +F++D L L P R T ++P Sbjct: 215 DVQDVLLEYLDSIHGSSIRGEDRSIFTKLTKKYEDRFMQDVRDLNVLDPDTVTRVTEYMP 274 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ I+ H Y ++ + FD ++ G S++R K+ + G Sbjct: 275 EIVSFVERIVKHKFGYVTSDGSVYFDITAFEAAGNSYARLEPWNRHDTKLHAEGEGALTK 334 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LG+ DIH GG+DL Sbjct: 335 KTMEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGEQMDIHSGGIDL 394 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CA + N ++H G L+++G KMSKS NF TI E L+ Sbjct: 395 AFPHHDNELAQSEAYWHETCAH--DHWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 452 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L++ +++ I+ T Sbjct: 453 GDWTPRS-----LRIVFLLSAWKDGIEIT 476 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDP--SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DP + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPIGRKVTWYACGPTVYDDAHLGHARNYVTNDILRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V ++ NITD+DDKII R RQ H Sbjct: 85 KFDVEFIMNITDVDDKIITRGRQHH 109 >gi|295395900|ref|ZP_06806085.1| cysteine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294971173|gb|EFG47063.1| cysteine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 391 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 122/391 (31%), Positives = 188/391 (48%), Gaps = 39/391 (9%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 ++YVCG T YD H+G+A + FDVL+RL + VTYV+NITD+DD ++ERA+ Sbjct: 20 KLYVCGITPYDATHLGHASTYVAFDVLHRL--WIDAGYSVTYVQNITDVDDPLLERAQAT 77 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 + + F D L + PTH A + + + ++ G AY Sbjct: 78 GVDW------QELAREQIDLFRSDMEALRVIPPTHYIGAVEAMDIVARSVVELLDKGFAY 131 Query: 147 EANNEIIF---DTSSIPNYGSFSRRKID------EQKMGTRVPEKYHKKNPADFILWKRS 197 +N ++ D+S P +GS S D ++ G P+ K+NP D +LW+ Sbjct: 132 SLDNGDVYFKIDSSYKPPFGSVSHYDADTMAKLFAERGGD--PDVAGKENPLDPLLWRAK 189 Query: 198 TPMEPGWESPWG--RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 EP W+ P G GRPGWHIEC+A++ Y G + GGG DL FPHHE A + A Sbjct: 190 REGEPSWD-PDGLPAGRPGWHIECTAIAQEYAGLPLHVQGGGNDLAFPHHEMGAAHA-AA 247 Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH 315 A ++H G + EG KMSKS GN + +++L E + IRL +L H Sbjct: 248 WLDTPLAQSYMHTGMVGYEGEKMSKSLGNLVLVSQLRE------QGVDPMAIRLTILDHH 301 Query: 316 YREPIDFTVQRLTEAEILLSKWPQTS------TSKGIIDPAVLSALYNDLNTVSAIQALH 369 YR + L +A L +W + + SK ++ + L +DL+T +A+ + Sbjct: 302 YRSDWMYDDGALAKATERLEQWRRAAQCGSHYVSKDVV-RELRECLADDLDTPTALSLID 360 Query: 370 KLAR---ESTKNHDLLPIFNASAHILGIEVC 397 A ++T + + A +LGI++ Sbjct: 361 DWAAARDQNTSESESEAVVKAVDALLGIQLA 391 >gi|225557189|gb|EEH05476.1| cysteinyl-tRNA synthetase [Ajellomyces capsulatus G186AR] Length = 806 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/269 (36%), Positives = 145/269 (53%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H S + SI +T K +F++D L L P R T ++P Sbjct: 212 DVQDVLLEYLDSIHGSSIRGEDRSIFTKLTKKYEDRFMQDVRDLNVLDPDTVTRVTEYMP 271 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ I+ H Y ++ + FD ++ G S++R K+ + G Sbjct: 272 EIVSFVERIVKHKFGYVTSDGSVYFDITAFEAAGNSYARLEPWNRHDTKLHAEGEGALTK 331 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL Sbjct: 332 KTMEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQMDIHSGGIDL 391 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CA N ++H G L+++G KMSKS NF TI E L+ Sbjct: 392 AFPHHDNELAQSEAYWHETCAHG--HWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 449 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L++ +++ I+ T Sbjct: 450 GDWTPRS-----LRIVFLLSAWKDGIEIT 473 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 6/85 (7%) Query: 5 IKIYNTLERKITEFQAIDP--SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DP + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPIGRKVTWYACGPTVYDDAHLGHARNYVTNDILRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V ++ NITD+DDK+ RQ H Sbjct: 85 KFDVEFIMNITDVDDKV---GRQHH 106 >gi|327354912|gb|EGE83769.1| cysteinyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188] Length = 844 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 145/269 (53%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEH-PSIPINDAI--SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H SI D + + + K +F++D L L P R T ++P Sbjct: 250 DVKDVLLEYLDSVHGSSIRGEDRLIFTKLAKKYETRFMQDVRDLNVLDPDAITRVTEYMP 309 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ II H Y ++ + FD ++ G S++R K+ + G Sbjct: 310 EIVSFVERIIDHKFGYVTSDGSVYFDITAFEASGNSYARLEPWNRNDTKLQAEGEGALTK 369 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL Sbjct: 370 KTTEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQMDIHSGGIDL 429 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CAD N ++H G L+++G KMSKS NF TI E L+ Sbjct: 430 AFPHHDNELAQSEAYWHETCADH--HWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 487 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L+ +++ I+ T Sbjct: 488 GDWTPRS-----LRIVFLLGGWKDGIEIT 511 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DPS + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 61 LKIYNSLTRSKVPFVPLDPSGRTVTWYACGPTVYDDAHLGHARNYVSNDILRRIMRDYF- 119 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V ++ NITD+DDKII R RQ+H Sbjct: 120 KFDVKFIMNITDVDDKIISRGRQQH 144 >gi|121712962|ref|XP_001274092.1| cysteinyl-tRNA synthetase [Aspergillus clavatus NRRL 1] gi|119402245|gb|EAW12666.1| cysteinyl-tRNA synthetase [Aspergillus clavatus NRRL 1] Length = 808 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 159/313 (50%), Gaps = 29/313 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T K +F+KD L L P R T + ++ ++ I+ + Y ++ + FD + Sbjct: 247 LTKKYEDRFLKDMRDLNVLDPDELTRVTEYGAEIADFVEKIVANKFGYVTDDGSVYFDIN 306 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G S S K+ + G + K++ +DF LWK S P EP W S W Sbjct: 307 AFEAAGHPYARLEPWSRSDNKLLAEGEGALTKKTTEKRSASDFALWKASKPGEPSWTSSW 366 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA-----DRIEKTAN 263 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N Sbjct: 367 GRGRPGWHIECSAMASARLGKEMDIHSGGVDLAFPHHDNELAQSEAYWSHDHSHTDQWVN 426 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +R+ ++ T Sbjct: 427 YFLHMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWRDGVEIT 481 Query: 324 VQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL 381 + ++ + W + + I DPA L A + +T + A + R++ H L Sbjct: 482 EELVSAG----NSWEEKVNNFFIKIRDPATLQAQTSGTDTT--LPAALEAGRKAVHEH-L 534 Query: 382 LPIFNASAHILGI 394 FN + I Sbjct: 535 CDSFNTQGAMFAI 547 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPS--NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F IDP + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 26 LKIWNSLTRSKTPFVPIDPEAKKVTWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII RARQ+H Sbjct: 85 HFDVKFIMNITDVDDKIILRARQQH 109 >gi|302911731|ref|XP_003050554.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256731491|gb|EEU44841.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 800 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T F++D L L P R T ++PQ+ ++ I+ G AYEA + FD S+ Sbjct: 212 LTQSMEDLFMEDMDALNVLRPDVITRVTEYVPQIAKFVERIVDKGFAYEAEGSVYFDISA 271 Query: 159 IPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + + E+ G+ KK+P DF LWK+S EP W SPWG Sbjct: 272 FEKAGNTYARLRPDNRNDKSLQEEGEGSLSKNLGGKKSPGDFALWKKSKAGEPYWPSPWG 331 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKT-ANI 264 GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS C + E T N Sbjct: 332 NGRPGWHIECSVMASDVLGAQMDIHSGGIDLAFPHHDNELAQSEAYFCEHGKGEHTWVNY 391 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T ++ +R+ LM + + ++ + Sbjct: 392 FLHMGHLSISGSKMSKSLKNFQTIQDALAT------NYSPRGMRIVFLMGRWNDGVEIS 444 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 3 KKIKIYNTLERKI-TEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +K+YN+L F I+ + Y CGPTVYD +H+G+AR + D++ R+L++Y+ Sbjct: 2 ESLKLYNSLNPGAPVPFVPIEKGKVAWYACGPTVYDKSHLGHARNYVSTDIIRRILQHYF 61 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G + V +V NITDIDDKII +AR++ ++ + + + KD R LA Sbjct: 62 GFE-VNFVMNITDIDDKIIIKARRQR----------LLELEKNKTYSKDELRELALA-AF 109 Query: 122 QPRATNHIPQMI 133 + A + +P ++ Sbjct: 110 RAYAKSSLPLLL 121 >gi|224011277|ref|XP_002295413.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583444|gb|ACI64130.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 322 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 161/321 (50%), Gaps = 57/321 (17%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRL-LRYYYGEKC-----VTYVRNITDIDDKIIER 82 Y+CGPTVYD AH+G+ R ++ D+L R+ + + G YV N+TD+DDKII+R Sbjct: 2 YICGPTVYDSAHLGHGRTYVLLDILRRVAINLHKGSASHLTPPPLYVMNVTDVDDKIIQR 61 Query: 83 ----ARQEHPSIPINDAISIITSKNTQ-QFVKDTTRLACLAPTHQPRATNHIPQMIY-LI 136 A Q+ + + +A + +++ + +F +D RL L P R + H+ I I Sbjct: 62 SMENASQQSTTSTVQEADPLSLARHFEAEFWQDMDRLNVLRPDIVCRVSEHVESTIVPYI 121 Query: 137 QNIILHGHAY---------EANNEIIFD-------TSSIPNYGS----------FSRRKI 170 + I+ G AY + N + FD TS YG FS Sbjct: 122 EQILKGGMAYVIPEGDDNTQQNGSVYFDVRAFESLTSGRTKYGKLAPDVASSDFFSLEAA 181 Query: 171 DEQK---MGTRVPEKYHKKNPADFILWK--------RSTPMEPG---WESPWGRGRPGWH 216 D + G V K++P DF LWK +ST +EP ++SPWG GRPGWH Sbjct: 182 DADENNSEGQHVSLIRKKRDPRDFCLWKYRSRTQNNKSTVIEPASVSFKSPWGFGRPGWH 241 Query: 217 IECSAM-----SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 +ECSAM F +H GG+DL FPHH NEIAQ+ ++ W+H G L Sbjct: 242 VECSAMIQRLAEDFSYTHQFQLHAGGIDLKFPHHSNEIAQAEAYGDWKEWIPHWVHTGHL 301 Query: 272 NLEGRKMSKSNGNFITINELL 292 ++GRKMSKS NF+TI E+L Sbjct: 302 YVKGRKMSKSLKNFVTIREML 322 >gi|260903707|ref|ZP_05912029.1| cysteinyl-tRNA synthetase [Brevibacterium linens BL2] Length = 419 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 183/388 (47%), Gaps = 44/388 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +++T R + D + +YVCG T YD H+G+A + FD+L R+ R + V Sbjct: 21 VFDTGTRSPRRLKGRDQA-AGLYVCGITPYDATHLGHAATYVAFDLLNRVWRDAGLD--V 77 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISI----ITSKNTQQFVKDTTRLACLAPTHQ 122 YV+N TD+DD ++ERA DA + + + F +D + L L P Sbjct: 78 VYVQNTTDVDDPLLERA----------DATGVDWRELAESQIELFREDMSALRVLPPQSY 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIF---DTSSIPNYGSFSR------RKIDEQ 173 + Q++ +++++ AY +N ++ T P +GS S K+ + Sbjct: 128 IGVVESVDQIVKAVEDLVDSRAAYTLDNGDVYYRVSTPINPPFGSVSHDDRATMAKLSAE 187 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFD 232 + G PE K N D +LWK + EP W+ G GRPGWHIEC+ ++ Y G D Sbjct: 188 RGGD--PETPGKDNEIDPLLWKAAREGEPSWDGGKLGPGRPGWHIECTVIADKYAGLPVD 245 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 + GGG DL+FPHHE A + A + A ++H G + +G KMSKS GN + +++L Sbjct: 246 VQGGGSDLVFPHHEMSAAHA-AAWKQTPLARTYMHTGMVGYQGEKMSKSKGNLVLVSKLR 304 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------K 344 E + VIR +L HYR +FT L A L W + + Sbjct: 305 E------QGVDPMVIRTVLLSNHYRSDWNFTEDLLETASARLKAWRHAAMCEAECREGLR 358 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLA 372 G I + +L +DL++ A+ L + A Sbjct: 359 GHIIGLLRESLADDLDSPRALGILDEWA 386 >gi|255716136|ref|XP_002554349.1| KLTH0F03168p [Lachancea thermotolerans] gi|238935732|emb|CAR23912.1| KLTH0F03168p [Lachancea thermotolerans] Length = 773 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 133/242 (54%), Gaps = 20/242 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN------EIIFDTSS 158 ++F KD L L P+ R + ++P+++ ++ II +G+AY + + FD S Sbjct: 247 REFNKDMAALNVLEPSVTTRVSEYVPEIVDFVKRIIDNGYAYATGDGSVYFDTVAFDKSE 306 Query: 159 IPNYGS---FSRRKID----EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +Y +++ K+D + + K++ DF LWK S P EP W+SPWG+G Sbjct: 307 KHDYAKCQPWNKGKLDLINDAEGSLSNFSSTNGKRSSNDFALWKSSKPGEPEWDSPWGKG 366 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+ LG DIH GG+DL FPHH+NEIAQS + N ++H G L Sbjct: 367 RPGWHIECSVMACDVLGPNIDIHTGGIDLAFPHHDNEIAQSEAFYDNHQWVNYFLHTGHL 426 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 ++EG+KMSKS NFITI E L KK+ R +RLA + +DF L E + Sbjct: 427 HIEGQKMSKSLKNFITIGEAL--KKYSARQ-----LRLAFSSAQWNSQLDFKEVLLVEVK 479 Query: 332 IL 333 L Sbjct: 480 SL 481 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 60/85 (70%), Gaps = 2/85 (2%) Query: 4 KIKIYNTLERKITEFQAID-PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++K+YN+L R+ +F I N+ Y CGPTVYD +H+G+AR + D+ R+L+ Y+G Sbjct: 45 RLKLYNSLTRQKEDFVTISGDKNVTWYSCGPTVYDSSHMGHARNYVSIDINRRILQDYFG 104 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + + +V+N+TD+DDKII RARQ H Sbjct: 105 YR-IRFVQNVTDVDDKIILRARQSH 128 >gi|163840786|ref|YP_001625191.1| cysteinyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] gi|310947209|sp|A9WSI9|MSHC_RENSM RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|162954262|gb|ABY23777.1| cysteinyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] Length = 423 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 113/385 (29%), Positives = 183/385 (47%), Gaps = 46/385 (11%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 ++ +YVCG T YD H+G+A + FD+L R+ R V YV+N+TDIDD ++ERA Sbjct: 36 ADASLYVCGITPYDATHMGHAATYLAFDLLGRVWRD--SGASVNYVQNVTDIDDPLLERA 93 Query: 84 RQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL 141 + D + + + F D T L +AP A I ++ ++ +I Sbjct: 94 DR--------DGVDWRELAESQIELFRADMTALNVIAPQQYIGAIEAIQWIVPAVEELIA 145 Query: 142 HGHAYEANN-EIIFDT--SSIPNYGSFSRRKIDEQKMGT-----------------RVPE 181 G AY ++ ++ FDT +S+ S + ++ +G PE Sbjct: 146 EGFAYRMDSGDVYFDTVAASVKTPDSSNAGELGAWWLGQISGLSPEEMLPVFAERGGDPE 205 Query: 182 KYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K+NP D +LW+ EP W + G GRPGWHIEC+ ++ +L F + GGG DL Sbjct: 206 RDGKRNPLDPLLWRVERAGEPAWPGASLGDGRPGWHIECTVIARKFLPAPFSVQGGGSDL 265 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHE + D A + H G + L+G KMSKS GN + ++ L Sbjct: 266 LFPHHEMGDGHAWALDHT-PLAKHYAHAGMVGLDGEKMSKSRGNLVLVSALRAEGV---- 320 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-----SAL 355 +RL++L HYR +T + L +++ L++W + A L +AL Sbjct: 321 --DPMAVRLSILANHYRSDWSWTAELLERSKLRLAQWRAAMEHTSVGSAAQLVSEIRTAL 378 Query: 356 YNDLNTVSAIQALHK-LARESTKNH 379 DL+ +A+ A+ + +++T H Sbjct: 379 AADLDAPTALNAVDNWVGQKATTEH 403 >gi|154285550|ref|XP_001543570.1| hypothetical protein HCAG_00616 [Ajellomyces capsulatus NAm1] gi|150407211|gb|EDN02752.1| hypothetical protein HCAG_00616 [Ajellomyces capsulatus NAm1] Length = 665 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 145/269 (53%), Gaps = 26/269 (9%) Query: 74 DIDDKIIERARQEHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 D+ D ++E H S + +I +T K +F++D L L P R T ++P Sbjct: 188 DVQDVLLEYLDSIHGSSIRGEDRTIFTKLTKKYEDRFMQDVRDLNVLDPDTVTRVTEYMP 247 Query: 131 QMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVP 180 +++ ++ I+ H Y ++ + FD + G S++R K+ + G Sbjct: 248 EIVSFVERIVKHRFGYVTSDGSVYFDIGAFEAAGNSYARLEPWNRHDTKLHAEGEGALTK 307 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ ADF LWK S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL Sbjct: 308 KTMEKRSAADFALWKASKAGEPSWPSPWGDGRPGWHIECSAMASAKLGKQMDIHSGGIDL 367 Query: 241 IFPHHENEIAQS------CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 FPHH+NE+AQS CA + N ++H G L+++G KMSKS NF TI E L+ Sbjct: 368 AFPHHDNELAQSEAYWHETCAH--DHWVNYFLHMGHLSIQGSKMSKSLKNFTTIREALDK 425 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + RS +R+ L++ +++ I+ T Sbjct: 426 GDWTPRS-----LRIVFLLSAWKDGIEIT 449 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 5 IKIYNTLERKITEFQAIDP--SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R F +DP + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 26 LKIYNSLTRSKVPFVPLDPIGRKVTWYACGPTVYDDAHLGHARNYVTNDILRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERA 83 + V ++ NITD+DDKI+ A Sbjct: 85 KFDVEFIMNITDVDDKIVRSA 105 >gi|303319833|ref|XP_003069916.1| cysteinyl-tRNA synthetase family protein [Coccidioides posadasii C735 delta SOWgp] gi|240109602|gb|EER27771.1| cysteinyl-tRNA synthetase family protein [Coccidioides posadasii C735 delta SOWgp] Length = 839 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 131/242 (54%), Gaps = 25/242 (10%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTS 157 ++ + +F++D L L R T IP+++ ++ I+ HG AY A+ + FD + Sbjct: 277 LSQRFEDRFMEDARALNILDADEVTRVTEFIPEIVSFVEQIVQHGFAYATADGSVYFDIA 336 Query: 158 SIPNYGSFSRR---------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ R + G + + K++ ADF LWK S EP W SPW Sbjct: 337 AFEAAGNQYARLEPWNRNDTALQADGEGALINKTVEKRSKADFALWKASKAGEPSWPSPW 396 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-------CCADRIEKT 261 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS C D+ Sbjct: 397 GLGRPGWHIECSAMASARLGKQMDIHSGGIDLAFPHHDNELAQSEAYWHKGCSHDQW--- 453 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N ++H G L+++G KMSKS NF TI E LE + RS +R+ LM ++ + I+ Sbjct: 454 VNYFLHMGHLSIQGSKMSKSLKNFTTIREALERGDWTPRS-----LRIVFLMGNWADGIE 508 Query: 322 FT 323 T Sbjct: 509 IT 510 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 15/150 (10%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R F +DP+ + Y CGPTVYD AH+G+AR + D+L RLLR Y+ Sbjct: 60 LKLWNSLTRSKVPFVPLDPTGNKVTWYACGPTVYDDAHLGHARNYVSTDILRRLLRDYF- 118 Query: 63 EKCVTYVRNITDIDDKIIERARQEH------PSIP-INDAISIITSKNTQQFVKDTTRLA 115 + V ++ NITD+DDKII RARQ+H S P I+D++ + + +V+ L Sbjct: 119 KFDVKFIMNITDVDDKIITRARQQHLFMEYVTSHPTIDDSVVETITSAYESYVRKNLPLL 178 Query: 116 CLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 PT P+A P+ + + +L+G A Sbjct: 179 EHVPT--PKA---FPEAVEIKYGFVLNGGA 203 >gi|71014778|ref|XP_758760.1| hypothetical protein UM02613.1 [Ustilago maydis 521] gi|46098550|gb|EAK83783.1| hypothetical protein UM02613.1 [Ustilago maydis 521] Length = 824 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 130/248 (52%), Gaps = 31/248 (12%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-----EANNEIIFDTSSIP 160 ++ D RL PT R + ++P+++ +Q II G AY + + FDT + Sbjct: 276 EYFNDMKRLHVEPPTTLTRVSEYVPEIVTFVQQIIDRGFAYAEGVDQNKKNVWFDTRAFD 335 Query: 161 NY----GSF------------SRRKIDEQKMG---TRVPEKYHKKNPADFILWKRSTPME 201 GSF R++ E+ G T K+ +DF LWK S P E Sbjct: 336 GAKSQDGSFQHSYAKLQPWSKGNRELLEEGEGSLSTSTAATAGKRAASDFALWKSSKPGE 395 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 P W SPWG GRPGWHIECS M S LG+ DIH GG+DL+FPHH+NEIAQS + Sbjct: 396 PAWPSPWGPGRPGWHIECSVMGSAVLGETMDIHSGGVDLMFPHHDNEIAQSEAHHGCRQW 455 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N ++H G L++EG KMSKS NFI+I+E LE +F R +R++ L+ + +D Sbjct: 456 VNYFLHTGHLHIEGLKMSKSLKNFISIDEALE--RFTARQ-----LRMSFLLQPWHGRMD 508 Query: 322 FTVQRLTE 329 F L E Sbjct: 509 FKQSALGE 516 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YN+L R T F + Y CGPTVYD +H+G+AR + D++ R+LR Y G Sbjct: 39 ELKMYNSLTRTKTPFVPKKGRTVTWYNCGPTVYDASHMGHARNYVTQDIIRRILRDYLGY 98 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V NITD+DDKII +AR + Sbjct: 99 D-VHFVMNITDVDDKIIIKARHSY 121 >gi|119183429|ref|XP_001242754.1| hypothetical protein CIMG_06650 [Coccidioides immitis RS] Length = 809 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 131/242 (54%), Gaps = 25/242 (10%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTS 157 ++ + +F++D L L R T IP+++ ++ I+ HG AY A+ + FD + Sbjct: 247 LSQRFEDRFMEDARALNILDADEVTRVTEFIPEIVSFVEQIVQHGFAYATADGSVYFDIA 306 Query: 158 SIPNYGSFSRR---------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ R + G + + K++ ADF LWK S EP W SPW Sbjct: 307 AFEAAGNQYARLEPWNRNDTALQADGEGALINKAVEKRSKADFALWKASKAGEPSWPSPW 366 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-------CCADRIEKT 261 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS C D+ Sbjct: 367 GPGRPGWHIECSAMASARLGKQMDIHSGGIDLAFPHHDNELAQSEAYWHKGCSHDQW--- 423 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N ++H G L+++G KMSKS NF TI E LE + RS +R+ LM ++ + I+ Sbjct: 424 VNYFLHMGHLSIQGSKMSKSLKNFTTIREALERGDWTPRS-----LRIVFLMGNWADGIE 478 Query: 322 FT 323 T Sbjct: 479 IT 480 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R F +DP+ + Y CGPTVYD AH+G+AR I+ + L Sbjct: 60 LKLWNSLTRSKVPFVPLDPTGNKVTWYACGPTVYDDAHLGHARNYIITRARQQHL----- 114 Query: 63 EKCVTYVRNITDIDDKIIE 81 + YV + IDD ++E Sbjct: 115 --FMEYVTSHPTIDDSVVE 131 >gi|293363664|ref|ZP_06610414.1| putative cysteinyl-tRNA synthetase [Mycoplasma alligatoris A21JP2] gi|292552771|gb|EFF41531.1| putative cysteinyl-tRNA synthetase [Mycoplasma alligatoris A21JP2] Length = 403 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 167/338 (49%), Gaps = 26/338 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 YVCGPTVY HIGN RP+ D+ + R +V NITDIDDKII +A + Sbjct: 1 YVCGPTVYSDLHIGNIRPITTIDLFLKANRNL--NIPFIFVHNITDIDDKIINKAIELKV 58 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-E 147 D + I ++K +Q+ + L TH ++ + IQ ++ + AY + Sbjct: 59 -----DELEI-STKYAKQYKELLNALKIDTITHLVYVRKNMDLITDYIQELLNNKSAYFD 112 Query: 148 ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 N ++FD N YG S++KID+ +K H P+DF LWK +T + + S Sbjct: 113 LNKNVLFDVKKYENNYGIVSKQKIDKMIFENENVQKNH---PSDFALWK-NTNIGVKFNS 168 Query: 207 PWGRGRPGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 +G GRPGWH ECSA+ Y G+ DIH GG+DL FPHHENE Q + T W Sbjct: 169 SFGPGRPGWHTECSALIKKYFNGESLDIHSGGIDLKFPHHENENIQHFALYNRQITKK-W 227 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G +N G+KMSKS GN + + LE + V R+ L++ P++ + Sbjct: 228 LHCGHINFAGQKMSKSLGNVVLAKDFLE-------QYGPNVFRMIQLLSDITSPMNLDEE 280 Query: 326 RLTEAEILLSKWPQTSTSKGIID---PAVLSALYNDLN 360 + A+ SK Q S + D + LY +LN Sbjct: 281 FIKNAQKAFSKIKQLSFKLFLQDNLSNEINQELYKELN 318 >gi|21104458|dbj|BAB93499.1| OK/SW-CL.10 [Homo sapiens] Length = 453 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/260 (38%), Positives = 138/260 (53%), Gaps = 21/260 (8%) Query: 69 VRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 V ITD+DDKII+RA + +N + + + S + F +D L L PT R T + Sbjct: 2 VMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYLRVTEN 55 Query: 129 IPQMIYLIQNIILH-GHAYEANNEIIFDTSSIPN--YGSFSRRKIDEQKMGTRVPEKYHK 185 IPQ+I I+ II + + + + S+ YG RR + + H Sbjct: 56 IPQIISFIEGIIASWERLFNGKRQCLLRSESLEETKYGKIGRRGPWSSPETSGLLTSRHA 115 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 DF LWK + P E W SPWG GRPGWHIECSA++S G DIH GG+DL FPHH Sbjct: 116 N---DFALWKAAKPQEVFWASPWGPGRPGWHIECSAIASMVFGSQLDIHSGGIDLAFPHH 172 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSWP 303 ENEIAQ + E+ N ++H+G L+ +G+ KMSKS N+ITI + L+T + Sbjct: 173 ENEIAQCEVFHQCEQWGNYFLHSGHLHAKGKEEKMSKSLKNYITIKDFLKT-------FS 225 Query: 304 APVIRLAMLMTHYREPIDFT 323 V R L + YR ID++ Sbjct: 226 PDVFRFFCLRSSYRSAIDYS 245 >gi|302309006|ref|NP_986187.2| AFR640Wp [Ashbya gossypii ATCC 10895] gi|299790899|gb|AAS54011.2| AFR640Wp [Ashbya gossypii ATCC 10895] Length = 750 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 16/238 (6%) Query: 94 DAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEI 152 D + + F D RL P+ R + ++ +++ I+ I+ +G+AY ++ + Sbjct: 225 DVFRALAAHWENSFNADMERLGVRPPSVTTRVSEYVDEIVKFIERIVANGYAYATSDGSV 284 Query: 153 IFDT-------SSIPNYGSFSRRKIDEQKMGT-RVPEKYHKKNPADFILWKRSTPMEPGW 204 FDT + P ++R D G + K+NP DF LWK S EP W Sbjct: 285 YFDTVQFEAGGHAYPKCQPWNRGVADLIADGEGALATGTEKQNPNDFALWKASKAGEPEW 344 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 SPWG GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQ+ ++ N Sbjct: 345 PSPWGLGRPGWHIECSVMASDVLGERVDIHSGGIDLAFPHHDNELAQAEACFNSQQWVNY 404 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 ++H G L++EG+KMSKS NFITI+E L K + R +RLA M+ + P+DF Sbjct: 405 FLHTGHLHIEGQKMSKSLKNFITIDEAL--KMYSARQ-----LRLAFAMSPWGSPLDF 455 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + N+ Y CGPTVYD +H+G+AR + D+ RL+ Y+G Sbjct: 36 LKLYNSLTRTKDEFIPLSQGRNVTWYSCGPTVYDASHMGHARNYVSIDINRRLIEDYFGY 95 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQEH Sbjct: 96 H-VEFVQNVTDIDDKIILRARQEH 118 >gi|320034216|gb|EFW16161.1| cysteinyl-tRNA synthetase [Coccidioides posadasii str. Silveira] Length = 805 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 136/255 (53%), Gaps = 27/255 (10%) Query: 88 PSIPIND--AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 PSI D + ++ + +F++D L L R T IP+++ ++ I+ HG A Sbjct: 230 PSIRGEDYSIFTQLSQRFEDRFMEDARVLNILDADEVTRVTEFIPEIVSFVEQIVQHGFA 289 Query: 146 YE-ANNEIIFDTSSIPNYGSFSRR---------KIDEQKMGTRVPEKYHKKNPADFILWK 195 Y A+ + FD ++ G+ R + G + + K++ ADF LWK Sbjct: 290 YATADGSVYFDIAAFEAAGNQYARLEPWNRNDTALQADGEGALINKTVEKRSKADFALWK 349 Query: 196 RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS--- 252 S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS Sbjct: 350 ASKAGEPSWPSPWGLGRPGWHIECSAMASARLGKQMDIHSGGIDLAFPHHDNELAQSEAY 409 Query: 253 ----CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 C D+ N ++H G L+++G KMSKS NF TI E LE + RS +R Sbjct: 410 WHKGCSHDQW---VNYFLHMGHLSIQGSKMSKSLKNFTTIREALERGDWTPRS-----LR 461 Query: 309 LAMLMTHYREPIDFT 323 + LM ++ + I+ T Sbjct: 462 IVFLMGNWADGIEIT 476 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 15/150 (10%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R F +DP+ + Y CGPTVYD AH+G+AR + D+L RLLR Y+ Sbjct: 26 LKLWNSLTRSKVPFVPLDPTGNKVTWYACGPTVYDDAHLGHARNYVSTDILRRLLRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH------PSIP-INDAISIITSKNTQQFVKDTTRLA 115 + V ++ NITD+DDKII RARQ+H S P I+D++ + + +V+ L Sbjct: 85 KFDVKFIMNITDVDDKIITRARQQHLFMEYVTSHPTIDDSVVETITSAYESYVRKNLPLL 144 Query: 116 CLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 PT P+A P+ + + +L+G A Sbjct: 145 EHVPT--PKA---FPEAVEIKYGFVLNGGA 169 >gi|307178002|gb|EFN66863.1| Cysteinyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] Length = 738 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 126/231 (54%), Gaps = 20/231 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS------- 158 +F KD L L P R + +IP++I +Q +I +G AYE+N + FD Sbjct: 212 EFHKDMDALNVLRPNVLTRVSEYIPEIIAFVQKVIDNGFAYESNGSVYFDVGKFDKQEKH 271 Query: 159 -----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 +P YG S + E + K++ DF LWK S EP W+SPWG+GR Sbjct: 272 SYAKLVPEAYGDTSSLQEGEGDLSVTEDRLSEKRSVTDFALWKSSKTGEPWWDSPWGKGR 331 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S G+ DIH GG+DL FPHH+NEIAQ+ ++H+G L Sbjct: 332 PGWHIECSVMASAICGESLDIHTGGVDLKFPHHDNEIAQAEAYFDNSNWVKYFLHSGHLT 391 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 + G KMSKS NF+TI + L KK+ R +RLA L+ +++ +D++ Sbjct: 392 IAGCKMSKSLKNFVTIQDAL--KKYSSRQ-----LRLAFLLHSWKDTLDYS 435 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R+ F + + Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 LRLYNSLTREKEVFVPQFGNRVLWYCCGPTVYDASHMGHARSYISFDILRRILSDYFGYD 79 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ + Sbjct: 80 -VLYVMNITDIDDKIIKRARQNY 101 >gi|261328614|emb|CBH11592.1| cysteinyl-tRNA synthetase, putative [Trypanosoma brucei gambiense DAL972] Length = 785 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 154/312 (49%), Gaps = 46/312 (14%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------- 159 F +D RL P R T ++PQ++ IQ I+ +G AY + FDT++ Sbjct: 245 FFEDMKRLGVKDPDVITRVTEYVPQVVNFIQRIMDNGFAYSGETSVFFDTTAFIRAGHNY 304 Query: 160 PNYGSFSRR--------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 P S R ++ E + K++P DF LWK S P EP W SPWG G Sbjct: 305 PKLKPISERDECNTTEAEMAEGEGALAACVAGEKRSPNDFALWKFSKPGEPHWPSPWGAG 364 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG DIH GG DL FPHH+NE AQS + N ++H G L Sbjct: 365 RPGWHIECSVMASDILGTNMDIHSGGCDLKFPHHDNECAQSEAYSMQHQWVNYFLHCGHL 424 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +++G KMSKS NFITI L+ R+ +RL L + + ++F+ Q + EA+ Sbjct: 425 HIKGLKMSKSLKNFITIRHALDDLGVTPRT-----MRLLFLANQWNKAMNFSDQSIDEAK 479 Query: 332 ----ILLSKWP------QTSTSKGI----------------IDPAVLSALYNDLNTVSAI 365 +L S + ++ T K I + AV +AL N+ +T +A+ Sbjct: 480 ERERVLRSFFGSVDMVLRSDTLKEIQGFNEHDRKLNEAWISTESAVDAALRNNFDTPTAM 539 Query: 366 QALHKLARESTK 377 +A+ L E+ + Sbjct: 540 EAIMGLVSETNR 551 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N++ + +F + +R Y CGPTVYD +H+G+AR + FD+L R++ ++G K Sbjct: 38 VCVLNSMTECLEKFAPREGRLVRWYTCGPTVYDVSHMGHARAYLTFDILRRIMEDFFGYK 97 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 98 -VIYQMNITDIDDKIIKRAR 116 >gi|72389845|ref|XP_845217.1| cysteinyl-tRNA synthetase [Trypanosoma brucei TREU927] gi|62359925|gb|AAX80350.1| cysteinyl-tRNA synthetase, putative [Trypanosoma brucei] gi|70801752|gb|AAZ11658.1| cysteinyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 785 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 154/312 (49%), Gaps = 46/312 (14%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------- 159 F +D RL P R T ++PQ++ IQ I+ +G AY + FDT++ Sbjct: 245 FFEDMKRLGVKDPDVITRVTEYVPQVVNFIQRIMDNGFAYSGETSVFFDTTAFIRAGHNY 304 Query: 160 PNYGSFSRR--------KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 P S R ++ E + K++P DF LWK S P EP W SPWG G Sbjct: 305 PKLKPISERDECNTTEAEMAEGEGALAACVAGEKRSPNDFALWKFSKPGEPHWPSPWGAG 364 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG DIH GG DL FPHH+NE AQS + N ++H G L Sbjct: 365 RPGWHIECSVMASDILGTNMDIHSGGCDLKFPHHDNECAQSEAYSMQHQWVNYFLHCGHL 424 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 +++G KMSKS NFITI L+ R+ +RL L + + ++F+ Q + EA+ Sbjct: 425 HIKGLKMSKSLKNFITIRHALDDLGVTPRT-----MRLLFLANQWNKAMNFSDQSIDEAK 479 Query: 332 ----ILLSKWP------QTSTSKGI----------------IDPAVLSALYNDLNTVSAI 365 +L S + ++ T K I + AV +AL N+ +T +A+ Sbjct: 480 ERERVLRSFFGSVDMVLRSDTLKEIQGFNEHDRKLNEAWISTESAVDAALRNNFDTPTAM 539 Query: 366 QALHKLARESTK 377 +A+ L E+ + Sbjct: 540 EAIMGLVSETNR 551 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + + N++ + +F + +R Y CGPTVYD +H+G+AR + FD+L R++ ++G K Sbjct: 38 VCVLNSMTECLEKFAPREGRLVRWYTCGPTVYDVSHMGHARAYLTFDILRRIMEDFFGYK 97 Query: 65 CVTYVRNITDIDDKIIERAR 84 V Y NITDIDDKII+RAR Sbjct: 98 -VIYQMNITDIDDKIIKRAR 116 >gi|50291223|ref|XP_448044.1| hypothetical protein [Candida glabrata CBS 138] gi|49527355|emb|CAG60995.1| unnamed protein product [Candida glabrata] Length = 788 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 19/230 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII------FDTSS 158 +Q+ D L + P R + ++P+++ +++II +G+AY N+ + FD + Sbjct: 251 KQYDSDMAALNVIPPNVTTRVSEYVPEIVSFVEDIINNGYAYATNDGSVYFDTVRFDQNE 310 Query: 159 IPNYGS---FSRRKIDEQKMGTRVPEKYH---KKNPADFILWKRSTPMEPGWESPWGRGR 212 +Y +++ K+D G + KK+ DF LWK S P EP W+SPWG+GR Sbjct: 311 KHDYAKCQPWNKGKLDLINDGEGSLSNFDNNGKKSANDFALWKGSKPGEPAWDSPWGKGR 370 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ N ++H G L+ Sbjct: 371 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEAKFDNKQWINYFLHTGHLH 430 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +EG+KMSKS NFITI E L+ K+ R +RLA + +DF Sbjct: 431 IEGQKMSKSLKNFITIQEALQ--KYTPRQ-----LRLAFASVPWNNQLDF 473 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 12/110 (10%) Query: 5 IKIYNTLERKITEFQ-AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R F + + Y CGPTVYD +H+G+AR + D+ RL++ Y+G Sbjct: 39 LKLYNSLTRSKEVFAPSSGTKTVSWYSCGPTVYDASHMGHARNYVSIDINRRLIQNYFGY 98 Query: 64 KCVTYVRNITDIDDKIIERAR----------QEHPSIPINDAISIITSKN 103 + +V+N+TDIDDKII RAR Q P+N++ I+ N Sbjct: 99 D-IQFVQNVTDIDDKIIIRARHNYLFEEFVKQNDSETPLNESDEIVKKAN 147 >gi|255728717|ref|XP_002549284.1| cysteinyl-tRNA synthetase [Candida tropicalis MYA-3404] gi|240133600|gb|EER33156.1| cysteinyl-tRNA synthetase [Candida tropicalis MYA-3404] Length = 786 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 129/231 (55%), Gaps = 24/231 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIP--- 160 +++ +D RL L P+ R + ++P +I + II +G+AY + + FDT Sbjct: 257 KRYNEDMARLNVLPPSITTRVSEYVPDIIEFVDKIIENGYAYATEDGSVYFDTVKYEHSK 316 Query: 161 ---------NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 + G S E + T K++ ADF LWK S P EP W+S WG+G Sbjct: 317 HEYAKLQPWSKGDLSLINDGEGSLSTGNT----KRSSADFALWKASKPGEPSWDSKWGKG 372 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S G+ DIH GG+DL FPHH+NE+AQS ++ N ++HNG L Sbjct: 373 RPGWHIECSVMASDIGGETLDIHSGGIDLCFPHHDNELAQSEAYFDNKQWINYFMHNGHL 432 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +++G+KMSKS NFITI+E L K F R +RL + + +P+DF Sbjct: 433 HIQGQKMSKSLKNFITIDEAL--KDFSARQ-----LRLVFALNPWEKPLDF 476 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +K+YN+L R EF I P I Y CGPTVYD +H+G+AR + D+ R+L+ Y+ Sbjct: 47 KPTLKLYNSLTRSKNEFHPIKPGQITWYSCGPTVYDHSHMGHARNYVSTDISRRILQDYF 106 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + +++N+TDIDDKII ARQ++ Sbjct: 107 GYH-INFIQNVTDIDDKIIIAARQQY 131 >gi|315124323|ref|YP_004066327.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018045|gb|ADT66138.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 240 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 13/223 (5%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 +D +I +Y+CGPTVYD AH+G+AR + FD+L R+L G + V + RN TDIDDKI+ Sbjct: 14 LDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVL-LAQGNR-VKFARNYTDIDDKIL 71 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 ++ Q ++ IT + + +D L L P +PRAT++I M+ LI+ + Sbjct: 72 KKMAQSGQTL------EEITEFYIKSYEEDMRVLNVLDPDFKPRATHYITAMLDLIKKLA 125 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPM 200 G Y + I FDTS Y S S R ++E +R+ + K+N +DF+LWK Sbjct: 126 KDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENI--SRLSNEVQKRNESDFVLWKFD--- 180 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 E +ES +G+GRPGWH EC AM DIH GG+DL+FP Sbjct: 181 ENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFP 223 >gi|170584986|ref|XP_001897270.1| cysteinyl tRNA synthetase protein 1, isoform b [Brugia malayi] gi|158595316|gb|EDP33879.1| cysteinyl tRNA synthetase protein 1, isoform b, putative [Brugia malayi] Length = 768 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 130/248 (52%), Gaps = 23/248 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 + K +F+ D L L PT R + +IP++I ++ II +G+ Y + + FDT Sbjct: 223 LAKKYENEFLCDMASLNVLPPTVLTRVSEYIPEIIAYVEKIINNGYGYVTKDGSVYFDTV 282 Query: 158 SIPNYGSFSRRKI------DEQKMGTRVPEKY---------HKKNPADFILWKRSTPMEP 202 N S K+ D +++ + E +K+N DF LWK S EP Sbjct: 283 KFDNSEKHSYCKLVPEAFADNEQLMKNMRESEGDLSMGNLENKRNVTDFALWKASKDGEP 342 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W SPWG+GRPGWHIECSAMSS G DIH GG DL FPHH+NEIAQ IE Sbjct: 343 YWNSPWGKGRPGWHIECSAMSSKICGTSLDIHAGGFDLKFPHHDNEIAQVEAYYDIENWV 402 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N ++H G L + G KMSKS NFITI E L + + A +R+ LM ++ + +D+ Sbjct: 403 NYFLHCGSLRIAGLKMSKSLKNFITIREAL-------KHYSARQLRILFLMHNWNDVLDY 455 Query: 323 TVQRLTEA 330 + + A Sbjct: 456 SAASMERA 463 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 41/79 (51%), Positives = 58/79 (73%), Gaps = 1/79 (1%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ RK F ++P ++ Y+CGPTVYD +HIG+AR + FD+L R+L+ Y+G + Sbjct: 37 LYNSFTRKKELFVPLNPKQVKWYICGPTVYDSSHIGHARAYLSFDILRRVLQDYFGYD-I 95 Query: 67 TYVRNITDIDDKIIERARQ 85 Y+ NITDIDDKII+RARQ Sbjct: 96 QYIMNITDIDDKIIKRARQ 114 >gi|259482994|tpe|CBF77996.1| TPA: cysteinyl-tRNA synthetase (AFU_orthologue; AFUA_5G09610) [Aspergillus nidulans FGSC A4] Length = 833 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 17/237 (7%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T K ++F+KD L L P R T + ++ ++ I+ + Y A+ + FD + Sbjct: 277 LTRKYEERFMKDMDDLNVLRPDELTRVTEYGQEIADFVEKIVENKFGYVSADGSVYFDIN 336 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G S S K+ + G+ + K++ +DF LWK S P EP W S W Sbjct: 337 AFEAAGFPYARLEPWSRSDNKLLAEGEGSLANKTTEKRSKSDFALWKSSKPGEPSWSSSW 396 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA--DRIEKTANIWI 266 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N ++ Sbjct: 397 GRGRPGWHIECSAMASARLGKHMDIHSGGIDLAFPHHDNELAQSEAYWHSHGDQWVNYFL 456 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +++ I+ T Sbjct: 457 HMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWKDGIEIT 508 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDP--SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YN+L + T F IDP + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 57 LKVYNSLTKSKTPFIPIDPHGKKVTWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 115 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V +V NITD+DDKII RARQ+H Sbjct: 116 KFNVHFVMNITDVDDKIILRARQQH 140 >gi|67903626|ref|XP_682069.1| hypothetical protein AN8800.2 [Aspergillus nidulans FGSC A4] gi|40741403|gb|EAA60593.1| hypothetical protein AN8800.2 [Aspergillus nidulans FGSC A4] Length = 838 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 17/237 (7%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T K ++F+KD L L P R T + ++ ++ I+ + Y A+ + FD + Sbjct: 282 LTRKYEERFMKDMDDLNVLRPDELTRVTEYGQEIADFVEKIVENKFGYVSADGSVYFDIN 341 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G S S K+ + G+ + K++ +DF LWK S P EP W S W Sbjct: 342 AFEAAGFPYARLEPWSRSDNKLLAEGEGSLANKTTEKRSKSDFALWKSSKPGEPSWSSSW 401 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA--DRIEKTANIWI 266 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS ++ N ++ Sbjct: 402 GRGRPGWHIECSAMASARLGKHMDIHSGGIDLAFPHHDNELAQSEAYWHSHGDQWVNYFL 461 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +++ I+ T Sbjct: 462 HMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWKDGIEIT 513 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 8/90 (8%) Query: 5 IKIYNTLERKITEFQAIDP--SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YN+L + T F IDP + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 57 LKVYNSLTKSKTPFIPIDPHGKKVTWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 115 Query: 63 EKCVTYVRNITDIDDK-----IIERARQEH 87 + V +V NITD+DDK II RARQ+H Sbjct: 116 KFNVHFVMNITDVDDKVNGVQIILRARQQH 145 >gi|149057587|gb|EDM08830.1| rCG43187, isoform CRA_d [Rattus norvegicus] Length = 241 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 +ITD+DDKII+RA + +N + + + S ++F +D L L PT R T +IP Sbjct: 4 SITDVDDKIIKRANE------MNVSPASLASLFEEEFKQDMAALKVLPPTVYLRVTENIP 57 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNP 188 Q+I IQ II HGHAY A + FD + + YG + ++ T P K++ Sbjct: 58 QIISFIQGIIAHGHAYATATGSVYFDLRARGDKYG----KLVNTVPSATAEPVDSDKRHS 113 Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 +DF LWK + P E W SPWG GRPGWHIECSAM+S G DIH GG+DL FPHHENE Sbjct: 114 SDFALWKGAKPQEVFWASPWGDGRPGWHIECSAMASEVFGSQLDIHTGGIDLAFPHHENE 173 Query: 249 IAQSCCADRIEKTANIWIHNG 269 IAQS + ++ N ++H+G Sbjct: 174 IAQSEVFHQCQQWGNYFLHSG 194 >gi|296817003|ref|XP_002848838.1| cysteinyl-tRNA synthetase [Arthroderma otae CBS 113480] gi|238839291|gb|EEQ28953.1| cysteinyl-tRNA synthetase [Arthroderma otae CBS 113480] Length = 804 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 134/244 (54%), Gaps = 23/244 (9%) Query: 96 ISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIF 154 +++T + +F++D L L P R T +P+++ ++ II H Y + + F Sbjct: 240 FTLLTKEYEDRFMQDVRDLNVLDPDEITRVTEFMPEIVSFVERIIEHKFGYVTPDGSVYF 299 Query: 155 DTSSIPNYG-SFSRRK--------IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 D S G S++R + + + G ++ KK+ ADF LWK S EP W Sbjct: 300 DIESFEAAGNSYARLEPWNRNDANLQSEGEGALSNKQAEKKSAADFALWKASKAGEPSWP 359 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS------CCADRIE 259 SPWG GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQS C+ Sbjct: 360 SPWGNGRPGWHIECSAMASARLGKQMDIHSGGIDLAFPHHDNEIAQSEAYWSPTCSHV-- 417 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 + N +IH G L+++G KMSKS NF TI + L+ + RS +R+ L+ +R+ Sbjct: 418 QWVNYFIHMGHLSIQGSKMSKSLKNFTTIRDALQRGDWTPRS-----LRIVFLLGGWRDG 472 Query: 320 IDFT 323 I+ T Sbjct: 473 IEIT 476 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 26 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V Y+ NITD+DDKII R RQ+H Sbjct: 85 KFDVNYIMNITDVDDKIITRGRQQH 109 >gi|168008202|ref|XP_001756796.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692034|gb|EDQ78393.1| predicted protein [Physcomitrella patens subsp. patens] Length = 811 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 131/239 (54%), Gaps = 16/239 (6%) Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159 T K +F D T L C P R T ++ ++I ++ ++ + AY AN + FDT + Sbjct: 222 TLKYENEFWDDMTALGCGYPDVLVRVTEYMDKIIEYVEVVLANKFAYVANGSVYFDTKAF 281 Query: 160 PNYGSFSRRKIDEQKMGTRVP--------EKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 G K++ +G+ + E K+ DF LWK+S P EP WESPWG G Sbjct: 282 REAG-HQYGKLNPAAVGSSLLASESESNFETSEKRTSCDFALWKKSKPGEPAWESPWGLG 340 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECSAM+S LG DIH GG DL FPHH+NE+AQS + + H+G L Sbjct: 341 RPGWHIECSAMASDILGDNMDIHSGGHDLQFPHHDNELAQSEAYFHCHEWVRYFFHSGHL 400 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 +++G KMSKS NFITI E L TK + A +R+ ++ + + I+F+ + EA Sbjct: 401 SIDGLKMSKSLKNFITIKEAL-TK------YTARQLRMLFVIQSWDKSINFSTTVVNEA 452 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 9/122 (7%) Query: 2 KKKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 K+ + + N+L ++ F D S N+ Y+CGPTVYD +H+G+AR + FD++ R+L Y Sbjct: 13 KRGLMVNNSLCKEKVPFFTKDGSRNVTWYICGPTVYDSSHVGHARNYVTFDIIRRILEDY 72 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEH-------PSIPINDAISIITSKNTQQFVKDTTR 113 + V YV N+TD+DDKII RAR+ + +I +N I + ++ VK + Sbjct: 73 F-HYNVKYVMNVTDVDDKIINRARRNYLMDQYRSGAIDLNKVIEDLERAMEEELVKQQKK 131 Query: 114 LA 115 ++ Sbjct: 132 IS 133 >gi|328849314|gb|EGF98497.1| hypothetical protein MELLADRAFT_46041 [Melampsora larici-populina 98AG31] Length = 791 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 132/249 (53%), Gaps = 24/249 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 + +K F +D L PT R +++IPQ+ I I+ +G+AYE+N I FD + Sbjct: 237 LATKWEHSFFEDMKSLNVEPPTVLTRVSDYIPQIESFISQIMENGYAYESNGSIYFDVLA 296 Query: 159 IPN------------YGSFS-----RRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPME 201 + Y S K+ ++ G K++ ADF LWKRS E Sbjct: 297 FDHSTLRSDPSLHHTYAKLSPSSKTNLKLIKEGEGGLSSLMDSKRSTADFALWKRSKAGE 356 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT 261 P WES WG+GRPGWHIECS M+S LG DIH GG+DL+FPHH+NE+AQS + Sbjct: 357 PEWESRWGKGRPGWHIECSVMASEVLGNGMDIHSGGVDLMFPHHDNELAQSEAYHDCHQW 416 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N ++H G L++EG KMSKS NFITI + L K+ R +R++ + + +D Sbjct: 417 VNYFLHTGHLHIEGLKMSKSLKNFITIQDAL--KRHSARQ-----LRISFIGQRWDLGMD 469 Query: 322 FTVQRLTEA 330 F ++E Sbjct: 470 FAESSMSEV 478 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+YN+L + T+F P I Y CGPTVYD +H+G+AR + D+L R+ R Y+ Sbjct: 13 KGLKLYNSLTKSKTDFIPRIPGKISWYNCGPTVYDASHMGHARNYVAQDILRRITRDYFK 72 Query: 63 EKCVTYVRNITDIDDKIIERARQE 86 + + +V NITDIDDKII+RAR+E Sbjct: 73 YE-INFVMNITDIDDKIIKRAREE 95 >gi|315049511|ref|XP_003174130.1| cysteinyl-tRNA synthetase [Arthroderma gypseum CBS 118893] gi|311342097|gb|EFR01300.1| cysteinyl-tRNA synthetase [Arthroderma gypseum CBS 118893] Length = 804 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/326 (34%), Positives = 162/326 (49%), Gaps = 55/326 (16%) Query: 89 SIPIND--AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 SIP +D + +T + +F+KD L L P R T +P+++ ++ II H Y Sbjct: 231 SIPGSDHSIFTRLTREYEDRFMKDVRDLNVLDPDEITRVTEFMPEIVSFVERIIDHKFGY 290 Query: 147 -EANNEIIFDTSSIPNYGSFSRR---------KIDEQKMGTRVPEKYHKKNPADFILWKR 196 + + FD S G+ R + + G+ ++ KK+ ADF LWK Sbjct: 291 VTPDGSVYFDIESFEAAGNNYARLEPWNRNDANLQSEGEGSLSNKQAEKKSSADFALWKA 350 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS---- 252 S EP W SPWG GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQS Sbjct: 351 SKAGEPSWPSPWGNGRPGWHIECSAMASSRLGKQMDIHSGGIDLAFPHHDNEIAQSEAYW 410 Query: 253 --CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 C+ + N +IH G L+++G KMSKS NF TI + L+ + RS +R+ Sbjct: 411 SPTCSHV--QWVNYFIHMGHLSIQGSKMSKSLKNFTTIRDALQRGDWTPRS-----LRIV 463 Query: 311 MLMTHYREPIDFTVQ-----------------RLTEAEILLSKWPQTSTSKGIIDPAVLS 353 L+ +R+ I+ T + R+ + + L P+T+ + + PA L Sbjct: 464 FLLGGWRDGIEITEEIVKAGNAWEEKVNNFFIRVKDPSVKL---PETTQDEEL--PAALK 518 Query: 354 A--------LYNDLNTVSAIQALHKL 371 A L + NT A+ A+ +L Sbjct: 519 AAQDNVHKHLCDSFNTAGAMYAISEL 544 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 26 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + + Y+ NITD+DDKII R RQ+H Sbjct: 85 KFDINYIMNITDVDDKIITRGRQQH 109 >gi|159037918|ref|YP_001537171.1| cysteinyl-tRNA synthetase [Salinispora arenicola CNS-205] gi|310947215|sp|A8M264|MSHC_SALAI RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|157916753|gb|ABV98180.1| Cysteine--tRNA ligase [Salinispora arenicola CNS-205] Length = 412 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 26/320 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A MI FD++ R+ R + VTYV+N+TDIDD ++ERA ++ Sbjct: 40 MYVCGITPYDATHLGHAATMITFDLVQRVWRDAGLD--VTYVQNVTDIDDPLLERAARD- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + ++ + T F +D L + P H A IP + + ++ AY Sbjct: 97 -----GEDWKVLAMRETALFREDMVALRIIPPAHYVGAVESIPDIAERVLTLVKEEAAYR 151 Query: 147 --EANNEIIFDTSSIPNYG---SFSRR---KIDEQKMGTRVPEKYHKKNPADFILWKRST 198 + ++ FD S+ P +G + R KI ++ G P++ K++P D +LW+ + Sbjct: 152 IDDGTGDVYFDISAAPRFGYESNLGREQMLKIFPERGGD--PDRAGKRDPLDPLLWRSAR 209 Query: 199 PMEPGWESPWGRGRPG-WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADR 257 EP W WHIEC+ ++ + LG D+ GGG DLIFPHHE A + Sbjct: 210 ADEPSWPGGGLGPGRPGWHIECAVIALNLLGHRIDVQGGGNDLIFPHHECSAAHAELLTG 269 Query: 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A ++H G + L G KMSKS GN + ++ L + +RLA++ HYR Sbjct: 270 QSPFAQHYVHAGMIGLAGEKMSKSRGNLVFVSRLRADRV------DPMAVRLALMSGHYR 323 Query: 318 EPIDFTVQRLTEAEILLSKW 337 + L A+ L +W Sbjct: 324 SDRSWNDDLLVTAQKRLDRW 343 >gi|302848858|ref|XP_002955960.1| hypothetical protein VOLCADRAFT_66444 [Volvox carteri f. nagariensis] gi|300258686|gb|EFJ42920.1| hypothetical protein VOLCADRAFT_66444 [Volvox carteri f. nagariensis] Length = 650 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 7/202 (3%) Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159 +K ++F++D L C P R + ++P+++ +Q I+ +G AY +N + FDT + Sbjct: 221 AAKYEREFLEDMDALGCRRPDVLTRVSEYMPEIVNYVQRILDNGMAYVSNGSVYFDTQNF 280 Query: 160 P----NYGSFSRRKIDEQKM---GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 YG + + + G E K++ DF LWK S P EP W+SPW +GR Sbjct: 281 RACGHTYGKLNPWAVGSAALAAEGESNFETSEKRSLQDFALWKASKPGEPVWDSPWSQGR 340 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECSAM+S +G D+H GG DL FPHH+NE+AQ+ E N ++H G L+ Sbjct: 341 PGWHIECSAMASTIIGSRLDLHSGGEDLRFPHHDNELAQAEAYYHTEWWVNYFLHCGHLH 400 Query: 273 LEGRKMSKSNGNFITINELLET 294 +EG KMSKS NFITI E L+T Sbjct: 401 IEGLKMSKSLKNFITIREALQT 422 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 4/86 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRM---YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +YN+ + F + N R Y CGPTVYD AH+G+AR + FD++ R+L Y+ Sbjct: 24 LMLYNSFVDEKVPFVPVAGPNSRQITWYACGPTVYDVAHMGHARNYLSFDIVRRVLEDYF 83 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G C+ V N+TD+DDKII RAR+ + Sbjct: 84 GYNCLM-VMNVTDVDDKIILRARRNY 108 >gi|324509893|gb|ADY44145.1| Cysteinyl-tRNA synthetase [Ascaris suum] Length = 574 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 133/248 (53%), Gaps = 23/248 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 + K +F +D ++L L P R + ++P++I +Q II +G+ Y + + FDT Sbjct: 315 LAKKYENEFHEDMSKLNVLPPDVLTRVSEYVPEVIAYVQKIIDNGYGYTTKDGSVYFDTI 374 Query: 158 SIPNYGSFSRRKI------DEQKMGTRVPEKY---------HKKNPADFILWKRSTPMEP 202 + + + S K+ D +++ + E K+NP DF LWK S EP Sbjct: 375 AFESKPNHSYAKLVPEAFGDNEQLLKNMRESEGELSMGNLEEKRNPTDFALWKSSKSGEP 434 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W+SPWG+GRPGWHIECSAMSS G DIH GG DL FPHH+NEIAQ + Sbjct: 435 FWDSPWGKGRPGWHIECSAMSSQICGSKLDIHSGGFDLKFPHHDNEIAQVEAHYDYDNWV 494 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N ++H G L + G KMSKS NFITI + L + + A +R+ LM ++ + +D+ Sbjct: 495 NYFLHCGTLRIAGMKMSKSLKNFITIRDAL-------KQYTARQLRILFLMHNWTDVLDY 547 Query: 323 TVQRLTEA 330 + + A Sbjct: 548 SASSMERA 555 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K ++N+ RK F + ++ Y+CGPTVYD +H+G+AR + FD+L R++++Y+G Sbjct: 126 KFHLFNSFTRKKELFVPLSGKRVKWYICGPTVYDSSHMGHARAYLSFDILRRVMQHYFGY 185 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ H Sbjct: 186 D-VHYVMNITDIDDKIIKRARQNH 208 >gi|257068786|ref|YP_003155041.1| cysteinyl-tRNA synthetase [Brachybacterium faecium DSM 4810] gi|310947175|sp|C7MCZ4|MSHC_BRAFD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|256559604|gb|ACU85451.1| cysteinyl-tRNA synthetase [Brachybacterium faecium DSM 4810] Length = 416 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/393 (29%), Positives = 187/393 (47%), Gaps = 40/393 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T +IT + P R+YVCG T YD H+G+A D++ R LR Sbjct: 19 LRLHDTRTGRITPVVPLTPGTARLYVCGITPYDSTHLGHAATYHAADLMRRALRD--SGL 76 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISI--ITSKNTQQFVKDTTRLACLAPTHQ 122 V +N+TD+DD ++ERA + D + + + + F +D L +AP Sbjct: 77 AVEMAQNVTDVDDPLLERADR--------DGVDWRELAASQSALFAEDMEALRVIAPETY 128 Query: 123 PRATNHIPQMIYLIQNIILHGHAY------EANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 + + ++I ++ + G AY A + D ++ G S +EQ + Sbjct: 129 RSVSEAMDEIIAVVLALHARGRAYPVEAADAAGPDWYLDLAADGALGDVSGWS-EEQMLA 187 Query: 177 TRV-----PEKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYLGKV 230 P++ K+ D +LW EP W++ GRGRPGWH+EC ++ +G Sbjct: 188 VFAERGGDPDREGKRGRFDPLLWSAEREGEPAWDAGVLGRGRPGWHVECVCIAEEGIGLP 247 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ GG DLIFPHH+ A S R A + H+G + +G KMSKS GN + ++ Sbjct: 248 FDVQAGGSDLIFPHHDLSAAHSVALGR--PFAAAYAHSGMVGYQGEKMSKSLGNLVFVHR 305 Query: 291 LLETKKFGGRSWPAP-VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP 349 L+ R P VIRL ++ HYR ++T L A L + + + +G P Sbjct: 306 LV-------REGTDPMVIRLVLMAHHYRSDWEWTDGELDRAAERLKSY-RLAARRGDHRP 357 Query: 350 AVL----SALYNDLNTVSAIQALHKLARESTKN 378 A + +AL +DL+TV A++AL A + + Sbjct: 358 ATVEALRAALRDDLDTVRALEALDAWAEGGSSS 390 >gi|260825281|ref|XP_002607595.1| hypothetical protein BRAFLDRAFT_119738 [Branchiostoma floridae] gi|229292943|gb|EEN63605.1| hypothetical protein BRAFLDRAFT_119738 [Branchiostoma floridae] Length = 636 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 26/223 (11%) Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT------ 177 R + +IP++I +Q II G+ YE+N + FDT+ S K+ + G Sbjct: 146 RVSEYIPEVIEYVQTIIDKGYGYESNKSVYFDTTKFDGADSHFYAKLVPEAFGDSKAMLE 205 Query: 178 ----------RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYL 227 R+ EK ++ DF LWK S P EP W+SPWG GRPGWHIECS M+S L Sbjct: 206 GEGDLSISQDRLSEK---RSTTDFALWKASKPGEPSWDSPWGMGRPGWHIECSVMASSIL 262 Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 G DIH GG DL FPHH+NEIAQ+ + ++H+G L +EG KMSKS NFIT Sbjct: 263 GGSLDIHTGGYDLKFPHHDNEIAQAEAYYDNDHWVRYFLHSGHLTIEGCKMSKSLKNFIT 322 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 I E L K+ R +RL L+ +++ +D++ + A Sbjct: 323 IQEAL--SKYSSRQ-----LRLGFLLHSWKDTLDYSSDTMGTA 358 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 41 IGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +G+AR I FD+L R+++ Y+ V Y NITDIDDKII+RARQ + Sbjct: 1 MGHARSYISFDILRRVMKDYFNYD-VLYAMNITDIDDKIIKRARQNY 46 >gi|254584650|ref|XP_002497893.1| ZYRO0F15928p [Zygosaccharomyces rouxii] gi|186703720|emb|CAQ43411.1| Cysteinyl-tRNA synthetase [Zygosaccharomyces rouxii] gi|238940786|emb|CAR28960.1| ZYRO0F15928p [Zygosaccharomyces rouxii] Length = 746 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 26/240 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIP--- 160 +++ D L LAP R + ++P+++ ++ I+ +G+ Y + + FDT+ Sbjct: 233 EKYDDDMRLLNVLAPDVTTRVSEYVPEIVEFVKRIVDNGYGYATEDGSVYFDTTKFDRDE 292 Query: 161 ----------NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR 210 N G ++ + G+ V K++ +DF LWK S EP WESPWG Sbjct: 293 KHAYAKNQPWNKGDL---ELVSEGEGSLVGSTSGKRSSSDFALWKASKDGEPRWESPWGE 349 Query: 211 GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNG 269 GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS C D + N ++H G Sbjct: 350 GRPGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNEMAQSEACFDNYQ-WVNYFLHTG 408 Query: 270 FLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 L++EG+KMSKS NFIT+ E L + + + +RLA +T + +DF + E Sbjct: 409 HLHIEGQKMSKSLKNFITVQESL-------KMYSSRQLRLAFCLTQWNNQMDFKESLMQE 461 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%) Query: 2 KKKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 K+ +K+YN+L R F I ++ Y CGPTVYD AH+G+AR + D+ RLL+ Y Sbjct: 32 KRVLKLYNSLTRNKEVFVPISGGKSVSWYSCGPTVYDAAHMGHARNYVSIDINRRLLQDY 91 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEH 87 +G V +V+N+TDIDDKII R RQ + Sbjct: 92 FGYD-VKFVQNVTDIDDKIILRGRQNY 117 >gi|213513600|ref|NP_001133392.1| Cysteinyl-tRNA synthetase, cytoplasmic [Salmo salar] gi|209153132|gb|ACI33145.1| Cysteinyl-tRNA synthetase, cytoplasmic [Salmo salar] Length = 541 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 121/227 (53%), Gaps = 20/227 (8%) Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSFSRRKID 171 L P R + + P+++ ++ I+ +G YE+N + FDT+ YG + Sbjct: 28 LPPDVLTRVSEYCPEIVDFVKKILDNGFGYESNGSVYFDTAKFDTSQKHAYGKLVPEAVG 87 Query: 172 EQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 + K + + K++ DF LWK S P EP W+SPWG+GRPGWHIECSAM+ Sbjct: 88 DMKALQEGEGDLSVSADQLSEKRSQNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMA 147 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 LG+ DIHGGG DL FPHH+NE+AQS + ++H G L + G KMSKS Sbjct: 148 GSILGESMDIHGGGFDLRFPHHDNELAQSEAYFENDHWVRYFLHTGHLTIAGCKMSKSLK 207 Query: 284 NFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 NFITI + L A +RLA LM +++ +D++ + A Sbjct: 208 NFITIKDALAKNT-------ARQLRLAFLMHSWKDTLDYSSNTMESA 247 >gi|15828648|ref|NP_326008.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase) [Mycoplasma pulmonis UAB CTIP] gi|61216356|sp|Q98R33|SYC_MYCPU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|14089590|emb|CAC13350.1| CYSTEINYL-TRNA SYNTHETASE (CYSTEINE--TRNA LIGASE) [Mycoplasma pulmonis] Length = 596 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 125/430 (29%), Positives = 203/430 (47%), Gaps = 54/430 (12%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 ++Y+CGPTVYD HIGN R ++V D++ R + Y G+K + +V NITDIDDKIIER+ Q Sbjct: 207 FKVYLCGPTVYDEVHIGNMRSVVVVDLIVRAQK-YLGKKTL-FVHNITDIDDKIIERSIQ 264 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 S + I+ K +++ K + + P+ T++I ++ I ++ G+ Sbjct: 265 SKIS------ENKISEKYFREYKKVLKKYRIKSIDKMPKVTDNIDSIVKFINSLDKKGYV 318 Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 + ++ +FD S I NYG R+ KK +F LWK ST + Sbjct: 319 IQKDDGFVFDVSKIKNYGKRLSRE--------------DKKQVENFYLWK-STTKGVQYN 363 Query: 206 SPWGRGRPGWHIECSA-MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 GRPGWH EC+ + + + DIH GG+DL FPHHENE AQ + ++ T + Sbjct: 364 YNGFLGRPGWHSECTLFIDDIFNSQTLDIHAGGIDLTFPHHENENAQYIAKNDVKITKH- 422 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 W+H G + + +KMSKS GN I + + + ++ ++ + PI T Sbjct: 423 WLHVGQVMFKNQKMSKSLGNVIL-----------AKDFDEDIFKIILINSSVTAPIYITN 471 Query: 325 QRLTEAEILLSKWPQ-------TSTSKGIIDPA---VLSALYNDLNTVSAIQALHKLARE 374 + + A+++++K+ + S S D V D ++ + + A Sbjct: 472 ELIENAKVIINKYKKLYFKFLNLSLSFNFDDNVRYMVRKIADKDFSSFNLKLNEYIKAYN 531 Query: 375 STKNHDLLPIFNASAHILG---IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 ++ D L I ++ H L IE ++ KN +K+ LK K + AD Sbjct: 532 TSLEADKLTIVSSVIHFLNFSFIEQIEKDFRKN-----KKIYDIWQGFLKQKNYEKADMF 586 Query: 432 RKQLESKGFI 441 RK L +G I Sbjct: 587 RKILIDQGLI 596 >gi|321453850|gb|EFX65049.1| hypothetical protein DAPPUDRAFT_265305 [Daphnia pulex] Length = 676 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--- 161 ++F KD L L R + ++P+++ I I+ G AY AN + FD + + Sbjct: 206 EEFYKDMAALNVLPADVITRVSQYVPEIVDYIAKIMERGFAYSANGSVYFDVAKFDSQKN 265 Query: 162 ----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + E + KK+P DF LWK S EP W+SPWG+G Sbjct: 266 HKYAKLVPEAYGDSKALQEGEGDLSVSEDRLSEKKSPNDFALWKNSKSGEPSWDSPWGKG 325 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG D H GG+DL FPHH+NE+AQS ++ + ++H G L Sbjct: 326 RPGWHIECSVMASAILGSSMDFHTGGVDLKFPHHDNELAQSEAYYDNDEWVSYFLHTGHL 385 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++G KMSKS NFITI + L + +R+ L+ ++E +D++ + EA Sbjct: 386 TIQGCKMSKSLKNFITIQDALSRN-------SSRELRIFFLLHQWKETLDYSHSAMEEA 437 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 K+ IYN+L RK F + +NI Y CGPTVYD +H+G+AR + FD+L R+LR Y+G Sbjct: 13 KLMIYNSLTRKKEVFTPQNGNNITWYSCGPTVYDASHMGHARSYMSFDILRRVLRDYFGY 72 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 +TYV NITDIDDKII+RARQ + Sbjct: 73 D-ITYVMNITDIDDKIIKRARQNY 95 >gi|255949146|ref|XP_002565340.1| Pc22g14160 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592357|emb|CAP98704.1| Pc22g14160 [Penicillium chrysogenum Wisconsin 54-1255] Length = 800 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 153/313 (48%), Gaps = 32/313 (10%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 +T + ++F KD L L PT R T + ++ + I+ + Y + + FD + Sbjct: 245 LTKRYEERFTKDMRDLNVLDPTELTRVTEYGDEIAAFVDRIVKNNFGYATKDGSVYFDIN 304 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G S S K+ + G+ + K+ +DF LWK S P EP W S W Sbjct: 305 AFEAAGHPYARLEPWSRSDNKLAAEGEGSLASKTTEKRGASDFALWKSSKPGEPSWSSAW 364 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC----ADRIEKTANI 264 G+GRPGWHIECSAM+S LG DIH GG+DL FPHH+NE+AQS + E+ N Sbjct: 365 GKGRPGWHIECSAMASARLGNQMDIHSGGIDLAFPHHDNELAQSEAYWHGDHKHEQWVNY 424 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 ++H G L+++G KMSKS NF TI E L+ K + RS +R+ L+ +++ ++ T Sbjct: 425 FLHMGHLSIQGSKMSKSLKNFTTIREALDRKDWSPRS-----LRIVFLLGGWKDGVEITD 479 Query: 325 QRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-L 381 + S W + + + DPA L + D + ++ K HD L Sbjct: 480 DLVNTG----SSWEEKVNNFFLKVKDPAALQSSGTDTTFAADLETAKKAV------HDQL 529 Query: 382 LPIFNASAHILGI 394 FN A + I Sbjct: 530 CDSFNTPAVMASI 542 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRM--YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L + T F ID + ++ Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 23 LKVWNSLTKSKTPFVPIDSAGKKVVWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 81 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA 118 + V +V NITD+DDKII RARQ+H A ITS+ V DT + A +A Sbjct: 82 KFDVNFVMNITDVDDKIILRARQQHLFNEFITANPTITSE-----VLDTVKSAFVA 132 >gi|321478384|gb|EFX89341.1| hypothetical protein DAPPUDRAFT_303176 [Daphnia pulex] Length = 730 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 124/239 (51%), Gaps = 20/239 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--- 161 ++F KD L L R + ++P+++ I II G AY AN + F+ S + Sbjct: 202 EEFYKDMAALNVLPADVITRVSEYVPEIVDYISRIIERGLAYSANGSVYFNVSKFDSQKN 261 Query: 162 ----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 YG + E + KK+P DF LWK S EP W+SPWG+G Sbjct: 262 HKYAKLVPEAYGDSKALQEGEGDLSVSEDRLSEKKSPNDFALWKTSKSGEPSWDSPWGKG 321 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 RPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS ++ ++H G L Sbjct: 322 RPGWHIECSVMASAILGSSMDIHTGGVDLKFPHHDNELAQSEAYYDNDEWVRYFLHTGHL 381 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++G KMSKS NFITI + L + +R+ L+ ++E +D++ + EA Sbjct: 382 TIQGCKMSKSLKNFITIQDALSRN-------SSRELRIFFLLHPWKETLDYSDSAMDEA 433 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++KIYN+L RK F + NI Y CGPTVYD +H+G+AR + FD+L R+LR Y+G Sbjct: 12 ELKIYNSLTRKKEVFTPQNGKNITWYSCGPTVYDASHMGHARSYMSFDILRRVLRDYFGY 71 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 +TYV NITDIDDKII+RARQ + Sbjct: 72 D-ITYVMNITDIDDKIIKRARQNY 94 >gi|310799373|gb|EFQ34266.1| tRNA synthetase class I catalytic domain-containing protein [Glomerella graminicola M1.001] Length = 804 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 24/256 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T ++F D L CL P R T ++PQ+ + I+ G AYE++ + FD ++ Sbjct: 210 LTQSMEREFFDDMDALNCLRPDVITRVTEYVPQIAEFVARIVDKGFAYESDGSVYFDITA 269 Query: 159 IPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + + E G K+N DF LWK+S EP W+S WG Sbjct: 270 FEKAGNTYARLRPGNRNDKSLQEDGEGALSKNLGEKRNEGDFALWKKSKKGEPYWDSRWG 329 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC----ADRIEKT-ANI 264 +GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS + E T N Sbjct: 330 QGRPGWHIECSVMASDILGAQMDIHSGGVDLAFPHHDNELAQSEAYYVDNSKGEHTWVNN 389 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 ++H G L++ G KMSKS NF TI + L T ++ + +R+ LM + + ++ + Sbjct: 390 FLHMGHLSISGSKMSKSLKNFQTIQDALAT------TYTSRGMRIVFLMGKWNDGVEISP 443 Query: 325 QRLTEAEILLSKWPQT 340 +A S W T Sbjct: 444 DMRAQA----SSWEAT 455 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 2/85 (2%) Query: 3 KKIKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +K++N+L+ + F I P + Y CGPTVYD +H+G+AR + D++ R++ +Y+ Sbjct: 2 ESLKLHNSLKPGQPVPFTPIKPGKVSWYACGPTVYDKSHLGHARNYVSTDIIRRIMMHYF 61 Query: 62 GEKCVTYVRNITDIDDKIIERARQE 86 G V +V NITD+DDKII +AR++ Sbjct: 62 GAD-VKFVMNITDVDDKIIIKARRQ 85 >gi|149912421|ref|ZP_01900960.1| cysteinyl-tRNA synthetase [Moritella sp. PE36] gi|149804500|gb|EDM64593.1| cysteinyl-tRNA synthetase [Moritella sp. PE36] Length = 276 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 45/291 (15%) Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 P EP W SPWG GRPGWHIECSAM++ LG+VFDIHGGG DL+FPHHENE+AQSCCA Sbjct: 2 PGEPRWVSPWGEGRPGWHIECSAMNNKILGEVFDIHGGGSDLMFPHHENEVAQSCCAHNG 61 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 E N W+H+G + ++ KMSKS NF TI ++LE K+ G S +R ++ HYR Sbjct: 62 EYV-NTWMHSGMVQIDKVKMSKSLNNFFTIRDVLE--KYDGES-----VRYFLISGHYRS 113 Query: 319 PIDFTVQRLTEAEILLSKWPQTSTSKGI----IDPAV----------LSALYNDLNTVSA 364 ++++ L +A L + + +G+ ID V +A+ +D NT A Sbjct: 114 QLNYSEDNLKQARASLERL--YTALRGVTVAEIDGVVPDCEAYVETFKAAMDDDFNTPEA 171 Query: 365 IQALHKLARE--------STKNHDLLPIFNASAHILGI------EVCKEHLNKNISIA-I 409 L +LA+E + +L +LG+ + + +A I Sbjct: 172 FPVLFELAKEINRIKETDEKRAGELAAQLITFGEVLGLLSQDPEAFLQGDTGADDEVAEI 231 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 E L+++R K + AD R +L + G +LED G T W++K Sbjct: 232 EALIKQRNDARVSKDWGMADDARDKLNALGIVLED------GANGTSWRRK 276 >gi|316970881|gb|EFV54739.1| cysteinyl-tRNA synthetase, cytoplasmic [Trichinella spiralis] Length = 786 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 124/248 (50%), Gaps = 37/248 (14%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGS 164 Q F D L L P R + +IP+++ + ++ G AYE + FDT + Sbjct: 214 QDFDLDMAALNVLPPDVVTRVSEYIPEVVAFVDGLVKRGFAYEVQGSVYFDTVT------ 267 Query: 165 FSRRKIDEQKMGTRVPEKYH----------------------KKNPADFILWKRSTPMEP 202 F R D + G +PE K+ DF LWK S P EP Sbjct: 268 FGR--TDGHRYGRLLPEAVQDTSLLVEGEGELSLGDENQARQKRFSGDFALWKASKPGEP 325 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 W SPWG GRPGWHIECSAM+S G+ D+H GG DL FPHH+NE+AQS Sbjct: 326 AWPSPWGPGRPGWHIECSAMASAICGEQLDVHAGGFDLKFPHHDNELAQSEAYHGHAPWV 385 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 ++H G L ++G KMSKS NF+TI + L+ + + IRL LM ++ EP+D+ Sbjct: 386 RYFLHAGTLRIQGLKMSKSLKNFVTIKQALQ-------QYTSRQIRLLFLMHNWAEPLDY 438 Query: 323 TVQRLTEA 330 + Q + +A Sbjct: 439 SPQTMEKA 446 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L RK F + + Y+CGPTVYD AH+G+AR I FD+L R+L++Y+G Sbjct: 29 LKLYNSLTRKKEIFIPRHGNQVNWYICGPTVYDAAHMGHARSYISFDILRRVLQHYFGYD 88 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +V N+TDIDDKII RARQ H Sbjct: 89 -VLFVMNVTDIDDKIIVRARQRH 110 >gi|322694236|gb|EFY86071.1| cysteinyl-tRNA synthetase [Metarhizium acridum CQMa 102] Length = 799 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 134/247 (54%), Gaps = 20/247 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F++D L L P R T ++PQ+ ++ I+ G AYEA + FD ++ Sbjct: 212 LTKRMEAVFLEDMDNLNVLRPDVITRVTEYMPQIAKFVEQIVDKGFAYEAEGSVYFDIAA 271 Query: 159 IPNYG-SFSRRKID--------EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + D E+ G+ K+ DF LWK+S EP W S WG Sbjct: 272 FQKAGNTYARLRPDSKNDKALQEEGEGSLSTNLGGKRGAGDFALWKKSKAGEPYWPSKWG 331 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKT-ANI 264 GRPGWHIECS M+S LG D+H GG+DL FPHH+NE+AQS C + E T N Sbjct: 332 DGRPGWHIECSVMASDVLGSRMDVHSGGVDLAFPHHDNELAQSEAYFCQHGKGEHTWVNY 391 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 ++H G L++ G KMSKS NF TI++ L T ++ A +R+ LM + + ++ + Sbjct: 392 FLHMGHLSISGSKMSKSLKNFQTISDALAT------TYTARSMRIVFLMGRWNDGVEISP 445 Query: 325 QRLTEAE 331 ++A+ Sbjct: 446 DMRSKAD 452 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 74/127 (58%), Gaps = 13/127 (10%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K++N+L+ F ++P + Y CGPTVYD +H+G+AR + D++ R++ +Y+G Sbjct: 4 LKVHNSLKPGPPVPFVPMEPGKVSWYACGPTVYDKSHLGHARNYVASDIIRRIMMHYFGF 63 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV N+TD+DDKII +AR++ ++ + +Q+ +D R LA + Sbjct: 64 N-VKYVMNMTDVDDKIIIKARRQR----------LLDLEKKKQYSEDELRNLGLA-AFRA 111 Query: 124 RATNHIP 130 A+ ++P Sbjct: 112 YASKNLP 118 >gi|238504958|ref|XP_002383708.1| cysteinyl-tRNA synthetase [Aspergillus flavus NRRL3357] gi|220689822|gb|EED46172.1| cysteinyl-tRNA synthetase [Aspergillus flavus NRRL3357] Length = 874 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 150/295 (50%), Gaps = 28/295 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T + ++F+KD L L P R T + ++ ++ I+ + Y ++ + FD Sbjct: 313 LTKRYEERFLKDMRDLNVLDPNEITRVTEYGAEIADFVEKIVKNNFGYVTDDGSVYFDIE 372 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G + S K+ + G+ + K++ +DF LWK S P EP W S W Sbjct: 373 AFEAAGHPYARLEPWNRSDSKLLAEGEGSLTKKATDKRSASDFALWKASKPGEPSWASSW 432 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC--ADR-----IEKT 261 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS AD E+ Sbjct: 433 GRGRPGWHIECSAMASARLGKQLDIHSGGVDLAFPHHDNELAQSEAYWADSHNHSHDEQW 492 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N + H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +++ ++ Sbjct: 493 VNYFFHMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWKDGVE 547 Query: 322 FTVQRLTEAEILLSKWPQTSTSK--GIIDPAVLSALYNDLNTVSAIQALHKLARE 374 T ++ S W + + + DPA L D +A+ K E Sbjct: 548 ITDDLVSAG----SSWEEKVNNFFIKVKDPAALQGSGTDDTLATALADAQKAVYE 598 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R F ID + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 94 LKVWNSLTRSKNPFIPIDKEGKKVSWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 152 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V +V NITD+DDKII R RQ+H Sbjct: 153 KFDVNFVMNITDVDDKIILRGRQQH 177 >gi|317155055|ref|XP_003190552.1| cysteinyl-tRNA synthetase [Aspergillus oryzae RIB40] Length = 806 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 150/295 (50%), Gaps = 28/295 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTS 157 +T + ++F+KD L L P R T + ++ ++ I+ + Y ++ + FD Sbjct: 245 LTKRYEERFLKDMRDLNVLDPNEITRVTEYGAEIADFVEKIVKNNFGYVTDDGSVYFDIE 304 Query: 158 SIPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G + S K+ + G+ + K++ +DF LWK S P EP W S W Sbjct: 305 AFEAAGHPYARLEPWNRSDSKLLAEGEGSLTKKATDKRSASDFALWKASKPGEPSWASSW 364 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC--AD-----RIEKT 261 GRGRPGWHIECSAM+S LGK DIH GG+DL FPHH+NE+AQS AD E+ Sbjct: 365 GRGRPGWHIECSAMASARLGKQLDIHSGGVDLAFPHHDNELAQSEAYWADSHNHSHDEQW 424 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N + H G L+++G KMSKS NF TI E LE K++ RS +R+ L+ +++ ++ Sbjct: 425 VNYFFHMGHLSIQGSKMSKSLKNFTTIREALERKEWTPRS-----LRIVFLLGGWKDGVE 479 Query: 322 FTVQRLTEAEILLSKWPQTSTS--KGIIDPAVLSALYNDLNTVSAIQALHKLARE 374 T ++ S W + + + DPA L D +A+ K E Sbjct: 480 ITDDLVSAG----SSWEEKVNNFFIKVKDPAALQGSGTDDTLATALADGQKAVYE 530 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R F ID + Y CGPTVYD AH+G+AR + D++ R++R Y+ Sbjct: 26 LKVWNSLTRSKNPFIPIDKEGKKVSWYACGPTVYDDAHLGHARNYVSTDIIRRIMRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V +V NITD+DDKII R RQ+H Sbjct: 85 KFDVNFVMNITDVDDKIILRGRQQH 109 >gi|156547291|ref|XP_001606432.1| PREDICTED: similar to cysteinyl-tRNA synthetase [Nasonia vitripennis] Length = 735 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 123/229 (53%), Gaps = 20/229 (8%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS-------- 158 F KD L P R + ++P+++ I+ II +G AYE+N + FD + Sbjct: 213 FHKDMDALNVWRPNVLTRVSEYVPEIVAFIEKIIANGLAYESNGSVYFDVKAFDKSEKHY 272 Query: 159 ----IPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 +P YG S + E + K++ DF LWK S EP W+SPWG+GRP Sbjct: 273 YAKLVPEAYGDTSSLQEGEGDLSVSADRLSEKRSVTDFALWKSSKAGEPWWDSPWGKGRP 332 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S G+ DIH GG+DL FPHH+NE+AQ+ ++H+G L + Sbjct: 333 GWHIECSVMASAICGESLDIHTGGVDLKFPHHDNELAQAEAYFDNSHWVRYFLHSGHLTI 392 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 G KMSKS NFITI E L KK R +RLA L+ +++ +D+ Sbjct: 393 SGCKMSKSLKNFITIKEAL--KKHSARQ-----LRLAFLLHSWKDTLDY 434 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF + + Y CGPTVYD +H+G+AR I FD+L R+L Y+ Sbjct: 20 LKLYNSLTRQKEEFVPQYRNRVLWYSCGPTVYDASHMGHARSYISFDILRRVLSDYFNFD 79 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ H Sbjct: 80 -VVYVMNITDIDDKIIKRARQNH 101 >gi|308177410|ref|YP_003916816.1| cysteine--tRNA ligase [Arthrobacter arilaitensis Re117] gi|307744873|emb|CBT75845.1| cysteine--tRNA ligase [Arthrobacter arilaitensis Re117] Length = 420 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 120/420 (28%), Positives = 200/420 (47%), Gaps = 46/420 (10%) Query: 5 IKIYNTLE--RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++NT +++T + MYVCG T YD H+G+A + FD++ R R Sbjct: 19 LELFNTATGTQQVTAPADQAAAPASMYVCGITPYDATHMGHAATYVTFDLVQRTWRD--A 76 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y +NITD+DD ++ERA N + Q F D L + P + Sbjct: 77 GRSVAYTQNITDVDDPLLERAE------ATNVDWRELAESQIQLFRDDMEALNVIPPQNY 130 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDT----------SSIPNYGSF 165 A I ++ +++ ++ AY ++ FDT S+ NY Sbjct: 131 IGAVESIHWLVPVVEQLLEADLAYVVPAGADGVEGDVYFDTMGAQNDAWKLGSVSNYDRE 190 Query: 166 SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAMSS 224 + + ++ G P++ K++ D +LW+ + EP W+ G GRPGWHIECS ++ Sbjct: 191 TMLRFFAERGGD--PQRAGKRDALDPLLWRAAREGEPSWDGGKLGEGRPGWHIECSVIAR 248 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 L F + GGG DLIFPHHE A + D E A ++H G + L+G KMSKS GN Sbjct: 249 KTLPAPFTVQGGGSDLIFPHHEFSAAHAAAGDHAE-LAQTYVHTGMVGLDGEKMSKSLGN 307 Query: 285 FITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS 343 + +++L + G PV IR +L HYR +T + L A+ ++ W + S Sbjct: 308 LVLVSKL----RAAGVE---PVAIRAVLLSQHYRTDWFWTDELLAGAQQRVATWRKALES 360 Query: 344 KGIIDPAVLSA-----LYNDLNTVSAIQALHKLARE--STKNHDLLPIFNASAHILGIEV 396 + D + A + NDL+ SA++A+ + A + S++ + + +LG+++ Sbjct: 361 ASMQDAQQVIAGIREHMANDLDAPSALKAIDQWATQPASSQGEGATALRDGINALLGLKL 420 >gi|313678172|ref|YP_004055912.1| cysteine--tRNA ligase [Mycoplasma bovis PG45] gi|312950555|gb|ADR25150.1| cysteine--tRNA ligase [Mycoplasma bovis PG45] Length = 413 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/318 (34%), Positives = 160/318 (50%), Gaps = 23/318 (7%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVY+ HIGN RP++ FD + + R E +V NITD+DDKII +A Sbjct: 2 LKIYVCGPTVYNDPHIGNLRPIVTFDFMLKAYRELGKE--FKFVHNITDVDDKIINKA-- 57 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 I ++ S + S + + K +L + + T++I + I + G+A Sbjct: 58 ----IQLDIKESEVASYYFKSYQKILRKLNVNTISKIEKVTHNISYINKYINRLYESGNA 113 Query: 146 Y-EANNEIIFDT-SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 Y + N + FD + +YG S + +D HKK ADF LWK ST + Sbjct: 114 YKDVNGNVWFDVLKNKDSYGVVSNQNLDNMVFE---ENSLHKKFKADFALWK-STAVGIK 169 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGK-VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 + S +G GRPGWH EC A+ + G+ DIHGGG+DL FPHHENE Q T Sbjct: 170 FYSNFGAGRPGWHTECCALIDKHFGQNGVDIHGGGMDLTFPHHENENIQHYALYGKPLTK 229 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 WI G LNL+G KMSKS GN I N+ + ++ A +++L I+ Sbjct: 230 E-WIRCGQLNLDGEKMSKSVGNVILANDFI-------NAYGATILKLIFFNAKVSANINI 281 Query: 323 TVQRLTEAEILLSKWPQT 340 T + + E + K+ + Sbjct: 282 TKELIENMEAIEIKYKKV 299 >gi|110757574|ref|XP_394641.3| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like [Apis mellifera] Length = 729 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 129/238 (54%), Gaps = 34/238 (14%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGS 164 Q+F KD L L P R + +IP++I I+ II +G AYE+N + FD S+ Sbjct: 211 QEFHKDMDSLNVLRPNVLTRVSEYIPEIIEFIKKIIENGIAYESNGSVYFDVSTF----- 265 Query: 165 FSRRKIDEQKMGTRVPEKY-------------------HKKNPADFILWKRSTPMEPGWE 205 K D+ VPE Y K++P DF LWK S EP WE Sbjct: 266 ---NKQDKHYYAKLVPEAYGDTLSLQEGEGDLSTLEISEKRSPIDFALWKCSKEGEPWWE 322 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 SPWG+GRPGWHIECS M+S G+ DIH GG+DL FPHH+NEIAQ+ + Sbjct: 323 SPWGKGRPGWHIECSVMASIICGESLDIHTGGVDLKFPHHDNEIAQAEAYFNNSNWVRYF 382 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +H+G L + G KMSKS NFITI + L KK+ R +RLA L+ +++ +D++ Sbjct: 383 LHSGHLTISGCKMSKSLKNFITIQDAL--KKYSARQ-----LRLAFLLHSWKDTLDYS 433 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R F ++I Y CGPTVYD +H+G+AR + FD++ R+L Y+G Sbjct: 20 LKLYNSLTRNKEIFVPQFGNHILWYSCGPTVYDASHMGHARSYMSFDIIRRVLSDYFGYD 79 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII+RARQ + Sbjct: 80 -ILYVMNITDIDDKIIKRARQNY 101 >gi|327292372|ref|XP_003230885.1| cysteinyl-tRNA synthetase [Trichophyton rubrum CBS 118892] gi|326466921|gb|EGD92374.1| cysteinyl-tRNA synthetase [Trichophyton rubrum CBS 118892] Length = 804 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 113/368 (30%), Positives = 177/368 (48%), Gaps = 63/368 (17%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T + +F++D L L P R T +P+++ ++ II H Y + + FD Sbjct: 243 LTREYEDRFMQDVRDLNVLDPDEITRVTEFMPEIVSFVERIIEHKFGYVTPDGSVYFDIE 302 Query: 158 SIPNYGS-------FSRRKIDEQKMG--TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ ++R + Q G + ++ KK+ ADF LWK S EP W SPW Sbjct: 303 NFEAAGNSYARLEPWNRNDANRQSEGEGSLSNKQAEKKSSADFALWKASKAGEPSWPSPW 362 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------SCCADRIEKTA 262 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQ S C+ + Sbjct: 363 GNGRPGWHIECSAMASSRLGKQMDIHSGGIDLAFPHHDNEIAQSEAYWSSTCSHV--QWV 420 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N +IH G L+++G KMSKS NF TI + L + RS +R+ L+ +R+ I+ Sbjct: 421 NYFIHMGHLSIQGSKMSKSLKNFTTIRDALRRGDWTPRS-----LRIVFLLGGWRDGIEI 475 Query: 323 TVQ-----------------RLTEAEILLSKWPQTSTSKGIIDPAVLSA--------LYN 357 T + R+ + + L P+T++ + + PA L A L + Sbjct: 476 TDEIVKAGNAWEEKVNNFFIRVKDPSVKL---PETTSDEEL--PAALKAAQHSVHKHLCD 530 Query: 358 DLNTVSAIQALHKL----------ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 NT A+ A+ +L A + H + + +I G+ + ++NI Sbjct: 531 SFNTAGAMYAISELITKFNNTNEAALSAQNTHAVAKWLTSMVNIFGLNSTAKPDSENIGW 590 Query: 408 AIEKLVQE 415 +++ +E Sbjct: 591 HGDEIAEE 598 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 19/156 (12%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 26 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQ---------EHPSIPINDAISIITSKNTQQFVKDTTR 113 + V Y+ NITD+DDKII R RQ EHPS I+ + I + ++ D Sbjct: 85 KFDVRYIMNITDVDDKIITRGRQQHLYNQFSAEHPS--IDQELLDIAKAAYEAYITDNL- 141 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEAN 149 L P P TN + + +L G E N Sbjct: 142 --PLVPVSTP--TNEFKETAEKVYAAVLDGKPLEGN 173 >gi|219122536|ref|XP_002181599.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406875|gb|EEC46813.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 373 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 115/353 (32%), Positives = 169/353 (47%), Gaps = 50/353 (14%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE----------------KCVTYV 69 I Y CGPTVY AH+G+AR + D++ R+L + Y + +V Sbjct: 1 IAFYTCGPTVYAPAHLGHARTYVCLDIVRRVLEHQYAQHRGGSSNSTMPSSPVPPPPLFV 60 Query: 70 RNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHI 129 N+TD+DDKI+ A + ++ +++ F D RL L P R T H+ Sbjct: 61 MNVTDVDDKILATAAARDETDSLSSPLALARHYEA-AFWSDLDRLNVLRPHVVTRVTEHV 119 Query: 130 PQMIY-LIQNIILHGHAYEA-NNEIIFD-------TSSIPNYGSFSRRKIDEQKMGTRVP 180 I IQ ++ +G AY A + ++ FD T++ YG + + +R+ Sbjct: 120 ETAILPYIQRLVDNGTAYCATSGDVYFDVRAFEDRTNARTRYGKLA-PPVSATDFYSRLD 178 Query: 181 EKYH--KKNPADFILWKRSTPMEP-GWESP-WGRGRPGWHIECSAMSSHYLGKV-----F 231 + K++P DF+LWKR E W +P WG GRPGWHIECSAM + F Sbjct: 179 QTAETVKRDPRDFVLWKRRKEGEALFWTAPVWGEGRPGWHIECSAMIQAVQEQFQQTHRF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCC-----ADRIEKTA-------NIWIHNGFLNLEGRKMS 279 +H GG+DL FPHH NEIAQ+ D + T WIH G ++++G KMS Sbjct: 239 VVHAGGVDLQFPHHTNEIAQAEAHVLPDLDNVTDTTLPVQEWIPHWIHTGHVHIDGLKMS 298 Query: 280 KSNGNFITINELLETKKFGGRSWPAPVIRLAML--MTHYREPIDFTVQRLTEA 330 KS NF++I ELL+ S PA RL L YR P ++ ++++ Sbjct: 299 KSLKNFVSIEELLQDDNPSSLSSPADDFRLWCLGMSGSYRGPATYSRDAVSQS 351 >gi|302657026|ref|XP_003020246.1| hypothetical protein TRV_05685 [Trichophyton verrucosum HKI 0517] gi|291184058|gb|EFE39628.1| hypothetical protein TRV_05685 [Trichophyton verrucosum HKI 0517] Length = 804 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 175/365 (47%), Gaps = 57/365 (15%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T + +F++D L L P R T +P+++ ++ II H Y + + FD Sbjct: 243 LTKEYEDRFMQDVRDLNVLDPDEITRVTEFMPEIVSFVERIIEHKFGYVTPDGSVYFDIE 302 Query: 158 SIPNYGS-------FSRRKIDEQKMG--TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ ++R + Q G + ++ KK+ ADF LWK S EP W SPW Sbjct: 303 NFEAAGNSYARLEPWNRNDANRQSEGEGSLSNKQAEKKSSADFALWKASKAGEPSWPSPW 362 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------SCCADRIEKTA 262 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQ S C+ + Sbjct: 363 GNGRPGWHIECSAMASSRLGKQMDIHSGGIDLAFPHHDNEIAQSEAYWSSTCSHV--QWV 420 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N +IH G L+++G KMSKS NF TI + L+ + RS +R+ L+ +R+ I+ Sbjct: 421 NYFIHMGHLSIQGSKMSKSLKNFTTIRDALQRGDWTPRS-----LRIVFLLGGWRDGIEI 475 Query: 323 TVQ--------------RLTEAEILLSKWPQTSTSKGIIDPAVLSA--------LYNDLN 360 T + A+ K P+T++ + + PA L A L + N Sbjct: 476 TDEIVKAGNAWEEKVNNFFIRAKDPSVKLPETTSDEEL--PAALKAAQDSVHKHLCDSFN 533 Query: 361 TVSAIQALHKL----------ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 T A+ A+ +L A + H + + +I G+ ++NI + Sbjct: 534 TAGAMYAISELITKFNNTSEAALSAQNTHAVAKWLTSMVNIFGLNSTAGPDSENIGWHGD 593 Query: 411 KLVQE 415 ++ +E Sbjct: 594 EIAEE 598 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 26 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V Y+ NITD+DDKII R RQ+H Sbjct: 85 KFDVKYIMNITDVDDKIITRGRQQH 109 >gi|302506132|ref|XP_003015023.1| hypothetical protein ARB_06783 [Arthroderma benhamiae CBS 112371] gi|291178594|gb|EFE34383.1| hypothetical protein ARB_06783 [Arthroderma benhamiae CBS 112371] Length = 844 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 175/365 (47%), Gaps = 57/365 (15%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T++ +F++D L L P R T +P+++ ++ II H Y + + FD Sbjct: 283 LTTEYENRFMQDVRDLNVLDPDEITRVTEFMPEIVSFVERIIEHKFGYVTPDGSVYFDIE 342 Query: 158 SIPNYGS-------FSRRKIDEQKMG--TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ ++R + Q G + ++ KK+ ADF LWK S EP W SPW Sbjct: 343 NFEAAGNSYARLEPWNRNDANRQSEGEGSLSNKQAEKKSSADFALWKASKAGEPSWPSPW 402 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------SCCADRIEKTA 262 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQ S C+ + Sbjct: 403 GNGRPGWHIECSAMASSRLGKQMDIHSGGIDLAFPHHDNEIAQSEAYWSSTCSHV--QWV 460 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N +IH G L+++G KMSKS NF TI + L + RS +R+ L+ +R+ I+ Sbjct: 461 NYFIHMGHLSIQGSKMSKSLKNFTTIRDALRRGDWTPRS-----LRIVFLLGGWRDGIEI 515 Query: 323 TVQ--------------RLTEAEILLSKWPQTSTSKGIIDPAVLSA--------LYNDLN 360 T + A+ K P+T++ + + PA L A L + N Sbjct: 516 TDEIVKAGNAWEEKVNNFFIRAKDPSVKLPETTSDEEL--PAALKAAQDSVHKHLCDSFN 573 Query: 361 TVSAIQALHKL----------ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 T A+ A+ +L A + H + + +I G+ ++NI + Sbjct: 574 TAGAMYAISELITKFNNTSEAALSAQNTHAVAKWLTSMVNIFGLNSTAGPDSENIGWYGD 633 Query: 411 KLVQE 415 ++ +E Sbjct: 634 EIAEE 638 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 23/160 (14%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 66 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 124 Query: 63 EKCVTYVRNITDIDDKIIERARQ---------EHPSIPINDAISIITSKNTQQ--FVKDT 111 + V Y+ NITD+DDKII R RQ EHPSI D + T+K + K+ Sbjct: 125 KFDVKYIMNITDVDDKIITRGRQQHLYNQFSAEHPSI---DQELLDTAKAAYEAYITKNL 181 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 + PTH+ + T + +Y +L G E N++ Sbjct: 182 PLVPVSTPTHELKDT---AEKVYA---AVLDGKPLEGNSK 215 >gi|322706523|gb|EFY98103.1| cysteinyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23] Length = 799 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T + F++D L L P R T ++PQ+ ++ I+ G AYEA + FD ++ Sbjct: 212 LTKRMEAVFLEDMDNLNVLRPDVITRVTEYVPQIAKFVEQIVDKGFAYEAEGSVYFDIAA 271 Query: 159 IPNYG-SFSRRKID--------EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + D E+ G+ K+ DF LWK+S EP W S WG Sbjct: 272 FQKAGNTYARLRPDSKNNKALQEEGEGSLSTNLGGKRGAGDFALWKKSKAGEPYWPSKWG 331 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKT-ANI 264 GRPGWHIECS M+S LG D+H GG+DL FPHH+NE+AQS C + E T N Sbjct: 332 DGRPGWHIECSVMASDVLGSRMDVHSGGVDLAFPHHDNELAQSEAYFCQHGKGEHTWVNY 391 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T ++ A +R+ LM + + ++ + Sbjct: 392 FLHMGHLSISGSKMSKSLKNFQTIADALAT------TYTARSMRIVFLMGRWNDGVEIS 444 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 2/83 (2%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 IK++N+L+ F ++P + Y CGPTVYD +H+G+AR + D++ R++ +Y+G Sbjct: 4 IKVHNSLKPGPPVPFVPMEPGKVSWYACGPTVYDKSHLGHARNYVTSDIIRRIMMHYFGF 63 Query: 64 KCVTYVRNITDIDDKIIERARQE 86 V YV N+TD+DDKII +AR++ Sbjct: 64 N-VKYVMNMTDVDDKIIIKARRQ 85 >gi|320580808|gb|EFW95030.1| Cysteinyl-tRNA synthetase [Pichia angusta DL-1] Length = 737 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 128/234 (54%), Gaps = 17/234 (7%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII------FDTSSI 159 ++ +D L L PT R + ++P+++ +Q II G+AY ++ + FD Sbjct: 215 KYDEDMAALNVLPPTIVTRVSEYVPEIVAFVQQIIDKGYAYATSDGSVYFNVAKFDKDPA 274 Query: 160 PNYGS---FSRRKIDEQKMGT-RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215 Y +S+ ++ + G + K N +DF LWK S EP W SPWG GRPGW Sbjct: 275 HEYAKLQPWSKGNLELLEDGEGSLSAAQGKLNASDFALWKASKAGEPSWPSPWGPGRPGW 334 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIECS M++ ++G DIH GG+DL FPHH+NE+AQS ++ N ++H G L++EG Sbjct: 335 HIECSVMAADFVGDKLDIHSGGIDLAFPHHDNELAQSEAHYDCKQWVNYFLHTGHLHIEG 394 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 +KMSKS NFITI E L GR + A +RL + + +DF L E Sbjct: 395 QKMSKSLKNFITIEEAL------GR-YSARQLRLCFALVQWNNALDFKESLLNE 441 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R F + Y CGPTVY+ +H+G+AR + D+ R+L+ Y+G V Sbjct: 17 LYNTLTRSKVPFVPSSSDEVTWYSCGPTVYNSSHMGHARNYVTIDINRRILQDYFGYN-V 75 Query: 67 TYVRNITDIDDKIIERARQEH 87 +V+N+TDIDDKII +ARQEH Sbjct: 76 KFVQNVTDIDDKIIIKARQEH 96 >gi|330939693|gb|EGH42992.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 187 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 119/192 (61%), Gaps = 9/192 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIEAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWK 195 K++P DF+LWK Sbjct: 174 SKEDPLDFVLWK 185 >gi|299751746|ref|XP_002911681.1| cysteinyl-tRNA synthetase [Coprinopsis cinerea okayama7#130] gi|298409516|gb|EFI28187.1| cysteinyl-tRNA synthetase [Coprinopsis cinerea okayama7#130] Length = 801 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/269 (36%), Positives = 133/269 (49%), Gaps = 41/269 (15%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSF 165 F +D L L PT R + IP+ I +Q II +G AY + FD + G + Sbjct: 241 FNEDLRTLNILPPTVTTRVSEFIPENIAFVQQIIDNGFAYAIPGGTVYFDVDAFERAGHY 300 Query: 166 ----------SRRKIDEQKMGTRVP-------------EKYHKKNPADFILWKRSTPMEP 202 K +E P EK K++P DF LWK+S EP Sbjct: 301 YAKLEPGNRKGEAKQEEDTPAVEAPTNVATTSEAEIQNEKAQKRSPRDFALWKKSRVGEP 360 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC-------- 254 GWESPWG GRPGWHIECSAM+S LG FDIH GG+DL FPHH+NE+AQS Sbjct: 361 GWESPWGYGRPGWHIECSAMASQVLGAQFDIHSGGIDLAFPHHDNELAQSEAYWHKNPKE 420 Query: 255 ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 + + N +IH G L++ G KMSKS NFI+I + L + W A +R+ +M Sbjct: 421 SRGPVQWVNYFIHMGHLSIAGSKMSKSLKNFISIRDALASG-----DWTARKLRILFMMG 475 Query: 315 HYREPIDFTVQRLTEAEILLSKWPQTSTS 343 ++ ++ + E ++ W +T T+ Sbjct: 476 GWKGGLEISQNFRAEVDL----WEKTVTN 500 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 60/83 (72%), Gaps = 3/83 (3%) Query: 7 IYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +YN+L + T F +DPS + Y CGPTVYD H+G+AR + DVL R++R Y+G + Sbjct: 26 LYNSLTKTKTPFIPVDPSGRKVTWYCCGPTVYDAGHLGHARNYLTTDVLRRIMRDYFGYE 85 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +V+N+TD+DDKII+RAR++H Sbjct: 86 -VEFVQNVTDVDDKIIKRAREQH 107 >gi|152965802|ref|YP_001361586.1| cysteinyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] gi|310947187|sp|A6W933|MSHC_KINRD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|151360319|gb|ABS03322.1| Cysteine--tRNA ligase [Kineococcus radiotolerans SRS30216] Length = 419 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 175/361 (48%), Gaps = 36/361 (9%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCG T YD H+G+A + FD+L R R + V YV+N+TD+DD ++ERA E Sbjct: 41 LYVCGITPYDATHLGHANTYVAFDLLGRAWRDAGLD--VRYVQNVTDVDDPLLERA--EA 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + D + + F D L+ + P + + +++++ G AY Sbjct: 97 TGVDWRD----LAESQVELFRGDMEALSVVPPQRYLGVVEAVDLVAEAVRDLLAAGAAYR 152 Query: 148 A-------NNEIIFDTSSIPNYGSFSRRKID------EQKMGTRVPEKYHKKNPADFILW 194 + ++ F + +G+ ++ ++ G P++ K+NP D +LW Sbjct: 153 VPGTDGGPDGDVYFPVDADAAFGTVGGYDLETMLALSAERGGD--PQRPGKRNPLDPLLW 210 Query: 195 KRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS- 252 + P EP WE+ GRGRPGWHIEC+A++ +LG D+ GG DL+FPHHE A + Sbjct: 211 RVERPGEPAWEAGELGRGRPGWHIECTAIALEHLGMPIDVQAGGSDLVFPHHEMGAAHAH 270 Query: 253 CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 R A + H+G + L+G KMSKS GN + ++ L+ A V+RLA++ Sbjct: 271 LLRPRARPFARAYAHSGMVALDGEKMSKSKGNLVLVSRLVAAGVP------AAVVRLAIV 324 Query: 313 MTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-----LYNDLNTVSAIQA 367 H+R ++T + L +A +W + L A L +DL+ A+ A Sbjct: 325 DHHWRTDWEWTDEVLAQARARHERWSAAVAAPAGPPAEALLATVRERLADDLDAPGAVAA 384 Query: 368 L 368 + Sbjct: 385 V 385 >gi|326480593|gb|EGE04603.1| cysteinyl-tRNA synthetase [Trichophyton equinum CBS 127.97] Length = 790 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 174/365 (47%), Gaps = 57/365 (15%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T + +F++D L L P R T +P+++ ++ II H Y + + FD Sbjct: 243 LTKEYEDRFMQDVRDLNVLDPDEITRVTEFMPEIVSFVERIIEHKFGYVTPDGSVYFDIE 302 Query: 158 SIPNYGS-------FSRRKIDEQKMG--TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ ++R + Q G + ++ KK+ ADF LWK S EP W SPW Sbjct: 303 NFEAAGNSYARLEPWNRNDANRQSEGEGSLSNKQAKKKSSADFALWKASKAGEPSWPSPW 362 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------SCCADRIEKTA 262 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQ S C+ + Sbjct: 363 GNGRPGWHIECSAMASSRLGKQMDIHSGGIDLAFPHHDNEIAQSEAYWSSTCSHV--QWV 420 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N +IH G L+++G KMSKS NF TI + L + RS +R+ L+ +R+ I+ Sbjct: 421 NYFIHMGHLSIQGSKMSKSLKNFTTIRDALRRGDWTPRS-----LRIVFLLGGWRDGIEI 475 Query: 323 TVQ--------------RLTEAEILLSKWPQTSTSKGIIDPAVLSA--------LYNDLN 360 T + A+ K P+T++ + + PA L A L + N Sbjct: 476 TDEIVKAGNAWEEKVNNFFIRAKDPSVKLPETTSDEEL--PAALKAAQDSVHKHLCDSFN 533 Query: 361 TVSAIQALHKL----------ARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIE 410 T A+ A+ +L A + H + + +I G+ ++NI + Sbjct: 534 TAGAMYAISELITKFNNTNEAALSAQNTHAVAKWLTSMVNIFGLNSTAGPDSENIGWYGD 593 Query: 411 KLVQE 415 ++ +E Sbjct: 594 EIAEE 598 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 23/160 (14%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 26 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQ---------EHPSIPINDAISIITSKNTQQ--FVKDT 111 + V Y+ NITD+DDKII R RQ EHPSI D + T+K + K+ Sbjct: 85 KFDVKYIMNITDVDDKIITRGRQQHLYDQFSAEHPSI---DQELLDTAKAAYEAYIAKNL 141 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 + PTH+ + T + +Y +L G E N++ Sbjct: 142 PLIPVSTPTHELKDT---AEEVYA---AVLDGKPLEGNSK 175 >gi|156063134|ref|XP_001597489.1| hypothetical protein SS1G_01683 [Sclerotinia sclerotiorum 1980] gi|154697019|gb|EDN96757.1| hypothetical protein SS1G_01683 [Sclerotinia sclerotiorum 1980 UF-70] Length = 753 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T +QF++D L L P R T ++P++ ++ II G AYE++ + FD ++ Sbjct: 169 VTQYWEEQFMEDMDALNVLRPDVITRVTTYVPKIATFVEKIIQKGFAYESDGSVYFDIAA 228 Query: 159 IPNYG---------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G S + + + E+ G+ K+ DF LWK+S EP W SPWG Sbjct: 229 FEKAGNPYARLRPESRNDKALQEEGEGSLSKNLGGKRGAGDFALWKKSKAGEPSWPSPWG 288 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS---CCADR--IEKTANI 264 GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS C + N Sbjct: 289 EGRPGWHIECSVMASDVLGSKMDIHSGGIDLAFPHHDNELAQSEAYFCEHEHGPHEWVNY 348 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T + RS +R+ LM + + ++ + Sbjct: 349 FLHMGHLSIAGSKMSKSLKNFQTIRDALAT-DYTPRS-----MRIVFLMGRWNDGVEIS 401 >gi|170782058|ref|YP_001710390.1| cysteinyl-tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] gi|310947179|sp|B0RC50|MSHC_CLAMS RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|169156626|emb|CAQ01778.1| putative cysteinyl-tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] Length = 409 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 105/344 (30%), Positives = 161/344 (46%), Gaps = 37/344 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRYYYGEK 64 +++T + + + +YVCG T YD HIG+A + FD L R L R Y Sbjct: 1 MFDTSAGSVRPAECTGDGRVGLYVCGITPYDATHIGHASTYLAFDTLQRVWLDRGYD--- 57 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD ++ERA + D + ++ + F D L L P Sbjct: 58 -VAYVQNVTDVDDPLLERATAT--GVDWRD----LAAEQVELFRTDMEALRILPPDSYVG 110 Query: 125 ATNHIPQMIYLIQNIILHGHAY---------EANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 T + ++ + ++ G AY ++ FD + G ++ + Sbjct: 111 VTEVVDEVASAVAELVRRGTAYPVATPDAVVAGAQDLYFDVARAGEDGPWALGDESGYDL 170 Query: 176 GTRV---------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHY 226 T PE+ K++P D +LW+ EP W+S GRGRPGWHIEC+ ++ Sbjct: 171 DTMAALSAERGGDPERPGKRDPLDPLLWRAERAGEPAWDSVVGRGRPGWHIECAVIALRK 230 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 L + + GGG DLIFPHHE A A E A ++ H+G + +G KMSKS GN + Sbjct: 231 LDRPVTVQGGGSDLIFPHHEMS-AGHAAALTGEDFACVYAHSGMVAYQGEKMSKSLGNLV 289 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++ L R+ IRLA+L HYR ++T + L E+ Sbjct: 290 LVSR-LRAAGVDPRA-----IRLALLAQHYRADWEWTDELLAES 327 >gi|315055169|ref|XP_003176959.1| cysteinyl-tRNA synthetase [Arthroderma gypseum CBS 118893] gi|311338805|gb|EFQ98007.1| cysteinyl-tRNA synthetase [Arthroderma gypseum CBS 118893] Length = 818 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 140/290 (48%), Gaps = 33/290 (11%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 +T +F++D L L P + T HI ++I ++ II +G AY + + F+ + Sbjct: 255 LTKNYESRFLEDMRCLNVLEPDKLTKVTTHISEIIQFVKTIIGNGFAYSTPDGSVYFNIN 314 Query: 158 SIPNYGSF---------SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 G + + + G+ K + DF+LWK S P EP W SPW Sbjct: 315 KFEESGHYYAKLEPWNRHNKHLQRDGEGSLSKGATSKLSRNDFVLWKASRPGEPSWPSPW 374 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAM+S G DIH GG+DL FPHH+NE+AQS + N ++H Sbjct: 375 GNGRPGWHIECSAMASANFGSQMDIHSGGIDLAFPHHDNELAQSEAFWGGTQWVNYFLHM 434 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 G L+++G KMSKS NF TI E L+ +W + +R+ L++ +RE I+ T + Sbjct: 435 GHLSIQGSKMSKSLKNFTTIREALDRG-----TWTSRNLRIVFLLSGWREGIEITTDMVD 489 Query: 329 EAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 + K L N +ALHKLA E+ N Sbjct: 490 ASRAWEEK------------------LNNFFLKSRNFKALHKLASEAPNN 521 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++N+L R T F DP+ + Y CGPTVYD AH+G+AR + D+L R++R Y+ Sbjct: 24 LRVWNSLTRSKTHFVPADPNGQKVTWYACGPTVYDDAHLGHARNYVTTDILRRIMRDYFK 83 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+D+KII RARQ+H Sbjct: 84 FD-VNFIMNITDVDNKIIIRARQQH 107 >gi|291319975|ref|YP_003515233.1| cysteinyl tRNA synthetase [Mycoplasma agalactiae] gi|290752304|emb|CBH40275.1| Cysteinyl tRNA synthetase (Cysteine tRNA ligase) [Mycoplasma agalactiae] Length = 413 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 110/322 (34%), Positives = 161/322 (50%), Gaps = 31/322 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVY+ HIGN RP+I FD + + R K +V NITD+DDKII +A Q Sbjct: 2 LKIYVCGPTVYNEPHIGNLRPIITFDFMLKAYREL--NKEFKFVHNITDVDDKIINKAIQ 59 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ----PRATNHIPQMIYLIQNIIL 141 + + S+ + K RL + + + T +I + ++ + Sbjct: 60 ----------MDVKESEVASFYFKSYQRLLRMLNVNTISKIEKVTKNINVINKYVEKLYQ 109 Query: 142 HGHAY-EANNEIIFDT-SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 +AY +AN + FD + NYG S + ID K K DF LWK ST Sbjct: 110 TENAYKDANGNVWFDVLKNKSNYGLVSNQNIDNMVFDENSLLKRFK---GDFALWK-STA 165 Query: 200 MEPGWESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 + + S +G GRPGWH ECSA+ H+ DIHGGG+DL FPHHENE Q + Sbjct: 166 VGIKFRSSFGMGRPGWHTECSALIDKHFGSDGVDIHGGGMDLTFPHHENENIQHYALYQ- 224 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 ++ A WI G LNL+G KMSKS GN I + + K+G A +++L Sbjct: 225 KQLAKEWIRCGQLNLDGEKMSKSVGNVILAEDFIN--KYG-----AAILKLIFFNAKVSA 277 Query: 319 PIDFTVQRLTEAEILLSKWPQT 340 I+ T + + + + +K+ + Sbjct: 278 SINITSELIENMKAIENKYKKV 299 >gi|326469078|gb|EGD93087.1| cysteinyl-tRNA synthetase [Trichophyton tonsurans CBS 112818] Length = 804 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 23/241 (9%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTS 157 +T + +F++D L L P R T +P+++ ++ II H Y + + FD Sbjct: 243 LTKEYEDRFMQDVRDLNVLDPDEITRVTEFMPEIVSFVERIIEHKFGYVTPDGSVYFDIE 302 Query: 158 SIPNYGS-------FSRRKIDEQKMG--TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + G+ ++R + Q G + ++ KK+ ADF LWK S EP W SPW Sbjct: 303 NFEAAGNSYARLEPWNRNDANRQSEGEGSLSNKQAKKKSSADFALWKASKAGEPSWPSPW 362 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ------SCCADRIEKTA 262 G GRPGWHIECSAM+S LGK DIH GG+DL FPHH+NEIAQ S C+ + Sbjct: 363 GNGRPGWHIECSAMASSRLGKQMDIHSGGIDLAFPHHDNEIAQSEAYWSSTCSHV--QWV 420 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 N +IH G L+++G KMSKS NF TI + L + RS +R+ L+ +R+ I+ Sbjct: 421 NYFIHMGHLSIQGSKMSKSLKNFTTIRDALRRGDWTPRS-----LRIVFLLGGWRDGIEI 475 Query: 323 T 323 T Sbjct: 476 T 476 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 23/160 (14%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L R T F +DP + Y CGPTVYD AH+G+AR + D++ R+LR Y+ Sbjct: 26 LKIWNSLTRSKTPFVPLDPEGKKVTWYACGPTVYDDAHLGHARNYVSADIVRRILRDYF- 84 Query: 63 EKCVTYVRNITDIDDKIIERARQ---------EHPSIPINDAISIITSKNTQQ--FVKDT 111 + V Y+ NITD+DDKII R RQ EHPSI D + T+K + K+ Sbjct: 85 KFDVKYIMNITDVDDKIITRGRQQHLYDQFSAEHPSI---DQELLDTAKAAYEAYIAKNL 141 Query: 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE 151 + PTH+ + T + +Y +L G E N++ Sbjct: 142 PLIPVSTPTHELKDT---AEEVYA---AVLDGKPLEGNSK 175 >gi|312220209|emb|CBY00150.1| similar to cysteinyl-tRNA synthetase [Leptosphaeria maculans] Length = 803 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 130/243 (53%), Gaps = 25/243 (10%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTS 157 +T K +F +D L L P R T + Q++ ++ I+ +G AY+ ++ + FD Sbjct: 239 LTQKYEARFNEDMRSLNVLDPHVVTRVTEYGDQIVTFVEKIVDNGFAYKTSDGSVYFDID 298 Query: 158 S---IP----------NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 S IP N G + E + T+ + K++ ADF LWK S P EP W Sbjct: 299 SFEKIPGNHYARLEPWNRGDKGLQADGEGALSTQ--KTSEKRSDADFALWKSSKPGEPAW 356 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEK 260 SPWG GRPGWHIECS M+S LGK D+H GG+DL FPHH+NE+AQS D + Sbjct: 357 NSPWGPGRPGWHIECSVMASDVLGKQMDVHSGGIDLCFPHHDNELAQSEAHWSGKDGGHQ 416 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 N ++H G L++ G KMSKS NF TI E L K + RS +R+ L+ + + I Sbjct: 417 WVNYFLHMGHLSISGSKMSKSLKNFTTIREALARKDWNARS-----LRIIFLLGGWHDGI 471 Query: 321 DFT 323 + T Sbjct: 472 EIT 474 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 3/86 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K+K++N+L R EF IDP ++ Y CGPTVYD AH+G+AR + D+L R+L Y+ Sbjct: 22 KLKVWNSLTRSKNEFAPIDPQGKLVKWYNCGPTVYDDAHLGHARNYVTIDILRRILSDYF 81 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 K + +V+NITD+DDKII R RQ+H Sbjct: 82 EYKLL-FVQNITDVDDKIILRGRQQH 106 >gi|291234575|ref|XP_002737225.1| PREDICTED: cysteinyl-tRNA synthetase-like [Saccoglossus kowalevskii] Length = 739 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 137/254 (53%), Gaps = 26/254 (10%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEI 152 N S++ +++ +D + L R +++IP+++ ++ II +G+ Y +N + Sbjct: 203 NSIFSLLPKYWEEEYHRDMASINVLPADVLTRVSDYIPEVVEYVKKIIDNGYGYVSNGSV 262 Query: 153 IFDTSSIPNYGSFSRRKIDEQKMGT----------------RVPEKYHKKNPADFILWKR 196 F S+ N + S K+ + +G R+ EK K+ DF +WK+ Sbjct: 263 YFSVSTFDNDPNHSYAKLVPEAVGDCKALEEGEGDLSISQDRLDEK---KSQVDFAVWKK 319 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 S P EP W+SPWG+GRPGWHIECS M+S LG+ DIH GG DL FPHH+NE+AQ+ Sbjct: 320 SKPGEPAWDSPWGKGRPGWHIECSVMASCILGESLDIHTGGFDLRFPHHDNELAQAEAYY 379 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 + ++H+G L ++G KMSKS NFITI + LE + +RL L+ + Sbjct: 380 GNDHWVRYFLHSGHLTIQGCKMSKSLKNFITIKDALENH-------TSRQLRLVFLLHSW 432 Query: 317 REPIDFTVQRLTEA 330 ++ +D++ + A Sbjct: 433 KDTLDYSDNTMESA 446 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F + + Y CGPTVYD +H+G+AR + +FD+L R+L Y+ Sbjct: 24 QLYLYNSLTRQRELFIPQNGKQVLWYSCGPTVYDASHMGHARSLHIFDILRRILSEYFNY 83 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 84 D-VVYCMNITDIDDKIIRRARQNY 106 >gi|115433550|ref|XP_001216912.1| hypothetical protein ATEG_08291 [Aspergillus terreus NIH2624] gi|114189764|gb|EAU31464.1| hypothetical protein ATEG_08291 [Aspergillus terreus NIH2624] Length = 811 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 133/251 (52%), Gaps = 22/251 (8%) Query: 89 SIPIND--AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 SI ND + +T K ++F +D L L P R T ++PQ++ I+ +I G AY Sbjct: 229 SIDSNDHSIFTRLTEKFEKRFFEDMNSLNVLYPDVLTRVTEYVPQVVSFIEKVIASGFAY 288 Query: 147 EA-NNEIIFDTSSIPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKR 196 + + FD + G +++R + + G+ + K++ +DF LWK Sbjct: 289 ATPDGSVYFDIEAFEKAGHNYARLEPWNRNDKSLLADGEGSLTNKTTVKRSESDFALWKA 348 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS---- 252 S P EP W SPW GRPGWHIECS M+S LGK DIH GG DL FPHH+NE+AQS Sbjct: 349 SKPGEPSWPSPWAPGRPGWHIECSVMASDVLGKAIDIHSGGADLRFPHHDNELAQSEAYW 408 Query: 253 CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 R++ N +IH G L+++G KMSKS NF TI L ++ RS +R+ L Sbjct: 409 STGPRVQ-WVNYFIHTGHLSIQGMKMSKSLKNFTTIRAALSQGQWTSRS-----LRICFL 462 Query: 313 MTHYREPIDFT 323 + + ++ T Sbjct: 463 LGPWEAGVEVT 473 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R+ ++ IDP Y CGPTVYD AH+G+AR + D+L R+L+ Y+G Sbjct: 25 LKIYNSLTRRKDDYVPIDPEGKATTWYTCGPTVYDDAHMGHARNYVSTDILRRILKDYFG 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V YV NITDIDDKII R RQ++ Sbjct: 85 YQ-VKYVMNITDIDDKIILRGRQQY 108 >gi|164658560|ref|XP_001730405.1| hypothetical protein MGL_2200 [Malassezia globosa CBS 7966] gi|159104301|gb|EDP43191.1| hypothetical protein MGL_2200 [Malassezia globosa CBS 7966] Length = 823 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 128/246 (52%), Gaps = 39/246 (15%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY--EANNE---IIFDTSSIPN 161 F D RL PT R + ++P+++ I+ I+ +G AY +A+ E + F TS Sbjct: 260 FFHDMKRLHVEPPTILTRVSEYVPEIVQFIERILQNGFAYVDDASAESKNVWFATSQFDG 319 Query: 162 YG-------------------------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR 196 S R++ E+ G + K+N ADF LWKR Sbjct: 320 SACVAGALAENQPEAREHHFYAKLAPWSKGNRELLEEGEGALAAKG--KRNAADFALWKR 377 Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256 + P EP W SPWG GRPGWHIECS M+S LG DIH GG+DL+FPHH+NE+AQS Sbjct: 378 AKPGEPAWPSPWGPGRPGWHIECSVMASKVLGSQIDIHSGGIDLMFPHHDNELAQSEAFH 437 Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 + N ++H G L++EG KMSKS NFI+I+E L + A +RLA LM + Sbjct: 438 GCPQWINYFLHTGHLHIEGLKMSKSLKNFISIDEALA-------RYTARQLRLAFLMHPW 490 Query: 317 REPIDF 322 +DF Sbjct: 491 HAKMDF 496 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 1/83 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R F + Y CGPTVYD +H+G+AR + DV+ R++R Y G Sbjct: 23 ELHVYNSLTRSKERFVPKRGRLVTWYNCGPTVYDASHMGHARNYVTQDVIRRIMRDYLGY 82 Query: 64 KCVTYVRNITDIDDKIIERARQE 86 V +V N+TDIDDKII RARQE Sbjct: 83 D-VNFVMNVTDIDDKIIMRARQE 104 >gi|323651396|gb|ADX97544.1| cysteinyl-tRNA synthetase [Moumou virus] Length = 417 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 166/323 (51%), Gaps = 43/323 (13%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I+MYVCGPTVY+ AHIG+AR ++ D++ + + + + V NITDIDDKII+ + Sbjct: 7 IKMYVCGPTVYNDAHIGHARVYMMVDLINKTMNRFLNRNTLL-VMNITDIDDKIIKAS-- 63 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E I + ++ K +F ++L P R + I +I IQNII + A Sbjct: 64 EINGISWQE----LSKKYEDKFFTSMSQLNIDLPDIIIRVSESIIDIIEYIQNIINNNFA 119 Query: 146 YEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTR-------VPEKYHKKNPADFILWKRS 197 Y ++ + FDT S N G +IDE+++ + +K HKK DF LWK Sbjct: 120 YITDDGSVYFDTISYINAGYEFSFEIDEEEISYESQISNDIINQKKHKK---DFALWKSR 176 Query: 198 TPMEPGWESPWG--------RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEI 249 T G+++ + G PGWHIECS M +G DIH GG+DL FPHH NE Sbjct: 177 TKNNVGFDANFSFNGNLIKTYGIPGWHIECSTMIHKTIGNHLDIHFGGIDLKFPHHHNEN 236 Query: 250 AQSCC--------ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 Q+C D+ ++ N ++H G L ++G+KMSKS NF TI+++L+ Sbjct: 237 LQACAYYHPKYHPNDKTKEWTNKFMHIGHLCIKGKKMSKSLKNFSTIDDILQDLTPNEFR 296 Query: 302 WPAPVIRLAMLMTH-YREPIDFT 323 W M M H ++ P++F Sbjct: 297 W--------MFMQHKWQNPMEFN 311 >gi|256087600|ref|XP_002579954.1| cysteinyl-tRNA synthetase [Schistosoma mansoni] gi|238665453|emb|CAZ36193.1| cysteinyl-tRNA synthetase, putative [Schistosoma mansoni] Length = 843 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 25/240 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-- 161 ++++ D L + P+ R T +I +I ++ II +G AY + + FDT+ + Sbjct: 236 KEYLVDMECLNIIPPSVLVRVTEYIDPIIKYVKQIIDNGFAYVVPSGSVYFDTNRFASSP 295 Query: 162 -----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR 210 YG S+ + E ++ KK+ DF LWK S P EP W SPWG+ Sbjct: 296 MHFYAKLVPTAYGDTSQLESGEGELCI----TGEKKSSNDFALWKASKPGEPSWPSPWGK 351 Query: 211 GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS N ++H+G Sbjct: 352 GRPGWHIECSVMASDILGDTLDIHSGGVDLKFPHHDNELAQSEAYFGHSHWVNYFLHSGH 411 Query: 271 LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 L + G KMSKS NFITI + L+T + IRL L+ +R+ +D++V L EA Sbjct: 412 LTISGCKMSKSLKNFITIRDALKTHT-------SRQIRLIFLLHSWRDTMDYSVDTLAEA 464 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 1/81 (1%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+L + F D +++ Y CGPTVYD +H+G+AR + FDV+ R+L Y+ K V Sbjct: 55 LYNSLTSQKDLFIPQDGRHVKWYTCGPTVYDVSHLGHARTYVAFDVIRRVLMDYFNFK-V 113 Query: 67 TYVRNITDIDDKIIERARQEH 87 TYV NITDIDDKII+RARQ H Sbjct: 114 TYVLNITDIDDKIIKRARQNH 134 >gi|256087602|ref|XP_002579955.1| cysteinyl-tRNA synthetase [Schistosoma mansoni] gi|238665454|emb|CAZ36194.1| cysteinyl-tRNA synthetase, putative [Schistosoma mansoni] Length = 814 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 25/240 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-- 161 ++++ D L + P+ R T +I +I ++ II +G AY + + FDT+ + Sbjct: 207 KEYLVDMECLNIIPPSVLVRVTEYIDPIIKYVKQIIDNGFAYVVPSGSVYFDTNRFASSP 266 Query: 162 -----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR 210 YG S+ + E ++ KK+ DF LWK S P EP W SPWG+ Sbjct: 267 MHFYAKLVPTAYGDTSQLESGEGELCI----TGEKKSSNDFALWKASKPGEPSWPSPWGK 322 Query: 211 GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS N ++H+G Sbjct: 323 GRPGWHIECSVMASDILGDTLDIHSGGVDLKFPHHDNELAQSEAYFGHSHWVNYFLHSGH 382 Query: 271 LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 L + G KMSKS NFITI + L+T + IRL L+ +R+ +D++V L EA Sbjct: 383 LTISGCKMSKSLKNFITIRDALKTHT-------SRQIRLIFLLHSWRDTMDYSVDTLAEA 435 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 1/81 (1%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+L + F D +++ Y CGPTVYD +H+G+AR + FDV+ R+L Y+ K V Sbjct: 26 LYNSLTSQKDLFIPQDGRHVKWYTCGPTVYDVSHLGHARTYVAFDVIRRVLMDYFNFK-V 84 Query: 67 TYVRNITDIDDKIIERARQEH 87 TYV NITDIDDKII+RARQ H Sbjct: 85 TYVLNITDIDDKIIKRARQNH 105 >gi|154312989|ref|XP_001555821.1| hypothetical protein BC1G_05496 [Botryotinia fuckeliana B05.10] gi|150849581|gb|EDN24774.1| hypothetical protein BC1G_05496 [Botryotinia fuckeliana B05.10] Length = 796 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 20/232 (8%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYG-- 163 QF++D L + P R T ++P++ ++ II G AYE++ + FD ++ G Sbjct: 219 QFMEDMDALNVMRPDVITRVTTYVPKIAIFVKKIIDKGFAYESDGSVYFDIAAFEKAGNP 278 Query: 164 -------SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWH 216 S + + + E+ G+ K+ DF LWK+S EP W SPWG GRPGWH Sbjct: 279 YARLRPESRNDKALQEEGEGSLSKNLGGKRGAGDFALWKKSKAGEPSWPSPWGEGRPGWH 338 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADR-IEKTANIWIHNGFL 271 IECS M+S LG DIH GG+DL FPHH+NE+AQS C ++ + N ++H G L Sbjct: 339 IECSVMASDVLGSKMDIHSGGIDLAFPHHDNELAQSEAYFCEHEQGPHEWVNYFLHMGHL 398 Query: 272 NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++ G KMSKS NF TI + L T + RS +R+ LM + + ++ + Sbjct: 399 SIAGSKMSKSLKNFQTIRDAL-TTDYTPRS-----MRIVFLMGRWNDGVEIS 444 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 58/84 (69%), Gaps = 2/84 (2%) Query: 4 KIKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++K++N+L+ F I+ + YVCGPTVYD +H+G+AR + D++ R+++ Y+G Sbjct: 3 QLKVHNSLKPGGPVPFVPIEKGKVSWYVCGPTVYDHSHLGHARNYVSTDIIRRIMKDYFG 62 Query: 63 EKCVTYVRNITDIDDKIIERARQE 86 + +V NITD+DDKII +AR++ Sbjct: 63 FD-LNFVMNITDVDDKIILKARRQ 85 >gi|168027561|ref|XP_001766298.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682512|gb|EDQ68930.1| predicted protein [Physcomitrella patens subsp. patens] Length = 736 Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 123/232 (53%), Gaps = 14/232 (6%) Query: 106 QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---- 161 +F D + L C P R T ++ +++ ++ I+ + AY AN + FDT + Sbjct: 194 EFWDDMSALGCGYPDVLVRVTEYMDKIVEYVEVIVANKFAYVANESVYFDTRAFREAGHR 253 Query: 162 YGSFSRRKIDEQKMGTRVPEKY---HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIE 218 YG + + + + + K+ DF LWK+S P EP W+SPWG GRPGWHIE Sbjct: 254 YGKLNPAAVGSSMLASESESNFDTSEKRTSCDFALWKKSKPGEPSWDSPWGPGRPGWHIE 313 Query: 219 CSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKM 278 CSAM+S LG DIH GG DL FPHH+NE+AQS + + H+G L+++G KM Sbjct: 314 CSAMASDILGDSIDIHTGGHDLQFPHHDNELAQSEAYFHCHEWVRYFFHSGHLSIDGLKM 373 Query: 279 SKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 SKS NFITI L + A +R ++ + + I+F+ + EA Sbjct: 374 SKSLKNFITIKTALTM-------YTARQLRTLFVIQSWDKSINFSTTVVNEA 418 Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/22 (72%), Positives = 18/22 (81%) Query: 66 VTYVRNITDIDDKIIERARQEH 87 V YV NITD+DDKII RAR+ H Sbjct: 84 VKYVMNITDVDDKIINRARRNH 105 >gi|325963276|ref|YP_004241182.1| cysteinyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] gi|323469363|gb|ADX73048.1| cysteinyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] Length = 425 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 122/401 (30%), Positives = 191/401 (47%), Gaps = 45/401 (11%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 I++Y+T R++ Q PS MYVCG T YD H+G+A + FD+L R R E Sbjct: 19 IRLYDTAAGREVALEQENHPS---MYVCGITPYDATHMGHASSYVAFDLLNRAWRDAGQE 75 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YV+N+TD+DD ++ERA + D + + + F D L L P H Sbjct: 76 --VAYVQNVTDVDDPLLERATAT--GVDWRD----LAAGQIELFQTDMEALNVLPPDHYV 127 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDT------SSIPNYGSFSR-RK 169 A I ++ ++ ++ G AY E + ++ +D S P+ + Sbjct: 128 GAVESIGLIVPEVERLVSLGLAYKVDGTNGEPDGDVYYDVEAAGKQSVAPDAWTLGCISG 187 Query: 170 IDEQKMGTRV------PEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGWHIECSAM 222 ++E +M P + K+ D +LW+ EP W G GRPGWHIEC+ + Sbjct: 188 LNESEMLELFAERGGDPGRAGKRQALDPLLWRVEREGEPSWPGGSLGPGRPGWHIECTVI 247 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 + YL + F + GGG DLIFPHHE + + A + H G + L+G KMSKS Sbjct: 248 AQKYLPQPFTVQGGGSDLIFPHHEMGAGHAYSLAGV-PLARHYAHAGMVGLDGEKMSKSK 306 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-- 340 GN + +++L + PA IRL +L HYR +T +A+ +L+ W Q Sbjct: 307 GNLVLVSKLRAAGED-----PA-AIRLGILAHHYRSDWSWTDHGFEDAKAILASWRQALP 360 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 + S + A+ AL DLN +A+ A+++ A ++ + Sbjct: 361 HAPAGSAAPLVAAMREALAADLNAPAAVAAVNRWAEQALSD 401 >gi|156405455|ref|XP_001640747.1| predicted protein [Nematostella vectensis] gi|156227883|gb|EDO48684.1| predicted protein [Nematostella vectensis] Length = 634 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 130/237 (54%), Gaps = 17/237 (7%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGS 164 Q++ KD L L T ++P+++ I+ +I +G+AYE+N + FDT + Sbjct: 209 QEYHKDMAALNVLPADILTNITEYVPEVVTFIEKVIANGYAYESNGSVYFDTIKFGSSEK 268 Query: 165 FSRRKIDEQKMGT--RVPEKY--------HKKNPADFILWKRSTPMEPGWESPWGRGRPG 214 S ++ + +G + E K++ DF LWK S P EP WESPWG+GRPG Sbjct: 269 HSYARLVPEAVGDLDALAEGEGELSQNLGEKRSERDFALWKASKPGEPSWESPWGKGRPG 328 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WH+ECS M+ LG DI GG++L FP H+NE+AQS + + N ++H G L +E Sbjct: 329 WHVECSVMARDGLGSKIDIPTGGVNLKFPPHDNELAQSEAHFCVSQWVNYFLHAGHLTIE 388 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 G KMSKS NFITI + L K+ R IRLA L+ + +D++ + EAE Sbjct: 389 GCKMSKSLKNFITIKQAL--KRNSSRQ-----IRLAFLLHTWNATLDYSQNVIREAE 438 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YN+L R+ F + + Y CGPTVYD +H+G+AR I FD++ R+L+ Y+ Sbjct: 17 ELKLYNSLTREKNLFIPSNGRRVTWYSCGPTVYDASHMGHARSYITFDIVRRVLQSYFNY 76 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V V N+TDIDDKII RAR+ H Sbjct: 77 D-VFCVMNVTDIDDKIIHRARRNH 99 >gi|332670290|ref|YP_004453298.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Cellulomonas fimi ATCC 484] gi|332339328|gb|AEE45911.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Cellulomonas fimi ATCC 484] Length = 418 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/382 (30%), Positives = 182/382 (47%), Gaps = 41/382 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 +YVCG T YD H+G+A + FDVL R R + V Y N+TD+DD ++ERA Sbjct: 40 LYVCGITPYDATHLGHAATYVAFDVLGRAWRDA--GQQVRYASNVTDVDDPLLERATAT- 96 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY- 146 + D + ++ + +D T L + P +P ++ + ++ G AY Sbjct: 97 -GVEWQD----LAAEQVALYAEDMTALGVVPPDAWTGVVESVPAVVDAVAALVAAGAAYT 151 Query: 147 --------EANNEIIFDTSSIPNYGSFSRR------KIDEQKMGTRVPEKYHKKNPADFI 192 + ++ D S+ +G+ + + ++ G P + K++P D + Sbjct: 152 VDTPDALGDGPGDVYADLSADGAFGTVAGLDPATMLALSAERGGD--PGRPGKRSPLDPL 209 Query: 193 LWKRSTPMEPGWES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 LW+R EP W+ GRGRPGWHIEC+ ++ LG FD+ GGG DL FPHHE + Sbjct: 210 LWRRERAGEPAWDGGTLGRGRPGWHIECAVIARDSLGLPFDVEGGGSDLQFPHHEMSTSH 269 Query: 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV-IRLA 310 + D A + +H G + L+G KMSKS GN + ++ L E P+ IRLA Sbjct: 270 ARLLD-AGHGARVHVHAGMVGLDGEKMSKSRGNLVLVSRLREDGVD-------PMAIRLA 321 Query: 311 MLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-----PAVLSALYNDLNTVSAI 365 +L Y E D+T L EA L W + + G D A+ +A+ +DL+T A+ Sbjct: 322 ILAHRYSEDWDWTDAGLKEAVERLGGWRRALSGNGGPDATATIAALRAAVADDLDTPRAL 381 Query: 366 QALHKLARESTKNHDLLPIFNA 387 + A + + D P+ A Sbjct: 382 DVVDDWALAALRG-DAEPVEGA 402 >gi|325973156|ref|YP_004250220.1| cysteinyl-tRNA synthetase [Mycoplasma suis str. Illinois] gi|323651758|gb|ADX97840.1| cysteinyl-tRNA synthetase [Mycoplasma suis str. Illinois] Length = 435 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 195/454 (42%), Gaps = 79/454 (17%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y+CGPT+Y++ H+GN RP++VFD L R + + YV+N+TDID+KII +A+ Sbjct: 22 ITIYLCGPTLYNYLHLGNLRPIVVFDFLIRYFKII--NQPYKYVQNLTDIDEKIILKAKH 79 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E N + I + + F L + P P + HI + + I +++ G A Sbjct: 80 E------NKTVKEIVDQYAESFFNILKNLNIVWPDQLPTVSTHIKNIQFHIDSLLKQGKA 133 Query: 146 -YEANNEII--FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEP 202 ++ + I +T FS ++DE+ + F LWK + Sbjct: 134 VWDKKTQTIRFLNTGKEKGLNYFSGNEVDEED--------------SCFALWKENNHTSY 179 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 WESPW G PGWH+EC AM IHGGG+DL FPHHENE C A Sbjct: 180 SWESPWFPGIPGWHLECFAMIEDNFSLPITIHGGGVDLKFPHHENE-NLLCRFWHNHDLA 238 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +W+H G + E K+SKS+ + + E E SW +R + Y +P Sbjct: 239 KVWVHVGQVLNEAGKLSKSSNYSLAVEECAEQ-----YSW--NFLRYIFMKVRYNKPFMI 291 Query: 323 TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA------------------------LYND 358 + L+ S+W T+ + +L+A L ND Sbjct: 292 NKEALSSY---WSEWKSYLTALNYAEITLLNAKHIFFCPEKELRKIEKPDETIVKHLEND 348 Query: 359 LN---TVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEVCKEHLNKNISIAIEKLVQ 414 LN +S ++ L K S K D I F + +EV + +E+L + Sbjct: 349 LNLPELLSWLEDLKKTLLNSIKKSDYDNILFYWKKLLTSLEV--------LGFTLERLSR 400 Query: 415 ERL-------ILLKMKKFSSADYIRKQLESKGFI 441 E + LL K + AD +R +L KG + Sbjct: 401 ENIDEAERWFDLLSQKNYEEADKLRLRLTEKGIL 434 >gi|325989599|ref|YP_004249298.1| Cysteinyl-tRNA synthetase [Mycoplasma suis KI3806] gi|323574684|emb|CBZ40340.1| Cysteinyl-tRNA synthetase [Mycoplasma suis] Length = 435 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 195/454 (42%), Gaps = 79/454 (17%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I +Y+CGPT+Y++ H+GN RP++VFD L R + + YV+N+TDID+KII +A+ Sbjct: 22 ITIYLCGPTLYNYLHLGNLRPIVVFDFLIRYFKII--NQPYKYVQNLTDIDEKIILKAKH 79 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 E N + I + + F L + P P + HI + + I +++ G A Sbjct: 80 E------NKTVKEIVDQYAESFFNILKNLNIVWPDQLPAVSTHIKNIQFHIDSLLKQGKA 133 Query: 146 -YEANNEII--FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEP 202 ++ + I +T FS ++DE+ + F LWK + Sbjct: 134 VWDKKTQTIRFLNTGKEKGLNYFSGNEVDEED--------------SCFALWKENNHTSY 179 Query: 203 GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 WESPW G PGWH+EC AM IHGGG+DL FPHHENE C A Sbjct: 180 SWESPWFPGIPGWHLECFAMIEDNFSLPITIHGGGVDLKFPHHENE-NLLCRFWHNHDLA 238 Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 +W+H G + E K+SKS+ + + E E SW +R + Y +P Sbjct: 239 KVWVHVGQVLNEAGKLSKSSNYSLAVEECAEQ-----YSW--NFLRYIFMKVRYNKPFMI 291 Query: 323 TVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA------------------------LYND 358 + L+ S+W T+ + +L+A L ND Sbjct: 292 NKEALSSY---WSEWKSYLTALNYAEITLLNAKHIFFCPEKELRKIEKPDETIVKHLEND 348 Query: 359 LN---TVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEVCKEHLNKNISIAIEKLVQ 414 LN +S ++ L K S K D I F + +EV + +E+L + Sbjct: 349 LNLPELLSWLEDLKKTLLNSIKKSDYDNILFYWKKLLTSLEV--------LGFTLERLSR 400 Query: 415 ERL-------ILLKMKKFSSADYIRKQLESKGFI 441 E + LL K + AD +R +L KG + Sbjct: 401 ENIDEAERWFDLLSQKNYEEADKLRLRLTEKGIL 434 >gi|284990719|ref|YP_003409273.1| cysteine--tRNA ligase [Geodermatophilus obscurus DSM 43160] gi|284063964|gb|ADB74902.1| Cysteine--tRNA ligase [Geodermatophilus obscurus DSM 43160] Length = 391 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/350 (31%), Positives = 167/350 (47%), Gaps = 25/350 (7%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 S R+YVCG T YD H+G+A + DVL +LR G VT RN+TD+DD + A Sbjct: 40 SPARVYVCGITPYDVTHLGHAATFVWADVLGSVLRLA-GADVVTS-RNVTDVDDVLTRAA 97 Query: 84 --RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL 141 R H F +D L PTH PRA +H+ + L ++ Sbjct: 98 DARGRH--------FDEFALGQEFAFEQDLRALGVRPPTHVPRARHHVTHVQQLAAALLQ 149 Query: 142 HGHAYEANNEIIFDTSSIPNYGSFSRRKIDE--QKMGTRVPEKYHKKNPADFILWKRSTP 199 G AYE + F + + + E + G P+ +++P D +W+ S Sbjct: 150 AGRAYEREGHVFFRGAGVVGASGLDAGRARELAAEFGDD-PDDPLREDPFDVPVWRPSGE 208 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 +P W SPWG GRPGWH EC+AM++ LG+ D+ GG DL FPHH ++ A + A + Sbjct: 209 RDPAWPSPWGWGRPGWHAECAAMATATLGRGVDVLVGGADLAFPHHAHQAAMAEAASGVA 268 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A +H G ++ +G KM+KS GN +++LL R PV+RL +L + +P Sbjct: 269 PFARSRVHVGAVSQDGAKMAKSTGNLTLVSDLL-------RGTTGPVLRLLVLDRPWSQP 321 Query: 320 IDFTVQRLTEAEILLSKWPQTSTSKG---IIDPAVLSALYNDLNTVSAIQ 366 ++ + L A L + + G AV+ L +DL+ +A+ Sbjct: 322 WEYRPELLETASARLDELFAAAGRPGSSPAASRAVVDRLLDDLDVSAALD 371 >gi|148377308|ref|YP_001256184.1| cysteinyl-tRNA synthetase (cysteine-trnaligase) [Mycoplasma agalactiae PG2] gi|148291354|emb|CAL58737.1| Cysteinyl tRNA synthetase (Cysteine tRNAligase) [Mycoplasma agalactiae PG2] Length = 413 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 109/322 (33%), Positives = 160/322 (49%), Gaps = 31/322 (9%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 +++YVCGPTVY+ HIGN RP+I FD + + R K +V NITD+DDKII +A Q Sbjct: 2 LKIYVCGPTVYNEPHIGNLRPIITFDFMLKAYREL--NKEFKFVHNITDVDDKIINKAIQ 59 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ----PRATNHIPQMIYLIQNIIL 141 + + S+ + K RL + + + T +I + ++ + Sbjct: 60 ----------MDVKESEVASFYFKSYQRLLRMLNVNTISKIEKVTKNINVINKYVEKLYQ 109 Query: 142 HGHAY-EANNEIIFDT-SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 +AY +AN + FD + NYG S + ID K K DF LWK ST Sbjct: 110 TENAYKDANGNVWFDVLRNKGNYGLVSNQNIDNMVFDENSLLKRFK---GDFALWK-STA 165 Query: 200 MEPGWESPWGRGRPGWHIECSAM-SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 + + S +G GRPGWH ECSA+ H+ DIHGGG+DL FPHHENE Q + Sbjct: 166 VGIKFRSSFGMGRPGWHTECSALIDKHFGSDGVDIHGGGMDLTFPHHENENIQHYALYQ- 224 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 ++ A WI G LNL+ KMSKS GN I + + K+G A +++L Sbjct: 225 KQLAKEWIRCGQLNLDCEKMSKSVGNVILAEDFIN--KYG-----AAILKLIFFNAKVSA 277 Query: 319 PIDFTVQRLTEAEILLSKWPQT 340 I+ T + + + + +K+ + Sbjct: 278 SINITSELIENMKAIENKYKKV 299 >gi|189206896|ref|XP_001939782.1| cysteinyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975875|gb|EDU42501.1| cysteinyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 797 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 127/242 (52%), Gaps = 19/242 (7%) Query: 96 ISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIF 154 + +T K +F +D L L P R T + +++ + II +G AY ++ + F Sbjct: 235 FTTLTKKYEARFNEDMQNLNVLEPDVVTRVTEYGNEIVSFVDKIIKNGMAYSTSDGSVYF 294 Query: 155 DTSSIPNYGS-------FSRRKIDEQKMGTRV---PEKYHKKNPADFILWKRSTPMEPGW 204 D + G+ ++R + Q G + K+N +DF LWK S P EP W Sbjct: 295 DIENFEKEGNHYARLEPWNRGDTNLQADGEGALSSVKTSEKRNDSDFALWKSSKPGEPAW 354 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC---ADRIEKT 261 SPWG GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS D + Sbjct: 355 NSPWGPGRPGWHIECSVMASAVLGEQMDIHSGGIDLCFPHHDNELAQSEAYWQKDGGAQW 414 Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 N ++H G L++ G KMSKS NF TI E L + RS +R+ L+ + + I+ Sbjct: 415 VNYFLHMGHLSISGSKMSKSLKNFTTIREALSRGDWNARS-----LRIIFLLGGWHDGIE 469 Query: 322 FT 323 T Sbjct: 470 IT 471 Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 3/86 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K+K++N+L R +F IDP ++ Y CGPTVYD AH+G+AR + D+L R+L +YY Sbjct: 21 KLKVWNSLTRTKNDFIPIDPEGKEVKWYSCGPTVYDDAHLGHARNYVTNDILRRILAHYY 80 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G V +V+NITD+DDKII R RQ+H Sbjct: 81 GYN-VKFVQNITDVDDKIILRGRQQH 105 >gi|302410221|ref|XP_003002944.1| cysteinyl-tRNA synthetase [Verticillium albo-atrum VaMs.102] gi|261357968|gb|EEY20396.1| cysteinyl-tRNA synthetase [Verticillium albo-atrum VaMs.102] Length = 792 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 126/239 (52%), Gaps = 20/239 (8%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 +T Q F D L L P R T ++PQ+ + I+ G AYE++ + FD ++ Sbjct: 200 LTQSMEQLFFDDMDALNVLRPDVITRVTEYVPQIADFVARIVDKGFAYESDGSVYFDITA 259 Query: 159 IPNYG-SFSR--------RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG 209 G +++R + + E G K++ DF LWK+S EP W S WG Sbjct: 260 FEKAGNTYARLRPGNRNDKSLQEDGEGALSKNLGEKRSDGDFALWKKSKEGEPYWPSRWG 319 Query: 210 RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKT-ANI 264 GRPGWHIECS M+S LG DIH GG+DL FPHH+NE+AQS C ++ E T Sbjct: 320 NGRPGWHIECSVMASDILGAQMDIHSGGVDLAFPHHDNELAQSEAYYCEQEKGEHTWVRH 379 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 ++H G L++ G KMSKS NF TI + L T + RS +R+ L+ + + ++ + Sbjct: 380 FLHMGHLSISGSKMSKSLKNFQTIQDALAT-NYTSRS-----MRVVFLLGKWNDGVEIS 432 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Query: 5 IKIYNTLE-RKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +K++N+L + F I+ + Y CGPTVYD +H+G+AR + D++ R++ +Y+ Sbjct: 4 LKVHNSLSPGQPVPFDPIEKGKVSWYACGPTVYDKSHLGHARNYVSTDIIRRIMMHYF 61 >gi|223994283|ref|XP_002286825.1| cysteinyl-trna synthetase [Thalassiosira pseudonana CCMP1335] gi|220978140|gb|EED96466.1| cysteinyl-trna synthetase [Thalassiosira pseudonana CCMP1335] Length = 807 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 24/242 (9%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGS 164 ++F++D L P R T ++P+++ ++ II G AY++N + + G Sbjct: 252 REFMEDMAALGIREPDILTRVTEYVPKIVAFVETIISKGLAYKSNGSVYLSLDAFQEAG- 310 Query: 165 FSRRKIDEQKMG----------------TRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 + RK++ G V K+NP DF LWK S EP WESP+ Sbjct: 311 HNYRKLNPAGPGGAATTAAEMAEGEGALGGVGGDSEKRNPNDFALWKASKAGEPAWESPF 370 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECS ++ LG+ DIH GG DL FPHH+NE+AQS + N + H Sbjct: 371 GPGRPGWHIECSVVAGDILGERIDIHSGGEDLKFPHHDNELAQSEACFGCNQWVNYFTHT 430 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 G L++EG KMSKS NFITI + LE A +R+ L+ + +P++++ Q + Sbjct: 431 GHLHIEGLKMSKSLKNFITIRQALEHNT-------ARQLRIMFLLQGWDQPMNYSDQTID 483 Query: 329 EA 330 +A Sbjct: 484 DA 485 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 9/100 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 + NTL K F + +++ Y CGPTVYD +H+G+AR + FD++ R++ Y+ V Sbjct: 44 LRNTLTGKKEPFVPMQSRHVKWYTCGPTVYDSSHVGHARTYLSFDIMRRIMTDYF-HYNV 102 Query: 67 TYVRNITDIDDKIIERARQ--------EHPSIPINDAISI 98 Y N TDIDDKII RARQ E PS+ + + + Sbjct: 103 LYQINTTDIDDKIILRARQNELMRLLEEDPSVDFDKLVVL 142 >gi|158312510|ref|YP_001505018.1| cysteine--tRNA ligase [Frankia sp. EAN1pec] gi|158107915|gb|ABW10112.1| Cysteine--tRNA ligase [Frankia sp. EAN1pec] Length = 371 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 155/346 (44%), Gaps = 23/346 (6%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T Y H+G+A + D+ R+ R V RNITD+DD + + AR+ Sbjct: 19 RVYVCGITPYAVTHLGHAATYLWTDLAIRVWRNV--GVPVELARNITDVDDAMFDEARRT 76 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 +P + I S F + T L P H+P A + ++I L ++ GHAY Sbjct: 77 --GLPFDQ----IASLQRFAFDRTMTSLGIRPPDHEPTARAAVTRVIELATALLRAGHAY 130 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMG-TRVPEKYHKKNPADFILWKRSTP--MEPG 203 E + T+ R P + +P D +W+ + P P Sbjct: 131 ERGGSVYARTAEAAERAGLDRAAAIALAAEYNDDPHDPERDDPLDVAVWRAARPDGGYPS 190 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W SPWG GRPGWH EC+AM G D+H GG DL +PHH E + A ++ A Sbjct: 191 WPSPWGPGRPGWHAECAAMVLSTFGSSVDLHAGGADLRYPHHAVEALLAERATGVQPFAR 250 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+ G + G KMSKS GN +++LL R PA +RL L+ + DF Sbjct: 251 AWLRPGTVRSGGVKMSKSLGNLTFVDDLLT------RHSPA-AVRLLCLVRPRDDDWDFD 303 Query: 324 VQRLTEAEILLSKWPQTSTSKGIIDPA-----VLSALYNDLNTVSA 364 EAE L + G + A V +AL +DL+TV A Sbjct: 304 EAAFDEAEAGLDLLYSAAGRPGAVRGASAVDEVDAALLDDLDTVRA 349 >gi|148272876|ref|YP_001222437.1| cysteinyl-tRNA synthetase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|310947178|sp|A5CRN7|MSHC_CLAM3 RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|147830806|emb|CAN01747.1| cysS2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 426 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/344 (30%), Positives = 160/344 (46%), Gaps = 37/344 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYR--LLRYYYGEK 64 +++T + + + +YVCG T YD HIG+A + FD L R L R Y Sbjct: 21 LFDTSAGSVRPAECTGDGRVGLYVCGITPYDATHIGHASTYLAFDTLQRVWLDRGYD--- 77 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD ++ERA + D + ++ + F D L L P Sbjct: 78 -VAYVQNVTDVDDPLLERATAT--GVDWRD----LAAEQVELFRTDMEALRILPPDSYVG 130 Query: 125 ATNHIPQMIYLIQNIILHGHAYE---------ANNEIIFDTSSIPNYGSFS---RRKIDE 172 T + ++ + ++ G AY ++ FD + G ++ D Sbjct: 131 VTEVVDEVAAAVAELVRRGTAYPVATPDAAQPGARDLYFDVARAGADGPWALGDESGYDR 190 Query: 173 QKMGTRV------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHY 226 M PE+ K++P D +LW+ EP W+S GRGRPGWHIEC+ ++ Sbjct: 191 DTMAALSAERGGDPERPGKRDPLDPLLWRAERADEPAWDSAVGRGRPGWHIECAVIALRK 250 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 L + + GGG DLIFPHHE A A E A ++ H+G + +G KMSKS GN + Sbjct: 251 LDRPVTVQGGGSDLIFPHHEMS-AGHAAALTGEDFACVYAHSGMVAYQGEKMSKSLGNLV 309 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 ++ L R+ IRLA+L HYR ++T L E+ Sbjct: 310 LVSR-LRAAGVDPRA-----IRLALLAQHYRADWEWTDALLAES 347 >gi|197693918|gb|ACH71628.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 128/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ S+ +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSVQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVSMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVH--NSSIEFSRIALVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M S L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMISKTLALTDTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693880|gb|ACH71609.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ H+ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEHLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|323651394|gb|ADX97543.1| cysteinyl-tRNA synthetase [Terra1 virus] Length = 487 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 155/320 (48%), Gaps = 37/320 (11%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 I MYVCGPTVY+ +HIG+AR ++ D++ R + + V NITDIDDKII+ A Sbjct: 5 INMYVCGPTVYNDSHIGHARIYVMVDIINRTMTNILNQDT-HLVMNITDIDDKIIKAAND 63 Query: 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + S ++ K +F + +L P R + I +I IQ II + A Sbjct: 64 QLVSWKT------LSKKYEDKFFESMAKLGVAKPDVVIRVSESIDDIIKYIQQIINNDFA 117 Query: 146 Y-EANNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEKY--HKKNPADFILWKRSTPM 200 Y ++ + FDT N G ID EQ +++ + K++ DF LWK Sbjct: 118 YVTSDGSVYFDTIKYVNAGYILDCDIDIEEQTYESQIASEIINEKRHIKDFALWKSRADY 177 Query: 201 EPGWESPW--------GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 + G+ + G PGWHIECSAM +G +IH GG+DL FPHH NE Q+ Sbjct: 178 DVGFFVEFIFNNAIIKTYGVPGWHIECSAMIERTIGDSVNIHFGGIDLKFPHHHNECLQA 237 Query: 253 CC----------ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 EK ++H G L +EG+KMSKS NF TI+E+LET W Sbjct: 238 NAYYHPKYKPNTNINTEKWTQEFMHVGHLCVEGQKMSKSLKNFSTIDEVLETINSNEMRW 297 Query: 303 PAPVIRLAMLMTHYREPIDF 322 + ++R+P++F Sbjct: 298 -------MFMQNNWRKPMEF 310 >gi|197693892|gb|ACH71615.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ H+ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEHLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGTDLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|308505978|ref|XP_003115172.1| CRE-CARS-1 protein [Caenorhabditis remanei] gi|308259354|gb|EFP03307.1| CRE-CARS-1 protein [Caenorhabditis remanei] Length = 770 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 126/245 (51%), Gaps = 26/245 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-- 161 ++F+ D RL L R + ++P++I ++ II +G+AY A + + FDT + Sbjct: 223 KEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIINNGYAYAAEDGSVYFDTKAFEQNP 282 Query: 162 -----------YGSFSRRKIDEQKMG----TRVPEKYH-KKNPADFILWKRSTPMEPGWE 205 YG S + + + G + E+ K+NP DF LWK S EP W Sbjct: 283 KHFYAKLVPEAYGDDSEQLLKNMREGEGELSMSDERLKSKRNPTDFALWKSSKDGEPFWS 342 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 S WG GRPGWHIECS MSS G DIH GG DL FPHH+NEIAQ N + Sbjct: 343 SEWGNGRPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVNYF 402 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G L ++G KMSKS NFITI + LE + +RL LM ++ + +D++ Sbjct: 403 LHCGTLRIQGMKMSKSLKNFITIRKALE-------DYTPRQLRLLFLMHNWADVLDYSSS 455 Query: 326 RLTEA 330 + A Sbjct: 456 TMERA 460 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F + +R Y+CGPTVYD +H+G+AR + D+L R+ R Y+G Sbjct: 29 QLTVYNSLTRQKEIFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGY 88 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII+RARQ H Sbjct: 89 D-VEFIMNITDVDDKIIKRARQSH 111 >gi|197693882|gb|ACH71610.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ H+ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEHLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|171690590|ref|XP_001910220.1| hypothetical protein [Podospora anserina S mat+] gi|170945243|emb|CAP71354.1| unnamed protein product [Podospora anserina S mat+] Length = 780 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 129/239 (53%), Gaps = 26/239 (10%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 ++ K ++F +D L L P R T ++ Q++ ++ I+ +G Y + + FD Sbjct: 222 LSQKFERRFFEDMDALNVLPPDQLTRVTEYVRQIVDFVEKIVANGFGYATPDGSVYFDID 281 Query: 158 SIPNYG-SFSR----RKIDEQKM----GTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 S G S+SR K D + G+ K++P F LWK S P EP W+SPW Sbjct: 282 SFEKAGHSYSRLEPWNKNDPALLADGEGSLSKGASMKRSPNHFALWKASKPGEPAWDSPW 341 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEKTANI 264 GRGRPGWHIECSAM+S +GK DIH GG+DL FPHH+NE+AQS D + AN Sbjct: 342 GRGRPGWHIECSAMASEAIGKTMDIHSGGVDLRFPHHDNELAQSEAYWSTPDCHVQWANY 401 Query: 265 WIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 +IH G ++SKS N+ TI +L K + RS +R+ L+ +++ I+ T Sbjct: 402 FIHMG-------QLSKSLKNYTTIRSVLSEKDWTARS-----LRICFLLMPWQDGIEVT 448 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 60/85 (70%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN+L R +F +DP+ + Y CGPTVY+ AH+G+A+ + D++ R++R Y+G Sbjct: 14 LKIYNSLTRTKNDFIPVDPTGEVVTWYACGPTVYEDAHLGHAKNYVSTDIIRRIMRDYFG 73 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V +V N TDIDDKII +AR++H Sbjct: 74 FR-VKFVMNTTDIDDKIILQARRQH 97 >gi|197693912|gb|ACH71625.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKESKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDYGSLSMHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|317035121|ref|XP_001401149.2| cysteinyl-tRNA synthetase [Aspergillus niger CBS 513.88] Length = 804 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 133/255 (52%), Gaps = 26/255 (10%) Query: 86 EHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH 142 E +IP DA I +T K F++D L L P R T + Q+ ++ I+ + Sbjct: 228 EGSTIP-GDAHEIFTKLTKKYEDHFMRDMRDLNVLDPDAVTRVTEYGQQIADFVEKIVAN 286 Query: 143 GHAY-EANNEIIFDTSSIPNYGSFSRRKI-----------DEQKMGTRVPEKYHKKNPAD 190 Y ++ + FD + G+ R D + +R EK K+ D Sbjct: 287 KFGYVTSDGSVYFDIKAFEEAGNHYARLEPWNRNNQPLLRDGEGALSRATEK---KSSDD 343 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK S P EP W S WG+GRPGWHIECSAM+S LG DIH GG+DL FPHH+NE+A Sbjct: 344 FALWKASRPGEPSWSSKWGQGRPGWHIECSAMASSCLGSQIDIHSGGIDLAFPHHDNELA 403 Query: 251 QSCC--ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 QS + ++ N ++H G L+++G KMSKS NF T+ + LE + RS +R Sbjct: 404 QSEAYWCEHKQQWVNYFLHMGHLSIQGSKMSKSLKNFTTVKDALERGDYTPRS-----LR 458 Query: 309 LAMLMTHYREPIDFT 323 + L+ +R+ ++ T Sbjct: 459 IVFLLGGWRDGVEIT 473 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 19/156 (12%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R T F +DP ++ Y CGPTVYD AH+G+AR + D+L R+LR Y+ Sbjct: 23 LKVWNSLTRSKTPFVPLDPKGRKVKWYACGPTVYDDAHLGHARNYVSTDILRRILRDYF- 81 Query: 63 EKCVTYVRNITDIDDKIIERARQ---------EHPSIPINDAISIITSKNTQQFVKDTTR 113 + V +V NITD+DDKII R RQ EHP++ + + K ++K Sbjct: 82 KFDVEFVMNITDVDDKIILRGRQQHLFNKYIAEHPTVTPD--VLETARKAYSAYIK--KN 137 Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEAN 149 L + P +P Q +Y ++L G A EA+ Sbjct: 138 LPLVDPDTEPENFVAEAQKVY---GVVLQGGALEAD 170 >gi|169615663|ref|XP_001801247.1| hypothetical protein SNOG_10992 [Phaeosphaeria nodorum SN15] gi|160703013|gb|EAT81491.2| hypothetical protein SNOG_10992 [Phaeosphaeria nodorum SN15] Length = 837 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 129/243 (53%), Gaps = 25/243 (10%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTS 157 +T K +F +D L L P R T + Q++ ++ I+ +G AY ++ + FD Sbjct: 275 LTQKYEARFNEDMRSLNVLDPNVVTRVTEYGDQIVTFVEKIVANGFAYSTSDGSVYFDIE 334 Query: 158 S---IP----------NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGW 204 + +P N G S + E + + + K++ +DF LWK S P EP W Sbjct: 335 AFEKVPGNHYARLEPWNRGDKSLQADGEGALSQQ--KTSEKRSESDFALWKSSKPGEPAW 392 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS----CCADRIEK 260 +SPWG GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS + + Sbjct: 393 KSPWGPGRPGWHIECSVMASDVLGEQMDIHSGGIDLCFPHHDNELAQSEAHWSSKEGGHQ 452 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 N ++H G L++ G KMSKS NF TI E L + RS +R+ L+ + + I Sbjct: 453 WVNYFLHMGHLSISGSKMSKSLKNFTTIREALARGDWNARS-----LRIIFLLGGWHDGI 507 Query: 321 DFT 323 + T Sbjct: 508 EIT 510 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 3/86 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K+K++N+L R EF +DP ++ Y CGPTVYD AH+G+AR + D+L R+L Y+ Sbjct: 58 KLKVWNSLTRSKNEFVPVDPEGKVVKWYSCGPTVYDDAHLGHARNYVTIDILRRVLAGYF 117 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G + +V+NITD+DDKII R RQ++ Sbjct: 118 GYN-LRFVQNITDVDDKIILRGRQQY 142 >gi|197693920|gb|ACH71629.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGSDLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|330924798|ref|XP_003300783.1| hypothetical protein PTT_12131 [Pyrenophora teres f. teres 0-1] gi|311324916|gb|EFQ91133.1| hypothetical protein PTT_12131 [Pyrenophora teres f. teres 0-1] Length = 798 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 24/245 (9%) Query: 96 ISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIF 154 + +T K +F +D L L P R T + +++ + II +G AY ++ + F Sbjct: 235 FTTLTKKYEARFNEDMRNLNVLEPDVVTRVTEYGNEIVSFVDKIIKNGMAYSTSDGSVYF 294 Query: 155 DTSSIP-------------NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPME 201 D + N G + + E + + + K+N +DF LWK S P E Sbjct: 295 DIENFEKKEGNHYARLEPWNRGDTNLQADGEGALSS--VKTSEKRNDSDFALWKSSKPGE 352 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC---ADRI 258 P W+SPWG GRPGWHIECS M+S LG+ DIH GG+DL FPHH+NE+AQS D Sbjct: 353 PAWDSPWGPGRPGWHIECSVMASAVLGEQMDIHSGGIDLCFPHHDNELAQSEAYWQKDGG 412 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 + N ++H G L++ G KMSKS NF TI E L + RS +R+ L+ + + Sbjct: 413 AQWVNYFLHMGHLSISGSKMSKSLKNFTTIREALSRGDWNARS-----LRIIFLLGGWHD 467 Query: 319 PIDFT 323 I+ T Sbjct: 468 GIEIT 472 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 3/86 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K+K++N+L R +F IDP ++ Y CGPTVYD AH+G+AR + D+L R+L +YY Sbjct: 21 KLKVWNSLTRTKNDFIPIDPEGKEVKWYSCGPTVYDDAHLGHARNYVTNDILRRILAHYY 80 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 G V +V+NITD+DDKII R RQ+H Sbjct: 81 GYN-VKFVQNITDVDDKIILRGRQQH 105 >gi|197693944|gb|ACH71641.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSMEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693930|gb|ACH71634.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVSMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSMH--NSSMEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGSDLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|220912666|ref|YP_002487975.1| cysteinyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] gi|310947172|sp|B8H8K8|MSHC_ARTCA RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|219859544|gb|ACL39886.1| cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Arthrobacter chlorophenolicus A6] Length = 410 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 167/355 (47%), Gaps = 40/355 (11%) Query: 5 IKIYNTLERKITEFQAID-PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 I++++T ++ D PS MYVCG T YD H+G+A + FD+L R R Sbjct: 4 IRLFDTAAGHEVLLESGDRPS---MYVCGITPYDATHMGHAASYVAFDLLNRAWRD--AG 58 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 K V YV+N+TD+DD ++ERA N + F D L L+P H Sbjct: 59 KDVDYVQNVTDVDDPLLERA------TATNVDWRDLAQSQIDLFQTDMEALNVLSPDHYV 112 Query: 124 RATNHIPQMIYLIQNIILHGHAY-------EANNEIIFDT------SSIPNYGSF-SRRK 169 A I ++ ++ ++ G AY E + ++ +D S P+ S S Sbjct: 113 GAVESISLIVPQVERLVSQGLAYTVPGTNGEPDGDVYYDVEAAGKQSVAPDAWSLGSISG 172 Query: 170 IDEQKMGTRV------PEKYHKKNPADFILWKRSTPMEPGWE-SPWGRGRPGWHIECSAM 222 + E +M P + K+ D +LW+ + EP W + G GRPGWHIEC+ + Sbjct: 173 LSESEMLELFAERGGDPGRSGKRQALDPLLWRVARDGEPSWPGASLGDGRPGWHIECTVI 232 Query: 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 + YL F + GGG DLIFPHHE + + A + H G + L+G KMSKS Sbjct: 233 AQKYLPAPFTVQGGGSDLIFPHHEMGAGHAYSLAGV-PLARHYAHAGMVGLDGEKMSKSK 291 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 GN + +++L + PA IRLA+L HYR +T + A+ L+ W Sbjct: 292 GNLVLVSKLRAAGEN-----PA-AIRLAILAHHYRSDWSWTDEGFAAAKADLAAW 340 >gi|197693894|gb|ACH71616.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 SMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGTDLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|134081832|emb|CAK42087.1| unnamed protein product [Aspergillus niger] Length = 729 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 133/255 (52%), Gaps = 26/255 (10%) Query: 86 EHPSIPINDAISI---ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH 142 E +IP DA I +T K F++D L L P R T + Q+ ++ I+ + Sbjct: 199 EGSTIP-GDAHEIFTKLTKKYEDHFMRDMRDLNVLDPDAVTRVTEYGQQIADFVEKIVAN 257 Query: 143 GHAY-EANNEIIFDTSSIPNYGSFSRRK-----------IDEQKMGTRVPEKYHKKNPAD 190 Y ++ + FD + G+ R D + +R EK K+ D Sbjct: 258 KFGYVTSDGSVYFDIKAFEEAGNHYARLEPWNRNNQPLLRDGEGALSRATEK---KSSDD 314 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK S P EP W S WG+GRPGWHIECSAM+S LG DIH GG+DL FPHH+NE+A Sbjct: 315 FALWKASRPGEPSWSSKWGQGRPGWHIECSAMASSCLGSQIDIHSGGIDLAFPHHDNELA 374 Query: 251 QSCC--ADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 QS + ++ N ++H G L+++G KMSKS NF T+ + LE + RS +R Sbjct: 375 QSEAYWCEHKQQWVNYFLHMGHLSIQGSKMSKSLKNFTTVKDALERGDYTPRS-----LR 429 Query: 309 LAMLMTHYREPIDFT 323 + L+ +R+ ++ T Sbjct: 430 IVFLLGGWRDGVEIT 444 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSN--IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++N+L R T F +DP ++ Y CGPTVYD AH+G+AR + D+L R+LR Y+ Sbjct: 23 LKVWNSLTRSKTPFVPLDPKGRKVKWYACGPTVYDDAHLGHARNYVSTDILRRILRDYF- 81 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 + V +V NITD+DDKII R RQ+H Sbjct: 82 KFDVEFVMNITDVDDKIILRGRQQH 106 >gi|197693884|gb|ACH71611.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSMEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693948|gb|ACH71643.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693896|gb|ACH71617.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSGIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSMEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|296418824|ref|XP_002839025.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635019|emb|CAZ83216.1| unnamed protein product [Tuber melanosporum] Length = 718 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 125/252 (49%), Gaps = 42/252 (16%) Query: 94 DAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEII 153 + S +TS F +D L L PT R + IP+ + ++ ++ G AY Sbjct: 194 EVFSKLTSYWENHFNEDMATLNVLPPTTVTRVSEFIPENVAFVKKLVDRGFAYPTA---- 249 Query: 154 FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR---STPMEPGWESPWGR 210 D SS+ G S KK P DF LWK P EP W+SPWG+ Sbjct: 250 -DGSSLIADGEAS------------------KKTPQDFALWKAFKAEKPGEPSWDSPWGK 290 Query: 211 GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS------CC-----ADRIE 259 GRPGWHIECS M S LG DIH GG+DL FPHH+NEIAQS CC AD Sbjct: 291 GRPGWHIECSVMCSEVLGGQVDIHSGGIDLAFPHHDNEIAQSEAYWDGCCDTPKTADGKH 350 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 + N ++H G L++ G KMSKS NF++I + L GG W +R+ L+ +R+ Sbjct: 351 QWVNYFLHMGHLSIHGSKMSKSLKNFVSIRDALTR---GG--WTPRGLRVVFLLGGWRDG 405 Query: 320 IDFTVQRLTEAE 331 I+ L EA+ Sbjct: 406 IEVREGVLMEAK 417 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/85 (54%), Positives = 60/85 (70%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRM--YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYN+L R+ F IDPS R+ Y CGPTVYD H+G+AR + DVL R+LR Y+G Sbjct: 25 LHIYNSLTREKNVFVPIDPSGRRITWYCCGPTVYDAGHLGHARNYVTTDVLRRILRDYFG 84 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TD+DDKII RARQ+H Sbjct: 85 FD-VQFVQNVTDVDDKIILRARQQH 108 >gi|302508593|ref|XP_003016257.1| hypothetical protein ARB_05655 [Arthroderma benhamiae CBS 112371] gi|291179826|gb|EFE35612.1| hypothetical protein ARB_05655 [Arthroderma benhamiae CBS 112371] Length = 1165 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 124/242 (51%), Gaps = 15/242 (6%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTS 157 +T +F++D L L P RAT++IP++I I+ II +G AY ++ I F+ Sbjct: 63 LTRNFETRFLEDMRFLNVLDPDELTRATSYIPEIIQFIEKIIDNGFAYSTSDGSIYFNID 122 Query: 158 SIPNYGS-------FSR--RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 N G+ ++R + + G+ K + DF LW S EP W PW Sbjct: 123 KFANAGNHYAKLEPWNRHNKHLQRDGEGSLSKNTTAKASKNDFALWNASRAGEPSWPGPW 182 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G GRPGWHIECSAM+S LG DIH GG+DL FPHH+NE+ Q + N ++H Sbjct: 183 GNGRPGWHIECSAMASATLGSQIDIHSGGIDLAFPHHDNELPQGEAYWGETQWVNYFLHM 242 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 G L++ G KMSKS NF I L + RS +R+ L+ +RE I+ T + Sbjct: 243 GHLSIHGSKMSKSLKNFTAIGGALAKGTWTSRS-----VRIVFLLGRWREGIEITTDMVN 297 Query: 329 EA 330 A Sbjct: 298 AA 299 >gi|197693954|gb|ACH71646.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693916|gb|ACH71627.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVSMIKTLLEKNIAYQISNGDIYLDTSKDKDYGSLSVH--NSSIEFSRIALVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693902|gb|ACH71620.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693956|gb|ACH71647.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693888|gb|ACH71613.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSMHN-SSVEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|195374027|ref|XP_002046047.1| GM15123 [Drosophila sechellia] gi|194123235|gb|EDW45278.1| GM15123 [Drosophila sechellia] Length = 256 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 117/214 (54%), Gaps = 23/214 (10%) Query: 139 IILHGHAYEANNEIIFDTSS------------IPN-YGSFSRRKIDEQKMGTRVPEKYHK 185 II +G AY ANN + FD + +P YG + E + K Sbjct: 1 IIDNGLAYAANNSVYFDVNGFDKREKHHYAKLVPEAYGDTKSLQEGEGDLSVAEDRLSEK 60 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++ DF LWK S EP W+SPWG+GRPGWHIECSAM+S G FDIH GG+DL FPHH Sbjct: 61 RSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMASDIFGSTFDIHTGGVDLKFPHH 120 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 +NE+AQS A + ++H G L + G KMSKS NF+TI E L+ A Sbjct: 121 DNELAQSEAAFNESEWVKYFLHTGHLTIAGCKMSKSLKNFVTIQEALKKH-------SAT 173 Query: 306 VIRLAMLMTHYREPIDF---TVQRLTEAEILLSK 336 +RLA L+ +++ +D+ T++ T+ E L++ Sbjct: 174 QLRLAFLLHSWKDTLDYSENTMEMATQYEKFLNE 207 >gi|197693924|gb|ACH71631.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKESKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K+ Sbjct: 55 SMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDYGSLSMHN-SSVEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGSDLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693940|gb|ACH71639.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKESKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|311113625|ref|YP_003984847.1| cysteinyl-tRNA synthetase [Rothia dentocariosa ATCC 17931] gi|310945119|gb|ADP41413.1| cysteinyl-tRNA synthetase [Rothia dentocariosa ATCC 17931] Length = 438 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 117/405 (28%), Positives = 179/405 (44%), Gaps = 57/405 (14%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +I++T + + Q +P + +YVCG T YD H+G+A + FDVL R R Sbjct: 20 QIFDTSTGTVVQLQ--EPQHAGLYVCGITPYDATHMGHASTYVAFDVLNRAWRD--AGVT 75 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 VTYV+N+TD+DD ++ERA + + T+ F D L L P H Sbjct: 76 VTYVQNVTDVDDPLLERA------TATGVDWQELAEEQTELFRTDMEALHVLPPDHYVGV 129 Query: 126 TNHIPQMIYLIQNIILHGHAYEA------------NNEIIFDTSSIPNY----------- 162 I + +I++++ AY +I D ++ Sbjct: 130 VESIQWLFPVIEDLVERSLAYRVAGYVDEKGVQHPGGDIYLDLKAVQALPQNEDGYSWTP 189 Query: 163 GSFSRRKIDE------QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGW 215 G S DE ++ G PE+ K++P D +LW+ EP W++ G GRPGW Sbjct: 190 GEVSHMSRDEMLDIFSERGGD--PERSGKRDPLDPLLWRIKREGEPSWDAGSLGEGRPGW 247 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIEC+ ++ ++ + GG DL FPHH+ S A + H G + L+G Sbjct: 248 HIECTMIARKFIDGPLTVQAGGSDLKFPHHDLGAGHSWAVSN-RPHALHYAHTGMVGLDG 306 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 KMSKS GN + +++L + G IRLA++ HYRE +T + L +A+ L Sbjct: 307 HKMSKSRGNLVLVSKL----RAAGVD--PNTIRLAIMDHHYREDWFWTDEDLKKAQARLD 360 Query: 336 KWPQTSTSKGIIDPA--------VLSALYNDLNTVSAIQALHKLA 372 + Q S D + V L +DL T A+ AL A Sbjct: 361 LYRQAVESANGTDSSAAEQALEKVREYLADDLKTSGALMALDAWA 405 >gi|197693950|gb|ACH71644.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKESKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693914|gb|ACH71626.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693960|gb|ACH71649.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVSMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693928|gb|ACH71633.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+++I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVHMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ C +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCTFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693890|gb|ACH71614.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKESKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSMHN-SSVEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693908|gb|ACH71623.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 130/227 (57%), Gaps = 20/227 (8%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKN 187 M+ +I+ ++ AY +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 55 AMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQEKRLEQ- 112 Query: 188 PADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLI 241 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+ Sbjct: 113 --DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLL 170 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 171 FPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693898|gb|ACH71618.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 130/227 (57%), Gaps = 20/227 (8%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKN 187 M+ +I+ ++ AY +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSMHNSSIEFGRIGL-VQEKRLEQ- 112 Query: 188 PADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLI 241 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+ Sbjct: 113 --DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNTPYQIDIHAGGADLL 170 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 171 FPHHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693952|gb|ACH71645.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693900|gb|ACH71619.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY+ +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693904|gb|ACH71621.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSMHN-SSVEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|268565691|ref|XP_002639522.1| Hypothetical protein CBG04128 [Caenorhabditis briggsae] gi|187036303|emb|CAP24909.1| CBR-CARS-1 protein [Caenorhabditis briggsae AF16] Length = 584 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 125/245 (51%), Gaps = 26/245 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-- 161 ++F+ D RL L R + ++P++I ++ II +G+AY A + + FDT + Sbjct: 222 KEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIINNGYAYAAEDGSVYFDTKAFEQNP 281 Query: 162 -----------YGSFSRRKIDEQKMG----TRVPEKYH-KKNPADFILWKRSTPMEPGWE 205 YG S + + G + E+ K+NP DF LWK S EP W Sbjct: 282 KHFYAKLVPEAYGDDSELLLKNMREGEGELSMSDERLKSKRNPTDFALWKSSKDGEPFWP 341 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 S WG GRPGWHIECS MSS G DIH GG DL FPHH+NEIAQ N + Sbjct: 342 SEWGNGRPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVNYF 401 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G L ++G KMSKS NFITI + LE + +RL LM ++ + +D++ Sbjct: 402 LHCGTLRIQGMKMSKSLKNFITIRKALE-------DYTPRQLRLLFLMHNWADVLDYSSS 454 Query: 326 RLTEA 330 + A Sbjct: 455 TMERA 459 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F + +R Y+CGPTVYD +H+G+AR + D+L R+ R Y+G Sbjct: 28 QLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGY 87 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII+RARQ H Sbjct: 88 D-VEFIMNITDVDDKIIKRARQSH 110 >gi|197693932|gb|ACH71635.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------GSYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSMHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693878|gb|ACH71608.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|197693934|gb|ACH71636.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|197693936|gb|ACH71637.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|197693938|gb|ACH71638.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|197693942|gb|ACH71640.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 20/227 (8%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKN 187 M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 55 AMVSMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ- 112 Query: 188 PADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLI 241 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+ Sbjct: 113 --DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLL 170 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 171 FPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|332841659|ref|XP_509736.3| PREDICTED: probable cysteinyl-tRNA synthetase, mitochondrial [Pan troglodytes] Length = 591 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 165/355 (46%), Gaps = 59/355 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 52 VQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTKVFGCN 111 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V ITD+DDKII+RA + +N + + + S + F +D L L PT R Sbjct: 112 IVM-VMGITDVDDKIIKRANE------MNISPASLASLYEEDFKQDMAALKVLPPTVYLR 164 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-- 181 T +IPQ+I I+ II G+AY A + FD S R K+ VP Sbjct: 165 VTENIPQIISFIEGIIARGNAYSTAKGNVYFDLKS---------RGDKYGKLVGVVPGPV 215 Query: 182 -----KYHKKNPADFILWKRST--------------------PMEP--GWESPWGRGR-- 212 H K +I++ RS+ M P GW GR Sbjct: 216 GEPGFSAHLKASYTYIIFSRSSVFCCYRVSEKRRLLRRDTAWGMLPTGGWRGFHQGGRLD 275 Query: 213 -PGWHIECSAMSSHYL-GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 PG + S L G DIH GG+DL FPHHENEIAQ + E+ N ++H+G Sbjct: 276 FPGGGDQLSFCGGGMLFGNQLDIHSGGIDLAFPHHENEIAQCEVFHQCEQWGNYFLHSGH 335 Query: 271 LNLEGR--KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 L+ +G+ KMSKS N+ITI + L+T + V R L + YR ID++ Sbjct: 336 LHAKGKEEKMSKSLKNYITIKDFLKT-------FSPDVFRFFCLRSSYRSAIDYS 383 >gi|197693906|gb|ACH71622.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|197693910|gb|ACH71624.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + +R+ K+ Sbjct: 55 AMVSMIKTLLEKNIAYRISNGDIYLDTSKDKDYGSLSVH--NSSIEFSRIALVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|197693886|gb|ACH71612.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 20/227 (8%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKN 187 M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 55 AMVSMIKTLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ- 112 Query: 188 PADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLI 241 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+ Sbjct: 113 --DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLL 170 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 171 FPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|17509795|ref|NP_491013.1| Cysteinyl tRNA Synthetase family member (crs-1) [Caenorhabditis elegans] gi|3319446|gb|AAC64633.1| Cysteinyl trna synthetase protein 1, isoform a, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 909 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 124/245 (50%), Gaps = 26/245 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-- 161 ++F+ D RL L R + ++P++I ++ II +G+AY A + + FDT + Sbjct: 377 KEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYFDTKAFEQNP 436 Query: 162 -----------YGSFSRR-----KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 YG S + K E ++ K++P DF LWK S EP W Sbjct: 437 KHFYAKLVPEAYGEDSEQLLKNMKESEGELSMSDDRLKSKRSPNDFALWKSSKDGEPFWP 496 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 S WG GRPGWHIECS MSS G DIH GG DL FPHH+NEIAQ N + Sbjct: 497 SEWGNGRPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVNYF 556 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G L ++G KMSKS NFITI + LE + +RL LM ++ + +D++ Sbjct: 557 LHCGTLRIQGMKMSKSLKNFITIRKALE-------DYTPRQLRLLFLMHNWADVLDYSSS 609 Query: 326 RLTEA 330 + A Sbjct: 610 TMERA 614 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F + +R Y+CGPTVYD +H+G+AR + D+L R+ R Y+G Sbjct: 183 QLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGY 242 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII+RARQ H Sbjct: 243 D-VEFIMNITDVDDKIIKRARQSH 265 >gi|197693922|gb|ACH71630.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|197693926|gb|ACH71632.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 20/227 (8%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKN 187 M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 55 AMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ- 112 Query: 188 PADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLI 241 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+ Sbjct: 113 --DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLL 170 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FPHHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 171 FPHHENEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|17509797|ref|NP_491014.1| Cysteinyl tRNA Synthetase family member (crs-1) [Caenorhabditis elegans] gi|14574274|gb|AAK68426.1|AF077541_9 Cysteinyl trna synthetase protein 1, isoform b, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 908 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 124/245 (50%), Gaps = 26/245 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPN-- 161 ++F+ D RL L R + ++P++I ++ II +G+AY A + + FDT + Sbjct: 376 KEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYFDTKAFEQNP 435 Query: 162 -----------YGSFSRR-----KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 YG S + K E ++ K++P DF LWK S EP W Sbjct: 436 KHFYAKLVPEAYGEDSEQLLKNMKESEGELSMSDDRLKSKRSPNDFALWKSSKDGEPFWP 495 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 S WG GRPGWHIECS MSS G DIH GG DL FPHH+NEIAQ N + Sbjct: 496 SEWGNGRPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVNYF 555 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G L ++G KMSKS NFITI + LE + +RL LM ++ + +D++ Sbjct: 556 LHCGTLRIQGMKMSKSLKNFITIRKALE-------DYTPRQLRLLFLMHNWADVLDYSSS 608 Query: 326 RLTEA 330 + A Sbjct: 609 TMERA 613 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F + +R Y+CGPTVYD +H+G+AR + D+L R+ R Y+G Sbjct: 182 QLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGY 241 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V ++ NITD+DDKII+RARQ H Sbjct: 242 D-VEFIMNITDVDDKIIKRARQSH 264 >gi|197693946|gb|ACH71642.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKAFKENKSIQELSSIYI------GSYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 M+ +I+ ++ AY +N +I DTS +YGS S + G R+ K+ Sbjct: 55 AMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQ 112 Query: 190 DFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFP 243 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG DL+FP Sbjct: 113 DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFP 172 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 173 HHENEACQTRCAFGVE-IAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|294880574|ref|XP_002769069.1| cysteinyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] gi|239872171|gb|EER01787.1| cysteinyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] Length = 769 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 114/212 (53%), Gaps = 30/212 (14%) Query: 140 ILHGHAYEANNEIIFDTSSIPNYG--------SFSRRKID------EQKMGTRV------ 179 + G AYE+ + FDT +G S + D E + T Sbjct: 252 VQRGIAYESKGSVYFDTQRYKTHGFNYPKLVPSAGKGATDAEIAEGEGALSTNATGGDFG 311 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 EK H+ DF LWK S EP WESPWG GRPGWHIECS M+S LG DIHGGG D Sbjct: 312 SEKRHRN---DFALWKSSKRGEPSWESPWGLGRPGWHIECSVMASEVLGAHIDIHGGGSD 368 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH+NEIAQS + N ++H G L+++G KMSKS NFITI + L+ Sbjct: 369 LKFPHHDNEIAQSEAYHFNAQWVNYFLHAGHLHIKGLKMSKSLKNFITIRQALQ------ 422 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 S+ A +R+ L+ + +PI+F+ Q + EA+ Sbjct: 423 -SYTARQLRIMFLLQQWDKPINFSDQTIAEAK 453 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L F I+ +RMYVCGPTVYD AH+G+AR + FD++ R+L Y+ + Sbjct: 23 LRVHNSLTDTKVPFVPINGKEVRMYVCGPTVYDSAHMGHARAYLTFDIIRRILEDYFQYR 82 Query: 65 CVTYVRNITDIDDKIIERARQ 85 V Y NITDIDDKII +AR+ Sbjct: 83 -VFYQMNITDIDDKIILKARK 102 >gi|300741532|ref|ZP_07071553.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Rothia dentocariosa M567] gi|300380717|gb|EFJ77279.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Rothia dentocariosa M567] Length = 438 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 57/405 (14%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +I++T + + Q +P + +YVCG T YD H+G+A + FDVL R R Sbjct: 20 QIFDTSTGTVVQLQ--EPQHAGLYVCGITPYDATHMGHASTYVAFDVLNRAWRD--AGVN 75 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 VTYV+N+TD+DD ++ERA + + T+ F D L L P H Sbjct: 76 VTYVQNVTDVDDPLLERA------TATGVDWQELAEEQTELFRTDMEALHVLPPEHYVGV 129 Query: 126 TNHIPQMIYLIQNIILHGHAYEA------------NNEIIFDTSSIPNY----------- 162 I + +I++++ AY + +I D ++ Sbjct: 130 VESIQWLFPVIEDLVERSLAYRVAGYVDEKGVQHPDGDIYLDLKAVQALPQNEDGYSWTP 189 Query: 163 GSFSRRKIDE------QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGW 215 G S DE ++ G PE+ K++P D +LW+ EP W++ G GRPGW Sbjct: 190 GEVSHMSRDEMLDIFSERGGD--PERSGKRDPLDPLLWRIKREGEPSWDAGSLGEGRPGW 247 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIEC+ ++ ++ + GG DL FPHH+ S A + H G + L+G Sbjct: 248 HIECTMIARKFIDGPLTVQAGGSDLKFPHHDLGAGHSWAVSN-RPHALHYAHTGMVGLDG 306 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 KMSKS GN + +++L + G IRL ++ HYRE +T + L +A+ L Sbjct: 307 HKMSKSRGNLVLVSKL----RAAGVD--PNTIRLTIMDHHYREDWFWTDEDLKKAQARLD 360 Query: 336 KWPQTSTSKGIIDPA--------VLSALYNDLNTVSAIQALHKLA 372 + Q S D + V L +DL T A+ AL A Sbjct: 361 LYRQAVESANGTDSSAAEQALEKVREYLADDLKTSGALMALDAWA 405 >gi|28493283|ref|NP_787444.1| cysteinyl-tRNA synthetase [Tropheryma whipplei str. Twist] gi|28572606|ref|NP_789386.1| cysteinyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|61216627|sp|Q83GH3|SYC2_TROWT RecName: Full=Putative cysteinyl-tRNA synthetase 2; AltName: Full=Cysteine--tRNA ligase 2; Short=CysRS 2 gi|61216629|sp|Q83HQ8|SYC2_TROW8 RecName: Full=Putative cysteinyl-tRNA synthetase 2; AltName: Full=Cysteine--tRNA ligase 2; Short=CysRS 2 gi|28410738|emb|CAD67124.1| cysteinyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|28476324|gb|AAO44413.1| cysteinyl-tRNA synthetase [Tropheryma whipplei str. Twist] Length = 450 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 189/384 (49%), Gaps = 27/384 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++ R I + ++ +R+YVCG T Y H+G+A + FD L+RL + Sbjct: 4 FEVFDSRTRSIVK---LEDCLLRLYVCGITPYKSTHLGHAFTYVGFDTLFRLA--LDSGR 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++NI+DID+ + + A E I D + T++F +D L CL P + Sbjct: 59 DVLYIQNISDIDEPLFQYA--EKVGIHYKD----LARTQTKRFFEDMHTLECLPPGYVIP 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + + + I+ +I AY+ N ++ S++ + G D + + + E Sbjct: 113 VSKVLDGIKTGIEGLISRNMAYKLPNGDVYFDSTLTDPGKMF--CFDRKTAMSLMLETDT 170 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSS--HYLGKVFDIHGGGLDLIF 242 KNP D +LW R EP WE+ +G GRP WHI C+ +S+ V I+GGG DL F Sbjct: 171 GKNPFDPLLW-RGRGAEPQWEASFGAGRPAWHISCAVLSNLQTQYENVLHIYGGGRDLAF 229 Query: 243 PHHE--NEIAQSCCADRIEK----TANIWIHNGFLNLEGRKMSKSNGNFITINELLE-TK 295 PHHE N +++ A + K ++++H G ++ G KMSKS GN + I++L E + Sbjct: 230 PHHEFTNVLSKLIRAPKDNKQQDTVQDVFMHTGLVSYMGDKMSKSKGNLVFISQLREQCE 289 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSAL 355 K G VIRLA+L HYRE ++ + L A W +++ + I + S Sbjct: 290 KIGLHH---SVIRLALLQRHYREDWEWQDECLDRAASRFRLW-KSALQEYIGAKGIRSTA 345 Query: 356 YNDLNTVSAIQALHKLARESTKNH 379 + T A + +H +S +H Sbjct: 346 DQNKGTQGAWERIHGGVFDSNFDH 369 >gi|309813142|ref|ZP_07706866.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Dermacoccus sp. Ellin185] gi|308432946|gb|EFP56854.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Dermacoccus sp. Ellin185] Length = 420 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 41/387 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T +I + + +YVCG T YD H+G+A + FD+ R++ + Sbjct: 22 VRLFDTAAGEIVPIDLGEQAG--LYVCGITPYDATHLGHAATYVTFDIAQRVMIDAGAQ- 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N+TD+DD ++ERA ++ D + TS+ + F D L + P H Sbjct: 79 -VTYVQNVTDVDDPLLERAARDG-----VDWRELATSE-IELFHGDMEALGVIPPQHYVG 131 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-----------NEIIFDTSSIPNYGSFSRRKIDEQ 173 + + ++ G AY + ++ D + P +GS S EQ Sbjct: 132 VVESMTLHSTNVARLLERGLAYTVDVPAAENAAAGAKDVYLDLAQQPTFGSVSHWD-REQ 190 Query: 174 KMGTRV-----PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPG--WHIECSAMSSHY 226 M PE+ K++ D +LW+ EP W+ G GR WHIEC++++ + Sbjct: 191 MMAVFADRGGDPEREGKRDVFDPLLWRAEREGEPAWDGGPGVGRGRPGWHIECTSIALEH 250 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG F + GGG DLIFPHHE Q+ A+ + H G + +G KMSKS GN + Sbjct: 251 LGNGFTLQGGGTDLIFPHHEMSAVQANALTGQPPFAHHYAHQGMVGYDGEKMSKSKGNLV 310 Query: 287 TINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG 345 ++ L R P+ IRL +L HYR ++T L A+ L+ W + + G Sbjct: 311 KVSVLR-------REGVDPMAIRLVLLDQHYRTDWEYTDALLDAAKERLATWRRAIEADG 363 Query: 346 I----IDPAVLSALYNDLNTVSAIQAL 368 + AV AL +DL+T +A+ A+ Sbjct: 364 VDATPTIEAVRRALRSDLDTPAALAAI 390 >gi|148690119|gb|EDL22066.1| mCG11180, isoform CRA_b [Mus musculus] Length = 270 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 121/222 (54%), Gaps = 15/222 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 95 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 148 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 149 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPG 204 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 K++ +DF LWK + P E W SPWG GRPGWHIECS M+ Sbjct: 205 DSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMA 246 >gi|12862152|dbj|BAB32367.1| unnamed protein product [Mus musculus] Length = 276 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 121/222 (54%), Gaps = 15/222 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 43 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 100 Query: 65 C-VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 C V +ITD+DDKII+RA + +N + + S ++F +D L L PT Sbjct: 101 CNVVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYL 154 Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPE 181 R T +IPQ+I I+ II HGHAY A + FD + + YG ++ T P Sbjct: 155 RVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGDKYGKL----VNTVPSATAEPG 210 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 K++ +DF LWK + P E W SPWG GRPGWHIECS M+ Sbjct: 211 DSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMA 252 >gi|116751465|ref|YP_848152.1| cysteinyl-tRNA synthetase, class Ia [Syntrophobacter fumaroxidans MPOB] gi|116700529|gb|ABK19717.1| cysteinyl-tRNA synthetase, class Ia [Syntrophobacter fumaroxidans MPOB] Length = 418 Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 94/328 (28%), Positives = 167/328 (50%), Gaps = 20/328 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ R+ F+ + ++M+ CGP++Y H+GN R + DVL R L + Sbjct: 2 LQLYNTMSRRKERFEPRNEGAVKMFSCGPSIYGRPHVGNYRSFLWEDVLQRYLEHL--GF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++TD++DK I A++ ++ +T +NT+ F ++ L P+ PR Sbjct: 60 TVERALSLTDVEDKAISEAQKAGTTV------LELTDRNTRLFFEEAGALRIKLPSLVPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE-QKMGTRVPEKY 183 ++ + Q + LI ++ G AY ++ FD + +G R + + K R + Sbjct: 114 SSTTVEQAVRLILLLLSKGIAYWHEGDVFFDPLQVKGFGRLFRLDMSKWPKAKRRFKQDT 173 Query: 184 H---KKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + + N DF+LW +P W++P G+GRP W+I+ AM + +LG DI GG+D Sbjct: 174 YPGRRWNLGDFVLWHGYRQGDPLYWDTPIGKGRPAWNIQDPAMITRHLGYTIDIACGGVD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 ++ HH+ +A A E+ + WIH L ++G+KMSKS GN + +LL+ Sbjct: 234 NLYRHHDYNLA-VIEAISGEEFSRYWIHGEHLLVDGKKMSKSVGNILYPEDLLKEGA--- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRL 327 IR ++ ++R+ I+ T+ R Sbjct: 290 ---EHRHIRFYLIYGNHRKTINLTMDRF 314 >gi|149057585|gb|EDM08828.1| rCG43187, isoform CRA_b [Rattus norvegicus] Length = 385 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 120/222 (54%), Gaps = 39/222 (17%) Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ +DF LWK + P E W SPWG GRPGWHIECSAM+S G DIH GG+DL FPH Sbjct: 44 KRHSSDFALWKGAKPQEVFWASPWGDGRPGWHIECSAMASEVFGSQLDIHTGGIDLAFPH 103 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGR--KMSKSNGNFITINELLETKKFGGRSW 302 HENEIAQS + ++ N ++H+G L+++G+ KMSKS N+ITI + L+T + Sbjct: 104 HENEIAQSEVFHQCQQWGNYFLHSGHLHVKGKEEKMSKSLKNYITIKDFLQT-------F 156 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------------------------- 336 V RL L T+YR ID++ L EA LL Sbjct: 157 SPDVFRLFCLRTNYRSAIDYSDSTLEEARHLLLGLASFVEDARAYVKGQLICGPVGEDVL 216 Query: 337 WPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN 378 W + +++K AV +AL ND +T A+ ++ L + + Sbjct: 217 WERLASTK----KAVKAALANDFDTPRAVNSILDLVHHANRQ 254 >gi|255572116|ref|XP_002526998.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223533633|gb|EEF35370.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] Length = 183 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 96/174 (55%), Gaps = 2/174 (1%) Query: 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 + L C R N +P + + AY + ++ F PNYG S +K Sbjct: 3 NCAALTCQVLLKCSREVNPLPVKELQLSSDYQQWFAYASEGDVFFSVDEFPNYGQLSGQK 62 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229 ++ + G R P+ K+NPADF LWK + P EP WESPW GRPGWHIEC AMS L Sbjct: 63 LENHRAGERNPDS-RKQNPADFALWKAAKPGEPSWESPWVPGRPGWHIECGAMSVQCLTF 121 Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 FDIHGGG DLIFPH+ENE+ +S A E + W+HNG + KMSKS G Sbjct: 122 KFDIHGGGSDLIFPHYENEMTRS-IATCQESNVSYWMHNGHVTNNNEKMSKSPG 174 >gi|261884433|ref|ZP_06008472.1| cysteinyl-tRNA synthetase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 241 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 134/241 (55%), Gaps = 17/241 (7%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+++ ++ EF+ I +YVCG VYD AH+G+A+ I FD+L R L+ G K V Sbjct: 3 IYDSILKQKVEFKPIREDEANIYVCGHPVYDDAHLGHAKSSISFDLLRRTLK-SLGYK-V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 +++N TDIDD+I+++ Q P + D IT+ ++ D L +P+AT Sbjct: 61 KFIKNFTDIDDEILKKMSQ--PGKSLED----ITNHYISRYKADMYALNVADADIEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 + +I I + +G AY+ ++ I FDTS Y S S RK ++ + RV K KK Sbjct: 115 TSLTSIINYIPTLFENGWAYKIDDGIYFDTSKDDKYLSLSGRK--DENLIARVASKDEKK 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAM-SSHYLGKV---FDIHGGGLDLIF 242 + DF+LWK E ++SP+GRGRPGW EC AM H+ G DIH GG DL+F Sbjct: 173 DEKDFVLWKFD---ENWYDSPFGRGRPGWRSECVAMIKDHFCGSYEFEIDIHAGGADLLF 229 Query: 243 P 243 P Sbjct: 230 P 230 >gi|311977536|ref|YP_003986656.1| cysteinyl-tRNA synthetase [Acanthamoeba polyphaga mimivirus] gi|81999783|sp|Q5UP36|SYC_MIMIV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|55416788|gb|AAV50438.1| cysteinyl-tRNA synthetase [Acanthamoeba polyphaga mimivirus] gi|308204215|gb|ADO18016.1| cysteinyl-tRNA synthetase [Acanthamoeba polyphaga mimivirus] Length = 509 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 110/341 (32%), Positives = 166/341 (48%), Gaps = 46/341 (13%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 +E +++E I P+ +MYVCGPTVY+ AHIG+AR ++ D++ R + K V Sbjct: 1 METELSE--TILPTVTKMYVCGPTVYNDAHIGHARIYVIVDLINRTMNKILN-KPTHLVM 57 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQ--FVKDTTRLACLAPTHQPRATNH 128 N+TDIDDKII ++ N I+ + + F ++L P R T Sbjct: 58 NVTDIDDKIIRESK--------NKGITWLELARLHENSFFDCMSKLNVTRPDSVIRVTES 109 Query: 129 IPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYG-SFSRRKIDEQKMGTRVPEK---Y 183 I ++ IQ II +G AY +++ + FD+ G FS +E++ + K Sbjct: 110 ISDIVLYIQQIINNGFAYIVSDSSVYFDSIEYKKAGYEFSEIDDEEEQQYESLLSKEIVS 169 Query: 184 HKKNPADFILWKRSTPMEPGWESPW--------GRGRPGWHIECSAMSSHYLGKVFDIHG 235 KK+ DF LWK + + G+ + G PGWHIECSAM LG DIH Sbjct: 170 QKKHHKDFALWKGRSESDVGFNVEFIFDNQTFKSFGVPGWHIECSAMIKKTLGNSIDIHF 229 Query: 236 GGLDLIFPHHENEIAQSCC-----ADRIEKTANI--------WIHNGFLNLEGRKMSKSN 282 GG+DL FPHH NE Q+ + + ++ + +IH G L ++G+KMSKS Sbjct: 230 GGIDLKFPHHYNECLQANAYHHPMYNPLHQSDTMIFHTWTREFIHVGHLCIKGQKMSKSL 289 Query: 283 GNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 NF TI E+L+ W + T +++ +DFT Sbjct: 290 KNFSTIKEMLDKINSNQFRW-------LFMSTKWKQQVDFT 323 >gi|207109052|ref|ZP_03243214.1| cysteinyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1] Length = 242 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 133/241 (55%), Gaps = 26/241 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYG 163 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +YG Sbjct: 3 ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYRVSNGDIYLDTSKDKDYG 62 Query: 164 SFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 S S I+ ++G V EK + DF+LWK + G++SP G+GRPGWHIECS Sbjct: 63 SLSVHNSSIEFGRIGL-VQEK---RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 118 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 +M L DIH GG DL+FPHHENE Q+ CA +E A W+HNGF+N+ Sbjct: 119 SMIFKTLALTNTPYQIDIHAGGADLLFPHHENEACQTRCAFGVE-LAKYWMHNGFVNINN 177 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 KMSKS GN I + L +++ ++R +L HYR ++F E ++L+S Sbjct: 178 EKMSKSLGNSFFIKDAL-------KNYDGEILRNYLLGVHYRSVLNF-----NEEDLLVS 225 Query: 336 K 336 K Sbjct: 226 K 226 >gi|294921527|ref|XP_002778678.1| cysteinyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] gi|239887397|gb|EER10473.1| cysteinyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983] Length = 451 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/147 (49%), Positives = 95/147 (64%), Gaps = 7/147 (4%) Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK S EP WESPWG GRPGWHIECS M+S LG DIHGGG DL FPH Sbjct: 15 KRHRNDFALWKSSKRGEPSWESPWGLGRPGWHIECSVMASEVLGAHIDIHGGGSDLKFPH 74 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NEIAQS + N ++H G L+++G KMSKS NFITI + L+ S+ A Sbjct: 75 HDNEIAQSEAYHFNAQWVNYFLHAGHLHIKGLKMSKSLKNFITIRQALQ-------SYTA 127 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAE 331 +R+ L+ + +PI+F+ Q + EA+ Sbjct: 128 RQLRIMFLLQQWDKPINFSDQTIAEAK 154 >gi|288918881|ref|ZP_06413225.1| Cysteine--tRNA ligase [Frankia sp. EUN1f] gi|288349733|gb|EFC83966.1| Cysteine--tRNA ligase [Frankia sp. EUN1f] Length = 375 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 154/350 (44%), Gaps = 27/350 (7%) Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 R+YVCG T Y H+G+A + D+ R+ R + V RNITD+DD + AR+ Sbjct: 19 RVYVCGITPYAVTHLGHAATYLWTDLTARVWRAAGVQ--VELARNITDVDDAMFTEARRL 76 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 +P + + + F + + L P H+P A + ++I L ++ GHAY Sbjct: 77 --GMPFDQ----VAAMQRFSFDRSMSALGIQPPDHEPTARAAVTRVIELTTALLRAGHAY 130 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPME---PG 203 E N + T+ + R + ++ + R+ P E P Sbjct: 131 ERNGTVYARTAEAADRAGLDRAAAITLAAEFNDDPRDPDRDDPLDVAVWRADPAEGQLPS 190 Query: 204 WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN 263 W SPWG GRPGWH EC+AM G D+H GG DL FPHH E + A + A Sbjct: 191 WPSPWGPGRPGWHAECAAMVLSTFGSSIDLHVGGADLRFPHHAVESLLAEQATGVRPFAR 250 Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 W+H G + + G KMSKS GN +++LL R PA +RL L + DF Sbjct: 251 AWLHPGTVRVGGVKMSKSLGNLAFVDDLLT------RHTPA-ALRLLCLGRAWDADWDFD 303 Query: 324 VQRLTEAEILL------SKWPQTSTSKGIIDPA---VLSALYNDLNTVSA 364 AE L + P PA V +AL ++L+TV A Sbjct: 304 ESAFDAAEAALDGLYAAAARPNGGGGGERESPAAAEVDAALLDNLDTVRA 353 >gi|255018754|ref|ZP_05290880.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL F2-515] Length = 198 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 8/204 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVPE------VADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 115 VTENMDEIIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPW 208 K++ DF LWK + P E WESP+ Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPF 198 >gi|156603446|ref|XP_001618835.1| hypothetical protein NEMVEDRAFT_v1g224771 [Nematostella vectensis] gi|156200573|gb|EDO26735.1| predicted protein [Nematostella vectensis] Length = 475 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 9/176 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 4 LSIYNTLTKSKEAFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDI+DKII RAR+ + ++T + +D RL L P +PR Sbjct: 63 -LTYVRNITDIEDKIINRAREN------GEPFDVLTERMIAAMHEDEARLNILKPDMEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 AT+HIP M+ +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 116 ATDHIPGMLSMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARI 171 >gi|212695898|ref|ZP_03304026.1| hypothetical protein ANHYDRO_00431 [Anaerococcus hydrogenalis DSM 7454] gi|212677021|gb|EEB36628.1| hypothetical protein ANHYDRO_00431 [Anaerococcus hydrogenalis DSM 7454] Length = 204 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 15/198 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT RK +F+ ID + +RMYVCGPTVYD+ HIGNARP+++FD + R LRY + Sbjct: 1 MKIYNTFTRKKEDFKTIDENKVRMYVCGPTVYDYMHIGNARPLVIFDTMRRYLRYLGND- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH--Q 122 V YV N TD+DDKII +A +E+ S +T K + +++D L L H Sbjct: 60 -VKYVVNFTDVDDKIINKAIKENIS------TKEVTDKYIKAYMEDAKDLN-LDEEHTIH 111 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 P+AT + +I ++ ++ AYE++ ++ FD S +YG S + I++ + G Sbjct: 112 PKATETMDDIIDFVKELVDKDCAYESDGDVYFDISKAKDYGHLSGKNIEDLREGASNRLD 171 Query: 179 VPEKYHKKNPADFILWKR 196 +K K+NP DF LWK+ Sbjct: 172 DKDKGKKRNPMDFTLWKK 189 >gi|197693958|gb|ACH71648.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 217 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 20/227 (8%) Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 + TDIDDKII +A +E+ SI +I I + +D L P+ +P+A+ ++ Sbjct: 1 DFTDIDDKIINKALKENKSIQELSSIYI------GSYTRDLNALNVKKPSLEPKASEYLD 54 Query: 131 QMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKN 187 M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK ++ Sbjct: 55 AMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ- 112 Query: 188 PADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLI 241 DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG +L+ Sbjct: 113 --DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGAELL 170 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 FPHH NE Q+ CA +E A W+HNGF+N+ KMSKS GN I Sbjct: 171 FPHHGNEACQTRCAFGVE-LAKYWMHNGFVNINNEKMSKSLGNSFFI 216 >gi|226324504|ref|ZP_03800022.1| hypothetical protein COPCOM_02287 [Coprococcus comes ATCC 27758] gi|225206952|gb|EEG89306.1| hypothetical protein COPCOM_02287 [Coprococcus comes ATCC 27758] Length = 211 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 11/194 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL +K EF ++ +RMYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKVFNTLTKKKEEFVPLEEGKVRMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEEQVS------AQEISQRYIAECKKDMAGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + F T +YG S + +D+ + G R V Sbjct: 113 ATEEICGMVEMISELIDKGYAYEKNGTVYFSTRKFKDYGKLSHKNLDDLRSGGRSLLVSG 172 Query: 182 KYHKKNPADFILWK 195 + K++P DF+LWK Sbjct: 173 EDEKEDPLDFVLWK 186 >gi|25808902|gb|AAN73943.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKE------NKSIQELSSIY 53 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ H+ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 54 IESYTRDLNALNVKKPSLEPKASEHLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|255327118|ref|ZP_05368193.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Rothia mucilaginosa ATCC 25296] gi|255295736|gb|EET75078.1| cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [Rothia mucilaginosa ATCC 25296] Length = 438 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 109/399 (27%), Positives = 175/399 (43%), Gaps = 63/399 (15%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +I++T +I + Q + +YVCG T YD H+G+A + FD+L+R + Sbjct: 20 RIFDTSAGEIVQVQ--EDKAASLYVCGITPYDATHMGHASTYVAFDLLHRA--WLDAGVP 75 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 VTYV+N+TD+DD ++ERA N + T+ F D L + P H Sbjct: 76 VTYVQNVTDVDDPLLERA------TATNVDWRELAEDQTELFRTDMKALNVIPPAHYVGV 129 Query: 126 TNHIPQMIYLIQNIILHGHAYEA------------NNEIIFDTSSIPNYGS--------- 164 I + LI+++ G AY + ++ D ++ + Sbjct: 130 VESIEWLFPLIEDLFRRGLAYRVPGFTDEQGVVHPDGDVYLDLKAVRELPANAEGYSWAP 189 Query: 165 -----FSRRKIDE---QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGW 215 SR ++ E ++ G P + K++ D +LW+ EP W++ G GRPGW Sbjct: 190 GEVCHLSRDEMLEIFAERGGD--PNRAGKRDALDPLLWRVEREGEPSWDAGELGAGRPGW 247 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIEC+ ++ ++ + GG DL FPHH+ S A + H G + L+G Sbjct: 248 HIECTMIARRFVDGSLTVQAGGNDLTFPHHDLGAGHSWAVS-ARPHAKHYAHTGMVGLDG 306 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 KMSKS GN + ++ L + A +RLA++ HYR +T + L A+ L Sbjct: 307 HKMSKSRGNLVLVSRLRAAGE------DANAVRLAIMGQHYRSDWFWTDELLEHAKARLD 360 Query: 336 KWPQTST-------SKGIID-------PAVLSALYNDLN 360 + + S+G+ D AV AL DLN Sbjct: 361 TYRHAVSVAEGREGSEGVTDEAAVELLAAVREALGEDLN 399 >gi|25808850|gb|AAN73917.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|260781591|ref|XP_002585889.1| hypothetical protein BRAFLDRAFT_256696 [Branchiostoma floridae] gi|229270953|gb|EEN41900.1| hypothetical protein BRAFLDRAFT_256696 [Branchiostoma floridae] Length = 736 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 109/207 (52%), Gaps = 26/207 (12%) Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----------------RVPEKY 183 + H YE+N + FDT+ S K+ + G R+ EK Sbjct: 240 VRHIVKYESNKSVYFDTTKFDGADSHFYAKLVPEAFGDSKAMLEGEGDLSISQDRLSEK- 298 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 ++ DF LWK S P EP W+SPWG GRPGWHIECS M+S LG DIH GG DL FP Sbjct: 299 --RSTTDFALWKASKPGEPSWDSPWGMGRPGWHIECSVMASSILGGSLDIHTGGYDLKFP 356 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HH+NEIAQ+ + ++H+G L +EG KMSKS NFITI E L ++ R Sbjct: 357 HHDNEIAQAEAYYDNDHWVRYFLHSGHLTIEGCKMSKSLKNFITIQEALS--RYSSRQ-- 412 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA 330 +RL L+ +++ +D++ + A Sbjct: 413 ---LRLGFLLHSWKDTLDYSSDTMGTA 436 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 78/166 (46%), Gaps = 17/166 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L RK F + Y CGPTVYD +H+G+AR I FD+L R+++ Y+ Sbjct: 23 LKLYNSLTRKKEVFVPQKGRRVGWYSCGPTVYDTSHMGHARSYISFDILRRVMKDYFNYD 82 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDA----ISIITSKNTQQFVKDTTRLACLAPT 120 V Y NITDIDDKII+RARQ + D ++ T V+D T+ P Sbjct: 83 -VLYAMNITDIDDKIIKRARQNYLLEQYMDKKPSRKQLLEDTQTAMKVRDLTQYGSGRPL 141 Query: 121 HQPRATNHIPQMIYLIQNI------------ILHGHAYEANNEIIF 154 +A M + + + +L GH Y I+ Sbjct: 142 WLRQALGACSGMTHPLTRVRGRRNPLHHWSEVLLGHGYSKQQSCIY 187 >gi|242022617|ref|XP_002431736.1| Cysteinyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212517051|gb|EEB18998.1| Cysteinyl-tRNA synthetase, putative [Pediculus humanus corporis] Length = 728 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 35/247 (14%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN----- 161 F KD + L L P R + +IP++I I+ II +G AY +N + FD ++ Sbjct: 214 FHKDMSDLNVLPPDVLTRVSEYIPEVIEYIKKIIDNGFAYHSNGSVYFDVANFDTNKKHF 273 Query: 162 --------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 YG + E + + KK+ DF LWK S EP WESPWGRGRP Sbjct: 274 YAKLVPEAYGDSKSLQEGEGDLSSTDERTSEKKSINDFALWKNSKSGEPWWESPWGRGRP 333 Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273 GWHIECS M+S G DIH GG+DL FPHH+NEIAQ+ N ++H+G L + Sbjct: 334 GWHIECSVMASAICGSNIDIHTGGVDLKFPHHDNEIAQAEAYFGSNNWINYFLHSGHLTI 393 Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF---TVQRLTEA 330 G K+ KK R +R+A L+ +++ +D+ T++ + Sbjct: 394 SGCKIC--------------IKKNSARQ-----LRIAFLLHSWKDTLDYSPKTMEMSVQY 434 Query: 331 EILLSKW 337 E LL+++ Sbjct: 435 EKLLNEF 441 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+ R+ F + + Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 20 LKLYNSFTRQKEIFIPNVGNRVLWYSCGPTVYDASHMGHARTYISFDILRRVLTEYFGYD 79 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII +ARQE+ Sbjct: 80 -VQYVMNITDIDDKIIRKARQEY 101 >gi|167957252|ref|ZP_02544326.1| Cysteine--tRNA ligase [candidate division TM7 single-cell isolate TM7c] Length = 333 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 165/321 (51%), Gaps = 38/321 (11%) Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWK---RSTPMEPGWESPW 208 + FDTS + +YG +R ID + G RV + K+N DF +WK + + + WESPW Sbjct: 13 LYFDTSKLNDYGKLARLDIDGLEAGARVSVE-GKRNITDFAIWKFSPKDSQRDMEWESPW 71 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 G G PGWH+ECS ++ LG DIH GG+D I HH NEIAQ+ ++ A IW+HN Sbjct: 72 GVGFPGWHLECSVIARETLGDQIDIHTGGIDHIPVHHINEIAQTESVTG-KQFAQIWLHN 130 Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 + ++G KMSKS N IT++++L+ + ++A+L H++ +FT + + Sbjct: 131 NHIKVDGHKMSKSLKNIITLDDILD------HGFSPAAFKVAVLSKHFQTEGNFTWEIMK 184 Query: 329 EAEILLSKWPQTSTSKGIIDP------------------AVLSALYNDLNTVSAIQALHK 370 A W + ++ + I+ A++ L ++LNT A+ + Sbjct: 185 SANQRYKNWQRAASLRHQINKTIDNTDQEKSVPSFAASQALIEILDDNLNTPQALAHIDH 244 Query: 371 LARE------STKNHDLLPIFNASAH-ILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423 + R+ S+ N L F + + ILG+++ +IS +++L+ ER + K Sbjct: 245 VFRQVIEAPLSSINQSALQNFIETINDILGVDLINS--TPDISDDMKQLILERRQAREKK 302 Query: 424 KFSSADYIRKQLESKGFILED 444 ++ +D IR +L ++G + D Sbjct: 303 DWAKSDLIRDKLLAQGISIRD 323 >gi|25808806|gb|AAN73895.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKE------NKSIQELSSI 52 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS + Sbjct: 53 YIESYTRDLNALNVKQPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSMHNSSVE--FSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808856|gb|AAN73920.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 121/220 (55%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKE------NKSIQELSSI 52 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS + Sbjct: 53 YIESYTRDLNALNVKQPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSMHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|149061785|gb|EDM12208.1| cysteinyl-tRNA synthetase (predicted), isoform CRA_c [Rattus norvegicus] Length = 473 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 13/161 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS Sbjct: 424 RPGWHIECSAMAGSLLGASMDIHGGGFDLRFPHHDNELAQS 464 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|312086706|ref|XP_003145183.1| cysteinyl tRNA synthetase 1 [Loa loa] gi|307759655|gb|EFO18889.1| cysteinyl tRNA synthetase 1 [Loa loa] Length = 470 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/146 (48%), Positives = 88/146 (60%), Gaps = 7/146 (4%) Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DF LWK S EP W SPWG+GRPGWHIECSAMSS G DIH GG DL FPH Sbjct: 19 KRNVTDFALWKASKDGEPYWNSPWGKGRPGWHIECSAMSSKICGSSLDIHAGGFDLKFPH 78 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NEIAQ IE N ++H G L + G KMSKS NFITI E L + + A Sbjct: 79 HDNEIAQVEAYYDIENWVNYFLHCGSLRIAGLKMSKSLKNFITIREAL-------KHYSA 131 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA 330 +R+ LM ++ + +D++ + A Sbjct: 132 RQLRILFLMHNWNDVLDYSAASMERA 157 >gi|283458070|ref|YP_003362681.1| cysteinyl-tRNA synthetase [Rothia mucilaginosa DY-18] gi|310947212|sp|D2NT85|MSHC_ROTMD RecName: Full=L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; Short=L-Cys:GlcN-Ins ligase; AltName: Full=Mycothiol ligase; Short=MSH ligase gi|283134096|dbj|BAI64861.1| cysteinyl-tRNA synthetase [Rothia mucilaginosa DY-18] Length = 453 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 109/399 (27%), Positives = 172/399 (43%), Gaps = 63/399 (15%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 +I++T +I + Q + +YVCG T YD H+G+A + FD+L+R + Sbjct: 35 RIFDTAAGEIVQVQ--EDKAASLYVCGITPYDATHMGHASTYVAFDLLHRA--WLDAGVP 90 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 VTYV+N+TD+DD ++ERA N + T+ F D L + P H Sbjct: 91 VTYVQNVTDVDDPLLERA------TATNVDWRELAEDQTELFRTDMKALNVIPPAHYVGV 144 Query: 126 TNHIPQMIYLIQNIILHGHAYEA------------NNEIIFDTSSIPNY----------- 162 I + LI+++ G AY + ++ D ++ Sbjct: 145 VESIEWLFPLIEDLFRRGLAYRVPGFTDEQGVVHPDGDVYLDLKAVRELPANAEGYSWAP 204 Query: 163 GSFSRRKIDE------QKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES-PWGRGRPGW 215 G DE ++ G P + K++ D +LW+ EP W++ G GRPGW Sbjct: 205 GEVCHLTRDEMLEIFAERGGD--PNRAGKRDALDPLLWRVEREGEPSWDAGELGAGRPGW 262 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEG 275 HIEC+ ++ ++ + GG DL FPHH+ S A + H G + L+G Sbjct: 263 HIECTMIARRFVDGSLTVQAGGNDLTFPHHDLGAGHSWAVS-ARPHAKHYAHTGMVGLDG 321 Query: 276 RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 KMSKS GN + ++ L + A +RLA++ HYR +T + L A+ L Sbjct: 322 HKMSKSRGNLVLVSRLRAAGE------DANAVRLAIMGQHYRSDWFWTDELLEHAKARLD 375 Query: 336 KWPQTST-------SKGIIDPA-------VLSALYNDLN 360 + + S+G+ D A V AL DLN Sbjct: 376 TYRHAVSVAEGREGSEGVTDEAAVELLTTVREALGEDLN 414 >gi|25808846|gb|AAN73915.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|148686273|gb|EDL18220.1| cysteinyl-tRNA synthetase, isoform CRA_b [Mus musculus] Length = 473 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 13/161 (8%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---- 160 ++F KD L L P R + ++P+++ +Q I+ +G+ Y +N + FDT+ Sbjct: 304 EEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK 363 Query: 161 -NYGSFSRRKIDEQK--------MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRG 211 +YG + +QK + K++P DF LWK S P EP W PWG+G Sbjct: 364 HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKG 423 Query: 212 RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 RPGWHIECSAM+ LG DIHGGG DL FPHH+NE+AQS Sbjct: 424 RPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQS 464 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YN+L R F D + Y CGPTVYD +H+G+AR I FD+L R+LR Y+ + Sbjct: 111 RLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLRDYF-Q 169 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RARQ + Sbjct: 170 YDVFYCMNITDIDDKIIRRARQNY 193 >gi|25808922|gb|AAN73953.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 121/220 (55%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKESKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG+DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALANAPYQIDIHAGGVDLLFPHHENEACQTRCA 210 >gi|25808918|gb|AAN73951.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMHNSSVE--FSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANSPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|30961751|gb|AAP39992.1| cysteinyl-tRNA synthetase [Helicobacter acinonychis] Length = 219 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 127/225 (56%), Gaps = 21/225 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYKVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCADRIE 259 S+M L DIH GG+DL+FPHHENE Q+ CA +E Sbjct: 170 SSMVFKTLALANTPYQIDIHAGGVDLLFPHHENEACQTRCAFGVE 214 >gi|25808912|gb|AAN73948.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 211 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 118/218 (54%), Gaps = 17/218 (7%) Query: 45 RPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 R I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 RSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI------ 52 Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYG 163 + + +D L P+ +P+A+ H+ M+ +I+ ++ AY +N +I DTS +YG Sbjct: 53 ESYTRDLNALNVKKPSLEPKASEHLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYG 112 Query: 164 SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAM 222 S S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+M Sbjct: 113 SLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSM 170 Query: 223 SSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 VFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 208 >gi|2145826|pir||S72854 cysteine-tRNA ligase (EC 6.1.1.16) - Mycobacterium leprae gi|467009|gb|AAA17194.1| syC [Mycobacterium leprae] Length = 241 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 122/236 (51%), Gaps = 19/236 (8%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T YD H+G+A + FD+++RL E V YV+N+TD+DD + ERA + Sbjct: 1 MYVCGITPYDATHLGHAATYLAFDLIHRLWLDLGHE--VHYVQNVTDVDDPLFERADRN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + D + + F D L L P AT I +++ L+ +++ G AY Sbjct: 58 -GVDWRD----LAEREVALFRDDMASLRILPPHDYVAATETIVEIVELVDKMLVSGAAYV 112 Query: 148 ANNE---IIFDTSSIPNYGSFSRRKID------EQKMGTRVPEKYHKKNPADFILWKRST 198 ++E I F + +G S D EQ G P + K D +LW+ + Sbjct: 113 IDDEYPDIYFRADATLQFGYESGYDRDTMLRLYEQSGGD--PRRPGKNGELDALLWRAAR 170 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCC 254 P EP W SP+G GRPGWH+EC+A++ +G DI GGG DLIFPHHE A + C Sbjct: 171 PGEPSWSSPFGPGRPGWHVECAAIALSRIGIGLDIQGGGSDLIFPHHEFTAAHAEC 226 >gi|25808810|gb|AAN73897.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L + E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLEWSGYE--VVLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALTNTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808852|gb|AAN73918.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808838|gb|AAN73911.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808804|gb|AAN73894.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSDYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYQVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMVFETLALTNTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|221104705|ref|XP_002168960.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 543 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/173 (45%), Positives = 100/173 (57%), Gaps = 9/173 (5%) Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIE 218 IP ++ R I+ + P KK+ DF LWK S EP W SPWG GRPGWHIE Sbjct: 91 IPEIVAYIERIIENGDLSQLNPGA--KKSDRDFALWKASKVGEPYWPSPWGNGRPGWHIE 148 Query: 219 CSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKM 278 CSAM+S LG DIH GG+DL FPHH+NEIAQ+ + N ++H G L +EG KM Sbjct: 149 CSAMASDILGNSIDIHTGGVDLKFPHHDNEIAQAEAHYNCTQWINYFLHAGHLTIEGCKM 208 Query: 279 SKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 SKS NF+T+ + L KK R IRLA L+ + +D++ L EAE Sbjct: 209 SKSLKNFVTVKDAL--KKNTSRQ-----IRLAFLLHAWNATLDYSSNVLKEAE 254 >gi|25808906|gb|AAN73945.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L + E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLEWSGYE--VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMHNSSVE--FSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808848|gb|AAN73916.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKE------NKSIQELSSIY 53 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 54 IESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLVFPHHENEACQTRCA 210 >gi|25808948|gb|AAN73966.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 118/218 (54%), Gaps = 17/218 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ H+ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEHLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 M L DIH GG DL+FPHHENE Q+ C Sbjct: 172 MVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 209 >gi|25808952|gb|AAN73968.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSDYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808938|gb|AAN73961.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKESKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSMHNSSVE--FSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808824|gb|AAN73904.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 125/222 (56%), Gaps = 21/222 (9%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L + E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 HARSAIAFDLLRRTLEWSGYE--VVLVRNFTDIDDKIINKAFKENKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNIAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIE 218 YGS S I+ ++G V EK + DF+LWK + G++SP G+GRPGWHIE Sbjct: 113 YGSLSVHNSSIEFGRIGL-VQEK---RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIE 168 Query: 219 CSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 CS+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 169 CSSMVFETLALTNTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808940|gb|AAN73962.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSIEFSRIALVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|325845931|ref|ZP_08169129.1| cysteine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481837|gb|EGC84869.1| cysteine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 210 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 13/195 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT RK +F+ ID + +RMYVCGPTVYD+ HIGNARP+++FD + R LRY + Sbjct: 1 MKIYNTFTRKKEDFKTIDENKVRMYVCGPTVYDYMHIGNARPLVIFDTMRRYLRYLGND- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV N TD+DDKII +A +E+ S +T K + ++ D L T P Sbjct: 60 -VKYVVNFTDVDDKIINKAIKENIS------TKEVTDKYIKAYMDDAKDLNLDEEHTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----V 179 +AT + +I ++ ++ AYE++ ++ FD S +YG S + I++ + G Sbjct: 113 KATETMDDIIDFVKELVDKDCAYESDGDVYFDISKAKDYGHLSGKNIEDLREGASNRLDD 172 Query: 180 PEKYHKKNPADFILW 194 +K K+NP DF LW Sbjct: 173 KDKGKKRNPMDFTLW 187 >gi|25808814|gb|AAN73899.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808944|gb|AAN73964.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALTNTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|90076574|dbj|BAE87967.1| unnamed protein product [Macaca fascicularis] Length = 230 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/146 (48%), Positives = 90/146 (61%), Gaps = 7/146 (4%) Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W PWG+GRPGWHIECSAM+ LG DIHGGG DL FPH Sbjct: 53 KRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPH 112 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 H+NE+AQS + ++H G L + G KMSKS NFITI + L KK R Sbjct: 113 HDNELAQSEAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDAL--KKHSARQ--- 167 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEA 330 +RLA LM +++ +D++ + A Sbjct: 168 --LRLAFLMHSWKDTLDYSSNTMESA 191 >gi|25808844|gb|AAN73914.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKESKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALTNTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808932|gb|AAN73958.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIKTLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808924|gb|AAN73954.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFSRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808834|gb|AAN73909.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMVFETLALTNTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808936|gb|AAN73960.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808798|gb|AAN73891.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|30959114|gb|AAO73316.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALTDTPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808836|gb|AAN73910.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|25808942|gb|AAN73963.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|30959116|gb|AAO73317.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808892|gb|AAN73938.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFSRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808910|gb|AAN73947.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALTNAPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808858|gb|AAN73921.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|25808854|gb|AAN73919.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808900|gb|AAN73942.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808842|gb|AAN73913.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808916|gb|AAN73950.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK + DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEK---RLDQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808954|gb|AAN73969.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808812|gb|AAN73898.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKAIKE------NKSIQELSSIY 53 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 54 IESYTRDLNALNVKQPSLEPKASEYLDAMVSMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808874|gb|AAN73929.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFETLALTDTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|25808876|gb|AAN73930.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALADTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|25808816|gb|AAN73900.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 118/219 (53%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -GSYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808820|gb|AAN73902.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKESKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808886|gb|AAN73935.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|25808914|gb|AAN73949.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 21/221 (9%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIE 218 YGS S I+ ++G V EK + DF+LWK + G++SP G+GRPGWHIE Sbjct: 113 YGSLSMHNSSIEFGRIGL-VQEK---RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIE 168 Query: 219 CSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 CS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 169 CSSMVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRC 209 >gi|25808898|gb|AAN73941.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 125/222 (56%), Gaps = 21/222 (9%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKD 112 Query: 162 YGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIE 218 YGS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIE Sbjct: 113 YGSLSLHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIE 168 Query: 219 CSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 CS+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 169 CSSMIFKTLALADTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808958|gb|AAN73971.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808950|gb|AAN73967.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIKTLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808862|gb|AAN73923.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|25808870|gb|AAN73927.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|25808860|gb|AAN73922.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808894|gb|AAN73939.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNMKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808920|gb|AAN73952.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 118/219 (53%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -GSYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSMHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808934|gb|AAN73959.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AYE +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYEISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ C Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCT 210 >gi|25808928|gb|AAN73956.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 119/220 (54%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKESKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVSMIKTLLEKNIAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSMHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808904|gb|AAN73944.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 21/222 (9%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKESKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYQVSNGDIYLDTSKDKD 112 Query: 162 YGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIE 218 YGS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIE Sbjct: 113 YGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIE 168 Query: 219 CSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 CS+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 169 CSSMIFKTLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808840|gb|AAN73912.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 2 ARSAIAFDLLRRALELSGYE--VMLVRNFTDIDDKIINKALKE------NKSIQELSSIY 53 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 54 IESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSA 221 GS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+ Sbjct: 114 GSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSS 171 Query: 222 MSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 M L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 MVFKTLALANAPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808946|gb|AAN73965.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 120/220 (54%), Gaps = 17/220 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS Sbjct: 113 YGSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 +M L DIH GG DL+FPHHENE Q+ CA Sbjct: 171 SMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808864|gb|AAN73924.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|25808872|gb|AAN73928.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|25808884|gb|AAN73934.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|25808890|gb|AAN73937.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|25808896|gb|AAN73940.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ S+ +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSVQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 210 >gi|25808888|gb|AAN73936.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ S+ +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSVQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGIIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK + DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEK---RLDQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGTDLLFPHHENEACQTRCA 210 >gi|25808930|gb|AAN73957.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +Y Sbjct: 55 -GSYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ CA Sbjct: 170 SSMVFETLALANAPYQIDIHAGGSDLLFPHHENEACQTRCA 210 >gi|25808868|gb|AAN73926.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 21/221 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 S+M L DIH GG DL+FPHHENE Q+ C Sbjct: 170 SSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRCT 210 >gi|207092910|ref|ZP_03240697.1| cysteinyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1] Length = 332 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 105/330 (31%), Positives = 156/330 (47%), Gaps = 45/330 (13%) Query: 148 ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGW 204 +N +I DTS +YGS S I+ ++G V EK + DF+LWK + G+ Sbjct: 4 SNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK---RLEQDFVLWKSYKGDNDVGF 59 Query: 205 ESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCADRIE 259 +SP G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ CA +E Sbjct: 60 DSPLGKGRPGWHIECSSMIFKTLALTNTPYQIDIHAGGADLLFPHHENEACQTRCAFGVE 119 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A W+HNGF+N+ KMSKS GN I + L +++ ++R +L HYR Sbjct: 120 -LAKYWMHNGFVNINNEKMSKSLGNSFFIKDAL-------KNYDGEILRNYLLGVHYRSV 171 Query: 320 IDFTVQRLTEAEILLSKW----PQTSTSKGIIDP----AVLSALYNDLNTVSAIQALHKL 371 ++F + L ++ L K + + G I+P +L + +DLN A+ L + Sbjct: 172 LNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALSVLESM 231 Query: 372 ARESTKNHD-----------LLPIFNASAHILGIEVCKEHLNKNISIA------IEKLVQ 414 + + D +L +LGI + ++ IE ++ Sbjct: 232 LSSTNEKLDQNPKNKTLKGEILANLKFVEELLGIGFKDPSAYFQLGVSESEKQEIENKIE 291 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILED 444 ER K F AD IR++L + L D Sbjct: 292 ERKRAKVQKDFLKADRIREELLKQKIALMD 321 >gi|25808866|gb|AAN73925.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 209 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 17/215 (7%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I + + Sbjct: 2 IAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESY 53 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS 166 +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +YGS S Sbjct: 54 TRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLS 113 Query: 167 RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSH 225 + G R+ K+ DF+LWK + G++SP G+GRPGWHIECS+M Sbjct: 114 VHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFE 171 Query: 226 YLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 TLALANTPYQIDIHAGGADLLFPHHENEACQTRCA 206 >gi|30961753|gb|AAP39993.1| cysteinyl-tRNA synthetase [Helicobacter acinonychis] gi|30961755|gb|AAP39994.1| cysteinyl-tRNA synthetase [Helicobacter acinonychis] Length = 219 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 126/225 (56%), Gaps = 21/225 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 AR I FD+L R L E V VRN TDIDDKII +A +E N +I ++S Sbjct: 2 ARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKE------NKSIQELSSIY 53 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +Y Sbjct: 54 IESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYKVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCADRIE 259 S+M L DIH GG+DL+FPHHENE Q+ A +E Sbjct: 170 SSMVFKTLALANTPYQIDIHAGGMDLLFPHHENEACQTRWAFGVE 214 >gi|25808800|gb|AAN73892.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 119/219 (54%), Gaps = 17/219 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + +R+ K+ DF+LWK + G++S G+GRPGWHIECS Sbjct: 113 YGSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSHLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 +M L DIH GG DL+FPHHENE Q+ C Sbjct: 171 SMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 209 >gi|25808926|gb|AAN73955.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 209 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 117/215 (54%), Gaps = 17/215 (7%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I + + Sbjct: 2 IAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESY 53 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS 166 +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +YGS S Sbjct: 54 TRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLS 113 Query: 167 RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSH 225 + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+M Sbjct: 114 VH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFE 171 Query: 226 YLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 L DIH GG DL+FPHHENE Q+ CA Sbjct: 172 TLALANAPYQIDIHAGGSDLLFPHHENEACQTRCA 206 >gi|25808956|gb|AAN73970.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 121/220 (55%), Gaps = 21/220 (9%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 A I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 2 ASSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI----- 54 Query: 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNY 162 + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N +I DTS +Y Sbjct: 55 -ESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGDIYLDTSKDKDY 113 Query: 163 GSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIEC 219 GS S I+ ++G V EK + DF+LWK + G++SP G+GRPGWHIEC Sbjct: 114 GSLSMHNSSIEFGRIGL-VQEK---RLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIEC 169 Query: 220 SAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 S+M L DIH GG DL+FPHHENE Q+ C Sbjct: 170 SSMVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRC 209 >gi|322787495|gb|EFZ13583.1| hypothetical protein SINV_12569 [Solenopsis invicta] Length = 159 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 7/156 (4%) Query: 175 MGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + T V + KK+ DF LWK S EP W+SPWGRGRPGWHIECS M+S G DIH Sbjct: 3 LSTTVDKLSEKKSVTDFALWKSSKSGEPWWDSPWGRGRPGWHIECSVMASTICGDSLDIH 62 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GG+DL FPHH+NE+AQ+ ++H+G L + G KMSKS NF+TI E L Sbjct: 63 TGGVDLKFPHHDNELAQAEAYYGNSDWVKYFLHSGHLTIAGCKMSKSLKNFVTIQEAL-- 120 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 KK+ R +RLA L+ +++ +D++ + A Sbjct: 121 KKYSSRQ-----LRLAFLLHSWKDTLDYSDNTMNMA 151 >gi|25808908|gb|AAN73946.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 213 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 118/219 (53%), Gaps = 17/219 (7%) Query: 43 NARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 +AR I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I Sbjct: 1 HARSAIAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI---- 54 Query: 103 NTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPN 161 + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS + Sbjct: 55 --ESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKD 112 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECS 220 YGS S + +R+ K+ DF+LWK + G++S G+GRPGWHIECS Sbjct: 113 YGSLSMH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSHLGKGRPGWHIECS 170 Query: 221 AMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 +M L DIH GG DL+FPHHENE Q+ C Sbjct: 171 SMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 209 >gi|293334393|ref|NP_001169895.1| hypothetical protein LOC100383789 [Zea mays] gi|224032219|gb|ACN35185.1| unknown [Zea mays] Length = 229 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 60/85 (70%), Positives = 69/85 (81%), Gaps = 1/85 (1%) Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 EP W+SPWGRGRPGWHIECSAMS+HYLG VFDIHGGG DLIFPHHENE+AQS A E Sbjct: 132 EPFWDSPWGRGRPGWHIECSAMSAHYLGHVFDIHGGGKDLIFPHHENELAQSQAA-YPES 190 Query: 261 TANIWIHNGFLNLEGRKMSKSNGNF 285 W+HNGF+N + +KM+KS+ NF Sbjct: 191 EVKCWMHNGFVNKDDKKMAKSDNNF 215 >gi|260187118|ref|ZP_05764592.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] Length = 278 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 141/288 (48%), Gaps = 34/288 (11%) Query: 133 IYLIQNIILHGHAYEANNE------IIFDTSSIPNYGSFSRRKID------EQKMGTRVP 180 + LI+ ++ G AY + E I F + +G S D E++ G P Sbjct: 1 VELIEKMLACGAAYVIDREMGEYQDIYFRADATLQFGYESGYDRDTMLRLCEERGGD--P 58 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K + D +LW+ + P EP W SP+G GRPGWH+EC+A++ +G DI GGG DL Sbjct: 59 RRPGKSDELDALLWRAARPGEPSWPSPFGPGRPGWHVECAAIALSRIGSGLDIQGGGSDL 118 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHE A + C + A ++H G + +G KMSKS GN + ++ L Sbjct: 119 IFPHHEFTAAHAECVSGERRFARHYVHAGMIGWDGHKMSKSRGNLVLVSALRAQDV---- 174 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA------ 354 +RL +L HYR ++ Q L EA L +W +T+T+ PA + Sbjct: 175 --EPSAVRLGLLAGHYRADRFWSQQVLDEATARLHRW-RTATAL-PAGPAAVDVVARVRR 230 Query: 355 -LYNDLNTVSAIQALHKLARESTK--NHDL-LPIFNASA--HILGIEV 396 L +DL+T AI AL ++ + HD P A+A +LG+++ Sbjct: 231 YLADDLDTPKAIAALDGWVTDAVEYGGHDAGAPKLVATAIDALLGVDL 278 >gi|25808882|gb|AAN73933.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 205 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 120/214 (56%), Gaps = 21/214 (9%) Query: 51 DVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 D+L R L E V VRN TDIDDKII +A +E+ SI +I I + + +D Sbjct: 1 DLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRD 52 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--R 167 L P+ +P+A+ H+ M+ +I+ ++ AY+ +N +I DTS +YGS S Sbjct: 53 LNALNVKKPSLEPKASEHLDAMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHN 112 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHY 226 I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIECS+M Sbjct: 113 SSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKT 168 Query: 227 LGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 L DIH GG DL+FPHHENE Q+ CA Sbjct: 169 LALTDTPYQIDIHAGGADLLFPHHENEACQTRCA 202 >gi|226324505|ref|ZP_03800023.1| hypothetical protein COPCOM_02288 [Coprococcus comes ATCC 27758] gi|225206953|gb|EEG89307.1| hypothetical protein COPCOM_02288 [Coprococcus comes ATCC 27758] Length = 259 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/272 (34%), Positives = 134/272 (49%), Gaps = 49/272 (18%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS YLG+ DIH GG DLIFPHHENEIAQS A+ E A W+HN FLN++ RKMSKS Sbjct: 1 MSRKYLGEQIDIHAGGEDLIFPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKS 59 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL-------------- 327 GNF T+ E+ E + V+R ML HYR P++F+ + + Sbjct: 60 LGNFRTVREISE-------QYDLQVLRFFMLSAHYRSPLNFSAELMEASKNGLERILNAT 112 Query: 328 ---------TEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAR----- 373 AE + ++ + + A+ +D NT AI A+ +L + Sbjct: 113 DNLKHLIASVAAEEMSAEEKEAFSKTDAYVEEFEKAMDDDFNTADAIAAIFELVKYANTT 172 Query: 374 ---ESTKNH--DLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 ES+K + LL +LG+ + K+ + + IEKL++ER K K F+ A Sbjct: 173 ATAESSKEYLRGLLDRIVKLGDVLGLILDKKE--ELLDADIEKLIEERQAARKAKDFARA 230 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 D IR +L KG IL+D + +WK+K Sbjct: 231 DAIRDELLEKGIILKDTREG------VQWKKK 256 >gi|25808808|gb|AAN73896.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 203 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 12 VMLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 65 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + +R+ Sbjct: 66 SEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQE 123 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 124 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGA 183 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ CA Sbjct: 184 DLLFPHHENEACQTRCA 200 >gi|25808880|gb|AAN73932.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 203 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 12 VMLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 65 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + G R+ Sbjct: 66 SEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQE 123 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 124 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGA 183 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ CA Sbjct: 184 DLLFPHHENEACQTRCA 200 >gi|25808878|gb|AAN73931.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 208 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 21/217 (9%) Query: 48 IVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 I FD+L R L E V VRN TDIDDKII +A +E+ SI +I I + + Sbjct: 1 IAFDLLRRTLELSGYE--VMLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESY 52 Query: 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS 166 +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N +I DTS +YGS S Sbjct: 53 TRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLS 112 Query: 167 --RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMS 223 I+ ++G V EK ++ DF+LWK + G++SP G+GRPGWHIECS+M Sbjct: 113 VHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMI 168 Query: 224 SHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 L DIH GG L+FPHHENE Q+ CA Sbjct: 169 FKTLALTDTPYQIDIHAGGAGLLFPHHENEACQTRCA 205 >gi|30961749|gb|AAP39991.1| cysteinyl-tRNA synthetase [Helicobacter acinonychis] Length = 197 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 19/203 (9%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E N +I ++S + + +D L P+ +P+A Sbjct: 4 VVLVRNFTDIDDKIINKAFKE------NKSIQELSSIYIESYTRDLNALNVKKPSLEPKA 57 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEK 182 + ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 58 SEYLDAMVSMIETLLEKNIAYKVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK 116 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGG 236 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH G Sbjct: 117 RLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFKTLALANTPYQIDIHAG 173 Query: 237 GLDLIFPHHENEIAQSCCADRIE 259 G+DL+FPHHENE Q+ CA +E Sbjct: 174 GVDLLFPHHENEACQTRCAFGVE 196 >gi|25808830|gb|AAN73907.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 205 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/212 (38%), Positives = 114/212 (53%), Gaps = 17/212 (8%) Query: 51 DVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 D+L R L E V VRN TDIDDKII +A +E SI +I I + + +D Sbjct: 1 DLLRRTLELSGYE--VVLVRNFTDIDDKIINKAFKESKSIQELSSIYI------ESYTRD 52 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRK 169 L P+ +P+A+ ++ M+ +I+ ++ AY +N +I DTS +YGS S Sbjct: 53 LNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH- 111 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 + +R+ K+ DF+LWK + G++SP G+GRPGWHIECS+M L Sbjct: 112 -NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLA 170 Query: 229 KV-----FDIHGGGLDLIFPHHENEIAQSCCA 255 DIH GG DL+FPHHENE Q+ CA Sbjct: 171 LANTPYQIDIHAGGADLLFPHHENEACQTRCA 202 >gi|25808822|gb|AAN73903.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 204 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 113/199 (56%), Gaps = 19/199 (9%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 13 VMLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKQPSLEPKA 66 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEK 182 + ++ M+ +I+ ++ AY +N +I DTS +YGS S I+ ++G V EK Sbjct: 67 SEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK 125 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGG 236 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH G Sbjct: 126 RLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAG 182 Query: 237 GLDLIFPHHENEIAQSCCA 255 G DL+FPHHENE Q+ CA Sbjct: 183 GADLLFPHHENEACQTRCA 201 >gi|25808826|gb|AAN73905.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 203 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E N +I ++S + + +D L P+ +P+A Sbjct: 12 VVLVRNFTDIDDKIINKALKE------NKSIQELSSIYIESYTRDLNALNVKKPSLEPKA 65 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+++I+ ++ AY +N +I DTS +YGS S + G R+ Sbjct: 66 SEYLGAMVHMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQE 123 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 124 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGA 183 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ CA Sbjct: 184 DLLFPHHENEACQTRCA 200 >gi|25808832|gb|AAN73908.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 204 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E N I ++S + + +D L P+ +P+A Sbjct: 13 VMLVRNFTDIDDKIINKALKE------NKIIQELSSIYIESYTRDLNALNVKKPSLEPKA 66 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + +R+ Sbjct: 67 SEYLDAMVRMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQE 124 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 125 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGA 184 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ CA Sbjct: 185 DLLFPHHENEACQTRCA 201 >gi|89266455|gb|ABD65519.1| hypothetical protein [Ictalurus punctatus] Length = 142 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 89/142 (62%), Gaps = 8/142 (5%) Query: 154 FDTSSIPN-YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 FDT SI + YG + G++ K++P DF LWK P+EP WESPWGRGR Sbjct: 1 FDTRSIGSRYGKLVNMGNAAGESGSK-----DKRDPRDFALWKAWKPLEPFWESPWGRGR 55 Query: 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN 272 PGWHIECS ++S G DIH GG+DL FPHHENEIAQ ++ N ++H+G L+ Sbjct: 56 PGWHIECSTIASSVFGSQLDIHSGGIDLAFPHHENEIAQCEAYHNCDQWGNYFLHSGHLH 115 Query: 273 LEG--RKMSKSNGNFITINELL 292 L+G KMSKS N+ITI L+ Sbjct: 116 LKGSTEKMSKSLKNYITIKRLI 137 >gi|330948101|gb|EGH48361.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 107 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 61/95 (64%), Positives = 69/95 (72%), Gaps = 1/95 (1%) Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FPHHENEIAQS A Sbjct: 2 PGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFPHHENEIAQSEAATG- 60 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 + AN W+H G + + G KMSKS NF TI ++LE Sbjct: 61 KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE 95 >gi|46205378|ref|ZP_00048616.2| COG0215: Cysteinyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 137 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 16/141 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD A IGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFAPIDPANVRMYACGPTVYDAAXIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-- 118 YG VTY RN+TD+DDKI RA + I I D +T QF +D L L Sbjct: 61 YGAAHVTYARNVTDVDDKINARALER--GITIRD----LTDGTLAQFHEDLRDLGVLMAE 114 Query: 119 --------PTHQPRATNHIPQ 131 P ++PRAT+H+P+ Sbjct: 115 DVIGRASRPAYRPRATDHMPK 135 >gi|289447749|ref|ZP_06437493.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] gi|289420707|gb|EFD17908.1| cysteinyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] Length = 272 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 133/263 (50%), Gaps = 24/263 (9%) Query: 146 YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWE 205 + A+ + F S Y + ++ E++ G P + K + D +LW+ + P EP W Sbjct: 22 FRADATLQFGYES--GYDRDTMLRLCEERGGD--PRRPGKSDELDALLWRAARPGEPSWP 77 Query: 206 SPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 SP+G GRPGWH+EC+A++ +G DI GGG DLIFPHHE A + C + A + Sbjct: 78 SPFGPGRPGWHVECAAIALSRIGSGLDIQGGGSDLIFPHHEFTAAHAECVSGERRFARHY 137 Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +H G + +G KMSKS GN + ++ L +RL +L HYR ++ Q Sbjct: 138 VHAGMIGWDGHKMSKSRGNLVLVSALRAQDV------EPSAVRLGLLAGHYRADRFWSQQ 191 Query: 326 RLTEAEILLSKWPQTSTSKGIIDPAVLSA-------LYNDLNTVSAIQALHKLARESTK- 377 L EA L +W +T+T+ PA + L +DL+T AI AL ++ + Sbjct: 192 VLDEATARLHRW-RTATAL-PAGPAAVDVVARVRRYLADDLDTPKAIAALDGWVTDAVEY 249 Query: 378 -NHDL-LPIFNASA--HILGIEV 396 HD P A+A +LG+++ Sbjct: 250 GGHDAGAPKLVATAIDALLGVDL 272 >gi|25808802|gb|AAN73893.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 203 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 12 VVLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 65 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + G R+ Sbjct: 66 SEYLDAMVSMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQE 123 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 124 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNTPYQIDIHAGGA 183 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ C Sbjct: 184 DLLFPHHENEACQTRCT 200 >gi|25808818|gb|AAN73901.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 203 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI I I + + +D L P+ +P+A Sbjct: 12 VVLVRNFTDIDDKIINKAFKENKSIQELSGIYI------ESYTRDLNALNVKKPSLEPKA 65 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + +R+ Sbjct: 66 SEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVH--NSSMEFSRIGLVQE 123 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 124 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGS 183 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ C Sbjct: 184 DLLFPHHENEACQTRCT 200 >gi|25808828|gb|AAN73906.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 204 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 15/197 (7%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 13 VILVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 66 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + G R+ Sbjct: 67 SEYLDAMVGMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQE 124 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 125 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGA 184 Query: 239 DLIFPHHENEIAQSCCA 255 DL+FPHHENE Q+ C Sbjct: 185 DLLFPHHENEACQTRCT 201 >gi|323651392|gb|ADX97542.1| cysteinyl-tRNA synthetase [Courdo11 virus] Length = 283 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 131/278 (47%), Gaps = 30/278 (10%) Query: 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIER 82 + I MYVCGPTVY+ +HIG+AR ++ D++ R + + V NITDIDDKII+ Sbjct: 2 SNTINMYVCGPTVYNDSHIGHARIYVMVDIINRTMTNILNQD-THLVMNITDIDDKIIKA 60 Query: 83 ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH 142 A + S ++ K +F + +L P R + I +I IQ II + Sbjct: 61 ANDQLVSWKT------LSKKYEDKFFESMAKLGVAKPDVVIRVSESIDDIIKYIQQIINN 114 Query: 143 GHAYEA-NNEIIFDTSSIPNYGSFSRRKID--EQKMGTRVPEKY--HKKNPADFILWKRS 197 AY + + FDT N G ID EQ +++ + K++ DF LWK Sbjct: 115 DFAYVTFDGSVYFDTIKYVNAGYILDCDIDIEEQTYESQIASEIINEKRHIKDFALWKNR 174 Query: 198 TPMEPGWESPW--------GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEI 249 + G+ + G PGWHIECSAM +G +IH GG+DL FPHH NE Sbjct: 175 ADYDVGFFVEFIFNNSIIKTYGVPGWHIECSAMIERTIGDSVNIHFGGIDLKFPHHHNEC 234 Query: 250 AQSCCADR----------IEKTANIWIHNGFLNLEGRK 277 Q+ EK +IH G L +EG+K Sbjct: 235 LQANAYYHPKYKPNTNINTEKWTQEFIHVGHLCVEGQK 272 >gi|331243229|ref|XP_003334258.1| cysteinyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313248|gb|EFP89839.1| cysteinyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 822 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 26/172 (15%) Query: 107 FVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------- 159 F D L P+ R ++++ +++ +Q I+ G AY + FD ++ Sbjct: 226 FFDDMATLGVEPPSVLTRVSDYVEEIVEYVQKIVERGFAYVHEGSVYFDVNAFDGAEVKD 285 Query: 160 -PNYGSFS------------RRKIDEQKMGTRVPEKYH------KKNPADFILWKRSTPM 200 P+ +FS +K+ E+ G K++PADF LWK+S P Sbjct: 286 HPSQQTFSHCYAKLQPGSKANKKLMEEGEGALSVNPASSTATDVKRSPADFALWKKSKPG 345 Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 EPGW+S WG GRPGWHIECS M+S LG DIH GG+DL+FPHH+NE+AQS Sbjct: 346 EPGWQSVWGMGRPGWHIECSVMASAILGDGMDIHSGGVDLMFPHHDNEMAQS 397 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 18/102 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L + F +P+ I +++ + D+L R+ R Y+ Sbjct: 24 LRVYNSLTKSKVPFIPKEPNKI--------TWNY---------VTQDILRRIARDYFAYD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQ 106 V +V N+TDIDDKII+RARQ+H + +IT + T Q Sbjct: 67 -VKFVMNVTDIDDKIIQRARQQHLLENLRSKADLITPELTDQ 107 >gi|327307610|ref|XP_003238496.1| cysteinyl-tRNA synthetase [Trichophyton rubrum CBS 118892] gi|326458752|gb|EGD84205.1| cysteinyl-tRNA synthetase [Trichophyton rubrum CBS 118892] Length = 453 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 88/164 (53%), Gaps = 10/164 (6%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 +T +F++D L L P R T++IP++I I+ II +G AY + I F+ Sbjct: 63 LTRNFETRFLEDMWCLNVLDPDELTRVTSYIPEIIQFIEKIIDNGFAYSTLDGSIYFNID 122 Query: 158 SIPNYGSF---------SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 N G+ + + G+ K + DF LW+ S P EP W SPW Sbjct: 123 KFENAGNHYAKLEPWNRHNKHLQRDGEGSLSKNTTAKASKNDFALWEASRPGEPSWPSPW 182 Query: 209 GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS 252 G GRPGWHIECSAM+S LG DIH GG+DL FPHH+NE+ Q+ Sbjct: 183 GNGRPGWHIECSAMASAKLGSQIDIHSGGIDLAFPHHDNELPQN 226 >gi|229100889|ref|ZP_04231693.1| hypothetical protein bcere0019_940 [Bacillus cereus Rock3-28] gi|228682468|gb|EEL36541.1| hypothetical protein bcere0019_940 [Bacillus cereus Rock3-28] Length = 254 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 131/271 (48%), Gaps = 51/271 (18%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSK 280 M+ YLG DIH GG DL FPHHENEIAQS KT A W+HNG++N++ KMSK Sbjct: 1 MARKYLGDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFARYWMHNGYINIDNEKMSK 58 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-- 338 S GNFI +++++ + + +IR ML HYR PI+F+ + L L + Sbjct: 59 SLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTA 111 Query: 339 ------QTSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK-- 377 + +S + D A A+ +D NT +AI L+ +A + + Sbjct: 112 YGNLKHRMESSANLTDHNEKWLAEMEKFQAAFEEAMDDDFNTANAITELYNVANHANQYL 171 Query: 378 --NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 H + A ILG+E+ KE L + IE L+Q+R+ K + F+ + Sbjct: 172 LEEHTSKVVIEAYVKQLETLFDILGLELAKEEL---LDEEIEALIQKRIEARKNRDFALS 228 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 D IR L+ + ILED TRWK+ Sbjct: 229 DQIRDDLKERNIILEDTAQG------TRWKR 253 >gi|195995945|ref|XP_002107841.1| hypothetical protein TRIADDRAFT_51757 [Trichoplax adhaerens] gi|190588617|gb|EDV28639.1| hypothetical protein TRIADDRAFT_51757 [Trichoplax adhaerens] Length = 764 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 85/170 (50%), Gaps = 45/170 (26%) Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-----YGSF------------- 165 R + ++P++I +Q II + Y +N + FDT + N YG Sbjct: 266 RVSEYVPEVIEFVQGIIKRNYGYVSNGSVYFDTVAFNNSPDHRYGKLLPEAIGDLNALAE 325 Query: 166 -----SRRKIDEQKMG-------------------TRVPEKYHKKNPADFILWKRSTPME 201 K+D G R+ EK ++P DF LWK S P E Sbjct: 326 GEDNNKSNKLDSLICGLSNLSNSDAHLIGELSIGDDRLREK---RSPNDFALWKCSKPGE 382 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 P W+SPWG+GRPGWHIECS M+S LGK DIH GG+DL FPHHENEIAQ Sbjct: 383 PFWDSPWGKGRPGWHIECSVMASAILGKSLDIHSGGVDLKFPHHENEIAQ 432 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++K+YN++ R+ F + S + Y CGPTVYD +H+G+AR + FD++ R+L Y+ Sbjct: 6 QLKLYNSMTRRKDTFVPSNESCLSWYNCGPTVYDASHMGHARSYVSFDIIRRVLTSYFNY 65 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 ++Y NITDIDDKII RAR+ + Sbjct: 66 N-ISYAMNITDIDDKIIFRARRNY 88 >gi|213022498|ref|ZP_03336945.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 151 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 9/157 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR + G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYK 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIP 160 AT+HI ++I L + +I GHAY A+N +++FD + P Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDP 150 >gi|780131|gb|AAD09434.1| cysteinyl-tRNA synthetase [Buchnera aphidicola] Length = 178 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 9/184 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT K F+ I I +YVCG TVYDF HIG+AR +VFD++ R LR + Sbjct: 2 LKIFNTATSKKEIFKPIKNKKINLYVCGVTVYDFCHIGHARTFVVFDMIVRYLRLIGFQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII ++ +E IS T+ ++ KD + L P +PR Sbjct: 61 -VKYIRNITDIDDKIILKSLKEKID------ISAFTNIMIKEMNKDFSLLGISPPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 TN+I +I +I+ +I + +AY ++ ++IF +S YG+ SR+ +D+ GTR+ Sbjct: 114 VTNYIIDIIKVIEKLIKNKNAYVNDHGDVIFSINSDKFYGTLSRQSLDKLISGTRISIDK 173 Query: 184 HKKN 187 KKN Sbjct: 174 EKKN 177 >gi|167535910|ref|XP_001749628.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772020|gb|EDQ85679.1| predicted protein [Monosiga brevicollis MX1] Length = 473 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 138/339 (40%), Gaps = 70/339 (20%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +I N+L R++ + Y CGPTVYD AH+G+A + D L R+L Sbjct: 39 FQITNSLTRQVEPLPIPSGRPLYWYQCGPTVYDDAHLGHAMSHLRLDALRRILE--AAGV 96 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + ++TDIDDKII RA + + + Q F D +L L P R Sbjct: 97 SLIQAMSVTDIDDKIIARAHANQRN------WQDLAREMEQHFWDDMAKLNVLPPHLPLR 150 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSS--IPNYGSFSRRKIDEQKMGTRVPE 181 + H+ +I IQNI+ HAY A + I FD ++ + YG F + E P Sbjct: 151 VSEHMNSIITFIQNILDRNHAYAAEDGSIYFDVTAFGLDRYGPFG---LSESNAQDAEPR 207 Query: 182 KYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + ++P DF LWK S EPG+ESP+GRGRPG Sbjct: 208 AHDIRSPRDFALWKASRHSDEPGFESPFGRGRPG-------------------------- 241 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 CC ++H G L L KMSKS GN +I L Sbjct: 242 ------------CC----------FVHTGMLLLNSVKMSKSLGNSRSIRAFLADHS---- 275 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 A +R L +Y +D T + + AE + K Q Sbjct: 276 ---ADSLRYIALQGYYDTSLDLTSELIDGAESAVRKLAQ 311 >gi|116747926|ref|YP_844613.1| cysteine synthases [Syntrophobacter fumaroxidans MPOB] gi|116696990|gb|ABK16178.1| cysteine synthases [Syntrophobacter fumaroxidans MPOB] Length = 773 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 173/392 (44%), Gaps = 40/392 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +N LERK +F+ + +R+ V GP + + +G +R ++ D L R L V Sbjct: 308 FFNFLERKKVDFKPVVEGKVRICVTGPPLDNPLTLGESRRFLLADFLARFL--TAKSFSV 365 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 V + D+D + I S+ +S T + ++D RLA PR++ Sbjct: 366 EQVVQVPDLDSRTI------GGSLASRMPLSAYTRQQLDLILEDLDRLAVKRAYRYPRSS 419 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHK 185 HI + + ++ G AY+ + F+ S +YG+ SR + + ++GT V + Y K Sbjct: 420 EHINAITEDTKTLVNKGLAYDKLRSVYFNLSGSKDYGALSRVNLKKIRIGTTVDLDAYEK 479 Query: 186 KNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 NP DF L KR+T E ++ WG P WHI ++++ LG DI +D + Sbjct: 480 LNPRDFALLKRATLAELKRGVCLKTDWGNVIPTWHIAAASVALRELGAPIDIQVSSVDFL 539 Query: 242 FPHHEN--EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 FPH EN EI + + AN+W+ + + G + + +G ++E ++ Sbjct: 540 FPHLENVREIGHALTG---KPFANVWMLSERM-WSGADVKREDG----LSEETPIRELNK 591 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---------ILLSKWPQTSTSKGIIDPA 350 + +R +L HYR+PI T + + A I + +T++ + P Sbjct: 592 LGYSPIEVRYWLLSNHYRKPIHVTPENIDNARRGYHRLREFIHRVQHARTASQDHKLLPE 651 Query: 351 VL--------SALYNDLNTVSAIQALHKLARE 374 ++ AL +DLN A L + R+ Sbjct: 652 MIYALEQGFFDALADDLNVPRAFACLFRFIRQ 683 >gi|262043515|ref|ZP_06016633.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039138|gb|EEW40291.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 164 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 9/167 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + + S I MYVCG TVYD H+G+AR + FD++ R LR+ + Sbjct: 2 IKLTNTLGMQKELLVPVKESKIGMYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RAR + +T + + D +L L P +PR Sbjct: 61 -VTFVRNITDIDDKIIQRARDT------GEDWRSLTERMVHEMHIDFAKLGILPPNIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKI 170 T HIPQ+I +I+ ++ AY A N +++F T+S YG S + I Sbjct: 114 PTEHIPQIISMIERLLHRQFAYIAENGDVMFSTASAKGYGKLSGQDI 160 >gi|313585674|gb|ADR70979.1| CysS [Helicobacter pylori] gi|313585678|gb|ADR70981.1| CysS [Helicobacter pylori] gi|313585684|gb|ADR70984.1| CysS [Helicobacter pylori] Length = 185 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 15/185 (8%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 9 VMLVRNFTDIDDKIINKAFKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 62 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + ++ M+ +I+ ++ AY +N +I DTS +YGS S + +R+ Sbjct: 63 SEYLDAMVSMIETLLEKNFAYRVSNGDIYLDTSKDKDYGSLSMH--NSSVEFSRIGLVQE 120 Query: 185 KKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGGGL 238 K+ DF+LWK + G++SP G+GRPGWHIECS+M L DIH GG Sbjct: 121 KRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANAPYQIDIHAGGA 180 Query: 239 DLIFP 243 DL+FP Sbjct: 181 DLLFP 185 >gi|313585672|gb|ADR70978.1| CysS [Helicobacter pylori] Length = 185 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 19/187 (10%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 9 VVLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 62 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEK 182 + ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 63 SEYLDAMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK 121 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGG 236 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH G Sbjct: 122 RLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFETLALTNTPYQIDIHAG 178 Query: 237 GLDLIFP 243 G DL+FP Sbjct: 179 GADLLFP 185 >gi|313585676|gb|ADR70980.1| CysS [Helicobacter pylori] Length = 185 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 19/187 (10%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ S+ +I I + + +D L P+ +P+A Sbjct: 9 VMLVRNFTDIDDKIINKALKENKSVQELSSIYI------ESYTRDLNALNVKKPSLEPKA 62 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEK 182 + ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 63 SEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQEK 121 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGG 236 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH G Sbjct: 122 RLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFKTLALTDTPYQIDIHAG 178 Query: 237 GLDLIFP 243 G DL+FP Sbjct: 179 GADLLFP 185 >gi|313585670|gb|ADR70977.1| CysS [Helicobacter pylori] gi|313585682|gb|ADR70983.1| CysS [Helicobacter pylori] Length = 185 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 19/187 (10%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ SI +I I + + +D L P+ +P+A Sbjct: 9 VVLVRNFTDIDDKIINKALKENKSIQELSSIYI------ESYTRDLNALNVKKPSLEPKA 62 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEK 182 + ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 63 SEYLDAMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK 121 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGG 236 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH G Sbjct: 122 RLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAG 178 Query: 237 GLDLIFP 243 G DL+FP Sbjct: 179 GADLLFP 185 >gi|313585680|gb|ADR70982.1| CysS [Helicobacter pylori] Length = 185 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 19/187 (10%) Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V VRN TDIDDKII +A +E+ S+ +I I + + +D L P+ +P+A Sbjct: 9 VMLVRNFTDIDDKIINKALKENKSVQELSSIYI------ESYTRDLNALNVKKPSLEPKA 62 Query: 126 TNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEK 182 + ++ M+ +I+ ++ AY+ +N +I DTS +YGS S I+ ++G V EK Sbjct: 63 SEYLDTMVGMIETLLEKNIAYQISNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK 121 Query: 183 YHKKNPADFILWKR-STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKV-----FDIHGG 236 ++ DF+LWK + G++SP G+GRPGWHIECS+M L DIH G Sbjct: 122 RLEQ---DFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFKTLALTDTPYQIDIHAG 178 Query: 237 GLDLIFP 243 G DL+FP Sbjct: 179 GADLLFP 185 >gi|308081958|ref|NP_001183395.1| hypothetical protein LOC100501811 [Zea mays] gi|238011202|gb|ACR36636.1| unknown [Zea mays] Length = 178 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 8/136 (5%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ ++N+L ++ FQ + MYVCG T YDF+HIG+AR + FDVLYR L++ E Sbjct: 32 QLVLFNSLTKREEPFQPRVEGKVGMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKFLGYE 91 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRN TDIDDKII+RA + + ++ ++S+ +F+ D T L CL PT +P Sbjct: 92 --VEYVRNFTDIDDKIIKRANER------GETVTSLSSRFINEFLLDMTELQCLPPTCEP 143 Query: 124 RATNHIPQMIYLIQNI 139 R T HI +I LI + Sbjct: 144 RVTEHIEHIIELITKV 159 >gi|261881607|gb|ACY04687.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ H+ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEHLDAMVRMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|168071075|ref|XP_001787045.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659850|gb|EDQ48141.1| predicted protein [Physcomitrella patens subsp. patens] Length = 315 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 123/258 (47%), Gaps = 48/258 (18%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSK 280 M YLG DIH GG DL FPHHENEIAQS KT AN W+HNG++N++ KMSK Sbjct: 1 MVRKYLGDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFANYWMHNGYINIDNEKMSK 58 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-- 338 S GNFIT+N++++ V+R ML HYR PI+++ + L L + Sbjct: 59 SLGNFITVNDIIKIH-------DPQVLRFFMLSVHYRNPINYSEEVLENTRAGLERIRTS 111 Query: 339 ------QTSTSKGIIDP-------------AVLSALYNDLNTVSAIQALHKLARESTKN- 378 +++ S + D + ++ +D NT + I L +L++++ Sbjct: 112 YENLKHRSTASTDLTDTNDEWIAKIADLRKQFVESMDDDFNTANGISVLFELSKQANYYL 171 Query: 379 ----------HDLLPIFNASAHILGIEVCKEHLNKNISIA--IEKLVQERLILLKMKKFS 426 H + F +LG+ + + + I IEK Q R K + F+ Sbjct: 172 LEKTTSPAVIHAFMKEFEELFAVLGLSLSSDEELLDEEIEALIEKRTQAR----KDRDFA 227 Query: 427 SADYIRKQLESKGFILED 444 AD IR QL++ ILED Sbjct: 228 LADQIRDQLKAMNIILED 245 >gi|261881617|gb|ACY04692.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKQPSLEPKASEYLDAMVRMIETLLEKNFAYQVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + +R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSMHNSSVEF--SRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANSPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881623|gb|ACY04695.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKQPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + +R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVH--NSSVEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALTNAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881619|gb|ACY04693.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKQPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881613|gb|ACY04690.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + +R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSMHNSSVE--FSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881637|gb|ACY04702.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881645|gb|ACY04706.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881647|gb|ACY04707.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+++I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSMHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMVFETLALANTPYQIDIHAGGSDLLFPHHENEACQTRC 168 >gi|229077385|ref|ZP_04210045.1| hypothetical protein bcere0023_1000 [Bacillus cereus Rock4-2] gi|228705919|gb|EEL58245.1| hypothetical protein bcere0023_1000 [Bacillus cereus Rock4-2] Length = 254 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 132/271 (48%), Gaps = 51/271 (18%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKT-ANIWIHNGFLNLEGRKMSK 280 M+ YLG DIH GG DL FPHHENEIAQS KT A W+HNG++N+ KMSK Sbjct: 1 MARKYLGDTIDIHAGGQDLAFPHHENEIAQSEAL--TGKTFARYWMHNGYININNEKMSK 58 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-- 338 S GNFI +++++ + + +IR ML HYR PI+F+ + L L + Sbjct: 59 SLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTA 111 Query: 339 ------QTSTSKGIID-------------PAVLSALYNDLNTVSAIQALHKLARESTK-- 377 + +S + D A A+ +D NT +AI L+ +A + + Sbjct: 112 YGNLKHRMESSTDLTDHNEKWLAEIEKFQTAFEEAMNDDFNTANAITELYNVANHANQYL 171 Query: 378 --NHDLLPIFNASA-------HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 H + A ILG+E+ KE + + IE+L+Q+R+ K + F+ + Sbjct: 172 LEEHTSKVVIEAYVKQLETLFDILGLELSKE---ELLDEEIEELIQKRIEARKNRDFALS 228 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 D IR L+ + ILED + TRWK+ Sbjct: 229 DQIRDDLKERNIILED------TAQGTRWKR 253 >gi|261881635|gb|ACY04701.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + +R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHNSSVEF--SRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881621|gb|ACY04694.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + +R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHNSSVEF--SRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALTNAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881649|gb|ACY04708.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQVSNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881605|gb|ACY04686.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALTNTPYQIDIHAGGTDLLFPHHENEACQTRC 168 >gi|261881633|gb|ACY04700.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + +R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHNSSVEF--SRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALTNAPYQIDIHAGGSDLLFPHHENEACQTRC 168 >gi|261881631|gb|ACY04699.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANAPYQIDIHAGGSDLLFPHHENEACQTRC 168 >gi|261881609|gb|ACY04688.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIGSYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSMHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881625|gb|ACY04696.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881627|gb|ACY04697.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 95 AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEII 153 +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I Sbjct: 4 SIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIY 63 Query: 154 FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGR 212 DTS +YGS S + +R+ K+ DF+LWK + G++SP G+GR Sbjct: 64 LDTSKDKDYGSLSMHNSSVE--FSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGR 121 Query: 213 PGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 PGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 122 PGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881663|gb|ACY04715.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSMYIESYTRDLNALNVKKPSLEPKASEYLDAMVSMIKTLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK + DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEK---RLDQDFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881611|gb|ACY04689.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANAPYQIDIHAGGSDLLFPHHENEACQTRC 168 >gi|261881629|gb|ACY04698.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 95 AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEII 153 +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I Sbjct: 4 SIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNFAYRVSNGDIY 63 Query: 154 FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGR 212 DTS +YGS S + +R+ K+ DF+LWK + G++SP G+GR Sbjct: 64 LDTSKDKDYGSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGR 121 Query: 213 PGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 PGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 122 PGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881689|gb|ACY04728.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881693|gb|ACY04730.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881717|gb|ACY04742.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881719|gb|ACY04743.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881721|gb|ACY04744.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881723|gb|ACY04745.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881665|gb|ACY04716.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881667|gb|ACY04717.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881671|gb|ACY04719.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881673|gb|ACY04720.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881675|gb|ACY04721.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881677|gb|ACY04722.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881679|gb|ACY04723.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLDQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881643|gb|ACY04705.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N ++ ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSVQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881669|gb|ACY04718.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSMEFG-RIGLVQEKRLDQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMIFKTLAFTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881655|gb|ACY04711.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVSMIKTLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881615|gb|ACY04691.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881657|gb|ACY04712.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881659|gb|ACY04713.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881661|gb|ACY04714.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N ++ ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSVQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVSMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881705|gb|ACY04736.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGTDLLFPHHENEACQTRC 168 >gi|261881651|gb|ACY04709.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKQPSLEPKASEYLDAMVSMIKTLLEKNIAYRISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFSRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881687|gb|ACY04727.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881695|gb|ACY04731.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881703|gb|ACY04735.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881707|gb|ACY04737.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881709|gb|ACY04738.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881711|gb|ACY04739.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881713|gb|ACY04740.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881727|gb|ACY04747.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881729|gb|ACY04748.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881731|gb|ACY04749.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881733|gb|ACY04750.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881735|gb|ACY04751.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881737|gb|ACY04752.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881739|gb|ACY04753.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881741|gb|ACY04754.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881743|gb|ACY04755.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881745|gb|ACY04756.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881747|gb|ACY04757.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881641|gb|ACY04704.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 95 AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEII 153 +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I Sbjct: 4 SIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIY 63 Query: 154 FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGR 212 DTS +YGS S + +R+ K+ DF+LWK + G++SP G+GR Sbjct: 64 LDTSKDKDYGSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGR 121 Query: 213 PGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 PGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 122 PGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881653|gb|ACY04710.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGD 61 Query: 152 IIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGR 210 I DTS +YGS S + G R+ K+ DF+LWK + G++SP G+ Sbjct: 62 IYLDTSKDKDYGSLSVHN-SSVEFG-RIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGK 119 Query: 211 GRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 120 GRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881681|gb|ACY04724.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881683|gb|ACY04725.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881685|gb|ACY04726.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881701|gb|ACY04734.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881715|gb|ACY04741.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N ++ ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSVQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881691|gb|ACY04729.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENESCQTRC 168 >gi|261881639|gb|ACY04703.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 95 AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNEII 153 +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY +N +I Sbjct: 4 SIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYRVSNGDIY 63 Query: 154 FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPWGRGR 212 DTS +YGS S + +R+ K+ DF+LWK + G++SP G+GR Sbjct: 64 LDTSKDKDYGSLSVH--NSSMEFSRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGR 121 Query: 213 PGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 PGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 122 PGWHIECSSMVFETLALANAPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|261881725|gb|ACY04746.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I ++S + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNNVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|255023445|ref|ZP_05295431.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-208] Length = 147 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 8/150 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I A + ++P + + + D +L T PR Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKATVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIF 154 T ++ ++I LI +I G+AYE+ ++ F Sbjct: 115 VTENMDEIIQLISTLIEKGYAYESAGDVYF 144 >gi|261881697|gb|ACY04732.1| cysteinyl-tRNA synthetase [Helicobacter pylori] gi|261881699|gb|ACY04733.1| cysteinyl-tRNA synthetase [Helicobacter pylori] Length = 168 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 13/171 (7%) Query: 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE-ANNE 151 N +I +++ + + +D L P+ +P+A+ ++ M+ +I+ ++ AY+ +N + Sbjct: 2 NKSIQELSNIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQISNGD 61 Query: 152 IIFDTSSIPNYGSFS--RRKIDEQKMGTRVPEKYHKKNPADFILWKR-STPMEPGWESPW 208 I DTS +YGS S I+ ++G V EK ++ DF+LWK + G++SP Sbjct: 62 IYLDTSKDKDYGSLSVHNSSIEFGRIGL-VQEKRLEQ---DFVLWKSYKGDNDVGFDSPL 117 Query: 209 GRGRPGWHIECSAMSSHYLGKV-----FDIHGGGLDLIFPHHENEIAQSCC 254 G+GRPGWHIECS+M L DIH GG DL+FPHHENE Q+ C Sbjct: 118 GKGRPGWHIECSSMIFKTLALTDTPYQIDIHAGGADLLFPHHENEACQTRC 168 >gi|270708936|ref|ZP_06223130.1| cysteine--tRNA ligase [Haemophilus influenzae HK1212] gi|270315728|gb|EFA27875.1| cysteine--tRNA ligase [Haemophilus influenzae HK1212] Length = 127 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 8/133 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALEN------KETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQ 137 AT+HIP++I +++ Sbjct: 114 ATHHIPEIIEIVE 126 >gi|330948819|gb|EGH49079.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 62 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 43/62 (69%), Positives = 48/62 (77%) Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 1 KEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFPR 60 Query: 245 HE 246 HE Sbjct: 61 HE 62 >gi|2500965|sp|P77986|SYC_STAXY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1514657|emb|CAA68888.1| cysteinyl-tRNA synthetase [Staphylococcus xylosus] Length = 118 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 8/125 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +++++ IT + + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLIKRSKE------LDESVETITDRYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHI 129 NH+ Sbjct: 114 VMNHM 118 >gi|167465216|ref|ZP_02330305.1| cysteinyl-tRNA synthetase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 131 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 81/136 (59%), Gaps = 8/136 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ R+ EF+ + P + MYVCGPTVY++ HIGN RP I FDV++R L Y + Sbjct: 3 LRMFNTMTREKEEFKPVVPGKVSMYVCGPTVYNYIHIGNGRPAIFFDVVHRYLTYLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDK+I +A + + + + + + +++D L PR Sbjct: 62 -VTYVVNFTDVDDKLIRKAEE------TGETVKELADRFIEAYLEDMEALGIRKADINPR 114 Query: 125 ATNHIPQMIYLIQNII 140 T ++ ++I I++++ Sbjct: 115 VTENMDEIISFIRSLV 130 >gi|212695899|ref|ZP_03304027.1| hypothetical protein ANHYDRO_00432 [Anaerococcus hydrogenalis DSM 7454] gi|212677022|gb|EEB36629.1| hypothetical protein ANHYDRO_00432 [Anaerococcus hydrogenalis DSM 7454] Length = 257 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 46/271 (16%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS LG+ D+H GG DL FPHHENEIAQS +K AN W+HNG + ++G KMSKS Sbjct: 1 MSKKLLGETIDLHAGGEDLQFPHHENEIAQSETRSG-KKFANYWMHNGMIQVDGTKMSKS 59 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAE 331 GNF T++++ + + V+R +L YR PI+FT ++RL A+ Sbjct: 60 LGNFFTLHDI-------KKEYDLMVVRFWLLSAGYRLPINFTREIIEQAKNSLERLNNAK 112 Query: 332 ILLSKWPQTSTS------KGII------DPAVLSALYNDLNTVSAIQALHKLAR------ 373 + + ++ K ++ + + +DLNT A+ L ++++ Sbjct: 113 FRMDDLLEKASGNLKDEEKDLVKELDNFENNFRKVMDDDLNTADALTVLFEISKFANTKL 172 Query: 374 ESTKNHDLL----PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 +S + + + +F +LGIE K+ + I KL+ ER K K F+ AD Sbjct: 173 DSNSSKEFVEKTRALFIKLEDVLGIENRKKTDDSLDEDLINKLIDERKEAKKAKDFAKAD 232 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR +L G I++D + T+W+ K Sbjct: 233 EIRDKLSDMGIIIKDTREG------TKWELK 257 >gi|325845903|ref|ZP_08169101.1| cysteine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481809|gb|EGC84841.1| cysteine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 257 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 132/272 (48%), Gaps = 48/272 (17%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS LG+ D+H GG DL FPHHENEIAQS +K AN W+HNG + ++G KMSKS Sbjct: 1 MSKKLLGETIDLHAGGEDLQFPHHENEIAQSETRSG-KKFANYWMHNGMIQVDGTKMSKS 59 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAE 331 GNF T++++ + + V+R +L YR PI+FT ++RL A+ Sbjct: 60 LGNFFTLHDI-------KKEYDLMVVRFWLLSAGYRLPINFTREIIEQAKNSLERLNNAK 112 Query: 332 ILLSKWPQTSTSKGIIDPA--VLSALYN-----------DLNTVSAIQALHKLAR----- 373 + + + S + D +L L N DLNT A+ L ++++ Sbjct: 113 FRMDDLLEKA-SGNLKDEEKDLLKELDNFENNFRKVMDDDLNTADALTVLFEISKFANTK 171 Query: 374 -ESTKNHDLL----PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 +S + + + +F +LGIE K+ + I KL+ ER K K F+ A Sbjct: 172 LDSNSSKEFVEKTRALFIKLEDVLGIENRKKTDDSLDEDLINKLIDERKEAKKAKDFAKA 231 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 D IR +L G I++D + T+W+ K Sbjct: 232 DEIRDKLSDMGIIIKDTREG------TKWELK 257 >gi|148690120|gb|EDL22067.1| mCG11180, isoform CRA_c [Mus musculus] Length = 226 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCN 96 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +ITD+DDKII+RA + +N + + S ++F +D L L PT R Sbjct: 97 -VVMAMSITDVDDKIIKRANE------MNVTPASLASLFEEEFKQDMAALKVLPPTVYLR 149 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFD 155 T +IPQ+I I+ II HGHAY A + FD Sbjct: 150 VTENIPQIIAFIEGIIAHGHAYSTATGSVYFD 181 >gi|213024399|ref|ZP_03338846.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 78 Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 41/78 (52%), Positives = 50/78 (64%) Query: 154 FDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRP 213 FD + P YG SR+ +++ + G RV K+NP DF+LWK S EP W SPWG GRP Sbjct: 1 FDVPTDPTYGQLSRQDLEQLQAGARVDVVDVKRNPMDFVLWKMSKEGEPSWPSPWGEGRP 60 Query: 214 GWHIECSAMSSHYLGKVF 231 GWHIECSAM+ LG F Sbjct: 61 GWHIECSAMNCKQLGNHF 78 >gi|312093145|ref|XP_003147582.1| hypothetical protein LOAG_12019 [Loa loa] gi|307757252|gb|EFO16486.1| hypothetical protein LOAG_12019 [Loa loa] Length = 274 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 1/79 (1%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ RK F + P I+ Y+CGPTVYD +HIG+AR + FD+L R+L+ Y+G + Sbjct: 35 LYNSFTRKKELFVPLKPKQIKWYICGPTVYDSSHIGHARAYLSFDILRRVLQDYFGYD-I 93 Query: 67 TYVRNITDIDDKIIERARQ 85 Y+ NITDIDDKII+RARQ Sbjct: 94 QYIMNITDIDDKIIKRARQ 112 >gi|255026265|ref|ZP_05298251.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-003] Length = 99 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 2/87 (2%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIP 91 V +V N TD+DDK+I A + ++P Sbjct: 62 -VKFVSNFTDVDDKLIRAANELKLTVP 87 >gi|207093180|ref|ZP_03240967.1| cysteinyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1] Length = 128 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 8/134 (5%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IY+T ++ F+ + +YVCGPTVYD AH+G+AR I FD+L R L E V Sbjct: 3 IYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 VRN TDIDDKII +A +E N +I ++S + + +D L P+ +P+A+ Sbjct: 61 VLVRNFTDIDDKIINKALKE------NKSIQELSSIYIESYTRDLNALNVKKPSLEPKAS 114 Query: 127 NHIPQMIYLIQNII 140 ++ M+ +I+ ++ Sbjct: 115 EYLDAMVGMIETLL 128 >gi|328478464|gb|EGF48188.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462] Length = 116 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 4/94 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y G K Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFE-YRGFK 60 Query: 65 CVTYVRNITDIDDKIIERARQ--EHPSIPINDAI 96 VTYV N TD+DDKII A + E P I ND + Sbjct: 61 -VTYVSNFTDVDDKIITAAHKTGEAPLIWRNDLL 93 >gi|315301166|ref|ZP_07872435.1| cysteinyl-tRNA synthetase [Listeria ivanovii FSL F6-596] gi|313630469|gb|EFR98333.1| cysteinyl-tRNA synthetase [Listeria ivanovii FSL F6-596] Length = 107 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 2/87 (2%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+I+FD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIIFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIP 91 V +V N TD+DDK+I A + ++P Sbjct: 62 -VKFVSNFTDVDDKLIHAANELKLTVP 87 >gi|76154769|gb|AAX26189.2| SJCHGC03758 protein [Schistosoma japonicum] Length = 230 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L + F D ++ Y CGPTVYD +H+G+AR IVFDV+ R+L Y+ K Sbjct: 61 VYLYNSLTLRKDLFVPQDERCVKWYTCGPTVYDVSHMGHARTYIVFDVIRRVLMDYFNFK 120 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V YV NITDIDDKII+RARQ H Sbjct: 121 -VIYVLNITDIDDKIIKRARQNH 142 >gi|149246694|ref|XP_001527772.1| cysteinyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239] gi|146447726|gb|EDK42114.1| cysteinyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239] Length = 411 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 M+S G DIH GG+DL FPHH+NE+AQS ++ N ++HNG L+++G+KMSKS Sbjct: 1 MASDVGGSQLDIHSGGVDLCFPHHDNELAQSEAYFDNDQWVNYFMHNGHLHIQGQKMSKS 60 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 NFITI + L + + A +RL ++ + +P+DF ++E + + S + Sbjct: 61 LKNFITIQDAL-------KDYSARQLRLVFAVSSWDKPLDFKDSLISEVKSIESTF 109 >gi|330947053|gb|EGH47846.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 161 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 16/147 (10%) Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DL FPHHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE Sbjct: 1 GGSDLEFPHHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-- 57 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----- 350 + V+R ++ +HYR I+++ L E++ L ++ + +PA Sbjct: 58 -----KYHPEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAF 112 Query: 351 ---VLSALYNDLNTVSAIQALHKLARE 374 +A+ +D T A L ++ RE Sbjct: 113 VERFSTAMNDDFGTPEACAVLFEMVRE 139 >gi|289812154|ref|ZP_06542783.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 117 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 7/113 (6%) Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127 YVRNITDIDDKII+RA + ++ + + + +D L L P +PRAT+ Sbjct: 3 YVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPRATH 56 Query: 128 HIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 HI ++I L + +I GHAY A+N +++FD + P YG SR+ +++ + G RV Sbjct: 57 HIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARV 109 >gi|149246696|ref|XP_001527773.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146447727|gb|EDK42115.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 188 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R EF ++ P + Y CGPTVYD +H+G+AR + D+ R+L+ Y+G Sbjct: 53 LRIYNSLTRSKDEFISLQPGQVTWYSCGPTVYDHSHMGHARNYVSTDICRRILQDYFGYN 112 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V +++N+TDIDDKII ARQ++ Sbjct: 113 -VKFIQNVTDIDDKIIIAARQQY 134 >gi|297721797|ref|NP_001173262.1| Os03g0143300 [Oryza sativa Japonica Group] gi|255674196|dbj|BAH91990.1| Os03g0143300 [Oryza sativa Japonica Group] Length = 98 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 2/77 (2%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++++N++ +K F+ + +RMYVCG T YDF+HIG+AR + FDVLYR L++ E Sbjct: 10 QLELFNSMTKKKELFEPLVEGKVRMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKFLGYE 69 Query: 64 KCVTYVRNITDIDDKII 80 V YVRN TDIDDK + Sbjct: 70 --VEYVRNFTDIDDKFL 84 >gi|221118260|ref|XP_002160433.1| PREDICTED: similar to cysteinyl-tRNA synthetase, partial [Hydra magnipapillata] Length = 170 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K ++ +YN+L R+ F + + Y CGPTVYD +H+G+AR I FD+L R++ Y+ Sbjct: 40 KSQLHLYNSLTRETNLFVPQSGNKVTWYSCGPTVYDASHMGHARSYITFDILRRVMSDYF 99 Query: 62 GEKCVTYVRNITDIDDKIIERARQEH 87 + YV NITD+DDKII RAR+ H Sbjct: 100 NFD-IFYVMNITDVDDKIINRARRNH 124 >gi|266623922|ref|ZP_06116857.1| cysteine--tRNA ligase [Clostridium hathewayi DSM 13479] gi|288864254|gb|EFC96552.1| cysteine--tRNA ligase [Clostridium hathewayi DSM 13479] Length = 215 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 46/229 (20%) Query: 262 ANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 A W+HN FLN++ RKMSKS GNF T+ E+ E + V+R ML HYR P++ Sbjct: 1 AKYWMHNAFLNIDNRKMSKSLGNFFTVREISE-------KYDLSVLRFFMLSAHYRSPLN 53 Query: 322 FTVQRLTEA--------------EILLSKWPQTSTSKG----IIDPAVL---SALYNDLN 360 F+ + + + + L S+ S ++G +D V +A+ +D N Sbjct: 54 FSAELMESSKNGLERILTAVDKLKDLESRAVGDSFTEGESREAVDELVAKYEAAMDDDFN 113 Query: 361 TVSAIQALHKLAR--ESTKNHD--------LLPIFNASAHILGIEVCKEHLNKNISIAIE 410 T I A+ +L + ST D L +LGI E + + IE Sbjct: 114 TADGISAVFELVKLSNSTAGADSSKAYVVYLKETIEKLCDVLGI--VTEKKEEMLDSEIE 171 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +++ R K K F+ AD IR +L KG +LED + +WK+ Sbjct: 172 EMIAARQQARKDKNFALADEIRGKLLEKGIVLEDTREG------VKWKR 214 >gi|198413558|ref|XP_002119777.1| PREDICTED: similar to cysteinyl-tRNA synthetase, partial [Ciona intestinalis] Length = 336 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L R+ F + + ++ Y CGPTVYD +H+G+AR I FD+L R+L Y+G Sbjct: 32 LKLFNSLTRQKEVFIPENGNFVKWYSCGPTVYDASHMGHARSYISFDILRRVLMDYFGYN 91 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 V Y NITDIDDKII RAR + Sbjct: 92 -VLYCMNITDIDDKIITRARHNY 113 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%) Query: 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN--- 161 +++ +D L P R ++++P+++ ++ II +G+ Y++N + F S + Sbjct: 218 REYFEDMDALNVSPPDVLTRVSDYVPEIVKYVEEIIKNGYGYKSNGSVYFSVSQFDSSDD 277 Query: 162 ----------YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR 210 G + E + + + K+ P DF LWK S P EP WESPWG+ Sbjct: 278 HFYARLVPEAVGDLQALQEGEGSLSSVADQLNEKRAPNDFALWKASKPGEPSWESPWGK 336 >gi|289523838|ref|ZP_06440692.1| cysteine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502922|gb|EFD24086.1| cysteine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 134 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 8/95 (8%) Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DLIFPHHENEIAQ+ A ++ WIHNG+L + KMSKS GN +T+ E+ Sbjct: 1 GGSDLIFPHHENEIAQAEAATG-KQFVRFWIHNGYLLINKEKMSKSLGNILTVREI---- 55 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 +++ +RL +L HYR P+DF+ L +A Sbjct: 56 ---RKNFQPLAVRLFILAAHYRSPLDFSDDSLIQA 87 >gi|115753744|ref|XP_001191812.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115928438|ref|XP_001180238.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 163 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHP 88 + CGPTVYD AHIG+A + FD++ R+L ++ + V V ITDIDDKII R+ +++ Sbjct: 48 FACGPTVYDSAHIGHASSYVRFDIIRRILAEFF-QTSVVMVMGITDIDDKIIRRSHEQN- 105 Query: 89 SIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 + D + ++F +D L L R ++HIP+++ I NII +G+ Y Sbjct: 106 ---LKD-FRELAGFYEREFYQDMQHLNVLPANVYTRVSDHIPEILTFIDNIIRNGYGYST 161 Query: 149 NN 150 ++ Sbjct: 162 SS 163 >gi|225710076|gb|ACO10884.1| Cysteinyl-tRNA synthetase, cytoplasmic [Caligus rogercresseyi] Length = 122 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L ++ F S + Y CGPTVYD +H+G+AR + FD+L R++ Y+G Sbjct: 23 LSLYNSLTKRKEVF-VPRGSTVTWYNCGPTVYDASHMGHARTYLSFDILRRVMSKYFGYN 81 Query: 65 CVTYVRNITDIDDKIIERARQEH 87 + YV NITDIDDKII+R+RQ H Sbjct: 82 -IFYVMNITDIDDKIIKRSRQNH 103 >gi|33322800|gb|AAQ07135.1|AF496446_1 cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis] Length = 44 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 29/42 (69%), Positives = 33/42 (78%) Query: 201 EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 E W+SPWG+GRPGWHIEC+ MS+ YLG DIHGGG DL F Sbjct: 3 EIAWDSPWGKGRPGWHIECAVMSTKYLGDTLDIHGGGQDLEF 44 >gi|289811526|ref|ZP_06542155.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 70 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 48/71 (67%), Gaps = 2/71 (2%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR + G K Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYK 60 Query: 65 CVTYVRNITDI 75 + YVRNITDI Sbjct: 61 -LKYVRNITDI 70 >gi|62087208|dbj|BAD92051.1| cysteine-tRNA ligase isoform b variant [Homo sapiens] Length = 281 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIE 81 D + Y CGPTVYD +H+G+AR I FD+L R+L+ Y+ V Y NITDIDDKII+ Sbjct: 66 DGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFD-VFYCMNITDIDDKIIK 124 Query: 82 RARQEH 87 RARQ H Sbjct: 125 RARQNH 130 >gi|227885421|ref|ZP_04003226.1| conserved hypothetical protein [Escherichia coli 83972] gi|227837606|gb|EEJ48072.1| conserved hypothetical protein [Escherichia coli 83972] Length = 80 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 2/64 (3%) Query: 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 + MYVCG T+YD HIG+ R + FDV+ R LRY + YVRN+TD+DDKII RA + Sbjct: 2 VGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYL--GYSLNYVRNVTDVDDKIIRRAAE 59 Query: 86 EHPS 89 H + Sbjct: 60 NHET 63 >gi|225466980|ref|XP_002268953.1| PREDICTED: hypothetical protein, partial [Vitis vinifera] gi|225468419|ref|XP_002263606.1| PREDICTED: hypothetical protein, partial [Vitis vinifera] Length = 78 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNT+ ++ + + + MYVCG T YD +H+G+ R + FDVLYR L++ E Sbjct: 6 ELRVYNTMTQQKEILKPVVDGKVSMYVCGVTAYDLSHLGHGRAAVSFDVLYRYLQHLGYE 65 Query: 64 KCVTYVRNITDIDDK 78 VTYVRN TD+DDK Sbjct: 66 --VTYVRNFTDVDDK 78 >gi|190409217|gb|EDV12482.1| hypothetical protein SCRG_03371 [Saccharomyces cerevisiae RM11-1a] Length = 123 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +K+YN+L R EF + + Y CGPTVYD +H+G+AR + D+ R+++ Y+G Sbjct: 23 LKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVSIDINRRIIQDYFGY 82 Query: 64 KCVTYVRNITDIDDKIIERARQEH 87 V +V+N+TDIDDKII RARQ + Sbjct: 83 D-VQFVQNVTDIDDKIILRARQNY 105 >gi|256828837|ref|YP_003157565.1| cysteine synthase [Desulfomicrobium baculatum DSM 4028] gi|256578013|gb|ACU89149.1| cysteine synthase [Desulfomicrobium baculatum DSM 4028] Length = 768 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 105/456 (23%), Positives = 173/456 (37%), Gaps = 65/456 (14%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 ++ GP++ D + R ++ DVL + L + V + D+DD+ + AR+ Sbjct: 330 LFTPGPSLDDLGELDVWRRIVWLDVLAKAL--VERGQSVRLAVGLADMDDRALAAAREAK 387 Query: 88 PSIPIND----AISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG 143 I + D A + + V DT L LA Q RA + L + +++ G Sbjct: 388 --IGLQDFGLRAREFMLAHAKALGVSDTV-LFPLAGASQERA-------LGLARKLLVKG 437 Query: 144 HAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPADFILWKRST---- 198 AYE + FD + YG S +G V Y K NPADF L KR+T Sbjct: 438 QAYEKLRSVYFDVTRDKTYGQISCVDTAGMNLGYTVDLADYVKDNPADFTLLKRATLQDL 497 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 + E+ WG+ RP W ++ +A + LG V + FPH +N A + Sbjct: 498 KLGDVIETEWGKVRPSWFLQLAATALDALGSV-SVMFAAESHRFPHLDNFSAIWSAGAGV 556 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFI-TINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 A W+ + + + G + ++ E LE G P +RL +L Y Sbjct: 557 RPMA--WMVSQPVT------PREPGEAVPSLAEALEIAGTG------PALRLWLLSASYL 602 Query: 318 EPIDFTVQ----------RLTEAEILLSKWPQTSTSKGIIDPAV-------LSALYNDLN 360 + + ++ + RL +A + S + ++ A+ +AL ++L+ Sbjct: 603 KSLAYSPESLVMWVKNQNRLQDAYVSASLGGAGTGVSAELEQAIYDLKTAFATALDDNLD 662 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLN-----------KNISIAI 409 AL A+ + A+ + C L K+ Sbjct: 663 LAHFWPALFAFAKTVNSRAGKMSTDEAALVAEQLLACDRVLGYLDHARLPLAEKSWPREA 722 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 LV R K K F AD +R +L G LED+ Sbjct: 723 ADLVGRREEARKAKDFVRADALRAELAGMGLRLEDH 758 >gi|317154053|ref|YP_004122101.1| cysteine synthase [Desulfovibrio aespoeensis Aspo-2] gi|316944304|gb|ADU63355.1| cysteine synthase [Desulfovibrio aespoeensis Aspo-2] Length = 771 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 112/480 (23%), Positives = 187/480 (38%), Gaps = 96/480 (20%) Query: 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 + +Y GP + + + R ++V DVL R LR E ++D+DD+ + A Sbjct: 319 GGLGLYTMGPNLDNPDGLDAWRRVVVLDVLARHLRSLGVETRAAV--GLSDMDDRTLTAA 376 Query: 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ-------PRATNHIPQMIYLI 136 R DA + + + + + R +A P ++N + + L Sbjct: 377 RH-------TDADRAVFAAGLRARIMERARDMGVAVAGGDGAGVDFPLSSNSEGKALELC 429 Query: 137 QNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPADFILWK 195 + ++ G AYE + FD YG +D+ G V + Y K NP DF L K Sbjct: 430 RKLLGKGLAYEKLRSVYFDIFRDKRYGEIGAMDMDKVSGGRTVDLDAYVKDNPLDFTLLK 489 Query: 196 RSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 R+T ++ E+ WG RP W ++ +A + L ++ D+ G FPH EN A Sbjct: 490 RATLLDLKRGEVLETEWGNVRPSWFLQHAATALTSLPRI-DVMIGSEKHRFPHLENLRAI 548 Query: 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 A R W+ N + ++ T+ + L + R W + Sbjct: 549 WSAAGR---ELQAWLLN------HQATDCADATLTTVADTLGGFR-AARFW--------L 590 Query: 312 LMTHYREPI----DFTV------QRLTEAEILLSKWPQTSTS---------KGIIDPAVL 352 L + R+P+ D V +R+ EA LS P+T + G D AV Sbjct: 591 LSSACRKPLCASSDNLVMWARNWRRVQEALAALSA-PRTGAAPSGESAGKIPGEADQAVF 649 Query: 353 -------SALYNDL----------------NTVSAIQALHKLARESTKNHDLLPIFNASA 389 +A+ DL N +A AL A + + L A Sbjct: 650 DLRAGFKTAMNEDLALHRFWPVLFRFVKQVNAWAAAGALTGPAASACLDELL-----AVD 704 Query: 390 HILGIEVCKEHLN-----KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ILGI +H ++ I ++ ++ +R + K F+++D +R Q+ + GF LED Sbjct: 705 AILGI---LDHAQMPLPLADLPIEVQGMLADRQKAREAKDFAASDALRDQIANAGFRLED 761 >gi|156349415|ref|XP_001622048.1| hypothetical protein NEMVEDRAFT_v1g15338 [Nematostella vectensis] gi|156208453|gb|EDO29948.1| predicted protein [Nematostella vectensis] Length = 136 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 4/68 (5%) Query: 23 PSNIRM---YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 PSN R Y CGPTVYD +H+G+AR I FD++ R+L+ Y+ V V N+TDIDDKI Sbjct: 9 PSNGRRVTWYSCGPTVYDASHMGHARSYITFDIVRRVLQSYFNYD-VFCVMNVTDIDDKI 67 Query: 80 IERARQEH 87 I RAR+ H Sbjct: 68 IHRARRNH 75 >gi|119384075|ref|YP_915131.1| cysteinyl-tRNA synthetase-like [Paracoccus denitrificans PD1222] gi|119373842|gb|ABL69435.1| Cysteinyl-tRNA synthetase-like protein [Paracoccus denitrificans PD1222] Length = 124 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 9 NTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 N+L + F +P +R+YVCGPTVYD+AHIGNARP +VFDVL R+ R Y ++ + Sbjct: 7 NSLGGEKQPFIPRNPREVRIYVCGPTVYDYAHIGNARPAVVFDVLVRVFRLSYPQQAL 64 >gi|242280324|ref|YP_002992453.1| cysteine synthase [Desulfovibrio salexigens DSM 2638] gi|242123218|gb|ACS80914.1| cysteine synthase [Desulfovibrio salexigens DSM 2638] Length = 764 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 24/238 (10%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 +I + ++ GP+ + R +++ DVL R L G K V+ + + D++D+ Sbjct: 318 SISEAETGLFTMGPSFDNPYDPEVFRRIVLLDVLARHLERE-GAK-VSALVGLADLEDQT 375 Query: 80 IERARQ-----EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIY 134 + +R+ E S I A+ K L RA+ + + + Sbjct: 376 LAASRERGVDRETFSTEIATAVR-----------KAAYLLGVRKSMRFERASESVDRTVE 424 Query: 135 LIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPADFIL 193 L + ++ HG AYE + FD S YG S ID+ +G V + Y K+NP DF L Sbjct: 425 LCRALLAHGLAYEKLRSVYFDISRDKGYGQMSNMDIDKVSLGKTVDMDDYVKENPRDFTL 484 Query: 194 WKRSTPMEPGW----ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 KR+T + E+ WG RP W ++ + + L V + G + FPH EN Sbjct: 485 LKRATLQDLKLGDIIETEWGNVRPSWFMQQAVTALEGLPGVSLVLAGEIHR-FPHLEN 541 >gi|317145384|ref|XP_003189699.1| hypothetical protein AOR_1_280144 [Aspergillus oryzae RIB40] Length = 296 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 3/75 (4%) Query: 15 ITEFQAIDPSNIRM--YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNI 72 IT F A+DP ++ Y CGPTVYD AH+G+AR D++ R+L+ Y+ + V +V NI Sbjct: 3 ITPFIALDPKGRKVTWYACGPTVYDDAHLGHARNYASTDIIRRILKDYF-KFDVEFVMNI 61 Query: 73 TDIDDKIIERARQEH 87 TD+DDKII R Q+H Sbjct: 62 TDVDDKIIVRGWQQH 76 >gi|170694948|ref|ZP_02886097.1| Cysteine--tRNA ligase [Burkholderia graminis C4D1M] gi|170140046|gb|EDT08225.1| Cysteine--tRNA ligase [Burkholderia graminis C4D1M] Length = 206 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 39/219 (17%) Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQ 325 +HNG++ ++ KMSKS NF TI E+L + A V+R + HYR P++++ Sbjct: 1 MHNGYVQIDNEKMSKSLNNFFTIREVLA-------QYDAEVVRFFIARAHYRSPLNYSDV 53 Query: 326 RLTEAEILLSKWPQTSTSKGIIDPAVL-----------SALYNDLNTVSAIQALHKLARE 374 + +A L + T+ D A L +A+ +D NT A+ L +LA E Sbjct: 54 HIDDARNALGRL-YTALKDVTPDGAALDWNEAHAQRFQAAMNDDFNTPVAVSVLFELATE 112 Query: 375 STKNHD-----LLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQ---------ERLILL 420 + D L A +LG E + +L + A+E ++ ER+ Sbjct: 113 VNRTRDPALARQLRSLGAVLGLLGRE-PRAYLQQAAGAAVEGALEPAAIEAKIAERVAAK 171 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + K +++AD IR +L G LED P +T W++ Sbjct: 172 QAKDYAAADRIRAELLEAGVALED--KPGG---LTEWRR 205 >gi|311266558|ref|XP_003131141.1| PREDICTED: hypothetical protein LOC100515683 [Sus scrofa] Length = 283 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 46 VKVYNSLTRRKDPLIVSSADAASWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFGCS 105 Query: 65 CVTYVRNITDIDDKIIERARQ 85 V V +TD+DDKII+RA + Sbjct: 106 -VVMVMGVTDVDDKIIKRANE 125 >gi|323700693|ref|ZP_08112605.1| cysteine synthase [Desulfovibrio sp. ND132] gi|323460625|gb|EGB16490.1| cysteine synthase [Desulfovibrio desulfuricans ND132] Length = 759 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 18/226 (7%) Query: 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC-VTYVRNITDIDDKIIERARQEH 87 Y GP++ + + + R +++ DV LR+ G + V +TD+DD+ + AR+ Sbjct: 324 YTMGPSLDNPDGLDSWRRLVLLDVF---LRHLAGRGVKASGVAGLTDMDDRTLAAAREAD 380 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ-PRATNHIPQMIYLIQNIILHGHAY 146 D S+ S+ + R L+ + P ++ + L + ++ G AY Sbjct: 381 -----TDRASLAESRREDILAR--GRAMGLSDELKFPLSSASNETALSLCRKLLGKGLAY 433 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPADFILWKRSTPME---- 201 E + FD YG +D+ G V + Y K NP DF L KR++ M+ Sbjct: 434 EKLRSVYFDVFRDKRYGEIGTVDMDKVSGGRTVDLDAYVKDNPLDFTLLKRASLMDLKRG 493 Query: 202 PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 E+ WG RP W ++ +AM+ L + D+ G FPH EN Sbjct: 494 EVLETQWGNVRPSWFLQHAAMALDELPRT-DVMIGSDKHRFPHLEN 538 >gi|296825514|ref|XP_002850827.1| cysteinyl-tRNA synthetase [Arthroderma otae CBS 113480] gi|238838381|gb|EEQ28043.1| cysteinyl-tRNA synthetase [Arthroderma otae CBS 113480] Length = 601 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 55/291 (18%) Query: 91 PINDAISIITSKNTQ----QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 PI SI ++ T+ +F+ D L L P R ++P+++ + + L Sbjct: 156 PICCGSSICSTTLTKHYESRFIGDIRSLNVLNPDELTRVVAYVPEILCFLLRVGL----- 210 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 I S+ N+ + K++ + + + K F+ +K +E G+ + Sbjct: 211 -----FILILISLRNHYA----KLEHRNRNNTSSDGWRK-----FLTFKEFCALE-GFPA 255 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 G PGWHIECSAM+S LG DI+ G+DL F HH+NE+AQ+ E + W Sbjct: 256 R-GTKLPGWHIECSAMTSAKLGNHMDINSRGIDLAFSHHDNEVAQN------EVFSLHWA 308 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 +L + ++ F TI E+L + + +RE I+ T Sbjct: 309 -----SLIQAQRAQITPKFTTIREVLARSTI-------------IFLGGWREGIEITTDM 350 Query: 327 LTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK 377 + + I K + + SAL N +T +A+ A+ +LA T+ Sbjct: 351 VDTSGIREEKL------NNFLKDKIFSALCNLFDTPTAMNAILELASSFTR 395 >gi|326473872|gb|EGD97881.1| hypothetical protein TESG_05385 [Trichophyton tonsurans CBS 112818] Length = 306 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 5 IKIYNTLERKITEFQAID--PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I+++L R T F +D ++ + CGPTVYD A G+AR ++ D+ R++R Y+ Sbjct: 26 LRIWSSLTRSETAFIPVDYVGKSVTWHTCGPTVYDNAQSGHARNYVITDIPPRIMRDYFK 85 Query: 63 EKCVTYVRNITDIDDKIIERARQEH 87 V ++ NI D+DDK+I R RQ+H Sbjct: 86 FN-VKFIMNIADVDDKVISRVRQQH 109 >gi|207109337|ref|ZP_03243499.1| cysteinyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1] Length = 65 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 42/61 (68%), Gaps = 2/61 (3%) Query: 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPS 89 +CGPTVYD AH+G+AR I FD+L R L E V VRN TDIDDKII +A +E+ S Sbjct: 1 MCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYE--VVLVRNFTDIDDKIINKALKENKS 58 Query: 90 I 90 I Sbjct: 59 I 59 >gi|258404957|ref|YP_003197699.1| cysteine synthase [Desulfohalobium retbaense DSM 5692] gi|257797184|gb|ACV68121.1| cysteine synthase [Desulfohalobium retbaense DSM 5692] Length = 764 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 104/466 (22%), Positives = 185/466 (39%), Gaps = 74/466 (15%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 + + + ++ GP + R ++ D+L R LR+ E V V + D D+ + Sbjct: 321 VQKNALGVFTPGPGPEELEQPELWRRLVWADILVRYLRHKDFE--VHGVVGLADWDEHLS 378 Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNII 140 A Q+ ++ + ++ + + T C A + Q R T + L + ++ Sbjct: 379 HLAEQQGCNLQEMRGAMLDRAEALLRRLGLETGWHCQAAS-QCRETQ-----LALCRELV 432 Query: 141 LHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPADFILWKRS-- 197 G YE + +D +YG R + + +G V ++Y K NP DF L KR+ Sbjct: 433 RKGLGYEKLRSVYYDVGRDTDYGVLRRTDLAKLSLGKTVDLDRYAKDNPRDFTLLKRTNL 492 Query: 198 TPMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 ++ G W++ WG RP W+++ +A + G D+ G FPH EN A Sbjct: 493 ADLKRGDFWKTEWGNVRPSWYLQMAAAALAE-GIAMDVVLAGRAHHFPHMENLRALWAVR 551 Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKS-NGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 + + + +W+ M+++ G I + +++ GG +RL +L Sbjct: 552 NALPQ---VWL-----------MTQAVEGEAIVPDIETASERLGGMH----ALRLWLLSG 593 Query: 315 HYREPIDFTV----------QRLTEAEILLSKWPQTSTSKGIIDPAVLSALY-------- 356 YR+P+ + +RL E+ L G +DP LY Sbjct: 594 GYRKPLHSSEDNATMWRRNWERLQESVATLHV---ARGEGGQVDPGFEQTLYDVKTMFWD 650 Query: 357 ---NDLNTVSAIQALHKLARESTKNHD---LLPIFNASA--------HILGIEVCKEHLN 402 +DL+ L L R K L P+ A ILG V H Sbjct: 651 QLEDDLDLQHFWPVLWSLCRTILKKASQGRLAPVEAARGWKLVTDLDTILG--VVDWHTL 708 Query: 403 KNISIAIEKLVQERLILLKMKK----FSSADYIRKQLESKGFILED 444 + V++R+ L + + F+ AD +R+++ +KG+ LED Sbjct: 709 PLRQDQWPEGVRDRIALREQARRDRDFARADLLRQEIVAKGYRLED 754 >gi|289607157|emb|CBI60873.1| unnamed protein product [Sordaria macrospora] Length = 114 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 5 IKIYNTLERKITEFQAIDPSN-IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 + ++N+L R F+ +DP +R+Y CGPTVY++AHIGN R + D L R+LR + Sbjct: 46 LTLHNSLTRSPQRFEPLDPEKGVRVYSCGPTVYNYAHIGNLRAYVFTDTLSRVLR--WKG 103 Query: 64 KCVTYVRNITD 74 +T+V NITD Sbjct: 104 YALTHVINITD 114 >gi|12846272|dbj|BAB27101.1| unnamed protein product [Mus musculus] Length = 143 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++N+L + + Y CGPTVYD AH+G+A + FD++ R+L +G Sbjct: 37 VQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIRRILTRVFG-- 94 Query: 65 C-VTYVRNITDIDDKIIERARQ 85 C V +ITD+DDKII+RA + Sbjct: 95 CNVVMAMSITDVDDKIIKRANE 116 >gi|298528121|ref|ZP_07015525.1| cysteine synthase B [Desulfonatronospira thiodismutans ASO3-1] gi|298511773|gb|EFI35675.1| cysteine synthase B [Desulfonatronospira thiodismutans ASO3-1] Length = 776 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 106/493 (21%), Positives = 195/493 (39%), Gaps = 84/493 (17%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+ +RK Q ++ GP F R + DVL R L + Sbjct: 302 IKIYDLQKRKKAVLQC-SGKKPGIFTPGPRTNFFQDPDFWRRAVFLDVLCRRLAQKGHDP 360 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + D DD+ +E R++ S ++ + ++ +K L Sbjct: 361 --NPVAAVADFDDRTLECMREKGVSREDFSRETLDSIRDLAGRIKLNRNFNFLP------ 412 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM--GTRVP-E 181 A + I + ++ G AYE + FD +YG + ID +K+ G V E Sbjct: 413 AAGSLDTGIEMCNKLLSRGLAYEKLRCVYFDVGRDRDYGLLA--GIDPEKIISGKTVDLE 470 Query: 182 KYHKKNPADFILWKRST----PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 Y K +P DF L KR++ E ++ WG RP W+++ +A+++ G + D+ G Sbjct: 471 DYVKDSPRDFTLLKRASLKDLKEENVLKTKWGNVRPSWYLQMAAVAAENAGHL-DLVMAG 529 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMS-----KSNGNFI-TINEL 291 +FPH +N ++ IW + L + ++ + G + I E+ Sbjct: 530 EAHLFPHLDNLLS-------------IWKGSTSLRPQCWSLALPVHHQEKGEPLPGIQEM 576 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------- 337 ++ GG +R+ ++ Y P+ F+ + L E+ + W Sbjct: 577 --AREMGGFH----PLRMWLMSVSYHRPLMFSPKNL---EMWVKNWKRLQELMGKLKICA 627 Query: 338 ----PQTSTSKGI------IDPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIF 385 P T + + PA+ L +DL L + R+ K + +L+ + Sbjct: 628 RGTRPDKETGSEVEKQCRELGPALSGCLDDDLALYKFWPQLFEFCRKMQKLLDENLMDVR 687 Query: 386 NASA---HILGIEVCKEHLN--------KNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +A + H+ G++ + ++ + I +L+Q R + K F +AD +R + Sbjct: 688 DAGSCLHHLQGLDSILKIIDWQALPLAENEYPVQISELLQARARAKEAKDFVAADELRDR 747 Query: 435 LESKGFILEDYKN 447 S GF L D ++ Sbjct: 748 ALSSGFRLVDTRD 760 >gi|303249135|ref|ZP_07335375.1| cysteine synthase [Desulfovibrio fructosovorans JJ] gi|302489460|gb|EFL49407.1| cysteine synthase [Desulfovibrio fructosovorans JJ] Length = 767 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 96/462 (20%), Positives = 171/462 (37%), Gaps = 60/462 (12%) Query: 21 IDPSNIR--MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDK 78 +DP+ ++ GP + + R ++ DVL R L G + + D++D+ Sbjct: 317 LDPAGATPGLFTFGPPLAAPGDLDAWRRVVTLDVLRRTLARGGGRPVLAV--GLADLEDR 374 Query: 79 IIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQN 138 ++ +R + + +K Q L +A P A + + + + + Sbjct: 375 CLDASRAA--GVKCRE----FAAKARDQVAARAAALG-VADARFPLAGEALDEALAMTRK 427 Query: 139 IILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-KYHKKNPADFILWKRS 197 ++ G AYE + FD + YG + + +G V Y K NP DF L KR Sbjct: 428 LMSKGLAYEKLRSVYFDVARDKAYGGLLGTDMTKLALGKTVDLLAYAKDNPQDFTLLKRV 487 Query: 198 T--PMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSC 253 + ++ G +PWG RP W ++ +A + L V + D FPH EN A Sbjct: 488 SLKDLKAGDALSTPWGNVRPSWFLQMAAAAVKALPAVTVVL-TDEDKTFPHLENLRAIWS 546 Query: 254 CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 + A W+ G + GR+ ++ + L R+W +L Sbjct: 547 VGAGLSPAA--WLVGG--RVAGREGEEAGAADLADLLALGVHPLAVRAW--------LLS 594 Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------------AVLSAL 355 YR+P+ + L E ++ + + + G+I ++ +A+ Sbjct: 595 VGYRKPLCAVPEALRMWEKNRNRVQELAANLGLIAAGGGKASDTVAAEAEKLTQSLDAAV 654 Query: 356 YNDLNTVS---AIQALHKLARESTKNHDLLP--------IFNASAHILGI--EVCKEHLN 402 +DL + A + A L P ++ +LG+ C Sbjct: 655 ADDLAVFQFWPQLFAFCRFANGLIAAGSLTPADAARLAGALGSADGVLGLLDPACLPVAT 714 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + KLV R K F AD IR +E G+ +ED Sbjct: 715 REWPAPVAKLVAAREQARNAKDFGKADAIRSDIEGLGYRVED 756 >gi|239907708|ref|YP_002954449.1| cysteine synthase B [Desulfovibrio magneticus RS-1] gi|239797574|dbj|BAH76563.1| cysteine synthase B [Desulfovibrio magneticus RS-1] Length = 773 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 31/241 (12%) Query: 21 IDPSNIR--MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDK 78 +DP+ ++ GP + + + R ++ DVL R L G T + D+DD+ Sbjct: 317 LDPAAAAPGLFTFGPPLPEPGDLDAWRRIVTLDVLRRTLSRSGGRP--TLAVGLADLDDR 374 Query: 79 IIERARQEHPSIPINDAISIITSKNTQQFVKDT-TRLACLAPTHQ------PRATNHIPQ 131 ++ +R + +++ + ++A LA + P A + + Sbjct: 375 CLDASRA--------------AGRKCREYAAEAREQVAALAESLGVADAVFPLAGEAMDE 420 Query: 132 MIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP-EKYHKKNPAD 190 + L + ++ G AYE + FD + YG + + +G V + Y K +P D Sbjct: 421 AMALARKLMDKGLAYEKLRSVYFDVARDKAYGGLLGLDMTKLCLGKTVDLDSYAKDHPRD 480 Query: 191 FILWKRST--PMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 F L KR + ++ G W + WG RP W ++ ++ + L V + D FPH E Sbjct: 481 FTLLKRVSLKDLKAGDVWATAWGNVRPSWFLQMASAAVRALPAV-TVVATDEDKTFPHIE 539 Query: 247 N 247 N Sbjct: 540 N 540 >gi|323141394|ref|ZP_08076285.1| DALR domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414143|gb|EFY04971.1| DALR domain protein [Phascolarctobacterium sp. YIT 12067] Length = 214 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 51/211 (24%) Query: 278 MSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 MSKS GNF + ++LE + +R ++ THYR P+DF+ RLTEA+ L++ Sbjct: 1 MSKSLGNFFMVIDILE-------HYDPETLRFFIVSTHYRSPLDFSDARLTEAQKSLARL 53 Query: 338 PQTSTSKGIID----------------------PAVLSALYNDLNTVSAIQALHKLARES 375 Q + G + A + A+ +D NT AI + LA+E Sbjct: 54 RQAQETLGELSEMLSAGPTAESLALREKVKELREAFMEAMRDDFNTALAISHMFALAKEI 113 Query: 376 TKNH------------DLLPIFN----ASAHILGI------EVCKEHLNKNISIAIEKLV 413 H L+ +FN + I+G+ +E + + +E L+ Sbjct: 114 NIYHKAVVDAGIKPDGKLVAMFNDVFAETCSIIGVLEKTAAPAAEEAGDSKEAELVEMLI 173 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILED 444 R K K ++ AD +R +L G +L+D Sbjct: 174 AMRQDARKNKNYALADELRNKLNEIGIVLQD 204 >gi|218678400|ref|ZP_03526297.1| cysteinyl-tRNA synthetase [Rhizobium etli CIAT 894] Length = 117 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 47/113 (41%), Positives = 73/113 (64%) Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI 407 D VL+AL +DLNTV+A+QALH LA+ + + F A+A +LG+ K +++ ++ Sbjct: 4 DETVLNALADDLNTVAAVQALHALAQAAHSDPAAAARFAATASLLGLLPKKAEIDEAVAA 63 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 A++ LV RL +LK K F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 64 AVDALVAMRLEMLKAKNFAEADKIRDELTAKGIQLKDGKDAATGERVTTWEVK 116 >gi|242036955|ref|XP_002465872.1| hypothetical protein SORBIDRAFT_01g047370 [Sorghum bicolor] gi|241919726|gb|EER92870.1| hypothetical protein SORBIDRAFT_01g047370 [Sorghum bicolor] Length = 94 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 12/65 (18%) Query: 4 KIKIYNTLERKITEFQ-----------AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDV 52 ++K++N++ R+ FQ A+D + MYVCG T YDF H+GN R +VFDV Sbjct: 9 QLKLFNSMTRRKEPFQPASSRKEPFQPAVD-GKVTMYVCGVTPYDFCHMGNGRAFVVFDV 67 Query: 53 LYRLL 57 LYR L Sbjct: 68 LYRYL 72 >gi|225464766|ref|XP_002265714.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 58 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRL 56 ++++YNT+ ++ F+ + + MYVCG T YD +H+G+AR + FDVLYR Sbjct: 6 ELRVYNTMTQQKEIFKPVVDGKVSMYVCGVTAYDLSHLGHARAAVCFDVLYRF 58 >gi|25395240|pir||A87730 protein Y23H5A.1 [imported] - Caenorhabditis elegans Length = 230 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++ +YN+L R+ F + + + Y+CGPTV D +H+G+AR + D+L R+ R Y+G Sbjct: 97 QLTVYNSLTRQKEVFVPNEGARVGWYICGPTVNDSSHMGHARSYLSLDILRRVFRDYFGY 156 Query: 64 KCVTYVRNITD 74 V ++ NITD Sbjct: 157 D-VEFIMNITD 166 >gi|332703394|ref|ZP_08423482.1| cysteine synthase [Desulfovibrio africanus str. Walvis Bay] gi|332553543|gb|EGJ50587.1| cysteine synthase [Desulfovibrio africanus str. Walvis Bay] Length = 779 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 84/368 (22%), Positives = 140/368 (38%), Gaps = 57/368 (15%) Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 H A + + L + ++ G AYE + +D YG ++ +G V Sbjct: 415 VHFALAGESTERALTLCRRLLARGLAYEKLRSVYYDVLRDKAYGQTGSMDLERLSLGKTV 474 Query: 180 PEK-YHKKNPADFILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 + Y K NP DF L KR T + E+ WG+ RP W ++ +A + L + Sbjct: 475 DLRDYVKDNPRDFTLLKRVTLQDLKAGDALETEWGKVRPSWFLQQAAAALDGL-PALSVA 533 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN----GFLNLEGRKMSKSNGNFITINE 290 G FPH EN A + TA W+ G L+ G + E Sbjct: 534 LGAETHRFPHLENFRAIWTLGAGVVPTA--WLVAQPVIGVLDSAGADAPGVQQPVFGLRE 591 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV--------QRLTEAEILLSKW----- 337 + G +R+ +L T Y +P+ ++ E + LS Sbjct: 592 AVGAVSSGA------ALRMWLLSTSYHKPLSLQSLPMWSRNWRKTQELYVTLSSAERKKG 645 Query: 338 -PQTSTSKGIID--PAVLSALYNDLN-------------TVSAIQALHKLARESTKNHDL 381 P + ++ D + +A+ +DL+ T++A A+ +L+ T+ Sbjct: 646 EPGQAVAQAAYDLRQGLFAAVEDDLSLHRFWPELFKFVRTINAKLAVGQLSGAGTEL--C 703 Query: 382 LPIFNASAHILGIEVCKEHLNKNISIA-----IEKLVQERLILLKMKKFSSADYIRKQLE 436 L A +LGI +H +S + + +LV+ R K F AD +R +L Sbjct: 704 LRRLTACDQVLGI---LDHSQAPVSPSMLTAELAELVRLREEARGRKDFPQADDLRGRLW 760 Query: 437 SKGFILED 444 KG+ LED Sbjct: 761 EKGYRLED 768 >gi|255018804|ref|ZP_05290930.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL F2-515] Length = 207 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 48/206 (23%) Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA---- 330 G+K SKS GNFIT++++L + VIR ML HYR+PI L +A Sbjct: 3 GKKXSKSLGNFITLHDVL-------KDNDPNVIRFFMLSVHYRKPITLNDAILEDAKNGL 55 Query: 331 -----------------------EILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQA 367 E+ +W + T + A + +D NT +AI Sbjct: 56 ERLMIAYQNIDHRIQTDDGEYVEEVHEDEWLEQLTE---LKQAFEDDMDDDFNTANAITT 112 Query: 368 LHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQER 416 H+LA+ + + L + A +LG+++ + +E L++ER Sbjct: 113 FHELAKRANIYLAKETVSINVLREFLSMMRLFAEVLGLKLENTQSDSLDDSEVEALIEER 172 Query: 417 LILLKMKKFSSADYIRKQLESKGFIL 442 L + F+ AD IR L+ K + L Sbjct: 173 LQARNERNFARADEIRDILKRKKYYL 198 >gi|239610479|gb|EEQ87466.1| cysteinyl-tRNA synthetase [Ajellomyces dermatitidis ER-3] Length = 279 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 12/92 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRM--YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YN+L R F DP R+ Y CGPTVYD AH+G+ R + D++ R+++ Y+ Sbjct: 24 LKMYNSLTRSKNAFIPKDPEGHRVTWYSCGPTVYDDAHLGHPRNYVTTDIIRRIMQDYFH 83 Query: 63 EKCVTYVRN---ITD-------IDDKIIERAR 84 + R I+D +DD +++ AR Sbjct: 84 FNIIVRARQQHLISDYVAKHPVVDDHVVKTAR 115 >gi|327349091|gb|EGE77948.1| hypothetical protein BDDG_00885 [Ajellomyces dermatitidis ATCC 18188] Length = 284 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 12/92 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRM--YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YN+L R F DP R+ Y CGPTVYD AH+G+ R + D++ R+++ Y+ Sbjct: 24 LKMYNSLTRSKNAFIPKDPEGHRVTWYSCGPTVYDDAHLGHPRNYVTTDIIRRIMQDYFH 83 Query: 63 EKCVTYVRN---ITD-------IDDKIIERAR 84 + R I D +DD +++ AR Sbjct: 84 FNIIVRARQQHLIADYVAKHPVVDDHVVKTAR 115 >gi|283853744|ref|ZP_06370971.1| cysteine synthase [Desulfovibrio sp. FW1012B] gi|283570868|gb|EFC18901.1| cysteine synthase [Desulfovibrio sp. FW1012B] Length = 767 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 31/241 (12%) Query: 21 IDPSNI--RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDK 78 +DP+ ++ GP + + + R ++ DVL R L G T + D++D+ Sbjct: 317 LDPAGAVPGLFTFGPPLAEPGDLDAWRRVVTLDVLRRALSR--GPARPTLAVGLADLEDR 374 Query: 79 IIERARQEHPSIPINDAISIITSKNTQQFVKDT-TRLACLAPTHQ------PRATNHIPQ 131 ++ AR + + F + TR+A A P A + + Sbjct: 375 SLDAARA--------------AGQKCRDFAEAARTRVAGYAGLLGVSGAVFPLAGEALDE 420 Query: 132 MIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-KYHKKNPAD 190 + L + ++ G AYE + FD + YG + + +G V Y K NP D Sbjct: 421 ALALTRKLMGKGLAYEKLRSVYFDVARDKAYGRLLGTDMTKLALGKTVDLLAYAKDNPQD 480 Query: 191 FILWKRST--PMEPG--WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 F L KR + ++ G + WG RP W ++ +A ++ L V + D FPH E Sbjct: 481 FTLLKRVSLKDLKAGDALATTWGNVRPSWFLQMAAAAAQALPAVTVVL-TDEDKTFPHLE 539 Query: 247 N 247 N Sbjct: 540 N 540 >gi|300813898|ref|ZP_07094202.1| DALR domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511961|gb|EFK39157.1| DALR domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 189 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 34/181 (18%) Query: 299 GRSWPAPVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID 348 + + ++R +L T YR PI+F+ ++RL A+ L K + S + + + Sbjct: 2 SKEYDLEILRFFLLTTSYRAPINFSREVMNQTKNALERLYNAKYKLEKDIELSKERALTE 61 Query: 349 P-------------AVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIF 385 + A+ +DLNT AI A+ L ++ N D + + Sbjct: 62 DEKKIEEKFQTHRQSFEKAMEDDLNTADAITAIFDLVKDINVNLDENSAKKLLEEGMSLL 121 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 ILGI + +E ++ I L++ER K K F AD IR +L KG ++D Sbjct: 122 KTLTKILGI-MEREKNCDDLDEEILNLIKEREDARKNKDFKRADEIRDELLEKGIEIKDT 180 Query: 446 K 446 + Sbjct: 181 R 181 >gi|218458260|ref|ZP_03498351.1| cysteinyl-tRNA synthetase [Rhizobium etli Kim 5] Length = 90 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 46/70 (65%) Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ K +++ ++ A++ LV RL +LK K F+ AD IR +L +KG L+D K+P Sbjct: 20 LLGVLPKKAEIDEAVAAAVDALVAMRLEMLKAKNFAEADNIRDELTAKGIQLKDGKDPVT 79 Query: 451 GQRMTRWKQK 460 G+R+T W+ K Sbjct: 80 GERVTTWEVK 89 >gi|298204804|emb|CBI25637.3| unnamed protein product [Vitis vinifera] Length = 85 Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIE 218 ++ K G RV K+NPA+F+LWK P E ++PW PG H+E Sbjct: 24 LENNKAGERVDVDSRKRNPAEFVLWKNVRPGESSQDNPWDFKIPGRHVE 72 >gi|156053840|ref|XP_001592846.1| hypothetical protein SS1G_05768 [Sclerotinia sclerotiorum 1980] gi|154703548|gb|EDO03287.1| hypothetical protein SS1G_05768 [Sclerotinia sclerotiorum 1980 UF-70] Length = 404 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTS 157 +T K +F +D L LAP H R T ++PQ++ I+ I+ +G Y + + FD Sbjct: 134 LTQKFEHRFFEDMNALNVLAPDHITRVTEYVPQIVPFIEKIVANGFGYATPDGSVYFDID 193 Query: 158 SIPNYG-SFSR 167 S G S+SR Sbjct: 194 SFEKAGHSYSR 204 >gi|153827624|ref|ZP_01980291.1| cysteinyl-tRNA synthetase [Vibrio cholerae MZO-2] gi|149737896|gb|EDM52801.1| cysteinyl-tRNA synthetase [Vibrio cholerae MZO-2] Length = 191 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 36/204 (17%) Query: 280 KSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 KS GNF TI ++L + A +R ++ HYR ++++ + L +A L + Sbjct: 1 KSLGNFFTIRDVLG-------HYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERLYI 53 Query: 340 TSTSKGIIDPAV---------LSALYNDLNTVSAIQALHKLARE--------STKNHDLL 382 PA +A+ +D NT A L +ARE T L Sbjct: 54 ALRGLDRSVPAAGGEEYVTRFTTAMNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALG 113 Query: 383 PIFNASAHILGI------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 + A ++GI + + IE L++ R K +++AD R +L Sbjct: 114 SLMRELADVIGILYQEPEAFFQGSAEDEDAAQIEALIKLRNDSRATKDWANADLARDKLN 173 Query: 437 SKGFILEDYKNPDNGQRMTRWKQK 460 G +LED G T W++K Sbjct: 174 EMGIVLED------GPNGTTWRRK 191 >gi|293376478|ref|ZP_06622707.1| valine--tRNA ligase [Turicibacter sanguinis PC909] gi|325842048|ref|ZP_08167585.1| valine--tRNA ligase [Turicibacter sp. HGF1] gi|292644900|gb|EFF62981.1| valine--tRNA ligase [Turicibacter sanguinis PC909] gi|325489770|gb|EGC92126.1| valine--tRNA ligase [Turicibacter sp. HGF1] Length = 878 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 17/138 (12%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGW-HIECSAMS 223 G ++P YHK+ PAD W + + W S W GW +EC Sbjct: 412 GHQIPAWYHKETGEMYVGEEAPADIENWNQDEDVLDTWFSSALWPFTTLGWPDVECEDFK 471 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +++ D G D+IF I QS N+ IH + EGRKMSKS G Sbjct: 472 AYFPT---DTLVTGYDIIFFWVSRMIFQSLEFTDERPFKNVLIHGLVRDAEGRKMSKSLG 528 Query: 284 NFITINELLETKKFGGRS 301 N + +++E K+G S Sbjct: 529 NGVDPMDVIE--KYGADS 544 >gi|238608061|ref|XP_002397132.1| hypothetical protein MPER_02496 [Moniliophthora perniciosa FA553] gi|215471001|gb|EEB98062.1| hypothetical protein MPER_02496 [Moniliophthora perniciosa FA553] Length = 169 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%) Query: 51 DVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 DV+ R++ Y+G V +V NITDIDDKII+RARQ H Sbjct: 1 DVIRRIMSDYFGYD-VHFVMNITDIDDKIIKRARQTH 36 >gi|296085084|emb|CBI28499.3| unnamed protein product [Vitis vinifera] Length = 78 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIE 218 ++ K G RV K+NPA+F+LWK P E ++PW PG H+E Sbjct: 17 LENNKGGERVDVDSRKRNPAEFVLWKNVRPSESSQDNPWDFKIPGRHVE 65 >gi|313611176|gb|EFR85996.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL F2-208] Length = 125 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 11/99 (11%) Query: 357 NDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNI 405 +D NT +AI H+LA+ + + L + A +LG+++ + Sbjct: 17 DDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLFAEVLGLKLENTQTDSLD 76 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +E L++ERL + F+ AD IR L+ K ILED Sbjct: 77 DSEVEALIEERLQARNERNFARADEIRDILKEKNIILED 115 >gi|330720057|gb|EGG98482.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC2047] Length = 182 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 46/187 (24%) Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV-------------L 352 V+R ++ +HYR I+++ + L +A+ L ++ T + + AV Sbjct: 8 VVRYFLISSHYRSAINYSEESLKQAQQALERFYNTLRNAQPSNEAVPVVESNTEFRIRFE 67 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLP----IFNASAHILGI-------------- 394 +A+ +D NT A+ L LARE + P + LGI Sbjct: 68 TAMNDDFNTPEALAVLFDLAREINRGGTSTPAQVELLKELGETLGILQQEPEAFLQGGDT 127 Query: 395 -EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 E+ E IE+L+ +R K ++ AD IR L KG +L D+G+ Sbjct: 128 GEISAEQ--------IEQLIIDRKNARSDKDWARADEIRDLLIEKGVVL------DDGRE 173 Query: 454 MTRWKQK 460 T W+++ Sbjct: 174 GTTWRRQ 180 >gi|19115794|ref|NP_594882.1| cytoplasmic leucine-tRNA ligase Lrs1 (predicted) [Schizosaccharomyces pombe 972h-] gi|1711638|sp|Q10490|SYLC_SCHPO RecName: Full=Putative leucyl-tRNA synthetase, cytoplasmic; AltName: Full=Leucine--tRNA ligase; Short=LeuRS gi|1314182|emb|CAA97370.1| cytoplasmic leucine-tRNA ligase Lrs1 (predicted) [Schizosaccharomyces pombe] Length = 1111 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 9/82 (10%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH-NGFLNLEGRKMSKSNGNFITIN 289 FDI G DL+ P+H + A EK I NG L + G KMSKS GNF+T++ Sbjct: 691 FDIRASGKDLV-PNHLTFCLYTHTAIFDEKYWPKGIRANGHLLMNGEKMSKSTGNFMTLH 749 Query: 290 ELLETKKFGGRSWPAPVIRLAM 311 E TKKFG A RLA+ Sbjct: 750 E--ATKKFG-----ADATRLAL 764 >gi|294501414|ref|YP_003565114.1| valyl-tRNA synthetase [Bacillus megaterium QM B1551] gi|294351351|gb|ADE71680.1| valyl-tRNA synthetase [Bacillus megaterium QM B1551] Length = 880 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 17/138 (12%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGW-HIECSAMS 223 G R+P YHK+ PAD W++ + + W S W GW ++ + Sbjct: 415 GHRIPAWYHKETGEVYVDHEAPADIENWEQDSDVLDTWFSSALWPFSTMGWPDVDAADFK 474 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +Y V G D+IF I Q ++ IH + EGRKMSKS G Sbjct: 475 RYYPTNVLVT---GYDIIFFWVSRMIFQGLEFTGKRPFDDVLIHGLVRDAEGRKMSKSLG 531 Query: 284 NFITINELLETKKFGGRS 301 N + E++E K+G S Sbjct: 532 NGVDPMEVIE--KYGADS 547 >gi|295706762|ref|YP_003599837.1| valyl-tRNA synthetase [Bacillus megaterium DSM 319] gi|294804421|gb|ADF41487.1| valyl-tRNA synthetase [Bacillus megaterium DSM 319] Length = 880 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 17/138 (12%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGW-HIECSAMS 223 G R+P YHK+ PAD W++ + + W S W GW ++ + Sbjct: 415 GHRIPAWYHKETGEVYVDHETPADIENWEQDSDVLDTWFSSALWPFSTMGWPDVDAADFK 474 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +Y V G D+IF I Q ++ IH + EGRKMSKS G Sbjct: 475 RYYPTNVLVT---GYDIIFFWVSRMIFQGLEFTGKRPFDDVLIHGLVRDAEGRKMSKSLG 531 Query: 284 NFITINELLETKKFGGRS 301 N + E++E K+G S Sbjct: 532 NGVDPMEVIE--KYGADS 547 >gi|296085083|emb|CBI28498.3| unnamed protein product [Vitis vinifera] Length = 84 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%) Query: 149 NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW 208 N ++DT S ++ K G RV K+NPA+F+LWK P E ++PW Sbjct: 2 NGSCLYDTPLYLAPTSHDSYPLENNKAGKRVDVDSRKRNPAEFVLWKNVRPSESSQDNPW 61 Query: 209 GRGRPGWHIE 218 H+E Sbjct: 62 DFKISRRHVE 71 >gi|319937416|ref|ZP_08011823.1| valyl-tRNA synthetase [Coprobacillus sp. 29_1] gi|319807782|gb|EFW04375.1| valyl-tRNA synthetase [Coprobacillus sp. 29_1] Length = 876 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 63/271 (23%), Positives = 100/271 (36%), Gaps = 35/271 (12%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G +VP YHK+ P D WK+ + W S W GW S M Sbjct: 410 GHQVPAWYHKETGEVYVGKTAPEDIDNWKQDEDVLDTWFSSALWPFSTMGWPNTESEMFK 469 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I QS ++ IH + +GRKMSKS GN Sbjct: 470 RYFPT--DTLVTGYDIIFFWVSRMIFQSLEFTHERPFKDVLIHGLIRDEQGRKMSKSLGN 527 Query: 285 FITINELL-----ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 + +++ +T +F + AP + L + +F + A +L + Sbjct: 528 GVDPMDVIDEYGADTLRFFLTTNSAPGMDLRYIPEKLEASWNFINKIWNSARFVLMNIDE 587 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG------ 393 + LS Y +L+ + L+ + R +N D N + + Sbjct: 588 DMKYED------LSFTYLNLSDQWILNRLNDVIRSVDENMDKFEFVNVGSELYNFIWDDF 641 Query: 394 ----IEVCKEHLNKNISIAIEKLVQERLILL 420 IE+ K HLN + ++ QE L+ + Sbjct: 642 CSWYIELSKAHLNSDNDTE-KRATQETLVYV 671 >gi|303328459|ref|ZP_07358896.1| isoleucine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] gi|302861453|gb|EFL84390.1| isoleucine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] Length = 947 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 10/71 (14%) Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 ++ H ++ EGRKMSKS GN I EL+E KFG A ++RL + YRE I Sbjct: 593 SVLTHGYVVDGEGRKMSKSIGNVIAPQELIE--KFG-----AEIVRLWVSSVEYREDIRI 645 Query: 323 TVQ---RLTEA 330 + Q RL +A Sbjct: 646 SDQILGRLVDA 656 >gi|212638460|ref|YP_002314980.1| valyl-tRNA synthetase [Anoxybacillus flavithermus WK1] gi|254783550|sp|B7GH39|SYV_ANOFW RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|212559940|gb|ACJ32995.1| Valyl-tRNA synthetase [Anoxybacillus flavithermus WK1] Length = 875 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W++ + W S W GW + SA + Sbjct: 410 GHRIPAWYHKETGEVYVDHEPPADIENWEQDQDVLDTWFSSALWPFSTMGWPDKTSADYN 469 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D+ G D+IF I Q+ ++ IH + +GRKMSKS GN Sbjct: 470 RYYPT--DVLVTGYDIIFFWVSRMIFQALEFTGKRPFKDVLIHGLVRDAQGRKMSKSLGN 527 Query: 285 FITINELLETKKFGGRS 301 + ++++ ++G S Sbjct: 528 GVDPMDVID--QYGADS 542 >gi|257893530|ref|ZP_05673183.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|257829909|gb|EEV56516.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,408] Length = 930 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 579 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 631 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 632 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 691 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 692 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 719 >gi|257890202|ref|ZP_05669855.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|257826562|gb|EEV53188.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,410] Length = 930 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 579 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 631 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 632 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 691 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 692 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 719 >gi|257885188|ref|ZP_05664841.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,501] gi|257821040|gb|EEV48174.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,501] Length = 932 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|293571723|ref|ZP_06682742.1| isoleucyl-tRNA synthetase [Enterococcus faecium E980] gi|291608180|gb|EFF37483.1| isoleucyl-tRNA synthetase [Enterococcus faecium E980] Length = 932 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|293553195|ref|ZP_06673832.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1039] gi|291602605|gb|EFF32820.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1039] Length = 932 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|257888495|ref|ZP_05668148.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,141,733] gi|257824549|gb|EEV51481.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,141,733] Length = 930 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 579 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 631 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 632 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 691 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 692 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 719 >gi|227550467|ref|ZP_03980516.1| isoleucine--tRNA ligase [Enterococcus faecium TX1330] gi|227180368|gb|EEI61340.1| isoleucine--tRNA ligase [Enterococcus faecium TX1330] Length = 932 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|69244704|ref|ZP_00602968.1| Isoleucyl-tRNA synthetase, class Ia [Enterococcus faecium DO] gi|257879376|ref|ZP_05659029.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257881758|ref|ZP_05661411.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|260558818|ref|ZP_05831007.1| isoleucyl-tRNA synthetase [Enterococcus faecium C68] gi|261206528|ref|ZP_05921228.1| isoleucyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289565438|ref|ZP_06445887.1| isoleucyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|293568290|ref|ZP_06679614.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1071] gi|294614701|ref|ZP_06694603.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1636] gi|294619001|ref|ZP_06698496.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1679] gi|294621613|ref|ZP_06700778.1| isoleucyl-tRNA synthetase [Enterococcus faecium U0317] gi|314950111|ref|ZP_07853397.1| isoleucine--tRNA ligase [Enterococcus faecium TX0082] gi|68196295|gb|EAN10724.1| Isoleucyl-tRNA synthetase, class Ia [Enterococcus faecium DO] gi|257813604|gb|EEV42362.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257817416|gb|EEV44744.1| isoleucyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|260075277|gb|EEW63590.1| isoleucyl-tRNA synthetase [Enterococcus faecium C68] gi|260079238|gb|EEW66929.1| isoleucyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289162767|gb|EFD10618.1| isoleucyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|291589002|gb|EFF20826.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1071] gi|291592439|gb|EFF24046.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1636] gi|291594662|gb|EFF26044.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1679] gi|291598778|gb|EFF29830.1| isoleucyl-tRNA synthetase [Enterococcus faecium U0317] gi|313643552|gb|EFS08132.1| isoleucine--tRNA ligase [Enterococcus faecium TX0082] Length = 932 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|293560464|ref|ZP_06676956.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1162] gi|314937861|ref|ZP_07845177.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133a04] gi|314941352|ref|ZP_07848245.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133C] gi|314951348|ref|ZP_07854402.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133A] gi|314992821|ref|ZP_07858222.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133B] gi|314997981|ref|ZP_07862876.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133a01] gi|291605612|gb|EFF35054.1| isoleucyl-tRNA synthetase [Enterococcus faecium E1162] gi|313587993|gb|EFR66838.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133a01] gi|313592625|gb|EFR71470.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133B] gi|313596565|gb|EFR75410.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133A] gi|313599775|gb|EFR78618.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133C] gi|313642719|gb|EFS07299.1| isoleucine--tRNA ligase [Enterococcus faecium TX0133a04] Length = 932 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|257899128|ref|ZP_05678781.1| isoleucyl-tRNA synthetase [Enterococcus faecium Com15] gi|257837040|gb|EEV62114.1| isoleucyl-tRNA synthetase [Enterococcus faecium Com15] Length = 930 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 579 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 631 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 632 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 691 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 692 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 719 >gi|293377353|ref|ZP_06623557.1| isoleucine--tRNA ligase [Enterococcus faecium PC4.1] gi|292644045|gb|EFF62151.1| isoleucine--tRNA ligase [Enterococcus faecium PC4.1] Length = 932 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 581 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 633 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 634 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 693 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 694 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 721 >gi|330946917|gb|EGH47752.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 165 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 23/157 (14%) Query: 314 THYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSALYNDLNTVSAI 365 +HYR I+++ L E++ L ++ + +PA +A+ +D T A Sbjct: 1 SHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAMNDDFGTPEAC 60 Query: 366 QALHKLARE--STKNHDLLPIFNAS------AHILGI------EVCKEHLNKNISIA-IE 410 L ++ RE + D+ + A +LG+ + + + A +E Sbjct: 61 AVLFEMVREINRLRESDIAAAAGLAARLKQLASVLGVLQLEADDFLRAGAEGRVDAAEVE 120 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 L+Q RL K + +D IR Q+ + G +LED K Sbjct: 121 ALIQARLAARAAKDWGESDRIRDQITAMGVLLEDGKG 157 >gi|258615786|ref|ZP_05713556.1| isoleucyl-tRNA synthetase [Enterococcus faecium DO] Length = 795 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 444 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 496 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 497 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 556 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 557 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 584 >gi|257897130|ref|ZP_05676783.1| isoleucyl-tRNA synthetase [Enterococcus faecium Com12] gi|257833695|gb|EEV60116.1| isoleucyl-tRNA synthetase [Enterococcus faecium Com12] Length = 930 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I GF L+ EGRKMSKS GN I +++ K+FG A ++RL + Y + ++ Sbjct: 579 ISQGFALDGEGRKMSKSLGNIIAPEKVI--KQFG-----ADILRLWVSSVDYEADVRVSM 631 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVSAI------QALHKLARE 374 L++ + K T + DP + YNDL +V Q + ++ E Sbjct: 632 DILSQVAEVYRKIRNTMRFLLANTEDFDPKKDTVSYNDLRSVDKYMTVRLNQVIKEIREE 691 Query: 375 STKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ + I+ + L +++ +L+ Sbjct: 692 GYDKYNFMHIYRTVMNFLTVDLSSFYLD 719 >gi|206975955|ref|ZP_03236865.1| valyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217961947|ref|YP_002340517.1| valyl-tRNA synthetase [Bacillus cereus AH187] gi|222097904|ref|YP_002531961.1| valyl-tRNA synthetase [Bacillus cereus Q1] gi|206745707|gb|EDZ57104.1| valyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217067118|gb|ACJ81368.1| valyl-tRNA synthetase [Bacillus cereus AH187] gi|221241962|gb|ACM14672.1| valyl-tRNA synthetase [Bacillus cereus Q1] Length = 881 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 534 GIDPMEVIE--KYGA 546 >gi|75759956|ref|ZP_00740025.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899626|ref|YP_002448037.1| valyl-tRNA synthetase [Bacillus cereus G9842] gi|74492553|gb|EAO55700.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541207|gb|ACK93601.1| valyl-tRNA synthetase [Bacillus cereus G9842] Length = 881 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPDEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|229019683|ref|ZP_04176490.1| Valyl-tRNA synthetase [Bacillus cereus AH1273] gi|229175140|ref|ZP_04302656.1| Valyl-tRNA synthetase [Bacillus cereus MM3] gi|228608276|gb|EEK65582.1| Valyl-tRNA synthetase [Bacillus cereus MM3] gi|228741590|gb|EEL91783.1| Valyl-tRNA synthetase [Bacillus cereus AH1273] Length = 881 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTDAPADIENWNQDNDVLDTWFSSALWPFSTLGWPDEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|229025922|ref|ZP_04182314.1| Valyl-tRNA synthetase [Bacillus cereus AH1272] gi|228735368|gb|EEL85971.1| Valyl-tRNA synthetase [Bacillus cereus AH1272] Length = 867 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTDAPADIENWNQDNDVLDTWFSSALWPFSTLGWPDEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|229141196|ref|ZP_04269735.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-ST26] gi|228642237|gb|EEK98529.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-ST26] Length = 867 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 520 GIDPMEVIE--KYGA 532 >gi|228910293|ref|ZP_04074110.1| Valyl-tRNA synthetase [Bacillus thuringiensis IBL 200] gi|228849353|gb|EEM94190.1| Valyl-tRNA synthetase [Bacillus thuringiensis IBL 200] Length = 867 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPDEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|228902987|ref|ZP_04067127.1| Valyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] gi|228967560|ref|ZP_04128586.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792139|gb|EEM39715.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228856663|gb|EEN01183.1| Valyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] Length = 867 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPDEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|229198587|ref|ZP_04325289.1| Valyl-tRNA synthetase [Bacillus cereus m1293] gi|228584869|gb|EEK42985.1| Valyl-tRNA synthetase [Bacillus cereus m1293] Length = 867 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 520 GIDPMEVIE--KYGA 532 >gi|228987710|ref|ZP_04147821.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771984|gb|EEM20439.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 867 Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 520 GIDPMEVIE--KYGA 532 >gi|229163414|ref|ZP_04291365.1| Valyl-tRNA synthetase [Bacillus cereus R309803] gi|228619983|gb|EEK76858.1| Valyl-tRNA synthetase [Bacillus cereus R309803] Length = 867 Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPDEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|42783595|ref|NP_980842.1| valyl-tRNA synthetase [Bacillus cereus ATCC 10987] gi|81409029|sp|Q72ZW8|SYV_BACC1 RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|42739524|gb|AAS43450.1| valyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 881 Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 534 GIDPMEVIE--KYGA 546 >gi|324328361|gb|ADY23621.1| valyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 881 Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 534 GIDPMEVIE--KYGA 546 >gi|52141048|ref|YP_085781.1| valyl-tRNA synthetase [Bacillus cereus E33L] gi|81824177|sp|Q633Y6|SYV_BACCZ RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|51974517|gb|AAU16067.1| valine--tRNA ligase (valyl-tRNA synthetase) [Bacillus cereus E33L] Length = 881 Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 534 GIDPMEVIE--KYGA 546 >gi|47566648|ref|ZP_00237470.1| valyl-tRNA synthetase [Bacillus cereus G9241] gi|229158076|ref|ZP_04286146.1| Valyl-tRNA synthetase [Bacillus cereus ATCC 4342] gi|47556678|gb|EAL15010.1| valyl-tRNA synthetase [Bacillus cereus G9241] gi|228625395|gb|EEK82152.1| Valyl-tRNA synthetase [Bacillus cereus ATCC 4342] Length = 881 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 534 GIDPMEVIE--KYGA 546 >gi|228923211|ref|ZP_04086501.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836417|gb|EEM81768.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 881 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|186476942|ref|YP_001858412.1| methionyl-tRNA synthetase [Burkholderia phymatum STM815] gi|184193401|gb|ACC71366.1| methionyl-tRNA synthetase [Burkholderia phymatum STM815] Length = 726 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 N++ H GFL ++G KMSKS G FIT N ++ET Sbjct: 341 NVFAH-GFLTVDGAKMSKSRGTFITANSVIET 371 >gi|156936945|ref|YP_001434741.1| leucyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I] gi|189030282|sp|A8A8T2|SYL_IGNH4 RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA ligase; Short=LeuRS gi|156565929|gb|ABU81334.1| leucyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I] Length = 1022 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 7/47 (14%) Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 + NGF+NLEG+KMSKS GN I I + RS+ +IRL +L Sbjct: 686 VVNGFVNLEGKKMSKSLGNIIPITVAI-------RSFAPDIIRLVLL 725 >gi|326942237|gb|AEA18133.1| valyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis CT-43] Length = 881 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSVLWPFSTLGWPNEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|228941625|ref|ZP_04104172.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974554|ref|ZP_04135120.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981149|ref|ZP_04141449.1| Valyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228778349|gb|EEM26616.1| Valyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228784957|gb|EEM32970.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817837|gb|EEM63915.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 881 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|229123998|ref|ZP_04253190.1| Valyl-tRNA synthetase [Bacillus cereus 95/8201] gi|228659300|gb|EEL14948.1| Valyl-tRNA synthetase [Bacillus cereus 95/8201] Length = 881 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|229081723|ref|ZP_04214216.1| Valyl-tRNA synthetase [Bacillus cereus Rock4-2] gi|228701568|gb|EEL54061.1| Valyl-tRNA synthetase [Bacillus cereus Rock4-2] Length = 867 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|206969837|ref|ZP_03230791.1| valyl-tRNA synthetase [Bacillus cereus AH1134] gi|218233729|ref|YP_002369265.1| valyl-tRNA synthetase [Bacillus cereus B4264] gi|229071967|ref|ZP_04205177.1| Valyl-tRNA synthetase [Bacillus cereus F65185] gi|206735525|gb|EDZ52693.1| valyl-tRNA synthetase [Bacillus cereus AH1134] gi|218161686|gb|ACK61678.1| valine--tRNA ligase [Bacillus cereus B4264] gi|228711126|gb|EEL63091.1| Valyl-tRNA synthetase [Bacillus cereus F65185] Length = 881 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|163942206|ref|YP_001647090.1| valyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|163864403|gb|ABY45462.1| valyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] Length = 881 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PADF W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADFENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 + D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 KFYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|30022546|ref|NP_834177.1| valyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|229048175|ref|ZP_04193744.1| Valyl-tRNA synthetase [Bacillus cereus AH676] gi|229111929|ref|ZP_04241473.1| Valyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|296504949|ref|YP_003666649.1| valyl-tRNA synthetase [Bacillus thuringiensis BMB171] gi|81433513|sp|Q817R6|SYV_BACCR RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|29898104|gb|AAP11378.1| Valyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|228671493|gb|EEL26793.1| Valyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|228723162|gb|EEL74538.1| Valyl-tRNA synthetase [Bacillus cereus AH676] gi|296326001|gb|ADH08929.1| valyl-tRNA synthetase [Bacillus thuringiensis BMB171] Length = 881 Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|228954741|ref|ZP_04116763.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229192669|ref|ZP_04319628.1| Valyl-tRNA synthetase [Bacillus cereus ATCC 10876] gi|228590759|gb|EEK48619.1| Valyl-tRNA synthetase [Bacillus cereus ATCC 10876] gi|228804939|gb|EEM51536.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 867 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|228960734|ref|ZP_04122373.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229129750|ref|ZP_04258717.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|229147028|ref|ZP_04275388.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-ST24] gi|229180734|ref|ZP_04308072.1| Valyl-tRNA synthetase [Bacillus cereus 172560W] gi|228602712|gb|EEK60195.1| Valyl-tRNA synthetase [Bacillus cereus 172560W] gi|228636416|gb|EEK92886.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-ST24] gi|228653666|gb|EEL09537.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|228798950|gb|EEM45925.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 867 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|220903664|ref|YP_002478976.1| isoleucyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254782389|sp|B8J3R3|SYI_DESDA RecName: Full=Isoleucyl-tRNA synthetase; AltName: Full=Isoleucine--tRNA ligase; Short=IleRS gi|219867963|gb|ACL48298.1| isoleucyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 938 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 10/67 (14%) Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI---DFT 323 H ++ +GRKMSKS GN I EL+E KFG A ++RL + YRE I D Sbjct: 597 HGYVVDGDGRKMSKSVGNVIAPQELIE--KFG-----AEIVRLWVSSVEYREDIRLSDEI 649 Query: 324 VQRLTEA 330 + RL +A Sbjct: 650 LGRLVDA 656 >gi|302817213|ref|XP_002990283.1| hypothetical protein SELMODRAFT_131311 [Selaginella moellendorffii] gi|300141992|gb|EFJ08698.1| hypothetical protein SELMODRAFT_131311 [Selaginella moellendorffii] Length = 1093 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 30/60 (50%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ G DLI H I E+ + NGFL L G KM+KS GNF+TI + Sbjct: 667 FDLRVSGKDLIQNHLTFSIYNHTAMFPEERWPRSFRCNGFLLLNGEKMAKSTGNFLTIRD 726 >gi|169350153|ref|ZP_02867091.1| hypothetical protein CLOSPI_00895 [Clostridium spiroforme DSM 1552] gi|169292936|gb|EDS75069.1| hypothetical protein CLOSPI_00895 [Clostridium spiroforme DSM 1552] Length = 878 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 38/255 (14%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G +VP YHK+ P D WK+ + W S W GW E S + Sbjct: 416 GHQVPAWYHKETGEVYVGKQPPKDIENWKQDEDVLDTWFSSALWPFSTLGWPNEDSELFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 476 RYFPT--NTLVTGYDIIFFWVSRMIFQSLHFTDQRPFENVLIHGLIRDEQGRKMSKSLGN 533 Query: 285 FITINELL-----ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 + +++ +T +F + AP + L + +F + A +L + Sbjct: 534 GVDPMDVIDEYGADTLRFFLTTNSAPGMDLRYIPEKLESSWNFINKIWNSARFVLMNIDE 593 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSA--IQALHKLARESTKNHDLLPIFNASAHILG---- 393 + + + +++LN + L+++ RE N D N + Sbjct: 594 SMKYEDLT--------FDNLNLCDKWILNRLNEVIREVDINMDKFEFVNVGTELYKFIWD 645 Query: 394 ------IEVCKEHLN 402 IE+ K HLN Sbjct: 646 DFCSWYIELTKVHLN 660 >gi|302807078|ref|XP_002985270.1| hypothetical protein SELMODRAFT_157130 [Selaginella moellendorffii] gi|300147098|gb|EFJ13764.1| hypothetical protein SELMODRAFT_157130 [Selaginella moellendorffii] Length = 1103 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 30/60 (50%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ G DLI H I E+ + NGFL L G KM+KS GNF+TI + Sbjct: 669 FDLRVSGKDLIQNHLTFSIYNHTAMFPEERWPRSFRCNGFLLLNGEKMAKSTGNFLTIRD 728 >gi|302755993|ref|XP_002961420.1| hypothetical protein SELMODRAFT_77212 [Selaginella moellendorffii] gi|300170079|gb|EFJ36680.1| hypothetical protein SELMODRAFT_77212 [Selaginella moellendorffii] Length = 1096 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 30/60 (50%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ G DLI H I E+ + NGFL L G KM+KS GNF+TI + Sbjct: 670 FDLRVSGKDLIQNHLTFSIYNHTAMFPEERWPRSFRCNGFLLLNGEKMAKSTGNFLTIRD 729 >gi|222148975|ref|YP_002549932.1| arginyl-tRNA synthetase [Agrobacterium vitis S4] gi|254782937|sp|B9JXE6|SYR_AGRVS RecName: Full=Arginyl-tRNA synthetase; AltName: Full=Arginine--tRNA ligase; Short=ArgRS gi|221735961|gb|ACM36924.1| arginyl-tRNA synthetase [Agrobacterium vitis S4] Length = 585 Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 22/111 (19%) Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI---- 332 KMSK +G+F+T+ +++E GR +R ML EP+DF ++TE Sbjct: 399 KMSKRSGDFVTLRDVVEEV---GRD----SVRFMMLYRKSSEPLDFDFAKVTEQSKDNPV 451 Query: 333 ---------LLSKWPQTSTSKGIID--PAVLSALYNDLNTVSAIQALHKLA 372 +S + Q + G ID P VL A + S +Q + KLA Sbjct: 452 FYVQYAHARCMSIFRQAREAFGDIDLSPDVLEAAVTGITEPSEVQLIAKLA 502 >gi|302773323|ref|XP_002970079.1| hypothetical protein SELMODRAFT_410808 [Selaginella moellendorffii] gi|300162590|gb|EFJ29203.1| hypothetical protein SELMODRAFT_410808 [Selaginella moellendorffii] Length = 1108 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 30/60 (50%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FD+ G DLI H I E+ + NGFL L G KM+KS GNF+TI + Sbjct: 678 FDLRVSGKDLIQNHLTFSIYNHTAMFPEERWPRSFRCNGFLLLNGEKMAKSTGNFLTIRD 737 >gi|239993317|ref|ZP_04713841.1| isoleucyl-tRNA synthetase [Alteromonas macleodii ATCC 27126] Length = 939 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 21/147 (14%) Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI---DFT 323 H ++ GRKMSKS GN + E+ T K G A ++RL + T YR I D Sbjct: 595 HGFTVDAHGRKMSKSVGNVVAPQEV--TNKLG-----ADILRLWVASTDYRGEIAVSDEI 647 Query: 324 VQRLTE--------AEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARES 375 ++R + A LL+ S + + +++ D V+ +AL + E+ Sbjct: 648 LKRAADGYRRVRNTARFLLANLNGFSVEDAVAEEDMVAL---DRWIVARAKALQEELIEA 704 Query: 376 TKNHDLLPIFNASAHILGIEVCKEHLN 402 N+DLL + H IE+ +L+ Sbjct: 705 YDNYDLLVVSQKLTHFCSIELGSFYLD 731 >gi|23099516|ref|NP_692982.1| valyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] gi|81746073|sp|Q8EPN2|SYV_OCEIH RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|22777745|dbj|BAC14017.1| valyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] Length = 883 Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W++ + W S W GW E SA Sbjct: 419 GHRIPAWYHKETKEIYVGKEAPADIENWEQDEDVLDTWFSSALWPFSTMGWPNEDSADLK 478 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y ++ G D+IF I QS + + +H + +GRKMSKS GN Sbjct: 479 RYFPT--NVLVTGYDIIFFWVSRMIFQSKEFMNEKPFEDTLLHGLIRDADGRKMSKSLGN 536 Query: 285 FITINELLETKKFGGRS 301 + +++E K+G S Sbjct: 537 GVDPMDVIE--KYGADS 551 >gi|123473252|ref|XP_001319815.1| leucyl-tRNA synthetase [Trichomonas vaginalis G3] gi|121902607|gb|EAY07592.1| leucyl-tRNA synthetase family protein [Trichomonas vaginalis G3] Length = 1040 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 21/26 (80%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLE 293 NGFLNL +KMSKS GNF+T+ E +E Sbjct: 691 NGFLNLNNKKMSKSEGNFLTVVESIE 716 >gi|56459820|ref|YP_155101.1| methionyl-tRNA synthetase [Idiomarina loihiensis L2TR] gi|68565965|sp|Q5R0G6|SYM_IDILO RecName: Full=Methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS gi|56178830|gb|AAV81552.1| Methionyl-tRNA synthetase [Idiomarina loihiensis L2TR] Length = 677 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 W + A H++GK D+I+ H A AD + T N+W H GF+ + Sbjct: 281 WQADSEAELYHFIGK---------DIIYFHSLFWPAMLKGADFRQPT-NVWAH-GFITVN 329 Query: 275 GRKMSKSNGNFITINELLE 293 G KMSKS G FI LE Sbjct: 330 GTKMSKSKGTFIKARTYLE 348 >gi|256761215|ref|ZP_05501795.1| valyl-tRNA synthetase [Enterococcus faecalis T3] gi|256682466|gb|EEU22161.1| valyl-tRNA synthetase [Enterococcus faecalis T3] Length = 880 Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|299822786|ref|ZP_07054672.1| valine--tRNA ligase [Listeria grayi DSM 20601] gi|299816315|gb|EFI83553.1| valine--tRNA ligase [Listeria grayi DSM 20601] Length = 884 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHKK PAD W++ + W S W GW + Sbjct: 418 GHRIPAWYHKKTGELYVGTEAPADLENWEQDEDVLDTWFSSGLWPFSTMGWPDTENEDYK 477 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ ++ G D+IF I QS + + +H + EGRKMSKS GN Sbjct: 478 HFFPT--NVLVTGYDIIFFWVSRMIFQSLEFTGHKPFNDTLLHGLVRDAEGRKMSKSLGN 535 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 536 GVDPIEVID--KYGADS 550 >gi|255974415|ref|ZP_05425001.1| valyl-tRNA synthetase [Enterococcus faecalis T2] gi|307281862|ref|ZP_07562078.1| valyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|255967287|gb|EET97909.1| valyl-tRNA synthetase [Enterococcus faecalis T2] gi|306503893|gb|EFM73114.1| valyl-tRNA synthetase [Enterococcus faecalis TX0860] Length = 880 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|315150958|gb|EFT94974.1| valyl-tRNA synthetase [Enterococcus faecalis TX0012] Length = 880 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|295114302|emb|CBL32939.1| valyl-tRNA synthetase [Enterococcus sp. 7L76] Length = 880 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|257080637|ref|ZP_05574998.1| valyl-tRNA synthetase [Enterococcus faecalis E1Sol] gi|307290155|ref|ZP_07570074.1| valyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|256988667|gb|EEU75969.1| valyl-tRNA synthetase [Enterococcus faecalis E1Sol] gi|306498783|gb|EFM68281.1| valyl-tRNA synthetase [Enterococcus faecalis TX0411] Length = 880 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEEPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|255970840|ref|ZP_05421426.1| valyl-tRNA synthetase [Enterococcus faecalis T1] gi|256958166|ref|ZP_05562337.1| valyl-tRNA synthetase [Enterococcus faecalis DS5] gi|300860819|ref|ZP_07106906.1| valine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|307275085|ref|ZP_07556239.1| valyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|312899334|ref|ZP_07758668.1| valyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|312952220|ref|ZP_07771097.1| valyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|255961858|gb|EET94334.1| valyl-tRNA synthetase [Enterococcus faecalis T1] gi|256948662|gb|EEU65294.1| valyl-tRNA synthetase [Enterococcus faecalis DS5] gi|300849858|gb|EFK77608.1| valine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|306508203|gb|EFM77319.1| valyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|310629807|gb|EFQ13090.1| valyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|311293536|gb|EFQ72092.1| valyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|315036220|gb|EFT48152.1| valyl-tRNA synthetase [Enterococcus faecalis TX0027] gi|315154542|gb|EFT98558.1| valyl-tRNA synthetase [Enterococcus faecalis TX0031] gi|315160097|gb|EFU04114.1| valyl-tRNA synthetase [Enterococcus faecalis TX0312] gi|315169319|gb|EFU13336.1| valyl-tRNA synthetase [Enterococcus faecalis TX1341] gi|315174736|gb|EFU18753.1| valyl-tRNA synthetase [Enterococcus faecalis TX1346] Length = 880 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|323478896|gb|ADX78335.1| valyl-tRNA synthetase [Enterococcus faecalis 62] Length = 880 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEVPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|229547604|ref|ZP_04436329.1| valyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|229548188|ref|ZP_04436913.1| valyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|256852478|ref|ZP_05557854.1| valyl-tRNA synthetase [Enterococcus faecalis T8] gi|257091151|ref|ZP_05585512.1| valyl-tRNA synthetase [Enterococcus faecalis CH188] gi|312902616|ref|ZP_07761821.1| valyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|229306667|gb|EEN72663.1| valyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|229307294|gb|EEN73281.1| valyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|256712332|gb|EEU27364.1| valyl-tRNA synthetase [Enterococcus faecalis T8] gi|256999963|gb|EEU86483.1| valyl-tRNA synthetase [Enterococcus faecalis CH188] gi|310633954|gb|EFQ17237.1| valyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|315030884|gb|EFT42816.1| valyl-tRNA synthetase [Enterococcus faecalis TX4000] gi|315163283|gb|EFU07300.1| valyl-tRNA synthetase [Enterococcus faecalis TX0645] gi|315578975|gb|EFU91166.1| valyl-tRNA synthetase [Enterococcus faecalis TX0630] Length = 880 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|167636213|ref|ZP_02394517.1| valyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|170688689|ref|ZP_02879894.1| valyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|254687052|ref|ZP_05150910.1| valyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066] gi|254741600|ref|ZP_05199287.1| valyl-tRNA synthetase [Bacillus anthracis str. Kruger B] gi|167528434|gb|EDR91202.1| valyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|170667375|gb|EDT18133.1| valyl-tRNA synthetase [Bacillus anthracis str. A0465] Length = 881 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSFGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|307288317|ref|ZP_07568312.1| valyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|306500703|gb|EFM70025.1| valyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|315165976|gb|EFU09993.1| valyl-tRNA synthetase [Enterococcus faecalis TX1302] Length = 880 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEEPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|227518203|ref|ZP_03948252.1| valyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|227074359|gb|EEI12322.1| valyl-tRNA synthetase [Enterococcus faecalis TX0104] Length = 880 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|323697808|ref|ZP_08109720.1| isoleucyl-tRNA synthetase [Desulfovibrio sp. ND132] gi|323457740|gb|EGB13605.1| isoleucyl-tRNA synthetase [Desulfovibrio desulfuricans ND132] Length = 938 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 10/67 (14%) Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI---DFT 323 H ++ EGRKMSKS GN + E+++ KFG A ++R+ + ++Y+E I D T Sbjct: 596 HGYVVDAEGRKMSKSIGNVLAPQEIID--KFG-----AEILRMWVSASNYQEDIRISDET 648 Query: 324 VQRLTEA 330 + RL +A Sbjct: 649 LSRLVDA 655 >gi|309803792|ref|ZP_07697878.1| DALR domain protein [Lactobacillus iners LactinV 11V1-d] gi|308164201|gb|EFO66462.1| DALR domain protein [Lactobacillus iners LactinV 11V1-d] Length = 110 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 20/112 (17%) Query: 357 NDLNTVSAIQALHKLAREST----------KN-HDLLPIFNASAHILGIEVCKEHLNKNI 405 +D N +A+ +H+L KN D + + + I G+++ E N + Sbjct: 3 DDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDEWLLIFGVKITTEMENDD- 61 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++KLV +R + + K ++++D IR +L +KG ILED P TRW Sbjct: 62 --TVQKLVDQRNLARQNKDWATSDQIRDELLAKGIILED--TPQG----TRW 105 >gi|254757634|ref|ZP_05209661.1| valyl-tRNA synthetase [Bacillus anthracis str. Australia 94] Length = 881 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|30264526|ref|NP_846903.1| valyl-tRNA synthetase [Bacillus anthracis str. Ames] gi|47529989|ref|YP_021338.1| valyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187350|ref|YP_030602.1| valyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|65321827|ref|ZP_00394786.1| COG0525: Valyl-tRNA synthetase [Bacillus anthracis str. A2012] gi|165872012|ref|ZP_02216653.1| valyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167640706|ref|ZP_02398966.1| valyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|170708361|ref|ZP_02898805.1| valyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|177653987|ref|ZP_02936028.1| valyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|190567025|ref|ZP_03019941.1| valyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|218905660|ref|YP_002453494.1| valyl-tRNA synthetase [Bacillus cereus AH820] gi|227817238|ref|YP_002817247.1| valyl-tRNA synthetase [Bacillus anthracis str. CDC 684] gi|229093554|ref|ZP_04224656.1| Valyl-tRNA synthetase [Bacillus cereus Rock3-42] gi|229600610|ref|YP_002868742.1| valine--tRNA ligase [Bacillus anthracis str. A0248] gi|254724614|ref|ZP_05186397.1| valyl-tRNA synthetase [Bacillus anthracis str. A1055] gi|254736562|ref|ZP_05194268.1| valyl-tRNA synthetase [Bacillus anthracis str. Western North America USA6153] gi|254754802|ref|ZP_05206837.1| valyl-tRNA synthetase [Bacillus anthracis str. Vollum] gi|81581271|sp|Q81LD3|SYV_BACAN RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|30259184|gb|AAP28389.1| valine--tRNA ligase [Bacillus anthracis str. Ames] gi|47505137|gb|AAT33813.1| valyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181277|gb|AAT56653.1| valyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|164712302|gb|EDR17838.1| valyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167511278|gb|EDR86664.1| valyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|170126736|gb|EDS95619.1| valyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|172081042|gb|EDT66120.1| valyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|190562016|gb|EDV15985.1| valyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|218536093|gb|ACK88491.1| valyl-tRNA synthetase [Bacillus cereus AH820] gi|227005238|gb|ACP14981.1| valine--tRNA ligase [Bacillus anthracis str. CDC 684] gi|228689884|gb|EEL43689.1| Valyl-tRNA synthetase [Bacillus cereus Rock3-42] gi|229265018|gb|ACQ46655.1| valine--tRNA ligase [Bacillus anthracis str. A0248] Length = 881 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|301055965|ref|YP_003794176.1| valyl-tRNA synthetase [Bacillus anthracis CI] gi|300378134|gb|ADK07038.1| valyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI] Length = 881 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|228917096|ref|ZP_04080654.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935777|ref|ZP_04098589.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823834|gb|EEM69654.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842514|gb|EEM87604.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 867 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|49478642|ref|YP_038508.1| valyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81394711|sp|Q6HD68|SYV_BACHK RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|49330198|gb|AAT60844.1| valine--tRNA ligase (valyl-tRNA synthetase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 881 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|257417812|ref|ZP_05594806.1| valyl-tRNA synthetase [Enterococcus faecalis T11] gi|257159640|gb|EEU89600.1| valyl-tRNA synthetase [Enterococcus faecalis T11] Length = 880 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEEPADSENWVQDSDVLDTWFSSALWPFSTMGWPNEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|196034490|ref|ZP_03101899.1| valyl-tRNA synthetase [Bacillus cereus W] gi|228948172|ref|ZP_04110456.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993032|gb|EDX56991.1| valyl-tRNA synthetase [Bacillus cereus W] gi|228811530|gb|EEM57867.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 881 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|29377395|ref|NP_816549.1| valyl-tRNA synthetase [Enterococcus faecalis V583] gi|227554378|ref|ZP_03984425.1| valyl-tRNA synthetase [Enterococcus faecalis HH22] gi|75541540|sp|Q82ZW6|SYV_ENTFA RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|29344862|gb|AAO82619.1| valyl-tRNA synthetase [Enterococcus faecalis V583] gi|227176497|gb|EEI57469.1| valyl-tRNA synthetase [Enterococcus faecalis HH22] gi|315576283|gb|EFU88474.1| valyl-tRNA synthetase [Enterococcus faecalis TX0309B] gi|315582775|gb|EFU94966.1| valyl-tRNA synthetase [Enterococcus faecalis TX0309A] Length = 880 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W + + + W S W GW E S Sbjct: 414 GHQIPAWYHKETGEMYVGMEEPADSENWVQDSDVLDTWFSSALWPFSTMGWPNEASEDYQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPTSTLVTG--YDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 532 GIDPMDVIE--KYGA 544 >gi|229032112|ref|ZP_04188090.1| Valyl-tRNA synthetase [Bacillus cereus AH1271] gi|228729202|gb|EEL80200.1| Valyl-tRNA synthetase [Bacillus cereus AH1271] Length = 867 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEEPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|196039248|ref|ZP_03106554.1| valine--tRNA ligase [Bacillus cereus NVH0597-99] gi|196029875|gb|EDX68476.1| valine--tRNA ligase [Bacillus cereus NVH0597-99] Length = 881 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|118479624|ref|YP_896775.1| valyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|196044847|ref|ZP_03112081.1| valyl-tRNA synthetase [Bacillus cereus 03BB108] gi|225866439|ref|YP_002751817.1| valyl-tRNA synthetase [Bacillus cereus 03BB102] gi|229186699|ref|ZP_04313858.1| Valyl-tRNA synthetase [Bacillus cereus BGSC 6E1] gi|118418849|gb|ABK87268.1| valyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|196024335|gb|EDX63008.1| valyl-tRNA synthetase [Bacillus cereus 03BB108] gi|225789413|gb|ACO29630.1| valine--tRNA ligase [Bacillus cereus 03BB102] gi|228596802|gb|EEK54463.1| Valyl-tRNA synthetase [Bacillus cereus BGSC 6E1] Length = 881 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|172058142|ref|YP_001814602.1| valyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] gi|171990663|gb|ACB61585.1| valyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] Length = 878 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W++ + W S W GW E +A Sbjct: 413 GHRIPAWYHKETGEVYVGKEAPADLENWEQDNDVLDTWFSSALWPFSTMGWPNEGAADYQ 472 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+I I QS ++ IH + EGRKMSKS GN Sbjct: 473 KYFPTSTLV--TGYDIIAFWVSRMIFQSYEFTGERPFNDVLIHGLIRDSEGRKMSKSLGN 530 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 531 GIDPMDVIE--KYGADS 545 >gi|317153419|ref|YP_004121467.1| isoleucyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316943670|gb|ADU62721.1| isoleucyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 942 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 10/67 (14%) Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI---DFT 323 H ++ +GRKMSKS GN I E+++ KFG A ++R+ + ++Y+E I D T Sbjct: 596 HGYVVDADGRKMSKSIGNVIAPQEIID--KFG-----AEILRMWVSASNYQEDIRISDET 648 Query: 324 VQRLTEA 330 + RL +A Sbjct: 649 LNRLVDA 655 >gi|309804780|ref|ZP_07698844.1| valine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] gi|308165890|gb|EFO68109.1| valine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] Length = 879 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|309803196|ref|ZP_07697293.1| valine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] gi|308164704|gb|EFO66954.1| valine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] Length = 879 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|116333862|ref|YP_795389.1| valyl-tRNA synthetase [Lactobacillus brevis ATCC 367] gi|116099209|gb|ABJ64358.1| valyl-tRNA synthetase [Lactobacillus brevis ATCC 367] Length = 888 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+K K P D W++ + W S W GW E SA Sbjct: 421 GHRIPAWYNKQTGEVYVDTKAPKDIENWEQDPDVLDTWFSSALWPFSTMGWPDEDSADFK 480 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF + QS N+ +H + EGRKMSKS GN Sbjct: 481 RYFPTSTLVTG--YDIIFFWVSRMMFQSLEFTGKRPFKNVLLHGLIRDEEGRKMSKSLGN 538 Query: 285 FITINELLETKKFGGRS 301 I E+++ K+G + Sbjct: 539 GIDPMEVID--KYGADA 553 >gi|325911674|ref|ZP_08174081.1| valine--tRNA ligase [Lactobacillus iners UPII 143-D] gi|325476440|gb|EGC79599.1| valine--tRNA ligase [Lactobacillus iners UPII 143-D] Length = 879 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|259501662|ref|ZP_05744564.1| valine-tRNA ligase [Lactobacillus iners DSM 13335] gi|302191130|ref|ZP_07267384.1| valyl-tRNA synthetase [Lactobacillus iners AB-1] gi|309806332|ref|ZP_07700345.1| valine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|309807726|ref|ZP_07701660.1| valine--tRNA ligase [Lactobacillus iners LactinV 01V1-a] gi|309809959|ref|ZP_07703807.1| valine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|312871976|ref|ZP_07732058.1| valine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|312874665|ref|ZP_07734689.1| valine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|329921098|ref|ZP_08277621.1| valine--tRNA ligase [Lactobacillus iners SPIN 1401G] gi|259166947|gb|EEW51442.1| valine-tRNA ligase [Lactobacillus iners DSM 13335] gi|308167316|gb|EFO69482.1| valine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|308168986|gb|EFO71070.1| valine--tRNA ligase [Lactobacillus iners LactinV 01V1-a] gi|308169747|gb|EFO71792.1| valine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|311089895|gb|EFQ48315.1| valine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|311092553|gb|EFQ50915.1| valine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|328935005|gb|EGG31494.1| valine--tRNA ligase [Lactobacillus iners SPIN 1401G] Length = 879 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|315653725|ref|ZP_07906645.1| valine--tRNA ligase [Lactobacillus iners ATCC 55195] gi|325913051|ref|ZP_08175424.1| valine--tRNA ligase [Lactobacillus iners UPII 60-B] gi|315489087|gb|EFU78729.1| valine--tRNA ligase [Lactobacillus iners ATCC 55195] gi|325477731|gb|EGC80870.1| valine--tRNA ligase [Lactobacillus iners UPII 60-B] Length = 879 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|312871640|ref|ZP_07731732.1| valine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|311092865|gb|EFQ51217.1| valine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] Length = 879 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|312873260|ref|ZP_07733316.1| valine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|311091271|gb|EFQ49659.1| valine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] Length = 879 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+KK P D W + + W S W GW E +A Sbjct: 411 GHRIPAWYNKKTGEMVVQEEAPKDIENWDQDNDVLDTWFSSALWPFSTLGWPDEEAADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTKRRPFENVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G S Sbjct: 529 GIDPMDVVE--KYGADS 543 >gi|257874768|ref|ZP_05654421.1| valyl-tRNA synthetase [Enterococcus casseliflavus EC20] gi|257808934|gb|EEV37754.1| valyl-tRNA synthetase [Enterococcus casseliflavus EC20] Length = 881 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 13/138 (9%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W++ + W S W GW E + Sbjct: 414 GHQIPAWYHKETGEMYVGLEAPADAENWQQDPDVLDTWFSSALWPFSTMGWPDETNEDFQ 473 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ IH + +GRKMSKS GN Sbjct: 474 RYFPT--NTLVTGYDIIFFWVSRMIFQSLEFTGKRPFENVLIHGLIRDEQGRKMSKSLGN 531 Query: 285 FITINELLETKKFGGRSW 302 I E++E W Sbjct: 532 GIDPMEVIEQYGADALRW 549 >gi|309776468|ref|ZP_07671454.1| valine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308915859|gb|EFP61613.1| valine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 875 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 18/124 (14%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E + + Sbjct: 412 GHRIPAWYHKETGEIYVGMQAPADIDNWVQDEDVLDTWFSSALWPFSTLGWPQETADLKR 471 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 ++ D+ G D+IF Q+ C R K ++ IH + +GRKMSKS Sbjct: 472 YFPN---DVLVTGYDIIFFWVARMAFQTRYCMNSRPFK--DVLIHGLVRDAQGRKMSKSL 526 Query: 283 GNFI 286 GN I Sbjct: 527 GNGI 530 >gi|296424993|ref|XP_002842028.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638285|emb|CAZ86219.1| unnamed protein product [Tuber melanosporum] Length = 547 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 I ++ +K++G AP++ A+L + PI+F V + +I+ S PQ+ KG+ Sbjct: 162 AIRTVIASKQYGNEDLLAPLVAQAVLAVLPKNPINFNVDNIRVVKIMGSSLPQSRVVKGM 221 Query: 347 IDP 349 + P Sbjct: 222 VFP 224 >gi|58261734|ref|XP_568277.1| leucine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21] gi|134118365|ref|XP_772196.1| hypothetical protein CNBM1150 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254804|gb|EAL17549.1| hypothetical protein CNBM1150 [Cryptococcus neoformans var. neoformans B-3501A] gi|57230450|gb|AAW46760.1| leucine-tRNA ligase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1114 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH-NGFLNLEGRKMSKSNGNFITIN 289 D+ G DLI P+H A EK + NG L L G+KMSKS GNF+T+ Sbjct: 704 LDVRSSGKDLI-PNHLTFWVYCHAALFPEKHWPKAVRANGHLMLNGKKMSKSTGNFLTMK 762 Query: 290 ELLETKKFG 298 E TKK+G Sbjct: 763 EA--TKKYG 769 >gi|313885106|ref|ZP_07818858.1| valine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619797|gb|EFR31234.1| valine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 877 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ PAD W R + + W S W GW + Sbjct: 412 GHQIPAWYHKETGEVYVGEEAPADEENWDRDSDVLDTWFSSALWPFSTMGWPDKSQNDYQ 471 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ +H + EGRKMSKS GN Sbjct: 472 RYFPTSTLV--TGYDIIFFWVSRMIFQSLEFTGQRPFKNVLLHGLIRDEEGRKMSKSLGN 529 Query: 285 FITINELLETKKFGGRSW 302 I +++E W Sbjct: 530 GIDPMDVIEEYGVDALRW 547 >gi|229152660|ref|ZP_04280848.1| Valyl-tRNA synthetase [Bacillus cereus m1550] gi|228630806|gb|EEK87447.1| Valyl-tRNA synthetase [Bacillus cereus m1550] Length = 867 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ P D W + + W S W GW E SA Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPVDIENWNQDNDVLDTWFSSALWPFSTLGWPNEDSADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|229169200|ref|ZP_04296914.1| Valyl-tRNA synthetase [Bacillus cereus AH621] gi|228614266|gb|EEK71377.1| Valyl-tRNA synthetase [Bacillus cereus AH621] Length = 881 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADLENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 + D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 KFYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 534 GIDPMDVIE--KYGA 546 >gi|116205303|ref|XP_001228462.1| hypothetical protein CHGG_10535 [Chaetomium globosum CBS 148.51] gi|88176663|gb|EAQ84131.1| hypothetical protein CHGG_10535 [Chaetomium globosum CBS 148.51] Length = 1120 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 2/34 (5%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 NG L L G KMSKS GNF+T+N++++ K+G + Sbjct: 745 NGHLQLNGEKMSKSTGNFMTLNDVVQ--KYGADA 776 >gi|260654931|ref|ZP_05860419.1| isoleucine--tRNA ligase [Jonquetella anthropi E3_33 E1] gi|260630246|gb|EEX48440.1| isoleucine--tRNA ligase [Jonquetella anthropi E3_33 E1] Length = 918 Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 7/51 (13%) Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR 317 H F++ EGRKMSKS GN ++ +++E K+G A ++RL + T YR Sbjct: 592 HGFFMDGEGRKMSKSLGNVVSAQKIVE--KYG-----ADILRLWVASTDYR 635 >gi|91782348|ref|YP_557554.1| methionyl-tRNA synthetase [Burkholderia xenovorans LB400] gi|123063115|sp|Q143I7|SYM_BURXL RecName: Full=Methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS gi|91686302|gb|ABE29502.1| methionyl-tRNA synthetase [Burkholderia xenovorans LB400] Length = 710 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 N++ H GFL ++G KMSKS G FIT ++ET Sbjct: 334 NVFAH-GFLTVDGAKMSKSRGTFITAQSVIET 364 >gi|296162307|ref|ZP_06845101.1| methionyl-tRNA synthetase [Burkholderia sp. Ch1-1] gi|295887461|gb|EFG67285.1| methionyl-tRNA synthetase [Burkholderia sp. Ch1-1] Length = 710 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 N++ H GFL ++G KMSKS G FIT ++ET Sbjct: 334 NVFAH-GFLTVDGAKMSKSRGTFITAQSVIET 364 >gi|229087021|ref|ZP_04219175.1| Valyl-tRNA synthetase [Bacillus cereus Rock3-44] gi|228696284|gb|EEL49115.1| Valyl-tRNA synthetase [Bacillus cereus Rock3-44] Length = 881 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 52/135 (38%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNENDEDFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I E++E K+G Sbjct: 534 GIDPMEVIE--KYGA 546 >gi|229013673|ref|ZP_04170802.1| Valyl-tRNA synthetase [Bacillus mycoides DSM 2048] gi|229135303|ref|ZP_04264098.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|228648172|gb|EEL04212.1| Valyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|228747595|gb|EEL97469.1| Valyl-tRNA synthetase [Bacillus mycoides DSM 2048] Length = 867 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADLENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 + D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 KFYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|307728927|ref|YP_003906151.1| methionyl-tRNA synthetase [Burkholderia sp. CCGE1003] gi|307583462|gb|ADN56860.1| methionyl-tRNA synthetase [Burkholderia sp. CCGE1003] Length = 719 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 N++ H GFL ++G KMSKS G FIT +ET Sbjct: 334 NVFAH-GFLTVDGAKMSKSRGTFITAQSFIET 364 >gi|315282473|ref|ZP_07870879.1| valyl-tRNA synthetase [Listeria marthii FSL S4-120] gi|313613881|gb|EFR87619.1| valyl-tRNA synthetase [Listeria marthii FSL S4-120] Length = 883 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLAEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFK 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDXEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|229062152|ref|ZP_04199476.1| Valyl-tRNA synthetase [Bacillus cereus AH603] gi|228717135|gb|EEL68811.1| Valyl-tRNA synthetase [Bacillus cereus AH603] Length = 867 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADLENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 + D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 462 KFYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|159158351|gb|ABW94430.1| CysS [Treponema paraluiscuniculi] gi|159158353|gb|ABW94431.1| CysS [Treponema pallidum subsp. pallidum] gi|159158355|gb|ABW94432.1| CysS [Treponema pallidum subsp. endemicum] gi|159158357|gb|ABW94433.1| CysS [Treponema pallidum subsp. pertenue] gi|159158359|gb|ABW94434.1| CysS [Treponema pallidum subsp. pertenue] gi|159158361|gb|ABW94435.1| CysS [Treponema pallidum subsp. pertenue] gi|159158363|gb|ABW94436.1| CysS [Treponema pallidum subsp. pertenue] gi|159158365|gb|ABW94437.1| CysS [Treponema pallidum subsp. pallidum] gi|159158367|gb|ABW94438.1| CysS [Treponema pallidum subsp. pallidum] gi|159158369|gb|ABW94439.1| CysS [Treponema pallidum subsp. pertenue str. Gauthier] gi|159158371|gb|ABW94440.1| CysS [Treponema pallidum subsp. pertenue] gi|159158373|gb|ABW94441.1| CysS [Treponema pallidum subsp. pallidum] gi|159158375|gb|ABW94442.1| CysS [Treponema pallidum subsp. pallidum] gi|159158377|gb|ABW94443.1| CysS [Treponema pallidum subsp. endemicum] gi|159158379|gb|ABW94444.1| CysS [Treponema pallidum subsp. pallidum] gi|159158381|gb|ABW94445.1| CysS [Treponema pallidum subsp. pallidum str. Mexico A] gi|159158383|gb|ABW94446.1| CysS [Treponema pallidum subsp. pallidum str. Nichols] gi|159158385|gb|ABW94447.1| CysS [Treponema pallidum subsp. pertenue] gi|159158387|gb|ABW94448.1| CysS [Treponema pallidum subsp. pallidum] gi|159158389|gb|ABW94449.1| CysS [Treponema paraluiscuniculi] gi|159158391|gb|ABW94450.1| CysS [Treponema paraluiscuniculi] gi|159158393|gb|ABW94451.1| CysS [Treponema pallidum subsp. pertenue] gi|159158395|gb|ABW94452.1| CysS [Treponema pallidum subsp. pertenue] gi|159158397|gb|ABW94453.1| CysS [Treponema pallidum] Length = 55 Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMG-----TRVPEKYHKKNPADFILW 194 A + FD S P+Y SF +++ + G RV HK++ DF+LW Sbjct: 1 AGGNVYFDVRSFPSYESFGSAAVEDVQEGEDAARARVAHDTHKRDARDFVLW 52 >gi|66808675|ref|XP_638060.1| leucyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74996834|sp|Q54N83|SYLC_DICDI RecName: Full=Leucyl-tRNA synthetase, cytoplasmic; AltName: Full=Leucine--tRNA ligase; Short=LeuRS gi|60466511|gb|EAL64563.1| leucyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 1058 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/21 (71%), Positives = 18/21 (85%) Query: 268 NGFLNLEGRKMSKSNGNFITI 288 NGF+NL G KMSKS GNF+T+ Sbjct: 702 NGFVNLNGEKMSKSTGNFLTL 722 >gi|315124324|ref|YP_004066328.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018046|gb|ADT66139.1| cysteinyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 206 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 79/199 (39%), Gaps = 41/199 (20%) Query: 278 MSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW 337 MSKS N I + L K+F G + +R +L +HYR +++ L A+ L K+ Sbjct: 1 MSKSLNNSFFIKDAL--KEFMGEA-----LRFYLLSSHYRSHFKYSLSDLENAKKRLDKF 53 Query: 338 PQTSTS-----------------KGIIDPAVLSALYNDLNTVSAIQALH--------KLA 372 + K I +L L +DLN A+ L +L Sbjct: 54 YRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEILNDDLNISKALALLDDFISSANLELD 113 Query: 373 RESTKN---HDLLPIFNASAHILGIEVCKEHL------NKNISIAIEKLVQERLILLKMK 423 +ES ++ + A I G L +K IEKL+ ER K K Sbjct: 114 KESKNKILKQNIKEALSELAKIFGFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNK 173 Query: 424 KFSSADYIRKQLESKGFIL 442 F++AD IR+QL SK L Sbjct: 174 DFNTADAIREQLNSKKITL 192 >gi|237734819|ref|ZP_04565300.1| valyl-tRNA synthetase [Mollicutes bacterium D7] gi|229382147|gb|EEO32238.1| valyl-tRNA synthetase [Coprobacillus sp. D7] Length = 874 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 94/256 (36%), Gaps = 40/256 (15%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G +VP YHK+ PAD WK+ + W S W GW S + Sbjct: 412 GHQVPAWYHKETGEVYVGKNPPADLENWKQDEDVLDTWFSSALWPFSTLGWPNTDSELFK 471 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS ++ IH + +GRKMSKS GN Sbjct: 472 RYFPT--NTLVTGYDIIFFWVSRMIFQSLHFTEERPFEHVLIHGLIRDEQGRKMSKSLGN 529 Query: 285 FITINELL-----ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 + +++ +T +F + AP + L + +F + A +L Sbjct: 530 GVDPMDVIDEYGADTLRFFLTTNSAPGMDLRYIPEKLEASWNFINKIWNSARFVLM---- 585 Query: 340 TSTSKGIIDPAVLSAL-YNDLNTVSA--IQALHKLARESTKNHDLLPIFNASAHILG--- 393 I D L +++LN + L+++ RE N D N + + Sbjct: 586 -----NIDDEMKFEELSFDNLNLCDKWILNRLNEVIREVDINMDKFEFVNVGSELYKFIW 640 Query: 394 -------IEVCKEHLN 402 IE+ K HLN Sbjct: 641 DDFCSWYIELTKVHLN 656 >gi|310778463|ref|YP_003966796.1| Isoleucyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] gi|309747786|gb|ADO82448.1| Isoleucyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] Length = 931 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 14/128 (10%) Query: 266 IHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 + +GF+N EG+KMSKS GN ++ +++++T + A ++RL YRE + + Sbjct: 590 LTHGFVNDGEGKKMSKSTGNVMSPDDVIKT-------YGADILRLWCASVDYREDVKISE 642 Query: 325 QRLTEAEILLSKWPQTS----TSKGIIDPAVLSALYNDLNTVS--AIQALHKLARESTKN 378 L + + T+ + DP Y++L + A+ L L R+ T+N Sbjct: 643 NILKQMAEAYRRVRNTARYILGNTNDFDPIKDRVSYDELPEIDRWAMHKLETLKRKVTEN 702 Query: 379 HDLLPIFN 386 ++ +N Sbjct: 703 YNKYEFYN 710 >gi|167755851|ref|ZP_02427978.1| hypothetical protein CLORAM_01368 [Clostridium ramosum DSM 1402] gi|167704790|gb|EDS19369.1| hypothetical protein CLORAM_01368 [Clostridium ramosum DSM 1402] Length = 873 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 94/256 (36%), Gaps = 40/256 (15%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G +VP YHK+ PAD WK+ + W S W GW S + Sbjct: 411 GHQVPAWYHKETGEVYVGKNPPADLENWKQDEDVLDTWFSSALWPFSTLGWPNTDSELFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS ++ IH + +GRKMSKS GN Sbjct: 471 RYFPT--NTLVTGYDIIFFWVSRMIFQSLHFTEERPFEHVLIHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELL-----ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 + +++ +T +F + AP + L + +F + A +L Sbjct: 529 GVDPMDVIDEYGADTLRFFLTTNSAPGMDLRYIPEKLEASWNFINKIWNSARFVLM---- 584 Query: 340 TSTSKGIIDPAVLSAL-YNDLNTVSA--IQALHKLARESTKNHDLLPIFNASAHILG--- 393 I D L +++LN + L+++ RE N D N + + Sbjct: 585 -----NIDDEMKFEELSFDNLNLCDKWILNRLNEVIREVDINMDKFEFVNVGSELYKFIW 639 Query: 394 -------IEVCKEHLN 402 IE+ K HLN Sbjct: 640 DDFCSWYIELTKVHLN 655 >gi|85110062|ref|XP_963218.1| hypothetical protein NCU09463 [Neurospora crassa OR74A] gi|135140|sp|P10857|SYLC_NEUCR RecName: Full=Leucyl-tRNA synthetase, cytoplasmic; AltName: Full=Leucine--tRNA ligase; Short=LeuRS gi|168832|gb|AAA33593.1| leucyl-tRNA synthetase [Neurospora crassa] gi|28924888|gb|EAA33982.1| hypothetical protein NCU09463 [Neurospora crassa OR74A] gi|38524246|emb|CAE75711.1| leucine--tRNA ligase, cytosolic [Neurospora crassa] Length = 1123 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 2/34 (5%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 NG L L G KMSKS GNF+T+++++ KK+G + Sbjct: 748 NGHLQLNGEKMSKSTGNFMTLDDVV--KKYGADA 779 >gi|289620721|emb|CBI52731.1| unnamed protein product [Sordaria macrospora] Length = 1105 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 2/32 (6%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 NG L L G KMSKS GNF+T+++++ KK+G Sbjct: 730 NGHLQLNGEKMSKSTGNFMTLDDVV--KKYGA 759 >gi|213404928|ref|XP_002173236.1| leucyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] gi|212001283|gb|EEB06943.1| leucyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] Length = 1112 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH-NGFLNLEGRKMSKSNGNFITIN 289 FDI G DL+ P+H + A EK I NG L + G KMSKS GNF+T++ Sbjct: 693 FDIRVSGKDLV-PNHLTFCLYTHAAIFDEKFWPKGIRANGHLLMNGEKMSKSTGNFMTLH 751 Query: 290 ELLETKKFG 298 E KK+G Sbjct: 752 E--ACKKYG 758 >gi|313897678|ref|ZP_07831220.1| valine--tRNA ligase [Clostridium sp. HGF2] gi|312957630|gb|EFR39256.1| valine--tRNA ligase [Clostridium sp. HGF2] Length = 874 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 18/124 (14%) Query: 176 GTRVPEKYHKK---------NPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ +P D W + + W S W GW E ++ Sbjct: 412 GHRIPAWYHKETGEIYVGMEDPQDLENWIQDEDVLDTWFSSALWPFSTLGWPKETDDLNR 471 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQS--CCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 ++ D+ G D+IF Q+ C +R K ++ IH + +GRKMSKS Sbjct: 472 YFPN---DVLVTGYDIIFFWVARMAFQTRYCMKNRPFK--DVLIHGLVRDAQGRKMSKSL 526 Query: 283 GNFI 286 GN I Sbjct: 527 GNGI 530 >gi|317051698|ref|YP_004112814.1| isoleucyl-tRNA synthetase [Desulfurispirillum indicum S5] gi|316946782|gb|ADU66258.1| isoleucyl-tRNA synthetase [Desulfurispirillum indicum S5] Length = 925 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 16/149 (10%) Query: 263 NIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI-- 320 + H L+ +GRKMSKS GN + + ++ KK+G A ++RL + YR+ + Sbjct: 589 TVLTHGFVLDGKGRKMSKSMGNVVAPDAII--KKYG-----ADILRLWVAAEDYRDDLRI 641 Query: 321 -DFTVQRLTEAEILLSKWPQTSTSKGI-IDPAVLSALYNDL-----NTVSAIQALHKLAR 373 D + RL E+ + + +P + LY D+ ++ A K Sbjct: 642 SDEIINRLAESYRRIRNTARYMLGNLYDFNPLTDAILYGDMLEFDRYALARYHAFEKRVL 701 Query: 374 ESTKNHDLLPIFNASAHILGIEVCKEHLN 402 ++ +N++ I++A + +++ ++L+ Sbjct: 702 DAYENYEFHVIYHACNNFCSVDMSAQYLD 730 >gi|145606256|ref|XP_365730.2| hypothetical protein MGG_02432 [Magnaporthe oryzae 70-15] gi|145013967|gb|EDJ98608.1| hypothetical protein MGG_02432 [Magnaporthe oryzae 70-15] Length = 1106 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 7/44 (15%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 NG L + G KMSKS GNF+T++E T+K+G A +R+A+ Sbjct: 729 NGHLMMNGEKMSKSTGNFMTLDEA--TRKYG-----ADALRMAI 765 >gi|332638500|ref|ZP_08417363.1| valyl-tRNA synthetase [Weissella cibaria KACC 11862] Length = 887 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 101/262 (38%), Gaps = 39/262 (14%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ P D W++ + + W S W GW E +A Sbjct: 419 GHQIPAWYHKQTGEMYVGMEAPEDIENWEQDSDVLDTWFSSALWPFSTMGWPDEDAADFK 478 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF + QS N+ IH + +GRKMSKS GN Sbjct: 479 RYFPT--NTLVTGYDIIFFWVARMMFQSKEFTGRRPFKNVLIHGLIRDEQGRKMSKSLGN 536 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID--FTVQRLTEAEILLSK-WPQTS 341 I +++E K+G A +R L T +D F+ ++ A ++K W + Sbjct: 537 GIDPMDVIE--KYG-----ADALRW-FLATGSTPGLDVRFSYTKMDSAWNFINKIWNASR 588 Query: 342 TSKGIIDPAVLSALYNDLNTVSA-----IQALHKLARESTKNHDLLPIFNASAHILG--- 393 +D + L DL+ ++ + L++ TKN D A + Sbjct: 589 YVILNLDDETKAELPADLSVLTLADKWILSRLNETIASVTKNFDKFEFGEAGRSLYNFIW 648 Query: 394 -------IEVCKEHLNKNISIA 408 IE+ KE LN N A Sbjct: 649 NDFADWYIEMTKETLNGNDEAA 670 >gi|320588787|gb|EFX01255.1| leucyl-tRNA synthetase [Grosmannia clavigera kw1407] Length = 1106 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 19/82 (23%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-------MTHYREPI 320 NG L + G+KMSKS GNF+T+ E T+KFG A R+A+ ++ E + Sbjct: 730 NGHLLVNGQKMSKSTGNFLTLRE--STEKFG-----ADATRIALADAGDGIEDANFEETV 782 Query: 321 -DFTVQRLTEAEILLSKWPQTS 341 + T+ RL E L KW Q + Sbjct: 783 ANATILRLYE----LRKWAQET 800 >gi|85712085|ref|ZP_01043138.1| Methionyl-tRNA synthetase [Idiomarina baltica OS145] gi|85694075|gb|EAQ32020.1| Methionyl-tRNA synthetase [Idiomarina baltica OS145] Length = 680 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 W + +A H++GK D+I+ H A A + + N+W H GF+ + Sbjct: 281 WQADSTAEVYHFIGK---------DIIYFHSLFWPAMLKGA-QFRQPTNVWAH-GFITVN 329 Query: 275 GRKMSKSNGNFITINELLE 293 G KMSKS G FI L+ Sbjct: 330 GTKMSKSKGTFIKARTYLD 348 >gi|213025899|ref|ZP_03340346.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 52 Score = 37.4 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 S CA E N W+H+G + ++ KMSKS GNF T+ ++L+ Sbjct: 2 STCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK 42 >gi|293390593|ref|ZP_06634927.1| methionyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951127|gb|EFE01246.1| methionyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 686 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 11/72 (15%) Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WH + A H++GK D+++ H A AD K +NI++H G++ + Sbjct: 281 WHKDSDAELYHFIGK---------DIMYFHSLFWPAMLEGAD-FRKPSNIFVH-GYVTVN 329 Query: 275 GRKMSKSNGNFI 286 G KMSKS G FI Sbjct: 330 GEKMSKSRGTFI 341 >gi|239616422|ref|YP_002939744.1| isoleucyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] gi|259511506|sp|C5CHA1|SYI_KOSOT RecName: Full=Isoleucyl-tRNA synthetase; AltName: Full=Isoleucine--tRNA ligase; Short=IleRS gi|239505253|gb|ACR78740.1| isoleucyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] Length = 921 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 35/144 (24%) Query: 266 IHNGFLNLE-GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324 I +GF+N E GRKMSKS GN + E+ K+G A ++RL + ++Y+E I ++ Sbjct: 580 ITHGFINDEQGRKMSKSLGNAVDPQEI--NNKYG-----AEILRLWVASSNYQEDIRISM 632 Query: 325 QRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS----------------AIQAL 368 + + Q K I + L L +L+ S AI L Sbjct: 633 NIIQQ---------QIENYKKIRN--TLRYLLGNLSDYSPQDSVPYEELLELDKWAIMKL 681 Query: 369 HKLARESTKNHDLLPIFNASAHIL 392 HKL R+ T+ +D + IL Sbjct: 682 HKLIRDVTRYYDRYEFYKVFQSIL 705 >gi|46123263|ref|XP_386185.1| hypothetical protein FG06009.1 [Gibberella zeae PH-1] Length = 1116 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 NG L L G KMSKS GNF+T+ +L T+K+G + Sbjct: 740 NGHLMLNGEKMSKSTGNFMTLRDL--TQKYGADA 771 >gi|308174506|ref|YP_003921211.1| valyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|307607370|emb|CBI43741.1| valyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|328554425|gb|AEB24917.1| valyl-tRNA synthetase [Bacillus amyloliquefaciens TA208] gi|328912829|gb|AEB64425.1| valyl-tRNA synthetase [Bacillus amyloliquefaciens LL3] Length = 880 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ P D W++ + + W S W GW E + Sbjct: 415 GHRIPAWYHKETKEVYVGLEAPEDSENWEQDSDVLDTWFSSALWPFSTMGWPDENAEDFK 474 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D+ G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 475 RYYST--DVLVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLIRDEQGRKMSKSLGN 532 Query: 285 FITINELLETKKFGGRS 301 + ++++ K+G S Sbjct: 533 GVDPMDVID--KYGADS 547 >gi|154686944|ref|YP_001422105.1| valyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42] gi|154352795|gb|ABS74874.1| ValS [Bacillus amyloliquefaciens FZB42] Length = 880 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ P D W++ + + W S W GW E + Sbjct: 415 GHRIPAWYHKETKEVYVGLEAPEDSENWEQDSDVLDTWFSSALWPFSTMGWPDENAEDFK 474 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D+ G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 475 RYYST--DVLVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLIRDEQGRKMSKSLGN 532 Query: 285 FITINELLETKKFGGRS 301 + ++++ K+G S Sbjct: 533 GVDPMDVID--KYGADS 547 >gi|291333442|gb|ADD93144.1| putative tRNA synthetases class I I L M and V [uncultured archaeon MedDCM-OCT-S05-C57] Length = 953 Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 +D+ G DLI H + E + NG++ ++G KMSKS GNF T+ E Sbjct: 581 YDLRVSGKDLIQNHLSFSLYNHTAMFEKEMWPKGFAVNGWVLVDGEKMSKSKGNFFTLKE 640 Query: 291 LLETKKFGGRSWPAPVIRLAM 311 L+ ++ A V+R + Sbjct: 641 LV-------TNYSADVVRFTL 654 >gi|163791284|ref|ZP_02185698.1| valyl-tRNA synthetase [Carnobacterium sp. AT7] gi|159873425|gb|EDP67515.1| valyl-tRNA synthetase [Carnobacterium sp. AT7] Length = 877 Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK + P D W + + W S W GW E S Sbjct: 410 GHRIPAWYHKTSGELYVGMEAPEDSENWMQDPDVLDTWFSSALWPFSTMGWPDEESEDFK 469 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF + QS N+ IH + EGRKMSKS GN Sbjct: 470 RYFPT--NTLVTGYDIIFFWVSRMMFQSLEFTGKRPFNNVLIHGLIRDTEGRKMSKSLGN 527 Query: 285 FITINELLETKKFGGRS 301 I +++E K+G + Sbjct: 528 GIDPMDVIE--KYGADA 542 >gi|47096717|ref|ZP_00234302.1| valyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|254898281|ref|ZP_05258205.1| valyl-tRNA synthetase [Listeria monocytogenes J0161] gi|254912226|ref|ZP_05262238.1| valyl-tRNA synthetase [Listeria monocytogenes J2818] gi|254936554|ref|ZP_05268251.1| valyl-tRNA synthetase [Listeria monocytogenes F6900] gi|47014901|gb|EAL05849.1| valyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|258609148|gb|EEW21756.1| valyl-tRNA synthetase [Listeria monocytogenes F6900] gi|293590201|gb|EFF98535.1| valyl-tRNA synthetase [Listeria monocytogenes J2818] Length = 883 Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLSEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFQ 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDSEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|325989806|ref|YP_004249505.1| Valyl-tRNA synthetase [Mycoplasma suis KI3806] gi|323574891|emb|CBZ40551.1| Valyl-tRNA synthetase [Mycoplasma suis] Length = 833 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 F G D++FP I S + NI++H N +G KMSKS GN I E Sbjct: 436 FSTLVSGKDILFPWISRMIYLSLHFNAKPPFKNIFLHGILRNSQGEKMSKSLGNGILPEE 495 Query: 291 LLETKKFGGRSWPAPVIRLAMLM-THYREPIDFT 323 L + + VIR A L TH+ I ++ Sbjct: 496 LYS-------KYSSDVIRFAFLSNTHFDRDIKYS 522 >gi|254831953|ref|ZP_05236608.1| valyl-tRNA synthetase [Listeria monocytogenes 10403S] Length = 883 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLSEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFQ 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDSEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|254828213|ref|ZP_05232900.1| valyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] gi|258600602|gb|EEW13927.1| valyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] Length = 883 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLSEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFQ 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDSEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|284801943|ref|YP_003413808.1| valyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284995085|ref|YP_003416853.1| valyl-tRNA synthetase [Listeria monocytogenes 08-5923] gi|284057505|gb|ADB68446.1| valyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284060552|gb|ADB71491.1| valyl-tRNA synthetase [Listeria monocytogenes 08-5923] Length = 883 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLSEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFQ 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDSEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|224499788|ref|ZP_03668137.1| valyl-tRNA synthetase [Listeria monocytogenes Finland 1988] Length = 883 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLSEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFQ 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDSEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|16803592|ref|NP_465077.1| valyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|224501508|ref|ZP_03669815.1| valyl-tRNA synthetase [Listeria monocytogenes FSL R2-561] gi|81508987|sp|Q8Y6X9|SYV_LISMO RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|16410981|emb|CAC99630.1| valyl-tRNA synthetase [Listeria monocytogenes EGD-e] Length = 883 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK K P + W++ + W S W GW S Sbjct: 417 GHRIPAWYHKETGEIYVGEKEPENLSEWEQDEDVLDTWFSSALWPFSTMGWPDTESPDFQ 476 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 H+ + G D+IF I QS + IH + EGRKMSKS GN Sbjct: 477 HFFPT--NTLVTGYDIIFFWVSRMIFQSVEFTGERPFKDTLIHGLVRDSEGRKMSKSLGN 534 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 535 GVDPIEVID--KYGADS 549 >gi|228929504|ref|ZP_04092524.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830184|gb|EEM75801.1| Valyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 867 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W + + W S W GW E +A Sbjct: 402 GHRIPAWYHKETGEVYVGTEAPADIENWNQDNDVLDTWFSSALWPFSTLGWPNEDAADFK 461 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +G KMSKS GN Sbjct: 462 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGHKMSKSLGN 519 Query: 285 FITINELLETKKFGG 299 I +++E K+G Sbjct: 520 GIDPMDVIE--KYGA 532 >gi|229543663|ref|ZP_04432723.1| valyl-tRNA synthetase [Bacillus coagulans 36D1] gi|229328083|gb|EEN93758.1| valyl-tRNA synthetase [Bacillus coagulans 36D1] Length = 881 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ P D W++ + W S W GW E + Sbjct: 415 GHRIPAWYHKETGEVYVDTEPPRDIENWEQDPDVLDTWFSSALWPFSTMGWPDEEAKDYK 474 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 475 RYYPT--DTLVTGYDIIFFWVSRMIFQGLAFTGKRPFKDVLIHGLVRDEQGRKMSKSLGN 532 Query: 285 FITINELLETKKFGGRS 301 + E+++ K+G S Sbjct: 533 GVDPMEVID--KYGADS 547 >gi|300214744|gb|ADJ79160.1| Valyl-tRNA synthetase [Lactobacillus salivarius CECT 5713] Length = 886 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G ++P YHK+ P D W++ + + W S W GW S Sbjct: 419 GHQIPAWYHKETGEIYVGEEAPEDIENWEQDSDVLDTWFSSALWSFSTMGWPDTESPDFK 478 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS + N+ IH + +GRKMSKS GN Sbjct: 479 RYFPT--NTLVTGYDIIFFWVSRMIFQSVEFTKRRPFKNVLIHGLIRDEQGRKMSKSLGN 536 Query: 285 FITINELLETKKFGGRS 301 I ++++ K+G + Sbjct: 537 GIDPMDVID--KYGADA 551 >gi|15615600|ref|NP_243904.1| valyl-tRNA synthetase [Bacillus halodurans C-125] gi|12585349|sp|Q9K8G8|SYV_BACHD RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA ligase; Short=ValRS gi|10175660|dbj|BAB06757.1| valyl-tRNA synthetase [Bacillus halodurans C-125] Length = 880 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ P D WK+ + W S W GW E + Sbjct: 415 GHRIPAWYHKETGEVYVGHEAPQDIDNWKQDEDVLDTWFSSALWPFSTMGWPDEEAPDYK 474 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + EG+KMSKS GN Sbjct: 475 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGQPPFKDVLIHGLVRDAEGQKMSKSLGN 532 Query: 285 FITINELLETKKFGG 299 + E+++ K+G Sbjct: 533 GVDPMEVID--KYGA 545 >gi|41615033|ref|NP_963531.1| leucyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M] gi|48428516|sp|P61760|SYL_NANEQ RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA ligase; Short=LeuRS gi|40068757|gb|AAR39092.1| NEQ239 [Nanoarchaeum equitans Kin4-M] Length = 977 Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust. Identities = 15/26 (57%), Positives = 20/26 (76%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLE 293 +GF+ + G KMSKS GNFITI E ++ Sbjct: 690 SGFVTVNGEKMSKSKGNFITIREAIQ 715 >gi|295698760|ref|YP_003603415.1| methionyl-tRNA synthetase [Candidatus Riesia pediculicola USDA] gi|291157378|gb|ADD79823.1| methionyl-tRNA synthetase [Candidatus Riesia pediculicola USDA] Length = 543 Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 + K NI++H G L ++G+KMSKS GNFI+ N L+ Sbjct: 310 KYRKPNNIFVH-GHLTVDGQKMSKSKGNFISANSYLK 345 >gi|303389510|ref|XP_003072987.1| leucyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506] gi|303302131|gb|ADM11627.1| leucyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506] Length = 873 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 NG+L L KMSKS+GNF+T++E L KFG S Sbjct: 535 NGYLMLNSEKMSKSSGNFLTVDESL--AKFGVSS 566 >gi|321456139|gb|EFX67254.1| hypothetical protein DAPPUDRAFT_189542 [Daphnia pulex] Length = 965 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 228 GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 GK D + G+D ++ + S + NI++H L+ EGRKMSKS GN I Sbjct: 570 GKQADFYLEGIDQFGGWFQSSLLTSVASSGHAPYKNIFVHGFVLDHEGRKMSKSLGNVID 629 Query: 288 INELLETKKFGGRSWPA 304 + +L+ G+ PA Sbjct: 630 PHLILDGD---GKKQPA 643 >gi|261418346|ref|YP_003252028.1| valyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|319767695|ref|YP_004133196.1| valyl-tRNA synthetase [Geobacillus sp. Y412MC52] gi|261374803|gb|ACX77546.1| valyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|317112561|gb|ADU95053.1| valyl-tRNA synthetase [Geobacillus sp. Y412MC52] Length = 880 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 15/123 (12%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGW-HIECSAMS 223 G R+P YHK+ PAD W++ + W S W GW +E Sbjct: 415 GHRIPAWYHKETGEIYVDHEPPADIENWEQDPDVLDTWFSSALWPFSTMGWPDVESPDYK 474 Query: 224 SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +Y D+ G D+IF I Q ++ IH + +GRKMSKS G Sbjct: 475 RYY---PTDVLVTGYDIIFFWVSRMIFQGLEFTGKRPFKDVLIHGLVRDAQGRKMSKSLG 531 Query: 284 NFI 286 N + Sbjct: 532 NGV 534 >gi|321265103|ref|XP_003197268.1| leucine-tRNA ligase [Cryptococcus gattii WM276] gi|317463747|gb|ADV25481.1| Leucine-tRNA ligase, putative [Cryptococcus gattii WM276] Length = 1114 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 2/31 (6%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFG 298 NG L L G+KMSKS GNF+T+ E T K+G Sbjct: 741 NGHLMLNGKKMSKSTGNFLTMKEA--TNKYG 769 >gi|323342873|ref|ZP_08083105.1| valine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463985|gb|EFY09179.1| valine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 861 Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 14/130 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P +HK+ P D W++ + W S W GW + Sbjct: 411 GHRIPAWFHKETEEIYVGLEAPEDIENWRQDEDVLDTWFSSALWPFSTLGWPENTEDLER 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +Y V G D+IF Q+ ++ IH + +GRKMSKS GN Sbjct: 471 YYPTNVL---VTGYDIIFFWVARMAFQARYFTNSRPFEDVLIHGLIRDQDGRKMSKSLGN 527 Query: 285 FITINELLET 294 + +++ET Sbjct: 528 GVDPMDVIET 537 >gi|171689796|ref|XP_001909838.1| hypothetical protein [Podospora anserina S mat+] gi|170944860|emb|CAP70972.1| unnamed protein product [Podospora anserina S mat+] Length = 1088 Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 2/34 (5%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 NG L L G KM+KS GNF+T+++++ KK+G + Sbjct: 713 NGHLQLNGAKMAKSTGNFMTLDDVV--KKYGADA 744 >gi|300811354|ref|ZP_07091851.1| valine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497718|gb|EFK32743.1| valine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 879 Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+K+ PAD W + + W S W GW E SA Sbjct: 411 GHRIPAWYNKQTGEMYVGEEAPADIENWDQDQDVLDTWFSSALWPFSTLGWPDEDSADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTGERPFDNVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I ++++ K+G + Sbjct: 529 GIDPMDIID--KYGADA 543 >gi|325125475|gb|ADY84805.1| Valine-tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 879 Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+K+ PAD W + + W S W GW E SA Sbjct: 411 GHRIPAWYNKQTGEMYVGEEAPADIENWDQDQDVLDTWFSSALWPFSTLGWPDEDSADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTGERPFDNVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I ++++ K+G + Sbjct: 529 GIDPMDVID--KYGADA 543 >gi|325973370|ref|YP_004250434.1| valyl-tRNA synthetase [Mycoplasma suis str. Illinois] gi|323651972|gb|ADX98054.1| valyl-tRNA synthetase [Mycoplasma suis str. Illinois] Length = 833 Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 F G D++FP I S + NI++H N +G KMSKS GN I E Sbjct: 436 FSTLVSGKDILFPWISRMIYLSLHFNAKPPFKNIFLHGILRNSKGEKMSKSLGNGILPEE 495 Query: 291 LLETKKFGGRSWPAPVIRLAMLM-THYREPIDFT 323 L + + VIR A L TH+ I ++ Sbjct: 496 LYS-------KYSSDVIRFAFLSNTHFDRDIKYS 522 >gi|152976875|ref|YP_001376392.1| valyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025627|gb|ABS23397.1| valyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98] Length = 881 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK+ PAD W++ + W S W GW E + Sbjct: 416 GHRIPAWYHKETGEVYVGTEAPADIENWEQDNDVLDTWFSSALWPFSTLGWPNEDAKDFK 475 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y D G D+IF I Q ++ IH + +GRKMSKS GN Sbjct: 476 RYYST--DALVTGYDIIFFWVSRMIFQGLEFTGERPFKDVLIHGLVRDEQGRKMSKSLGN 533 Query: 285 FITINELLETKKFGG 299 I ++++ K+G Sbjct: 534 GIDPMDVID--KYGA 546 >gi|313123426|ref|YP_004033685.1| valyl-tRNA synthetase (valine--tRNA ligase) (valrs) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279989|gb|ADQ60708.1| Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 879 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+K+ PAD W + + W S W GW E SA Sbjct: 411 GHRIPAWYNKQTGEMYVGEEAPADIENWDQDQDVLDTWFSSALWPFSTLGWPDEDSADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTGERPFDNVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I ++++ K+G + Sbjct: 529 GIDPMDVID--KYGADA 543 >gi|325684336|gb|EGD26505.1| valine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 879 Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 15/137 (10%) Query: 176 GTRVPEKYHKKN---------PADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P Y+K+ PAD W + + W S W GW E SA Sbjct: 411 GHRIPAWYNKQTGEMYVGEEAPADIENWDQDQDVLDTWFSSALWPFSTLGWPDEDSADFK 470 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 Y + G D+IF I QS N+ +H + +GRKMSKS GN Sbjct: 471 RYFPT--NALVTGYDIIFFWVSRMIFQSLHFTGERPFDNVVLHGLIRDEQGRKMSKSLGN 528 Query: 285 FITINELLETKKFGGRS 301 I ++++ K+G + Sbjct: 529 GIDPMDVID--KYGADA 543 >gi|283769125|ref|ZP_06342030.1| valine--tRNA ligase [Bulleidia extructa W1219] gi|283104311|gb|EFC05689.1| valine--tRNA ligase [Bulleidia extructa W1219] Length = 871 Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 14/129 (10%) Query: 176 GTRVPEKYHK---------KNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSS 224 G R+P YHK + P D W++ + W S W GW E Sbjct: 412 GHRIPAWYHKDTKEIYVGQEAPQDIENWRQDEDVLDTWFSSALWPFSTLGWPKETEDFKR 471 Query: 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 +Y + G G D+IF Q+ ++ +H + +GRKMSKS GN Sbjct: 472 YYPNSMM---GTGYDIIFFWVARMAFQARHFTGQAPFKDVVLHGLIRDAKGRKMSKSLGN 528 Query: 285 FITINELLE 293 I E+++ Sbjct: 529 GIDPMEVID 537 >gi|315426839|dbj|BAJ48460.1| leucyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum] Length = 978 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 NG + +EG KMSKS GNF+T+ + L + RLA+L++ Sbjct: 640 NGMITIEGNKMSKSRGNFVTLKQALARHG-------SDATRLALLLS 679 >gi|315428060|dbj|BAJ49648.1| leucyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum] Length = 978 Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%) Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 NG + +EG KMSKS GNF+T+ + L + RLA+L++ Sbjct: 640 NGMITIEGNKMSKSRGNFVTLKQALARHG-------SDATRLALLLS 679 >gi|167042850|gb|ABZ07567.1| putative tRNA synthetases class I (I, L, M and V) [uncultured marine microorganism HF4000_ANIW137J11] Length = 1212 Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 +D+ G DLI H + +K + NG++ + G KMSKS GNF TI + Sbjct: 840 YDLRVSGKDLIQNHLSFSLFNHTAVFSRDKWPRGFAVNGWVLVNGEKMSKSRGNFYTIRQ 899 Query: 291 LLE 293 L++ Sbjct: 900 LID 902 Searching..................................................done Results from round 2 >gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] gi|254040250|gb|ACT57046.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 461/461 (100%), Positives = 461/461 (100%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY Sbjct: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT Sbjct: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP Sbjct: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL Sbjct: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR Sbjct: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN Sbjct: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL Sbjct: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP Sbjct: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 >gi|315121767|ref|YP_004062256.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495169|gb|ADR51768.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 461 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 373/460 (81%), Positives = 418/460 (90%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+K IK+YNTL+R+ EFQAIDPSN+RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR++ Sbjct: 1 MQKNIKLYNTLKRETIEFQAIDPSNVRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRHH 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE+CVTYVRNITDIDDKIIERAR++HPSI I++AI +IT KN +QF+ DTT+L CL PT Sbjct: 61 YGEQCVTYVRNITDIDDKIIERARRDHPSIAIDNAICMITEKNIKQFILDTTKLGCLIPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 HQPRAT +IPQMI LI+ II HGHAYE+NNEI+FDT+S PNYGS S+RKIDEQK G RVP Sbjct: 121 HQPRATEYIPQMINLIEKIISHGHAYESNNEILFDTNSAPNYGSLSQRKIDEQKTGARVP 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 EKYHKKNPADF+LWK S+ EPGWESPWG GRPGWHIECSAMSS++LGK+FDIHGGGLDL Sbjct: 181 EKYHKKNPADFVLWKTSSEEEPGWESPWGIGRPGWHIECSAMSSYHLGKLFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQSCCA R +K AN+WIHNGFLNLEG KMSKSNGNFITINELLETKKFGG+ Sbjct: 241 IFPHHENEIAQSCCAYRTDKIANVWIHNGFLNLEGHKMSKSNGNFITINELLETKKFGGQ 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 +WPAPVIRLAMLMT YREPIDFTVQRL EAEILLSKWP T+ S+G DPAVLSAL+NDLN Sbjct: 301 AWPAPVIRLAMLMTSYREPIDFTVQRLQEAEILLSKWPPTTESRGKPDPAVLSALFNDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TVSAIQALHKLARES KN DLLP FNASA+ILGIEV +E L+KN+SIAIEKLVQERL+LL Sbjct: 361 TVSAIQALHKLARESIKNPDLLPTFNASANILGIEVREEPLSKNLSIAIEKLVQERLLLL 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K+K FS+AD IR+QLE KGF+LEDYK+P + QRMTRWKQK Sbjct: 421 KIKNFSAADSIREQLECKGFVLEDYKDPKSKQRMTRWKQK 460 >gi|150395937|ref|YP_001326404.1| cysteinyl-tRNA synthetase [Sinorhizobium medicae WSM419] gi|187631642|sp|A6U7D9|SYC_SINMW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150027452|gb|ABR59569.1| cysteinyl-tRNA synthetase [Sinorhizobium medicae WSM419] Length = 466 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 276/456 (60%), Positives = 349/456 (76%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ T+F+ IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 LKLYNTLTREKTDFRPIDPKNVRMYVCGPTVYDFAHIGNARPIIVFDVLFRLLRHVYGTD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T + +F++D L CL PT QPR Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTERTETRFLEDAALLGCLDPTVQPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IP MI +I+ +I GHAYEA E++FDT S+ YG S+R +DEQ+ G RV + H Sbjct: 127 ATENIPGMIEIIETLIAKGHAYEAEGEVLFDTRSMAEYGQLSKRNLDEQQAGARVAVEAH 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S EPGWESPWGRGRPGWHIECSAMS YLG+VFDIHGGG+DLIFPH Sbjct: 187 KRNPGDFVLWKLSAGHEPGWESPWGRGRPGWHIECSAMSGRYLGEVFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN+W+HNGFL +EGRKMSKS GNFITI +LL T+KFGGR WP Sbjct: 247 HENEIAQSRCAHGTAVMANVWMHNGFLQVEGRKMSKSEGNFITIYDLLHTEKFGGRKWPG 306 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLSKWP ++ G DPAV++AL +DLNTV+A Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVHGSASGEADPAVVAALTDDLNTVAA 366 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA+++T + L F ASA +LG+E + L++ + I+ V+ERL LLK K Sbjct: 367 IQALHALAQKATADARHLGAFAASAALLGVEPKEIELDEAVVQEIDGRVRERLELLKSKN 426 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462 >gi|307946682|ref|ZP_07662017.1| cysteinyl-tRNA synthetase [Roseibium sp. TrichSKD4] gi|307770346|gb|EFO29572.1| cysteinyl-tRNA synthetase [Roseibium sp. TrichSKD4] Length = 477 Score = 636 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 267/458 (58%), Positives = 346/458 (75%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++ NTL R +F I +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLL + YG Sbjct: 19 KGLRVTNTLTRTKEDFVPISDANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLNHLYG 78 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA ++HP +P+N+AI+ +T + QF D RL CL PTH+ Sbjct: 79 GENVTYARNITDVDDKINARALRDHPDLPLNEAIAKVTERTANQFHVDIARLGCLEPTHE 138 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI MI +I +I G+AY A+ E++FDT+S+P YG S+R +DEQK G R+ + Sbjct: 139 PRATGHIGGMIAMIDTLIAKGNAYVASGEVLFDTTSMPAYGGLSKRNLDEQKAGARIAVE 198 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HKKNPADF+LWK S+ EPGW+SPWGRGRPGWHIECS MS H+LGKVFDIHGGGLDLIF Sbjct: 199 AHKKNPADFVLWKLSSDEEPGWDSPWGRGRPGWHIECSVMSEHHLGKVFDIHGGGLDLIF 258 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA+ +K +N W+HNGFL +EGRKMSKS GNF TI+ELL+ + FGGR W Sbjct: 259 PHHENEIAQSCCANGTKKMSNYWMHNGFLQVEGRKMSKSEGNFFTIHELLDDETFGGRKW 318 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 P V+RLAMLMTHYREPIDF+ +RL EAE LLSKWP + A+L AL +DLNTV Sbjct: 319 PGEVLRLAMLMTHYREPIDFSKKRLEEAERLLSKWPAPIETDAAPSEAILEALTDDLNTV 378 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422 +AIQ LH+LA E+ +N ++L +++ASA +LG++ K ++ + +I+ V ERL LK Sbjct: 379 AAIQVLHQLAAEAAQNPEMLGVYSASAALLGVQPVKADTSELDTSSIDARVSERLEQLKA 438 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ AD IR +L ++G +L+D K+ + G+R+T W+ K Sbjct: 439 KNWAEADRIRDELAAEGILLKDGKDAETGERVTTWEVK 476 >gi|307300935|ref|ZP_07580704.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti BL225C] gi|306903890|gb|EFN34476.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti BL225C] Length = 466 Score = 636 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 276/456 (60%), Positives = 347/456 (76%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 LKLYNTLTREKADFRPIDPQNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGAD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T K QF++D T L CL PT QPR Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTEKTETQFLEDATVLGCLDPTVQPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI +I+ +I GHAYEA E++FDT S+ +YG S+R +DEQ+ G RV + H Sbjct: 127 ATENIAGMIEIIEKLIAKGHAYEAEGEVLFDTRSMDDYGQLSKRNLDEQQAGARVAVEAH 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGG+DLIFPH Sbjct: 187 KKNPGDFVLWKLSAEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNFITI ELL T+KFGGR WP Sbjct: 247 HENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFITIYELLHTEKFGGRKWPG 306 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLSKWP + G DPAV++AL +DLNTV+A Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVYGDAAGEADPAVVTALADDLNTVAA 366 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA++++ + L F ASA +LG+ + L++ + I+ V+ERL LLK K Sbjct: 367 IQALHALAQKASADSRHLGTFAASAALLGLVPKEVELDEAVVHEIDGRVRERLELLKAKN 426 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462 >gi|15964864|ref|NP_385217.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti 1021] gi|307321838|ref|ZP_07601224.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti AK83] gi|21264014|sp|Q92R20|SYC_RHIME RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15074043|emb|CAC45690.1| Probable cysteinyl-tRNA synthetase [Sinorhizobium meliloti 1021] gi|306892507|gb|EFN23307.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti AK83] Length = 466 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 276/456 (60%), Positives = 347/456 (76%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG Sbjct: 7 LKLYNTLTREKADFRPIDPQNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGAD 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKI RA +++P +P+N+AI +T K QF++D T L CL PT QPR Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTEKTETQFLEDATVLGCLDPTVQPR 126 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI +I+ +I GHAYEA E++FDT S+ +YG S+R +DEQ+ G RV + H Sbjct: 127 ATENIAGMIEIIEKLIAKGHAYEAEGEVLFDTRSMDDYGQLSKRNLDEQQAGARVAVEAH 186 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGG+DLIFPH Sbjct: 187 KKNPGDFVLWKLSAEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGIDLIFPH 246 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNFITI ELL T+KFGGR WP Sbjct: 247 HENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFITIYELLHTEKFGGRKWPG 306 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364 V+RLAMLMTHYREPIDF+++RL EAE LLSKWP + G DPAV++AL +DLNTV+A Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVYGDAAGEADPAVVTALADDLNTVAA 366 Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424 IQALH LA++++ + L F ASA +LG+ + L++ + I+ V+ERL LLK K Sbjct: 367 IQALHALAQKASADSRHLGTFAASAALLGVVPKEVELDEAVVHEIDGRVRERLELLKAKN 426 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462 >gi|86357063|ref|YP_468955.1| cysteinyl-tRNA synthetase [Rhizobium etli CFN 42] gi|109894928|sp|Q2KAA8|SYC_RHIEC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86281165|gb|ABC90228.1| cysteinyl-tRNA synthetase protein [Rhizobium etli CFN 42] Length = 458 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 267/459 (58%), Positives = 340/459 (74%), Gaps = 5/459 (1%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+YNTL R+ + F+ ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 4 TPELKLYNTLTREKSAFKPIDAENVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 GE VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P+ Sbjct: 64 GEDHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPSV 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PRAT++I +MI +I+ +I +GHAY A E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 124 EPRATDNIAEMIQIIEKLIGNGHAYVAAGEVLFDTKSMADYGELSKRPLDEQQAGARVAV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HKKNP DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLI Sbjct: 184 DAHKKNPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLI 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR Sbjct: 244 FPHHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRK 303 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNT 361 WP V+RLAMLMTHYREPIDF+++RL EAE LL+KWP D +VL+AL +DLNT Sbjct: 304 WPGEVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPTAEAGDAAPDESVLNALADDLNT 363 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 V+A+QALH LA+ +F ASA +LG+ K +++ + A++ LV RL +LK Sbjct: 364 VAAVQALHALAQPGND-----AVFAASAVLLGVLPKKVEIDEAFAAAVDALVAMRLEVLK 418 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F AD IR +L +KG L+D K+P+ G+R+T W+ K Sbjct: 419 AKNFVEADRIRDELGAKGIQLKDGKDPETGERVTTWEVK 457 >gi|15888416|ref|NP_354097.1| cysteinyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] gi|24418698|sp|Q8UGG4|SYC_AGRT5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15156102|gb|AAK86882.1| cysteinyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] Length = 461 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 276/460 (60%), Positives = 342/460 (74%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++K++NTL R+ +EF ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Sbjct: 1 MSLRLKLHNTLTREKSEFAPIDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE VTY RNITD+DDKI RA +++P +P+NDAI +T K QF D L CL PT Sbjct: 61 YGEDHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKKTADQFHDDVAALGCLQPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT++I +MIYLI+ +I GHAY+A E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 121 VEPRATDYIAEMIYLIERLIERGHAYKAGGEVLFDTRSMADYGQLSKRPLDEQQAGARVA 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + HKKNP DF+LWK S+ EPGWESPWG GRPGWHIECSAM+ YLG+VFDIHGGGLDL Sbjct: 181 VEAHKKNPGDFVLWKLSSESEPGWESPWGLGRPGWHIECSAMAGRYLGEVFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA AN+W+HNGF+ +EGRKMSKS GNF+TI ELL T KFGGR Sbjct: 241 IFPHHENEIAQSRCAHGTHVMANVWMHNGFVQVEGRKMSKSEGNFVTIYELLHTDKFGGR 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 WP V+RLAMLMTHYREPIDF+V+RL EAE LLSKWP TS D VL AL +DLN Sbjct: 301 QWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLLSKWPAAETSDAAADETVLEALADDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TV+A+QALH LA + + LP F ASA +LG+ K +++ I A++ LV+ RL +L Sbjct: 361 TVAAVQALHALAHAANTDPSRLPAFAASAALLGVLPKKTEMDEAIVSAVDALVELRLEML 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K K F+ AD +R +L KG L+D K+ + G+R T W+ K Sbjct: 421 KAKNFAEADRLRDELSEKGIQLKDGKDKETGERTTTWELK 460 >gi|118588096|ref|ZP_01545506.1| cysteinyl-tRNA synthetase [Stappia aggregata IAM 12614] gi|118439718|gb|EAV46349.1| cysteinyl-tRNA synthetase [Stappia aggregata IAM 12614] Length = 471 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 261/458 (56%), Positives = 332/458 (72%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+ NTL R+ +F+AID N+R+YVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 13 KGLKLTNTLTRQKEDFRAIDDGNVRLYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY RNITD+DDKI RA ++ P +P+N+AI+ +T K QF KD L L P+ + Sbjct: 73 ADHVTYARNITDVDDKINARALRDFPDLPLNEAIARVTQKTADQFHKDIRSLGVLEPSIE 132 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI M+ +I +I GHAY+A E++FDT S+P+YG S+RK+DEQ G R+ Sbjct: 133 PRATQHIGGMVEMIAALIEKGHAYQAGGEVLFDTQSMPDYGGLSKRKLDEQLAGARIAVD 192 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECS MS+ +LG+VFDIHGGGLDLIF Sbjct: 193 AHKKNPGDFVLWKLSSDEEPGWDSPWGRGRPGWHIECSVMSAQHLGEVFDIHGGGLDLIF 252 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + AN W+HNGFL +EGRKMSKS GNF TI ELLET FGGR W Sbjct: 253 PHHENEIAQSRCAHGTKVMANYWMHNGFLQVEGRKMSKSEGNFFTIQELLETDSFGGRKW 312 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 P V+RLAMLMT+YREPIDF+ ++L EAE LL++WP + VL AL +DLNT Sbjct: 313 PGEVLRLAMLMTNYREPIDFSKRKLEEAENLLARWPDPVETDAAPAAEVLDALLDDLNTA 372 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422 AIQALH LA E++K+ L +++ASA +LG+ K L+ AI+ +++RL L Sbjct: 373 GAIQALHALAVEASKDPAKLTVYSASAALLGVHPVKADLSGVDEAAIQAAIEKRLEALNA 432 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ AD IR L S+G +L+D K+ + G R+T W+ K Sbjct: 433 KNWAEADAIRDDLTSQGILLKDSKDSETGARVTTWEVK 470 >gi|325292453|ref|YP_004278317.1| Cysteinyl-tRNA synthetase [Agrobacterium sp. H13-3] gi|325060306|gb|ADY63997.1| Cysteinyl-tRNA synthetase [Agrobacterium sp. H13-3] Length = 461 Score = 626 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 275/460 (59%), Positives = 342/460 (74%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++K++NTL R+ TEF ID N+RMYVCGPTVYDFAHIGNARP+IVFDVLYRLLR+ Sbjct: 1 MSLRLKLHNTLTREKTEFAPIDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLYRLLRHV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YGE VTY RNITD+DDKI RA +++P +P+NDAI +T K QF +D L CL PT Sbjct: 61 YGESHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKKTADQFHEDVAALGCLQPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT++I +MI +I+ +I GHAY A E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 121 VEPRATDYIAEMIDIIEKLIARGHAYAAGGEVLFDTRSMADYGQLSKRPLDEQQAGARVA 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + HKK P DF+LWK S+ EPGWESPWGRGRPGWHIECSAM+ YLG+VFDIHGGGLDL Sbjct: 181 VEAHKKTPGDFVLWKLSSDNEPGWESPWGRGRPGWHIECSAMAGRYLGEVFDIHGGGLDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA + AN+W+HNGF+ +EGRKMSKS GNF+TI ELL T+KFGGR Sbjct: 241 IFPHHENEIAQSRCAHGTQVMANVWMHNGFVQVEGRKMSKSEGNFVTIYELLHTEKFGGR 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360 WP V+RLAMLMTHYREPIDF+V+RL EAE LL+KWP S D VL AL +DLN Sbjct: 301 QWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLLAKWPAAEASDAAPDETVLDALADDLN 360 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 TV+A+QALH LA + + LP F ASA +LG+ K +++ I A++ LVQ RL +L Sbjct: 361 TVAAVQALHALAHAANTDPARLPAFAASAALLGVLPKKAEVDEAIVSAVDALVQLRLEML 420 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K K F+ AD +R +L KG L+D K+ + G+R T W+ K Sbjct: 421 KAKNFAEADRLRDELSEKGIQLKDGKDKETGERTTTWELK 460 >gi|254504528|ref|ZP_05116679.1| cysteinyl-tRNA synthetase [Labrenzia alexandrii DFL-11] gi|222440599|gb|EEE47278.1| cysteinyl-tRNA synthetase [Labrenzia alexandrii DFL-11] Length = 475 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 268/462 (58%), Positives = 335/462 (72%), Gaps = 4/462 (0%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+ NTL R+ +F AID SN+R+YVCGPTVYDFAHIGNARP IVFDVLYRLLR+ YG Sbjct: 13 KGLKLTNTLTRQKEDFCAIDDSNVRLYVCGPTVYDFAHIGNARPAIVFDVLYRLLRHLYG 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA +++P +P+N+AI+++T K Q+ KD L CL PT Q Sbjct: 73 AEHVTYARNITDVDDKINARALRDYPDMPLNEAIALVTKKTADQYQKDVAALGCLEPTVQ 132 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN----NEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PRAT HI M+ +I+ +I GHAY A E++FDT S+PNYG S+RK+DEQ G R Sbjct: 133 PRATEHIDGMVKMIEQLIEKGHAYVAETPEGGEVLFDTVSMPNYGGLSKRKLDEQIAGAR 192 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + HKKNP DF+LWK S+P EPGW+SPWGRGRPGWHIECS MS H+LGKVFDIHGGGL Sbjct: 193 IAVDSHKKNPGDFVLWKLSSPEEPGWDSPWGRGRPGWHIECSVMSEHHLGKVFDIHGGGL 252 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQSCCA+ + +N W+HNGF+ +EGRKMSKS GNF TI+ELLET+ FG Sbjct: 253 DLIFPHHENEIAQSCCANGTKTMSNYWVHNGFVQVEGRKMSKSEGNFFTIHELLETENFG 312 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYND 358 GR WP V+RLAMLMTHY+EPIDF+V++L EAE LL KWP + VL A+ +D Sbjct: 313 GRKWPGEVLRLAMLMTHYKEPIDFSVRKLEEAENLLGKWPDLVETDAAPAADVLDAMNDD 372 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLI 418 LNT +AIQALH LA E+ K+ L F+ASA +LG++ ++ AI + RL Sbjct: 373 LNTAAAIQALHGLAGEANKDPHKLAEFSASAALLGLKPVAADMSGIDETAIATAITARLE 432 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 L K ++ AD IR +L S+G L+D K+ + G R+T W K Sbjct: 433 ALNGKNWAEADRIRDELASQGIALKDSKDSETGARVTTWDLK 474 >gi|116251309|ref|YP_767147.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] gi|123384854|sp|Q1MJ22|SYC_RHIL3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115255957|emb|CAK07038.1| putative cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] Length = 463 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 270/459 (58%), Positives = 344/459 (74%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLRY Y Sbjct: 4 TPELKLYNTLTREKSVFSPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRYVY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 GE VTY RNITD+DDKI RA ++HP +P+NDAI +T K QF D L CL P Sbjct: 64 GEDHVTYARNITDVDDKINARALRDHPGLPLNDAIRAVTEKTETQFHADVAELGCLEPNF 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PRAT++I +M +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 124 EPRATDNIVEMTEIIEKLIGNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARIAV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HKKNP DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLI Sbjct: 184 DAHKKNPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGDVFDIHGGGLDLI 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNF+TI+ELL+T+ FGGR Sbjct: 244 FPHHENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFVTIHELLQTETFGGRK 303 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNT 361 WP V+RLAMLMTHYREPIDF+++RL EAE LL+KWP S D +VL+AL +DLNT Sbjct: 304 WPGQVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPAAEASDAAPDESVLNALSDDLNT 363 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 V+A+QALH LA+ + + +F A+A +LG+ K +++ ++ A++ LV RL +LK Sbjct: 364 VAAVQALHALAQAAHGDPTARAVFAATADLLGLLPKKMEIDEAVASAVDALVAMRLEMLK 423 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 424 AKNFTEADKIRDELTAKGIQLKDGKDAVTGERVTTWEVK 462 >gi|241203922|ref|YP_002975018.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857812|gb|ACS55479.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 463 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 267/459 (58%), Positives = 343/459 (74%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 4 TPELKLYNTLTREKSVFSPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 GE VTY RNITD+DDKI RA ++HP +P+NDAI +T K QF D L CL P+ Sbjct: 64 GEDHVTYARNITDVDDKINARALRDHPGLPLNDAIRAVTEKTETQFHTDVAELGCLEPSF 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PRAT++I +M +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 124 EPRATDNIVEMTEIIEKLIGNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARIAV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HKK+P DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLI Sbjct: 184 DAHKKHPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGNVFDIHGGGLDLI 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNF+TI+ELL T+ FGGR Sbjct: 244 FPHHENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFVTIHELLHTETFGGRK 303 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNT 361 WP V+RLAMLMTHYREPIDF+++RL EAE LL+KWP D +VL+AL +DLNT Sbjct: 304 WPGQVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPAAEVGDAAPDESVLNALSDDLNT 363 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 V+A+QALH LA+ + + +F A+A +LG+ K +++ ++ A++ LV RL +LK Sbjct: 364 VAAVQALHALAQAAHTDPTASAVFAATADLLGLLPKKMEIDEAVASAVDALVAMRLEMLK 423 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 424 AKNFTEADKIRDELTAKGIQLKDGKDAVTGERVTTWEVK 462 >gi|227821436|ref|YP_002825406.1| cysteinyl-tRNA synthetase [Sinorhizobium fredii NGR234] gi|227340435|gb|ACP24653.1| cysteinyl-tRNA synthetase [Sinorhizobium fredii NGR234] Length = 463 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 270/458 (58%), Positives = 344/458 (75%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG Sbjct: 2 PTLKLYNTLTREKADFRPIDPLNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTY RNITD+DDKI RA +++P +P+N+AI +T K QF+ D T L CL PT Q Sbjct: 62 ESRVTYARNITDVDDKINARALRDYPGLPLNEAIRRVTEKTETQFLDDATVLGCLEPTVQ 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT I +M+ +I+ ++ GHAY+A E++FDT S+ +YG SRR +DEQ+ G RV + Sbjct: 122 PRATESIAEMVEIIEKLLAKGHAYQAEGEVLFDTKSMRDYGQLSRRNLDEQQAGARVAVE 181 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HKKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIF Sbjct: 182 AHKKNPGDFVLWKLSQEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGLDLIF 241 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + AN+W+HNGFL +EGRKMSKS GNF+TI ELL T+KFGGR W Sbjct: 242 PHHENEIAQSRCAHGTDVMANVWMHNGFLQVEGRKMSKSEGNFVTIYELLHTEKFGGRQW 301 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 P V+RLAMLMTHYREPIDF+++RL EAE LLS+WP + G D A+++AL +DLNTV Sbjct: 302 PGEVLRLAMLMTHYREPIDFSIKRLEEAEHLLSRWPVPGEAAGEADAAIVAALADDLNTV 361 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422 +AIQALH LA++++ + L F ASA +LG+ + L+ + I+ V+ RL LLK Sbjct: 362 AAIQALHALAQKASVDAQYLGAFAASAALLGVLPKEIELDVAVVEEIDGRVRARLELLKA 421 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ AD IR L ++G L+D K+P+ G+R+T W+ K Sbjct: 422 KNYAEADAIRADLLARGIQLKDGKDPETGERVTTWEVK 459 >gi|309972789|gb|ADO95990.1| Cysteinyl-tRNA synthetase [Haemophilus influenzae R2846] Length = 459 Score = 609 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWPSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVVFGGENFAETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAVRLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SNDDEVAKIEALIKQRNEARAAKDWATADAARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|325578800|ref|ZP_08148847.1| cysteine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159624|gb|EGC71756.1| cysteine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] Length = 482 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 184/483 (38%), Positives = 262/483 (54%), Gaps = 46/483 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +KI+NTL R+ F+ I + MYVCG TVYD HIG+ R + FDV+ R LR Sbjct: 22 KNMLKIFNTLTREKEVFKPIHEGKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLG 81 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + +TYVRNITD+DDKII+RA + + + + Q+ KD L L P Sbjct: 82 YD--LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDF 133 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT+HIP++I +++ +I GHAY AN +++FD S YG SR+ +D+ + G R+ Sbjct: 134 EPRATHHIPEIIEIVEKLIARGHAYVANNGDVMFDVESFKEYGKLSRQDLDQLQAGARIE 193 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 194 INEIKKNPMDFVLWKMSKENEPSWPSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDL 253 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA + N WIH+G + ++ KMSKS NF TI ++L Sbjct: 254 MFPHHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLSNFFTIRDVLN------- 305 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAV 351 + A +R +L HYR ++++ + L A+ L + A Sbjct: 306 HYNAEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVEAF 365 Query: 352 LSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVC 397 A+ +D NT +A+ L ++ARE K + L A ILG+ + Sbjct: 366 REAMDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLCELAGILGLLQQDPEKFL 425 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + + IE L+++R K +++AD R +L + G +LED G T W Sbjct: 426 QAGSDDDEVAKIEALIKQRNEARAAKDWTAADAARNELTAMGIVLED------GPNGTTW 479 Query: 458 KQK 460 +++ Sbjct: 480 RKQ 482 >gi|229846997|ref|ZP_04467103.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 7P49H1] gi|229810081|gb|EEP45801.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 7P49H1] Length = 459 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVVFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKAEDVEKANGLAARLRELGAILGLLQQEPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SNDDEVAKIEALIKQRNEARAAKDWATADAARNELTAMGIVLED------GANGTTWRKQ 459 >gi|319775019|ref|YP_004137507.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3047] gi|329123076|ref|ZP_08251646.1| cysteine--tRNA ligase [Haemophilus aegyptius ATCC 11116] gi|317449610|emb|CBY85816.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3047] gi|327471631|gb|EGF17073.1| cysteine--tRNA ligase [Haemophilus aegyptius ATCC 11116] Length = 459 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G+R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGSRIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVVFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWATADAARNELTAMGIVLED------GANGTTWRKQ 459 >gi|68248628|ref|YP_247740.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 86-028NP] gi|319896490|ref|YP_004134683.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3031] gi|81336945|sp|Q4QPG7|SYC_HAEI8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68056827|gb|AAX87080.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 86-028NP] gi|317431992|emb|CBY80340.1| cysteinyl-tRNA synthetase [Haemophilus influenzae F3031] Length = 459 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVVFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWATADAARNELIAMGIVLED------GPNGTTWRKQ 459 >gi|37679546|ref|NP_934155.1| cysteinyl-tRNA synthetase [Vibrio vulnificus YJ016] gi|37198290|dbj|BAC94126.1| cysteinyl-tRNA synthetase [Vibrio vulnificus YJ016] Length = 509 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 179/485 (36%), Positives = 256/485 (52%), Gaps = 47/485 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 ++ +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 47 IEIMLKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYL 106 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + +T+VRNITDIDDKII+RA + + +T + + D L P Sbjct: 107 GYD--LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFDALNMKRPD 158 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +PRAT +I ++I L++ +I G AY A+ +++F+ + YG S++ +D+ + G RV Sbjct: 159 VEPRATQYIQEIIELVERLIERGFAYVADNGDVMFEVNKFDEYGKLSKQDLDQLQAGARV 218 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K+ P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG D Sbjct: 219 DVETAKRCPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSD 278 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 279 LQFPHHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG------ 331 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPA 350 + A +R ++ HYR ++++ + L +A L + Sbjct: 332 -HYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDFSAAPAGGEEYVSR 390 Query: 351 VLSALYNDLNTVSAIQALHKLAREST--KNHDLL------PIFNASAHILGIEVCKEHL- 401 +A+ +D NT A L +ARE K DL + A ++GI Sbjct: 391 FTAAMNDDFNTPEAYSVLFDMAREINRLKTEDLANASALGALMRELADVIGILHQDPEAF 450 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 N + IE L++ R K +++AD R +L G +LED G T Sbjct: 451 LKGDAGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPDGT 504 Query: 456 RWKQK 460 W++K Sbjct: 505 TWRRK 509 >gi|319784480|ref|YP_004143956.1| cysteinyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170368|gb|ADV13906.1| cysteinyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 478 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 258/476 (54%), Positives = 326/476 (68%), Gaps = 20/476 (4%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +++YNTL R +F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 5 SQGLRLYNTLTRTKEDFVPIDPLNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLY 64 Query: 62 GEKCVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLA 115 G+ VTYVRNITD+DDKI RA ++ +N+AI +T K QF D L Sbjct: 65 GQTHVTYVRNITDVDDKINARALRDFGGEIASGTLSLNEAIRRVTEKTADQFHSDVAVLG 124 Query: 116 CLAPTHQPRATNHIP-------QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR 168 CL PT +PRAT + MI LIQ++I GHAY A E++FDT+S+P+YG S+R Sbjct: 125 CLEPTVEPRATEFVEPRADGKVDMITLIQSLIERGHAYVAAGEVLFDTASMPDYGQLSKR 184 Query: 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 +DEQ+ G RV HKKNP DF+LWK S+P EPGW SPWGRGRPGWHIECSAMS+ YLG Sbjct: 185 NLDEQQAGARVAVDAHKKNPGDFVLWKLSSPEEPGWNSPWGRGRPGWHIECSAMSAAYLG 244 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 +VFDIHGGGLDLIFPHHENEIAQS CA E ANIW+HNGFL +EG+KMSKS GNF +I Sbjct: 245 EVFDIHGGGLDLIFPHHENEIAQSRCAHGTEMMANIWMHNGFLQVEGQKMSKSLGNFYSI 304 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSK 344 NELLET+ FGGR WP V+RLAMLMTHYREPIDF+V++L EAE L KW + T+ Sbjct: 305 NELLETETFGGRKWPGEVLRLAMLMTHYREPIDFSVRKLEEAENTLRKWKRGADLAPTAA 364 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404 G + ++ AL +DL T +A Q L +LA E+ +D AS LG +V +++ Sbjct: 365 GQVPVEIIDALSDDLATYAAFQVLTQLAGEAMDGNDAAASLKASLLFLGFDVASAKVDEG 424 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + K + +RL + K ++ AD IR L ++G L+D K+P G+R+T W+ K Sbjct: 425 ---HVGKAIAKRLAFIAAKSWAEADRIRDDLLAQGIQLKDGKDPVTGERITTWEVK 477 >gi|15602810|ref|NP_245882.1| cysteinyl-tRNA synthetase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431884|sp|P57890|SYC_PASMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|12721267|gb|AAK03029.1| CysS [Pasteurella multocida subsp. multocida str. Pm70] Length = 459 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 188/480 (39%), Positives = 260/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD H+G+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLTREKEIFKPIHANKVGMYVCGITVYDLCHVGHGRTFVCFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + N+ + + K + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRA------LENNETCNQLVEKMIAEMHKDFDALNVLRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +I+ +I HAY AN +++FD S YG SR+ +++ + G RV Sbjct: 114 ATHHIPEIIAMIEKLIARQHAYVSANGDVMFDVESFKEYGKLSRQNLEQLQAGARVEIVN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL FP Sbjct: 174 VKKNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNHKELGEHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N WIH+G + ++ KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSCCAHSGR-YVNYWIHSGMIMVDREKMSKSLGNFFTLREVLSL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLSA 354 A +R +L HYR ++++ + L A L + A A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLNLAHSALERLYTALRGTDPTAVATEGQNYLAAFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT AI L ++ARE K + L A ILG+ + + Sbjct: 346 MDDDFNTPKAISVLFEIAREINKLKNEDILKANALAARLRELAGILGLLYQDPEQFLQSG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K ++SAD R +L G +LED N T W+++ Sbjct: 406 SDNDEVALIEALIKQRNDARAAKDWASADAARNKLAEMGVVLEDNVN------GTTWRKQ 459 >gi|145639628|ref|ZP_01795231.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittII] gi|145642163|ref|ZP_01797732.1| cysteinyl-tRNA synthetase [Haemophilus influenzae R3021] gi|145271185|gb|EDK11099.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittII] gi|145273154|gb|EDK13031.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 22.4-21] gi|309750601|gb|ADO80585.1| Cysteinyl-tRNA synthetase [Haemophilus influenzae R2866] Length = 459 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 260/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGADQSAVVFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+++R K + +AD R +L + G +LED G T W+++ Sbjct: 406 SNDDEVAKIEALIKQRNEARAAKDWPAADAARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|323494384|ref|ZP_08099494.1| cysteinyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] gi|323311367|gb|EGA64521.1| cysteinyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] Length = 460 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 180/481 (37%), Positives = 257/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I+ + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPINAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIIELVEKLIERGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 + +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 SETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLTTPAAGGEEYVSRFTEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLP------IFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K D+ + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRIKAEDIAAASALGSLMRELADVIGILYQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRASKDWANADLARDKLNEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|312885230|ref|ZP_07744908.1| cysteinyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367089|gb|EFP94663.1| cysteinyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 459 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 263/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I+ I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPINAGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII RA + N++ +T + + +D L P +P+ Sbjct: 61 -LTFVRNITDIDDKIITRANEN------NESCEALTERLIGEMHRDFDALNMKRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATEYIQEIIQLVEKLIERGFAYVADNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 + +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 SETVRYFLMSGHYRSQLNYSEENLNQARAGLERLYTSLRGLDLTVPAADGEEYVSRFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRVKATDNEHASALGSLLRELADVIGILHQDPEAFLQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +K+ IE L++ R K +++AD R +L + G +LED G T W++K Sbjct: 406 DDKDQVAEIEALIKLRNDSRAAKDWATADVARDKLTAMGIVLED------GPSGTTWRRK 459 >gi|188026279|ref|ZP_02961521.2| hypothetical protein PROSTU_03559 [Providencia stuartii ATCC 25827] gi|188022312|gb|EDU60352.1| hypothetical protein PROSTU_03559 [Providencia stuartii ATCC 25827] Length = 494 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 181/485 (37%), Positives = 258/485 (53%), Gaps = 49/485 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++I+NTL R+ EF+ I P I MYVCG T+YD HIG+ R + FD + R LRY Sbjct: 32 QMLQIFNTLSRQKEEFKPIHPGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGY 91 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + + YVRN+TDIDDKII+RA + N+ + +T++ + KD L L P + Sbjct: 92 D--LNYVRNVTDIDDKIIKRAAEN------NETVDSLTTRMLAEMHKDFDALNILRPDSE 143 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I + +I GHAY A+ +++F+ + NYG SR+ +++ + G RV Sbjct: 144 PRATQHIDEIIEITDLLIKRGHAYVADNGDVMFEVKTDKNYGQLSRQDLEQLQAGARVEV 203 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 204 ADSKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKALGNHFDIHGGGSDLM 263 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE Sbjct: 264 FPHHENEIAQSSCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLE-------Y 315 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + +R +L HYR +++T + L +A L + I Sbjct: 316 YDPETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDKSVAPAGGEIFKKRFE 375 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL--- 401 A+ +D NT A L +ARE + ++L A +LG+ Sbjct: 376 DAMNDDFNTPEAYSVLFDMAREINRLKSENKVAANELASELRKLAGVLGLLEQDPEAFLQ 435 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 IE L+++R K K+++ AD R +L + G +LED G + T Sbjct: 436 GNAQGEGDEEVAKIEALIKQRNNARKNKEWALADAARDELTAMGIVLED------GAQGT 489 Query: 456 RWKQK 460 W++K Sbjct: 490 TWRRK 494 >gi|157374677|ref|YP_001473277.1| cysteinyl-tRNA synthetase [Shewanella sediminis HAW-EB3] gi|187631638|sp|A8FTH6|SYC_SHESH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157317051|gb|ABV36149.1| Cysteine--tRNA ligase [Shewanella sediminis HAW-EB3] Length = 459 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RNITD+DDKII+RA + ++ +T + + +D L P +PR Sbjct: 61 -VNFLRNITDVDDKIIKRANENK------ESCESLTERLIGEMHRDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I HAY + N +++F SS P YG S + +D+ + G RV + Sbjct: 114 ATLHIPEIIDMVEKLIEKEHAYVSGNGDVLFSVSSFPEYGRLSGQNLDQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSCCAHNT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLE-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A+ L + + + S A Sbjct: 286 AATVRYFLLSGHYRSQLNYSEDNLKQAKSALERLYTSLKGLDLSVEAASADEYVAKFKVA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L ++ RE K L A +LGI K Sbjct: 346 MDDDFNTPEAYSVLFEMVREINRLKEADNAKASSLGVKLKELADVLGILDQDVDTFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 GSTDEVAEIEALIAERNRARAEKDWPAADVARDGLNALGVILED------GPEGTTWRKK 459 >gi|204930486|ref|ZP_03221416.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320420|gb|EDZ05623.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 461 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWTAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|148827229|ref|YP_001291982.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittGG] gi|187629826|sp|A5UFP3|SYC_HAEIG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148718471|gb|ABQ99598.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittGG] Length = 459 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 259/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWSSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGADQSAVVFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K + AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEVLIKQRNEARAAKDWPVADAARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|138893764|ref|YP_001124217.1| cysteinyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2] gi|196251125|ref|ZP_03149804.1| cysteinyl-tRNA synthetase [Geobacillus sp. G11MC16] gi|166200148|sp|A4IJG8|SYC_GEOTN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|134265277|gb|ABO65472.1| Cysteine-tRNA ligase [Geobacillus thermodenitrificans NG80-2] gi|196209366|gb|EDY04146.1| cysteinyl-tRNA synthetase [Geobacillus sp. G11MC16] Length = 467 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 177/489 (36%), Positives = 258/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + Sbjct: 2 SSIRLYNTLTRKKETFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV N TD+DDK+I AR+ + +++ I + + + +D L C Sbjct: 62 D--VTYVSNFTDVDDKLIRAARE------LGESVPAIAERFIEAYFEDIEALGCKKADIH 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +I +I IQ +I G+AYE + ++ + T YG S + IDE + G R+ Sbjct: 114 PRVTENIETIIEFIQALIDKGYAYEVDGDVYYRTRKFDGYGKLSHQSIDELQAGARIEVG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 174 EKKDDPLDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 234 PHHENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------RQI 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------------------- 343 V+R ML HYR PI+++ + L A L + + Sbjct: 286 DPQVLRFFMLSVHYRHPINYSEELLESARRGLERLRTAYGNLQHRLGASTNLTDNDGEWL 345 Query: 344 --KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 I + + + +D NT + I L +LA+++ H L F Sbjct: 346 SRLADIRASFIREMDDDFNTANGIAVLFELAKQANLYLQEKTTSENVIHAFLREFEQLMD 405 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + +E L + IE L+++R K + F+ AD IR +L++K ILED Sbjct: 406 VLGLTLKQEEL---LDEEIEALIRQRNEARKNRDFALADRIRDELKAKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|222085422|ref|YP_002543952.1| cysteinyl-tRNA synthetase protein [Agrobacterium radiobacter K84] gi|254765171|sp|B9JCA5|SYC_AGRRK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221722870|gb|ACM26026.1| cysteinyl-tRNA synthetase protein [Agrobacterium radiobacter K84] Length = 463 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 274/459 (59%), Positives = 343/459 (74%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++K+YNTL R+ +FQ ID N+R+YVCGPTVYDFAHIGNARP IVFDVL+RLLR Y Sbjct: 4 EPQLKLYNTLTREKVDFQPIDRENVRLYVCGPTVYDFAHIGNARPAIVFDVLFRLLRQVY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 GE VTY RNITD+DDKI RA ++HP +P+N+AI ++T K Q+ +DTT L CL PT Sbjct: 64 GENHVTYARNITDVDDKINARALRDHPGLPLNEAIRLVTEKTETQYYQDTTALGCLEPTV 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPRAT++I QMI +I+ +I GHAY+A E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 124 QPRATDNIAQMIEIIEKLIARGHAYQAAGEVLFDTKSMADYGQLSKRNLDEQQAGARIAV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HKK+P DF+LWK S EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLI Sbjct: 184 DAHKKSPGDFVLWKLSAENEPGWESPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGLDLI 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA + AN+W+HNGFL +EGRKMSKS GNF+TI ELL+T+K GGR+ Sbjct: 244 FPHHENEIAQSRCAHGTDVMANVWMHNGFLQVEGRKMSKSEGNFVTIYELLQTEKLGGRT 303 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNT 361 WP V+RLAMLMTHYREPIDF+V+RL EAE LL+KWP D VL AL +DLNT Sbjct: 304 WPGAVLRLAMLMTHYREPIDFSVKRLEEAERLLAKWPAADIGNAKPDATVLVALADDLNT 363 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 V AIQALH LA+ + + +LP+F ASA +LG+ K ++ ++ I+ V+ RL LLK Sbjct: 364 VVAIQALHALAQAANADASILPVFAASAALLGLLPEKVEMDDAVASEIDARVRARLELLK 423 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F+ AD IR L ++G L+D K+P G+R+T W+ K Sbjct: 424 AKNFAEADKIRDTLLAEGIQLKDGKDPATGERITTWEVK 462 >gi|54297226|ref|YP_123595.1| cysteinyl-tRNA synthetase [Legionella pneumophila str. Paris] gi|61216143|sp|Q5X5P9|SYC_LEGPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53751011|emb|CAH12422.1| cysteine tRNA synthetase [Legionella pneumophila str. Paris] Length = 456 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 191/474 (40%), Positives = 260/474 (54%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLRPGKIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASER------GVSIDELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G+AY ++ ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGNAYVSDNGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L + Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVL-------KEHH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPAVLS 353 VIR +L +HYR P++++ + L A+ L + Q Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEYWQEQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLQARAERNWAKADQIRADLLSKGIELED------GATGTTWRR 453 >gi|307256969|ref|ZP_07538746.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864544|gb|EFM96450.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 459 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVCLKELAAVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|307250157|ref|ZP_07532117.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857822|gb|EFM89918.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 459 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L + P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNIIRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEGMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|237808667|ref|YP_002893107.1| cysteinyl-tRNA synthetase [Tolumonas auensis DSM 9187] gi|259511845|sp|C4LG04|SYC_TOLAT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|237500928|gb|ACQ93521.1| cysteinyl-tRNA synthetase [Tolumonas auensis DSM 9187] Length = 463 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 180/483 (37%), Positives = 257/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVVRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKII+RA + ++ +T + D L P +PR Sbjct: 61 -VTFVRNITDVDDKIIKRAAENA------ESCDALTERLIGDMHADFDALKLQRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+Q+++ +AY A+ +++F S P YG S + I++ + G RV + Sbjct: 114 ATQHIGEIITLVQSLLDQNYAYVADSGDVLFSIDSFPEYGRLSGQNIEQLQAGARVDVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 SKRNPMDFVLWKMSKPGEPMWDSPWGAGRPGWHIECSAMNSKHLGHHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHHT-PYVNTWMHSGMVMVDEEKMSKSLGNFFTIRDVL-------KVYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVLS 353 A +R ++ HYR P++++ L +A L + + + D + Sbjct: 286 AETVRYFLMSGHYRSPLNYSDLNLQQARASLERLYTALRGVEDGEEQAALSAPFDERFKA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEH----- 400 A+ +D NT A L LAR+ + L +LG+ + Sbjct: 346 AMDDDFNTPEAYSVLFDLARDLNRAKQDSPADAVALAACLRRLGGVLGLLQQQPEQFLQS 405 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + IE L++ R K ++ AD R +L G +LED G + T W Sbjct: 406 GAAAETDDVAEIELLIKTRNDARASKNWALADEARNKLTEMGIVLED------GPQGTTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|46143889|ref|ZP_00133878.2| COG0215: Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208389|ref|YP_001053614.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20] gi|187629818|sp|A3N0S3|SYC_ACTP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126097181|gb|ABN74009.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 459 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|303253060|ref|ZP_07339211.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247903|ref|ZP_07529938.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648092|gb|EFL78297.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855594|gb|EFM87762.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 459 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEVAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|297528461|ref|YP_003669736.1| cysteinyl-tRNA synthetase [Geobacillus sp. C56-T3] gi|297251713|gb|ADI25159.1| cysteinyl-tRNA synthetase [Geobacillus sp. C56-T3] Length = 466 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 177/489 (36%), Positives = 260/489 (53%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR +VFD + R L + Sbjct: 2 SSIRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAVVFDTIRRYLEFRGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV N TD+DDK+I+ AR+ + +++ I + + + +D L C Sbjct: 62 D--VTYVSNFTDVDDKLIKAARE------LGESVPAIAERFIEAYFEDIQALGCKKADIH 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +I +I IQ +I G+AYE + ++ + T YG S + IDE + G R+ Sbjct: 114 PRVTENIDAIIEFIQALIDKGYAYEVDGDVYYRTRKFREYGKLSHQSIDELQAGARIEIG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 174 EKKDDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 234 PHHENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------REI 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+++ + L A L + ++ Sbjct: 286 DPQVLRFFMLSVHYRHPINYSEELLESARRGLERLKTAYSNLQHRLQASTNLTDNDEEWV 345 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 I + + + +D NT + I L +LA+++ H L F A Sbjct: 346 SRIADIRASFIREMDDDFNTANGIAVLFELAKQANLYLQEKTTSEKVIHAFLREFEQLAD 405 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + ++ L + IE L+Q+R K + F+ AD IR +L +K ILED Sbjct: 406 VLGLTLKQDEL---LDEEIEALIQKRNEARKNRDFALADRIRDELRAKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|212637933|ref|YP_002314453.1| cysteinyl-tRNA synthetase [Anoxybacillus flavithermus WK1] gi|226735044|sp|B7GJ46|SYC_ANOFW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212559413|gb|ACJ32468.1| Cysteinyl-tRNA synthetase [Anoxybacillus flavithermus WK1] Length = 465 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 259/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F ++P+ ++MYVCGPTVY++ HIGNARP IVFD + R L++ Sbjct: 1 MSIQVYNTLTRKKEPFIPLEPNKVKMYVCGPTVYNYIHIGNARPAIVFDTIRRYLQFRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I AR+ + + + I + + + +D T L C Sbjct: 61 E--VQYVSNFTDVDDKLIRAARE------LGEDVPTIAERFIEAYFEDITALGCKKADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +I +I I+ +I G+AYE + ++ + T +YG S + +DE K G R+ Sbjct: 113 PRVTENIDTIIQFIEQLIEKGYAYEVDGDVYYRTRRFSDYGKLSHQSVDELKSGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKEDPLDFALWKAAKEGEIYWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNFI +++++ + Sbjct: 233 PHHENEIAQSEALTG-KPFAKYWLHNGYINIDNEKMSKSLGNFILVHDII-------KQV 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+++ L A L + + Sbjct: 285 DPQVLRFFMLSVHYRHPINYSQPLLESARSGLERLKTAYANLKHRLESSTNLTTNDEQWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 + + + +D NT + I L +LA+++ L F Sbjct: 345 AKIEELRNEFIREMDDDFNTANGIAVLFELAKQANVYLMENHTSQQVIQAFLQQFEQLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + ++ L + IE L+Q+R+ K + F+ AD IR +L++K ILED Sbjct: 405 VLGLSLQQDEL---LDEEIEALIQQRIEARKNRDFALADRIRDELKAKNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRW++ Sbjct: 457 -PQGTRWRR 464 >gi|56418620|ref|YP_145938.1| cysteinyl-tRNA synthetase [Geobacillus kaustophilus HTA426] gi|261417586|ref|YP_003251268.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|319765244|ref|YP_004130745.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC52] gi|61216117|sp|Q5L429|SYC_GEOKA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56378462|dbj|BAD74370.1| cysteinyl-tRNA synthetase [Geobacillus kaustophilus HTA426] gi|261374043|gb|ACX76786.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|317110110|gb|ADU92602.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y412MC52] Length = 466 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 178/489 (36%), Positives = 260/489 (53%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + Sbjct: 2 SSIRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV N TD+DDK+I+ AR+ + +++ I + + + +D L C Sbjct: 62 D--VTYVSNFTDVDDKLIKAARE------LGESVPAIAERFIEAYFEDIQALGCKKADIH 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +I +I IQ +I G+AYE + ++ + T YG S + IDE + G R+ Sbjct: 114 PRVTENIDTIIEFIQALIDKGYAYEVDGDVYYRTRKFREYGKLSHQSIDELQAGARIEIG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 174 EKKDDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 234 PHHENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------REI 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+++ + L A L + ++ Sbjct: 286 DPQVLRFFMLSVHYRHPINYSEELLESARRGLERLKTAYSNLQHRLQASTNLTDNDEEWV 345 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 I + + + +D NT + I L +LA+++ H L F A Sbjct: 346 SRIADIRASFIREMDDDFNTANGIAVLFELAKQANLYLQEKTTSEKVIHAFLREFEQLAD 405 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + ++ L + IE L+Q+R K + F+ AD IR +L +K ILED Sbjct: 406 VLGLTLKQDEL---LDEEIEALIQKRNEARKNRDFALADRIRDELRAKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|16272052|ref|NP_438251.1| cysteinyl-tRNA synthetase [Haemophilus influenzae Rd KW20] gi|260580618|ref|ZP_05848445.1| cysteinyl-tRNA synthetase [Haemophilus influenzae RdAW] gi|1174501|sp|P43816|SYC_HAEIN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1573026|gb|AAC21753.1| cysteinyl-tRNA synthetase (cysS) [Haemophilus influenzae Rd KW20] gi|260092680|gb|EEW76616.1| cysteinyl-tRNA synthetase [Haemophilus influenzae RdAW] Length = 459 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 183/480 (38%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEYFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ + L A+ L + A A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVATFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQEPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+++R K +S+AD R +L + G +LED G T W+++ Sbjct: 406 SNDDEVAKIEALIKQRNEARTAKDWSAADSARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|253988481|ref|YP_003039837.1| cysteinyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779931|emb|CAQ83092.1| cysteinyl-tRNA synthetase [Photorhabdus asymbiotica] Length = 461 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 188/482 (39%), Positives = 265/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHPGIVGMYVCGITIYDLCHIGHGRTFVAFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + H ++ +TS+ + KD L L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRAAENH------ESCDDLTSRMLAEMYKDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I L +++I GHAY A+ +++F S +YG+ SR+ + + + G RV Sbjct: 114 ATRHIPEIIELTESLIKRGHAYVADNGDVMFSVESDSDYGALSRQDLSQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGKGRPGWHIECSAMNGKQLGNHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + + + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDASVSPAGGEVFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHD------LLPIFNASAHILGIEVCKEH------ 400 + +D NT A L +ARE K+ D L + A ILG+ Sbjct: 346 MNDDFNTPEAYSVLFDMAREINCLKSEDLSAANGLAAVLRKLAGILGLLEQDPEQFLHSG 405 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ IE L+++R K K ++ AD R QL G LED G + T W+ Sbjct: 406 VQVDDEDIAKIEALIKQRNDARKNKDWTLADSARDQLNEMGIELED------GPQGTSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|165976334|ref|YP_001651927.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307261399|ref|ZP_07543074.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|229558613|sp|B0BPJ8|SYC_ACTPJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|165876435|gb|ABY69483.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306869130|gb|EFN00932.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 459 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|254229902|ref|ZP_04923306.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] gi|262394608|ref|YP_003286462.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] gi|151937606|gb|EDN56460.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] gi|262338202|gb|ACY51997.1| cysteinyl-tRNA synthetase [Vibrio sp. Ex25] Length = 460 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 180/481 (37%), Positives = 255/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP++I L+Q +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIPEIIELVQKLIERGFAYVADNGDVMFEVRKFDEYGKLSKQDLDQLQAGARVDVET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTK-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLNAAPAGGEEYVSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|262404192|ref|ZP_06080747.1| cysteinyl-tRNA synthetase [Vibrio sp. RC586] gi|262349224|gb|EEY98362.1| cysteinyl-tRNA synthetase [Vibrio sp. RC586] Length = 459 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 256/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENS------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLDQLQAGARVDVEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A IR ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRTVPAAGGEEYLTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDLTNASALGSLMCELADVIGILYQEPEAFFQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEEAEQIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|307245827|ref|ZP_07527913.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254800|ref|ZP_07536627.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259241|ref|ZP_07540971.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853529|gb|EFM85748.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862326|gb|EFM94293.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866908|gb|EFM98766.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 459 Score = 602 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L + P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNIIRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|317491067|ref|ZP_07949503.1| cysteinyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920614|gb|EFV41937.1| cysteinyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 461 Score = 602 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + + +T + + KD L P +PR Sbjct: 61 -LKYVRNVTDVDDKIIKRA------LENGETCDQLTERMLAEMHKDFDSLNIARPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIPEIIEIVEQLITRGHAYVASNGDVMFAVDTDPDYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++LE + Sbjct: 234 HHENEIAQSSCAHDG-PYVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLE-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTEPQAEPAGGDVFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A AL LARE + + L A ILG+ Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKSEDMAQANALAAELRKLAKILGLLEQDPEVFLQGG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL + G +LED G + T W+ Sbjct: 406 AQADDSEVAQIEALIKQRNDARAAKDWAMADSARDQLNALGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|303251228|ref|ZP_07337406.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252540|ref|ZP_07534436.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649770|gb|EFL79948.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860132|gb|EFM92149.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 459 Score = 602 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 183/479 (38%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L + P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNIIRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|52841538|ref|YP_095337.1| cysteinyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|61216153|sp|Q5ZVY1|SYC_LEGPH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52628649|gb|AAU27390.1| cysteinyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 456 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 194/474 (40%), Positives = 263/474 (55%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLKPGTIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASER------GVSIDELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G+AY + N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L + Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVL-------KEHH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------TSKGIIDP----AVLS 353 VIR +L +HYR P++++ + L A+ L + Q T +D Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTEDSKLDEYWQVQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLQARAERNWAKADQIRADLLSKGIELED------GATGTTWRR 453 >gi|258621406|ref|ZP_05716440.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM573] gi|262171188|ref|ZP_06038866.1| cysteinyl-tRNA synthetase [Vibrio mimicus MB-451] gi|258586794|gb|EEW11509.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM573] gi|261892264|gb|EEY38250.1| cysteinyl-tRNA synthetase [Vibrio mimicus MB-451] Length = 459 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 178/480 (37%), Positives = 256/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L+Q +I G AY A+ +++F+ YG S++ +++ + G RV + Sbjct: 114 ATAYIEEIIALVQRLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLEQLQAGARVDVEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYLSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDLTNASALGSLMRELADVIGILYQEPETFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEEAEQIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|114320961|ref|YP_742644.1| cysteinyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] gi|114227355|gb|ABI57154.1| cysteinyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] Length = 485 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 181/483 (37%), Positives = 260/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+N+L ++ F+ I P ++RMYVCG TVYD+ H+G+AR ++VFD++ R LR+ Sbjct: 25 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHLGY-- 82 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII RA + + + + +T + + +D L L P H+PR Sbjct: 83 RVTFVRNITDIDDKIIRRAAE------LGEPMGAVTERFIRAMHEDAEALGVLPPDHEPR 136 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I +I+ ++ GHAY A+ ++ F SS P YG S + ++ + G RV Sbjct: 137 ATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDE 196 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGGLDL FP Sbjct: 197 GKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFP 256 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+HNG + + KM+KS GNF T+ E+L + Sbjct: 257 HHENEIAQSECATG-HPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHR------- 308 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLS 353 A +RL +L +HYR P+++++ L +A+ L + + Sbjct: 309 AEAVRLFLLSSHYRSPLNYSLDGLRQAQGALERLYLALRGLPEAPVPEADPQGFRARFHA 368 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEH---- 400 A+ +D NT A+ L +LARE + + +LG+ Sbjct: 369 AMDDDFNTPEALAVLFELAREVNRLRQGDDDAGAAAPGALLRVLGGVLGLLQDDPERFLR 428 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + I+ LV R K + F+ AD IR +L +G ILED G + T W Sbjct: 429 GGDAGGDEDAEIDALVARRTEARKNRDFAEADRIRDELAERGIILED------GPQGTTW 482 Query: 458 KQK 460 +++ Sbjct: 483 RRE 485 >gi|260768877|ref|ZP_05877811.1| cysteinyl-tRNA synthetase [Vibrio furnissii CIP 102972] gi|260616907|gb|EEX42092.1| cysteinyl-tRNA synthetase [Vibrio furnissii CIP 102972] gi|315180571|gb|ADT87485.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Vibrio furnissii NCTC 11218] Length = 460 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 181/481 (37%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENQ------ESCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L+Q +I G AY A+ +++F+ + +YG S++ +D+ + G RV Sbjct: 114 ATAYIQEIIELVQRLIDRGFAYVADNGDVMFEVNKFDDYGKLSKQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + + + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDMTVPAAGGEEYLTRFTTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTEDTDKASALGALMRELADVIGILYQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLNEMGIVLED------GPSGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|148358849|ref|YP_001250056.1| cysteinyl-tRNA synthetase [Legionella pneumophila str. Corby] gi|187629845|sp|A5IBG0|SYC_LEGPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148280622|gb|ABQ54710.1| cysteinyl-tRNA synthetase [Legionella pneumophila str. Corby] Length = 456 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 192/474 (40%), Positives = 259/474 (54%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLRPGKIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASERDV------SIDELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G AY + N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGSAYVSENGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L + Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVL-------KEHH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPAVLS 353 VIR +L +HYR P++++ + L A+ L + Q Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEYWQEQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLQARAERNWAKADQIRTDLLSKGIELED------GATGTTWRR 453 >gi|332289654|ref|YP_004420506.1| cysteinyl-tRNA synthetase [Gallibacterium anatis UMN179] gi|330432550|gb|AEC17609.1| cysteinyl-tRNA synthetase [Gallibacterium anatis UMN179] Length = 459 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 262/479 (54%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL+R+ F I P+ + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLKREKEIFTPIHPNQVGMYVCGVTVYDLCHIGHGRTFVSFDVIARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + H + + + + KD L P +PR Sbjct: 60 HLTYVRNITDVDDKIIKRALENH------ETCEHLVDRMVAEMYKDFDALNIQRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L+Q +I +GHAY A N +++FD S P YG SR+ + + + G RV Sbjct: 114 ATHHIPEIIALVQRLIDNGHAYVAQNGDVMFDVDSFPEYGKLSRQDLSQLQAGARVEIND 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWQSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHGGA-YVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R +L HYR ++++ + L A L + T+ A +A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLKLAHSALERLYTALRGTDANATAAGGEQFIEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L +ARE K A +LG+ + Sbjct: 346 MDDDFNTPGALSVLFDMARELNKLKAEQNPQTDAFAARLRELAGVLGLLYQDPETFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ + + IE L+ +R K +++AD R +L + G ++ED G T W++ Sbjct: 406 MDDDETKIIETLIAQRNQARANKDWATADAARDKLAAMGVVIED------GANGTTWRK 458 >gi|149191898|ref|ZP_01870131.1| cysteinyl-tRNA synthetase [Vibrio shilonii AK1] gi|148834246|gb|EDL51250.1| cysteinyl-tRNA synthetase [Vibrio shilonii AK1] Length = 460 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 175/481 (36%), Positives = 254/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYVGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LKFVRNITDIDDKIIKRANEN------GESCESLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATEFIAEIIELVEKLIDRGFAYVADNGDVMFEVSKFDKYGKLSKQDLDQLQAGARVDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L+ + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLD-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLSA 354 +R ++ HYR ++++ L +A L + + + +A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLNQARSALERLYTSLRGLDLDAEPTGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKTVDLGQASQLGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGDNDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|187631658|sp|Q0A7N3|SYC_ALHEH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 462 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 181/483 (37%), Positives = 260/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+N+L ++ F+ I P ++RMYVCG TVYD+ H+G+AR ++VFD++ R LR+ Sbjct: 2 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII RA + + + + +T + + +D L L P H+PR Sbjct: 60 RVTFVRNITDIDDKIIRRAAE------LGEPMGAVTERFIRAMHEDAEALGVLPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I +I+ ++ GHAY A+ ++ F SS P YG S + ++ + G RV Sbjct: 114 ATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGGLDL FP Sbjct: 174 GKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+HNG + + KM+KS GNF T+ E+L + Sbjct: 234 HHENEIAQSECATG-HPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHR------- 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLS 353 A +RL +L +HYR P+++++ L +A+ L + + Sbjct: 286 AEAVRLFLLSSHYRSPLNYSLDGLRQAQGALERLYLALRGLPEAPVPEADPQGFRARFHA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEH---- 400 A+ +D NT A+ L +LARE + + +LG+ Sbjct: 346 AMDDDFNTPEALAVLFELAREVNRLRQGDDDAGAAAPGALLRVLGGVLGLLQDDPERFLR 405 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + I+ LV R K + F+ AD IR +L +G ILED G + T W Sbjct: 406 GGDAGGDEDAEIDALVARRTEARKNRDFAEADRIRDELAERGIILED------GPQGTTW 459 Query: 458 KQK 460 +++ Sbjct: 460 RRE 462 >gi|22125011|ref|NP_668434.1| cysteinyl-tRNA synthetase [Yersinia pestis KIM 10] gi|45440695|ref|NP_992234.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] gi|21957858|gb|AAM84685.1|AE013714_1 cysteine tRNA synthetase [Yersinia pestis KIM 10] gi|45435553|gb|AAS61111.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] Length = 476 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 183/484 (37%), Positives = 258/484 (53%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 15 PMLKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY 74 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P + Sbjct: 75 --SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLE 126 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HI ++I + + +I GHAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 127 PRATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEV 186 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+ Sbjct: 187 ADVKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLM 246 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L Sbjct: 247 FPHHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------Y 298 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVL 352 + A +R ++ HYR ++++ + L +A L + T + Sbjct: 299 YDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFR 358 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL--- 401 +A+ +D NT A L +ARE + + L A +LG+ L Sbjct: 359 TAMDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQ 418 Query: 402 -----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + + IE L+++R K ++ AD R QL G +LED G + T Sbjct: 419 GGAQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNELGIVLED------GPQGTT 472 Query: 457 WKQK 460 W++K Sbjct: 473 WRRK 476 >gi|163751990|ref|ZP_02159201.1| cysteinyl-tRNA synthetase [Shewanella benthica KT99] gi|161328148|gb|EDP99315.1| cysteinyl-tRNA synthetase [Shewanella benthica KT99] Length = 459 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ + P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKIGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRAAEN------NESCKSLTERLIGEMHRDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I +AY ++ +++F SS YG S + I++ + G RV + Sbjct: 114 ATQHMPEIIDMVEKLIEKEYAYVSDNGDVLFSVSSFAEYGRLSGQNIEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVL-------KHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-IDPA--------VLSA 354 A IR +L HYR ++++ L +A+ L + + + ++PA +A Sbjct: 286 AGTIRYFLLSGHYRSQLNYSEDNLKQAKSALDRLYTSLKGLDLNVEPADASEFVVKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIE------VCKEH 400 + +D NT A L + RE K DL A +LG+ K Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRVKGSDLAQASAMGVKLKELAGVLGLLDQDVDIFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 GSDDEVAQIEALIVERNRARAEKDWPAADVARDGLNALGVILED------GPSGTTWRKK 459 >gi|127513439|ref|YP_001094636.1| cysteinyl-tRNA synthetase [Shewanella loihica PV-4] gi|187631636|sp|A3QFX9|SYC_SHELP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|126638734|gb|ABO24377.1| cysteinyl-tRNA synthetase [Shewanella loihica PV-4] Length = 459 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 256/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ I P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVAFDMIVRYLRYIGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA ++ +T + TQ+ D L P +PR Sbjct: 61 -VNFHRNITDVDDKIIKRA------TENGESCDALTERLTQEMYHDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ ++ HAY A+ +++F +S P YG S + +D+ + G RV Sbjct: 114 ATQHMPEIIEMVERLLERDHAYIADNGDVLFSVASFPEYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 NKRDPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ L +A+ L + + A A Sbjct: 286 ASTVRYFLLSGHYRSQLNYSEDNLKQAKAALERLYTALKGLDLSVEAAPASEYVAKFKEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIE------VCKEH 400 + +D NT A L +ARE K DL +LGI K Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKVDDLAAASALGVSMKQLGDVLGILEQDVDGFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K +++AD R L + G ILED G T W++K Sbjct: 406 GSDDEVAQIEALIAERNRARTEKDWAAADVARDGLNALGVILED------GPEGTTWRKK 459 >gi|238751080|ref|ZP_04612576.1| Cysteinyl-tRNA synthetase [Yersinia rohdei ATCC 43380] gi|238710770|gb|EEQ02992.1| Cysteinyl-tRNA synthetase [Yersinia rohdei ATCC 43380] Length = 473 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 187/484 (38%), Positives = 259/484 (53%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 12 PMLKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY 71 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P + Sbjct: 72 --SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLE 123 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 124 PRATHHIPEIIELTERLIAREHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEI 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+ Sbjct: 184 ADVKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLM 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE Sbjct: 244 FPHHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLE-------Y 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVL 352 + A +R ++ HYR ++++ + L +A L + + Sbjct: 296 YDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDVHAAPAGGAEFEARFR 355 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL--- 401 +A+ +D NT A L LARE + + L AH+LG+ L Sbjct: 356 AAMDDDFNTPEAYSVLFDLAREVNRLKTEDITAANGLAAELRKLAHVLGLLEQDPELFLQ 415 Query: 402 -----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + + IE L+++R K ++ AD R QL G +LED G + T Sbjct: 416 SGAQSDGDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTT 469 Query: 457 WKQK 460 W++K Sbjct: 470 WRRK 473 >gi|145636711|ref|ZP_01792377.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittHH] gi|145270009|gb|EDK09946.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittHH] Length = 459 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSL--DY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 60 DLTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWSSPWGTGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ + L A+ L + A A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVATFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQEPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +S+AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARVAKDWSAADSARNELTAMGIVLED------GANGTTWRKQ 459 >gi|170727456|ref|YP_001761482.1| cysteinyl-tRNA synthetase [Shewanella woodyi ATCC 51908] gi|229558789|sp|B1KLU0|SYC_SHEWM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169812803|gb|ACA87387.1| cysteinyl-tRNA synthetase [Shewanella woodyi ATCC 51908] Length = 459 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVAFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RNITD+DDKII+RA + ++ +T + + KD L P +PR Sbjct: 61 -VNFLRNITDVDDKIIKRAAENK------ESCDSLTERLIGEMHKDFDSLNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ ++I +++ +I HAY + N +++F SS P YG S + +++ + G RV + Sbjct: 114 ATLHMAEIIEMVEKLIEKEHAYVSSNGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 SKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHNT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-IDPA--------VLSA 354 A IR +L HYR ++++ L +A+ L++ + ++PA A Sbjct: 286 AATIRYFLLSGHYRSQLNYSEDNLKQAKSALARLYTALKDLDLTVEPAAAENFVSKFKQA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LGI K Sbjct: 346 MDDDFNTPEAYSVLFDMVREVNRLKVTDLAQASALAVRLKELAGVLGILEQDVDSFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N +E L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 SNDAEVAEVEALIAERNRARAEKDWPAADIARDGLNALGVILED------GPEGTTWRKK 459 >gi|84391753|ref|ZP_00991655.1| cysteinyl-tRNA synthetase [Vibrio splendidus 12B01] gi|84376466|gb|EAP93345.1| cysteinyl-tRNA synthetase [Vibrio splendidus 12B01] Length = 461 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LNFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +++ L++ +I G AY A N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIVELVEKLIERGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHGT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDVTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L ++ARE K L + A I+GI Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESVEKASALGALMRELADIIGILHQDPEAFLQGD 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEALIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|229523866|ref|ZP_04413271.1| cysteinyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] gi|229337447|gb|EEO02464.1| cysteinyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] Length = 459 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSRYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRAAKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|153830573|ref|ZP_01983240.1| cysteinyl-tRNA synthetase [Vibrio cholerae 623-39] gi|229520308|ref|ZP_04409734.1| cysteinyl-tRNA synthetase [Vibrio cholerae TM 11079-80] gi|229529129|ref|ZP_04418519.1| cysteinyl-tRNA synthetase [Vibrio cholerae 12129(1)] gi|254292163|ref|ZP_04962934.1| cysteinyl-tRNA synthetase [Vibrio cholerae AM-19226] gi|148873935|gb|EDL72070.1| cysteinyl-tRNA synthetase [Vibrio cholerae 623-39] gi|150421926|gb|EDN13902.1| cysteinyl-tRNA synthetase [Vibrio cholerae AM-19226] gi|229332903|gb|EEN98389.1| cysteinyl-tRNA synthetase [Vibrio cholerae 12129(1)] gi|229342674|gb|EEO07666.1| cysteinyl-tRNA synthetase [Vibrio cholerae TM 11079-80] Length = 459 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|153839789|ref|ZP_01992456.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] gi|149746697|gb|EDM57685.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] Length = 463 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 178/485 (36%), Positives = 254/485 (52%), Gaps = 47/485 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 ++ +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 1 IEIMLKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + +T+VRNITDIDDKII+RA + ++ +T + D L P Sbjct: 61 GYD--LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGDMHADFDALNMKRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +PRAT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV Sbjct: 113 VEPRATQFISEIIELVEKLIERGFAYVADNGDVMFEVGKFDEYGKLSKQDLDQLQAGARV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG D Sbjct: 173 DIETAKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSTILGDHFDIHGGGSD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 233 LQFPHHENEIAQSCCAHDTK-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG------ 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPA 350 + A +R ++ HYR ++++ L +A L + Sbjct: 286 -HYDAETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLNAAPAGGEEYVSR 344 Query: 351 VLSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL- 401 +A+ +D NT A L +ARE K +L + A ++GI Sbjct: 345 FTAAMNDDFNTPEAYSVLFDMAREVNRLKTESVEKASELGALMRELADVIGILYQDPEAF 404 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 N + IE L++ R K +++AD R +L G +LED G T Sbjct: 405 LKGNAGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGT 458 Query: 456 RWKQK 460 W++K Sbjct: 459 TWRRK 463 >gi|108808560|ref|YP_652476.1| cysteinyl-tRNA synthetase [Yersinia pestis Antiqua] gi|108811182|ref|YP_646949.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|145599972|ref|YP_001164048.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|149365066|ref|ZP_01887101.1| cysteinyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|153947472|ref|YP_001401974.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] gi|162421370|ref|YP_001605813.1| cysteinyl-tRNA synthetase [Yersinia pestis Angola] gi|165927660|ref|ZP_02223492.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|166011255|ref|ZP_02232153.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166214354|ref|ZP_02240389.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398585|ref|ZP_02304109.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422736|ref|ZP_02314489.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423331|ref|ZP_02315084.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930118|ref|YP_002347993.1| cysteinyl-tRNA synthetase [Yersinia pestis CO92] gi|229838673|ref|ZP_04458832.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896170|ref|ZP_04511340.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|229899240|ref|ZP_04514383.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229901410|ref|ZP_04516532.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|270489600|ref|ZP_06206674.1| cysteine--tRNA ligase [Yersinia pestis KIM D27] gi|294504817|ref|YP_003568879.1| cysteinyl-tRNA synthetase [Yersinia pestis Z176003] gi|21264007|sp|Q8ZCC0|SYC_YERPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123073499|sp|Q1CKY1|SYC_YERPN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123372235|sp|Q1C4U1|SYC_YERPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187470969|sp|A7FL46|SYC_YERP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187470970|sp|A4TP63|SYC_YERPP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558804|sp|A9R253|SYC_YERPG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|108774830|gb|ABG17349.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|108780473|gb|ABG14531.1| cysteinyl-tRNA synthetase [Yersinia pestis Antiqua] gi|115348729|emb|CAL21675.1| cysteinyl-tRNA synthetase [Yersinia pestis CO92] gi|145211668|gb|ABP41075.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|149291479|gb|EDM41553.1| cysteinyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|152958967|gb|ABS46428.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] gi|162354185|gb|ABX88133.1| cysteinyl-tRNA synthetase [Yersinia pestis Angola] gi|165920414|gb|EDR37691.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989933|gb|EDR42234.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204483|gb|EDR48963.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|166958327|gb|EDR55348.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051089|gb|EDR62497.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057501|gb|EDR67247.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681339|gb|EEO77433.1| cysteinyl-tRNA synthetase [Yersinia pestis Nepal516] gi|229687642|gb|EEO79715.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229695039|gb|EEO85086.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701093|gb|EEO89122.1| cysteinyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|262362880|gb|ACY59601.1| cysteinyl-tRNA synthetase [Yersinia pestis D106004] gi|262366803|gb|ACY63360.1| cysteinyl-tRNA synthetase [Yersinia pestis D182038] gi|270338104|gb|EFA48881.1| cysteine--tRNA ligase [Yersinia pestis KIM D27] gi|294355276|gb|ADE65617.1| cysteinyl-tRNA synthetase [Yersinia pestis Z176003] Length = 461 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|161501802|ref|NP_761714.2| cysteinyl-tRNA synthetase [Vibrio vulnificus CMCP6] gi|30316151|sp|Q8D8R1|SYC_VIBVU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|319999475|gb|AAO11241.2| cysteinyl-tRNA synthetase [Vibrio vulnificus CMCP6] Length = 460 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 179/481 (37%), Positives = 256/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ + YG S++ +D+ + G RV + Sbjct: 114 ATQYIQEIIELVERLIERGFAYVADNGDVMFEVNKFDEYGKLSKQDLDQLQAGARVDVET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRCPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDFSAAPAGGEEYVSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLL------PIFNASAHILGIE-------VCKE 399 + +D NT A L +ARE K DL + A ++GI + + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKTEDLANASALGALMRELADVIGILHQDPDAFLKGD 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|238790851|ref|ZP_04634606.1| Cysteinyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] gi|238721068|gb|EEQ12753.1| Cysteinyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] Length = 473 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 187/484 (38%), Positives = 259/484 (53%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 12 PMLKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY 71 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 +TYVRN+TD+DDKII+RA I N+ +TS+ + KD L P + Sbjct: 72 --SLTYVRNVTDVDDKIIKRA------IENNETCEQLTSRMLAEMHKDFDALNLERPDLE 123 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 124 PRATHHIPEIIELTERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+ Sbjct: 184 ADVKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLM 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L Sbjct: 244 FPHHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------Y 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVL 352 + A +R ++ HYR ++++ + L +A L + T + Sbjct: 296 YDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFR 355 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL--- 401 +A+ +D NT A L +ARE + + L AH+LG+ L Sbjct: 356 AAMDDDFNTPEAYSVLFDIAREVNRLKTEDIAAANGLAAELRKLAHVLGLLEQDPELFLQ 415 Query: 402 -----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + + IE L+++R K ++ AD R QL G +LED G + T Sbjct: 416 SGAQTDDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTT 469 Query: 457 WKQK 460 W++K Sbjct: 470 WRRK 473 >gi|320156698|ref|YP_004189077.1| cysteinyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] gi|56749448|sp|Q7MLR5|SYC_VIBVY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|319932010|gb|ADV86874.1| cysteinyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] Length = 460 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 179/481 (37%), Positives = 254/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GETCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ + YG S++ +D+ + G RV + Sbjct: 114 ATQYIQEIIELVERLIERGFAYVADNGDVMFEVNKFDEYGKLSKQDLDQLQAGARVDVET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRCPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDFSAAPAGGEEYVSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLL------PIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K DL + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKTEDLANASALGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLNEMGIVLED------GPDGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|190150242|ref|YP_001968767.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263581|ref|ZP_07545196.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229558612|sp|B3GXR0|SYC_ACTP7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189915373|gb|ACE61625.1| cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871224|gb|EFN02953.1| Cysteinyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 459 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 183/479 (38%), Positives = 264/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+ + + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINSNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNEMCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLNNLDLARSALERLYTSLRGCDLSVEVAGGEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAARLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTTWRK 458 >gi|114048058|ref|YP_738608.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-7] gi|123030490|sp|Q0HTK4|SYC_SHESR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|113889500|gb|ABI43551.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-7] Length = 461 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 253/482 (52%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN++ R+ EF+ I P + MYVCG TVYD HIG+ R + FD++ R LRY Sbjct: 2 PMLKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V + RNITDIDDKII+RA + + + +T + + KD L + P + Sbjct: 62 E--VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMIRPDFE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I +++ ++ GHAY A + +++F +S P YG S + +++ + G RV Sbjct: 114 PRATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL Sbjct: 174 DDNKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQ 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + +R +L HYR I+++ + L +A L + Sbjct: 286 YDPETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAPAPAEEFVAKFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L + RE + + A +LG+ K Sbjct: 346 AAMDDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAVAMKQLADVLGLLHQAPDAFFK 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+ ER K + +AD R +L G +LED G T W+ Sbjct: 406 GEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLED------GPSGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 KK 461 >gi|153000119|ref|YP_001365800.1| cysteinyl-tRNA synthetase [Shewanella baltica OS185] gi|304409708|ref|ZP_07391328.1| cysteinyl-tRNA synthetase [Shewanella baltica OS183] gi|307304064|ref|ZP_07583817.1| cysteinyl-tRNA synthetase [Shewanella baltica BA175] gi|187631634|sp|A6WLP8|SYC_SHEB8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151364737|gb|ABS07737.1| cysteinyl-tRNA synthetase [Shewanella baltica OS185] gi|304352226|gb|EFM16624.1| cysteinyl-tRNA synthetase [Shewanella baltica OS183] gi|306912962|gb|EFN43385.1| cysteinyl-tRNA synthetase [Shewanella baltica BA175] Length = 459 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 255/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + + +A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFVAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFFQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K +++AD R +L G LED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED------GPSGTTWRKK 459 >gi|260902702|ref|ZP_05911097.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AQ4037] gi|308108249|gb|EFO45789.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AQ4037] Length = 460 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 178/481 (37%), Positives = 252/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGDMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFISEIIELVEKLIERGFAYVADNGDVMFEVGKFDEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSTILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTK-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLNAAPAGGEEYVSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTESVEKASELGALMRELADVIGILYQDPEAFLKGN 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|327484400|gb|AEA78807.1| Cysteinyl-tRNA synthetase [Vibrio cholerae LMA3894-4] Length = 459 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 256/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|91226019|ref|ZP_01260946.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 12G01] gi|269968727|ref|ZP_06182720.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 40B] gi|91189460|gb|EAS75737.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 12G01] gi|269826654|gb|EEZ80995.1| cysteinyl-tRNA synthetase [Vibrio alginolyticus 40B] Length = 460 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 178/481 (37%), Positives = 253/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFNEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLNAAPAGGEEYVSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|160874741|ref|YP_001554057.1| cysteinyl-tRNA synthetase [Shewanella baltica OS195] gi|187631635|sp|A9KWH4|SYC_SHEB9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160860263|gb|ABX48797.1| cysteinyl-tRNA synthetase [Shewanella baltica OS195] gi|315266983|gb|ADT93836.1| cysteinyl-tRNA synthetase [Shewanella baltica OS678] Length = 459 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 255/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + + +A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFIAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFFQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K +++AD R +L G LED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED------GPSGTTWRKK 459 >gi|297579367|ref|ZP_06941295.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC385] gi|297536961|gb|EFH75794.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC385] Length = 459 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSRYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|294141771|ref|YP_003557749.1| cysteinyl-tRNA synthetase [Shewanella violacea DSS12] gi|293328240|dbj|BAJ02971.1| cysteinyl-tRNA synthetase [Shewanella violacea DSS12] Length = 459 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKIGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + ++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRAAENK------ESCESLTERLIGEMHRDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I HAY + N +++F SS P YG S + I++ + G RV + Sbjct: 114 ATLHMPEIIDMVEKLIEKDHAYVSGNGDVLFSVSSFPEYGRLSGQNIEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG+ FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWDSPWGAGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTS-YVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A IR +L HYR ++++ L +A+ L + + S +A Sbjct: 286 AGTIRYFLLSGHYRSQLNYSEDNLKQAKSALERLYTSLKGLDLSVESADASEFVAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIE------VCKEH 400 + +D NT A L ++ RE K D+ A +LG+ K Sbjct: 346 MDDDFNTPEAYSVLFEMVREINRVKGSDIAAASALGVKLKELAEVLGLLEQDVDTFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 GSDDEVAQIEALIVERNRARAEKDWPAADIARDGLNALGVILED------GPSGTTWRKK 459 >gi|120599417|ref|YP_963991.1| cysteinyl-tRNA synthetase [Shewanella sp. W3-18-1] gi|166225307|sp|A1RL92|SYC_SHESW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120559510|gb|ABM25437.1| cysteinyl-tRNA synthetase [Shewanella sp. W3-18-1] Length = 461 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 258/482 (53%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN++ R+ EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY Sbjct: 2 PMLKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V + RNITD+DDKII+RA + N++ +T + + +D L L P + Sbjct: 62 E--VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHRDFDALNMLRPDFE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 PRATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL Sbjct: 174 DENKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQ 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VL 352 + A +R +L HYR ++++ L +A L + + A Sbjct: 286 YDAETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFIVKFK 345 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L + R+ K L A +LG+ K Sbjct: 346 AAMDDDFNTPEAYSVLFDMVRDINRLKATDIAKASALAVAMKQLADVLGLLGQDPDAFFK 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+ ER K + +AD R +L G +LED G T W+ Sbjct: 406 GEGSDDEVAEIEALIVERNRARSEKDWPAADVARNRLNELGVVLED------GPSGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 KK 461 >gi|28897924|ref|NP_797529.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|260364387|ref|ZP_05777025.1| cysteine--tRNA ligase [Vibrio parahaemolyticus K5030] gi|260877081|ref|ZP_05889436.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|260895742|ref|ZP_05904238.1| cysteine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|31076996|sp|Q87QJ9|SYC_VIBPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28806138|dbj|BAC59413.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|308088338|gb|EFO38033.1| cysteine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|308093754|gb|EFO43449.1| cysteine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|308115166|gb|EFO52706.1| cysteine--tRNA ligase [Vibrio parahaemolyticus K5030] gi|328473118|gb|EGF43966.1| cysteinyl-tRNA synthetase [Vibrio parahaemolyticus 10329] Length = 460 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 178/481 (37%), Positives = 252/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGDMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFDEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSTILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTK-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLNAAPAGGEEYVSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTESVEKASELGALMRELADVIGILYQDPEAFLKGN 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|167624689|ref|YP_001674983.1| cysteinyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] gi|189082075|sp|B0TLV2|SYC_SHEHH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167354711|gb|ABZ77324.1| cysteinyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] Length = 459 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 255/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ +F + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + KD L P ++PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCDSLTERLIAEMHKDFDSLNMARPDNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I HAY A+ +++F SS P YG S + +++ + G RV + Sbjct: 114 ATQHIPEIIDMVERLIERDHAYVASSGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ L +A+ L + + A +A Sbjct: 286 AATVRYFLLSGHYRSQLNYSEDNLKQAKAALERIYTALKDLDLSVEAAPAQEFVAKFKTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE K L A +LGI K Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKATDMAKASALGVALKELADVLGILGQDVDTFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARAEKDWPAADVARDGLNALGVILED------GPEGTTWRKK 459 >gi|238795438|ref|ZP_04638953.1| Cysteinyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] gi|238720557|gb|EEQ12358.1| Cysteinyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] Length = 461 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I ++ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENSETCEQLTTRMLAEMHKDFDALNLQRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I + + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIEMTERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWQSPWGPGRPGWHIECSAMNSKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPKGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDITAANGLAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDNDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|125974555|ref|YP_001038465.1| cysteinyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] gi|256004086|ref|ZP_05429071.1| cysteinyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|281419079|ref|ZP_06250096.1| cysteinyl-tRNA synthetase [Clostridium thermocellum JW20] gi|187629806|sp|A3DH43|SYC_CLOTH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|125714780|gb|ABN53272.1| cysteinyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] gi|255992009|gb|EEU02106.1| cysteinyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|281407228|gb|EFB37489.1| cysteinyl-tRNA synthetase [Clostridium thermocellum JW20] gi|316941673|gb|ADU75707.1| cysteinyl-tRNA synthetase [Clostridium thermocellum DSM 1313] Length = 468 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 176/483 (36%), Positives = 255/483 (52%), Gaps = 53/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF ID ++MY CGPTVY++ HIGNARP I+FD L R L Y Sbjct: 1 MRLYNTLTRKKEEFHPIDEKEVKMYSCGPTVYNYFHIGNARPFIIFDTLRRYLEYKGYN- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA +E + + K ++ D L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKRANEE------GITVKELADKFINEYFVDAKGLGIKEATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I +I+ + G AY + ++ F YG S + +++ ++G R+ Sbjct: 113 ATENIDAIIEMIKKLEEKGFAYNVDGDVYFSARKFTEYGKLSHQSLEDLELGARIDVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP W+SPWG+GRPGWHIECSAM++ YLG+ DIH GG DL+FPH Sbjct: 173 KKDPMDFALWKAQKPGEPAWDSPWGKGRPGWHIECSAMANKYLGETIDIHSGGQDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A W+HNGF+N++G KM+KS GNF T+ ++ +++ Sbjct: 233 HENEIAQSEAANG-KPFARFWLHNGFINVDGEKMAKSKGNFFTVRDI-------AKTFDY 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------------ 346 VIR ML HYR PI+F+ + L +A+ L + + Sbjct: 285 EVIRFFMLSAHYRSPINFSAELLEQAKNGLERIYNCLDNLEYLKEHAQAEKITDSERELQ 344 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNASA 389 I + A+ +D+NT AI A+ + +E N + L + Sbjct: 345 NRLLGIKAKFIEAMDDDINTADAIAAIFDIVKEVNTNINATSNSSKEIIDFSLSLIKELG 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LGI ++ K + IE+L++ R K K + +AD IR +L+ G ILED Sbjct: 405 GVLGI--AQKSRQKVLDKEIEELIERRQKARKEKDWKTADEIRDKLKEMGIILEDTPQGV 462 Query: 450 NGQ 452 Sbjct: 463 KWT 465 >gi|317047240|ref|YP_004114888.1| cysteinyl-tRNA synthetase [Pantoea sp. At-9b] gi|316948857|gb|ADU68332.1| cysteinyl-tRNA synthetase [Pantoea sp. At-9b] Length = 461 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHAGEIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYVGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESIETLTNRMIGEMHKDFAALGILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+ +I GHAY A+ +++FD S +YG SR+ +++ + G RV Sbjct: 114 ATRHIDEIIELVGRLIERGHAYVADNGDVMFDVLSDKDYGVLSRQDLEQLQAGARVEVAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPAWNSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEVAQSTCAHDG-PYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR +++ L +A L + + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDVSAVAAGGEEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + L A +LGI Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDKTAADALAAKLRQLAEVLGILQQDPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L++ R + K ++ AD R +L + G +LED G + T W+ Sbjct: 406 AQANDDEVAEIEALIKMRNDARQAKDWAQADVARDKLNALGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|157962505|ref|YP_001502539.1| cysteinyl-tRNA synthetase [Shewanella pealeana ATCC 700345] gi|187631637|sp|A8H617|SYC_SHEPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157847505|gb|ABV88004.1| cysteinyl-tRNA synthetase [Shewanella pealeana ATCC 700345] Length = 459 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 254/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ +F + P + MYVCG T+YD HIG+ R + FD++ R LRY + Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + ++ +T + + +D L P ++PR Sbjct: 61 -VNFQRNITDVDDKIIKRANENK------ESCDSLTERLIAEMHRDFDALNMARPDNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I HAY A N +++F SS P YG S + +++ + G RV + Sbjct: 114 ATLHMPEIIEMVEKLIEREHAYVASNGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ L +A+ L + + A SA Sbjct: 286 ATTVRYFLLSGHYRSQLNYSEDNLKQAKSGLERIYTALKDLDLTVEAAPAEEFVAKFKSA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE K L A +LGI K Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKATDMAKASALGVALKQLADVLGILGQDVDTFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 GNDDEVAEIEALIVERNRARAEKDWPAADVARDGLNALGVILED------GPEGTTWRKK 459 >gi|117921105|ref|YP_870297.1| cysteinyl-tRNA synthetase [Shewanella sp. ANA-3] gi|166225306|sp|A0KYM2|SYC_SHESA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|117613437|gb|ABK48891.1| cysteinyl-tRNA synthetase [Shewanella sp. ANA-3] Length = 461 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 256/482 (53%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN++ R+ EF+ I P + MYVCG TVYD HIG+ R + FD++ R LRY Sbjct: 2 PMLKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V + RNITDIDDKII+RA + + + +T + + KD L + P + Sbjct: 62 E--VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMIRPDFE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I +++ ++ GHAY A + +++F +S P YG S + +++ + G RV Sbjct: 114 PRATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL Sbjct: 174 DDNKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQ 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + A +R +L HYR I+++ + L +A L + T+ Sbjct: 286 YDAETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVTAAPAEEFVAKFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L + RE + + A +LG+ K Sbjct: 346 AAMDDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAVAMKQLADVLGLLHQAPDAFFK 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+ ER K + +AD R +L G +LED G T W+ Sbjct: 406 GEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLED------GPSGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 KK 461 >gi|54294205|ref|YP_126620.1| cysteine tRNA synthetase [Legionella pneumophila str. Lens] gi|61216142|sp|Q5WX29|SYC_LEGPL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53754037|emb|CAH15510.1| cysteine tRNA synthetase [Legionella pneumophila str. Lens] gi|307610020|emb|CBW99553.1| cysteine tRNA synthetase [Legionella pneumophila 130b] Length = 456 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 192/474 (40%), Positives = 260/474 (54%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L RK F ++ P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRKKEPFVSLRPGKIGMYVCGITVYDHCHLGHARSMVAFDVMVRYLRSQGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + +I +T++ DT L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIARASERDV------SIDELTAQYIDAMNNDTHALNILPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ ++ G+AY + N ++ ++ + P YG S + I+ G+RV Sbjct: 114 ATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDIEGLVSGSRVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ H LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + G KM+KS GNF TI ++L + Sbjct: 234 HHENEIAQSEAATG-KPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVL-------KEHH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPAVLS 353 VIR +L +HYR P++++ + L A+ L + Q Sbjct: 286 PEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEYWQEQFNQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEHLNKNI 405 A+ +D NT A+ L +LA E K++ L A ILG + L + Sbjct: 346 AMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKDPESFLQSGLAEEE 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+ ERL + ++ AD IR L SKG LED G T W++ Sbjct: 406 KLVIEQLIAERLKARAERNWTKADQIRADLLSKGIELED------GATGTTWRR 453 >gi|24373357|ref|NP_717400.1| cysteinyl-tRNA synthetase [Shewanella oneidensis MR-1] gi|30316159|sp|Q8EG22|SYC_SHEON RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24347617|gb|AAN54844.1|AE015623_6 cysteinyl-tRNA synthetase [Shewanella oneidensis MR-1] Length = 459 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 255/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I+P + MYVCG TVYD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITDIDDKII+RA + + + +T + + KD L P +PR Sbjct: 61 -VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A + +++F +S P YG S + +++ + G RV Sbjct: 114 ATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLS-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR I+++ + L +A L + + +A Sbjct: 286 AETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAAAPAEEFVAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LG+ K Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKLTDMAEASALAVSMKQLADVLGLLHQSPDAFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R +L G +LED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWPAADVARNRLNELGVVLED------GPSGTTWRKK 459 >gi|254496542|ref|ZP_05109412.1| cysteine tRNA synthetase [Legionella drancourtii LLAP12] gi|254354241|gb|EET12906.1| cysteine tRNA synthetase [Legionella drancourtii LLAP12] Length = 455 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 183/473 (38%), Positives = 260/473 (54%), Gaps = 40/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R F +I+P I MYVCG TVYD H+G+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRTKEPFVSINPGKIGMYVCGITVYDHCHLGHARSMVCFDVIVRYLRSQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII RA + I +T+ +D L L P ++PR Sbjct: 61 -VTFVRNITDIDDKIIARANER------GIPIDELTAHYIDAMHEDMRALNILPPNYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LI+ ++ G+AY ++ ++ + S YG S + ++ G RV Sbjct: 114 ATEHIATIIRLIERLLARGNAYVSDNGDVCYQVDSFAEYGKLSHKDLEGLMSGARVEVVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKPGEPYWASPWGNGRPGWHIECSAMAIEELGEHFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + KMSKS GNF TI ++L Sbjct: 234 HHENEIAQSEAATH-KPFANYWLHVGMLQVNNEKMSKSLGNFFTIADVLAKH-------H 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIID----PAVLSA 354 V+R +L +HYR ++++ + L A+ L++ QT T G +D A Sbjct: 286 PEVVRYFLLSSHYRSSLNYSEENLFNAKKALTRLYQTMKDSPVTVNGELDNHWINEFNKA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI------EVCKEHLNKNIS 406 + +D N+ A+ L +L+ E KN L A ++G+ E + +++ Sbjct: 346 MNDDFNSPVALSVLFQLSHEVNKNGTPVLATTLKHLAGLMGLLQSDSAEFLQAGFDEDDK 405 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 AIE+L+ ERL + + AD IR +L ++G LED G + T W++ Sbjct: 406 AAIEQLIAERLQARADRNWERADQIRAELLNQGIELED------GAKGTTWRK 452 >gi|260779213|ref|ZP_05888105.1| cysteinyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450] gi|260605377|gb|EEX31672.1| cysteinyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450] Length = 460 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 178/481 (37%), Positives = 258/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I+ + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPINAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATEFIAEIIELVEKLIERGFAYVADNGDVMFEVGQFDEYGKLSKQDLDQLQAGARVDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + + + PA A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLTVPAAGGEEYVKRFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRIKNDNLEQASAMGSLMRELADVIGILHQEPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEGLIKLRNDSRASKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|218709995|ref|YP_002417616.1| cysteinyl-tRNA synthetase [Vibrio splendidus LGP32] gi|254781698|sp|B7VGZ1|SYC_VIBSL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218323014|emb|CAV19191.1| Cysteinyl-tRNA synthetase [Vibrio splendidus LGP32] Length = 461 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LNFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIIELVEKLIQRGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDIDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHGT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDVTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L ++ARE K L + A I+GI Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESIEKASALGALMRELADIIGILHQDPEAFLQGD 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEGLIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|51595384|ref|YP_069575.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|186894407|ref|YP_001871519.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] gi|61216168|sp|Q66DK9|SYC_YERPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558803|sp|B2K7N2|SYC_YERPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|51588666|emb|CAH20275.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|186697433|gb|ACC88062.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] Length = 461 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNDLGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|217973913|ref|YP_002358664.1| cysteinyl-tRNA synthetase [Shewanella baltica OS223] gi|254781693|sp|B8E5F2|SYC_SHEB2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|217499048|gb|ACK47241.1| cysteinyl-tRNA synthetase [Shewanella baltica OS223] Length = 459 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 254/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + + +A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFVAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFFQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K +++AD R +L G LED T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELEDS------PSGTTWRKK 459 >gi|119774358|ref|YP_927098.1| cysteinyl-tRNA synthetase [Shewanella amazonensis SB2B] gi|187631632|sp|A1S4X2|SYC_SHEAM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|119766858|gb|ABL99428.1| cysteinyl-tRNA synthetase [Shewanella amazonensis SB2B] Length = 459 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSISRQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVCFDMIVRYLRYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITD+DDKII+RA + ++ +T + + D L + P+ +PR Sbjct: 61 -VNYQRNITDVDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMVRPSFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++ ++ GHAY A + +++FD SS YG S + +++ + G RV Sbjct: 114 ATLHIDEIIDMVTRLLDRGHAYVAADGDVLFDVSSYAAYGRLSGQDLEQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 NKRNPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNTWMHTGMVMVDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ L +A L + + A ++A Sbjct: 286 AQTVRYFLLSGHYRSQLNYSEDNLKQARASLERMYTALKGLDLTVEAAGADEFVSRFMAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLP------IFNASAHILGIE------VCKEH 400 + +D NT A L + RE K D+ A +LGI + Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKTSDMAAASQLGVALKELAEVLGILSSTPEAFLQGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+ ER K + +AD R +L + G +LED G T W++K Sbjct: 406 GNADEVAEIEALIVERNRARAEKDWPAADVARDRLNALGVVLED------GPEGTTWRKK 459 >gi|322514668|ref|ZP_08067696.1| cysteine--tRNA ligase [Actinobacillus ureae ATCC 25976] gi|322119366|gb|EFX91475.1| cysteine--tRNA ligase [Actinobacillus ureae ATCC 25976] Length = 459 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 266/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A +++++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAADDDVMFDVESFKKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSCCAHSGD-YVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLE-------KYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 + +R L HYR +++++ L A L + + A +A Sbjct: 286 SETLRYFFLTAHYRSLLNYSLDNLDLARSALERLYTSLRGCDLSVQVAGSEQYVEAFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAGVLGLLYQDPEAFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 ANNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVLEDTPN------GTMWRK 458 >gi|113970833|ref|YP_734626.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-4] gi|123029526|sp|Q0HH98|SYC_SHESM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|113885517|gb|ABI39569.1| cysteinyl-tRNA synthetase [Shewanella sp. MR-4] Length = 461 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 253/482 (52%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN++ R+ EF+ I P + MYVCG TVYD HIG+ R + FD++ R LRY Sbjct: 2 PMLKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V + RNITDIDDKII+RA + + + +T + + KD L + P + Sbjct: 62 E--VNFQRNITDIDDKIIKRANENQ------EDCNTLTDRLIGEMHKDFDALNMIRPDFE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I +++ ++ GHAY A + +++F +S P YG S + +++ + G RV Sbjct: 114 PRATLHITEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL Sbjct: 174 DDNKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQ 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + +R +L HYR I+++ + L +A L + Sbjct: 286 YDPETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAPAPAEEFVAKFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L + RE + + A +LG+ K Sbjct: 346 AAMDDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAVAMKQLADVLGLLHQAPDAFFK 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+ ER K + +AD R +L G +LED G T W+ Sbjct: 406 GEGSDDEVAEIEALIVERNRARVEKDWPAADVARNRLNELGVVLED------GPSGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 KK 461 >gi|86147083|ref|ZP_01065400.1| cysteinyl-tRNA synthetase [Vibrio sp. MED222] gi|85835148|gb|EAQ53289.1| cysteinyl-tRNA synthetase [Vibrio sp. MED222] Length = 461 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + +VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LNFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A N +++F+ YG S++ +++ + G RV Sbjct: 114 ATEFITEIIELVEKLIQRGFAYVASNGDVMFEVKKFDEYGKLSKQDLEQLQAGARVDIDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHGT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDVTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L ++ARE K L + A I+GI Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESIEKASALGALMRELADIIGILHQDPEAFLQGD 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEGLIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|20808681|ref|NP_623852.1| cysteinyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] gi|22257048|sp|Q8R7T3|SYC_THETN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|20517317|gb|AAM25456.1| Cysteinyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] Length = 467 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 188/488 (38%), Positives = 253/488 (51%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ R EF+ + + MYVCGPTVY++ HIGNAR IVFD + R L Y Sbjct: 1 MRLYNTMTRTKEEFKPLKDKVVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII RA++E N I + +++ KD L T PR Sbjct: 59 TVNYVQNFTDIDDKIINRAKEE------NTTEKEIAERFIEEYFKDADALGIKRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY + + F+T+ +YG S + IDE G RV Sbjct: 113 ATEHIDDIIEFIKILIDKGYAYVVDGNVYFETAKFKDYGKLSHKNIDELMAGARVEIDEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPLDFALWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ EL E + Sbjct: 233 HENEIAQSEAAY-DQPFSKYWMHIGYLNVNNEKMSKSKGNFFTVRELTE-------KYDP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 V+RL MLM HYR PI+F++ L +A+ + + Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLLDQAKSAYERLSNAVVNLKHLANITKDRELSDEEKDLI 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ + N +L +F + + Sbjct: 345 VKFDEYKKQFEEAMDDDFNTADAISVLFEMAKTANANLSGNSSKKLVEYILEMFLKLSDV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + I +L++ER K K + AD IR +L+ +G ILED Sbjct: 405 LGLSYKNAET-EIEDEEILRLIEERQKARKEKNWKLADEIRDKLKERGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PEGVRWKR 465 >gi|253689302|ref|YP_003018492.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259511839|sp|C6DAX2|SYC_PECCP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|251755880|gb|ACT13956.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 461 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 174/482 (36%), Positives = 251/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + + +T++ + D L L P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRAAEN------GETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A N +++F + P YG SR+ +D+ + G RV Sbjct: 114 ATHHITDIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGVLSRQDLDQLQAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSSCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 +R ++ HYR ++++ L +A L + + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALERLYTALRGTDPDAAAQGGDEFEGRFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAQAANQLASALRKLSGVLGLLEQDPEQFLQNG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVDNDEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|318604716|emb|CBY26214.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica Y11] Length = 461 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 185/482 (38%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLQRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIARNHAYVAANGDVMFSVESDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLV-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDVNAAPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKAEDITAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADGDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTVWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|269960838|ref|ZP_06175209.1| cysteinyl-tRNA synthetase [Vibrio harveyi 1DA3] gi|269834502|gb|EEZ88590.1| cysteinyl-tRNA synthetase [Vibrio harveyi 1DA3] Length = 460 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 253/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFNEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLNAAPAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGDDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|257464496|ref|ZP_05628867.1| cysteinyl-tRNA synthetase [Actinobacillus minor 202] gi|257450156|gb|EEV24199.1| cysteinyl-tRNA synthetase [Actinobacillus minor 202] Length = 459 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 188/479 (39%), Positives = 266/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ I MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQIGMYVCGVTVYDLCHFGHGRTFVSFDVIVRYLRYSGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 61 -VRYVRNITDVDDKIIKRALENK------ETCDQLVDRMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVEKLIANGHAYVAEDGDVMFDVESFKQYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKENEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R L HYR +D++V+ L A L + + + A +A Sbjct: 286 AESLRYFFLTAHYRSLLDYSVENLDLARSALERLYTSLRGCDVSGVAEGGEHYVEAFKTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIARELNKLKIEDMAKANGLAVRLKELAGVLGLLEQEPESFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 TNSDEAAEIEALIKQRNEAKANKNWAVADEVRDKLKAMNIVLEDTPN------GTIWRK 458 >gi|15641850|ref|NP_231482.1| cysteinyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591342|ref|ZP_01678630.1| cysteinyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121730275|ref|ZP_01682651.1| cysteinyl-tRNA synthetase [Vibrio cholerae V52] gi|147673703|ref|YP_001217382.1| cysteinyl-tRNA synthetase [Vibrio cholerae O395] gi|227081977|ref|YP_002810528.1| cysteinyl-tRNA synthetase [Vibrio cholerae M66-2] gi|229508055|ref|ZP_04397560.1| cysteinyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229511706|ref|ZP_04401185.1| cysteinyl-tRNA synthetase [Vibrio cholerae B33] gi|229518845|ref|ZP_04408288.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC9] gi|229607616|ref|YP_002878264.1| cysteinyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254848934|ref|ZP_05238284.1| cysteinyl-tRNA synthetase [Vibrio cholerae MO10] gi|255745392|ref|ZP_05419341.1| cysteinyl-tRNA synthetase [Vibrio cholera CIRS 101] gi|298498113|ref|ZP_07007920.1| cysteinyl-tRNA synthetase [Vibrio cholerae MAK 757] gi|11387140|sp|Q9KQZ9|SYC_VIBCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631647|sp|A5F763|SYC_VIBC3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781697|sp|C3LNF1|SYC_VIBCM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|9656376|gb|AAF94996.1| cysteinyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546806|gb|EAX56972.1| cysteinyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121627977|gb|EAX60538.1| cysteinyl-tRNA synthetase [Vibrio cholerae V52] gi|146315586|gb|ABQ20125.1| cysteinyl-tRNA synthetase [Vibrio cholerae O395] gi|227009865|gb|ACP06077.1| cysteinyl-tRNA synthetase [Vibrio cholerae M66-2] gi|227013746|gb|ACP09956.1| cysteinyl-tRNA synthetase [Vibrio cholerae O395] gi|229343534|gb|EEO08509.1| cysteinyl-tRNA synthetase [Vibrio cholerae RC9] gi|229351671|gb|EEO16612.1| cysteinyl-tRNA synthetase [Vibrio cholerae B33] gi|229355560|gb|EEO20481.1| cysteinyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229370271|gb|ACQ60694.1| cysteinyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254844639|gb|EET23053.1| cysteinyl-tRNA synthetase [Vibrio cholerae MO10] gi|255737222|gb|EET92618.1| cysteinyl-tRNA synthetase [Vibrio cholera CIRS 101] gi|297542446|gb|EFH78496.1| cysteinyl-tRNA synthetase [Vibrio cholerae MAK 757] Length = 459 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYVADNGDVMFEVSQYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGSGRPGWHIECSAMNSSILGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|229515228|ref|ZP_04404688.1| cysteinyl-tRNA synthetase [Vibrio cholerae TMA 21] gi|229347933|gb|EEO12892.1| cysteinyl-tRNA synthetase [Vibrio cholerae TMA 21] Length = 459 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ S YG S++ +D+ + G RV + Sbjct: 114 ATAYIEEIIALVERLIERGFAYIADNGDVMFEVSRYSEYGKLSKQDLDQLQAGARVDIEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRSVPAAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDIAREINRLKSEDMTNASALGSLMRELADVIGILYQEPEAFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R K +++AD R +L G +LED G T W++K Sbjct: 406 AEDEDAAQIEALIKLRNDSRATKDWANADLARDKLNEMGIVLED------GPNGTTWRRK 459 >gi|53805250|ref|YP_113028.1| cysteinyl-tRNA synthetase [Methylococcus capsulatus str. Bath] gi|61216155|sp|Q60BG8|SYC_METCA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|53759011|gb|AAU93302.1| cysteinyl-tRNA synthetase [Methylococcus capsulatus str. Bath] Length = 465 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 186/486 (38%), Positives = 264/486 (54%), Gaps = 52/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ ++P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR+ + Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHLGLK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII RA + + I +T++ + +D L L P H+PR Sbjct: 61 -VTYVRNVTDIDDKIIRRA------VENGETIGALTARFIEAMHEDERALGVLPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++ +I +I GHAY +N ++ + +S PNYG S + +DE + G R+ Sbjct: 114 ATESIDDILAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG+DL FP Sbjct: 174 AKRDPLDFVLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ + KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSEGATGEH-FVNYWMHNGFVRINEEKMSKSLGNFFTVREILAR-------YR 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGIIDPA 350 V+R +L +HYR P++++ + L EA LS+ Sbjct: 286 PEVVRFFILNSHYRSPLNYSDENLDEAAAALSRLYTALRGLAPDLPLPLGEDRDEGFSSR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL- 401 A+ +D NT AI L LARE + L + ++LG+ Sbjct: 346 FADAMQDDFNTPEAIAVLFDLAREINRHKAAEPAKAAALGATLKSLGNVLGLLQTDPEAY 405 Query: 402 -------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + IE ++ RL K K ++ +D IR +L+++G ILED Sbjct: 406 FKSDAGGSGLSDADIETRIRARLEARKAKNWAESDRIRDELKAQGIILEDSAA------G 459 Query: 455 TRWKQK 460 T W+++ Sbjct: 460 TTWRRE 465 >gi|315633667|ref|ZP_07888957.1| cysteine--tRNA ligase [Aggregatibacter segnis ATCC 33393] gi|315477709|gb|EFU68451.1| cysteine--tRNA ligase [Aggregatibacter segnis ATCC 33393] Length = 459 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVVARYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCEQLVDRMVVEMYKDFDALNILRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIAIVEKLIQRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHG-NQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R +L HYR ++++ + L A L + A A Sbjct: 286 AESVRYFLLSAHYRSQLNYSEENLNLAHGALERLYTALRGTDKSAVAFGGENFVDTFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L A ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMARELNKLKTEDMDKANGLAARLRELAGILGLLQLDPEQFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K + +AD R L G +LED G T W+++ Sbjct: 406 SDDDEVAKIEGLIKQRNEARAAKDWPAADAARNALTQMGIVLED------GLNGTTWRKQ 459 >gi|238762909|ref|ZP_04623877.1| Cysteinyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] gi|238698920|gb|EEP91669.1| Cysteinyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] Length = 461 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 187/482 (38%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLKRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIAREHAYVAANGDVMFSVESDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNSKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKAEDMTAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|332160825|ref|YP_004297402.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665055|gb|ADZ41699.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860142|emb|CBX70464.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica W22703] Length = 461 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 185/482 (38%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLQRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIARNHAYVAANGDVMFSVESDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDVNAAPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKAEDITAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADGDEVAKIEALIKQRNDARTSKDWALADSARDQLNELGIVLED------GPQGTVWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|170025371|ref|YP_001721876.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] gi|229558805|sp|B1JHJ1|SYC_YERPY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169751905|gb|ACA69423.1| cysteinyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] Length = 461 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGVEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKDWALADAARDQLNDLGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|258626834|ref|ZP_05721641.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM603] gi|258580881|gb|EEW05823.1| cysteinyl-tRNA synthetase [Vibrio mimicus VM603] Length = 459 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 178/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEEFKPIVAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + Q+ D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAENA------ETCESLTERLIQEMYADFDALNIKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L+Q +I G AY A+ +++F+ YG S++ +++ + G RV + Sbjct: 114 ATAYIEEIIALVQRLIERGFAYVADNGDVMFEVGKYDEYGKLSKQDLEQLQAGARVDVEA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + PA +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLNQARASLERLYNALRGLDRRVPAAGGEEYLSRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L +ARE + L + A ++GI + Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKSEDLTNASALGSLMRELADVIGILYQEPETFFQGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R +K +++AD R +L G +LED N T W++K Sbjct: 406 AEDEEAEQIEALIKLRNDSRAVKDWANADMARDKLNEMGIVLEDCPN------GTTWRRK 459 >gi|148980442|ref|ZP_01816064.1| cysteinyl-tRNA synthetase [Vibrionales bacterium SWAT-3] gi|145961245|gb|EDK26558.1| cysteinyl-tRNA synthetase [Vibrionales bacterium SWAT-3] Length = 461 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVTRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A N +++F+ YG S++ +D+ + G RV Sbjct: 114 ATEFITEIIELVEKLIERGFAYVASNGDVMFEVKKFDEYGKLSKQDLDQLQAGARVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF++WK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVVWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI +LL + Sbjct: 234 HHENEIAQSCCAHGTD-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDLLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLTAAPAGGEEYVTRFSTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L ++ARE K L + A I+GI Sbjct: 346 MNDDFNTPEAYSVLFEMAREINRIKTESIEKASGLGALMRELADIIGILHQDPEAFLQGD 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L++ R K +++AD R +L G +LED G T W+ Sbjct: 406 AAGNDDEVAEIEALIKLRNDSRASKDWANADLARDKLNELGIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|123443257|ref|YP_001007231.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|187470968|sp|A1JNP9|SYC_YERE8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|122090218|emb|CAL13084.1| cysteinyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 461 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------LENNETCEQLTTRMLVEMHKDFDALNLKRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIALTERLIARNHAYVAANGDVMFSVESDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A++LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDITAANALAAELRKLAYVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDDDEVAKIEVLIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|56460141|ref|YP_155422.1| cysteinyl-tRNA synthetase [Idiomarina loihiensis L2TR] gi|61216136|sp|Q5QYP3|SYC_IDILO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56179151|gb|AAV81873.1| Cysteinyl-tRNA synthetase [Idiomarina loihiensis L2TR] Length = 459 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 268/478 (56%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL RK F+ I P ++ +YVCG T YD+ HIG+AR + FD++ R LR Sbjct: 3 LTVFNTLTRKKQLFEPIQPGHVGIYVCGVTTYDYCHIGHARTYVAFDIVVRYLRKLGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + +T + ++ KD L + P +PR Sbjct: 61 SVKYVRNITDLDDKIIKRAAEN------GEDFHQVTERFIREMHKDFDALNLVRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+H+ ++I +I+ +I +G+AYEA N +++FD S+ +YG SR+ +++ + G+RV Sbjct: 115 VTSHMDEIILMIERLIENGNAYEAGNGDVLFDVSTFNDYGKLSRQDLEQLQAGSRVDVDA 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 175 AKQDPLDFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNKKHLGSTFDIHGGGSDLSFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA++ E W+H+G + ++ KMSKS GNF TI +LE + Sbjct: 235 HHENEIAQSCCANQSE-YVKYWMHSGMVQVDNEKMSKSLGNFFTIRSVLE-------QYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPAVLS 353 A +R +L +HYR +++T + L +A L + + + Sbjct: 287 AETVRYFLLSSHYRSQLNYTQENLDQAHSALERLYTALRDITPQTASEELRSKYWQSFQQ 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL---- 401 A+ +DLN A+ L ++ARE +N + L + A ++G+ Sbjct: 347 AMDDDLNAPEAMSVLFEIAREINRNRESAPDTAAQLAHVLLELAEVMGLLQQSPEEFLQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+ +R + K +++AD R +L + G +LED G TRW++ Sbjct: 407 DDDDVAKIEALIAKRNQAREDKDWAAADEARDELTNMGIVLED------GAEGTRWRR 458 >gi|238760398|ref|ZP_04621538.1| Cysteinyl-tRNA synthetase [Yersinia aldovae ATCC 35236] gi|238701403|gb|EEP93980.1| Cysteinyl-tRNA synthetase [Yersinia aldovae ATCC 35236] Length = 461 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 184/482 (38%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +P Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLQRPDLEPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A+ +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELTERLIARNHAYVADNGDVMFSVESDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDMTAANALAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|260913075|ref|ZP_05919557.1| cysteine-tRNA ligase [Pasteurella dagmatis ATCC 43325] gi|260632662|gb|EEX50831.1| cysteine-tRNA ligase [Pasteurella dagmatis ATCC 43325] Length = 467 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 264/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F+ I + + MYVCG TVYD H+G+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTREKEIFKPIHANKVGMYVCGITVYDLCHVGHGRTFVCFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRA------LKNRESCDQLVDRMVAEMYKDFDMLNVLRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY + N +++F+ S YG SR+ +++ + G RV + Sbjct: 114 ATHHIAEIITLVEKLIQRGHAYVSSNGDVMFNVESFKEYGKLSRQNLEQLQAGARVEIVH 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKPEEPSWDSPWGPGRPGWHIECSAMNYKVLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF T+ ++L + Sbjct: 234 HHENEIAQSCCAHG-NQYVNYWMHSGMIMVDREKMSKSLGNFFTLRDVLNI-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR P++++ + L A L + A A Sbjct: 286 AESVRYFLLNAHYRSPLNYSEENLNLAHTALERLYTALRGTDKSAIACGGENYINAFKEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L A ILG+ E + Sbjct: 346 MNDDFNTPNAVSVLFEIAREVNKLKNEDMEKANSLAARLRELADILGLLYQDPEEFLQSG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 L+ IE L+++R K +++AD R+QL +LED G T W++ Sbjct: 406 LDDEEVKLIESLIKQRNEARAAKDWATADAAREQLSKMKVVLED------GANGTTWRK 458 >gi|330963331|gb|EGH63591.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 460 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ ++T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDVLTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIEKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ DPA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAADPAGGEAFVERFTAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRETDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|146292587|ref|YP_001183011.1| cysteinyl-tRNA synthetase [Shewanella putrefaciens CN-32] gi|166225305|sp|A4Y5H9|SYC_SHEPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145564277|gb|ABP75212.1| cysteinyl-tRNA synthetase [Shewanella putrefaciens CN-32] Length = 461 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 260/482 (53%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYN++ R+ EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY Sbjct: 2 PMLKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V + RNITD+DDKII+RA + N++ +T + + +D L L P + Sbjct: 62 E--VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHRDFDALNMLRPDFE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 PRATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL Sbjct: 174 DENKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQ 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VL 352 + A +R +L HYR ++++ L +A L + + A Sbjct: 286 YDAETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFIVKFK 345 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L + R+ K L A +LG+ K Sbjct: 346 AAMDDDFNTPEAYSVLFDMVRDINRLKATDIAKASALAVAMKQLADVLGLLGQDPDAFFK 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+ ER K +++AD R +L+ G +LED G T W+ Sbjct: 406 GEGSDDEVAEIEALIVERNRARSEKDWAAADVARNRLDILGVVLED------GPSGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 KK 461 >gi|126173835|ref|YP_001049984.1| cysteinyl-tRNA synthetase [Shewanella baltica OS155] gi|187631633|sp|A3D302|SYC_SHEB5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|125997040|gb|ABN61115.1| cysteinyl-tRNA synthetase [Shewanella baltica OS155] Length = 459 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 254/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHQDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 TKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + + +A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFVAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMVREINRLKLTDMAQASALAVTLKQLADVLGLLSQEPEAFFQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K +++AD R L G LED G T W++K Sbjct: 406 GSYDEVAEIEALIVERNRARTEKDWAAADVARNCLNELGVELED------GPSGTTWRKK 459 >gi|330503048|ref|YP_004379917.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina NK-01] gi|328917334|gb|AEB58165.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina NK-01] Length = 461 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 190/478 (39%), Positives = 263/478 (55%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ ++ +++RMYVCG TVYDF HIG+AR M+ FDV+ R LR + Sbjct: 3 LSIYNTLSKVKEPFKPLEGNSVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRQRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + + + +D RL L P +PR Sbjct: 62 -VTYVRNITDIDDKIIKRANEN------GEPFEALVERMIAAMHEDEARLNVLRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M +IQ +I G AY N ++ + + YG SRRKIDE K+G R+ Sbjct: 115 ATGHIAGMHQMIQTLIDKGFAYAPGNGDVYYRVTKFETYGKLSRRKIDELKIGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG+GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 IKEDPLDFVLWKAAKPGEPSWESPWGKGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KQYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ PA SA+ Sbjct: 287 PEVVRYLLVSSHYRSPINYSEESLKEAKGALERFYNGLKGLPEAAPAGGEAFVERFGSAM 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-------EH 400 +D N+ A L ++ RE + + L A +LG+ + Sbjct: 347 DDDFNSPEACAVLFEMIREVNRLRESDLQAAAGLAAQLKQLASVLGVLQLEPDAFLQAGA 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+ RL K ++ +D IR QL + G +LED K T W+ Sbjct: 407 AGKVDAAEVEALIAARLQARADKNWAESDRIRDQLTAMGVVLEDGK------GGTTWR 458 >gi|320016265|gb|ADV99836.1| cysteinyl-tRNA synthetase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 461 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEMTERLIARGHAYVASNGDVMFAVDSDPDYGVLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P E WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGESRWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKNEDMAAANGLAAELRKLAQVLGLLEQDPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQADDDEVAKIEALIKQRNDARSSKNWALADAARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|156974130|ref|YP_001445037.1| cysteinyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116] gi|156525724|gb|ABU70810.1| hypothetical protein VIBHAR_01842 [Vibrio harveyi ATCC BAA-1116] Length = 460 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 253/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +++ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVGKFNEYGKLSKQDLEQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDLNAAPAGGEEYVSRYTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTENLEKASELGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GPEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|330878748|gb|EGH12897.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 460 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ ++PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAVEPAGGEAFVERFTAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRETGVTAAAGLAARLKQLACVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|238785350|ref|ZP_04629338.1| Cysteinyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] gi|238713741|gb|EEQ05765.1| Cysteinyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] Length = 461 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 185/482 (38%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I ++ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------IENSETCEQLTTRMLAEMHKDFDALNLERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L++ +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIELVERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGAGRPGWHIECSAMNSKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANAAPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIAREVNRLKTEDIAAANGLAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTDGDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|212636030|ref|YP_002312555.1| cysteinyl-tRNA synthetase [Shewanella piezotolerans WP3] gi|226735064|sp|B8CRG0|SYC_SHEPW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212557514|gb|ACJ29968.1| Cysteinyl-tRNA synthetase [Shewanella piezotolerans WP3] Length = 459 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 257/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ +F I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKLYNTLTRQKEQFVPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCDSLTERLIGEMHRDFDSLNMARPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I +++ +I HAY A N +++F SS P YG S + +++ + G RV + Sbjct: 114 ATLHMPEIIEMVEKLIAREHAYVAANGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVED 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRDPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDTK-YVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----KGIIDPAVLS----A 354 A +R +L HYR ++++ + L +A+ L + A ++ A Sbjct: 286 AATVRYFLLSGHYRSQLNYSEENLKQAKSGLERIYTALKDLDLTVDAAPAEAFIAQFKRA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L ++ RE + L A +LGI K Sbjct: 346 MDDDFNTPEAYSVLFEMVREINRLKLTDMQQASALGVALKQLADVLGILGQDVDTFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R L + G ILED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWPAADVARDGLNALGVILED------GPEGTTWRKK 459 >gi|240949657|ref|ZP_04753992.1| cysteinyl-tRNA synthetase [Actinobacillus minor NM305] gi|240295915|gb|EER46591.1| cysteinyl-tRNA synthetase [Actinobacillus minor NM305] Length = 459 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 187/479 (39%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ I MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQIGMYVCGVTVYDLCHFGHGRTFVSFDVIVRYLRYSGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 61 -VRYVRNITDVDDKIIKRALENK------ETCDQLVDRMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIVAMVEKLIANGHAYVAEDGDVMFDVESFKQYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W+SPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKENEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R L HYR +D++V+ L A L + + A +A Sbjct: 286 AESLRYFFLTAHYRSLLDYSVENLDLARSALERLYTALRGCDVSGAAEGGEHYVEAFKTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGLLEQDPESFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 TNSDEAAEIEALIKQRNEAKANKNWAVADEVRDKLKAMNIVLEDTPN------GTIWRK 458 >gi|251793189|ref|YP_003007917.1| cysteinyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] gi|247534584|gb|ACS97830.1| cysteinyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVVEMYKDFDALNILRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++ +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEITAIVEKLIQRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHG-NQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A L + A A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLNLAHGALERLYTALRGTDKSAVAFGGENFVDAFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L A ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEIARELNKLKTQDMAKANGLAARLRELAAILGLLQLDPEQFLQAS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ IE L+++R K + +AD R L G +LED G T W+++ Sbjct: 406 SDEDEVAKIEALIKQRNEARVAKDWPAADAARNALTQMGIVLED------GPNGTTWRKQ 459 >gi|330810612|ref|YP_004355074.1| Cysteine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378720|gb|AEA70070.1| Cysteine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 460 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 177/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDI+DKII RAR+ + +T + + +D RL L P +PR Sbjct: 61 -LTYVRNITDIEDKIINRAREN------GEPYDALTERMIKAMHEDEARLNILKPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M+ +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMLSMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGAKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPSVPAAGGEAFVARFTEVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLNAAAGLAARLKELASVLGVLQLEADDFLQAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLTARANKDWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|157369409|ref|YP_001477398.1| cysteinyl-tRNA synthetase [Serratia proteamaculans 568] gi|187631631|sp|A8GAY0|SYC_SERP5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157321173|gb|ABV40270.1| cysteinyl-tRNA synthetase [Serratia proteamaculans 568] Length = 461 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII RA ++ +T++ + D L P +PR Sbjct: 60 SLNYVRNVTDVDDKIIRRA------TENGESCDQLTTRMLAEMHADFDSLLIERPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +++ + Q +I GHAY A N +++F S P YG SR+ +D+ + G RV Sbjct: 114 ATQHIAEIVEITQRLIDRGHAYVASNGDVMFSIDSDPQYGLLSRQDLDQLQAGARVEIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGAGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCAHDG-PYVNYWMHSGMVMIDKEKMSKSLDNFFTIRDVLG-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARTALERLYTALRGTDVNAQPAGGEVFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A AL LARE + + L A +LG+ + L Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKAEDLTAANGLAAELRKLAKVLGLLQQEPELFLQGG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K ++ AD R +L +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIKQRNDARKAKDWALADAARDRLNEMNIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|323499496|ref|ZP_08104466.1| cysteinyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] gi|323315369|gb|EGA68410.1| cysteinyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] Length = 460 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 180/481 (37%), Positives = 257/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRANEN------GESCDSLTERLIGEMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A+ +++F+ + +YG SR+ +D+ + G RV + Sbjct: 114 ATEYIKEIIELVETLIERGFAYVADNGDVMFEIAKYDDYGKLSRQDLDQLQAGARVEIES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSSLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGTD-YVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ L +A L + + I PA A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDISVPAAGGEDYVKRFTDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKTEDVMAASALGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGNDDEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GSEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|37527666|ref|NP_931010.1| cysteinyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii TTO1] gi|61216271|sp|Q7N0S5|SYC_PHOLL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|36787101|emb|CAE16176.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase) (CysRS) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 461 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 184/482 (38%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHPGKVGMYVCGITIYDLCHIGHGRTFVSFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + ++ +T + + KD L L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRAAENS------ESCDDLTGRMLAEMYKDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L +++I GHAY A+ +++F S +YG SR+ + + + G RV Sbjct: 114 ATRHIQEIIALTESLIKRGHAYVADNGDVMFSVESDQDYGLLSRQDLSQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGAGRPGWHIECSAMNSKQLGNHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR +++T L +A L ++ I + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEDNLKQARTALERFYTALRGTDASVPPAGGEIFEARFIDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEH------ 400 + +D NT A L + RE + + L A ILG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMVREINRLKSEDMDAANGLAAELRKLAGILGLLQQQPEQFLHRG 405 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K + AD R QL G LED G + T W+ Sbjct: 406 IQADDEEIAKIEALIKQRNDARKNKDWPLADSARNQLNEMGIELED------GPQGTSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|307822084|ref|ZP_07652316.1| cysteinyl-tRNA synthetase [Methylobacter tundripaludum SV96] gi|307736650|gb|EFO07495.1| cysteinyl-tRNA synthetase [Methylobacter tundripaludum SV96] Length = 492 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 187/482 (38%), Positives = 267/482 (55%), Gaps = 47/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK FQ + MYVCG TVYD+ HIG+AR M+VFD + R R+ E Sbjct: 32 LKIYNTLTRKKEPFQPRVAGKVGMYVCGMTVYDYCHIGHARVMVVFDTVARYFRHQGYE- 90 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA I + +T + +D LA L P +PR Sbjct: 91 -LTYVRNITDIDDKIIQRA------IENGEDYGKLTERFIDAMHEDERALAVLPPDLEPR 143 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +I +I+ ++ AY +N ++ + + +YG S + +D+ + G RV Sbjct: 144 ATQSIADIISMIKTLVDKDLAYVGSNGDVFYAVTKFKDYGRLSGKNLDDLQAGERVDVDL 203 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK + EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG+DL FP Sbjct: 204 AKRNPMDFVLWKMAKANEPAWDSPWGLGRPGWHIECSAMSTCCLGNHFDIHGGGMDLQFP 263 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A EK N+W+HNGF+ ++ KMSKS GNF T+ E+L + Sbjct: 264 HHENEIAQSEGATG-EKFVNVWMHNGFVRVDDEKMSKSLGNFFTVREVLN-------QYK 315 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIIDPA----VLSA 354 +IR +L +HYR P++++ ++L +A+ L++ +T++ I+ A A Sbjct: 316 PEIIRFFILSSHYRSPLNYSDEQLNDAKAALTRLYTALRGVETTAEAAIEEAYKTRFEQA 375 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L LAR+ K + L + +LGI K Sbjct: 376 MDDDFNTPVALAVLFDLARDLNKAKELDQQKACALAATLKYLSGLLGILQDDPDAFLKGS 435 Query: 401 LNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + +E+ +Q RL K K ++ AD IR L+ +G ILED + T W+ Sbjct: 436 GDAAVLGEETVEQQIQARLDAKKAKDWALADKIRNDLKEQGVILEDSPDGT-----TSWR 490 Query: 459 QK 460 ++ Sbjct: 491 RE 492 >gi|227112835|ref|ZP_03826491.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 461 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 175/482 (36%), Positives = 249/482 (51%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA I + +T++ + D L L P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A N +++F + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGVLSRQDLDQLQAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSSCAHDGS-YVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------GIIDPAVLSA 354 +R ++ HYR ++++ L +A L + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALDRLYTALRGTDASVAAHGGDEFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDVQAANQLASALRKLSGVLGLLEQDPEQFLQNG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVDDDEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|190891109|ref|YP_001977651.1| cysteinyl-tRNA synthetase [Rhizobium etli CIAT 652] gi|229558782|sp|B3PUS4|SYC_RHIE6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|190696388|gb|ACE90473.1| cysteinyl-tRNA synthetase protein [Rhizobium etli CIAT 652] Length = 463 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 266/459 (57%), Positives = 344/459 (74%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 4 TPELKLYNTLTREKSVFAPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 GE VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P Sbjct: 64 GESHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPNV 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PRAT++I +MI +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 124 EPRATDNIEEMIEIIEKLISNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARVAV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLI Sbjct: 184 DAHKKNPGDFVLWKLSSHNEPGWDSPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLI 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR Sbjct: 244 FPHHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRK 303 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNT 361 WP V+RLAMLMTHYREPIDF+++RL EAE LL+KWP T D AV++AL +DLNT Sbjct: 304 WPGAVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPATEPGDAKPDEAVMNALADDLNT 363 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 V+A+QALH LA+ + + + F A+A +LG+ K +++ ++ A++ LV RL +LK Sbjct: 364 VAAVQALHALAQAAHTDAAVGATFAATAFLLGVLPKKAEIDEAVAAAVDALVAIRLEMLK 423 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 424 AKNFAEADKIRDELTAKGIQLKDGKDAATGERVTTWEVK 462 >gi|227329459|ref|ZP_03833483.1| cysteinyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 461 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 175/482 (36%), Positives = 248/482 (51%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA I + +T++ + D L L P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A N +++F + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGVLSRQDLDQLQAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSSCAHDGS-YVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------GIIDPAVLSA 354 +R ++ HYR ++++ L +A L + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALDRLYTALRGTDASVAAHGGDEFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDVQAANQLASALRKLSGVLGLLEQDPEQFLQNG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVDDEEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|302390630|ref|YP_003826451.1| cysteinyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] gi|302201258|gb|ADL08828.1| cysteinyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] Length = 465 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 174/486 (35%), Positives = 251/486 (51%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF ++ + + +Y CGPTVYDF H+GNAR I FDV+ L+Y E Sbjct: 1 MRIYNTLTRRKEEFIPLNGNKVTIYTCGPTVYDFFHVGNARVFITFDVIRNYLKYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA +E + + + +++ KD L PR Sbjct: 60 -VKFVQNFTDIDDKMIKRANEE------GVTVKELGDRFIKEYFKDADALNIKRADVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AYE ++ F P YG S + ++E + G RV Sbjct: 113 ATEHIEDIIEFIKVLIEKGYAYEVGGDVYFAARKFPGYGKLSGQNLEELEAGARVEPGEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP W SPWG GRPGWHIECSAM+ +LG+ DIHGGG DLIFPH Sbjct: 173 KKDPIDFALWKAKKPGEPSWPSPWGEGRPGWHIECSAMAMKHLGETIDIHGGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS + A ++H G+LN+ KMSKS GNF T+ ++L + + Sbjct: 233 HENEVAQSEAFTG-KPFARFFMHVGYLNINNEKMSKSLGNFFTVRDIL-------KEYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------------- 350 V+R ML +HYR PI+F+ + L +++ L + + ++ A Sbjct: 285 EVLRFLMLSSHYRSPINFSRELLDQSKSALERLYNALYAMEHLENAAPERPLNGEEEEYL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASAHILG-- 393 A+ +D NT AI L + RE + + + LG Sbjct: 345 RRQLENKNKFKDAMDDDFNTAGAIAVLFDMIREFNVSLNENSSREAVKKTKEMVLELGGV 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + IE+ ++ER K K ++ AD IR +L ++G ILED Sbjct: 405 LGFFSKFEPVLLDEEIEQKIKEREEARKAKNYALADKIRDELRARGIILEDT------PA 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKR 464 >gi|238791509|ref|ZP_04635147.1| Cysteinyl-tRNA synthetase [Yersinia intermedia ATCC 29909] gi|238729125|gb|EEQ20641.1| Cysteinyl-tRNA synthetase [Yersinia intermedia ATCC 29909] Length = 461 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 186/482 (38%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N++ +T++ + KD L P +PR Sbjct: 60 SLTYVRNVTDVDDKIIKRA------LENNESCEQLTTRMLAEMHKDFDALNLKRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I L + +I HAY A N +++F S P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIALTERLIARDHAYVASNGDVMFAVDSDPDYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWASPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDANATPAGGAEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A AL +ARE + + L AH+LG+ L Sbjct: 346 MDDDFNTPEAYSALFDIAREVNRLKTEDITAANGLAAELRKLAHVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+++R K ++ AD R QL G +LED G + T W+ Sbjct: 406 AQTNDDEVAKIEALIKQRNDARSSKDWALADSARDQLNELGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|114563765|ref|YP_751278.1| cysteinyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] gi|122299286|sp|Q07ZX5|SYC_SHEFN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114335058|gb|ABI72440.1| cysteinyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] Length = 460 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 253/480 (52%), Gaps = 45/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSISRDKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYIGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRAAEN------NESCESLTERLIAEMHQDFDALNMKRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++Q ++ HAY A N +++F +S P YG S + +D+ + G RV Sbjct: 114 ATLHIEEIIDMVQRLLDRDHAYVASNGDVLFSVASFPEYGQLSGQNLDQLQAGARVEIDN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLDNFFTIRDVL-------KHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + + SA Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARAALERLYTALKGLDLTVDAAPAEAFVAKFKSA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGI------EVCKEH 400 + +D NT A L ++ RE K D+ A +LG+ K Sbjct: 346 MDDDFNTPEAYSVLFEMVREINRLKTTDMAEASALGVSLKQLADVLGLISQTPEAFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R +L G LED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWPAADVARDRLNELGVELED-----GGPSGTTWRKK 460 >gi|261493400|ref|ZP_05989926.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496665|ref|ZP_05993045.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307868|gb|EEY09191.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311044|gb|EEY12221.1| cysteine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 469 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 188/479 (39%), Positives = 265/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 12 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYSGYN- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 71 -LRYVRNITDVDDKIIKRA------LENNETCDELVDRMIAEMHKDFDALNILRPDVEPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 124 ATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 183 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 184 IKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 243 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 244 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 295 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R L HYR +D+++ L A L + + A +A Sbjct: 296 AESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIGGEHYVEAFKTA 355 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L ++ARE K + L A +LG+ K Sbjct: 356 MDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGLLEQDPDAFLKGD 415 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 416 ANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTPN------GTIWRK 468 >gi|91793850|ref|YP_563501.1| cysteinyl-tRNA synthetase [Shewanella denitrificans OS217] gi|123356646|sp|Q12L98|SYC_SHEDO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91715852|gb|ABE55778.1| cysteinyl-tRNA synthetase [Shewanella denitrificans OS217] Length = 459 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 185/480 (38%), Positives = 260/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSMSREKQEFKPITPGKIGMYVCGITIYDLCHIGHGRTFVSFDMIVRYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + T + KD L + P +P+ Sbjct: 61 -VNFQRNITDVDDKIIKRAAEN------NESCDALTERLTAEMHKDFDALNMVRPDFEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P++I ++Q ++ GHAY A + +++F +S YG S + ID+ + G RV + Sbjct: 114 ATLHMPEIIEMVQRLLDRGHAYVAPDGDVLFSVASYKEYGRLSGQNIDQLQAGARVEIDH 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 NKQNPMDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNGKHLGTHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVL-------KHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + T+ SA Sbjct: 286 AQTVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAFKDLDLTVTAAPADEYVTKFKSA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + RE + L A +LGI K Sbjct: 346 MNDDFNTPEAYSVLFDMVREINRLKTTDMGAASALGVSMKQLADVLGIVSVDIETFFKGS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K +++AD R +L G +LED G+ T WK+K Sbjct: 406 GSDDEVAEIEALIVERNRARTEKDWAAADVARDRLNQLGVVLED------GENGTTWKKK 459 >gi|323705641|ref|ZP_08117215.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535118|gb|EGB24895.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 464 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 186/488 (38%), Positives = 269/488 (55%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF ++ + + MYVCGPTVY+F HIGNAR IVFD + R L Y + Sbjct: 1 MKIYNTLTRKKEEFVPLNDNVVNMYVCGPTVYNFIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I+R+ +E N + + + +++ KD L T PR Sbjct: 60 -VNYVQNFTDIDDKLIKRSHEE------NTTVKELADRYIEEYFKDADSLGIKRATFHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I ++ +I G AYE + + +DT+ +YG S + IDE K G R+ Sbjct: 113 ATENIKEIIEFVKKLIDKGFAYEKDGNVYYDTTKFKDYGKLSHKNIDELKAGARIEVNED 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK + EP W+SPWG+GRPGWHIECS MS+ +LGK DIH GG DLIFPH Sbjct: 173 KKNPTDFVLWKAAKEGEPYWDSPWGKGRPGWHIECSTMSTKFLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ E A W+H G+LN+ KMSKS NF T+ +++ + Sbjct: 233 HENEIAQSEAANDAE-FAKYWMHIGYLNINNEKMSKSKNNFFTVRDVIS-------QYDP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPA---- 350 V+R MLM+HYR PI+++ + +A+ + T + + + D Sbjct: 285 EVLRFFMLMSHYRNPINYSQDLIEQAKNGYLRLSNTVYNLQHLLDVAEDRQLSDEEKAYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI + ++ R+ N D +L +F + + Sbjct: 345 EKYEEYRRKFEEAMDDDFNTADAISVIFEMVRDINSNIDGNSPKELIKYILDVFLNLSSV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI K+ L + I++L+++R K K ++ AD IR +L+ +G +LED N Sbjct: 405 LGITYKKKEL---LDDEIKELIEKRQEARKAKNWAEADRIRDELKKQGIVLEDTPN---- 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 --GVRWKR 463 >gi|119945844|ref|YP_943524.1| cysteinyl-tRNA synthetase [Psychromonas ingrahamii 37] gi|119864448|gb|ABM03925.1| cysteinyl-tRNA synthetase [Psychromonas ingrahamii 37] Length = 461 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 173/482 (35%), Positives = 264/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F+ + P + MYVCG T+YD+ HIG+ R + FD + R LR+ Sbjct: 2 LKIYNSLTRQKEPFKPLIPGKVGMYVCGITIYDYCHIGHGRTFVAFDTVARYLRFSGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + Y+RNITD+DDKII+RA + N++ +TS+ T+ +D L L P +PR Sbjct: 60 SLNYIRNITDVDDKIIKRAAEN------NESCDQLTSRFTEAMHQDFDALFMLRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T+H+P++I +I+ +I GHAY A NN+++F S YG S + ++ + G+RV + Sbjct: 114 VTDHMPEVIEMIKKLIAKGHAYVAENNDVLFAVDSFKEYGQLSGQNLEMLRAGSRVEVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK + P EP W SPWG GRPGWHIECSAM+ +LG+VFDIHGGG DL FP Sbjct: 174 SKRNPLDFVLWKMAKPAEPFWTSPWGNGRPGWHIECSAMNHKHLGEVFDIHGGGSDLAFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS NF TI E+L + + Sbjct: 234 HHENEIAQSCCAHHG-QYVNTWMHSGMVQVDKVKMSKSLKNFFTIKEVL-------KFFD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----------KGIIDPAVL 352 + +R ++ HYR ++++ L +A L + + + + Sbjct: 286 SESVRYFLISGHYRSQLNYSEDNLKQARASLERLYNSVRDLTFSKDTPLDKTNLHYQQFI 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCK 398 A+ +D NT A+ L LA+E + + A++LG+ + + Sbjct: 346 KAMDDDFNTPGALAVLFDLAKEINRLKQSNIKQASLSAGLLVTLANVLGLLNQSAEQFLQ 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L+++R + K ++SAD R +L + +LED G T W+ Sbjct: 406 GDEKNEEVAMIEALIKQRNDARQNKDWASADSARDKLAALKIVLED------GPGGTTWR 459 Query: 459 QK 460 ++ Sbjct: 460 KQ 461 >gi|117617683|ref|YP_857264.1| cysteinyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559090|gb|ABK36038.1| cysteinyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 458 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 253/478 (52%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + +T++ D L + P +PR Sbjct: 61 -LNYVRNVTDVDDKIIKRAAE------TGVTCDDLTARLIGDMHADFDALGMVRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+Q+++ HAY A+ +++F S +YG S + +++ + G RV Sbjct: 114 ATQHIGEIIELVQSLLDKEHAYVADNGDVMFIVDSYADYGKLSGQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPLDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-------WPQTSTSKGIIDPA-VLSAL 355 A +R ++ HYR ++++ L +A L + P + + G A A+ Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPAAAAAGGDEQVARFKEAM 345 Query: 356 YNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEHL 401 +D NT A AL L RE + L +LGI K Sbjct: 346 DDDFNTPEAYSALFDLVREINRQKGEDMAVAAALGARLRELGAVLGILQQDPEAFLKGDE 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+ +R K +++AD R +L G +LED T W++ Sbjct: 406 ADEEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLEDS------AGKTSWRR 457 >gi|254360582|ref|ZP_04976731.1| cysteine--tRNA ligase [Mannheimia haemolytica PHL213] gi|153091122|gb|EDN73127.1| cysteine--tRNA ligase [Mannheimia haemolytica PHL213] Length = 458 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 188/478 (39%), Positives = 265/478 (55%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYSGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDELVDRMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I +GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNYWLHTGMLTIDKEKMSKSLGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------IDPAVLSAL 355 A +R L HYR +D+++ L A L + + A +A+ Sbjct: 286 AESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIGEHYVEAFKTAM 345 Query: 356 YNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEHL 401 +D NT A+ L ++ARE K + L A +LG+ K Sbjct: 346 DDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGLLEQDPDAFLKGDA 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K ++ AD +R +L++ +LED N T W++ Sbjct: 406 NDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTPN------GTIWRK 457 >gi|224825711|ref|ZP_03698815.1| cysteinyl-tRNA synthetase [Lutiella nitroferrum 2002] gi|224601935|gb|EEG08114.1| cysteinyl-tRNA synthetase [Lutiella nitroferrum 2002] Length = 457 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 189/477 (39%), Positives = 266/477 (55%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ I P MYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 2 LNLYNTLTRQKEVFKPITPGKASMYVCGMTVYDYCHLGHARMVVVFDMVARWLRATGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA + + I +T++ +D L + P +PR Sbjct: 61 -LTYVRNITDIDDKIIKRAAEN------GEPIQALTARFIDAMNEDFDALGVIHPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+P MI LI+ +I +G AY A N ++ + P YG S + +++ + G RV Sbjct: 114 ATEHVPGMIALIETLIANGRAYPAPNGDVYYAVREFPGYGKLSGKSLEDLRAGERVEVDV 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W SPWG GRPGWHIECS MS H+LG+ FDIHGGG DL FP Sbjct: 174 NKRDPFDFVLWKAAKPGEPSWPSPWGEGRPGWHIECSVMSEHHLGEHFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEGAHN-HDFVNYWLHNGFIRVDNEKMSKSLGNFFTIREVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-----------VL 352 A V+R +L HYR P++++ L +A+ L++ + D A Sbjct: 286 AEVVRFFILRAHYRSPLNYSDVHLDDAKQSLTRLYTALKNVTATDIAIDWEENDYARRFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGI--EVCKEHLN------ 402 A+ +D NTV A+ L LA E + + A +LG+ +E L Sbjct: 346 QAMDDDFNTVEAMAVLFDLAGEVNRGESAAQAGLLKALGAVLGLLQRAPQEFLQGGSTAA 405 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + AIE L+Q R K ++ +D IR +L +KG ILED G + T W++ Sbjct: 406 ELSADAIEALIQARRDARTAKNWAESDRIRDELAAKGVILED------GAQGTTWRR 456 >gi|163801179|ref|ZP_02195079.1| cysteinyl-tRNA synthetase [Vibrio sp. AND4] gi|159175528|gb|EDP60325.1| cysteinyl-tRNA synthetase [Vibrio sp. AND4] Length = 460 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 252/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPITAGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTDRLIGEMHVDFDSLNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L++ +I G AY A+ +++F+ YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIELVEKLIERGFAYVADNGDVMFEVRQFKEYGKLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ L +A L + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLNQARASLERLYTSLRGLDSNAAPAGGEEYVTRFTAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K +L + A ++GI Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKTENVEKASELGALMRELADVIGILHQDPEAFLKGD 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L++ R K +++AD R +L G +LED G T W++ Sbjct: 406 AGDDEEVAEIEALIKLRNDSRAAKDWANADMARDKLTEMGIVLED------GSEGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|319425887|gb|ADV53961.1| cysteinyl-tRNA synthetase [Shewanella putrefaciens 200] Length = 459 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ EF+ I+P I MYVCG T+YD HIG+ R + FD++ R LRY E Sbjct: 2 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + RNITD+DDKII+RA + N++ +T + + +D L L P +PR Sbjct: 61 -VNFQRNITDVDDKIIKRANEN------NESCEALTERLIGEMHRDFDALNMLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ ++ GHAY A + +++F +S P+YG S + +D+ + G RV Sbjct: 114 ATLHIAEIIDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 NKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-PYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR ++++ L +A L + + +A Sbjct: 286 AETVRYFLLSGHYRSQLNYSEDNLKQARSALERLYTAIKDVDLTVAAAPAEEFIAKFKAA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A L + R+ K L A +LG+ K Sbjct: 346 MDDDFNTPEAYSVLFDMVRDINRLKATDIAKASALAVAMKQLADVLGLLGQDPDAFFKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+ ER K + +AD R +L+ G +LED G T W++K Sbjct: 406 GSDDEVAEIEALIVERNRARSEKDWVAADVARNRLDILGVVLED------GPSGTTWRKK 459 >gi|261820651|ref|YP_003258757.1| cysteinyl-tRNA synthetase [Pectobacterium wasabiae WPP163] gi|261604664|gb|ACX87150.1| cysteinyl-tRNA synthetase [Pectobacterium wasabiae WPP163] Length = 461 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 174/482 (36%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA I + +T++ + D L + P +PR Sbjct: 60 SLKYVRNVTDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNIVHPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A N +++F + P YG+ SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLIARRHAYVASNGDVMFSVDTAPGYGALSRQDLDQLQAGARVEITA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSRCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 +R ++ HYR ++++ L +A L + + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALERLYIALRGTDLSVAAHGGDEFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDVQAANQLASALRKLSGVLGLLEQDPEQFLQNG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVDNDEVKEIEALIQQRKDARAAKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|303240982|ref|ZP_07327492.1| cysteinyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] gi|302591407|gb|EFL61145.1| cysteinyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] Length = 467 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 177/490 (36%), Positives = 256/490 (52%), Gaps = 59/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF I+ +RMY CGPTVY++ HIGNARP I+FD + R L Y + Sbjct: 1 MKIYNTLTRKKEEFVPINEKEVRMYSCGPTVYNYFHIGNARPFIIFDTVRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA +E + + + +++ D L T P+ Sbjct: 60 -VKFVQNFTDIDDKMIKRANEE------GITVKDLADRFIKEYFIDAKGLGIDEATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I LI+ + +G AY N ++ F YG S +++ +G+ V Sbjct: 113 ATENIDAIIDLIKKLEENGFAYNVNGDVYFSIGKFKEYGKLSHHSLEDLAIGSSVNVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF +WK P EP W+SPWG+GRPGWHIECSAM++ YLG+ DIH GG DLIFPH Sbjct: 173 KQNPMDFAVWKAQKPGEPAWDSPWGKGRPGWHIECSAMANKYLGETIDIHSGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNGF+N+ KMSKS GNF T+ +++E + Sbjct: 233 HENEIAQSEAASG-KPFAKYWMHNGFINVNNEKMSKSAGNFFTVRDIVE-------KFDY 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPA---- 350 VIR ML HYR PI+F+ L +A+ L + + + +K + D Sbjct: 285 EVIRFFMLSAHYRSPINFSADLLEQAQNGLERIYNCLDNLVYLGEHAQAKEMSDEEKSLQ 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLL------------PIFNASA 389 + + +DLNT AI A+ + +E N + Sbjct: 345 SRLLEIKGKFIEGMDDDLNTADAIAAIFDIVKEVNSNITASSNSSKEIIDFSHSLIRELG 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LGI ++ N + +E L+ +R K K + +D IR +L+ G +LED Sbjct: 405 GVLGIGQKQKENN--LDSEVEALISQRQQARKEKNWKLSDEIRDKLKDMGIVLEDT---- 458 Query: 450 NGQRMTRWKQ 459 + +WK+ Sbjct: 459 --PQGVKWKR 466 >gi|237803609|ref|ZP_04591194.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025591|gb|EGI05647.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 460 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDTLTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALRGLPVAAPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVPAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|50122074|ref|YP_051241.1| cysteinyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043] gi|61216191|sp|Q6D2E4|SYC_ERWCT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49612600|emb|CAG76050.1| cysteinyl-RNA synthetase [Pectobacterium atrosepticum SCRI1043] Length = 461 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 177/482 (36%), Positives = 250/482 (51%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHADQVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA I + +T++ + D L L P +PR Sbjct: 60 SLKYVRNITDIDDKIIKRA------IENGETSDQLTTRMIAEMHADFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I +++ +I HAY A N +++F + YG SR+ +D+ + G RV Sbjct: 114 ATHHIADIIEMVETLITRRHAYVASNGDVMFSVDTASGYGVLSRQDLDQLRAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPHWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSCCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------GIIDPAVLSA 354 +R ++ HYR ++++ L +A L + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARAALERLYIALRGTDPSVEAHGGDEFEARFHDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDVQAANQLASTLRKLSGVLGLLEQDPEQFLQNG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +N + IE L+Q+R K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQVNDDEVKEIEALIQQRKDARATKDWALADQARDRLNEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|332982044|ref|YP_004463485.1| cysteinyl-tRNA synthetase [Mahella australiensis 50-1 BON] gi|332699722|gb|AEE96663.1| cysteinyl-tRNA synthetase [Mahella australiensis 50-1 BON] Length = 467 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 180/488 (36%), Positives = 262/488 (53%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F+ ++ + + MYVCGPTVYD+ HIGNARP++VFD L R L Y + Sbjct: 2 VRLYNTLTRKQEIFEPLNDNTVTMYVCGPTVYDYFHIGNARPLVVFDTLRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I+RA QE + + + Q++ D L PR Sbjct: 61 -VKYVQNFTDIDDKMIKRANQE------GITVKELGDRFIQEYFVDAKGLNIRPADVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI MI I+ +I G AY + + FDTS P YG S + +E + G RV Sbjct: 114 ATEHITDMIEFIKKLIDKGVAYVVDGNVYFDTSKFPQYGKLSHQDFNEIEAGARVEVNES 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK P EP W+SPWG GRPGWH+ECS MS YLG DIHGGG DLIFPH Sbjct: 174 KRNPMDFVLWKAQKPGEPAWDSPWGMGRPGWHMECSVMSMKYLGDTIDIHGGGQDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++G+KMSKS GNF T+ ++ + + Sbjct: 234 HENEIAQSESLTG-KPLARFWLHNGYINVDGQKMSKSLGNFFTVRDI-------SKEYDL 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------------- 348 +R+ ML++HYR PI+F+ Q L +A+ L++ I Sbjct: 286 ETVRIFMLLSHYRSPINFSHQLLEQAKNALARLYNVKFRLEDIKNSSDISAVSEQERAFI 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTK----------NHDLLPIFNASAHI 391 + A+ +D+NT SA+ + LA++ + + + Sbjct: 346 NDMPRYRQKFIEAMDDDMNTASAMGVIFDLAKDVNILMADGASAEFASEASDMLKELTGV 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 +G+ K+ + IE+++Q+R + +++AD IR +L++ G +LED Sbjct: 406 MGLLY-KDSACSQLDNEIEQMIQKRQQARANRDWATADRIRDELKAMGIVLEDT------ 458 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 459 PQGVRWKR 466 >gi|167855009|ref|ZP_02477783.1| cysteinyl-tRNA synthetase [Haemophilus parasuis 29755] gi|167853857|gb|EDS25097.1| cysteinyl-tRNA synthetase [Haemophilus parasuis 29755] Length = 459 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 180/479 (37%), Positives = 256/479 (53%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I P ++ MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPIYPDHVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+R+ + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRS------LENNETCDQLVDRMIIEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ ++ GHAY A + +++F+ S YG+ SR+ +++ + G RV K Sbjct: 114 ATQHIPEIIAIVEKLLAKGHAYVAEDGDVMFNVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W+SPWG+GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKENEPSWDSPWGKGRPGWHIECSAMNSKELGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L + KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHGDD-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDILN-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 +R L YR +D++ + + A L + A + Sbjct: 286 CESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCDWNVELAENDQYVTAFKES 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L +LARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFELAREINKLKAENQVEANKLAARLKQLAGVLGLLEQDPETFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+++R K ++ AD R +L + G +LED G T W++ Sbjct: 406 ANNDEVAEIEALIKQRNEARASKNWAVADEARNKLTAMGIVLED------GANGTTWRK 458 >gi|237747642|ref|ZP_04578122.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gi|229379004|gb|EEO29095.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Length = 462 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 193/480 (40%), Positives = 271/480 (56%), Gaps = 45/480 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++IYN+L R F I+P +RMYVCG T+YD+ HIG+AR M+ FDV+YR L+ E Sbjct: 3 SLQIYNSLTRSKEVFTPIEPGKVRMYVCGMTIYDYCHIGHARMMMSFDVVYRWLKATGYE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKII RA + + IS +TS+ TQ +DT L L P H+P Sbjct: 63 --VTYVRNITDIDDKIINRAAEN------GEPISSLTSRFTQYMHEDTCALGILPPDHEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT ++P+M+ LI + +G AY++ + ++ + YG S + +D+ + G RV Sbjct: 115 RATEYVPEMLELIGKLEKNGLAYQSTDGDVNYSVRDFEGYGKLSGKSLDDLRAGERVDIN 174 Query: 183 YHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK + P EP W S WG GRPGWHIECSAMSS LG+ FDIHGGG D Sbjct: 175 TGKRDPLDFVLWKSAKPTEPEEAKWPSRWGTGRPGWHIECSAMSSKLLGEHFDIHGGGAD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 235 LQFPHHENEIAQSEGASH-HPFVNYWMHNGFVRVDNEKMSKSLGNFFTIRDVL------- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------- 350 +S+ A V+R ++ +HYR P++++ L +A+ L++ + D A Sbjct: 287 KSYDAEVLRFFIIRSHYRSPLNYSDAHLDDAKNALTRLYTALKDVDVKDQAVDWDSEYAK 346 Query: 351 -VLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGI--------EVCKE 399 SA+ +D NT A+ L +LA E + H +L A A +LG+ Sbjct: 347 RFASAMNDDFNTPEAVAVLFELANEVNRTHLAELGSQLKALAGVLGLLERDPRQFLQGDG 406 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +++ IE +Q R+ K K F+ AD IR +L KG +LED +T W++ Sbjct: 407 AVDEGEEKWIESQIQARIDAKKAKNFAEADKIRSELLEKGIVLEDKPGG-----LTEWRR 461 >gi|268591223|ref|ZP_06125444.1| cysteine--tRNA ligase [Providencia rettgeri DSM 1131] gi|291313193|gb|EFE53646.1| cysteine--tRNA ligase [Providencia rettgeri DSM 1131] Length = 462 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 183/483 (37%), Positives = 260/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LQIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + N+++ +T++ + KD L L P +PR Sbjct: 61 -LNYVRNVTDIDDKIIKRAAEN------NESVEALTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L Q++I GHAY A N +++F+ + PNYG SR+ +++ + G RV Sbjct: 114 ATRHIGEIIELTQSLIERGHAYVAANGDVMFEVKTDPNYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKTLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLE-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARSALERMYTALRGTDKSAVPAGGDEFKARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L + RE + + + A +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMVREVNRLKSEDMSAANGMAAQLRELASVLGLLEQDPEVFLKGG 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + IE L+Q+RL K K ++ AD R +L + G +LED + T W Sbjct: 406 AQTEDDAEVAKIEALIQQRLDARKNKDWAQADAARDELTAMGIVLEDS------AQGTIW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|78485268|ref|YP_391193.1| cysteinyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] gi|109894958|sp|Q31H54|SYC_THICR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78363554|gb|ABB41519.1| cysteinyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] Length = 456 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 261/475 (54%), Gaps = 42/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F I P+ + +YVCG TVYD+ H+G+AR M+VFD + R LR + Sbjct: 3 LKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + ++I +TS+ +D L L P +P+ Sbjct: 62 -VTYVRNITDIDDKIIQRALENK------ESIQSLTSRFIDAMHEDEKALNVLRPDMEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ ++ +I +I AY A N ++ F + +YG S + I+E G+RV Sbjct: 115 ATEYMDEIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINS 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK S EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGGLDL FP Sbjct: 175 VKKDPLDFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H GF+ ++ KMSKS GNF TI E+L + + Sbjct: 235 HHENEIAQSECATGEH-YVNSWMHCGFVRIDDEKMSKSLGNFFTIREVL-------KQYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 VIR +L +HYR P++++ + L A+ + + Q ++ ++ ++A Sbjct: 287 PEVIRYFLLASHYRSPVNYSEENLDVAKASVGRLYSALELVPADQAEPAESKLEAEFMAA 346 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVC--------KEHLNKN 404 + +D NT A+ L +LA+E K L + A+ +G+ + + Sbjct: 347 MNDDFNTPQAMAVLFELAKEVNKQKSPGLAALLKKLANQIGLLEQTAESFFKSQPSDSDL 406 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+ ER K K FS +D IR +L ++G L D T W++ Sbjct: 407 TDEMIEALIVERAEARKAKDFSRSDEIRDELLAQGIELLDS------AEGTSWRK 455 >gi|327187990|gb|EGE55220.1| cysteinyl-tRNA synthetase protein [Rhizobium etli CNPAF512] Length = 463 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 267/459 (58%), Positives = 343/459 (74%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++K+YNTL R+ + F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 4 TPELKLYNTLTREKSVFAPIDPKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 GE VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P Sbjct: 64 GESHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPNV 123 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PRAT++I +MI +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G RV Sbjct: 124 EPRATDNIEEMIEIIEKLISNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARVAV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HKKNP DF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLI Sbjct: 184 DAHKKNPGDFVLWKLSSHNEPGWDSPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLI 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR Sbjct: 244 FPHHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRK 303 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNT 361 WP V+RLAMLMTHYREPIDF+++RL EAE LL+KWP T D AV++AL +DLNT Sbjct: 304 WPGAVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPATEPGDASPDEAVMNALADDLNT 363 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLK 421 V+A+QALH LA+ + + + F A+A +LG+ K +++ ++ A++ LV RL +LK Sbjct: 364 VAAVQALHALAQAAHTDAAIGATFAATAFLLGVLPKKAEIDEAVAAAVDALVAMRLEMLK 423 Query: 422 MKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F+ AD IR QL +KG L+D K+ G+R+T W+ K Sbjct: 424 AKNFAEADKIRDQLTTKGIQLKDGKDAATGERVTTWEVK 462 >gi|330830124|ref|YP_004393076.1| Cysteinyl-tRNA synthetase [Aeromonas veronii B565] gi|328805260|gb|AEB50459.1| Cysteinyl-tRNA synthetase [Aeromonas veronii B565] Length = 458 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 250/478 (52%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYAGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + +T + D L + P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRAAETRV------TCDELTERLIGDMHADFDALGMVRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L+Q+++ HAY A+ +++F S +YG S + +++ + G RV Sbjct: 114 ATQHIEEIIELVQSLLEKEHAYVADNGDVMFIVESYADYGKLSGQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 A +R ++ HYR ++++ L +A L + + A A+ Sbjct: 286 AETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFKEAM 345 Query: 356 YNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEHL 401 +D NT A AL L RE + L +LGI K Sbjct: 346 DDDFNTPEAYSALFDLVREINRQKAEDMVVAAALGARLRELGAVLGILQQDPEAFLKGDE 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+ ER K +++AD R +L G +LED T W++ Sbjct: 406 ADEEVAEIERLIAERNQARADKNWAAADAARNRLTEMGIVLEDS------AGKTSWRR 457 >gi|213968819|ref|ZP_03396960.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] gi|213926422|gb|EEB59976.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] Length = 466 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 8 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 67 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 119 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 120 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 179 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 180 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 239 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF T+ ++LE + Sbjct: 240 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTLRDVLE-------KYH 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ +PA +A+ Sbjct: 292 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAAEPAGGEAFVERFTTAM 351 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 352 NDDFGTPEACAVLFEMVREINRLRETDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 411 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 412 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 463 >gi|298486254|ref|ZP_07004317.1| Cysteinyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159261|gb|EFI00319.1| Cysteinyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 460 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVARWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|212223750|ref|YP_002306986.1| cysteinyl-tRNA synthetase [Thermococcus onnurineus NA1] gi|229558797|sp|B6YUQ3|SYC_THEON RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|212008707|gb|ACJ16089.1| cysteinyl-tRNA synthetase [Thermococcus onnurineus NA1] Length = 476 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 182/493 (36%), Positives = 250/493 (50%), Gaps = 60/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL ++ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 IRVYNTLTKQKEEFRPLREGEVRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEHRGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RA + + + K + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIRRANE------TGEDPKELAEKFLRYFLEDMKALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I ++ + G+AYE N+ + F+ +YG S K++E G RV Sbjct: 115 VTEHIQDIIDFVRKLQEKGYAYEGNDGVYFEVRKFKDYGKLSGIKLEELVKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP WESPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIFPH Sbjct: 175 KKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E W+H GF+ + G KMSKS GNF+TI ELL + + Sbjct: 235 HENEIAQSEACTGHE-WVRYWLHTGFVMVSGEKMSKSLGNFVTIRELL-------QKYSP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 VIR +L HYR P+D+T + + A+ L + T + Sbjct: 287 EVIRFFVLQKHYRSPLDYTEEGIQHAKNNLERLYNTLENIRVAMEKADVAFRWDEEEFEL 346 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNAS 388 A+ +D NT A++A+ +++ + L F Sbjct: 347 YETVREARKKFYDAMDDDFNTAEALKAVFEVSNAVNRYLTKVEKPKESVLRKALEFFKIV 406 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + + G+ + KE + IE LV R L K + F+ AD IR +L++ G LED Sbjct: 407 SEVFGLFEDYFKEQKAGDEEALIELLVSVRAELRKQRNFTLADKIRDELKALGIQLEDT- 465 Query: 447 NPDNGQRMTRWKQ 459 + T WK+ Sbjct: 466 -----PQGTIWKR 473 >gi|257483826|ref|ZP_05637867.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625911|ref|ZP_06458865.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651301|ref|ZP_06482644.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868387|gb|EGH03096.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890007|gb|EGH22668.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020] gi|330985629|gb|EGH83732.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 460 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|205372089|ref|ZP_03224906.1| cysteinyl-tRNA synthetase [Bacillus coahuilensis m4-4] Length = 467 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 248/489 (50%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IV+D + R L Y Sbjct: 1 MSIQLYNTLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V N TD+DDK+I+ A + + + + I + + +DT L C Sbjct: 61 --AVNFVSNFTDVDDKLIKAANE------LGEDVPTIAERFIDAYFEDTAALGCSKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +I +I I ++ G+AYE+ ++ + T YG S + I++ + G R+ Sbjct: 113 PRVTENIDIIIEFISALMDKGYAYESQGDVYYRTKKFEGYGKLSHQPIEDLQSGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + E W SP+G+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDPLDFVLWKAAKEGEIYWSSPFGKGRPGWHIECSAMVRKYLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KPFAKYWMHNGYINIDNEKMSKSLGNFVLVHDII-------KET 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 V+R ML HYR PI+++ + + L + T Sbjct: 285 DPQVLRFFMLSVHYRHPINYSADLVENTKTALDRLRTTYQNITYRKESSVNLGEGTEKWV 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAH 390 + + A+ +D NT +AI L L+++ + F Sbjct: 345 GQIAELKKQFIQAMDDDFNTANAISVLFDLSKQGNYYLMEENTEVRVLDEFTQTFEELFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+++ E + + IEKL++ER+ K F +D IR +L+ +LED Sbjct: 405 VLGLKLSGEA--ELLDEEIEKLIEERIQARKNCDFKRSDEIRDKLKEMNIVLEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|219870367|ref|YP_002474742.1| cysteinyl-tRNA synthetase [Haemophilus parasuis SH0165] gi|254781682|sp|B8F392|SYC_HAEPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219690571|gb|ACL31794.1| cysteinyl-tRNA synthetase [Haemophilus parasuis SH0165] Length = 459 Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 179/479 (37%), Positives = 255/479 (53%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I P ++ MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPIHPDHVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+R+ + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRS------LENNETCDQLVDRMIIEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ ++ GHAY A + +++F+ S YG+ SR+ +++ + G RV K Sbjct: 114 ATQHIPEIIAIVEKLLAKGHAYVAEDGDVMFNVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W+SPWG+GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKENEPSWDSPWGKGRPGWHIECSAMNSKELGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H G L + KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHGDD-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDILN-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------SKGIIDPAVLSA 354 +R L YR +D++ + + A L + A + Sbjct: 286 CESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCDWNVELVENDQYVTAFKES 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L +LARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFELAREVNKLKAENQAEANKLAARLKQLAGVLGLLEQDPETFLQGD 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE +++R K ++ AD R +L + G +LED G T W++ Sbjct: 406 ANNDEVAEIEAFIKQRNEARASKNWAVADEARNKLTAMGIVLED------GANGTTWRR 458 >gi|225181302|ref|ZP_03734747.1| cysteinyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] gi|225168082|gb|EEG76888.1| cysteinyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] Length = 469 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 178/493 (36%), Positives = 264/493 (53%), Gaps = 59/493 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++NTL RK EF ++ + +Y CGPTVYD+ HIGNAR IVFDV+ R LR+ Sbjct: 1 MSVRVFNTLTRKKEEFVPVEGKKVGIYACGPTVYDYFHIGNARIFIVFDVIRRYLRWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+V+N TDIDDK+I+RA + + + + + + + +D L Sbjct: 61 D--VTFVQNFTDIDDKMIKRANE------LGITVPELAERYIEAYFEDVEALGVEPADEH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +M+ LIQ + G AYE + ++ F T + NYG S + +DE + G RV Sbjct: 113 PKATEHIEEMVELIQKLEAKGMAYEVDGDVYFHTPAFDNYGELSHQPLDELESGARVDVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF+LWK+ P EP WESPWG+GRPGWHIECS MSS YLG DIH GG DLIF Sbjct: 173 ERKKHPLDFVLWKKQKPGEPAWESPWGKGRPGWHIECSVMSSKYLGDTLDIHAGGPDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS A + A W+H G+LN+ KMSKS GNF+T+ E+ + Sbjct: 233 PHHENEKAQSEGATG-QPFAKYWLHAGYLNINQEKMSKSLGNFMTVREIR-------KQI 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPA--- 350 ++R ML HYR PI+++ L +A+ L + + +G D A Sbjct: 285 DPQIVRFFMLSAHYRNPINYSPDLLEQAKSGLDRLNNVVYNLRDLLEKLPEGQGDSADAT 344 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + A+ +D NT + L +ARE+ L +F Sbjct: 345 ERLAALEAHRGRFVEAMDDDFNTADGLAVLFDVARETNAYLKNAQVSRQVVEKTLALFEE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG ++ ++++ + +++++R K K +++AD IR QL++ G +LED Sbjct: 405 LGSVLG--FFQKQDDEDLDATVNEMIEKRQAARKEKDWATADAIRDQLQAMGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQK 460 + RW++K Sbjct: 461 ----PQGIRWRRK 469 >gi|300721928|ref|YP_003711208.1| cysteine tRNA synthetase [Xenorhabdus nematophila ATCC 19061] gi|297628425|emb|CBJ88990.1| cysteine tRNA synthetase [Xenorhabdus nematophila ATCC 19061] Length = 460 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 184/481 (38%), Positives = 258/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHEGKVGMYVCGITIYDLCHIGHGRTFVAFDAIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA I N++ +T++ + D L L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRA------IENNESCDDLTTRMLAEMHNDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIEITETLIERGHAYVAANGDVMFSIDTNPDYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKQGEPSWESPWGTGRPGWHIECSAMNGKTLGHHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLG-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTSLERLYTSLRGTDKSAQPAGGAGFEARFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLN--- 402 + +D NT A L +ARE + + L A ILG +E EH Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKAEDIVAANGLAAELRKLAGILGLLEQEPEHFLQGG 405 Query: 403 ---KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+++R K K+++ AD R QL G LED G + T W++ Sbjct: 406 AQVDDDVAQIEALIKQRNDARKNKEWALADAARNQLNELGIELED------GPQGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|293392469|ref|ZP_06636789.1| cysteine-tRNA ligase [Serratia odorifera DSM 4582] gi|291424871|gb|EFE98080.1| cysteine-tRNA ligase [Serratia odorifera DSM 4582] Length = 461 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII RA + + +T + + D L P +PR Sbjct: 61 -LNYVRNVTDVDDKIIRRAAEN------GETCDQLTGRMLAEMHADFDALLIERPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L + +I GHAY A N +++F S +YG SR+ +D+ + G RV Sbjct: 114 ATQHIAEIIELTERLIARGHAYVASNGDVMFAIDSDADYGLLSRQDLDQLQAGARVEVDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWQSPWGAGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLG-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDPLATPDGGAEFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-------- 398 + +D NT A AL LARE + + + A +LG+ + Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKNEDMAAANAMAAELRKLAKVLGLLQQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIKQRNDARKSKDWALADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|300715706|ref|YP_003740509.1| Cysteinyl-tRNA synthetase [Erwinia billingiae Eb661] gi|299061542|emb|CAX58656.1| Cysteinyl-tRNA synthetase [Erwinia billingiae Eb661] Length = 462 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 181/483 (37%), Positives = 258/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + + ++T++ + KD L L P +PR Sbjct: 60 SLNYVRNITDIDDKIIKRANEN------GETVEVLTNRMIGEMHKDFAALNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++ +I HAY A N +++F S P YG SR+ +++ + G RV + Sbjct: 114 ATRHISEIIEIVSKLIDREHAYVASNGDVMFSVPSDPQYGQLSRQDLEQLQAGARVEVEQ 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKANEPSWSSPWGEGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 PHHENEIAQSTCAHEG-PYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVL-------QHF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLS 353 A +R ++ HYR +++ L +A L + + + Sbjct: 286 DAETVRCFLMSGHYRSQLNYGEDNLKQARSALERLYTAIRNTDSSAEPAGGEVFETRFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL---- 401 A+ +D NT A AL +ARE + + L A +LG+ L Sbjct: 346 AMDDDFNTPEAYSALFDMAREVNRLKAEDMSAANGLAAKLRQLAGVLGLLEQDPELFLQN 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 N + IE L+++RL + K ++ AD R +L + G +LED G + T W Sbjct: 406 GAQSNDDEVAEIEALIRQRLDARREKNWAQADMARDKLVAMGIVLED------GPQGTSW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|91774855|ref|YP_544611.1| cysteinyl-tRNA synthetase [Methylobacillus flagellatus KT] gi|122985612|sp|Q1H417|SYC_METFK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91708842|gb|ABE48770.1| cysteinyl-tRNA synthetase [Methylobacillus flagellatus KT] Length = 455 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 195/475 (41%), Positives = 265/475 (55%), Gaps = 42/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R F I P + MYVCG TVYD+ H+G+AR M+VFD++ R LR E Sbjct: 2 LKIYNTLARAKQTFSPIIPGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRSSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I+ +T + +D RL P +PR Sbjct: 61 -VTYVRNITDIDDKIIARANEN------GETINALTDRFIAAMNEDAARLGVWRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I +MI +I +I HAY A+ ++ + SS +YG S + +++ + G RV Sbjct: 114 ATDYIHEMIAMIVALIEKHHAYAADNGDVYYAVSSFASYGKLSGKSLEDLRAGERVEVDA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HK++P DF+LWK + P EP W+SPWG GRPGWHIECSAM + +LG FDIHGGG DL FP Sbjct: 174 HKRDPMDFVLWKAAKPGEPSWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEGAHGC-TFVNYWMHNGFIRVDDEKMSKSLGNFFTIREVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVLS 353 A V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 286 AEVVRFFILRAHYRSPLNYSSHHLDDAKQALTRLYNTLRGRELPQLDIDWRQPEAERFKQ 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGI------EVCKEHLNKNI 405 AL +D NT A L +LA E+ + + A A LG+ E K + Sbjct: 346 ALDDDFNTPEAFAVLFELASEANRTGSAVQAALLKALAGQLGLLQRDPDEFLKGEAVAGL 405 Query: 406 S-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 S IE+L+ ERL K K F+ AD IR L ++G ILED + T W++ Sbjct: 406 SPDEIERLIAERLAARKCKNFAEADRIRDALTAQGIILEDT------PQGTSWRR 454 >gi|28870897|ref|NP_793516.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|301384135|ref|ZP_07232553.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13] gi|302059502|ref|ZP_07251043.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40] gi|302134322|ref|ZP_07260312.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999386|sp|Q87YQ2|SYC_PSESM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28854146|gb|AAO57211.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|331018326|gb|EGH98382.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 460 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF T+ ++LE + Sbjct: 234 HHENEIAQSEAATG-KPYANAWLHCGMIRINGEKMSKSLNNFFTLRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAAEPAGGEAFVERFTTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRETDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 QGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|192290599|ref|YP_001991204.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] gi|229558783|sp|B3QCS4|SYC_RHOPT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|192284348|gb|ACF00729.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] Length = 491 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 232/489 (47%), Positives = 308/489 (62%), Gaps = 34/489 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL R F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTLTRDKRPFTPIDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT + Sbjct: 61 EAHVKYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKM 175 PRAT HI +M +I+ ++ G AY + ++F S++ P YGS + R +DE Sbjct: 121 PRATEHIGEMRSIIEKLVAGGFAYVEQDHVLFSPSAMNAANGVLPRYGSLANRSLDEMIA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFD 232 G RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATPGRPGWHIECSAMSWKHLGETFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG+DL+FPHHENE+AQSCCA ++ A W+HNGFL +EG KMSKS GNFITI ELL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTKRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELL 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----SKGII 347 T KFGGRSW +RLAML THYR+PID+TV L EA+ ++K+ +T + Sbjct: 301 ATNKFGGRSWDGATLRLAMLKTHYRQPIDWTVDALEEAQKRVAKYRRTLERFRGGKNVEV 360 Query: 348 DPAVLSALYNDLNTVSAIQALHKLAREST---------------KNHDLLPIFNASAHIL 392 V+SAL +DLNT +AI L L R + N AS +L Sbjct: 361 PHGVVSALSDDLNTHAAITELDALNRRANGVTHEGPTSEADALAANAIAADELRASLRLL 420 Query: 393 GIEVCKE---HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 GI V E +N+ I++L+ R K + +D IR +L + G +L+D K+ D Sbjct: 421 GISVASERSGAVNQIFDQNIQRLIAVRTAARANKDWKESDRIRDELAAMGVVLKDGKDAD 480 Query: 450 NGQRMTRWK 458 G+ +T W+ Sbjct: 481 -GKPVTTWE 488 >gi|85713337|ref|ZP_01044354.1| cysteinyl-tRNA synthetase [Idiomarina baltica OS145] gi|85692839|gb|EAQ30820.1| cysteinyl-tRNA synthetase [Idiomarina baltica OS145] Length = 460 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 173/479 (36%), Positives = 259/479 (54%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F + + MYVCG T YD HIG+AR + FDV+ R LR + Sbjct: 3 LTLFNTLTREKETFTPREAGRVGMYVCGVTTYDLCHIGHARTYVAFDVVVRYLRKIGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII+RA + + +T + + +D L L P +PR Sbjct: 62 -VTYVRNITDLDDKIIKRAAEN------GEPFDALTQRYIDEMHRDFAALNLLEPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ +I +I++++ G+AY+A+ +++FD S+ +YG SR+ +++ + G RV + Sbjct: 115 VTQHMDDIIRMIESLVTQGYAYQADNGDVLFDVSTFDDYGRLSRQNLEQLQAGARVDVEA 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W+SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DL FP Sbjct: 175 SKLDPLDFVLWKKAKAGEPSWDSPWGEGRPGWHIECSAMNKAHLGETFDIHGGGSDLTFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA++ N W+H+G + ++ KMSKS GNF TI ++L ++ Sbjct: 235 HHENEIAQSCCANQTN-YVNYWMHSGMVQVDDVKMSKSLGNFFTIRDVLN-------AYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------AVLS 353 A +R +L +HYR +++T L +A L + P Sbjct: 287 AETVRYFLLSSHYRSQLNYTQDNLEQAHAALERLYTALRGLTPEQPDENLRLPYWNQFTD 346 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI-----EVCKEH 400 A+ +D N A+ L +L RE K D L + A +LG+ E + Sbjct: 347 AMNDDFNAPEAMSVLFELVREINKARDNDAERAAQLAHVLVELADVLGLLQQSPESFLQG 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+ +R K +++AD R +L G +LED G T+W++ Sbjct: 407 GADDEVALIEALIAQRNKARAEKDWAAADEARDRLTEMGIVLED------GANGTQWRR 459 >gi|85058683|ref|YP_454385.1| cysteinyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans'] gi|109894945|sp|Q2NV45|SYC_SODGM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|84779203|dbj|BAE73980.1| cysteinyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'] Length = 457 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 178/477 (37%), Positives = 255/477 (53%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKIFNTLTRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDVVTRYLRYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDI+DKII RA + + +T + + D +L L P +PR Sbjct: 61 -VNYVRNITDIEDKIIRRAAEN------GETFHQLTERMISEMHSDFDQLNILRPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I +I L+ +I HAY A N +++F S +YG SR+ +++ + G RV Sbjct: 114 ATHYIDAIIELVGQLIDRDHAYVAANGDVMFAVDSDSDYGLLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DLIFP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNGRQLGHHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N+W+H G + ++ KMSKS GNF T+ ++L R + Sbjct: 234 HHENEIAQSTCAHDG-PYVNVWMHAGMVMVDREKMSKSLGNFFTVRDVL-------RYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + ++A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYIALRGTDATAVPAGGDHFVAQFIAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCK-----EHLN 402 + +D NT A L +ARE + + A +LG+ + + Sbjct: 346 MDDDFNTPKAYSVLFDIAREVNRLKSEQPAAQGMAATLRQLAGVLGLLEQEPAAFLQQGA 405 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ IE L+Q+R K ++++ AD R +L + G +LED G + T W++ Sbjct: 406 AEDNVMIEALIQQRNDARKARQWALADEARDKLTALGIVLED------GPQGTTWRR 456 >gi|229591304|ref|YP_002873423.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens SBW25] gi|259511840|sp|C3JYD3|SYC_PSEFS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229363170|emb|CAY50215.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens SBW25] Length = 462 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 257/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFDALTERMIAAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGTKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + PA + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPSVAPAGGEAFVARFTEVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLDAAAGLAARLKELASVLGVLQMKPEDFLQAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + ++ L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGRVDAAEVDALIQARLAARANKDWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|167036780|ref|YP_001664358.1| cysteinyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039500|ref|YP_001662485.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|256752501|ref|ZP_05493358.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|300915250|ref|ZP_07132565.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307725174|ref|YP_003904925.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|320115202|ref|YP_004185361.1| cysteinyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|229558799|sp|B0KCH9|SYC_THEP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558800|sp|B0K5F6|SYC_THEPX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166853740|gb|ABY92149.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|166855614|gb|ABY94022.1| cysteinyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748636|gb|EEU61683.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|300888974|gb|EFK84121.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307582235|gb|ADN55634.1| cysteinyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|319928293|gb|ADV78978.1| cysteinyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 466 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 186/488 (38%), Positives = 257/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF+ ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y + Sbjct: 1 MKLYNTLSRTKEEFEPLNDKIVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K +++ D L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKEVAEKYIEEYFIDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL+FPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSEAAYG-QPFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 V+RL MLM HYR PI+F++ + +A+ + + + Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLMEQAKSAYERLLNAVANLKHLLTVCKDRELNEEEKRIK 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++++ + N +L IF + I Sbjct: 345 EKFEEYKKEFEDAMDDDFNTADAISVLFEMSKTANTNISGNSSKKLVEYILDIFLKLSEI 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + + I L++ER K K + AD IR +L KG ILED Sbjct: 405 LGLSY-RGVETELNDEEILALIEERQKARKEKNWKLADEIRDRLREKGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PEGVRWKR 465 >gi|310826702|ref|YP_003959059.1| cysteinyl-tRNA synthetase [Eubacterium limosum KIST612] gi|308738436|gb|ADO36096.1| cysteinyl-tRNA synthetase [Eubacterium limosum KIST612] Length = 465 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 179/488 (36%), Positives = 261/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K F I+ +RMY CGPTVY++ HIGNARP IVFDVL R L Y + Sbjct: 1 MKLYNTLTQKKEAFVPIEEGKVRMYSCGPTVYNYFHIGNARPFIVFDVLRRFLEYIGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII R+ +E + + K ++ KD L PR Sbjct: 60 -VKFVQNFTDVDDKIINRSIEE------GITAAEVADKYIAEYFKDADALGIRRADVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++H+P++I +I+ + G AY + + + +YG S++ ID+ K G R+ Sbjct: 113 VSDHMPEIIEMIKELEARGLAYNVDGNVYYQVDHFHDYGKLSKQSIDDLKSGARIDVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK+ EP WESPWG+GRPGWHIECSAMS +LG+ DIHGGG DLIFPH Sbjct: 173 KRSPLDFALWKKKKDGEPYWESPWGQGRPGWHIECSAMSRKHLGESIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQSEGSCGCK-FANYWVHNGYININNEKMSKSKGNFFTVRDI-------AKHYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------------------- 341 V+R+ MLM HYR P++F+ + L +A+ L + Sbjct: 285 EVVRMFMLMAHYRSPVNFSDELLGQAQNALERLYNAKYQMEYLLENNKSEAASEDEKTWM 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + A+ +DLNT AI A+ +L R++ N L +F + Sbjct: 345 DNLAQYKKGFIDAMNDDLNTADAIAAIFELVRDTNSNLSEASSREAVKAALDLFKELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 +G+ ++ + + +E L+ +R K K FS AD IR L +KG ILED + Sbjct: 405 IGLAAKEKETD--LEAEVEALIAQRQEARKNKDFSLADEIRDALLAKGIILEDTR----- 457 Query: 452 QRMTRWKQ 459 +WK+ Sbjct: 458 -EGVKWKK 464 >gi|209695403|ref|YP_002263332.1| cysteinyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] gi|226710839|sp|B6EH43|SYC_ALISL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|208009355|emb|CAQ79625.1| cysteinyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] Length = 462 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 175/483 (36%), Positives = 258/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVISRYLRFLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + N++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------NESCEALTERLIAEMHADFDALKMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--PE 181 AT +I +++ L++ +I G AY A N +++F+ YG SR+ +++ + G+RV E Sbjct: 114 ATEYITEIVELVERLIERGFAYVASNGDVMFEVKKFDEYGRLSRQDLEQLQAGSRVTLEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 174 TSVKRSGMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLM 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDAK-YVNTWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + + +R ++ HYR ++++ + L +A L + T Sbjct: 286 YDSETVRYFLMSGHYRSQLNYSEENLNQARSSLERLYTSLRGLDLTVTPAGGETFVTRFS 345 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL--- 401 +A+ +D NT A L ++ARE + L + A +LG+ + Sbjct: 346 TAMNDDFNTPEAYSVLFEMAREVNRLKTENIEAASKLGALMRELAEVLGLLSQEPEAFLQ 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + N IE L++ R K +S+AD R + + +LED G T W Sbjct: 406 GDSGSDNEVAEIEALIKARNDARAAKDWSAADAARDAITALNIVLED------GPEGTTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|323144957|ref|ZP_08079517.1| cysteine--tRNA ligase [Succinatimonas hippei YIT 12066] gi|322415236|gb|EFY06010.1| cysteine--tRNA ligase [Succinatimonas hippei YIT 12066] Length = 470 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 257/480 (53%), Gaps = 44/480 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I+NT+ RK EF+ I+ I MYVCG TVYD HIG+AR + FD++ R LRY Sbjct: 13 PMLQIHNTISRKKEEFKPINEGQIGMYVCGVTVYDLCHIGHARTFVNFDMVVRYLRYRGY 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+RNITDIDDKII+RA + + + + KD L + P + Sbjct: 73 K--VRYIRNITDIDDKIIKRAHERKV------SAKELAENFIVEMHKDFDALNIMRPDEE 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IP++I L+Q +I +G+AY A+ +++F + YG S + ++E + G R+ Sbjct: 125 PRATETIPEIIALVQRLIDNGNAYVADNGDVMFAIDTFKQYGRLSGQNLEELEAGARIEI 184 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ YLG+ FDIHGGG DLI Sbjct: 185 EKTKRNPFDFVLWKMSKPGEPSWSSPWGDGRPGWHIECSAMNLKYLGENFDIHGGGSDLI 244 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA + N W+H+G + + KMSKS NF TI ++LE Sbjct: 245 FPHHENEIAQSCCACHSK-YVNYWMHSGMVMINHEKMSKSLNNFFTIRDVLE-------H 296 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPAVLS 353 + A IR +L YR P+++T + L +A+ L++ + + Sbjct: 297 YDAETIRFFLLSAQYRSPLNYTQENLDKAKASLARLYTALRDVVPVKAEGEDEYTKRFKE 356 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-----DLLPIFNASAHILGIEVC--------KEH 400 + +D NT A+ L LA+ K L +LGI E Sbjct: 357 LMDDDFNTPGAMAVLFDLAKAVNKEEGETKAKLAGRLVELGSVLGILYQNPSSFLKGAES 416 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+QER K F +AD R +L + G +LED G T W++K Sbjct: 417 SDNDEVSVIEALIQERKDARARKDFKAADAARDKLTAMGIVLED------GPSGTTWRRK 470 >gi|70731271|ref|YP_261012.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] gi|109894922|sp|Q4K9S1|SYC_PSEF5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68345570|gb|AAY93176.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] Length = 460 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 255/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLITRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + +A +T + +D RL P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEAFEALTERMIAAMHEDEARLNIKKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHTMIQTLIDKGYAYAPGNGDVYYRVGKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKAAKPGEPSWPSPWGDGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + PA + Sbjct: 286 PEVVRYLLVASHYRSAINYSEDNLKDAKGALERFYHALKGLPKVAPAGGEAFVERFTQVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIDAAAGLAARLKELASVLGVLQLEADDFLQAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G ILED K T W+ Sbjct: 406 EGRVDGAQVEALIQARLAARANKDWAESDRIRDQITAMGVILEDGK------GGTTWR 457 >gi|312171645|emb|CBX79903.1| cysteinyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158] Length = 507 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 188/485 (38%), Positives = 253/485 (52%), Gaps = 49/485 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY Sbjct: 45 SMLKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGY 104 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + + YVRNITDIDDKII+RA + ++I +T + + KD L L P + Sbjct: 105 Q--LNYVRNITDIDDKIIKRAHEN------GESIEQLTQRMIGEMHKDFAALNILPPDLE 156 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I L++ +I HAY A N +++F S YGS SR+ +D+ + G RV Sbjct: 157 PRATRHIAEIIELVEKLIAREHAYVASNGDVMFSVDSDLQYGSLSRQDLDQLQAGARVEV 216 Query: 182 KYH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 217 TADVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDL 276 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A N W+H+G + ++ KMSKS NF T+ ++LE Sbjct: 277 MFPHHENEIAQSTSAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLE------- 328 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAV 351 + A +R ++ HYR +++ L +A L + T + Sbjct: 329 HYDAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFEARF 388 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH--- 400 +A+ +D NT A AL LARE + L +LG+ Sbjct: 389 RAAMDDDFNTPEAYSALFDLAREVNRMKAENPAAVDGLAARLRVLGGVLGLLEQDPEQFL 448 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +N IE L+Q R+ K K ++ AD R +L G +LED G T Sbjct: 449 QSGANVNDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGT 502 Query: 456 RWKQK 460 RW++K Sbjct: 503 RWRRK 507 >gi|78044929|ref|YP_361143.1| cysteinyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] gi|109894889|sp|Q3A9P1|SYC_CARHZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77997044|gb|ABB15943.1| cysteinyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] Length = 465 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 191/486 (39%), Positives = 261/486 (53%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL + EF +P + MYVCGPT Y++ HIGNARP++ FD + R Y E Sbjct: 1 MKIYNTLTKTKEEFIPREPGKVYMYVCGPTTYNYIHIGNARPIVFFDTVRRYFEYKGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII RA +E + + K ++ KD RL T P+ Sbjct: 60 -VIYVQNFTDIDDKIINRALEE------GISPIELGQKYIIEYFKDADRLGVKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I +++ +I G+AYE + F S +YG S R ++E K G RV Sbjct: 113 VTEHIPEIIEMVKGLIEKGYAYEVEGNVYFAVDSFSDYGKLSGRDLEELKAGARVEVDEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 173 KKNPLDFALWKKAKPGEPYWESPWGPGRPGWHIECSAMSLKYLGENFDIHGGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS + A W+HNGF+ + KMSKS GNF + E+LE +P Sbjct: 233 HENEVAQSEAFTG-KPFARYWMHNGFITVNQEKMSKSLGNFFLVREILE-------KFPG 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R +L THYR P+DF ++L EA+ L + + ++P Sbjct: 285 RVVRFFLLSTHYRSPLDFDDKKLNEAKAALERVDNFVQNLKEVNPLPGEARIEIQEKITN 344 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIE 395 A+ +D NT A+ +L +L R N + GIE Sbjct: 345 FLRDFNEAMEDDFNTAQAMASLFELVRFGNTQIASGNLTAGDKKLFEEALNVYTQVFGIE 404 Query: 396 V--CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 ++ ++I+ +E L++ R L K KK+ AD+IR +L+ +G ILED + Sbjct: 405 FGVLEKIAGEDITPFVELLIEVRARLKKEKKYDLADFIRDELKKQGIILEDT------PK 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKR 464 >gi|238754302|ref|ZP_04615659.1| Cysteinyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] gi|238707549|gb|EEP99909.1| Cysteinyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] Length = 463 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 180/484 (37%), Positives = 257/484 (53%), Gaps = 50/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITIYDLCHIGHGRTFVAFDVVARYLRYSGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA + N+ +TS+ + KD L P +P Sbjct: 60 SLTYVRNVTDVDDKIIKRAAEN------NETCDQLTSRMLAEMHKDFDALNLERPDLEPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L+Q +I HAY A N +++F S P+YG SR+ +++ + G RV Sbjct: 114 ATHHISEIIQLVQRLIERDHAYVAANGDVMFAVDSDPDYGLLSRQDLEQLQAGARVEIAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGPGRPGWHIECSAMNGKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGMDTNAVAAGGEEFEARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEH------ 400 + +D NT A L +ARE + + L AH+LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMAAANGLAAELRKLAHVLGLLAQDPEQFLQSS 405 Query: 401 ----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 ++ N IE L+++R K ++ AD R +L G +LED + T Sbjct: 406 AQTDVDNNEVSEIEALIKQRNDARSSKDWALADSARDRLNEMGIVLEDS------PQGTI 459 Query: 457 WKQK 460 W++K Sbjct: 460 WRRK 463 >gi|302188937|ref|ZP_07265610.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642] Length = 460 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI +++E + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVVE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + + A +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEAAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|33152217|ref|NP_873570.1| cysteinyl-tRNA synthetase [Haemophilus ducreyi 35000HP] gi|38372510|sp|Q7VMA0|SYC_HAEDU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|33148439|gb|AAP95959.1| cysteinyl-tRNA synthetase [Haemophilus ducreyi 35000HP] Length = 459 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 186/479 (38%), Positives = 267/479 (55%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL+R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 2 LKIYNTLKREKEEFKPINPAQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYSGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N++ + + + D L + P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNESCEALVERMIAEMHNDFDALNIMRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +++ +I++GHAY A + +++FD +S YG+ SR+ +D+ + G RV K Sbjct: 114 ATEHIAEIIAMVEKLIMNGHAYVAADGDVMFDVTSFNQYGALSRQNLDQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWKRS EP W SPWG GRPGWHIECSAM++ LG+ FDIHGGG DL+FP Sbjct: 174 AKKNPMDFVLWKRSKENEPSWLSPWGNGRPGWHIECSAMNNKELGEHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + E N W+H G L ++ KMSKS GNF +I +L + Sbjct: 234 HHENEIAQSCCAHQGE-YVNYWLHTGMLTIDKEKMSKSVGNFFSIRHMLGL-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R L HYR +D++ L A L + + A +A Sbjct: 286 AESLRYFFLTAHYRSLLDYSTDNLDLARSALERLYTALRGCDLSVQANGGENYVTAFKTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT +A+ L ++ARE K + L A +LG+ K Sbjct: 346 MDDDFNTPAALAVLFEMAREVNKLKTEDQQQANALAVCLKELAAVLGLLTQDPDNFLKGE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +N + + IE L+Q+R K ++ AD +R +L++ +LED T W++ Sbjct: 406 VNIDQTAEIEALIQQRNQAKANKNWAVADQVRGKLKAMNILLEDTPT------GTVWRK 458 >gi|71736729|ref|YP_273919.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|109894921|sp|Q48L06|SYC_PSE14 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71557282|gb|AAZ36493.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 460 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|261345727|ref|ZP_05973371.1| cysteine--tRNA ligase [Providencia rustigianii DSM 4541] gi|282566216|gb|EFB71751.1| cysteine--tRNA ligase [Providencia rustigianii DSM 4541] Length = 462 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 179/483 (37%), Positives = 257/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LQIFNTLTRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII+RA + N+++ +T++ + KD L L P +PR Sbjct: 61 -LNYVRNVTDIDDKIIKRAAEN------NESVEELTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L +++I GHAY A+ +++F+ + PNYG SR+ +D+ + G RV Sbjct: 114 ATRHIHEIIELTESLIERGHAYVADNGDVMFEVKTDPNYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKTLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + + Sbjct: 234 HHENEIAQSTCAHEG-PYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVL-------QYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTSLRGTDKSVAPAGGEAFKARFCEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + + A +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDIAREINRLKTEDMAAANGMAAQLRELAKVLGLLEQEPEAFLQGG 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + IE L+++R + K ++ AD R L + G +LED T W Sbjct: 406 AQGEDDAEVAKIEALIKQRNDARQSKDWALADQARDALTAMGVVLEDSSA------GTTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|251788870|ref|YP_003003591.1| cysteinyl-tRNA synthetase [Dickeya zeae Ech1591] gi|247537491|gb|ACT06112.1| cysteinyl-tRNA synthetase [Dickeya zeae Ech1591] Length = 461 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + I +T++ + D L L+P +PR Sbjct: 61 -VKYVRNITDIDDKIIKRA------TENGETIEQLTNRMIGEMHTDFQALNILSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I ++I L++ +I HAY A+ +++F + P YG SR+ +D+ K G RV Sbjct: 114 ATHYIAEIIELVEKLIARRHAYVADNGDVMFSVDTAPGYGVLSRQDLDQLKAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGD-YVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLT-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSA 354 A IR ++ HYR +++T + L +A L + + A Sbjct: 286 AETIRYFLISGHYRSQLNYTEENLKQARASLERLYTALRGTDASASAAGGEAFERRFRDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L + A +LG+ C L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDAAAANGLAAMLRQLAGVLGLLECDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R + K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVQEIEALIKQRNDARQSKDWALADAARNRLTEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|312961737|ref|ZP_07776235.1| Cysteinyl-tRNA synthetase [Pseudomonas fluorescens WH6] gi|311283996|gb|EFQ62579.1| Cysteinyl-tRNA synthetase [Pseudomonas fluorescens WH6] Length = 462 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ HIG+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHIGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + +A +T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEAFDALTERMIAAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVAKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGTKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + PA + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPAVAPAGGEAFVARFTEVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLDAAAGLAARLKELASVLGVLQMEADDFLQAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARTNKDWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|113460388|ref|YP_718450.1| cysteinyl-tRNA synthetase [Haemophilus somnus 129PT] gi|123131947|sp|Q0I1Q1|SYC_HAES1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|112822431|gb|ABI24520.1| cysteinyl-tRNA synthetase [Haemophilus somnus 129PT] Length = 459 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 183/479 (38%), Positives = 256/479 (53%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKIFNTLTREKEVFKPISENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII R+ + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIRRS------LENRETCEQLVDRMVVEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY A+ +++FD S YG SR+ + + + G RV Sbjct: 114 ATHHIAEIIALVEKLIARGHAYVADNGDVMFDVESFKEYGKLSRQDLTQLQAGARVEISE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWNSPWGAGRPGWHIECSAMNCKHLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGNR-YVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A L + A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLDLAHGALERLYTALRGTDKSAVAFGGENFIAQFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEH 400 + +D NT +AI L ++ARE + + L A ILG+ + + Sbjct: 346 MNDDFNTPNAISVLFEMAREINRLKNEDKLLADGLAARLRELAGILGLLEQDPEDFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+++R + K ++ AD R +L + G ILED G T W++ Sbjct: 406 SDDAEIAKIEALIKQRNDARQAKDWARADAARNELTTMGVILED------GSNGTMWRK 458 >gi|146307594|ref|YP_001188059.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina ymp] gi|187629851|sp|A4XVG1|SYC_PSEMY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145575795|gb|ABP85327.1| cysteinyl-tRNA synthetase [Pseudomonas mendocina ymp] Length = 461 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 189/478 (39%), Positives = 262/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + FQ + + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR + Sbjct: 3 LSIYNTLTKTKDVFQPLVGNQVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRQRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + + + +D RL+ L P +PR Sbjct: 62 -VTYVRNITDIDDKIIKRANEN------GEPFEALVERMIAAMHEDEARLSVLRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M +IQ +I G+AY N ++ + + YG SRRKIDE K+G R+ Sbjct: 115 ATGHIAGMHQMIQTLIDKGYAYAPGNGDVYYRVTRFETYGKLSRRKIDELKIGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 IKEDPLDFVLWKGAKPGEPSWDSPWGKGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KQYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ PA A+ Sbjct: 287 PEVVRYLLVSSHYRSPINYSEESLKEAKGALERFYNGLKGLPEAAPAGGEAYVERFGVAM 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH------- 400 +D N+ A L ++ RE + + L A +LG+ + Sbjct: 347 DDDFNSPEACAVLFEMIREVNRLRESDVQAAAGLAAQLKQLASVLGVLQLEPEAFLQAGA 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+ RL K ++ +D IR QL + G +LED K T W+ Sbjct: 407 AGKVDAAEVEALIAARLQARADKNWAESDRIRDQLTAMGVVLEDGK------GGTTWR 458 >gi|254172364|ref|ZP_04879039.1| cysteinyl-tRNA synthetase [Thermococcus sp. AM4] gi|214033293|gb|EEB74120.1| cysteinyl-tRNA synthetase [Thermococcus sp. AM4] Length = 476 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 179/493 (36%), Positives = 252/493 (51%), Gaps = 60/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 IRIYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHRGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA + + + + + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIKRANE------TGEDPKELAERFLRIFLEDMKALKVKPADVYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ ++I ++ + G+AYE ++ + F+ +YG S+ K+++ G RV Sbjct: 115 VTEHMDEIINFVKKLEEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK++ P EP WESPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KRNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E + W+H GFL + G KMSKS GNF+T+ ELL + + Sbjct: 235 HENEIAQSEACFGHE-WVHYWMHTGFLMVNGEKMSKSLGNFVTVRELL-------KRYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------------------- 342 VIRL +L HYR P+D++ + + A+ L + T Sbjct: 287 EVIRLFVLQRHYRSPLDYSEEGIEHAKNNLERLYNTLENIRVAMGRAEISFRWDEPEFRV 346 Query: 343 --SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNAS 388 + A+ +D NT A++A+ +++ + F Sbjct: 347 YEAIRDARRKFYEAMDDDFNTAEALKAVFEVSNAINRYLTEVETPKESILRKAWEFFRDV 406 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + G+ + KE N I+ L++ R L K +KF AD IR +L G LED Sbjct: 407 GEVFGLFEDYFKEQRAGNEEALIDLLIEVRAQLRKERKFDLADRIRDELRKLGIQLEDT- 465 Query: 447 NPDNGQRMTRWKQ 459 + T WK+ Sbjct: 466 -----PQGTVWKR 473 >gi|289422515|ref|ZP_06424358.1| cysteine--tRNA ligase [Peptostreptococcus anaerobius 653-L] gi|289157087|gb|EFD05709.1| cysteine--tRNA ligase [Peptostreptococcus anaerobius 653-L] Length = 467 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 183/489 (37%), Positives = 271/489 (55%), Gaps = 55/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ RK EF ++ ++MYVCGPTVY+F H+GNARP VFD L R Y E Sbjct: 1 MKVYNTMTRKKEEFIPLEEGKVKMYVCGPTVYNFIHLGNARPFTVFDTLRRYFEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII+R+ +E + + K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIIKRSHEE------GISPEEVAEKYIKEYFIDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I ++I IQ+++ G+AYE+N +++F T YG S + I+E ++G R+ Sbjct: 113 VTDNIKEIISFIQDLVDKGYAYESNGDVLFRTREFKEYGKLSHQNIEELELGARIDVDDK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MSS YLG DIH GG DL FPH Sbjct: 173 KEDPLDFVLWKAKKDGEPGWKSPWGEGRPGWHIECSVMSSRYLGNTIDIHAGGQDLQFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + AN W+HNG++N++G KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSECRNG-HVFANYWMHNGYINVDGEKMSKSLGNFFTVREIAE-------KYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-----------------GII 347 ++R +L THYR P++F+ L +A+ L + + G++ Sbjct: 285 GLVRFFLLSTHYRNPVNFSDTILDQAKAGLERLTNARDNAEFMMSKLEDTKMSPEETGLV 344 Query: 348 DP------AVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 D + A+ +DLNT AI A+ +LA+ N + +FN + Sbjct: 345 DELNSYKTKFIEAMDDDLNTSDAISAIFELAKFMNTNIKDTSSKEFIGLNIDLFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I N +++ +E+++ +R K K F+ AD IR++L G ++ED + Sbjct: 405 LNIANKSVEENDDLARTVEEMIAKRAEAKKNKDFALADKIREELLEMGIVIEDTR----- 459 Query: 452 QRMTRWKQK 460 + +WK+K Sbjct: 460 -QGVKWKRK 467 >gi|170717373|ref|YP_001783468.1| cysteinyl-tRNA synthetase [Haemophilus somnus 2336] gi|189082066|sp|B0UVH6|SYC_HAES2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|168825502|gb|ACA30873.1| cysteinyl-tRNA synthetase [Haemophilus somnus 2336] Length = 459 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 257/479 (53%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LRY E Sbjct: 2 LKIFNTLTREKEVFKPISENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII RA + + + + + KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIRRALENK------ETCEQLVDRMVVEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I GHAY A+ +++FD S YG SR+ + + + G RV Sbjct: 114 ATHHIAEIIALVEKLIARGHAYVADNGDVMFDVESFKEYGKLSRQDLTQLQAGARVEISE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWNSPWGAGRPGWHIECSAMNCKHLGEHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGNR-YVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A L + A Sbjct: 286 AESVRYFLLTAHYRSQLNYSEENLDLAHGALERLYTALRGTDKSAVSFGGENFIAQFTEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEH 400 + +D NT +AI L ++ARE + + L A ILG+ + + Sbjct: 346 MNDDFNTPNAISVLFEMAREINRLKNEDKLLADGLAARLRELASILGLLDQDPEDFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+++R + K ++ AD R +L + G ILED N T W++ Sbjct: 406 SDDAEIAKIEELIKQRNDARQAKDWARADAARNELTTMGVILEDSSN------GTMWRK 458 >gi|330897806|gb|EGH29225.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 460 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 261/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|270157070|ref|ZP_06185727.1| cysteinyl-tRNA synthetase [Legionella longbeachae D-4968] gi|269989095|gb|EEZ95349.1| cysteinyl-tRNA synthetase [Legionella longbeachae D-4968] Length = 464 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 179/475 (37%), Positives = 258/475 (54%), Gaps = 40/475 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YN+L R F +I P I +YVCG TVYD HIG+AR M+ FDV+ R LR Sbjct: 10 NMLHLYNSLTRTKEPFVSISPGKIGIYVCGITVYDRCHIGHARSMVAFDVIVRYLRSQGY 69 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+RNITDIDDKII RA + I +T++ +DT L L P + Sbjct: 70 D--VKYIRNITDIDDKIIARAHERAIPI------DELTAQYIAAMNEDTQALNILPPDVE 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HI +I+LI+ ++ G+AY ++ ++ + +S +YG S + ++ G RV Sbjct: 122 PRATDHIHSIIHLIERLLAKGNAYLSDNGDVCYQVNSFADYGKLSNKDLEGLMAGARVEI 181 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK++ EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGGLDL Sbjct: 182 VKEKRSPLDFVLWKKAKQGEPSWPSPWGEGRPGWHIECSAMAMSELGEQFDIHGGGLDLQ 241 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + AN W+H G L + KMSKS GNF TI ++L Sbjct: 242 FPHHENEIAQSEAAT-EKPFANYWLHVGMLQVNNEKMSKSLGNFFTIADVLAKH------ 294 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----SKGIID----PAVL 352 V+R +L +HYR ++++ + L A+ L++ QT + G +D Sbjct: 295 -HPEVVRYFLLSSHYRSSLNYSEENLANAKKALTRLYQTIKDSRFIADGELDNHWINEFN 353 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEHLNKN 404 A+ +D NT A+ + +L+ E K++ L + +G+ + L+ Sbjct: 354 QAMNDDFNTPVALSVMFQLSHEVNKSNSPILAATLKYLGNTMGLLLTDPSSFLQSGLDDE 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +IE+L+ ERL + + AD IR L S+G LED G T W++ Sbjct: 414 DKASIEQLINERLQARTERNWERADQIRADLLSRGIELED------GANGTTWRK 462 >gi|271501481|ref|YP_003334507.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech586] gi|270345036|gb|ACZ77801.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech586] Length = 461 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 255/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + I +T++ + D L L+P +PR Sbjct: 61 -VKYVRNITDIDDKIIRRA------TENGETIEQLTNRMIDEMHTDFRALNILSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I ++I L++ +I HAY A+ +++F + P YG SR+ +++ K G RV Sbjct: 114 ATHYIAEIIELVEKLIARRHAYVADNGDVMFSVDTAPGYGVLSRQDLEQLKAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGD-YVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLS-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A IR ++ HYR +++T + L +A L + + + A Sbjct: 286 AETIRYFLISGHYRSQLNYTEENLKQARASLERLYTALRGTDASVPAAGGEAFEHRFRDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKADDAAAASGLASALRQLAGVLGLLEHDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+++R + K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVQEIEALIKQRNDARQSKDWALADAARNRLTEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|330952785|gb|EGH53045.1| cysteinyl-tRNA synthetase [Pseudomonas syringae Cit 7] Length = 460 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 262/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIGAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPLAEPAGGEAFVERFSAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVNAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|220934112|ref|YP_002513011.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|254781696|sp|B8GNT5|SYC_THISH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219995422|gb|ACL72024.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 460 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 186/480 (38%), Positives = 264/480 (55%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+N+L R+ F ++P +RMYVCG TVYD+ H+G+AR ++VFDV+YR L+ + Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKALGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RNITDIDDKII RA + + I +T + +D L L P+ +PR Sbjct: 61 -VTYIRNITDIDDKIIRRAAEN------GEDIRALTDRFIAAMHEDAEALGVLPPSAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I ++ G+AY + ++ + + YG S +++++ + G RV Sbjct: 114 ATEHIDGMLAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DL FP Sbjct: 174 AKRDPLDFVLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ + KMSKS GNF T+ E+L +P Sbjct: 234 HHENEIAQSEAATCEH-FVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLAR-------YP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A V+R +L +HYR P++++ + L A L++ +DPA +A Sbjct: 286 AEVVRYFILSSHYRSPLNYSDEPLDAARAGLTRLYTALRGVQAVDPAGQGEGYRRRFQAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE---------------VCKE 399 + +D NT A+ L +ARE + D P A L E + Sbjct: 346 MDDDFNTPVAMAVLFDIARELNRLRDEDPAGAAPLAGLLRELGGMLGLLAGDPEAFLKGG 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 AIE L+ +RL K K F+ AD IR +L +G +LED G T W++ Sbjct: 406 EAGDLDEAAIEALIAQRLAARKAKDFAEADRIRDELAGQGVVLED------GPGGTTWRR 459 >gi|212711245|ref|ZP_03319373.1| hypothetical protein PROVALCAL_02317 [Providencia alcalifaciens DSM 30120] gi|212685974|gb|EEB45502.1| hypothetical protein PROVALCAL_02317 [Providencia alcalifaciens DSM 30120] Length = 462 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 183/483 (37%), Positives = 259/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LQIFNTLSRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAISRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TDIDDKII+RA + N+++ +T++ + KD L L P +PR Sbjct: 61 -VNYVRNVTDIDDKIIKRAAEN------NESVEELTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L +++I GHAY A+ +++F+ + P+YG SR+ +D+ + G RV Sbjct: 114 ATRHIHEIIELTESLIERGHAYVADNGDVMFEVKTDPSYGLLSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWESPWGLGRPGWHIECSAMNSKTLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTIRDVLE-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + T I A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDKSATPAGGEIYKSRFCEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A AL +ARE + + + A +LG+ Sbjct: 346 MNDDFNTPEAYSALFDMARELNRLKTENMDAANGMAAQLRELAKVLGLLEQDPETFLQGG 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + IE L+++R + K ++ AD R L + G +LED T W Sbjct: 406 AQSEDDAEVAKIEALIKQRNDARQSKDWALADQARDALTAMGIVLEDSSA------GTTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|66044980|ref|YP_234821.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a] gi|75502675|sp|Q4ZVN9|SYC_PSEU2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|63255687|gb|AAY36783.1| Cysteinyl-tRNA synthetase, class Ia [Pseudomonas syringae pv. syringae B728a] Length = 460 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 262/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIEAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAACLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR ++ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDRITAMGVLLEDGK------GGTTWR 457 >gi|315230286|ref|YP_004070722.1| cysteinyl-tRNA synthetase [Thermococcus barophilus MP] gi|315183314|gb|ADT83499.1| cysteinyl-tRNA synthetase [Thermococcus barophilus MP] Length = 474 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 183/493 (37%), Positives = 250/493 (50%), Gaps = 60/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 1 MKVYNTLTKQKEEFKPLREGEVRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEHKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII RA++ + + K + F++D L PR Sbjct: 59 TVLMVMNFTDIDDKIIRRAQE------TGEDPKELAEKFLKYFLEDMKALKVKPADIYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI +I ++ + G+AYE ++ + F+ +YG S K++E + G RV Sbjct: 113 VTEHIEDIIDFVKKLEEKGYAYEGSDGVYFEVQRFRDYGKLSGIKLEELRKGARVEPGEG 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK++ P EP W+SPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIFPH Sbjct: 173 KRNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSTMSTKYLGEQFDIHGGGNDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ E W+H GF+ ++G KMSKS GNF+TI ELL + + Sbjct: 233 HENEIAQTEACTGKE-WVRYWLHTGFVMVKGEKMSKSLGNFVTIRELL-------QRYSP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------------ 346 VIR +L HYR P+D+T + + A+ L K T + I Sbjct: 285 EVIRFFVLQKHYRSPLDYTEEGIQHAKNNLEKLYNTIENIRIALEKAEIPFKWSKEEFEL 344 Query: 347 ------IDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNAS 388 A+ +D NT A++ + ++A K L F Sbjct: 345 YEVIREAKRKFYEAMDDDFNTAEAMKPIFEVANAVNKYLAKVEKPKESVLRKALEFFKMV 404 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + GI E KE IE L+Q R L K K ++ AD IR +L G LED Sbjct: 405 GEVFGIFEEYFKETKETKEEELIELLIQVRAELRKQKNYALADKIRAELRELGIQLEDT- 463 Query: 447 NPDNGQRMTRWKQ 459 + T WK+ Sbjct: 464 -----PQGTIWKR 471 >gi|121996916|ref|YP_001001703.1| cysteinyl-tRNA synthetase [Halorhodospira halophila SL1] gi|187629827|sp|A1WT89|SYC_HALHL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|121588321|gb|ABM60901.1| cysteinyl-tRNA synthetase [Halorhodospira halophila SL1] Length = 459 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 186/478 (38%), Positives = 258/478 (53%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L FQ I+P +R+YVCG TVYDF H+G+AR ++VFD + R LR+ E Sbjct: 2 LKIHNSLTGAKEPFQPIEPGQVRIYVCGMTVYDFCHLGHARALVVFDAVVRYLRWLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + ++ +T + + +D + L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAAEN------GEPMTALTDRFIRAMHEDCSALGVEPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + MI LI+ +I GHAY + ++ F +S P YG S R+++E + G+R+ Sbjct: 114 ATERLESMIALIEELIAGGHAYVGDNGDVYFSVASFPEYGKLSGRRVEELRSGSRIEPDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FDIHGGG+DL FP Sbjct: 174 AKHDPVDFVLWKAAKSGEPAWPSPWGDGRPGWHIECSAMSRDLLGSHFDIHGGGVDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+HNG + ++ KM+KS GNF T+ ++L P Sbjct: 234 HHENEIAQSECASG-HRFVNYWMHNGHVRIDDEKMAKSLGNFFTVRDVLAEH-------P 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------VLSALY 356 A V+RL +L +HYR P+++T L EA L + PA A+ Sbjct: 286 AEVVRLFLLSSHYRSPLNYTGDALDEARGGLERLYNALRGLPAAAPARSQARERFREAMD 345 Query: 357 NDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A+ L ARE + + +LG+ Sbjct: 346 DDFNTREALAVLFDGAREINRLREAGDASGAASAAAELRELGAVLGLLQQDPEAYLRGDV 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE LV +R K K F+ AD IR +L+++G LED T+W++ Sbjct: 406 ADAEAEEIESLVAQRTAARKAKDFAEADRIRDELQARGIELEDT------PEGTKWRR 457 >gi|300023350|ref|YP_003755961.1| cysteinyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299525171|gb|ADJ23640.1| cysteinyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 469 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 229/470 (48%), Positives = 299/470 (63%), Gaps = 22/470 (4%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF IDPSN+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG + Sbjct: 3 LKLYNTLTRQKAEFAPIDPSNVRMYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHVYGPE 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA ++ P +P+NDAI +T +QF +D L L PT +PR Sbjct: 63 HVTYVRNITDVDDKINARAARDFPDLPLNDAIRKVTEATEKQFHEDIAALGVLPPTFEPR 122 Query: 125 ATNHI------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 AT +I M+ LI+ ++ G+AY A + ++FD +S+P+YG S R +DE + G R Sbjct: 123 ATEYIRRDDGRETMVSLIEALVQRGNAYVAEDHVLFDVASMPDYGRLSNRSLDEMEAGAR 182 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHG 235 V +KK P DF+LWK S P EP W SP G GRPGWHIECSAM+ LG FDIHG Sbjct: 183 VEVAPYKKGPMDFVLWKPSKPGEPAWPSPCGIATPGRPGWHIECSAMAGALLGPEFDIHG 242 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DL FPHHENEIAQS CA AN+W+HNGFL +EG KMSKS GNF+TINELL Sbjct: 243 GGIDLTFPHHENEIAQSRCAHGTPFMANVWMHNGFLQVEGEKMSKSLGNFVTINELLSD- 301 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----TSTSKGIIDPAV 351 WP V+R ML THYR+PID+T + L E++ +LS W ++ + + PA Sbjct: 302 -----GWPGEVLRFNMLRTHYRQPIDWTKKGLEESQKILSGWFSQNGLSTDDRTELSPAF 356 Query: 352 LSALYNDLNTVSAIQALHKL--ARESTKNHDLLPIFNASAHIL-GIEVCKEHLNKNISIA 408 L AL +DLNT AI LH A+++T+ L L + ++++ Sbjct: 357 LDALADDLNTPKAIAELHGFATAKDATRLGAALSFLGFDGATLKKADARAAETAQSVASK 416 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +E L+ RL K K F+ +D IR +L G L+D KN + G+ T W+ Sbjct: 417 VEPLIIARLDARKRKDFAESDRIRDELAKMGISLKDAKNKETGEIETTWE 466 >gi|226328546|ref|ZP_03804064.1| hypothetical protein PROPEN_02441 [Proteus penneri ATCC 35198] gi|225203279|gb|EEG85633.1| hypothetical protein PROPEN_02441 [Proteus penneri ATCC 35198] Length = 463 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 186/482 (38%), Positives = 263/482 (54%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGKIGMYVCGITIYDLCHIGHGRTFVAFDAITRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TD+DDKII+RA I N+ +T++ + KD L P +PR Sbjct: 61 -VNYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNIARPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIELTEALIKLGHAYVADNGDVMFAIDTDPDYGLLSRQDLEQLQAGARVEVAN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG+GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGKGRPGWHIECSAMNSKELGHHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR +++T + L +A L + + + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTSLRGTDENAQPVGGEAFEAQFIDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHL---- 401 + +D NT A L LARE + + L + A +LG +E EH Sbjct: 346 MNDDFNTPEAYSVLFDLAREVNRLKAVDMNAANGLAAVLRKLAKVLGLLEQEPEHFLQSG 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + IE L+Q+R K K +++AD R L + G +LED G + T W Sbjct: 406 AKADDASEVEKIELLIQQRNDARKNKDWAAADVARDALTAMGIVLED------GPQGTVW 459 Query: 458 KQ 459 ++ Sbjct: 460 RR 461 >gi|270263639|ref|ZP_06191908.1| cysteinyl-tRNA synthetase [Serratia odorifera 4Rx13] gi|270042523|gb|EFA15618.1| cysteinyl-tRNA synthetase [Serratia odorifera 4Rx13] Length = 461 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 177/482 (36%), Positives = 249/482 (51%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII RA ++ +T++ + D L P +PR Sbjct: 60 SLNYVRNVTDVDDKIIRRA------TENGESCDQLTARMLAEMHADFDSLLIERPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + Q +I HAY A N +++F S P YG SR+ +D+ + G RV Sbjct: 114 ATQHIAEIIEITQRLIDRDHAYVASNGDVMFSIDSDPQYGLLSRQDLDQLQAGARVEIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWQSPWGAGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCAHDG-PYVNYWMHSGMVMIDREKMSKSLDNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARTALERLYTALRGTDANAQPAGGEAFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A AL LARE + + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSALFDLAREVNRLKGEDMAAANGLAAELRKLAKVLGLLQQEPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K K ++ AD R +L +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIKQRNDARKAKDWALADAARDRLNEMSIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|240103606|ref|YP_002959915.1| cysteinyl-tRNA synthetase [Thermococcus gammatolerans EJ3] gi|259511844|sp|C5A739|SYC_THEGJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239911160|gb|ACS34051.1| Cysteinyl-tRNA synthetase (cysS) [Thermococcus gammatolerans EJ3] Length = 476 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 183/493 (37%), Positives = 252/493 (51%), Gaps = 60/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ EF+ + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 3 IRIYNTLTRQKEEFKPLHEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA + + + K + F++D L PR Sbjct: 61 TVLMVMNFTDIDDKIIKRANE------TGEDPKELAEKFLRIFLEDMKALKVKPADIYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +I I+ + G+AYE ++ + F+ +YG S+ K+++ G RV Sbjct: 115 VTEHMQDIISFIKKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEG 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK++ P EP WESPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 175 KRNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E + W+H GFL + G KMSKS GNF+T+ ELL + + Sbjct: 235 HENEIAQSEACFGHE-WVHYWMHTGFLMVNGEKMSKSLGNFVTVRELL-------KRYNP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------------------- 341 VIRL +L HYR P+D++ + + A+ L + T Sbjct: 287 EVIRLFVLQRHYRSPLDYSEEGIEHAKNNLERLYNTLENIRVAMSKAEISFRWDEPEFRA 346 Query: 342 -TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNAS 388 + A+ +D NT A++A+ +++ + F Sbjct: 347 YEAIRDARKKFYEAMDDDFNTAEALKAVFEVSNAINRYLTEVEKPKESILRKAWEFFKDV 406 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + G+ + KE +N I LV+ R L K KKF AD IR++L G LED Sbjct: 407 GEVFGLFEDYFKEQKAENDEELINLLVEVRAQLRKEKKFDLADKIREELRKLGIQLEDT- 465 Query: 447 NPDNGQRMTRWKQ 459 + T WK+ Sbjct: 466 -----PQGTVWKR 473 >gi|289164517|ref|YP_003454655.1| cysteine tRNA synthetase [Legionella longbeachae NSW150] gi|288857690|emb|CBJ11533.1| cysteine tRNA synthetase [Legionella longbeachae NSW150] Length = 454 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 179/473 (37%), Positives = 258/473 (54%), Gaps = 40/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R F +I P I +YVCG TVYD HIG+AR M+ FDV+ R LR + Sbjct: 2 LHLYNSLTRTKEPFVSISPGKIGIYVCGITVYDRCHIGHARSMVAFDVIVRYLRSQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII RA + I +T++ +DT L L P +PR Sbjct: 61 -VKYIRNITDIDDKIIARAHERAIPI------DELTAQYIAAMNEDTQALNILPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI +I+LI+ ++ G+AY ++ ++ + +S +YG S + ++ G RV Sbjct: 114 ATDHIHSIIHLIERLLAKGNAYLSDNGDVCYQVNSFADYGKLSNKDLEGLMAGARVEIVK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGGLDL FP Sbjct: 174 EKRSPLDFVLWKKAKQGEPSWPSPWGEGRPGWHIECSAMAMSELGEQFDIHGGGLDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G L + KMSKS GNF TI ++L Sbjct: 234 HHENEIAQSEAAT-EKPFANYWLHVGMLQVNNEKMSKSLGNFFTIADVLAKH-------H 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----SKGIID----PAVLSA 354 V+R +L +HYR ++++ + L A+ L++ QT + G +D A Sbjct: 286 PEVVRYFLLSSHYRSSLNYSEENLANAKKALTRLYQTIKDSRFIADGELDNHWINEFNQA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEHLNKNIS 406 + +D NT A+ + +L+ E K++ L + +G+ + L+ Sbjct: 346 MNDDFNTPVALSVMFQLSHEVNKSNSPILAATLKYLGNTMGLLLTDPSSFLQSGLDDEDK 405 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +IE+L+ ERL + + AD IR L S+G LED G T W++ Sbjct: 406 ASIEQLINERLQARTERNWERADQIRADLLSRGIELED------GANGTTWRK 452 >gi|320325346|gb|EFW81413.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. B076] gi|320327670|gb|EFW83678.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882429|gb|EGH16578.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 460 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +R+YVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRIYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPAAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDVTAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAQVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|310766910|gb|ADP11860.1| Cysteinyl-tRNA synthetase [Erwinia sp. Ejp617] Length = 462 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 188/483 (38%), Positives = 254/483 (52%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + +D L L P +PR Sbjct: 60 HLKYVRNITDIDDKIIKRANEN------GESIERLTNRMIDEMHQDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A N +++F S P YGS SR+ +D+ + G RV Sbjct: 114 ATRHIAEIIELVEKLITREHAYVASNGDVMFSVDSDPQYGSLSRQDLDQLQAGARVEVAA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 PHHENEIAQSTCAHDG-PYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVL-------QHY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLS 353 A +R ++ HYR +++ L +A L + T + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTRATPAGGEEFEARFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEH----- 400 A+ +D NT A AL LARE + L +LG+ Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKGEDPAAADGLAARLRVLGGVLGLLEQDPEQFLQS 405 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +N IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 406 GVNINDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|330959375|gb|EGH59635.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 460 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRARDN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGDTFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ R+ + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVRDINRLRESDVAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|307266362|ref|ZP_07547900.1| cysteinyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918598|gb|EFN48834.1| cysteinyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 466 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 186/488 (38%), Positives = 255/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R E + ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y + Sbjct: 1 MKLYNTLSRTKEELEPLNDKIVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKEVAEKYIDEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL+FPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSEAAY-EQPFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS----------- 353 V+RL MLM HYR PI+F++ + +A + + + Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLMEQANSAYERLLNAVANLKHLANVCKDGGLNEEEKKLM 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ S N +L +F + + Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTSNANLSRNSSKKLVEYILDMFLKLSEV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + + I L++ER K K + AD IR +L KG ILED Sbjct: 405 LGLSY-RGVETELNDEEILALIEERQKARKEKNWKLADEIRDRLREKGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PEGVRWKR 465 >gi|15596992|ref|NP_250486.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|218892253|ref|YP_002441120.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] gi|254240136|ref|ZP_04933458.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 2192] gi|21264027|sp|Q9I2U7|SYC_PSEAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735063|sp|B7VB84|SYC_PSEA8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|9947777|gb|AAG05184.1|AE004605_6 cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|126193514|gb|EAZ57577.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 2192] gi|218772479|emb|CAW28261.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] Length = 460 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 256/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ +A+ Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRFYNALKGLPEAAPAEAAEYVERFAAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A L +LARE + + L A +LG+ + Sbjct: 346 DDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAFLQAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|313110488|ref|ZP_07796373.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 39016] gi|310882875|gb|EFQ41469.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa 39016] Length = 460 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 256/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ +A+ Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRFYNALKGLPEAAPAEAAEYVERFAAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A L +LARE + + L A +LG+ + Sbjct: 346 DDDFNTAGACAVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAFLQAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|77459860|ref|YP_349367.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] gi|109894924|sp|Q3KA28|SYC_PSEPF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77383863|gb|ABA75376.1| cysteinyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] Length = 460 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 175/478 (36%), Positives = 255/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ + Sbjct: 2 LTIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T + +D RL P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFEALTERMIAAMHEDEARLNIKKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFMGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KTYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + PA + Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDNLKDAKGALERFYHALKGLPKVAPAGGEAFVERFTQVM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDLDAAAGLAARLKELASVLGVLQLEADDFLQAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + ++ L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGRVDAAEVDALIQARLTARANKDWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|255654140|ref|ZP_05399549.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-23m63] Length = 465 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 259/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 1 MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E + + +K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIINRSHEE------GISPEEVAAKYIKEYFVDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 173 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQSEARSG-KTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------------------- 342 ++R ML HYR P++F+ + L +A+ L + T Sbjct: 285 EIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVELV 344 Query: 343 -SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + A+ +D+NT A+ + +LA+ N D L FN + Sbjct: 345 KELDGFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I K+ + + IE+L+Q+R K K+F AD IR+QL G +LED + Sbjct: 405 LNIVNKKK--DTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTR----- 457 Query: 452 QRMTRWKQ 459 + +WK+ Sbjct: 458 -QGVKWKR 464 >gi|239825672|ref|YP_002948296.1| cysteinyl-tRNA synthetase [Geobacillus sp. WCH70] gi|259511835|sp|C5D3P6|SYC_GEOSW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239805965|gb|ACS23030.1| cysteinyl-tRNA synthetase [Geobacillus sp. WCH70] Length = 466 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 182/489 (37%), Positives = 261/489 (53%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + Sbjct: 2 SSIRLYNTLTRKKELFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I+ AR+ + + + I + Q + +D T L C Sbjct: 62 E--VKYVSNFTDVDDKLIKAARE------LGEDVPTIAERFIQAYFEDITALGCKKADVH 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +I +I IQ +I G+AYE + ++ + T YG S + IDE K G R+ Sbjct: 114 PRVTENIDTIIEFIQTLIDRGYAYEVDGDVYYRTRKFKEYGKLSHQSIDELKAGARIEVG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 174 EKKEDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ + Sbjct: 234 PHHENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------QQI 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIID---- 348 V+R ML HYR PI+++ + L A+ L + Q+ST+ D Sbjct: 286 DPQVLRFFMLSVHYRHPINYSEELLESAKKGLERLKTSYFNLKHRLQSSTNLTDDDDQWL 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A + + +D NT + I L +L++++ H L F Sbjct: 346 ARIQEQHEAFIREMDDDFNTANGIAVLFELSKQANLYLLEKNTSERVIHAFLREFEQLLD 405 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI + +E L L+Q+R K + F+ AD IR +L++K ILED Sbjct: 406 VLGITLQEEELLDEEIE---ALIQKRNEARKNRNFALADQIRDELKAKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|296449821|ref|ZP_06891588.1| cysteine--tRNA ligase [Clostridium difficile NAP08] gi|296877885|ref|ZP_06901905.1| cysteine--tRNA ligase [Clostridium difficile NAP07] gi|296261308|gb|EFH08136.1| cysteine--tRNA ligase [Clostridium difficile NAP08] gi|296431082|gb|EFH16909.1| cysteine--tRNA ligase [Clostridium difficile NAP07] Length = 467 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 177/490 (36%), Positives = 259/490 (52%), Gaps = 57/490 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y Sbjct: 1 MSVKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII R+ +E + + +K +++ D L T Sbjct: 61 D--VTYVQNFTDVDDKIINRSHEE------GISPEEVAAKYIKEYFVDCDGLGIKRATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+ T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 PQVTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL F Sbjct: 173 DQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 PHHENEIAQSEARSG-KTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------------- 342 ++R ML HYR P++F+ + L +A+ L + T Sbjct: 285 DLEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVE 344 Query: 343 ---SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASA 389 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 345 LVKELDGFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELT 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +L I K+ + + IE+L+Q+R K K+F AD IR+QL G +LED + Sbjct: 405 GVLNIVNKKK--DTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTR--- 459 Query: 450 NGQRMTRWKQ 459 + +WK+ Sbjct: 460 ---QGVKWKR 466 >gi|126697618|ref|YP_001086515.1| cysteinyl-tRNA synthetase [Clostridium difficile 630] gi|122974209|sp|Q18CD5|SYC_CLOD6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 468 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 177/490 (36%), Positives = 259/490 (52%), Gaps = 57/490 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y Sbjct: 2 MSVKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII R+ +E + + +K +++ D L T Sbjct: 62 D--VTYVQNFTDVDDKIINRSHEE------GISPEEVAAKYIKEYFVDCDGLGIKRATVH 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+ T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 114 PQVTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL F Sbjct: 174 DQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 234 PHHENEIAQSEARSG-KTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------------- 342 ++R ML HYR P++F+ + L +A+ L + T Sbjct: 286 DLEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVE 345 Query: 343 ---SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASA 389 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 346 LVKELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELT 405 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +L I K+ + + IE+L+Q+R K K+F AD IR+QL G +LED + Sbjct: 406 GVLNIVNKKK--DTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTR--- 460 Query: 450 NGQRMTRWKQ 459 + +WK+ Sbjct: 461 ---QGVKWKR 467 >gi|284006809|emb|CBA72076.1| cysteinyl-tRNA synthetase [Arsenophonus nasoniae] Length = 504 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 189/486 (38%), Positives = 265/486 (54%), Gaps = 50/486 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL R+ EF+ I P I MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 41 SMLKIYNTLSRQKEEFRPITPGKIGMYVCGVTIYDLCHIGHGRTFVAFDVISRYLRYLGY 100 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + +TYVRNITD+DDKII+RA + N+ +TS+ + KD L L P + Sbjct: 101 D--LTYVRNITDVDDKIIKRAAEN------NETCDALTSRMLIEMYKDFDALNILRPDFE 152 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P AT+HI ++I L + ++ GHAY A+ +++F +S P+YG SR+ +++ + G RV Sbjct: 153 PNATHHIKEIIALTERLLKRGHAYIADNGDVMFAINSDPDYGLLSRQDLEQLQAGARVEV 212 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+ Sbjct: 213 ADVKRNPLDFVLWKMSKPNEPSWSSPWGDGRPGWHIECSAMNGKQLGEHFDIHGGGADLM 272 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA+ N W+H G + ++ KMSKS NF TI ++L Sbjct: 273 FPHHENEIAQSTCANDG-PYVNYWMHTGMVMVDREKMSKSLNNFFTIRDVLA-------H 324 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 + A +R +L HYR +++T + L +A L + S I Sbjct: 325 YDAETVRYFLLSGHYRSQLNYTEENLKQARTSLERLYTALRDTDANHVKSADNEIFKQRF 384 Query: 352 LSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGI------EVC 397 ++A+ +D NT A L LARE + ++L A+ILG+ + Sbjct: 385 MAAMNDDFNTPEAYSVLFDLAREINRLKVDDMAMANELAVQLRQLANILGLLTQNPEQFL 444 Query: 398 KEHLNKNISIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + + S IE L+++R K K ++ AD R +L G ILED + Sbjct: 445 QSRAQVSHSAEIEKIEALIKQRNDARKNKFWAQADSARDELTRMGIILEDS------PQG 498 Query: 455 TRWKQK 460 T W++K Sbjct: 499 TVWRRK 504 >gi|255099211|ref|ZP_05328188.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-63q42] gi|255304994|ref|ZP_05349166.1| cysteinyl-tRNA synthetase [Clostridium difficile ATCC 43255] gi|328887507|emb|CAJ66866.2| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Clostridium difficile] Length = 465 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 259/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 1 MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E + + +K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIINRSHEE------GISPEEVAAKYIKEYFVDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 173 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQSEARSG-KTFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------------------- 342 ++R ML HYR P++F+ + L +A+ L + T Sbjct: 285 EIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVELV 344 Query: 343 -SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + A+ +D+NT A+ + +LA+ N D L FN + Sbjct: 345 KELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I K+ + + IE+L+Q+R K K+F AD IR+QL G +LED + Sbjct: 405 LNIVNKKK--DTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTR----- 457 Query: 452 QRMTRWKQ 459 + +WK+ Sbjct: 458 -QGVKWKR 464 >gi|90407713|ref|ZP_01215892.1| cysteinyl-tRNA synthetase [Psychromonas sp. CNPT3] gi|90311182|gb|EAS39288.1| cysteinyl-tRNA synthetase [Psychromonas sp. CNPT3] Length = 460 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF + + MYVCG T+YD HIG+ R + FD + R LR+ + Sbjct: 2 LKIYNTLSKQKEEFTPLVAGKVSMYVCGVTIYDNCHIGHGRTFVAFDSVVRYLRFKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + ++RNITD+DDKII+RA + N++ +T++ T+ +D L L P +PR Sbjct: 61 -LNFIRNITDVDDKIIKRANEN------NESCDALTARFTKAMHRDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+P +I +I+ +I HAY A N +++F SS YG S + +D + G RV + Sbjct: 114 VTEHMPDVIAMIKTLIEKQHAYVASNGDVLFSVSSFDGYGKLSGQNLDMLQAGARVDVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK S EP WESPWG GRPGWHIECSAMS +LG +FDIHGGG DL FP Sbjct: 174 SKHDPLDFVLWKMSKENEPSWESPWGAGRPGWHIECSAMSFKHLGPIFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA AN W+H+G + ++ KMSKS NF TI ++LE ++ Sbjct: 234 HHENEIAQSCCAHDA-TYANTWMHSGMVQVDKVKMSKSLNNFFTIKDVLE-------AYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVLS 353 A +R ++ HYR ++++ L +A L + I D A Sbjct: 286 AESVRYFLISGHYRSQLNYSEDNLKQARASLERLYTALRDVDISDAPIAKDNSHYQAFCK 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGI------EVCKE 399 A+ +D NT A+ L +LA+ K +L + ++LG+ + + Sbjct: 346 AMDDDFNTPEALAVLFELAKALNKAKLSADKSAPELALLLRTLGNVLGLLDQSADDFLQG 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+++R K ++SAD R QL + +LED G T W++ Sbjct: 406 DESSAEVEKIELLIKQRNDARANKDWASADDARAQLSALNIVLED------GANGTTWRK 459 Query: 460 K 460 + Sbjct: 460 Q 460 >gi|92117041|ref|YP_576770.1| cysteinyl-tRNA synthetase [Nitrobacter hamburgensis X14] gi|123083715|sp|Q1QN87|SYC_NITHX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91799935|gb|ABE62310.1| cysteinyl-tRNA synthetase [Nitrobacter hamburgensis X14] Length = 482 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 248/480 (51%), Positives = 316/480 (65%), Gaps = 25/480 (5%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL ++ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLL++ YG Sbjct: 1 MELRLYDTLTKEKRAFIPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLQHIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKI +RA ++ P +P+N+AI +T K +QF D L CL PTHQ Sbjct: 61 TDHVTYVRNITDVDDKINDRAARDFPGLPLNEAIRKVTEKTAEQFQADVAALGCLPPTHQ 120 Query: 123 PRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT + M+ LI+ +I GHAYEA E++FD S+P+YG+ S R+++EQK Sbjct: 121 PRATEFVLPRDDGRADMVTLIKQLIARGHAYEAGGEVLFDVQSMPDYGALSGRRLEEQKA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G RV HK+NPADF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHG Sbjct: 181 GARVAVDAHKRNPADFVLWKLSSENEPGWDSPWGRGRPGWHIECSAMSAAYLGDVFDIHG 240 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF TINELL T+ Sbjct: 241 GGLDLIFPHHENEIAQSRCAHGTHTMANYWMHNGFLQVEGEKMSKSLGNFFTINELLTTE 300 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK----GIIDPAV 351 KFGGR WP V+RLAML THYR PID+TV L E++ +L W G +D V Sbjct: 301 KFGGRKWPGEVLRLAMLKTHYRSPIDWTVDALEESKRILDSWYDIVGDDTEAIGEVDREV 360 Query: 352 LSALYNDLNTVSAIQALHKLA-----RESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 + L +DLNT +A+ LH +A + D SA +LG+ +E+L + Sbjct: 361 SAFLGDDLNTSAAVTRLHAIAASRIGKSGQLQIDAKRKLKVSAVMLGLLGRTKREYLETD 420 Query: 405 ------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 S + L+ +R K F +D IR +L + G +L+D K+ D T W+ Sbjct: 421 PQVILVDSNLVAHLLSDRAAARARKDFKESDRIRDELAAMGVVLKDGKDADGKPE-TTWE 479 >gi|292487539|ref|YP_003530411.1| cysteine tRNA synthetase [Erwinia amylovora CFBP1430] gi|291552958|emb|CBA20003.1| cysteine tRNA synthetase [Erwinia amylovora CFBP1430] Length = 502 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 188/485 (38%), Positives = 253/485 (52%), Gaps = 49/485 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY Sbjct: 40 SMLKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGY 99 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + + YVRNITDIDDKII+RA + ++I +T + + KD L L P + Sbjct: 100 Q--LNYVRNITDIDDKIIKRAHEN------GESIEQLTQRMIGEMHKDFAALNILPPDLE 151 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI ++I L++ +I HAY A N +++F S YGS SR+ +D+ + G RV Sbjct: 152 PRATRHIAEIIELVEKLIAREHAYVASNGDVMFSVDSDLQYGSLSRQDLDQLQAGARVEV 211 Query: 182 KYH-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 212 TADVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDL 271 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A N W+H+G + ++ KMSKS NF T+ ++LE Sbjct: 272 MFPHHENEIAQSTSAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLE------- 323 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAV 351 + A +R ++ HYR +++ L +A L + T + Sbjct: 324 HYDAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFEARF 383 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH--- 400 +A+ +D NT A AL LARE + L +LG+ Sbjct: 384 RAAMDDDFNTPEAYSALFDLAREVNRMKAENPAAVDGLAARLRVLGGVLGLLEQDPEQFL 443 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +N IE L+Q R+ K K ++ AD R +L G +LED G T Sbjct: 444 QSGANVNDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGT 497 Query: 456 RWKQK 460 RW++K Sbjct: 498 RWRRK 502 >gi|253995884|ref|YP_003047948.1| cysteinyl-tRNA synthetase [Methylotenera mobilis JLW8] gi|253982563|gb|ACT47421.1| cysteinyl-tRNA synthetase [Methylotenera mobilis JLW8] Length = 466 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 192/484 (39%), Positives = 268/484 (55%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 LKIYNTLAREKQTFTPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVSRWLRASGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TDIDDKII+RA + N+ I+ +T + +D+ +L L P +P+ Sbjct: 61 -VTYVRNVTDIDDKIIKRANEN------NETIAQLTQRFIDAMDEDSAKLGVLRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M+ +I +I G AY A N ++ + SS YG S + +++ + G RV Sbjct: 114 ATEFVDGMLSMIAALIDKGFAYPAANGDVFYSVSSFQGYGKLSGKSLEDLRAGERVEVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP WESPWG+GRPGWHIECSAMSSH+LG+ FDIHGGG DL FP Sbjct: 174 FKKDPMDFVLWKAAKPGEPSWESPWGKGRPGWHIECSAMSSHHLGQHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIE----KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 HHENEIAQS A + + N W+HNGF+ ++ KMSKS GNF TI +LE Sbjct: 234 HHENEIAQSEAAHSHDGKPCQMVNYWMHNGFVRVDDEKMSKSLGNFFTIRTVLE------ 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------- 350 + A VIR +L HYR P++++ Q L +A++ L++ + D A Sbjct: 288 -QYDAEVIRFFILRAHYRSPLNYSDQHLNDAKLALTRLYTALRGVDVSDDAIDWQHPYAA 346 Query: 351 -VLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCK--EHLNK-- 403 A+ +D NT A+ L LA E K + + A +LG+ K E L Sbjct: 347 RFKLAMDDDFNTPEAMAVLFDLANEVNKTKSTEAAGLLKGLASVLGLLSRKSDEFLQAKT 406 Query: 404 ---------NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + ++ ++ +RL + K F+ AD IRK+L G ILED + Sbjct: 407 NANGAANDGAAELDVDAMIVKRLEAKQAKNFAEADRIRKELAEAGIILEDT------PQG 460 Query: 455 TRWK 458 T W+ Sbjct: 461 TTWR 464 >gi|254234889|ref|ZP_04928212.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa C3719] gi|126166820|gb|EAZ52331.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa C3719] Length = 460 Score = 587 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 256/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ +A+ Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRFYNALKGLPEAAPAEAAEYVERFAAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A L +LARE + + L A +LG+ + Sbjct: 346 DDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAFLQAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR +L + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLEARAAKNWAESDRIRDRLTAMGVVLEDGK------GGTTWR 457 >gi|295401941|ref|ZP_06811904.1| cysteinyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312109240|ref|YP_003987556.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] gi|294976071|gb|EFG51686.1| cysteinyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311214341|gb|ADP72945.1| cysteinyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] Length = 466 Score = 587 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 180/489 (36%), Positives = 259/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK F+ ++P+ ++MYVCGPTVY++ HIGNAR IVFD + R L + Sbjct: 2 SSIRLYNTLTRKKEPFEPLEPNKVKMYVCGPTVYNYIHIGNARAAIVFDTIRRYLEFRGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I+ AR+ + + + + + Q + +D T L C Sbjct: 62 E--VKYVSNFTDVDDKLIKAARE------LGEDVPTVAERFIQAYFEDITALGCKKADVH 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE + ++ + T YG S + IDE K G R+ Sbjct: 114 PRVTENMDTIIEFIQALVEKGYAYEVDGDVYYRTRKFAEYGKLSHQSIDELKAGARIEIG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 174 EKKEDPLDFALWKAAKEGEICWDSPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG+LN+ KMSKS GNF+ +++++ R Sbjct: 234 PHHENEIAQSEALTG-KPFAKYWLHNGYLNINNEKMSKSLGNFVLVHDII-------RQI 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIID---- 348 V+R ML HYR PI+++ + L A+ L + Q+ST+ D Sbjct: 286 DPQVLRFFMLSVHYRHPINYSEELLENAKKGLERLKTAYFNLKHRLQSSTNLTDDDEQWL 345 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A + + +D NT + I L +LA+++ H L Sbjct: 346 ARIQEQHEAFIREMDDDFNTANGIAVLFELAKQANLYLHEKNTSERVIHAFLRELEQLLD 405 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI + +E L L+Q+R K + F+ AD IR +L +K ILED Sbjct: 406 VLGITLQEEELLDEEIE---ALIQKRNEARKNRNFALADQIRDELRAKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|260681821|ref|YP_003213106.1| cysteinyl-tRNA synthetase [Clostridium difficile CD196] gi|260685418|ref|YP_003216551.1| cysteinyl-tRNA synthetase [Clostridium difficile R20291] gi|260207984|emb|CBA60138.1| cysteinyl-tRNA synthetase [Clostridium difficile CD196] gi|260211434|emb|CBE01534.1| cysteinyl-tRNA synthetase [Clostridium difficile R20291] Length = 467 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 177/490 (36%), Positives = 259/490 (52%), Gaps = 57/490 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y Sbjct: 1 MSVKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII R+ +E + + +K +++ D L T Sbjct: 61 D--VTYVQNFTDVDDKIINRSHEE------GISPEEVAAKYIKEYFVDCDGLGIKRATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+ T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 PQVTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL F Sbjct: 173 DQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 PHHENEIAQSEARSG-KIFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------------- 342 ++R ML HYR P++F+ + L +A+ L + T Sbjct: 285 DLEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVE 344 Query: 343 ---SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASA 389 + A+ +D+NT A+ + +LA+ N D L FN Sbjct: 345 LVKELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELT 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +L I K+ + + IE+L+Q+R K K+F AD IR+QL G +LED + Sbjct: 405 GVLNIVNKKK--DTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTR--- 459 Query: 450 NGQRMTRWKQ 459 + +WK+ Sbjct: 460 ---QGVKWKR 466 >gi|254973704|ref|ZP_05270176.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-66c26] gi|255091094|ref|ZP_05320572.1| cysteinyl-tRNA synthetase [Clostridium difficile CIP 107932] gi|255312749|ref|ZP_05354332.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-76w55] gi|255515509|ref|ZP_05383185.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-97b34] gi|255648602|ref|ZP_05395504.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-37x79] gi|306518726|ref|ZP_07405073.1| cysteinyl-tRNA synthetase [Clostridium difficile QCD-32g58] Length = 465 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 259/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF ++ ++MYVCGPTVY++ HIGNARP I+FD L R L Y + Sbjct: 1 MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFIIFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII R+ +E + + +K +++ D L T P+ Sbjct: 60 -VTYVQNFTDVDDKIINRSHEE------GISPEEVAAKYIKEYFVDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I I+ + G+AY N ++ FDT+ YG S +K ++ + G R+ Sbjct: 113 VTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARIEVNDQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS YLG+ DIH GG DL FPH Sbjct: 173 KRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQDLTFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + W+HNG++N+ KMSKS GNF T+ ++ + + Sbjct: 233 HENEIAQSEARSG-KIFSKYWMHNGYININDEKMSKSKGNFFTVRDI-------SKLYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------------------- 342 ++R ML HYR P++F+ + L +A+ L + T Sbjct: 285 EIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVELV 344 Query: 343 -SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + A+ +D+NT A+ + +LA+ N D L FN + Sbjct: 345 KELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAKKCLDEFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I K+ + + IE+L+Q+R K K+F AD IR+QL G +LED + Sbjct: 405 LNIVNKKK--DTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMGIVLEDTR----- 457 Query: 452 QRMTRWKQ 459 + +WK+ Sbjct: 458 -QGVKWKR 464 >gi|330975115|gb|EGH75181.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 460 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 261/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIDAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 TEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAAGLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDQITAMGVLLEDGK------GGTTWR 457 >gi|297537709|ref|YP_003673478.1| cysteinyl-tRNA synthetase [Methylotenera sp. 301] gi|297257056|gb|ADI28901.1| cysteinyl-tRNA synthetase [Methylotenera sp. 301] Length = 469 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 190/488 (38%), Positives = 270/488 (55%), Gaps = 54/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 LKIYNTLAREKQTFTPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVSRWLRSSGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + + +D+ +L + P +P+ Sbjct: 60 AVTYVRNITDIDDKIIKRANEN------GETIGQLTQRFIEAMDEDSAKLGIIRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I +I G AY A N ++ + ++ YG S + +++ + G RV Sbjct: 114 ATEFIDGMIQMISALIEKGFAYVAANGDVFYSVNNFEGYGKLSGKSLEDLRAGERVEVDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWG-----RGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 HKK+P DF+LWK P EP W+SP+G +GRPGWHIECSAMSSH+LG+ FDIHGGG Sbjct: 174 HKKDPMDFVLWKSVKPNEPSWDSPFGGPNGGKGRPGWHIECSAMSSHHLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIE----KTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI +LE Sbjct: 234 DLQFPHHENEIAQSEAAHSHNGEPCQMVNYWMHNGFVRVDDEKMSKSLGNFFTIRTVLE- 292 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---- 350 + A V+R +L HYR P++++ Q L +A++ L++ + + D A Sbjct: 293 ------KYDAEVVRFFILRAHYRSPLNYSDQHLDDAKLALTRLYTSLRGHVVADVAIDWQ 346 Query: 351 ------VLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGI-------- 394 A+ +D NT A+ L LA E K ++ + + A +LG+ Sbjct: 347 QPHSARFKEAMDDDFNTPEAMAVLFDLANEVNKTKSLEVAALLKSLAGVLGLLQRDADAF 406 Query: 395 ---EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 +V + + I I++LV +R K K F+ AD IRK+L G +LED Sbjct: 407 LQGDVAAQLAGTELKIDIDQLVIQRNEAKKTKNFAEADRIRKELADAGIVLEDT------ 460 Query: 452 QRMTRWKQ 459 T W++ Sbjct: 461 ALGTTWRK 468 >gi|326391118|ref|ZP_08212664.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992817|gb|EGD51263.1| cysteinyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 466 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 186/488 (38%), Positives = 255/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R E + ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y + Sbjct: 1 MKLYNTLSRTKEELEPLNDKIVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKEVAEKYIDEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL+FPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSETAY-EQPFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYNP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS----------- 353 V+RL MLM HYR PI+F++ + +A + + + Sbjct: 285 EVLRLFMLMAHYRSPINFSLDLMEQANSAYERLLNAVANLKHLANVCKDGGLNEEEKKLM 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ S N +L +F + + Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTSNANLSRNSSKKLVEYILDMFLKLSEV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + + I L++ER K K + AD IR +L KG ILED Sbjct: 405 LGLSY-RGVETELNDEEILALIEERQKARKEKNWKLADEIRDRLREKGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PEGVRWKR 465 >gi|292898782|ref|YP_003538151.1| cysteinyl-tRNA synthetase [Erwinia amylovora ATCC 49946] gi|291198630|emb|CBJ45738.1| cysteinyl-tRNA synthetase [Erwinia amylovora ATCC 49946] Length = 462 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 188/483 (38%), Positives = 253/483 (52%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T + + KD L L P +PR Sbjct: 61 -LNYVRNITDIDDKIIKRAHEN------GESIEQLTQRMIGEMHKDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A N +++F S YGS SR+ +D+ + G RV Sbjct: 114 ATRHIAEIIELVEKLIAREHAYVASNGDVMFSVDSDLQYGSLSRQDLDQLQAGARVEVTA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A N W+H+G + ++ KMSKS NF T+ ++LE + Sbjct: 234 PHHENEIAQSTSAHDG-PYVNYWMHSGMVMVDREKMSKSLNNFFTVRDVLE-------HY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLS 353 A +R ++ HYR +++ L +A L + T + + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFEARFRA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH----- 400 A+ +D NT A AL LARE + L +LG+ Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKAENPAAVDGLAARLRVLGGVLGLLEQDPEQFLQS 405 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +N IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 406 GANVNDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|304315919|ref|YP_003851064.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777421|gb|ADL67980.1| cysteinyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 464 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 190/488 (38%), Positives = 264/488 (54%), Gaps = 58/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF ++ + + MYVCGPTVY+F HIGNAR IVFD + R L Y + Sbjct: 1 MKIYNTLTRKKEEFVPLNDNIVNMYVCGPTVYNFIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I+R+ +E N + + + +++ KD L T PR Sbjct: 60 -VNYVQNFTDIDDKLIKRSHEE------NTTVKELADRYIEEYFKDADSLGIKRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I ++ +I G AY N ++ +DT+ YG S + IDE K G R+ Sbjct: 113 ATENIDDIINFVKKLIDKGFAYVLNGDVYYDTTKFKEYGKLSHKNIDELKAGARIEVNED 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK + EP W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPTDFVLWKAAKEGEPYWDSPWGKGRPGWHIECSTMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ E A W+H G+LN+ KMSKS NF T+ ++ + Sbjct: 233 HENEIAQSEAANDAE-FARFWMHIGYLNINNEKMSKSKNNFFTVRDITS-------QYDP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-KGIIDPA------------- 350 V+R ML +HYR PI+F+ L +++ + T + + ++D A Sbjct: 285 EVLRFFMLTSHYRNPINFSHDLLEQSKSGFLRLSNTVDNLRHLLDDALDRELSDEEKAYK 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++ R+ N D +L IF + + Sbjct: 345 EKYDEYKRRFEEAMDDDFNTADAISVLFEMVRDINTNIDGNSPKELIEYILDIFLKLSSV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI K L + I+KL+++R K K ++ AD IR +L+ +G LED Sbjct: 405 LGISYKKRDL---LDDEIKKLIEKREEARKAKNWAEADKIRDELKKQGIALEDT------ 455 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 456 PSGVRWKR 463 >gi|237745445|ref|ZP_04575925.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi|229376796|gb|EEO26887.1| cysteinyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] Length = 462 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 187/480 (38%), Positives = 267/480 (55%), Gaps = 45/480 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++IYN+L R F I+P +RMYVCG T+YD+ HIG+AR M+ FDV+YR L+ E Sbjct: 3 SLQIYNSLTRSKQVFTPIEPGKVRMYVCGMTIYDYCHIGHARMMMSFDVVYRWLKALGYE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKII RA + ++IS +T++ TQ +DT+ L L P H+P Sbjct: 63 --VTYVRNITDIDDKIINRAGEN------GESISSLTARFTQYMHEDTSALGILPPDHEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT ++P+M+ LI + +G AY++ + ++ + YG S + +D+ + G RV Sbjct: 115 RATEYVPEMLELIAKLEKNGLAYQSEDGDVNYSVRDFRGYGKLSGKSLDDLRAGERVDVN 174 Query: 183 YHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK + P EP W S WG GRPGWHIECSAMSS LG FDIHGGG D Sbjct: 175 TGKRDPLDFVLWKSAKPSEPDEAKWSSRWGAGRPGWHIECSAMSSKLLGDHFDIHGGGAD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 235 LQFPHHENEIAQSEGASG-HPFVNYWMHNGFVRVDNEKMSKSLGNFFTIRDVL------- 286 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------- 349 +++ A V+R ++ +HYR P++++ L +A L++ + D Sbjct: 287 KNYDAEVLRFFIIRSHYRSPLNYSDAHLDDARSALTRLYTALKDIDVQDKPVDWQEEHAV 346 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCKEH------- 400 A+ +D NT A+ L +LA E + H ++ A +LG+ Sbjct: 347 RFSRAMNDDFNTPEAVAVLFELANEVNRTHSVEVASQLKALGSVLGLLERDPRQFLQGNG 406 Query: 401 -LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +++N IE +Q R K + F+ AD IR +L KG +LED T W++ Sbjct: 407 TVDENEEKWIEAQIQARREAKKTRDFAKADKIRNELLEKGIVLEDKPGGK-----TEWRR 461 >gi|39935066|ref|NP_947342.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] gi|61216212|sp|Q6N8A7|SYC_RHOPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|39648917|emb|CAE27438.1| cysteine-tRNA ligase [Rhodopseudomonas palustris CGA009] Length = 463 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 225/467 (48%), Positives = 297/467 (63%), Gaps = 18/467 (3%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL R F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTLTRDKRPFTPIDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT + Sbjct: 61 EAHVKYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKM 175 PRAT HI +M +I+ ++ G AY + ++F S++ P YGS + R +DE Sbjct: 121 PRATEHIGEMRSIIEKLVAGGFAYVEQDHVLFSPSAMNAANGVLPRYGSLANRSLDEMIA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFD 232 G RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATPGRPGWHIECSAMSWKHLGETFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG+DL+FPHHENE+AQSCCA E+ A W+HNGFL +EG KMSKS GNFITI ELL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTERMAQTWMHNGFLQVEGEKMSKSLGNFITIRELL 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-DPAV 351 T KFGGRSW +RLAML THYR+PID+TV L EAE + W + + V Sbjct: 301 ATNKFGGRSWDGATLRLAMLKTHYRQPIDWTVDALHEAEKAILDWSDFAKDATPVRCDEV 360 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 ++AL +DLNT I LH L R + +LGI ++ + Sbjct: 361 IAALTDDLNTPKMIAELHALRRAG-----KADELRGAMQLLGINPVV-RAPVDLDATAKS 414 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 L++ R K + +D IR +L + G +L+D K+ D G+ +T W+ Sbjct: 415 LIEARTAARANKDWKESDRIRDELAAMGVVLKDGKDAD-GKSVTTWE 460 >gi|152989578|ref|YP_001348862.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PA7] gi|187629850|sp|A6V727|SYC_PSEA7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150964736|gb|ABR86761.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PA7] Length = 460 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 182/478 (38%), Positives = 256/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGRFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ +A+ Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRFYNALKGLPEAAPAEAAEHVERFAAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A L +LARE + D L A +LG+ + Sbjct: 346 DDDFNTAGACSVLFELAREVNRLRDSDLPAAAALAARLKQLAGLLGVLQLEPEAFLQAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|290476082|ref|YP_003468980.1| cysteine tRNA synthetase [Xenorhabdus bovienii SS-2004] gi|289175413|emb|CBJ82216.1| cysteine tRNA synthetase [Xenorhabdus bovienii SS-2004] Length = 460 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 180/481 (37%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHEGKVGMYVCGITIYDLCHIGHGRTFVAFDVIARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRN+TD+DDKII+RA N++ +T++ + D L P +PR Sbjct: 61 -LTYVRNVTDVDDKIIKRA------TENNESCDALTTRMLSEMHSDFDALNIQRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + + +I GHAY A+ +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATQHISEIIQITEELINRGHAYVADNGDVMFSIDTNPDYGLLSRQDLEQLQAGARVEIAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWESPWGVGRPGWHIECSAMNGKQLGQHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHGG-PYVNYWMHSGMVMVDKEKMSKSLSNFFTIRDVLG-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + T + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTALRGTDKSAQPTGSEAFEARFTEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A L +ARE + L A ILG+ + + Sbjct: 346 MNDDFNTPEAYSVLFDIAREINCLKTENLAAANGLAAELRKLAGILGLLEQEPEQFLQGG 405 Query: 401 LNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + +A IE L+++R K+++ AD R QL + LED G + T W++ Sbjct: 406 AHVDDDVAQIEALIKQRNDARTNKEWALADAARDQLNAMRIELED------GPQGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|295094035|emb|CBK83126.1| cysteinyl-tRNA synthetase [Coprococcus sp. ART55/1] Length = 463 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 196/486 (40%), Positives = 260/486 (53%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL R+ EF I+ + +YVCGPTVYD+ HIGNARPMIVFD L R L Y + Sbjct: 1 MKILNTLTRRKEEFVPINEGKVGIYVCGPTVYDYIHIGNARPMIVFDTLRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E S+I+ + + KD L T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANEE------GVDASVISERYIAEVKKDMAALNVREATTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT IP MI +++ +I G+AYE N + F T +YG S++ ID+ + G R V Sbjct: 113 ATEEIPDMIEMVKTLIEKGYAYEVNGTVYFRTRKFKDYGKLSKKNIDDLRSGNRDLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W SPWG GRPGWH+ECS MS Y+G V DIH GG DL+ Sbjct: 173 VDEKEDPLDFVLWKPKKEGEPSWPSPWGDGRPGWHLECSVMSKKYIGDVIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFL + KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGTE-FARYWMHNGFLKINNEKMSKSLGNFFTVREIAE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS-------KWPQTSTSKGIIDPAVL-- 352 +P VIR ML HYR P++F+ + ++ L + S ++G +D AV Sbjct: 285 YPLQVIRFFMLSAHYRSPLNFSADLVEASKNGLERILTAVDRLKSISGTEGEVDKAVADE 344 Query: 353 ---------SALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHILG 393 +A+ +DLNT AI + +L + + N +L ILG Sbjct: 345 MDAFVKKYEAAMDDDLNTADAISVIFELVKYANVNVTEESTKATVELVLNTVTKLCDILG 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I E + + IE L++ER K K F+ AD IR QL G ILED + Sbjct: 405 I--ITEKKKEILDSDIEALIEERQAARKAKNFARADEIRDQLSDMGIILEDTR------E 456 Query: 454 MTRWKQ 459 +WK+ Sbjct: 457 GVKWKR 462 >gi|13476470|ref|NP_108040.1| cysteinyl-tRNA synthetase [Mesorhizobium loti MAFF303099] gi|21264021|sp|Q984X8|SYC_RHILO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|14027231|dbj|BAB54185.1| cysteine-tRNA ligase [Mesorhizobium loti MAFF303099] Length = 477 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 256/475 (53%), Positives = 329/475 (69%), Gaps = 19/475 (4%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +++YNTL R T+F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 5 SQGLRLYNTLTRAKTDFVPIDALNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLY 64 Query: 62 GEKCVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLA 115 G+ VTYVRNITD+DDKI RA + +N+AI +T K QF +D L Sbjct: 65 GQAHVTYVRNITDVDDKINARALRDFGSEISAGKLSLNEAIRRVTEKTADQFHRDVATLG 124 Query: 116 CLAPTHQPRATNHIP-------QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR 168 CL PT +PRAT + MI LIQ++I GHAY A E++FDT+S+P+YG S+R Sbjct: 125 CLEPTVEPRATEFVEPRADGKADMITLIQSLIKRGHAYAAAGEVLFDTASMPDYGQLSKR 184 Query: 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 +DEQ+ G RV HKKNP DF+LWK S+P EPGW+SPWGRGRPGWHIECSAMS+ YLG Sbjct: 185 NLDEQQAGARVAVDAHKKNPGDFVLWKLSSPEEPGWQSPWGRGRPGWHIECSAMSAAYLG 244 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 +VFDIHGGGLDLIFPHHENEIAQS CA AN+W+HNGFL +EG+KMSKS GNF +I Sbjct: 245 EVFDIHGGGLDLIFPHHENEIAQSRCAHGTSVMANVWMHNGFLQVEGQKMSKSLGNFYSI 304 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKG 345 +ELLET+ FGGRSWP V+RLAMLMTHYREPIDF+V++L EAE L KW + + + G Sbjct: 305 HELLETETFGGRSWPGEVLRLAMLMTHYREPIDFSVRKLEEAENTLRKWKRAADLAPAAG 364 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNI 405 + V+ AL +DL T +A Q L +LA E+ ++ AS LG +V ++++ Sbjct: 365 QLPVEVIDALSDDLATYAAFQVLTQLAGEAADGNEAAAALKASLLFLGFDVASADIDEDG 424 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + K + RL L+ K ++ AD IR +L ++G L+D K+P G+R+T W+ K Sbjct: 425 ---VAKAIANRLALIAAKNWTEADRIRDELLAQGVQLKDGKDPVTGERITTWEVK 476 >gi|116049743|ref|YP_791450.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] gi|296389817|ref|ZP_06879292.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa PAb1] gi|122258854|sp|Q02KT6|SYC_PSEAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115584964|gb|ABJ10979.1| cysteinyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] Length = 460 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 257/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------DEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ +A+ Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRFYNALKGLPEAAPAEAAEYVERFAAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A L +LARE + + L A +LG+ + Sbjct: 346 DDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAFLQAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLEARAAKNWAESDRIRDQLTAMGVVLEDGK------GGTTWR 457 >gi|107101226|ref|ZP_01365144.1| hypothetical protein PaerPA_01002258 [Pseudomonas aeruginosa PACS2] Length = 460 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 256/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + + +RMYVCG TVYD+ H+G+ R M+ FDV+ R LR+ + Sbjct: 2 LQIYNTLSKTKEVFTPLVGNQVRMYVCGMTVYDYCHLGHGRSMVAFDVITRWLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + ++T + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GEPFDVLTERMIAAMHEDEARLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SRR++++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQILIDKGYAYAPGNGDVYYRVGKFAGYGKLSRRRVEDLRIGARIEPGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 174 AKEDPLDFVLWKGAKPGEPSWSSPWGEGRPGWHIECSVMSTCCLGDSFDIHGGGNDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + A W+H G + + G KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEAATG-KPYAKSWLHCGMITINGEKMSKSLGNFFTIREVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R ++ +HYR PI+++ + L EA+ L ++ +A+ Sbjct: 286 PEVVRYLLIASHYRSPINYSEENLREAKAALDRFYNALKGLPEAAPAEAAEYVERFAAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D NT A L +LARE + + L A +LG+ + Sbjct: 346 DDDFNTAGACSVLFELAREVNRLRESDLSAAAALAARLKQLAGLLGVLQLEPEAFLQAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR +L + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLEARAAKNWAESDRIRDRLTAMGVVLEDGK------GGTTWR 457 >gi|56961911|ref|YP_173633.1| cysteinyl-tRNA synthetase [Bacillus clausii KSM-K16] gi|61216140|sp|Q5WLT3|SYC_BACSK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56908145|dbj|BAD62672.1| cysteinyl-tRNA synthetase [Bacillus clausii KSM-K16] Length = 466 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 170/486 (34%), Positives = 249/486 (51%), Gaps = 54/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N+L K F I+ ++MY CGPTVY++ HIGNARP IV+D++ R L Y + Sbjct: 2 IKLFNSLTNKKEPFVPIEEGKVKMYCCGPTVYNYIHIGNARPPIVYDMVRRYLTYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V N TD+DDKII A + + + ++ + + + + DT L PR Sbjct: 61 -VTFVSNFTDVDDKIIRAANE------LGEEVAAVAERFIKAYYADTCALNVKEADLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I ++ G AYEA ++ F T YG S + +D+ + G R+ Sbjct: 114 VTETMDDIIAFIADLEKKGFAYEAGGDVYFRTRKFNGYGKLSGQALDDLQSGARIEVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P E W SPWG GRPGWHIECSAM LG DIH GG DL FPH Sbjct: 174 KEDPLDFVLWKAAKPNEISWSSPWGEGRPGWHIECSAMIKKSLGDTIDIHAGGKDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS +K AN W+HNGF+N+ KMSKS GNF+ ++++ + + Sbjct: 234 HENEIAQSEALTG-KKLANYWMHNGFVNINNEKMSKSLGNFVLAHDII-------QQYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 V+R ML HYR PI+F+ + L AE L + T + Sbjct: 286 EVVRFFMLTAHYRTPINFSDELLKGAEAGLERLKNTVANLQHRLAETADMGAEEEWLEKI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D N+ +AI L LA+E+ + L +F +LG Sbjct: 346 AGAKQRFIEEMDDDFNSANAISVLFDLAKEANIYMSEAQTSKKVLNAFLELFAEFGEVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + ++ + + IE L++ER + K + F+ AD IR L+ K +LED + Sbjct: 406 VSFTQQE-EELLDAEIEALIEERNVARKERNFARADEIRDLLKEKNIVLEDT------PQ 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKR 464 >gi|296447282|ref|ZP_06889211.1| cysteinyl-tRNA synthetase [Methylosinus trichosporium OB3b] gi|296255244|gb|EFH02342.1| cysteinyl-tRNA synthetase [Methylosinus trichosporium OB3b] Length = 485 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 234/488 (47%), Positives = 301/488 (61%), Gaps = 43/488 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF+ IDP+N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR YG + Sbjct: 8 LKLYNTLTRVKEEFRPIDPANVRMYVCGPTVYDYAHIGNARPLIVFDVLFRLLRQLYGAE 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI RA + +I +T F D L CL P+ QPR Sbjct: 68 HVTYVRNITDVDDKINARAAER------GISIRELTEGTNAIFQADVAALGCLPPSVQPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QMI L++ +I GHAY A+ ++FD S+ +YG SRR +DE G RV + Sbjct: 122 ATEHIAQMIALVEKLIASGHAYAADGHVLFDVPSMADYGRLSRRPLDEMIAGARVDVAPY 181 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ DF+LWK S EPGW+SPWGRGRPGWH+ECSAMS +LG+ FDIHGGG+DL+FPH Sbjct: 182 KRGDMDFVLWKPSKDSEPGWDSPWGRGRPGWHLECSAMSWKHLGETFDIHGGGIDLVFPH 241 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA E AN W+HNGFL +EG KMSKS GNF+TI+ELL T+ FGGR WP Sbjct: 242 HENEIAQTRCAFGHEVMANYWMHNGFLQVEGEKMSKSLGNFVTIHELLHTENFGGRKWPG 301 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----------SKGIIDPAVLSA 354 V+RLAML THYR+PIDFTV+ L EAE L +W + G + A + Sbjct: 302 EVLRLAMLRTHYRQPIDFTVKALEEAERTLLRWRRFVELALSLDDDISDFGPLPSAFMEY 361 Query: 355 LYNDLNTVSAIQALHKLAR-----------ESTKNHDLLPIFNASAH-----------IL 392 L +DLNT +A+ +H+LAR EST + A+ IL Sbjct: 362 LADDLNTPAALSRIHELARVGPTAALEWGEESTAASPVEQQIAAARLRAALSLLGLQTIL 421 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + +++ S I++L++ R K ++ +D IR L + G L+D K+ Sbjct: 422 DPAWQRSSVDEAESDKIKELIERRRTARATKNWAESDRIRDALAAMGVALKDNKDGT--- 478 Query: 453 RMTRWKQK 460 T W+ K Sbjct: 479 --TTWEVK 484 >gi|317497616|ref|ZP_07955934.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895175|gb|EFV17339.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 467 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 194/484 (40%), Positives = 258/484 (53%), Gaps = 53/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + P + MYVCGPTVY++ HIGNARPMI+FD + R Y E Sbjct: 1 MKIYNTLTRQKEEFVPVHPGKVGMYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I + ++ +D L THQPR Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVTATEIAERYIKECKQDMEALNIKPATHQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I GHAYE + + F T S +YG S++ ID+ + G R V Sbjct: 113 ATEEIGGMIKMIQTLIKKGHAYEVDGTVYFKTRSFKDYGKLSKKNIDDLEAGHREIKVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + KK+P DF+LWK E W+SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKKDPLDFVLWKPKKEGEIAWDSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + EK AN W+HNGFLN+ +KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEACNG-EKFANYWMHNGFLNINNKKMSKSAGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-------------------- 341 +P VIR ML HYR P++F+ + A+ L + Sbjct: 285 YPLQVIRFFMLSAHYRTPLNFSDTLVESAKTGLDRILTAIDLCREMAAKEETGSLSKEET 344 Query: 342 ---TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASA 389 + ++ A+ +D NT A+ A+ ++ RES +L + Sbjct: 345 EHFANIEVLVKKFEDAMEDDFNTADAVSAIFEIVRESNSTVKDFSADYAKKILKVLEDLC 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LGIE KE + I KL++ER K K F+ AD IR QL +G +L+D + Sbjct: 405 SVLGIETTKEEEILDEEIE--KLIEERQAARKNKDFARADEIRDQLLEQGIVLKDTREGV 462 Query: 450 NGQR 453 R Sbjct: 463 KWSR 466 >gi|78221284|ref|YP_383031.1| cysteinyl-tRNA synthetase [Geobacter metallireducens GS-15] gi|109894903|sp|Q39ZL8|SYC_GEOMG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78192539|gb|ABB30306.1| cysteinyl-tRNA synthetase [Geobacter metallireducens GS-15] Length = 485 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 199/507 (39%), Positives = 258/507 (50%), Gaps = 71/507 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL EF + P + MYVCG TVYD HIG+AR +VFD++YR LR+ Sbjct: 1 MSLRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN TD+DDKII RA QE I+ + +F +D L PTHQ Sbjct: 61 D--VTYVRNYTDVDDKIINRANQEGVPYN------AISERFIAEFDRDMAALGLDLPTHQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +MI +I +I G AY A+ ++ F Y S+R +DE + G R+ Sbjct: 113 PKATEHIAEMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP WESPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+F Sbjct: 173 EKKRHPMDFALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A+ + A+ WIHNGF+N+ KMSKS GNF TI E+LE + Sbjct: 233 PHHENEIAQSEAANG-KPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLE-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 A V+R +L HYR PIDF+ Q L EAE L + T Sbjct: 285 DAEVLRFFLLSAHYRSPIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEETDRE 344 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTK----------NHDLLPI----F 385 A+ +D NT A+ + L R + + N LL Sbjct: 345 LAEKAVTFPERFREAMDDDFNTAQALGFVFDLVRSANRVLGEGKGGGSNRALLAEARDRI 404 Query: 386 NASAHILGIEVCKEHLNKN------------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LGI + + IE+L+ ER+ + F AD IR Sbjct: 405 RKVGAVLGIFTSEPRAFAERLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRD 464 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 L +KG +L D + T WK K Sbjct: 465 SLAAKGIMLLDS------PQGTTWKVK 485 >gi|313499077|gb|ADR60443.1| CysS [Pseudomonas putida BIRD-1] Length = 460 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 253/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D T A L L RE + D L +LG+ + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDVEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEGLIQARLQARADKNWAESDRIRDQLTAMGVVLEDSK------GTTTWR 457 >gi|18977396|ref|NP_578753.1| cysteinyl-tRNA synthetase [Pyrococcus furiosus DSM 3638] gi|18893083|gb|AAL81148.1| cysteinyl-tRNA synthetase [Pyrococcus furiosus DSM 3638] Length = 483 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 184/498 (36%), Positives = 255/498 (51%), Gaps = 62/498 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +K+YNTL ++ EF+ + ++MYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 5 KNMLKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKG 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V V N TDIDDKII+RAR+ + + + + F++D L Sbjct: 65 Y--TVLMVMNFTDIDDKIIKRARE------TGEDPKELAERFIKIFLEDMEALKVKPADI 116 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PR T+HI +I I + G+AYE ++ I F+ P YG S KI++ + G RV Sbjct: 117 YPRVTDHIDDIIEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEP 176 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLI Sbjct: 177 GEGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLI 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS E W+H GF+ ++G KMSKS GNF+TI ELL + Sbjct: 237 FPHHENEIAQSEACFGHE-WVKYWLHTGFVMVKGEKMSKSLGNFVTIRELL-------KR 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------------- 347 + VIR +L HYR P+++T + L A+ L + T + + Sbjct: 289 YEPEVIRFFVLQKHYRSPLEYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWGELE 348 Query: 348 ----------DPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIF 385 A+ +D NT A++A+ ++A K L F Sbjct: 349 FKTYEIIREGKRKFYEAMDDDFNTAEALKAVFEVANAINKYLTEANKPKESILRKALEFF 408 Query: 386 NASAHILGIE----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + + G+ + + IE LV+ R L K K++ AD IR++L+ G Sbjct: 409 KIVSEVFGVFEDYFREETKEREESEKLIELLVEVRKQLRKEKRYELADMIREELKKLGIQ 468 Query: 442 LEDYKNPDNGQRMTRWKQ 459 LED + T WK+ Sbjct: 469 LEDRGS------ETTWKR 480 >gi|148548000|ref|YP_001268102.1| cysteinyl-tRNA synthetase [Pseudomonas putida F1] gi|187629852|sp|A5W458|SYC_PSEP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148512058|gb|ABQ78918.1| cysteinyl-tRNA synthetase [Pseudomonas putida F1] Length = 460 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 252/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTRCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D T A L L RE + D L +LG+ + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDPEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEGLIQARLQARADKNWAESDRIRDQLTAMGVVLEDSK------GTTTWR 457 >gi|289579166|ref|YP_003477793.1| cysteinyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] gi|289528879|gb|ADD03231.1| cysteinyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] Length = 466 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 187/488 (38%), Positives = 254/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EFQ ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y + Sbjct: 1 MKLYNTLSRTKEEFQPLNDKVVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKELAEKYIHEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +I I+ +I G+AY N + F+T+ YG S + I+E + G R+ Sbjct: 113 ATEHIEDIIEFIKILIDKGYAYVVNGNVYFETAKFKGYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWGRGRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGRGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSEALYG-QQFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS----------- 353 V+RL ML+ HYR PI+F++ + +A + + + Sbjct: 285 EVLRLFMLIAHYRNPINFSLDLMDQANSAYERLLNAVANLKHLFTVCKERELNEEEKRIV 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ + N +L +F + I Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTANINLSGNSSKELVKYILDMFLKLSEI 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + I L+++R K K + AD IR +L KG ILED Sbjct: 405 LGL-FYRSVKTDIDDEEILALIEKRQQARKEKNWKLADEIRDRLREKGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PEGVRWKR 465 >gi|167765721|ref|ZP_02437774.1| hypothetical protein CLOSS21_00209 [Clostridium sp. SS2/1] gi|167712594|gb|EDS23173.1| hypothetical protein CLOSS21_00209 [Clostridium sp. SS2/1] gi|291559857|emb|CBL38657.1| cysteinyl-tRNA synthetase [butyrate-producing bacterium SSC/2] Length = 467 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 193/484 (39%), Positives = 258/484 (53%), Gaps = 53/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + P + MYVCGPTVY++ HIGNARPMI+FD + R Y E Sbjct: 1 MKIYNTLTRQKEEFVPVHPGKVGMYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I + ++ +D L THQPR Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVTATEIAERYIKECKQDMEALNIKPATHQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I GHAYE + + F T S +YG S++ ID+ + G R V Sbjct: 113 ATEEIGGMIKMIQTLIKKGHAYEVDGTVYFKTRSFKDYGKLSKKNIDDLEAGHREIKVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK E W+SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKEDPLDFVLWKPKKEGEIAWDSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + EK AN W+HNGFLN+ +KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEACNG-EKFANYWMHNGFLNINNKKMSKSAGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS-------------------- 341 +P VIR ML HYR P++F+ + A+ L + Sbjct: 285 YPLQVIRFFMLSAHYRTPLNFSDTLVESAKTGLDRILTAIDLCREMSAKEETGSLSKEET 344 Query: 342 ---TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASA 389 + ++ A+ +D NT A+ A+ ++ RES +L + Sbjct: 345 EHFANIEVLVKKFEDAMEDDFNTADAVSAIFEIVRESNSTVKDFSADYAKKILKVLEDLC 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LGIE KE + I KL++ER K K F+ AD IR QL +G +L+D + Sbjct: 405 SVLGIETTKEEEILDEEIE--KLIEERQAARKNKDFARADEIRDQLLEQGIVLKDTREGV 462 Query: 450 NGQR 453 R Sbjct: 463 KWSR 466 >gi|222530216|ref|YP_002574098.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] gi|254765173|sp|B9MMM6|SYC_ANATD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|222457063|gb|ACM61325.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 465 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 251/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E + + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKE------GITVFELAERFIQEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------QTSTS 343 +RL ML HYR+P++F++ + +AE+ L + + + Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDKLKAA 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + ILGI Sbjct: 345 IEELKAKFIDAMEDDLNTAEATGYLFEMVREINTYANSCSKETLTFAKDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I I +LV++R K K F+ AD IR +L+S G+I+ D +R+ Sbjct: 405 LEQYSAKEEAIPQQILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLDTPQGTKIERI 464 >gi|114330220|ref|YP_746442.1| cysteinyl-tRNA synthetase [Nitrosomonas eutropha C91] gi|122314719|sp|Q0AJJ4|SYC_NITEC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114307234|gb|ABI58477.1| cysteinyl-tRNA synthetase [Nitrosomonas eutropha C91] Length = 467 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 185/488 (37%), Positives = 266/488 (54%), Gaps = 54/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+TL R EF + P ++MYVCG TVYD H+G+AR ++VFD + R L+ E Sbjct: 2 LKIYDTLTRSRREFIPLTPGKVKMYVCGMTVYDHCHLGHARVLVVFDSVVRWLQTLDYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + H + +T++ Q +D L ++P+ +PR Sbjct: 61 -VTYVRNITDIDDKIIRRALENH------EPFGALTARYIQAMEEDAAALGIISPSFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I M+ +I++++ G AY AN ++ +D P YG S + +D+ + G RV Sbjct: 114 ATECIESMVTMIESLLSKGLAYVANNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAMS HYLG+ FDIHGGG DL FP Sbjct: 174 NKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSGHYLGERFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS N W+HNGF+ ++ KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSEGVHG-HPHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLAR-------YQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------------------K 344 V+R ++ HYR P++++ L +A L + + Sbjct: 286 PEVVRFFIVRAHYRSPLNYSDAHLNDARNALERLYTALKNHAPSQAQAAEEATATIDWVN 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGIEVCK---- 398 ++A+ +D NT A+ L LA E+ + N + A ILG+ Sbjct: 346 DGYAQRFMAAMNDDFNTPEAVAVLFDLASEANRTGNSHYASLLKALGGILGLLQQSPRQY 405 Query: 399 ------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + + IE+++Q+RL K K F+ AD +R+QL G ILED G Sbjct: 406 LQHPAHPQNDHHSIEEIERMIQQRLQARKEKNFAQADALRQQLAEAGIILED------GP 459 Query: 453 RMTRWKQK 460 + T W+++ Sbjct: 460 QGTTWRRQ 467 >gi|57640379|ref|YP_182857.1| cysteinyl-tRNA synthetase [Thermococcus kodakarensis KOD1] gi|68735029|sp|Q5JD45|SYC_PYRKO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57158703|dbj|BAD84633.1| cysteinyl-tRNA synthetase [Thermococcus kodakarensis KOD1] Length = 476 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 185/495 (37%), Positives = 250/495 (50%), Gaps = 60/495 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKIYNTL R+ EF+ + +RMYVCGPTVYD+ HIG+AR I FDV+ R L + Sbjct: 1 MGIKIYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYTHIGHARTYIAFDVIRRYLEHKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII+RA + + + K + F++D L Sbjct: 61 --TVLMVMNFTDIDDKIIKRANE------TGEDPKELAEKFLKYFLEDMKALKVKPADIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HI +I I+ + G+AYE ++ + F+ +YG S+ K+++ G RV Sbjct: 113 PRVTEHIQDIIDFIRKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKVKLEDLVKGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK++ P EP WESPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIF Sbjct: 173 EGKKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ E W+H GFL + G KMSKS GNF+TI E LE + Sbjct: 233 PHHENEIAQTEACTGHE-WVRYWMHTGFLMVNGEKMSKSLGNFVTIREALER-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L HYR P+D+T + L A+ L + T + + Sbjct: 285 DPEVIRLFVLQRHYRSPLDYTEEGLEHAKNNLERLYNTLENIRVAMERAEISFKWGEEEF 344 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFN 386 A+ +D NT A++A+ +++ + F Sbjct: 345 EAYEAIRDGRKKFYDAMDDDFNTAEALKAVFEVSNAINRYLTQVEKPKESILRKAWEFFK 404 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + GI + +E I+ L+ R L K +KF AD IR +L + G LED Sbjct: 405 MVSEVFGIFEDYFREQKAGEEEALIKLLIDVRAQLRKERKFDLADKIRDELRNLGIQLED 464 Query: 445 YKNPDNGQRMTRWKQ 459 + T WK+ Sbjct: 465 T------PQGTVWKR 473 >gi|317126835|ref|YP_004093117.1| cysteinyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] gi|315471783|gb|ADU28386.1| cysteinyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] Length = 466 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 179/489 (36%), Positives = 268/489 (54%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL RK+ FQ I+ + MYVCGPTVY++ HIGNARP +VFD++ R L+Y Sbjct: 1 MTIQVYNTLSRKVEPFQPIEEGKVSMYVCGPTVYNYIHIGNARPAVVFDMVRRYLQYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y+ N TD+DDKII+ A + + + + I + + + +DT L Sbjct: 61 E--VQYISNFTDVDDKIIKAAEE------MGEDVPTIAERFIEAYFEDTAALGVQKADKH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T +P++I I +I G+AYE+ ++ F T YG S + ID+ K+G+R+ Sbjct: 113 PRVTETMPEIIDFIARLIEKGYAYESQGDVYFRTRKFDGYGKLSHQSIDDLKLGSRIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + E W+SPWG GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 DKKEDPLDFVLWKSAKEGEIYWDSPWGNGRPGWHIECSAMVKKYLGDTIDIHAGGQDLSF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + +K AN WIHNG++N++ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSESLNG-KKMANYWIHNGYINIDNEKMSKSLGNFILVHDII-------KKY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 V+R ++ HYR PI+F+ ++LT A+ L + T + Sbjct: 285 DPEVVRFFIVNAHYRSPINFSDEQLTSAKSGLERIKTTYLNVKHRLSETANLGEDVEKWT 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAH 390 G+I L A+ +D N+ +A+ A+ L + + + ++ Sbjct: 345 KDMGVIHTRFLEAMDDDFNSANAVAAMFDLIKLGNLYLREDHTNKRVLEYFIKQLDDMSY 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + K+ + + IE L+QER+ K + F+ AD IR L+ + ILED Sbjct: 405 VLGLTLNKKE--EILDEEIEVLIQERIDARKNRNFARADEIRDLLKEQNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|259909186|ref|YP_002649542.1| Cysteinyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|224964808|emb|CAX56330.1| Cysteinyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|283479232|emb|CAY75148.1| cysteine tRNA synthetase [Erwinia pyrifoliae DSM 12163] Length = 462 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 189/483 (39%), Positives = 255/483 (52%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I NI MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGNIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESIERLTNRMIDEMHKDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I HAY A N +++F S P YGS SR+ +D+ + G RV Sbjct: 114 ATRHIAEIIELVEKLITREHAYVASNGDVMFSVDSDPQYGSLSRQDLDQLQAGARVEVAA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLSEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 PHHENEIAQSTCAHDG-PYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVL-------QHY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLS 353 A +R ++ HYR +++ L +A L + T + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTRATPAGGEEFEARFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEH----- 400 A+ +D NT A AL LARE + L +LG+ Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKGEDPAAADGLAARLRVLGGVLGLLEQDPQQFLQS 405 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +N IE L+Q R+ K K ++ AD R +L G +LED G TRW Sbjct: 406 GVNINDEEVAQIEALIQMRIDARKEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|312126760|ref|YP_003991634.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311776779|gb|ADQ06265.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 465 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 250/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E + + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKE------GITVFELAERFIQEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------------------TSTS 343 +RL ML HYR+P++F++ + +AE+ L + + Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDMLKAA 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + ILGI Sbjct: 345 IEDLKAKFIDAMEDDLNTAEATGYLFEMVREINTYANSCSKETLTFAKDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I I +LV++R K K F+ AD IR +L+S G+I+ D +R+ Sbjct: 405 LEQYSEKEEAIPQEILELVKKRNQARKAKNFAEADRIRDELKSLGYIVLDTPQGTKIERI 464 >gi|118578479|ref|YP_899729.1| cysteinyl-tRNA synthetase [Pelobacter propionicus DSM 2379] gi|171704442|sp|A1AK01|SYC_PELPD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118501189|gb|ABK97671.1| cysteinyl-tRNA synthetase [Pelobacter propionicus DSM 2379] Length = 493 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 190/510 (37%), Positives = 255/510 (50%), Gaps = 79/510 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + F + P MYVCG TVYD+ HIG+AR +VFDV+YR L Y Sbjct: 3 LRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGYSGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TDIDDKII RA QE + I+ + + F +D RL PT +P+ Sbjct: 61 AVTYVRNFTDIDDKIINRANQE------GVDYTTISERYIEAFNQDMARLGLAKPTVEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+H+ +I +I+ +I GHAYE++ ++ + S P+Y S R +++ G RV Sbjct: 115 ATDHMGGIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK S P EP W+SPWG GRPGWHIECSAMS YLGK FDIHGGG DL+FPH Sbjct: 175 KRNPMDFALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + W+HNGF+N+ KMSKS GNF TI E+LE + Sbjct: 235 HENEIAQSEAANGC-QFVRYWMHNGFVNINSEKMSKSLGNFFTIREVLE-------QYDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 +R +L HYR PIDF+ Q L +A+ L + + Sbjct: 287 ETLRFFILSAHYRSPIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPVEGAPLP 346 Query: 350 ---------------AVLSALYNDLNTVSAIQALHKLARESTK---------------NH 379 A+ +D NT A+ L + R + + Sbjct: 347 PAGAELHEKLQSLISRFREAMDDDFNTAQALGVLFEAVRATNRFMAESGDQTPATLALLG 406 Query: 380 DLLPIFNASAHILGI---------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSS 427 + +F + +LG+ E K+ + + I IE+L+ ER + F Sbjct: 407 QVRRLFAETGDVLGLFTSQPAAWLESIKQAKSDQMEISPQEIEQLIAERAAARTNRDFKR 466 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 D IR L KG L D + T W Sbjct: 467 GDEIRDLLLQKGIQLLDS------PQGTTW 490 >gi|188534564|ref|YP_001908361.1| Cysteinyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] gi|229558632|sp|B2VBD5|SYC_ERWT9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188029606|emb|CAO97484.1| Cysteinyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] Length = 462 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 189/483 (39%), Positives = 257/483 (53%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFAAFDVVARYLRYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA++ ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRAQEN------GESIEQLTNRMIGEMHKDFAALNILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +++ L++ +I HAY A N +++F S P YGS SR+ +D+ + G RV Sbjct: 114 ATRHITEIVELVEKLIAREHAYVASNGDVMFSVDSDPQYGSLSRQDLDQLQAGARVEVAA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK S EPGW SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+F Sbjct: 174 DVKRNPMDFVLWKMSKADEPGWASPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++LE + Sbjct: 234 PHHENEIAQSTCAHDG-PYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVLE-------HY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLS 353 A +R ++ HYR +++ L +A L + T + Sbjct: 286 DAETVRYFLMSGHYRSQLNYGEDNLNQARSALERLYIALRNTDTGATPAGGEEFETRFRE 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKE 399 A+ +D NT A AL LARE + L +LG+ + + Sbjct: 346 AMDDDFNTPEAYSALFDLAREVNRMKAEAPAAADGLAARLRVLGGVLGLLEQDPEQFLQS 405 Query: 400 HLNKNIS--IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 N N IE L+Q R+ K ++ AD R +L G +LED G TRW Sbjct: 406 GANSNDEEVAQIEALIQMRIDARNEKNWAQADVARDRLNEMGIVLED------GAGGTRW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|255282796|ref|ZP_05347351.1| cysteine--tRNA ligase [Bryantella formatexigens DSM 14469] gi|255266570|gb|EET59775.1| cysteine--tRNA ligase [Bryantella formatexigens DSM 14469] Length = 469 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 186/492 (37%), Positives = 257/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K EF + P + MYVCGPTVY+F HIGNARPMIVFD + R + + E Sbjct: 1 MKIYNTLSKKKEEFVPLVPGKVSMYVCGPTVYNFIHIGNARPMIVFDTVRRYMEHKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A++E I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAQEE------GVTADEISQRYIAECKKDMEGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +I +I G+AY A + + F T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIEMISTLIEKGYAYPAADGTVYFRTRKFKEYGKLSHKNLDDLRGGNRSLLVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW +GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEQKEDPLDFVLWKPKKEGEPYWESPWCQGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS C + + A W+HNGFLN++ RKMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECCNG-KIFARYWMHNGFLNIDNRKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------------- 337 + V+R ML HYR P++F+ + + A L++ Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAELMEAAGNGLNRIVNAVENLKFLAGNASQETLTEPE 344 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 +T + + A+ +D NT AI A+ +L + + N + Sbjct: 345 AETQKALAEYEKKFDDAMDDDFNTADAISAIFELVKFANTNVTEDSSKALAEAVKDKIVE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + ILG+ V K+ + + IE L++ER K K F+ AD IR L KG IL+D + Sbjct: 405 LSDILGLIVEKKE--EMLDAEIEALIEERQAARKAKNFARADEIRDILLGKGIILKDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|312794405|ref|YP_004027328.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181545|gb|ADQ41715.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 465 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 255/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF+ ++ + ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLSQTKEEFEPLEKNKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E + + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKE------GITVFELAKRFIEEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++++ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVSINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------QTSTS 343 +RL ML HYR+P++F++ + +AE+ L + + + Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDKLKAA 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + + + ILGI Sbjct: 345 IEDLKAKFIEAMEDDLNTAEATGYLFEMVREINTHANSCSKETLTFVKDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I I +LV++R K K F+ AD IR +L+S G+I+ D +R+ Sbjct: 405 LEQYGAKEEAIPQEILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLDTPQGTKIERI 464 >gi|88860441|ref|ZP_01135079.1| cysteinyl-tRNA synthetase [Pseudoalteromonas tunicata D2] gi|88817639|gb|EAR27456.1| cysteinyl-tRNA synthetase [Pseudoalteromonas tunicata D2] Length = 459 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 175/479 (36%), Positives = 259/479 (54%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ +F+ + I MYVCG T+YD+ H+G+AR + FDV+ R R+ + Sbjct: 2 VQIYNTLTRQKEQFKPMVAGKISMYVCGITIYDYCHVGHARTYVSFDVMNRYFRHLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII+RA + N+ I+ +T + T+ +D L L +P Sbjct: 61 -VTYVRNITDVDDKIIKRAHEN------NEEINDLTVRMTKAMHEDFNALNMLPADIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP++I +++ +I GHAY A N +++FD S+ YG+ S++ + + G RV Sbjct: 114 VTGHIPEIITMVERLIEKGHAYIAGNGDVLFDVSTFAAYGALSQQDLSMLQAGARVEVDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ P EP W SPWG GRPGWHIECSAMSS +LG FDIHGGG DL FP Sbjct: 174 GKDDPLDFVLWKKAKPEEPSWGSPWGAGRPGWHIECSAMSSKHLGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH G + + KMSKS NF T+ E+L + + Sbjct: 234 HHENEIAQSCCASGQK-YVNTWIHTGMVQVNKEKMSKSLNNFFTVREVL-------KQYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------SKGIIDPAVLSA 354 +R ++ HYR ++++ + L +A L + + A Sbjct: 286 RETVRFFLINGHYRSQLNYSQENLDQARSSLERIYTALRGVTPTPVDLAANEYVAKFRQA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT A+ + +LA+E K +L + A +LGI + + Sbjct: 346 MNDDFNTPEALPVVFELAKEINRVKDSDSSKAAELAFVLKAITEVLGIAQQEPESFLQGN 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +++ IE L+ +R K ++ AD R +L + ILED T W++ Sbjct: 406 QDEDEVAQIEALIAQRNQARADKNWALADDARDKLNAMNIILEDS------AGKTTWRK 458 >gi|312135922|ref|YP_004003260.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] gi|311775973|gb|ADQ05460.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] Length = 465 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 184/479 (38%), Positives = 251/479 (52%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEQGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDI+DK+I RA +E + + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDIEDKMINRANKE------GITVFELAERFIKEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIPDMITLIQKLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDLSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWH+ECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWLSPWGEGRPGWHVECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------------------TSTS 343 +RL ML HYR+P++F++ + +AE L + + S Sbjct: 285 EALRLFMLQAHYRKPLNFSLDLIEQAESALKRIYKCYENLEYLIRNETGSNSSNSTLKAS 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + A+ +DLNT A L ++ RE + + ILGI Sbjct: 345 LEQFKIKFIDAMEDDLNTAEATGYLFEMVREINTHANTCSKDVLILARDTLKELCGILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 E I + I +LV++R K K F+ AD IR +L+S G+I+ D +R Sbjct: 405 LEQYEQKEDEIPLEILELVEKRNQARKAKNFAEADRIRDELKSLGYIVLDTPQGTKIER 463 >gi|226309785|ref|YP_002769679.1| cysteinyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] gi|254765181|sp|C0ZIF7|SYC_BREBN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226092733|dbj|BAH41175.1| cysteinyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] Length = 468 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 174/492 (35%), Positives = 260/492 (52%), Gaps = 58/492 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++ NT+ R+ F ++P ++MYVCGPTVY++ HIGNARP IVFD L R L+Y Sbjct: 1 MGIQLTNTMTRRKEPFHTLEPGKVKMYVCGPTVYNYIHIGNARPAIVFDTLRRYLKYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VT+V+NITD+DDK+I A QE + + + T + D L P Q Sbjct: 61 E--VTFVQNITDVDDKLIRVANQE------GVTVKEVADRYTDAYNADLKSLNVSPPDIQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR IP++I +Q +I G AYE+ ++ F T YG S + +D+ + G RV Sbjct: 113 PRVMQTIPEIIEFVQGLIEKGFAYESEGDVYFRTGRFQEYGKLSHQPLDDLQAGARVEIN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + E W+SPWG GRPGWHIECSAM+ +LG+ DIH GG DL+F Sbjct: 173 EKKEHPLDFVLWKAAKTGEVTWDSPWGEGRPGWHIECSAMALKFLGEEIDIHAGGTDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C + A W+HNG LN++ KMSKS GNF+ +L E + Sbjct: 233 PHHENEIAQSECFTG-KVFARYWLHNGMLNIDNEKMSKSLGNFLLARDLSE-------KF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 +IR ML HYR PI+F+ + + +A L + T+ Sbjct: 285 GGQLIRFFMLQGHYRNPINFSEELIEQAANGLDRITTAYTNLSHRLDTARAEEPNDQAQE 344 Query: 345 -----GIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 G + ++ + +D+NT +AI + + +E+ + + + Sbjct: 345 QARIIGELRERFIAEMDDDINTANAITVIFDVVKEANLYLRHQNVGETEVRAYMDLLVEL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG+++ +E + + I+ L++ER K + F+ +D IR L +KG +LED Sbjct: 405 TEVLGLDIAEEQ--ELLDSEIDALIEERTEARKARNFARSDEIRDLLAAKGIVLEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + RW++K Sbjct: 460 ---PQGVRWRRK 468 >gi|330972601|gb|EGH72667.1| cysteinyl-tRNA synthetase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 460 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 260/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H G R M+ FD++ R LR+ E Sbjct: 2 LSIYNTLTKSKEVFKPLDGNKVRMYVCGMTVYDYCHPGYGRSMVAFDLVTRWLRFSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RAR+ ++ +T++ + +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRAREN------GESFDALTARMIEAMHEDEARLNILKPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFQGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKEDPLDFVLWKGVKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KTYANAWLHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR I+++ L E++ L ++ + +PA +A+ Sbjct: 286 PEVVRYLLVSSHYRSAINYSEDSLRESKAALERFYHALKGLPVAEPAGGEAFVERFSTAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L ++ RE + + L A +LG+ + + Sbjct: 346 NDDFGTPEACAVLFEMVREINRLRESDIAAAACLAARLKQLASVLGVLQLEADDFLRAGA 405 Query: 402 NKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+Q RL K ++ +D IR ++ + G +LED K T W+ Sbjct: 406 EGRVDAAEVEALIQARLAARAAKDWAESDRIRDRITAMGVLLEDGK------GGTTWR 457 >gi|30316338|sp|Q8U227|SYC_PYRFU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 477 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 183/495 (36%), Positives = 254/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF+ + ++MYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 2 LKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RAR+ + + + + F++D L PR Sbjct: 60 TVLMVMNFTDIDDKIIKRARE------TGEDPKELAERFIKIFLEDMEALKVKPADIYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+HI +I I + G+AYE ++ I F+ P YG S KI++ + G RV Sbjct: 114 VTDHIDDIIEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEPGEG 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIFPH Sbjct: 174 KKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E W+H GF+ ++G KMSKS GNF+TI ELL + + Sbjct: 234 HENEIAQSEACFGHE-WVKYWLHTGFVMVKGEKMSKSLGNFVTIRELL-------KRYEP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 VIR +L HYR P+++T + L A+ L + T + + Sbjct: 286 EVIRFFVLQKHYRSPLEYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWGELEFKT 345 Query: 348 -------DPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNAS 388 A+ +D NT A++A+ ++A K L F Sbjct: 346 YEIIREGKRKFYEAMDDDFNTAEALKAVFEVANAINKYLTEANKPKESILRKALEFFKIV 405 Query: 389 AHILGIE----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + G+ + + IE LV+ R L K K++ AD IR++L+ G LED Sbjct: 406 SEVFGVFEDYFREETKEREESEKLIELLVEVRKQLRKEKRYELADMIREELKKLGIQLED 465 Query: 445 YKNPDNGQRMTRWKQ 459 + T WK+ Sbjct: 466 RGS------ETTWKR 474 >gi|322833979|ref|YP_004214006.1| cysteinyl-tRNA synthetase [Rahnella sp. Y9602] gi|321169180|gb|ADW74879.1| cysteinyl-tRNA synthetase [Rahnella sp. Y9602] Length = 463 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 178/484 (36%), Positives = 253/484 (52%), Gaps = 50/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + +T + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRAAEN------GETFMALTDRMIAEMHADFASLNILPPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I ++Q +I HAY A N +++F S P+YG SR+ +D+ + G RV + Sbjct: 114 ATQHIHEIIDIVQKLIDRDHAYVASNGDVMFWVESDPDYGLLSRQDLDQLQAGARVEVEA 173 Query: 184 H-KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 + K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+F Sbjct: 174 NVKRNPMDFVLWKMSKPGEPSWTSPWGEGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 PHHENEIAQSSCAHDG-PYVNTWMHSGMVMIDREKMSKSLDNFFTVRDVL-------KYY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLS 353 A +R ++ HYR ++++ + L A + + T + Sbjct: 286 DAESVRYFLMSGHYRSQLNYSEENLKLARTSMERLYTALRGTDAAATPAGGEAFVTRFRA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK------- 398 A+ +D NT A L +AR+ + + L A +LG+ Sbjct: 346 AMDDDFNTPEAYSVLFDMARDINRLKTEDLSAANGLAAELRQLAGVLGLLEQDPEQFLKS 405 Query: 399 --EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + N + IE L+++R K + AD R +L G +LED G T Sbjct: 406 GAQADNDDEVAEIEALIKQRNDARASKDWGMADKARDRLNEMGIVLED------GAAGTT 459 Query: 457 WKQK 460 W++K Sbjct: 460 WRRK 463 >gi|325272290|ref|ZP_08138699.1| cysteinyl-tRNA synthetase [Pseudomonas sp. TJI-51] gi|324102572|gb|EGC00010.1| cysteinyl-tRNA synthetase [Pseudomonas sp. TJI-51] Length = 460 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 179/478 (37%), Positives = 252/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLTKAKETFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GESFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D T A L L RE + D L +LG+ Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDVDAAAGLAGRLRELGDVLGVLQLDADDFLRAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEGLIQARLQARADKNWAESDRIRDQLTAMGVVLEDSK------GATTWR 457 >gi|227824943|ref|ZP_03989775.1| cysteinyl-tRNA synthetase [Acidaminococcus sp. D21] gi|226905442|gb|EEH91360.1| cysteinyl-tRNA synthetase [Acidaminococcus sp. D21] Length = 483 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 179/503 (35%), Positives = 252/503 (50%), Gaps = 66/503 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNT+ RK EF + P + +YVCG T Y+ HIGNARP +V+DV++R L + Sbjct: 2 STIRVYNTMTRKKEEFVPLHPGKVGIYVCGVTPYNHPHIGNARPFVVWDVIHRFLEHEGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+V+N TD+DDKII A +E +I ++ + + + +L Sbjct: 62 D--VTHVQNFTDVDDKIIREANKE------GVTWDVIANRYIKAYFEVMDKLHVRRAHVY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++HIP +I+ +Q +I HG+ Y + ++ + +YG S R +D+ G RV Sbjct: 114 PRVSDHIPDIIHTVQQLIDHGYGYVVDGDVYYRVEKFEHYGELSGRTLDDMMAGARVDVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP W+SPWG+GRPGWHIECS MS+ YLG FD HGGG DLIF Sbjct: 174 ERKENPMDFALWKSAKPGEPSWDSPWGKGRPGWHIECSTMSTKYLGSSFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A W+HNGF+ + KMSKS GNF T+ ++L + + Sbjct: 234 PHHENEIAQSEGATCCHPFVRYWVHNGFITINEEKMSKSLGNFFTVLDIL-------KEY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-------------- 348 V+R +L THYR P+DF+ RL EA L + + + + Sbjct: 287 EPEVLRYFILQTHYRSPLDFSDARLKEASRSLERLRTAAQNLTELKGVISVGPDEDSLAL 346 Query: 349 --------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------PI 384 + L A+ +D NT AI L L +E H + Sbjct: 347 REKVSGFVESFLEAMRDDFNTSLAISYLFALGKEINILHQSVMTGGQKPDGKLVDMMDKA 406 Query: 385 FNASAHILGIEVCKEHLN-------KNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 + I+GI + AIE L+ ER K K F AD IR +L Sbjct: 407 WKEMTSIIGILEEDPGAKTEAVKDADEDAAAIESLIAERQEARKAKDFKKADAIRDELAQ 466 Query: 438 KGFILEDYKNPDNGQRMTRWKQK 460 KG +LED + RWK++ Sbjct: 467 KGILLEDT------PQGVRWKRQ 483 >gi|52078589|ref|YP_077380.1| cysteinyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52783950|ref|YP_089779.1| cysteinyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|61216165|sp|Q65PC8|SYC_BACLD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52001800|gb|AAU21742.1| cysteinyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52346452|gb|AAU39086.1| CysS [Bacillus licheniformis ATCC 14580] Length = 467 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 169/489 (34%), Positives = 259/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IVFD + + L Y Sbjct: 1 MTLTLYNTLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRKYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I+ A + + + + +I + + + +D L C Sbjct: 61 E--VQYVSNFTDVDDKLIKAANE------LGEEVPVIAERFIKAYFEDVGSLGCTKADCH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I IQ +I G+AYEA+ ++ + T S YG S + +DE + G R+ Sbjct: 113 PRVTENMDEIIDFIQTLIDKGYAYEADGDVYYKTRSFEGYGKLSHQSVDELRSGARIQVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKEDALDFTLWKAAKDNEISWDSPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KPFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KEH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+++V+ L + + ++ Sbjct: 285 DPQVLRFFMLSVHYRHPINYSVELLENTKNAFGRLKTAYSNLQHRLKSSTNLTEGDSEWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A +A+ +D NT +AI L LA+ + + +F+ Sbjct: 345 EKIEEQRKAFQTAMDDDFNTANAISVLFDLAKHANYYLQEKNTAEHVIQAFIQLFDEICS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++ L + IE+L+++R + + F+++D IR QL+S ILED Sbjct: 405 VLGFSLKEQEL---LDKDIEELIEKRNEARRNRDFATSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -PQGTRWKR 464 >gi|34497201|ref|NP_901416.1| cysteinyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] gi|34103057|gb|AAQ59420.1| cysteinyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] Length = 459 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 185/477 (38%), Positives = 267/477 (55%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ I+P + MYVCG TVYD HIG+AR + FDV+YR L+ + Sbjct: 4 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDI+DKII+RA + + + +D L L PTH+PR Sbjct: 63 -VNYVRNITDIEDKIIKRA------LERGITPEQLVEETIADMRQDAAALGLLPPTHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+H+ M+ +I+ +I +G AY A N ++ + YG S R +D+ + G RV Sbjct: 116 ATHHVGGMVAMIEQLIANGKAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEVDP 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS H+LG+ FDIHGGG DL FP Sbjct: 176 NKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+N++G KMSKS GNF TI ++L + + Sbjct: 236 HHENEIAQSEGAHG-HQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDVL-------QHFD 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTSTSKGIID-----PAVL 352 VIR ++ +HYR P+++T L +A+ L++ + TS GI Sbjct: 288 GEVIRFFIVRSHYRSPVNYTDSILNDAKHGLTRLYTALRGIELPTSDGIDWNHAYAARFK 347 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL--------N 402 +A+ +D T A+ L +LA E K+ D L + +LG+ + Sbjct: 348 AAMDDDFGTSEAVAVLFELAGEVNKSRDPQLARLLKDLGGVLGLLTRDPEVFLQGGVGEG 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + +E L+Q R K ++ +D IR +L +KG +LED G T W++ Sbjct: 408 ELSAEQVEALIQARKDARAAKDWAESDRIRDELTAKGIVLED------GAGGTIWRR 458 >gi|284048089|ref|YP_003398428.1| cysteinyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] gi|283952310|gb|ADB47113.1| cysteinyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] Length = 481 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 176/502 (35%), Positives = 250/502 (49%), Gaps = 65/502 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YN + R+ EF + P + +YVCG T Y+ HIGNARP +V+D + R L + Sbjct: 1 MSIRVYNDMTRQKEEFVPLHPGKVGIYVCGVTPYNHPHIGNARPFVVWDTIRRFLDHEGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII A +E +I ++ + + + +L Sbjct: 61 D--VTYVQNFTDVDDKIIRAANEE------GVTWDVIANRYIKAYFEVMDKLHVKRAHIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HIP +I+ +Q +I +G+ Y + ++ + +YG S RK+D+ G RV Sbjct: 113 PRVSEHIPDIIHTVQELINNGYGYVVDGDVYYRVERFSHYGELSGRKLDDMMAGARVDVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP W+SPWG+GRPGWHIECS MS+ YLG D HGGG DLIF Sbjct: 173 ERKENPMDFALWKSAKPGEPSWDSPWGKGRPGWHIECSTMSTKYLGNTLDFHGGGSDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+ + KMSKS GNF T+ +LL + + Sbjct: 233 PHHENEIAQSEGATGVHPFVRYWVHNGFITINEEKMSKSLGNFKTVYDLL-------KEY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 IR +L THYR P+DF+ +RL EA L + + Sbjct: 286 EPETIRYFILNTHYRSPLDFSQERLAEAGRSLERLRTAQNNLQEIQQVITVGPDAESLAL 345 Query: 345 ----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------PI 384 + A+ +D NT AI L LA+E H+ + Sbjct: 346 RDKVEELRKGFFDAMSDDFNTSLAISYLFALAKEINVYHNAIISGAKKPDGKLVEQIDKA 405 Query: 385 FNASAHILGIEVCKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + ++GI + N N I ++ER K + F+ AD IR +L +K Sbjct: 406 WKEMIGVIGILENQPAANGEGGAVSNEEAEIAARIEERQAARKARDFAKADAIRDELAAK 465 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 G ILED + RWK+K Sbjct: 466 GIILEDT------PQGVRWKRK 481 >gi|164686505|ref|ZP_02210533.1| hypothetical protein CLOBAR_00070 [Clostridium bartlettii DSM 16795] gi|164604516|gb|EDQ97981.1| hypothetical protein CLOBAR_00070 [Clostridium bartlettii DSM 16795] Length = 474 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 185/488 (37%), Positives = 262/488 (53%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I+ ++MYVCGPTVY+F HIGNARP I+FD L R L Y + Sbjct: 9 VKLYNTLSRKKEEFKPIEEGKVKMYVCGPTVYNFIHIGNARPFIIFDTLRRYLEYRGYD- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII+R+ +E N + +K +++ D L + P+ Sbjct: 68 -VTFVQNFTDVDDKIIKRSHEE------NITPEEVATKYIKEYFVDADGLGIKRASVHPQ 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I Q+I ++ + G+AY N ++ FDT +YG S K +E + G R+ Sbjct: 121 VTDNIEQIIAFVKELEDKGYAYAVNGDVYFDTKKFKDYGKLSGIKQEELEAGARIEVNDQ 180 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW SPWG GRPGWHIECS MS+ YLG+ DIH GG DL FPH Sbjct: 181 KRHPMDFVLWKAKKEGEPGWASPWGEGRPGWHIECSVMSNRYLGETIDIHAGGQDLKFPH 240 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + +N W+HN ++N+ KMSKS GNF T+ E+ E + Sbjct: 241 HENEIAQSEARSG-KNFSNYWLHNEYINVNNEKMSKSLGNFFTVREISEI-------YDL 292 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------------ 346 V+RL ML THYR PI+F+ + L +++ L + Sbjct: 293 EVVRLFMLSTHYRNPINFSDEILNQSKAGLERLYNAKEKAEFTINNLEDSKMTEEEAKLQ 352 Query: 347 -----IDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + A+ +D+NT A+ A+ +LA+ N L FN + Sbjct: 353 DELASFRQKFIDAMDDDVNTADAVSAIFELAKFMNSNITENSSKEFAQKALDEFNELTGV 412 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I V K+ + IEKL+++R K K F AD IR+QL KG +LED + Sbjct: 413 LNI-VNKDKKEDILDEEIEKLIEQRTEAKKNKNFQLADEIRQQLLDKGIVLEDTR----- 466 Query: 452 QRMTRWKQ 459 + +WK+ Sbjct: 467 -QGVKWKR 473 >gi|61216275|sp|Q7NX82|SYC_CHRVO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 457 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 185/477 (38%), Positives = 267/477 (55%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ I+P + MYVCG TVYD HIG+AR + FDV+YR L+ + Sbjct: 2 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDI+DKII+RA + + + +D L L PTH+PR Sbjct: 61 -VNYVRNITDIEDKIIKRA------LERGITPEQLVEETIADMRQDAAALGLLPPTHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+H+ M+ +I+ +I +G AY A N ++ + YG S R +D+ + G RV Sbjct: 114 ATHHVGGMVAMIEQLIANGKAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS H+LG+ FDIHGGG DL FP Sbjct: 174 NKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+N++G KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSEGAHG-HQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDVL-------QHFD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTSTSKGIID-----PAVL 352 VIR ++ +HYR P+++T L +A+ L++ + TS GI Sbjct: 286 GEVIRFFIVRSHYRSPVNYTDSILNDAKHGLTRLYTALRGIELPTSDGIDWNHAYAARFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL--------N 402 +A+ +D T A+ L +LA E K+ D L + +LG+ + Sbjct: 346 AAMDDDFGTSEAVAVLFELAGEVNKSRDPQLARLLKDLGGVLGLLTRDPEVFLQGGVGEG 405 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + +E L+Q R K ++ +D IR +L +KG +LED G T W++ Sbjct: 406 ELSAEQVEALIQARKDARAAKDWAESDRIRDELTAKGIVLED------GAGGTIWRR 456 >gi|312876620|ref|ZP_07736601.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311796573|gb|EFR12921.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 465 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 256/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF+ ++ + ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLSQTKEEFEPLEKNKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E + + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKE------GITVFELARRFIEEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFVLWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------QTSTS 343 +RL ML HYR+P++F++ + +AE+ L + + + Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSESDDKLKAA 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + + ILGI Sbjct: 345 IEDLKAKFIEAMEDDLNTAEATGYLFEMVREINTHANSCSKEALTFAKDTLKELCGILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I I +LV++R K+K F+ AD IR +L+S G+I+ D +R+ Sbjct: 405 LEQYGAKEEAIPQEILELVEKRNQARKVKNFAEADRIRDELKSLGYIVLDTPQGTKIERI 464 >gi|307131980|ref|YP_003883996.1| cysteinyl-tRNA synthetase [Dickeya dadantii 3937] gi|306529509|gb|ADM99439.1| cysteinyl-tRNA synthetase [Dickeya dadantii 3937] Length = 461 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + I+ +T + + D L P +PR Sbjct: 61 -VKYVRNITDIDDKIIKRA------TENGETITQLTDRMIGEMHTDFDALNIQRPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I ++I L++ +I HAY AN +++F + P YG+ SR+ +++ K G RV Sbjct: 114 ATHYIAEIIELVEQLIARRHAYVANNGDVMFSVDTAPGYGALSRQDLEQLKAGARVEITE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGE-YVNYWMHTGMVMVDREKMSKSLNNFFTMRDVL-------MHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVLSA 354 A IR ++ HYR +++T + L +A L + + A Sbjct: 286 AETIRYFLISGHYRSQLNYTEENLKQARASLERLYTALRGTDAAASAAGGDAFESRFRDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDAAAANGLAAALRRLAGVLGLLEQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R + K ++ AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVQEIEALIKQRNDARQSKDWALADAARNRLTEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|26989624|ref|NP_745049.1| cysteinyl-tRNA synthetase [Pseudomonas putida KT2440] gi|37999406|sp|Q88IU4|SYC_PSEPK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24984507|gb|AAN68513.1|AE016483_4 cysteinyl-tRNA synthetase [Pseudomonas putida KT2440] Length = 460 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 252/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR++I++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKRIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D T A L L RE + D L +LG+ + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDVEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEGLIQARLKARADKNWAESDRIRDQLTAMGVVLEDSK------GTTTWR 457 >gi|292491058|ref|YP_003526497.1| cysteinyl-tRNA synthetase [Nitrosococcus halophilus Nc4] gi|291579653|gb|ADE14110.1| cysteinyl-tRNA synthetase [Nitrosococcus halophilus Nc4] Length = 484 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 183/504 (36%), Positives = 266/504 (52%), Gaps = 71/504 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ EF I+P +RMYVCG TVYD H+G+AR M+VFDV+ R LR E Sbjct: 2 LRIYNSLTRRKEEFVPIEPGKVRMYVCGMTVYDLCHVGHARVMVVFDVVARYLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + I +T++ + +D L L P +PR Sbjct: 61 -VTYVRNITDIDDKIIRRAHER------GENIQELTARYIEALHEDAEGLQILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + +I ++Q ++ G+AY+ N +I +D S YG+ S +++DE + G RV Sbjct: 114 ATESMEAIIAMVQRLLEQGYAYQGENGDIYYDVSHFEGYGALSGKQLDELRAGERVQVSE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKPNEPAWDSPWGPGRPGWHIECSAMSTQALGPHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+ ++ KMSKS GNF T+ E+LE + Sbjct: 234 HHENEIAQSEAATGCK-FVNYWMHNGFVRVDDEKMSKSLGNFFTVREVLE-------HYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTS 343 V+R +L +HYR P+++T Q+L A+ +++ + + Sbjct: 286 PEVLRYFILSSHYRSPLNYTEQQLETAQAAVTRLYTALRGMPGEGISISAQGSAQELAEG 345 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 A+ +D NT A+ L+++ + + L + + ILG+ Sbjct: 346 DDPFVQRFCEAMDDDFNTPEALALLNEIRHALNRAREEGDKDKVQYLARLLPSLGAILGL 405 Query: 395 EVCK-------------------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + E IE+L+ +R K K +++AD++R L Sbjct: 406 LTQEPEQFLRDPRQAAAPSIVSAEGEAALSDGDIEQLIAQRTAARKNKDWAAADHLRDVL 465 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 + +G LED T W++ Sbjct: 466 KKQGITLEDTPT------GTLWRR 483 >gi|218778624|ref|YP_002429942.1| cysteinyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] gi|218760008|gb|ACL02474.1| Cysteinyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] Length = 474 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 185/493 (37%), Positives = 260/493 (52%), Gaps = 60/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ + P ++ MYVCGPTVYD +HIG+AR +VFD+++R L+ E Sbjct: 3 LTLYNTLTRQKETFKPLKPGHVSMYVCGPTVYDSSHIGHARSAVVFDIVFRYLQESGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA + + ++ +F +D LA L PT +PR Sbjct: 62 -VTYVRNFTDVDDKIINRANER------DMDCQALSEIYIDEFHRDMDALAVLRPTLEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I + ++ GHAY + ++ FD S +YG S RK+++ + G RV Sbjct: 115 ATEFIKEIIEVTSKLVEKGHAYVVDGDVYFDVRSFESYGKLSGRKLEDMEAGARVKVDSR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP WESPWG GRPGWHIECSAMS LG+ FDIHGGG DLIFPH Sbjct: 175 KKDPFDFALWKAKKPGEPAWESPWGEGRPGWHIECSAMSWSRLGETFDIHGGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS A ++ W+HNGF+N++ KMSKS NF+T+ E+L+ + Sbjct: 235 HENEVAQSEAAFG-QQFVRYWMHNGFVNIDSEKMSKSLNNFLTVKEILD-------QFHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDP---------AV 351 +RL +L HYR P+DFT Q + EA L + + S G +D Sbjct: 287 EAVRLFLLSKHYRSPVDFTEQAMKEAASGLDRVYSCLQRILESVGGLDDDFQISGHWSRF 346 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-------------LLPIFNASAHILG----- 393 + + +D NT A+ L + R+ + D +LG Sbjct: 347 CACMDDDFNTAGALGILFEAVRDVNRLLDGDLTGDDQVRATEAGAAIVKMGGVLGMFQED 406 Query: 394 ----IEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 E KE ++ ++ L+ +R K K +++AD IR QL G +ED Sbjct: 407 PVAYFEGKKEQAAQDGGFDPAMVDDLIAKRSQARKDKDWNTADAIRDQLTEMGVAIEDTP 466 Query: 447 NPDNGQRMTRWKQ 459 + T WK Sbjct: 467 D------GTIWKM 473 >gi|328951998|ref|YP_004369332.1| cysteinyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] gi|328452322|gb|AEB08151.1| cysteinyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] Length = 490 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 185/511 (36%), Positives = 248/511 (48%), Gaps = 77/511 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F + P +++Y CG TVYD HIG+AR +VFDV+ R LR+ Sbjct: 1 MQVYNTLSRRKEAFIPLKPGIVQIYACGVTVYDDCHIGHARSAVVFDVIVRYLRFLG--N 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V++VRN TDIDDKII+RA +EH + + F +D L +P+ Sbjct: 59 KVSWVRNFTDIDDKIIQRAEREHT------SWKTVAETYIASFQRDMAALGVAPADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI ++I IQ + G AY+ N ++ F + P YG S R +D+ G RV Sbjct: 113 ATDHIDEIIGFIQVLEDQGLAYQRNGDVYFPVAKFPGYGKLSGRSLDDMLAGARVDVNIQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K NP DF LWK S P EP W+SPWG GRPGWHIECSAMS HYLG+ FDIHGGG DLIFPH Sbjct: 173 KDNPFDFALWKASKPGEPAWDSPWGPGRPGWHIECSAMSRHYLGETFDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG + + KMSKS GNF TI E+L + Sbjct: 233 HENEIAQSEAAHG-KPLARYWLHNGMVTVNQEKMSKSLGNFFTIREVLA-------KFHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 V+R ++ HYR P+DF+ Q L EAE L + T Sbjct: 285 EVVRFFLIQNHYRSPLDFSDQALAEAENALERLYSTLARLDQTTGPIAAPEAISGAFSLS 344 Query: 346 -----------IIDPAVLSALYNDLNTVSAIQALHKLAR----------ESTKNHDLLPI 384 I L A+ +D NT A+ L R + L Sbjct: 345 GLDSEEQSRLLTIRSRFLEAMDDDFNTAQALGVLFDAVRLLNRIVEHNPSGNADMSALAW 404 Query: 385 FNASAHILG-------------IEVCKEHLNKNI--SIAIEKLVQERLILLKMKKFSSAD 429 +LG ++ ++ + IE+L+ R K + F+ AD Sbjct: 405 TRRELTVLGGILNLLQQDPQTMLQNLRQKTDALTIPPSEIERLIAARAEARKQRDFTKAD 464 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR+QL G +LED + W+ K Sbjct: 465 AIRQQLAEAGVLLEDT------PQGAVWRVK 489 >gi|167769106|ref|ZP_02441159.1| hypothetical protein ANACOL_00429 [Anaerotruncus colihominis DSM 17241] gi|167668746|gb|EDS12876.1| hypothetical protein ANACOL_00429 [Anaerotruncus colihominis DSM 17241] Length = 462 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 175/486 (36%), Positives = 254/486 (52%), Gaps = 54/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I+P +RMY CGPTVY++ HIGNARP+ VFD L R L Y + Sbjct: 1 MKIFNTLTRQKEEFVPIEPGKVRMYACGPTVYNYIHIGNARPICVFDTLRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I +A +E + + + +++ DT L PR Sbjct: 60 -VTFVQNFTDIDDKLINKANEE------GITVREVAERYIGEYMTDTKGLGIRPADIHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I +++ + G AYE + + F + YG S + ++E + G R+ Sbjct: 113 ATENIDTIINMVKTLEEKGFAYERDGSVYFRSRRFEEYGKLSHQPLEELEAGARIDVSDK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM +LG DIH GG DLIFPH Sbjct: 173 KEDPLDFVLWKAAKPGEPSWPSPWGEGRPGWHIECSAMIRRHLGDTIDIHCGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C E + W+HNG++N++ RKMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSECCTGAE-YVHYWMHNGYINVDNRKMSKSLGNFFTVREVAEKFGY------- 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--------------------WPQTSTSK 344 I+ ML HYR PI+++++ + + L + W Sbjct: 285 EPIKFMMLQAHYRSPINYSLEVIEQCRAALERLHNCRDSLDFALESALGQGDWHAFREKM 344 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHILGI 394 + A+ +DLNT I AL ++AR+ + F+ +LG+ Sbjct: 345 DARAAQFVEAMDDDLNTADGIAALFEMARDINTYIAQPQPEEAVAYAVKRFDELCGVLGL 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + +K++ +E L+ ER K K F+ AD IR QL G +L+D + Sbjct: 405 LYNR--ASKDLDSEVEALIAERQAARKAKDFARADAIRDQLAGMGILLKDT------PQG 456 Query: 455 TRWKQK 460 +W +K Sbjct: 457 VQWSRK 462 >gi|302872638|ref|YP_003841274.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302575497|gb|ADL43288.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 465 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 183/480 (38%), Positives = 256/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL + EF+ ++ + ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLSQTKEEFEPLEKNKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDI+DK+I RA +E + + + +++ KD RL T PR Sbjct: 60 -VIYIQNFTDIEDKMINRANKE------GITVFELAERFIKEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT IP MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIPDMIVLIQKLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELVAGARVDLSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWFSPWGEGRPGWHIECSVMAMKYLGETIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A WIHNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWIHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------QTSTS 343 +RL ML HYR+P++F++ + +AE+ L + + T Sbjct: 285 EALRLFMLQAHYRKPLNFSLDLIEQAEVALKRIYTCYENLEFLIQNETSSSENNDKLKTV 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + + + ILGI Sbjct: 345 IEQLKAKFIEAMEDDLNTAEATGYLFEMVREINTHANFCSKETLTFAKDVLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + + I +V++R K+K F+ AD IR +L+S G+I+ D +R+ Sbjct: 405 LEQYSSKEEYVPQEILDMVEKRNQARKLKNFAEADRIRDELKSLGYIVLDTPQGTKIERI 464 >gi|242240078|ref|YP_002988259.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech703] gi|242132135|gb|ACS86437.1| cysteinyl-tRNA synthetase [Dickeya dadantii Ech703] Length = 461 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FD++ R LRY + Sbjct: 2 LKIFNTLSRQKEEFKPIHAGKVGMYVCGITVYDLCHIGHGRTFVAFDMVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I+ +T + + D L L+P +PR Sbjct: 61 -VKYVRNITDIDDKIIKRAAEN------GETIAQLTDRMIAEMHADFASLNILSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I HAY A N +++F + P YG SR+ +++ K G RV Sbjct: 114 ATHHIAEIIELVEKLIARRHAYVAENGDVMFSVDTAPGYGVLSRQDLEQLKAGARVEIAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKLNEPSWPSPWGNGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H G + ++ KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTCAHGGE-YVNYWMHTGMVMVDREKMSKSLNNFFTVRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + +A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDESASPAGGEAFEARFCTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEHLN---- 402 + +D NT A L +AR+ + L A +LG+ L Sbjct: 346 MDDDFNTPEAYSVLFDIARDINRLKAEDAAAANALAAELRRLAGVLGLLEQDPELFLQSG 405 Query: 403 ----KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + I+ L+++R + K +++AD R +L G +LED G + T W+ Sbjct: 406 AQPCDDEVQEIDALIKQRNDARQSKDWAAADAARNRLTDMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|288574958|ref|ZP_06393315.1| cysteinyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570699|gb|EFC92256.1| cysteinyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 469 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 182/490 (37%), Positives = 254/490 (51%), Gaps = 54/490 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YN L RK F + + Y CGPTVYD+ HIGNARP IVFDVL R + + Sbjct: 1 MSLVLYNDLTRKKEPFVPLKDGEVGFYSCGPTVYDYFHIGNARPFIVFDVLRRYMEFSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+V+N TD+DDK+I RA + + + + K + +D L TH Sbjct: 61 --RVTFVQNFTDVDDKMINRANE------MGITVQELAEKTIADYFEDADALGIKRATHY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI ++I L++ + GHAYE + + FD SS P YG SR+ I+E + G+R+ Sbjct: 113 PRATEHIEEIIDLVKRLEESGHAYEVDGVVYFDVSSFPEYGKLSRQNIEELQSGSRIEVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK P EP W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 SSKRNPLDFVLWKAQKPGEPAWDSPWGKGRPGWHIECSAMAMKYLGNTLDIHSGGTDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ A E W+HN ++ ++ KMSKS GNF+T E + + Sbjct: 233 PHHENEIAQAEAAT-EEVFVRYWLHNEYILIDKEKMSKSLGNFMTAREAR-------KHY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------PQTSTSKGIID 348 IR+ ML HYR P++F + L +A L + P + I++ Sbjct: 285 SPLAIRMFMLSAHYRSPVNFGPEGLQQATAALERLHNCWSDFRYAADNRPHSQGQDDIVE 344 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLAREST---KNHDLL---------PIFNASAH 390 ++A+ +D NT AI + + K +D L F Sbjct: 345 SIKRHRDDFVAAMDDDFNTAGAIGHIFEAVSTVNGHLKGNDSLSSEGIKAIEDFFRDVDS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 I+G+ + S IE L+++R K F+++D IR QL +KG ILED Sbjct: 405 IMGLIGLDSDGQDDDSEEIESLIRKREEARSAKDFATSDAIRDQLAAKGVILEDT----- 459 Query: 451 GQRMTRWKQK 460 + T+WK+K Sbjct: 460 -PQGTKWKKK 468 >gi|323138201|ref|ZP_08073273.1| cysteinyl-tRNA synthetase [Methylocystis sp. ATCC 49242] gi|322396453|gb|EFX98982.1| cysteinyl-tRNA synthetase [Methylocystis sp. ATCC 49242] Length = 455 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 233/467 (49%), Positives = 304/467 (65%), Gaps = 20/467 (4%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + ++IYNTL R+ EF+ +D SN+RMYVCGPTVYD+AHIGNARP+IVFDVLYRLLR++ Sbjct: 1 MSQTLRIYNTLAREKQEFRPLDASNVRMYVCGPTVYDYAHIGNARPLIVFDVLYRLLRHH 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTYVRNITD+DDKI RA + +I +T + + F +D L CL PT Sbjct: 61 YGADHVTYVRNITDVDDKINARAAER------GISIRELTEETNRVFQEDVRALGCLEPT 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 QPRAT HI +MI +I+ +I HAY A+ ++FD S+ +YG SRR +DE G RV Sbjct: 115 VQPRATEHIAEMISIIERLIASRHAYAADGHVLFDVPSMKDYGRLSRRSLDEMLAGARVD 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K+ DF+LWK S EPGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGG+DL Sbjct: 175 VAPYKRGDMDFVLWKPSKENEPGWDSPWGRGRPGWHIECSAMSWKHLGETFDIHGGGIDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA + AN W+HNGFL +EG KMSKS GNF+TI+ELL T+KFGGR Sbjct: 235 VFPHHENEIAQSRCAFDHDVMANYWMHNGFLQVEGEKMSKSLGNFVTIHELLHTEKFGGR 294 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------TSTSKGIIDPAVLSA 354 WP V+RLAML THYR+PID+TV+ L EAE L +W + T+ + A Sbjct: 295 KWPGEVLRLAMLRTHYRQPIDWTVKALEEAETSLRRWAEFIEAGETTGDSSDFFGQFVGA 354 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEVCKEHLNKNISIAIEKLV 413 L +DLNT A+ LH + + L+ + +A +++ IE +E + AI L+ Sbjct: 355 LKDDLNTPLAMSFLHSVFDPRLLDDALMLVGIDARSYVQWIE--RETRRGVDAAAIGALI 412 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 RL K ++ +D IR +L + G L+D K+ T W+ K Sbjct: 413 NARLAARAAKNWAESDRIRDELAAMGIALKDNKDGT-----TTWEVK 454 >gi|307544947|ref|YP_003897426.1| cysteinyl-tRNA synthetase [Halomonas elongata DSM 2581] gi|307216971|emb|CBV42241.1| cysteinyl-tRNA synthetase [Halomonas elongata DSM 2581] Length = 467 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 180/476 (37%), Positives = 254/476 (53%), Gaps = 45/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ F IDP +RMYVCG TVYD+ H+G+AR M+ FDV+ R LR + Sbjct: 1 MQIYNTLTRRKETFTPIDPGRVRMYVCGMTVYDYCHLGHARVMVAFDVITRYLRARGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKI++RA + + I+ +T + +D RL L P +PR Sbjct: 60 -VTYVRNITDIDDKILKRAEEN------GETIASLTDRMIDAMHEDEGRLGVLRPDAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ +++ +IQ +I G+AY A N ++ + +YG + R D+ + G RV + Sbjct: 113 ATQHVDEIVTMIQTLIDKGYAYAASNGDVYYRVRKFADYGKLNNRDPDDMRAGARVDVEE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P E W SPWG GRPGWHIECSAMS+ LG+ FDIHGGG DL FP Sbjct: 173 LKEDPLDFVLWKAAKPGEADWLSPWGPGRPGWHIECSAMSTCCLGETFDIHGGGPDLTFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ N W+H G + ++ KMSKS GNF TI E+LE Sbjct: 233 HHENEIAQSEAATG-KQYVNTWMHAGAVRVQHEKMSKSLGNFFTIREVLE-------HHD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------IDPAV 351 V+R ++ +HYR PI++ L +A L ++ + D Sbjct: 285 PEVVRYLLVASHYRSPINYAPDSLADARKSLERFYNALDGVALEGVETPGEVDPSFDRRF 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIE------VC 397 + A+ +D NT AI L LARE + L +LG+ Sbjct: 345 IEAMDDDFNTAGAISVLFDLARELNRARKEAPEQAPALAAELKRLGGVLGLLQQEPAVFL 404 Query: 398 KEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 K + IE + ER + + F+ AD IR +L + G +L+D + + Sbjct: 405 KGGAGELPLSEAEIEARISERAEAKQARDFARADAIRDELAALGIVLKDSREGTSW 460 >gi|297545336|ref|YP_003677638.1| cysteinyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843111|gb|ADH61627.1| cysteinyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 466 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 187/488 (38%), Positives = 255/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EFQ ++ + MYVCGPTVY++ HIGNAR IVFD + R L Y + Sbjct: 1 MKLYNTLSRTKEEFQPLNDKVVNMYVCGPTVYNYIHIGNARAFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA++E N + K ++ KD L T P+ Sbjct: 60 -VNYVQNFTDIDDKIIKRAQEE------NVTTKELAEKYIHEYFKDADNLGIKRATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++ I+ +I G+AY N + F+T+ +YG S + I+E + G R+ Sbjct: 113 ATEHIEDIVKFIKILIDKGYAYVVNGNVYFETAKFKDYGKLSHKNIEELQAGARIEINEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK P EP W+SPWGRGRPGWHIECS MS+ YLGK DIH GG DLIFPH Sbjct: 173 KKNPLDFVLWKAQKPGEPAWDSPWGRGRPGWHIECSVMSTKYLGKTLDIHAGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ + W+H G+LN+ KMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSEALYG-QQFSKYWMHIGYLNINNEKMSKSKGNFFTVREITE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLS----------- 353 V+RL MLM HYR PI+F++ + +A + + + Sbjct: 285 EVLRLFMLMAHYRNPINFSLDLMDQANSAYERLLNAMANLKHLLTVCKERELNEEEKRIV 344 Query: 354 ------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 A+ +D NT AI L ++A+ + N +L +F + I Sbjct: 345 EKFEEYKKEFEEAMDDDFNTADAISVLFEMAKTANINLSGNSSKELVKYILDMFLKLSEI 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + I L+++R K K + AD IR +L KG ILED Sbjct: 405 LGL-FYRTVKTDIDDEEILALIEKRQQARKEKNWKLADEIRDRLREKGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PEGVRWKR 465 >gi|14521604|ref|NP_127080.1| cysteinyl-tRNA synthetase [Pyrococcus abyssi GE5] gi|13878786|sp|Q9UYV2|SYC_PYRAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|5458823|emb|CAB50310.1| cysS cysteinyl-tRNA synthetase [Pyrococcus abyssi GE5] Length = 477 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 187/495 (37%), Positives = 253/495 (51%), Gaps = 60/495 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IK+YNTL RK E + + +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 1 MGIKVYNTLTRKKEELKPLRDGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHRGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII+RA++ + + + + F++D L Sbjct: 61 --TVLMVMNFTDIDDKIIKRAQE------TGEDPGKLAERFIKVFLEDMNALKVKPADIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HI +I I+ + G+AYE ++ + F+ +YG S KI+E + G RV Sbjct: 113 PRVTEHIDDIIEFIKKLKEKGYAYEGSDGVYFEVQKFKDYGKLSGVKIEELRKGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIF Sbjct: 173 EGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS E W+H GF+ ++G KMSKS GNF+T+ ELL + + Sbjct: 233 PHHENEIAQSEACFGHE-WVRYWLHTGFVMVKGEKMSKSLGNFVTVRELL-------QRY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------------------------ 338 VIRL +L HYR P+D+T + L A+ L + Sbjct: 285 SPEVIRLFVLQKHYRSPLDYTEEGLQHAKNNLERLYNTLENIRIAMRNAELSYKWSEKDF 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFN 386 + + A+ +D NT A++A+ +++ K L F Sbjct: 345 EAYEAIREARKKFYDAMDDDFNTAEALKAVFEVSNAINKYILEVDKPKESILRKALEFFK 404 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + GI + KE IE LV+ R L K K+F AD IR++L G LED Sbjct: 405 VVSEVFGIFEDYFKEEKKGEEEKLIELLVEVRKQLRKEKRFDLADKIREELRKLGIQLED 464 Query: 445 YKNPDNGQRMTRWKQ 459 + T WK+ Sbjct: 465 K------GQETVWKR 473 >gi|307243392|ref|ZP_07525549.1| cysteine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] gi|306493202|gb|EFM65198.1| cysteine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] Length = 467 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 178/488 (36%), Positives = 259/488 (53%), Gaps = 55/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ RK EF ++ ++MYVCGPTVY+F H+GNARP VFD L R Y E Sbjct: 1 MKIYNTMTRKKEEFIPLEEGKVKMYVCGPTVYNFIHLGNARPFTVFDTLRRYFEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY++N TD+DDKII+R+ +E + + K +++ D L T P+ Sbjct: 60 -VTYIQNFTDVDDKIIKRSHEE------GISPEEVAEKYIKEYFIDCDGLGIKRATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I +I +Q++I G+AYEA +++F T YG S + I+E ++G R+ Sbjct: 113 VTDNIDNIIVFVQDLIDKGYAYEAGGDVLFRTRKFKEYGKLSHQNIEELELGARIDVDDK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EPGW+SPWG GRPGWHIECS MS+ YLG DIH GG DL FPH Sbjct: 173 KEDPLDFVLWKAKKEGEPGWQSPWGEGRPGWHIECSVMSNRYLGNTIDIHAGGQDLQFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + A W+HNG++N++G KMSKS GNF T+ ++ + Sbjct: 233 HENEIAQSECRNG-HTFARYWMHNGYINVDGEKMSKSLGNFFTVRDI-------SNKYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 ++R +L T YR P++F+ L +A+ L + + I Sbjct: 285 GLVRFFLLATQYRNPVNFSDTVLEQAKAGLERLTNARDNAEFILGNLADSSLRDEEKDMV 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + A+ +DLNT AI + +LA+ N L IFN + Sbjct: 345 AGLDKYRERFIEAMDDDLNTADAISVIFELAKFMNTNISDQSSKEFVQLNLDIFNELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I + ++S +E L+ +R K K F+ AD IR +L + G +ED + Sbjct: 405 LNIANKSVEEDDSLSQKVEDLIAKRAQAKKEKNFALADQIRDELTAMGIAIEDTR----- 459 Query: 452 QRMTRWKQ 459 + +WK+ Sbjct: 460 -QGVKWKR 466 >gi|218767348|ref|YP_002341860.1| cysteinyl-tRNA synthetase [Neisseria meningitidis Z2491] gi|34222758|sp|Q9JWJ3|SYC_NEIMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|121051356|emb|CAM07647.1| cysteinyl-tRNA synthetase [Neisseria meningitidis Z2491] Length = 699 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 230 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 287 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 288 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 341 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 342 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 401 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 402 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHH 461 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 462 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 521 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 522 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 574 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 575 LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 634 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 635 DPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 690 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 691 --AGGTTWRR 698 >gi|147676630|ref|YP_001210845.1| cysteinyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] gi|187629838|sp|A5D5M0|SYC_PELTS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146272727|dbj|BAF58476.1| cysteinyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] Length = 484 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 177/505 (35%), Positives = 253/505 (50%), Gaps = 71/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ FQ +P + MYVCGPT Y++ H+GNARP++ FD + R L + E Sbjct: 1 MEIYNTLTRRKENFQPREPGRVCMYVCGPTTYNYIHLGNARPLVFFDTVRRYLIHKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII RA++E D + + ++ KD L P Sbjct: 60 -VLFVQNFTDVDDKIINRAQEE------GDDPLALARRYIGEYFKDADALNVRRADRHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HIP +I ++ ++ G AY + + F+ YG S R +++ + G RV Sbjct: 113 VSEHIPDIIKMVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W+SPWG GRPGWHIECSAMS YLG FDIHGGG DLIFPH Sbjct: 173 KRDPLDFALWKAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+ + KMSKS GNF + ++L +P Sbjct: 233 HENEIAQSEAATG-QPFVRYWMHNGFITVNEEKMSKSLGNFFLVRDILA-------KFPP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 ++R +L THYR P+DF +++ A L + + Sbjct: 285 ELVRFFLLSTHYRSPLDFDGEKMAAAGRGLERIKTSLRLLYEALERPVSEGVQAVCSRDP 344 Query: 345 -GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------------HDLLPIFNA 387 I + +A+ +D NT AI A+ LARE+ L +FN Sbjct: 345 FDEIRASFEAAMDDDFNTALAIGAVFDLAREANTAVQRTGPAVSGQDRQILQYALDLFNE 404 Query: 388 SAHILGI--------EVCKEHLNKNISIAIEKLV----QERLILLKMKKFSSADYIRKQL 435 +LGI + + + S +E L+ + R K K +S+AD IR L Sbjct: 405 FNEVLGIFKVDGASGRLLIDGAAGDDSGLVEGLINLILEVRQEARKRKDWSTADRIRDGL 464 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 + G +LED + RWK++ Sbjct: 465 KELGILLEDT------PQGVRWKKQ 483 >gi|167629446|ref|YP_001679945.1| cysteinyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] gi|229558718|sp|B0TC35|SYC_HELMI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167592186|gb|ABZ83934.1| cysteinyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] Length = 481 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 181/501 (36%), Positives = 256/501 (51%), Gaps = 65/501 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL R+ F + MYVCGPT YD+ H+GNARP++VFD + R L + Sbjct: 1 MSLRVYNTLSREKETFVPHKAGRVGMYVCGPTTYDYIHLGNARPLVVFDTIRRYLEHVGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKII RA++ I + + ++ +++ +D L T Sbjct: 61 E--VVYIQNFTDIDDKIIHRAKE------IGEDPIAMAARFVEEYYRDAKALNVRPATIH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+ + H+ ++I +I ++ GHAYE ++ F S +YG S R +++ + G RV Sbjct: 113 PKVSAHMAEIIAMIGVLVEKGHAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 173 ERKRHPMDFALWKGAKPGEPSWDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A W+HNGF+ + KMSKS GNF T+ E+L + + Sbjct: 233 PHHENEIAQSEACTGTSPMARYWLHNGFITVNQEKMSKSLGNFFTLREIL-------KRF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPA-- 350 P VIR +L THYR PIDF +L A+ L + S +G PA Sbjct: 286 PGDVIRFYLLSTHYRSPIDFDDSKLEAAQKGLQRLRTSRRLIEEALAASGKEGAERPAGQ 345 Query: 351 --------------VLSALYNDLNTVSAIQALHKLARESTK---------------NHDL 381 A+ +D NT A+ L LARE+ + Sbjct: 346 REKLEEQWLAAKKGFREAMDDDFNTALALSMLFDLAREANTFLHGGFALTPEDRQLLLQV 405 Query: 382 LPIFNASAHILGIEVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 F A +LGI++ + + + L+ R K K +++AD IR L+ Sbjct: 406 AETFEELAGVLGIDLAGGAAAADDNTVDGLMNLLIGIRAEARKKKDWATADRIRDGLKEL 465 Query: 439 GFILEDYKNPDNGQRMTRWKQ 459 G ++ED + RWK+ Sbjct: 466 GIVIEDT------PQGARWKK 480 >gi|119471530|ref|ZP_01613944.1| cysteinyl-tRNA synthetase [Alteromonadales bacterium TW-7] gi|119445473|gb|EAW26759.1| cysteinyl-tRNA synthetase [Alteromonadales bacterium TW-7] Length = 459 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 173/479 (36%), Positives = 259/479 (54%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ +F+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ Sbjct: 2 VQIYNTLTRQKEQFKPMVDGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + ++I+ +T + T+ +D L L P +P Sbjct: 61 -LKYVRNITDVDDKIIKRANENK------ESINDLTLRMTKAMHEDFDSLNMLRPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +++ +I GHAY A + +++FD S+ YG+ S++ + + G+RV Sbjct: 114 VTGHMDEIIEMVERLIAKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECSAMSS +LG+ FDIHGGG DL FP Sbjct: 174 DKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ E N WIH G + + KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSCCANNGE-YVNTWIHTGMVQVNKEKMSKSLDNFFTVRDVL-------KEYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 +R ++ HYR ++++ + L +A L + I+ A Sbjct: 286 PESVRYFLISGHYRSQLNYSQENLDQARSSLERIYTALRDVKPIECELESNEFVIKFRKA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEH 400 + +D NT A+ L +LA+E + + L I +LG+ + Sbjct: 346 MDDDFNTPEALPVLFELAKELNRVKESDAIQAGQLAFILRTIGEVLGVAQQAPEAFLQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + N IE L+ +R K +++AD R L + G ILED T W++ Sbjct: 406 QDDNEVATIEALIVKRNDARASKNWAAADEARDALNALGVILEDS------AGKTTWRK 458 >gi|222053657|ref|YP_002536019.1| cysteinyl-tRNA synthetase [Geobacter sp. FRC-32] gi|254781681|sp|B9LZV4|SYC_GEOSF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|221562946|gb|ACM18918.1| cysteinyl-tRNA synthetase [Geobacter sp. FRC-32] Length = 494 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 198/516 (38%), Positives = 262/516 (50%), Gaps = 80/516 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL EF ++P ++MYVCG TVYD HIG+AR +VFDV+YR + Sbjct: 1 MGLRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCHLGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN TDIDDKII RA +E +I+ + ++F +D RL PT Q Sbjct: 61 D--VTYVRNYTDIDDKIINRANRE------GVTYDLISERFIKEFDRDMERLGLKLPTCQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI ++I L+Q +I AY+A ++ F +Y S R +++ + G R+ Sbjct: 113 PKATEHIDEIISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 173 ERKRHPMDFALWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + N W+HNGF+N+ KMSKS GNF TI E+L+ + Sbjct: 233 PHHENEIAQSEAATG-KPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDR-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 V+R +L HYR PIDF+ Q LTEAE L + + + Sbjct: 285 DNEVLRFFLLSAHYRSPIDFSDQNLTEAEAGLERIYKALAAVEETLAAGNGCTGAPVDAS 344 Query: 347 ---------------IDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHD---- 380 I A+ +D NT A+ + L R E+ D Sbjct: 345 SLNEAEGELFDKTTSISARFGEAMDDDFNTALAMAHVFDLVRCVNRVLSETAGASDNICS 404 Query: 381 ----LLPIFNASAHILGI---------EVCKEHLNKNISI---AIEKLVQERLILLKMKK 424 + A +LGI E K N+ I IE+L+ ER K K Sbjct: 405 LCTLIKAEVAKIAGVLGIFSSKPASFLERLKSRKAGNLDIAVDEIERLIAERTAARKAKD 464 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 F +D IR QL +K +L D Q+ T W K Sbjct: 465 FKRSDEIRDQLAAKNIVLLDS------QQGTTWSVK 494 >gi|154502843|ref|ZP_02039903.1| hypothetical protein RUMGNA_00658 [Ruminococcus gnavus ATCC 29149] gi|153796726|gb|EDN79146.1| hypothetical protein RUMGNA_00658 [Ruminococcus gnavus ATCC 29149] Length = 468 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 185/491 (37%), Positives = 254/491 (51%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ + EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTMSKTKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E I+ + ++ KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKANEE------GVTAEEISKRYIEECKKDMEGMNVKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEIGGMIDMIQTLIDKGYAYEKNGTVYYRTRKFEGYGKLSHKNLDDLQSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ + + W+HNGFLN++ RKMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEAANG-KDFSKYWLHNGFLNIDNRKMSKSLGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------------- 342 + V+R ML HYR P++F+ + + A+ L + + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKNGLERIVTAAEHLKFLLEGAKTENMTEKEQ 344 Query: 343 ----SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A+ +D NT AI A+ L + N D LL A Sbjct: 345 AKIVKSQEFTRKFEKAMDDDFNTADAIAAVFDLVKFINTNTDGESSKEYLQNLLSQLVAL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE + ++ IE L+ ER K + F+ AD IR +L +KG ILED + Sbjct: 405 TDVLGIIVEKEQ--EMLADDIEALIAERQAARKERNFARADEIRDELLAKGIILEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKR 467 >gi|51894254|ref|YP_076945.1| cysteinyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] gi|61216176|sp|Q67JP9|SYC_SYMTH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|51857943|dbj|BAD42101.1| cysteinyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] Length = 471 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 172/493 (34%), Positives = 247/493 (50%), Gaps = 59/493 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYN L RK +F ++P +R Y CGPTVYD+ HIGNAR +VFD + R L Y Sbjct: 1 MGIRIYNDLTRKKEDFVPLEPGKVRFYNCGPTVYDYFHIGNARNFVVFDTVRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+V+N TDIDD++I+RAR+ +S + + Q + D L Sbjct: 61 Q--VTFVQNFTDIDDRMIKRARER------GITVSELAEEMIQAYFADAGALGVRPADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 PRAT I + I +IQ +I GHAY ++ F ++ P+YG S + ++E G RV Sbjct: 113 PRATALIDEQIAMIQQLIDKGHAYVVEGGDVYFRVTTSPDYGKLSHKNLEELVAGASERV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF LWK P EP W +PWG GRPGWHIECSAM+ YLG DIH GG D Sbjct: 173 DPDDRKEHPFDFALWKGQKPGEPAWPAPWGPGRPGWHIECSAMARKYLGDTIDIHAGGED 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS + A W+HN L ++G KMSKS GNF T+ ++L Sbjct: 233 LTFPHHENEIAQSEAVTG-KPFARYWMHNAHLMIDGAKMSKSVGNFFTVRDIL------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------ 347 + + V+R+ +L HYR + F+ Q + + L + T + + Sbjct: 285 KRYDGEVVRMFLLSAHYRTQLSFSDQLMEDTRRALERLYNTVANLEHLAKTAPRAEMTAE 344 Query: 348 -----------DPAVLSALYNDLNTVSAIQALHKLARESTK----------NHDLLPIFN 386 ++A+ +D NT + + L+RE L + Sbjct: 345 EQAVLAELSQARERFVAAMDDDFNTAEGLAVIFDLSRELNSRVKPGASAAFAEGGLALLR 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A +LG+ + ++ + + IE L+ R K + F+ AD IR QL + G ILED Sbjct: 405 ELAGVLGL-LERKAQPQELDAEIEALIAARQEARKARNFAEADRIRDQLRAMGIILEDT- 462 Query: 447 NPDNGQRMTRWKQ 459 + RW++ Sbjct: 463 -----PQGVRWRR 470 >gi|82703002|ref|YP_412568.1| cysteinyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] gi|109894912|sp|Q2Y7U5|SYC_NITMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|82411067|gb|ABB75176.1| cysteinyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] Length = 464 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 255/478 (53%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L R+ EF + P +++YVCG TVYD+ H+G+AR M+VFD++ R R Sbjct: 2 LKIHNSLAREKQEFIPLTPGKVKVYVCGMTVYDYCHLGHARVMVVFDMVQRWFRA--NRF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ ++I +T++ Q +D L P+ +PR Sbjct: 60 DVTYVRNITDIDDKIIRRAQENK------ESIEALTARFIQAMEEDAAALGVEPPSWEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ MI +IQ ++ AY A N ++ + P YG S + +DE + G RV Sbjct: 114 ATRHVEDMIAMIQVLVDKKLAYPASNGDVYYAVHRFPGYGKLSGKSLDELRAGERVIVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 HK +P DF+LWK + P EP W+SPWG GRPGWHIECSAM HYLG+ FDIHGGG DL FP Sbjct: 174 HKNDPLDFVLWKAAKPGEPQWDSPWGPGRPGWHIECSAMGEHYLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ + KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSEGAHG-HPFVNYWMHNGFVRVNDEKMSKSLGNFFTVREILA-------HFQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP-----------AVL 352 V+R +L HYR P+++ +L +A L + + D Sbjct: 286 PEVVRFFILRAHYRSPLNYADMQLEDAGRALDRLYTALKGIEVHDEVEIDWDDPYASRFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGI---------EVCKEHL 401 A+ +D NT A+ L LA E K + + A +LG+ + Sbjct: 346 EAMNDDFNTPEALAVLFDLATEVNKTRLPRDIALMKALGGVLGLLQQDPWKYFQQADSED 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +E+L+Q+RL+ K + AD IRK+L ILED G T W++ Sbjct: 406 PAFAPEKVEQLIQQRLVARANKDYREADRIRKELMEANIILED------GPHGTTWRR 457 >gi|114777193|ref|ZP_01452204.1| cysteinyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] gi|114552338|gb|EAU54821.1| cysteinyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] Length = 459 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 194/480 (40%), Positives = 271/480 (56%), Gaps = 45/480 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNT++R+ F I P +I MYVCG TVYD+ H+G+AR MIVFDV+YR L + Sbjct: 1 MSLMLYNTIKREKEAFVPIRPGHIGMYVCGVTVYDYCHVGHARVMIVFDVIYRWLMHSGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRN TD+DDKII+RA + AI +T++ F D L CL PTH+ Sbjct: 61 D--VDYVRNFTDVDDKIIKRAAER------GIAIDALTNEMIDAFHADADALGCLRPTHE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT H+ MI +IQ ++ AY + ++++ +YG S +KIDE + G+RV Sbjct: 113 PRATAHMDAMISMIQALMEKDMAYVSESGDVLYAVRGFSDYGQLSGKKIDELESGSRVDV 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK + EP W SPWG+GRPGWHIECSAMS +LG FDIHGGG+DL Sbjct: 173 DQSKRDPLDFVLWKMAKADEPAWASPWGQGRPGWHIECSAMSCGHLGDTFDIHGGGMDLK 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ+ A+ A W+HNGF+N+ KMSKS GNF TI E+ E Sbjct: 233 FPHHENEIAQARAANGGG-FARYWLHNGFVNINAEKMSKSLGNFFTIREVTER------- 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------SKGIIDPA 350 + V+R+ ML THYR P+DF+ L A+ L + +T+ + ++ Sbjct: 285 YHPEVLRMFMLGTHYRSPLDFSDAALDVAKSGLDRLYKTAKRCQESGVTGAGGQALLPHH 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKEHL-- 401 +A+ +D NT A+ L +R K + L F A + +LGI + Sbjct: 345 FTTAMDDDFNTPEALAVLFDTSRALNKGLNEAQDVTALAGQFTAMSALLGIVQQDTAIWF 404 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + AIE L++ERL K + F+ AD IR +L ++G +LED + T WK+ Sbjct: 405 QSGDVDAAAIEALIEERLQARKNRDFARADAIRNELSAQGIVLEDSAS------GTTWKK 458 >gi|332800102|ref|YP_004461601.1| cysteinyl-tRNA synthetase [Tepidanaerobacter sp. Re1] gi|332697837|gb|AEE92294.1| cysteinyl-tRNA synthetase [Tepidanaerobacter sp. Re1] Length = 466 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 182/488 (37%), Positives = 257/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF ++ ++++MY CGPTVYDF HIGNAR I FD++ L++ + Sbjct: 1 MLIYNTLTRKKEEFVPLEDNHVKMYTCGPTVYDFFHIGNARVFITFDMVRNYLKFRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I+RA E + + + ++ D L PR Sbjct: 60 -VTFVQNFTDIDDKMIKRANDE------GITVKELGERFIGEYFHDADTLGITRADVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I LI+ ++ G+AYE N ++ + TS +YG S + IDE K G R+ Sbjct: 113 ATEHIDEIIDLIKILVEKGYAYEVNGDVYYKTSRFKDYGKLSHQNIDELKAGARIEPGEQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK P EP W+SPWG+GRPGWHIECS M+ YLG+ DIHGGG DLIFPH Sbjct: 173 KKDPIDFALWKAQKPGEPAWDSPWGKGRPGWHIECSVMAMKYLGETIDIHGGGPDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A ++H G+LN+ +KMSKS GNF T+ ++L+T + Sbjct: 233 HENEIAQSEAATG-KPFARFFMHVGYLNINNQKMSKSLGNFFTVRDILKT-------YDP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------------- 348 V+R ML +HYR PI+F+ + +A+ L + S ++ Sbjct: 285 EVLRFFMLSSHYRNPINFSQDLMEQAKNSLERLHNAIYSMEHLESVAQDKDLAEDDEKYL 344 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + A+ +D NT AI +L + RE D + Sbjct: 345 NKLETNKNEFIKAMDDDFNTADAIASLFNIVREYNMFVDENSPKKLIVDTKDAILTLGSV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ K + IE+ + ER K K ++ AD IR L+++G ILED Sbjct: 405 LGL-FRKFMEKTLLDEEIEQKIIEREQARKEKNYALADKIRDDLKAQGIILEDT------ 457 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 458 PAGVRWKR 465 >gi|310659543|ref|YP_003937264.1| cysteinyl-tRNA synthetase [Clostridium sticklandii DSM 519] gi|308826321|emb|CBH22359.1| cysteinyl-tRNA synthetase [Clostridium sticklandii] Length = 466 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 182/487 (37%), Positives = 267/487 (54%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F ++ + I+MYVCGPTVY+F HIGNARP ++FD + Y E Sbjct: 1 MKIYNTLTRQKETFIPLEENKIKMYVCGPTVYNFFHIGNARPFMIFDAFRNYMEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKII+RA +E + + K ++ KD L T PR Sbjct: 60 -VTYVQNFTDVDDKIIKRANEE------GISPIEVAEKYIAEYFKDADALGIKRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I +I I+++I G AYE N ++ F++ + YG S++ ++E +G R+ Sbjct: 113 VTENIENIITFIEDLISKGFAYELNGDVYFNSQAYKEYGKLSKQNLEELNLGARIDVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK E GW+SPWG GRPGWHIECS MS+ YLG DIH GG DLIFPH Sbjct: 173 KKHPIDFALWKAKKEGEIGWQSPWGEGRPGWHIECSVMSARYLGDTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+HNG++N++ +KMSKS GNF T+ ++L + Sbjct: 233 HENEIAQSEARSG-KQFARYWMHNGYINVDNQKMSKSLGNFFTVRDILS-------EFSG 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------------QTST 342 VIR +L HYR P++F+ + + +A+ + + + + Sbjct: 285 QVIRFFLLSAHYRNPVNFSKELILQAKAGMERLANSKERLVFTISHAKGQMNESELELVS 344 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHIL 392 + + A+ +D+NT AI + +LAR S N L +FN +L Sbjct: 345 ALENHRDRFIEAMDDDINTADAISIIFELARFSNTNVTENSSLEWAEKNLSLFNELTGVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 I + E + N + IEKL+++R+ K K F+ AD IR +L+S G +ED + Sbjct: 405 NI-IKAEDTDSNDNEQIEKLIKDRVEAKKNKDFALADAIRDELKSMGIEIEDTR------ 457 Query: 453 RMTRWKQ 459 + T+WK+ Sbjct: 458 QGTKWKK 464 >gi|163816509|ref|ZP_02207873.1| hypothetical protein COPEUT_02698 [Coprococcus eutactus ATCC 27759] gi|158448209|gb|EDP25204.1| hypothetical protein COPEUT_02698 [Coprococcus eutactus ATCC 27759] Length = 463 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 196/486 (40%), Positives = 257/486 (52%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL R+ EF+ I+ + +YVCGPTVYD+ HIGNARPMIVFD L R L Y E Sbjct: 1 MKILNTLTRRKEEFKPINEGKVGIYVCGPTVYDYIHIGNARPMIVFDTLRRYLEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA E S+I+ + + KD L T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANAE------GVDASVISERYIAEVKKDMAALNVREATTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT IP MI +++ +I +AYE N + F T +YG S++ ID+ + G R V Sbjct: 113 ATEEIPDMIEMVKTLIEKDYAYEVNGTVYFRTRKFKDYGKLSKKNIDDLRSGNRDLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W SPWG GRPGWH+ECS MS Y+G V DIH GG DLI Sbjct: 173 IDEKEDPLDFVLWKPKKEGEPSWPSPWGDGRPGWHLECSVMSKKYIGDVIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFL + KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGTE-FARYWMHNGFLKINNEKMSKSLGNFFTVREIAE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------KGIIDPAVL-- 352 +P VIR ML HYR P++F+ + + ++ L + G +D +V Sbjct: 285 YPLQVIRFFMLSAHYRSPLNFSAELVEASKNGLERILTAVDRLKSINGIDGDVDKSVADE 344 Query: 353 ---------SALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHILG 393 A+ +DLNT AI + +L + + N +L ILG Sbjct: 345 MDAFVKKYEDAMDDDLNTADAISVIFELVKYANVNVTEESSKATVELVLNTIEKLCDILG 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I E + + IE L++ER K K F+ AD IR QL S G ILED + Sbjct: 405 I--ITEKKEEILDSDIEALIEERQAARKAKNFARADEIRDQLSSMGIILEDTR------E 456 Query: 454 MTRWKQ 459 +WK+ Sbjct: 457 GVKWKR 462 >gi|308390183|gb|ADO32503.1| cysteinyl-tRNA synthetase [Neisseria meningitidis alpha710] Length = 699 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 287 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 288 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 341 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 342 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 401 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 402 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 461 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 462 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 521 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 522 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 574 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 575 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 634 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 635 DPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 690 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 691 --AGGTTWRR 698 >gi|325267558|ref|ZP_08134210.1| cysteine--tRNA ligase [Kingella denitrificans ATCC 33394] gi|324980908|gb|EGC16568.1| cysteine--tRNA ligase [Kingella denitrificans ATCC 33394] Length = 487 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 178/489 (36%), Positives = 259/489 (52%), Gaps = 51/489 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 I +YNTL R+ EF ++P N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 14 NMPITLYNTLTRQKEEFVPLNPENVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQHG 73 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 +TYVRNITDIDDKII RA + + I +T++ +D+ L L P Sbjct: 74 Y--PLTYVRNITDIDDKIIARANEN------GETIGELTARFIAAMNEDSDALGVLRPDI 125 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI QMI +I++++ +G AY A N ++ + YG S + +D+ + G RV Sbjct: 126 EPKATEHIGQMIAMIEDLVANGKAYPAPNGDVYYAVREFAEYGQLSGKSLDDLRAGERVD 185 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK + P EP WESPWG GRPGWHIECSAM G+ FDIHGGG DL Sbjct: 186 VDANKRDPLDFVLWKAAKPGEPSWESPWGNGRPGWHIECSAMGGELFGQTFDIHGGGADL 245 Query: 241 IFPHHENEIAQSCCADRI--------------EKTANIWIHNGFLNLEGRKMSKSNGNFI 286 FPHHENEIAQSC A W+HNGF+ ++ KMSKS GNF Sbjct: 246 QFPHHENEIAQSCGAHGGLCGHDAPHAAGKRINSHVKYWLHNGFIRVDNEKMSKSLGNFF 305 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI 346 TI ++L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 306 TIRDVL-------KKYAPEVVRFFILRAHYRSPLNYSDAHLDDAKNSLARLYNTLGNVQA 358 Query: 347 IDPA-----------VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILG 393 + A +A+ +D NT A+ L +LA E+ K + +L A LG Sbjct: 359 AEFAVREDANDYTRRFFAAMDDDFNTAEAMSVLFELANEANKTGSAELAGCLKALGGTLG 418 Query: 394 IEVCK--------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + + IE L+ +R + K ++ +D IR L +L+D Sbjct: 419 LLQDDPQHFLQSGGEEGGLSADEIEALITQRKTARETKNWAESDRIRDLLAEHKILLKDG 478 Query: 446 KNPDNGQRM 454 + R Sbjct: 479 ADGTTWTRG 487 >gi|209548641|ref|YP_002280558.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226710847|sp|B5ZWB3|SYC_RHILW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|209534397|gb|ACI54332.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 463 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 266/458 (58%), Positives = 338/458 (73%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++K+YNTL R+ T F IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 5 PELKLYNTLTREETVFAPIDPDNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTY RNITD+DDKI RA ++HP +P+N AI +T + QF D L CL P+ + Sbjct: 65 EDHVTYARNITDVDDKINARALRDHPGLPLNQAIRAVTERTETQFHADVAELGCLEPSVE 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT++I +M +I+ +I +GHAY A E++FDT S+ +YG S+R +DEQ+ G R+ Sbjct: 125 PRATDNIVEMTEIIEKLIGNGHAYVAAGEVLFDTKSMADYGQLSKRPLDEQQAGARIAVD 184 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HKKN DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIF Sbjct: 185 AHKKNSGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGDVFDIHGGGLDLIF 244 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA E ANIW+HNGFL +EGRKMSKS GNF+TI++LL T+ FGGR W Sbjct: 245 PHHENEIAQSRCAHGTEVMANIWMHNGFLQVEGRKMSKSEGNFVTIHDLLHTQIFGGRKW 304 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362 P V+RLAMLMTHYREPIDF+++RL EAE LL+KWP T D VL+AL ++LNTV Sbjct: 305 PGEVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPATEPGDAEPDETVLNALADNLNTV 364 Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422 +A+QALH LA+ + + F A+A +LG+ K +++ ++ A++ LV RL +LK Sbjct: 365 AAVQALHALAQAAHTDPAAGARFAATAALLGLLPKKAEIDEAVAAAVDALVAMRLEMLKA 424 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K F+ AD IR +L +KG L+D K+ G+R+T W+ K Sbjct: 425 KNFAEADKIRDELTAKGIQLKDGKDAATGERVTTWEVK 462 >gi|146295747|ref|YP_001179518.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|187629798|sp|A4XHE2|SYC_CALS8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145409323|gb|ABP66327.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 465 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 182/480 (37%), Positives = 252/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E + + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKE------GITVFELAERFIQEYYKDADRLNVRRATKSPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I++ G RV Sbjct: 113 ATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEDLMAGARVDPSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWNSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEAATG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------QTSTS 343 +RL ML HYR+P++F++ + +AE+ L + + + Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLIQNAASSSENDDKLKAA 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + + I ILGI Sbjct: 345 IEELKAKFIDAMEDDLNTAEATGYLFEMVREINTHANSCSKETLTFAKDILKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I I +LV++R K K F AD IR +L+S G+I+ D +R+ Sbjct: 405 LEQYSAKEEAIPQEILELVEKRNQARKAKNFLEADRIRDELKSLGYIVLDTPQGTKVERI 464 >gi|316983974|gb|EFV62953.1| cysteinyl-tRNA synthetase [Neisseria meningitidis H44/76] Length = 587 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 118 IYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 175 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 176 TYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEPKAT 229 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 230 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 289 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 290 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 349 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 350 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 409 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 410 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 462 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 463 PSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGLLQR 522 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 523 DPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 578 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 579 --AGGTTWRR 586 >gi|170721588|ref|YP_001749276.1| cysteinyl-tRNA synthetase [Pseudomonas putida W619] gi|229558806|sp|B1J805|SYC_PSEPW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169759591|gb|ACA72907.1| cysteinyl-tRNA synthetase [Pseudomonas putida W619] Length = 460 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 177/478 (37%), Positives = 252/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR E Sbjct: 2 LTIYNTLSKTKEVFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILKPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPYWDSPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLDV-------YH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEEFVERFSVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D T A L L RE + D L +LG+ + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDPDAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEALIQARLQARADKNWAESDRIRDQLTAMGVVLEDSK------GATTWR 457 >gi|316934832|ref|YP_004109814.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] gi|315602546|gb|ADU45081.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] Length = 463 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 226/468 (48%), Positives = 305/468 (65%), Gaps = 20/468 (4%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL ++ F +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTLTKEKRTFAPLDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT + Sbjct: 61 EGHVKYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKM 175 PRAT HI +M +I ++ G AY + ++F ++ P YGS + R +DE Sbjct: 121 PRATEHIGEMRSIIDKLVAGGFAYVEQDHVLFSPGAMNAANGVLPRYGSLANRSLDEMIA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFD 232 G RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATPGRPGWHIECSAMSWKHLGETFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG+DL+FPHHENE+AQSCCA + A W+HNGFL +EG KMSKS GNFITI ELL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTSRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELL 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAV 351 T+KFGGRSW +RLAML THYR+PID+TV L EAE + W + T + V Sbjct: 301 ATEKFGGRSWDGATLRLAMLKTHYRQPIDWTVDALHEAEKAILDWSEFTKDATPARCDEV 360 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-EVCKEHLNKNISIAIE 410 ++AL +DLNT I LH L R + +LL +LGI V ++ ++ I + Sbjct: 361 IAALTDDLNTPKMIAELHALRRAG-RAQELLGAL----QLLGIGRVFRQSID--IGVNAR 413 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 L++ R K + +D IR +L + G +L+D K+ +NG+ +T W+ Sbjct: 414 ALIEARTAARANKDWKESDRIRDELAAMGVVLKDGKD-ENGKPVTTWE 460 >gi|157690877|ref|YP_001485339.1| cysteinyl-tRNA synthetase [Bacillus pumilus SAFR-032] gi|187629792|sp|A8F962|SYC_BACP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157679635|gb|ABV60779.1| cysteine--tRNA ligase [Bacillus pumilus SAFR-032] Length = 466 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 169/489 (34%), Positives = 257/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL RK EF ++P ++MYVCGPTVY++ HIGNARP IV+D + + L Y Sbjct: 1 MTINIYNTLTRKKEEFVPLEPGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRKYLEYSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I+ A + + + + I + Q + +D + L C Sbjct: 61 D--VNFVSNFTDVDDKLIKAANE------LGEDVPTIADRFIQAYFEDVSALGCKKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I I+ +I G+AYEA+ ++ + T S YG S + IDE K G R+ Sbjct: 113 PRVTENMDDIIAFIETLIEKGYAYEADGDVYYSTRSFEGYGKLSHQSIDELKTGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKRDALDFALWKAAKNQEISWDSPWGEGRPGWHIECSAMVKKYLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+E KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KPFAKYWMHNGYINIENEKMSKSLGNFVLVHDIV-------KEQ 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI++++ L + ++ + + Sbjct: 285 DPDVLRFFMLSVHYRHPINYSMDLLESTKSAFNRLKTSYANLHHRLESSTNITEDNAKWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAH 390 +S + +D NT +AI L +LA+++ + + +F Sbjct: 345 AKVEEQRATFISEMNDDFNTANAISVLFELAKQANYYMENDHTSEEVIKAFIGLFQEITS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++H + +E L+++R + + F+ +D IR QL+S +LED Sbjct: 405 VLGFSLEEKHT---LEKEVEALIEQRNEARRNRDFALSDQIRDQLKSMNIVLEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -PQGTRWKR 464 >gi|282857764|ref|ZP_06266973.1| cysteine--tRNA ligase [Pyramidobacter piscolens W5455] gi|282584434|gb|EFB89793.1| cysteine--tRNA ligase [Pyramidobacter piscolens W5455] Length = 474 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 180/493 (36%), Positives = 252/493 (51%), Gaps = 59/493 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN L RK F + + Y CGPTVYD+ HIGNARP IVFDVL R L + E Sbjct: 3 LALYNDLTRKKEPFVPLHEGKVAFYSCGPTVYDYFHIGNARPFIVFDVLRRYLEFRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I RA ++ + + K + +D L + PR Sbjct: 62 -VTFVQNFTDIDDKMIARANRD------GVTVQQLAEKTIADYYEDADALGIKRASFYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +IP++I +IQ II +GHAY A+ + FD S P YG S + +D+ + G R+ Sbjct: 115 ATEYIPKIIAMIQRIIDNGHAYVADGTVFFDVKSFPAYGKLSHQNLDDLQSGARIEVDDV 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK P EP WESPWG GRPGWHIECSAMS+ LG DIH GG+DL+FPH Sbjct: 175 KRSPLDFVLWKPQKPGEPAWESPWGLGRPGWHIECSAMSTDLLGDTVDIHTGGIDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + W+HN ++ + KMSKS GNF+T + +P Sbjct: 235 HENEIAQTEAATG-KPFVKYWLHNEYILINAEKMSKSLGNFLTARAAR-------QKFPP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------------------TST 342 IR+ ML HYR PI+FT + L +A + + Sbjct: 287 LAIRMFMLGAHYRSPINFTPEGLEQAAAAVERLRNCWSDLQFAKGGRLGETSAAGAALMA 346 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK---------------NHDLLPIFNA 387 + +A+ +D NT +AI + + E K ++ Sbjct: 347 ALDTFRADFTAAMDDDFNTAAAIGVIFEAVTEVNKYLKGNEKLDPAAVAAAEKFFGDIDS 406 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I+GIE K+ + + + IE L+ ER K + F +D IR +L ++G ILED Sbjct: 407 VMGIIGIEQEKKEESGDEAARIEPLIAERNAARKARDFKRSDAIRDELAAQGIILEDT-- 464 Query: 448 PDNGQRMTRWKQK 460 + T+WK+K Sbjct: 465 ----PQGTKWKKK 473 >gi|121635739|ref|YP_975984.1| cysteinyl-tRNA synthetase [Neisseria meningitidis FAM18] gi|120867445|emb|CAM11217.1| cysteinyl-tRNA synthetase [Neisseria meningitidis FAM18] Length = 699 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 287 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 288 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 341 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 342 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 401 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 402 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 461 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 462 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 521 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 522 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 574 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 575 PSEADDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 634 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 635 DPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 690 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 691 --AGGTTWRR 698 >gi|167033877|ref|YP_001669108.1| cysteinyl-tRNA synthetase [Pseudomonas putida GB-1] gi|187629853|sp|B0KUU0|SYC_PSEPG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166860365|gb|ABY98772.1| cysteinyl-tRNA synthetase [Pseudomonas putida GB-1] Length = 460 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 252/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D + +RMYVCG TVYD+ H+G+ R M+ FD++ R LR + Sbjct: 2 LTIYNTLSKAKETFKPLDGNKVRMYVCGMTVYDYCHLGHGRSMVAFDLVTRWLRKSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + +T++ +D RL L P +PR Sbjct: 61 -LTYVRNITDIDDKIINRANEN------GETFDALTARMIDAMHEDERRLNILPPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIAGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFVGYGKLSRKKIEDLRIGARIEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKGVKPGEPSWESPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A ++ AN W+H G + + G KMSKS NF TI ++LE + Sbjct: 234 HHENEIAQSEAATG-KQYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLE-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +A+ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDAKGALERFYHALRGLPRVAAKGGEAFVERFSMAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------ 401 +D T A L L RE + D L +LG+ + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRDSDLEAAAGLAGRLRELGDVLGVLQLEADDFLRAGA 405 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+Q RL K ++ +D IR QL + G +LED K T W+ Sbjct: 406 EGKVDAAEVEGLIQARLQARTDKNWAESDRIRDQLTAMGVVLEDSK------GATTWR 457 >gi|319790489|ref|YP_004152122.1| cysteinyl-tRNA synthetase [Thermovibrio ammonificans HB-1] gi|317114991|gb|ADU97481.1| cysteinyl-tRNA synthetase [Thermovibrio ammonificans HB-1] Length = 472 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 200/486 (41%), Positives = 266/486 (54%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + EF+ ++ ++MYVCGPTVYD AHIG+AR +VFDV+ R L Y Sbjct: 2 IKVTNTLTERKEEFKPLEGKTVKMYVCGPTVYDHAHIGHARSAVVFDVIRRWLEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN TD+DDKII+R+++E ++ K + +D L PT++P+ Sbjct: 60 RVIFVRNYTDVDDKIIKRSKEEGIPWY------EVSKKYIASYEEDMEALNVKEPTYKPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I +I +I GHAYEA+ ++ F S P YG S+RK +E G RV Sbjct: 114 VTEHIREIIEMIDGLIQKGHAYEADGDVYFSVESFPEYGKLSKRKTEELLAGARVEPGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+S EPGWESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 174 KKNPLDFALWKKSKEGEPGWESPWGVGRPGWHIECSAMSMKYLGETIDIHGGGFDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A WIHNGF+ + KMSKS GNF TI E+L + + Sbjct: 234 HENEIAQSESYTG-KTFARYWIHNGFVMVNREKMSKSLGNFFTIKEIL-------KQFSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 +RL +L THYR PIDFTV+RL EAE L + S ++ Sbjct: 286 DTLRLFLLSTHYRSPIDFTVERLKEAERALKRLTTFIESVKAVEKLPEEGEKGEPIDVES 345 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------PIFNA------S 388 +A+ +D NT A+ AL++L + + D + +A + Sbjct: 346 ARREFEAAMDDDFNTAKALGALYELVKRANTLKDKALKRQKITPSERESLVDAARFTENA 405 Query: 389 AHILGIEVCKEHLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 LG ++ +E + A IE L+Q R L K K+F AD IR +L+ G LED Sbjct: 406 LKTLGFKLEREQSEGGLEEALIELLIQVRGELRKKKEFQLADLIRDRLKELGITLEDLPT 465 Query: 448 PDNGQR 453 +R Sbjct: 466 GTVYRR 471 >gi|39998454|ref|NP_954405.1| cysteinyl-tRNA synthetase [Geobacter sulfurreducens PCA] gi|61216254|sp|Q747A2|SYC_GEOSL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|39985401|gb|AAR36755.1| cysteinyl-tRNA synthetase [Geobacter sulfurreducens PCA] Length = 481 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 194/501 (38%), Positives = 264/501 (52%), Gaps = 67/501 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +F ++P ++MYVCG TVYD HIG+AR +VFD++YR LR+ E Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA +E + I+ + +F +D L PT+QP+ Sbjct: 62 -VTYVRNYTDVDDKIINRANKEGVPFNV------ISERFIAEFDRDMAALGLDLPTYQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +I+ ++ G AY A+ ++ F + Y S+R ++E + G R+ Sbjct: 115 ATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A WIHNGF+N+ KMSKS GNF TI E+LE S+ A Sbjct: 235 HENEIAQSEAANG-KPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLE-------SYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA--- 350 V+R +L HYR PIDF+ Q L EA L + T G ID Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGRIDEELAE 346 Query: 351 --------VLSALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNASAHI 391 A+ +D NT A+ + L R + + + Sbjct: 347 KAAGLPTRFREAMDDDFNTAQALGYVFDLVRAVNRVLAEGEIDRAVLASAREAIDRVGAV 406 Query: 392 LG------------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 LG ++ K + IE+L++ER K + F AD IR L ++G Sbjct: 407 LGLFTSEPGAFVERLKSRKAAALPIEAAEIERLIEERNAARKARDFRRADEIRDTLAAQG 466 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 467 ILLLDS------AQGTTWKVK 481 >gi|294788619|ref|ZP_06753861.1| cysteine--tRNA ligase [Simonsiella muelleri ATCC 29453] gi|294483496|gb|EFG31181.1| cysteine--tRNA ligase [Simonsiella muelleri ATCC 29453] Length = 475 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 178/489 (36%), Positives = 259/489 (52%), Gaps = 54/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ IDP N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 2 LYLYNTLTRQKERFEPIDPKNVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQHGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA Q + I +T + Q +D+ L L P +P+ Sbjct: 60 PLTYVRNITDIDDKIIARANQN------GETIQQLTERFIQAMNEDSQALGVLRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI QMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 114 ATEHIAQMIQMIEKLIENGKAYPAENGDVYYAVREFDAYGQLSGKSLDDLRAGERVEVDG 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM G+ FDIHGGG DL FP Sbjct: 174 FKRDPLDFVLWKAAKPEEPSWASPWGNGRPGWHIECSAMGGELFGQTFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRI---------------EKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENEIAQSC A+ + W+HNGF+ ++ KMSKS GNF TI Sbjct: 234 HHENEIAQSCGANGGLCGHNKPVSGSLKKIDSHVKYWLHNGFIRVDNEKMSKSLGNFFTI 293 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID 348 ++L + + V+R +L HYR P++++ L +A+ L++ T + I+ Sbjct: 294 RDVL-------KKYQPEVVRFFILRAHYRSPLNYSDAHLDDAKNSLTRLYNTLNNVKPIE 346 Query: 349 -------------PAVLSALYNDLNTVSAIQALHKLARESTKN--HDLLPIFNASAHILG 393 +A+ +D T A+ L ++A E+ KN +L +LG Sbjct: 347 FKLDSNGNNNDYTHKFFNAMNDDFGTAEAVSVLFEIANEANKNDSAELSGCLKTLGGVLG 406 Query: 394 IEVCKEH--------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + ++ + I KL+ +R I + K ++ +D IR L ++D Sbjct: 407 LLQDNPEQFLQGGNNVDGLSADEINKLISQRKIARETKNWAESDRIRDILAEHKIQVKDS 466 Query: 446 KNPDNGQRM 454 + R Sbjct: 467 ADGTTWTRG 475 >gi|83644974|ref|YP_433409.1| cysteinyl-tRNA synthetase [Hahella chejuensis KCTC 2396] gi|109894904|sp|Q2SK40|SYC_HAHCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83633017|gb|ABC28984.1| cysteinyl-tRNA synthetase [Hahella chejuensis KCTC 2396] Length = 467 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 175/481 (36%), Positives = 255/481 (53%), Gaps = 48/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY++L ++ EF+ I + +YVCG TVYD+ H+G+AR ++ FD++ R LR + Sbjct: 2 LKIYSSLSQQKEEFKPIQAGKVGIYVCGMTVYDYCHLGHARVLVCFDIITRYLRAKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI+ RAR +++ +T++ +D L L+PT +PR Sbjct: 61 -VNYVRNITDVDDKILNRARDN------GESVDALTARFIDAMHEDERALGVLSPTSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I +IQ ++ G+AY +N ++ + +YG S++K+DE + G R+ Sbjct: 114 ATGHIDEIIAMIQRLMDKGYAYHASNGDVYYSVEQFADYGKLSKQKLDEIRAGARIEVDA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK + P E W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 EKRSPADFVLWKAAKPGELSWDSPWGEGRPGWHIECSAMSTRCLGDTFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+H G + + KMSKS GNF TI E+L+ +P Sbjct: 234 HHENEIAQSEAATGCK-YVNYWMHAGAVRVNKEKMSKSLGNFFTIREILD-------KYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--------------GIIDP 349 A V+R + +HYR ID++ L EA L + + G Sbjct: 286 AEVVRYFLASSHYRSAIDYSDVALEEARSGLERLYNSIRELYGELGAVSMDEPLVGEYRE 345 Query: 350 AVLSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK--- 398 A+ +D NT SA+ L +A+ + L A +LG+ Sbjct: 346 RFHQAMDDDFNTSSAVAVLFDMAKAVNVAKKEDRTRALSLAKGMVDLAEVLGLLQADPES 405 Query: 399 ------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E + IE + +R K F+ +D IR L+ KG +L D + + Q Sbjct: 406 LMQGEGEEVGGLSVAEIEDFIAQRNAARANKDFAESDRIRDLLKEKGVLLNDSREGTSWQ 465 Query: 453 R 453 R Sbjct: 466 R 466 >gi|294101993|ref|YP_003553851.1| cysteinyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] gi|293616973|gb|ADE57127.1| cysteinyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] Length = 472 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 170/492 (34%), Positives = 245/492 (49%), Gaps = 56/492 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YN L RK F + + Y CGPTVYDF HIGNARP IVFDV R L Sbjct: 1 MSLMLYNDLTRKKEPFIPLKEGEVGFYSCGPTVYDFFHIGNARPFIVFDVFRRYLEDIGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V+N TDIDDK+I RA +E + + +++ +D L Sbjct: 61 K--VVFVQNFTDIDDKMINRANEE------GITVKELADAFIKEYFEDADALGVRRADIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT+H+ +++ ++Q +I GHAY + ++ F S P YG S++ I++ + G+R+ Sbjct: 113 PRATDHMKEIVEVVQTLIDKGHAYVVDGDVFFSVESFPGYGKLSKQSIEDLQSGSRIDVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK P EP WESPWG GRPGWHIECS MS+ YLG FDIH GG DLIF Sbjct: 173 EQKRHPLDFALWKAQKPGEPAWESPWGLGRPGWHIECSVMSTKYLGNTFDIHSGGSDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQ+ A + + W+HNG+L ++ KMSKS GNF+T+ + + Sbjct: 233 PHHENEVAQAEAATGM-QFVRFWLHNGYLLIDKEKMSKSLGNFLTVRNAR-------KKY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----------------- 345 IR ML HYR PI+F+ + L +A + + T Sbjct: 285 SPLAIRYFMLSAHYRSPINFSEEGLNQATGAVERLRNCWTDLEYALQSREQKEKDDTEAF 344 Query: 346 -----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNAS 388 + + +D NT A+ ++ ++ R F Sbjct: 345 LSEIKQAETKFYEEMNDDFNTAGALGSVFEVVRLINTYLKDNSSIDFKVCKAAQTFFTKI 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I+GI + + + IE +++ER K + F+ +D IR QL KG ILED Sbjct: 405 DGIMGIMGLESEKEELDTSEIESMIEERTAARKARDFAKSDAIRDQLAEKGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 T+WK++ Sbjct: 462 ---PEGTKWKKQ 470 >gi|217976332|ref|YP_002360479.1| cysteinyl-tRNA synthetase [Methylocella silvestris BL2] gi|254781685|sp|B8EMY2|SYC_METSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|217501708|gb|ACK49117.1| cysteinyl-tRNA synthetase [Methylocella silvestris BL2] Length = 449 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 218/461 (47%), Positives = 291/461 (63%), Gaps = 14/461 (3%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++ YNTL R+ F IDP+++R+Y CGPTVYD HIGN R +IVFD+L+RLLR+ YG Sbjct: 1 MSLRFYNTLTRQKEAFTPIDPADVRVYACGPTVYDHLHIGNGRMLIVFDLLFRLLRHVYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRNITD+DDKI RA + I ++T + T F +D L CL PT + Sbjct: 61 KDHVRYVRNITDVDDKINARAAER------GVDIRVLTDEMTAIFHEDAAGLGCLPPTVE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT H+ +MI +IQ +I G AY A ++FD ++P+YG+ S+R +D+ G RV Sbjct: 115 PRATEHMAEMIAIIQKLIDKGAAYIAEGHVLFDVPAMPDYGALSKRPLDDMIAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K+ P DF+LWK + P EPGWESPWGRGRPGWHIECSAMS +LG+VFDIHGGG+DL+F Sbjct: 175 PYKRGPMDFVLWKPAAPSEPGWESPWGRGRPGWHIECSAMSWRHLGEVFDIHGGGIDLVF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ CA A++W+HNG L +EG KMSKS GNF+TI+ELL + FGGR W Sbjct: 235 PHHENEIAQTRCAFGHSVMAHVWMHNGHLQVEGEKMSKSLGNFVTIHELLNSDSFGGRKW 294 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--TSKGIIDPAVLSALYNDLN 360 P V+RLAML THYR+PIDFTV+ L EAE LS+W + D + AL +DLN Sbjct: 295 PGAVLRLAMLRTHYRQPIDFTVKALEEAERTLSEWRHAAEGAEPEAPDANFIDALSDDLN 354 Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420 T AI LH L + L + + + + L ++ I L+ ER Sbjct: 355 TPRAISELHAL-KAKRPGALLGGLALLGVDLADLGEEERALPRSAFEQIMALIAEREAAR 413 Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 + K ++ +D +R +L + G +L+D K T W+ KP Sbjct: 414 QHKNWAESDRLRDKLAAMGVVLKDNKGGA-----TSWELKP 449 >gi|152973937|ref|YP_001373454.1| cysteinyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|187629791|sp|A7GK01|SYC_BACCN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|152022689|gb|ABS20459.1| cysteinyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98] Length = 465 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 175/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ ++MYVCGPTVY++ HIGNARP +VFD + R L + Sbjct: 1 MTIHIYNTLTRQKEEFIPLEEKKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEHKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIAERFIEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ + T YG S + I++ + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYYRTKEFEGYGKLSHQAIEDLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLSF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KPFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + T Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTTYRNLKHRIESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A +A+ +D NT +AI L+ LA + + + Sbjct: 345 AEMKEFQSAFEAAMDDDFNTANAITELYNLANHANQYLLEEHTSKVVIEAYINQLEMLFR 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+ KE L + IE L+Q+R+ K + F+ AD IR L+ + ILED Sbjct: 405 ILGLVFTKEEL---LDKEIEALIQKRIEARKNRDFALADKIRDDLKERNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|319409608|emb|CBY89907.1| cysteinyl-tRNA synthetase (cysteine-tRNA ligase; CysRS) [Neisseria meningitidis WUE 2594] Length = 699 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 287 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 288 TYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEPKAT 341 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 342 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 401 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 402 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 461 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 462 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 521 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 522 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 574 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 A+ +D +TV A+ L +LA E K +D L A I+G Sbjct: 575 PSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGLLQR 634 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + I+ L+ R K ++ +D IR L ILED Sbjct: 635 DPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 690 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 691 --AGGTTWRR 698 >gi|315127193|ref|YP_004069196.1| cysteinyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] gi|315015707|gb|ADT69045.1| cysteinyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] Length = 459 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 174/479 (36%), Positives = 262/479 (54%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ + Sbjct: 2 VQIYNTLTRQKEEFKPMVDGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + +AI+ +T + T+ +D L L P +P Sbjct: 61 -LKYVRNITDVDDKIIKRANEN------GEAINDLTVRMTKAMHEDFDSLNMLRPDIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +++ +I GHAY A + +++FD S+ YG+ S++ + + G+RV Sbjct: 114 VTGHMDEIIAMVERLIAKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECSAMSS +LG+ FDIHGGG DL FP Sbjct: 174 DKDDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA+ + N WIH G + + KMSKS NF T+ E+L + + Sbjct: 234 HHENEIAQSCCANNG-QYVNTWIHTGMVQVNKEKMSKSLDNFFTVREVL-------KQYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLSA 354 A +R ++ HYR ++++ + L +A L + ++ A Sbjct: 286 AESVRYFLISGHYRSQLNYSQENLDQARSSLERIYTALRGVEPVECELEGNEYVAKFRKA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEH 400 + +D N+ A+ + ++A+E + D L I + ILGI + Sbjct: 346 MNDDFNSPEALPVVFEVAKELNRVKDSDSEKAGHLAFILRSLGEILGIAQQAPEAFLQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + IE L+ +R K +++AD R L + G +LED T W++ Sbjct: 406 QNDDEVAEIEALIVKRNDARASKNWAAADEARDALNALGVVLEDS------AGKTTWRK 458 >gi|304388715|ref|ZP_07370773.1| cysteine--tRNA ligase [Neisseria meningitidis ATCC 13091] gi|304337279|gb|EFM03455.1| cysteine--tRNA ligase [Neisseria meningitidis ATCC 13091] Length = 699 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--LL 287 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 288 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 341 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 342 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 401 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 402 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 461 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 462 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 521 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 522 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 574 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 575 PSEADDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 634 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 635 DPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 690 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 691 --AGGTTWRR 698 >gi|332306241|ref|YP_004434092.1| cysteinyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173570|gb|AEE22824.1| cysteinyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 464 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 253/484 (52%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F + S + +YVCG TVYD +H+G+AR + FD++ R LR+ E Sbjct: 2 LHIYNTLTRQKELFTPLHESKVGLYVCGITVYDLSHMGHARTYLSFDLMVRYLRHKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + +T + D + L P +PR Sbjct: 61 -VNYVRNITDIDDKIIQRANEN------GETTRALTERTIAMMHDDFAAINLLEPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+P++I +I+ +I GHAY+A + +++FD SS +YG S++ +++ MG+RV Sbjct: 114 VTTHMPEIIAIIERLIQRGHAYQAKSGDVLFDVSSYSDYGKLSKQDLEQLNMGSRVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK P EP W SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DLIFP Sbjct: 174 DKDDPMDFVLWKTVKPGEPSWSSPWGEGRPGWHIECSAMNQKHLGEHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H G + ++ KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCAYDT-PYVNYWVHAGMVQVDSEKMSKSLGNFFTLRDVL-------KQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVLS 353 A +R ++ HYR + ++ +T+A L + Q G Sbjct: 286 AETLRYFLMSAHYRSQLSYSEDNITQARSALERLYTALRDVNANIQVDMQSGDYLARFDK 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-----------DLLPIFNASAHILGIE------- 395 A+ +D NT A+ L +A+E K DL I +LGI Sbjct: 346 AMDDDFNTPEAMAVLFDVAKELNKAKAEEQSGHSRASDLAGILLNLGKVLGILQRSPSEY 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + + + IE L++ R K + +AD R L ILED G T Sbjct: 406 LQGDQQDADEVAEIEALIKARNDARAAKDWPAADAARDGLNVLNIILED------GPSGT 459 Query: 456 RWKQ 459 W++ Sbjct: 460 TWRK 463 >gi|104781222|ref|YP_607720.1| cysteinyl-tRNA synthetase [Pseudomonas entomophila L48] gi|123079208|sp|Q1IBP9|SYC_PSEE4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|95110209|emb|CAK14916.1| cysteinyl-tRNA synthetase [Pseudomonas entomophila L48] Length = 460 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 256/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ +D +N+RMYVCG TVYD+ H+G+ R M+ FD++ R LR Sbjct: 2 LTIYNTLSKTKETFKPLDGNNVRMYVCGMTVYDYCHLGHGRSMVAFDLITRWLRKSGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + ++ +T++ +D RL+ L P +PR Sbjct: 60 ALTYVRNITDIDDKIINRANEN------GESFDALTARMIDAMHEDERRLSILKPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP M +IQ +I G+AY N ++ + YG SR+KI++ ++G R+ Sbjct: 114 ATDHIPGMHAMIQTLIDKGYAYAPGNGDVYYRVGKFAGYGKLSRKKIEDLRIGARIEVGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL FP Sbjct: 174 SKQDPLDFVLWKGAKPGEPFWDSPWGPGRPGWHIECSVMSTCCLGESFDIHGGGSDLEFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + + G KMSKS NF TI ++L+ + Sbjct: 234 HHENEIAQSEAATG-KPYANAWMHCGMIRINGEKMSKSLNNFFTIRDVLD-------KYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TSTSKGIIDPAVLSAL 355 V+R ++ +HYR I+++ L +++ L ++ + A+ Sbjct: 286 PEVVRYLLVASHYRSAINYSEDSLRDSKGALERFYHALRGLPRVAAKGGEAFVERFTVAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHL 401 +D T A L L RE + + L +LG+ E + Sbjct: 346 NDDFGTPEACAVLFDLVREINRLRESDVEAAAGLAGRLRELGDVLGVLQLDADEFLRAGA 405 Query: 402 NKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + A +E L+Q RL K ++ +D IR Q+ + G +LED K T W+ Sbjct: 406 EGKVDAAQVEALIQARLQARADKNWAESDRIRDQITAMGVVLEDGK------GGTTWR 457 >gi|332158896|ref|YP_004424175.1| cysteinyl-tRNA synthetase [Pyrococcus sp. NA2] gi|331034359|gb|AEC52171.1| cysteinyl-tRNA synthetase [Pyrococcus sp. NA2] Length = 476 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 187/495 (37%), Positives = 250/495 (50%), Gaps = 60/495 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL ++ EF+ I +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 1 MSLKVYNTLTKRKEEFKPIREGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII RAR+ + + K + F++D L Sbjct: 61 --TVLMVMNFTDIDDKIIRRARE------TGEDPKELAEKFIKVFLEDMNALKVKPADIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HI +I I+ + G+AYE + + F+ YG S KI+E + G RV Sbjct: 113 PRVTEHIGDIIDFIKKLEEKGYAYEGKDGVYFEVQKFKEYGKLSGIKIEELRKGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK++ P EP W+SPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIF Sbjct: 173 EGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS E W+H GF+ ++G KMSKS GNF+T+ ELL + + Sbjct: 233 PHHENEIAQSEACFGHE-WVRYWLHTGFVMVKGEKMSKSLGNFVTVRELL-------QRY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------- 341 VIR +L HYR P+D++ + L A+ L + T Sbjct: 285 SPEVIRFFVLQKHYRSPLDYSEEGLQHAKNNLERLYNTLENIRIAMERAELAYTWDEDDY 344 Query: 342 ---TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFN 386 + A+ +D NT A++A+ +++ K L F Sbjct: 345 EVYEAIKNARKKFYEAMDDDFNTAEALKAVFEVSNAINKYLTEKERPKEAILRKALEFFK 404 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I GI + KE + I+ LV R L K K+F AD IR++L G LED Sbjct: 405 VVSEIFGIFEDYFKEEKREIEEELIKVLVDVRSQLRKEKRFDLADKIREELRRLGIQLED 464 Query: 445 YKNPDNGQRMTRWKQ 459 + T WK+ Sbjct: 465 R------GQETVWKR 473 >gi|161869111|ref|YP_001598277.1| cysteinyl-tRNA synthetase [Neisseria meningitidis 053442] gi|161594664|gb|ABX72324.1| cysteinyl-tRNA synthetase [Neisseria meningitidis 053442] Length = 699 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 287 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 288 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 341 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 342 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 401 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 402 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 461 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 462 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 521 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 522 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 574 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 575 LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 634 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 635 DPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 690 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 691 --AGGTTWRR 698 >gi|251799666|ref|YP_003014397.1| cysteinyl-tRNA synthetase [Paenibacillus sp. JDR-2] gi|247547292|gb|ACT04311.1| cysteinyl-tRNA synthetase [Paenibacillus sp. JDR-2] Length = 470 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 176/491 (35%), Positives = 251/491 (51%), Gaps = 56/491 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R F +P ++MYVCGPTVYD+ HIGNARP+I FDV+ R L Y Sbjct: 1 MNVQIYNTLTRSKEAFVPQEPGKVKMYVCGPTVYDYIHIGNARPVIFFDVVRRYLEYAGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+ N TD+DDK+I++A Q + + + K F +D L T Sbjct: 61 D--VNYIVNFTDVDDKLIKKAEQ------LGLTVPEVADKFINAFNEDIASLGVHKATLN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HIP +I IQ ++ G+AY + ++ + TS YG S + ++E + G R+ Sbjct: 113 PRVTEHIPSIIAFIQGLVDTGYAYASEGDVYYRTSKFEEYGKLSHQNLEELQFGIRIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK P E WESPWG GRPGWHIECSAM+ YLG DIHGGG DL F Sbjct: 173 ERKENPQDFVLWKGVKPGEINWESPWGPGRPGWHIECSAMAREYLGDTLDIHGGGHDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E+AQS ++ AN W+HNG++++ KMSKS GN IT+NEL++ K Sbjct: 233 PHHECEVAQSEALTG-KQLANYWMHNGYIHINNEKMSKSLGNGITVNELVKRVK------ 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 IR +L THYR P++FT + + +AE + + + + Sbjct: 286 -PAAIRYFILSTHYRSPLNFTDETIAQAENSVDRIANCAANLKHRLSTFDGQSEGAAAGE 344 Query: 345 -----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 + + + +D NT AI A+ +L E+ + + LL Sbjct: 345 LGDRIAQLKAQFEAKMGDDFNTPDAITAVFELVTEANQYMNRADASSEGIAALLAALEQM 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG+ + + I+ L+ ER K ++ AD IR L KG LED Sbjct: 405 NTVLGLLPEAGTDAELLDDEIDALIVERTEARAAKNWARADEIRNLLTEKGIALEDT--- 461 Query: 449 DNGQRMTRWKQ 459 + RW++ Sbjct: 462 ---PQGIRWRR 469 >gi|85715405|ref|ZP_01046387.1| cysteinyl-tRNA synthetase [Nitrobacter sp. Nb-311A] gi|85697826|gb|EAQ35701.1| cysteinyl-tRNA synthetase [Nitrobacter sp. Nb-311A] Length = 477 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 243/483 (50%), Positives = 315/483 (65%), Gaps = 36/483 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL ++ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 1 MELRLYDTLTKQKRVFDPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRNLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKI +RA ++ P + +N+AI +T K QF D L CL PTHQ Sbjct: 61 ADHVTYVRNITDVDDKINDRAARDFPGLSLNEAIRKVTEKTAAQFQADVAALGCLPPTHQ 120 Query: 123 PRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT + M+ I+ +I GHAY+A E++FD S+P+YG+ S R+++EQK Sbjct: 121 PRATEFVLPRADGKTDMVTFIKQLIARGHAYKAGGEVLFDVRSMPDYGALSGRRLEEQKA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G R+ HK+NPADF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG+VFDIHG Sbjct: 181 GARIAVDEHKRNPADFVLWKLSSENEPGWDSPWGRGRPGWHIECSAMSAAYLGEVFDIHG 240 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL T Sbjct: 241 GGLDLIFPHHENEIAQSRCAHGSHAMANYWMHNGFLQVEGEKMSKSLGNFVTINELLTTG 300 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------PQT 340 KFGGR WP V+RL ML THYR+PID+T + L E+E +L + + Sbjct: 301 KFGGRKWPGEVLRLNMLRTHYRQPIDWTTKALEESETILRRICGRIKQFDDARRGMAMKE 360 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCK-- 398 + + + P +L AL +DLNT I + +L + + LL I GI+V Sbjct: 361 RSGQPKLSPEILEALVDDLNTPLMISRVGELNHDDAFDQALLSI--------GIDVFSYA 412 Query: 399 ---EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + +++LV RL K K F +D IR +L + G +L+D K+ D G+ +T Sbjct: 413 RWLRSQEQQAGSNVDELVAARLEARKRKDFKESDRIRDELAAMGVVLKDSKDAD-GKPVT 471 Query: 456 RWK 458 W+ Sbjct: 472 TWE 474 >gi|319649137|ref|ZP_08003345.1| cysteinyl-tRNA synthetase [Bacillus sp. BT1B_CT2] gi|317388837|gb|EFV69656.1| cysteinyl-tRNA synthetase [Bacillus sp. BT1B_CT2] Length = 463 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 169/485 (34%), Positives = 258/485 (53%), Gaps = 57/485 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IVFD + + L Y E V Sbjct: 1 MYNTLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRKYLEYKGYE--V 58 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV N TD+DDK+I+ A + + + + +I + + + +D L C PR T Sbjct: 59 QYVSNFTDVDDKLIKAANE------LGEEVPVIAERFIKAYFEDVGSLGCTKADCHPRVT 112 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++ ++I IQ +I G+AYEA+ ++ + T S YG S + +DE + G R+ K+ Sbjct: 113 ENMDEIIDFIQTLIDKGYAYEADGDVYYKTRSFEGYGKLSHQSVDELRSGARIQVGEKKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 + DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHE Sbjct: 173 DALDFTLWKAAKDNEISWDSPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLAFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + V Sbjct: 233 NEIAQSEALTG-KPFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KEHDPQV 284 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------------------G 345 +R ML HYR PI+++V+ L + + ++ Sbjct: 285 LRFFMLSVHYRHPINYSVELLENTKNAFGRLKTAYSNLQHRLKSSTNLTEGDSEWLEKIE 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILGI 394 A +A+ +D NT +AI L LA+ + + +F+ +LG Sbjct: 345 EQRKAFQTAMDDDFNTANAISVLFDLAKHANYYLQEKNTAEHVIQAFIQLFDEICSVLGF 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + ++ L + IE+L+++R + + F+++D IR QL+S ILED + Sbjct: 405 SLKEQEL---LDKDIEELIEKRNEARRNRDFATSDQIRDQLKSMNIILEDT------PQG 455 Query: 455 TRWKQ 459 TRWK+ Sbjct: 456 TRWKR 460 >gi|197120161|ref|YP_002140588.1| cysteinyl-tRNA synthetase [Geobacter bemidjiensis Bem] gi|226710842|sp|B5EEK6|SYC_GEOBB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|197089521|gb|ACH40792.1| cysteinyl-tRNA synthetase [Geobacter bemidjiensis Bem] Length = 480 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 195/502 (38%), Positives = 260/502 (51%), Gaps = 66/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL EF I+P + MYVCG TVYD HIG+AR +VFD++YR LR Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLRSKGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRN TDIDDKII RA ++ I+ + ++F D RL PT Q Sbjct: 61 E--VTYVRNYTDIDDKIINRANRDGVPYN------EISERFIKEFDNDMARLMLQLPTFQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HIP++I L+Q +I G AY++ +++ + Y S+R +++ + G R+ Sbjct: 113 PKATEHIPEIIALVQTLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ +LG+ DIHGGG DLIF Sbjct: 173 ERKEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+LE S+ Sbjct: 233 PHHENEIAQSEAASG-KPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILE-------SY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------------TSTSKGIIDPA 350 A V+R +L HYR PIDF+ Q L EAE+ L + + +T G + Sbjct: 285 DAEVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALAGIYERLASGANTPAGADNAE 344 Query: 351 VLS-----------ALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAH 390 + A+ +D NT A+ L L R + A Sbjct: 345 FVEKVAGFAGRFGDAMDDDFNTALALGHLFDLVRVINRELPTASTGLLEQAKAEVAKMAA 404 Query: 391 ILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 +LGI + K + + IE L+ ER K K F D IR L K Sbjct: 405 VLGICDSVPAAFLQRMKDRKTSDIEMSAEEIEALIAERAEARKAKNFKRGDEIRDLLLEK 464 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 465 NIVLLDS------AQGTTWKVK 480 >gi|95929121|ref|ZP_01311866.1| cysteinyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] gi|95135022|gb|EAT16676.1| cysteinyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] Length = 481 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 190/501 (37%), Positives = 260/501 (51%), Gaps = 67/501 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL F+ P + MYVCG TVYD+ HIG+AR IVFD++YR L+ Y Sbjct: 1 MSLRVYNTLSGNKELFEPRVPGKVGMYVCGVTVYDYCHIGHARANIVFDIVYRYLK--YS 58 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN TD+DDKII RA + ++ + Q F +D RL PT Q Sbjct: 59 DYDVTYVRNYTDVDDKIINRANER------GITSQQLSEEFIQAFDEDMARLGLDLPTVQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +I L++ +I +G AY ++ ++ F S +Y S+R +DE + G R+ Sbjct: 113 PKATEHIDHIIALVERLIANGKAYASDGDVYFAVESFDSYLKLSKRNLDEMQAGARIAPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP WESPWG+GRPGWHIECSAM YLG+ FDIHGGG DL+F Sbjct: 173 EKKRNPMDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMGMEYLGESFDIHGGGKDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+N+ KMSKS GNF TI ++L+T + Sbjct: 233 PHHENEIAQSEAATG-QPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILKT-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------------STSKG 345 V+R +L HYR PIDF+ Q L EA + LS++ + +T Sbjct: 285 DPEVVRFFILSAHYRSPIDFSDQNLKEARLGLSRFYEGLQAAAEVLAECPPSDVEATDGA 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------------HDLLPIFNASA 389 + A+ +D NT AI L + R + L F Sbjct: 345 ELTAKFREAMDDDFNTAQAIGYLFEGIRTMNRLMATKKFRKKADLVASVRSLYDTFLELG 404 Query: 390 HILG---------IEVCKEHLNKNIS---IAIEKLVQERLILLKMKKFSSADYIRKQLES 437 +LG + + ++ I+ L+ ERL + K F+ +D IR +L Sbjct: 405 KVLGMFGSEPKAWLNQQRLSALADLDITVEEIDALIAERLQARQDKDFARSDAIRDELAE 464 Query: 438 KGFILEDYKNPDNGQRMTRWK 458 KG +L D G T WK Sbjct: 465 KGILLLD------GAGGTDWK 479 >gi|317500158|ref|ZP_07958391.1| cysteine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087615|ref|ZP_08336543.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA] gi|316898447|gb|EFV20485.1| cysteine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330399794|gb|EGG79454.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA] Length = 468 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 183/491 (37%), Positives = 256/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF ++ ++MYVCGPTVY+F HIGNARPMI FD + R Y E Sbjct: 1 MKIYNTLSKRKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIAFDTVRRYFEYKGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEE------GVSADEISKRYIAECKKDMEAMNVKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEICGMVEMISTLIEKGYAYEKNGTVYYRTRKFEGYGKLSHKNLDDLRSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFLN++ +KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNKKMSKSLGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------- 348 + ++R ML HYR P++F+ + + A+ L + + + + Sbjct: 285 YDLQILRFFMLSAHYRSPLNFSAELMEAAKNSLERILTAADNLKFLISNTSEEKMTESEK 344 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A A+ +D NT AI A+ L + D LL Sbjct: 345 RLFEKSSEYVEAFERAMDDDFNTADAIAAIFDLVKYMNTTADGASSKEYLQNLLDRLCLL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE + + IE+++++R K + F+ AD IR +L +KG ILED + Sbjct: 405 TDVLGIIVIKEE--EMLDSEIEEMIEKRQAARKDRNFALADQIRDELLAKGIILEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKK 467 >gi|153814444|ref|ZP_01967112.1| hypothetical protein RUMTOR_00656 [Ruminococcus torques ATCC 27756] gi|145848840|gb|EDK25758.1| hypothetical protein RUMTOR_00656 [Ruminococcus torques ATCC 27756] Length = 469 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 183/491 (37%), Positives = 256/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF ++ ++MYVCGPTVY+F HIGNARPMI FD + R Y E Sbjct: 2 MKIYNTLSKRKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIAFDTVRRYFEYKGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + I+ + + KD + T P Sbjct: 61 -VNFVSNFTDVDDKIIKKAIEE------GVSADEISKRYIAECKKDMEAMNVKPATKNPL 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 114 ATEEICGMVEMISTLIEKGYAYEKNGTVYYRTRKFEGYGKLSHKNLDDLRSGGRSLLVTG 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 174 EDEKEDPLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFLN++ +KMSKS GNF T+ E+ G Sbjct: 234 FPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNKKMSKSLGNFFTVREI-------GEK 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------- 348 + ++R ML HYR P++F+ + + A+ L + + + + Sbjct: 286 YDLQILRFFMLSAHYRSPLNFSAELMEAAKNSLERILTAADNLKFLISNTSEEKMTESEK 345 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A A+ +D NT AI A+ L + D LL Sbjct: 346 RLFEKSSEYVEAFERAMDDDFNTADAIAAIFDLVKYMNTTADGASSKEYLQNLLDRLCLL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE + + IE+++++R K + F+ AD IR +L +KG ILED + Sbjct: 406 TDVLGIIVIKEE--EMLDSEIEEMIEKRQAARKDRNFALADQIRDELLAKGIILEDTR-- 461 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 462 ----EGVKWKK 468 >gi|241667314|ref|ZP_04754892.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875866|ref|ZP_05248576.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841887|gb|EET20301.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 459 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 249/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L K EF+ I+P+ I+MYVCG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGKKEEFKPIEPNKIKMYVCGITVYDDCHIGHARTNIAFDVINRYFKYRGFD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+VRNITDIDDKII+RA + + + + + +L L PT +PRAT Sbjct: 61 TFVRNITDIDDKIIKRANEN------GETTDQLVERTIKSMHDAFDKLNILRPTKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+MI +I+ ++ G AY+ N ++ + + +YG S++ ++ + G+RV K Sbjct: 115 QTIPEMIAMIETLVEKGFAYQGTNGDVFYRVAKFADYGKLSKQNLEALEQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TINE++E + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTINEVIE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 VIR + T YR I+++ + L A + + + + A Sbjct: 287 VIRYFLASTVYRSEINYSKENLDNARASVERLFNALRDIEPVEVNLPDDANEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTVNKYKASGYAFLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IEKL+ ER K K ++ AD IR +L+++G ILED T WK+ Sbjct: 407 DGIDVSEIEKLIAERAQAKKDKNYARADEIRNELQNQGIILEDSAT------GTTWKK 458 >gi|329117979|ref|ZP_08246692.1| cysteine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465867|gb|EGF12139.1| cysteine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 494 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 186/495 (37%), Positives = 263/495 (53%), Gaps = 58/495 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K + +YNTL R+ F IDP+N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 20 KPMLNLYNTLTRQKEAFSPIDPANVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECG 79 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 +TYVRNITDIDDKII RA + + I +T++ +D L L P Sbjct: 80 Y--PLTYVRNITDIDDKIIARAAEN------GETIGELTARFIAAMHEDADALGVLRPDL 131 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT +IPQMI +I+++I G AY A N ++ + P YG S + +D+ + G RV Sbjct: 132 EPKATENIPQMIAMIESLIQKGKAYPAANGDVYYAVREFPAYGQLSGKSLDDLRAGERVE 191 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP WESPWG+GRPGWHIECSAMS + G FDIHGGG DL Sbjct: 192 VDGFKRDPLDFVLWKAAKAGEPAWESPWGQGRPGWHIECSAMSENLFGDTFDIHGGGADL 251 Query: 241 IFPHHENEIAQSCCA------------DRIEKTA---NIWIHNGFLNLEGRKMSKSNGNF 285 FPHHENEIAQS A + A W+HNGF+ ++G KMSKS GNF Sbjct: 252 QFPHHENEIAQSVGASGHTCGHDHTLTHHGKPVASHVKYWLHNGFIRVDGEKMSKSLGNF 311 Query: 286 ITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----- 340 TI ++L + + V+R +L HYR P++++ L +A+ L++ Sbjct: 312 FTIRDVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALARLYTALKNTP 364 Query: 341 ------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL--PIFNASAHIL 392 S + +A+ +D TV A+ L +LA E K D A I+ Sbjct: 365 PAGFALSETANNYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTRDAALSGCLKALGGII 424 Query: 393 GI------EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 G+ E + + + IE L+ R K ++ +D IR L ++ ILED Sbjct: 425 GLLQRDPTEFLQGGTASDGLSNEEIENLIAMRKQARADKNWAESDRIRDLLTAQNIILED 484 Query: 445 YKNPDNGQRMTRWKQ 459 +T W++ Sbjct: 485 S------AGITTWRR 493 >gi|307635173|gb|ADI86121.2| cysteinyl-tRNA synthetase [Geobacter sulfurreducens KN400] Length = 481 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 194/501 (38%), Positives = 264/501 (52%), Gaps = 67/501 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +F ++P ++MYVCG TVYD HIG+AR +VFD++YR LR+ E Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA +E + I+ + +F +D L PT+QP+ Sbjct: 62 -VTYVRNYTDVDDKIINRANKEGVPFNV------ISERFIAEFDRDMAALGLDLPTYQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +MI +I+ ++ G AY A+ ++ F + Y S+R ++E + G R+ Sbjct: 115 ATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A WIHNGF+N+ KMSKS GNF TI E+LE S+ A Sbjct: 235 HENEIAQSEAANG-KPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLE-------SYDA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA--- 350 V+R +L HYR PIDF+ Q L EA L + T G ID Sbjct: 287 EVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGRIDEELAE 346 Query: 351 --------VLSALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNASAHI 391 A+ +D NT A+ + L R + + + Sbjct: 347 KAAGLPTRFREAMDDDFNTAQALGYVFDLVRAVNRVLAEGEIDRAVLASAREAIDRVGAV 406 Query: 392 LG------------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 LG ++ K + IE+L++ER K + F AD IR L ++G Sbjct: 407 LGLFTSEPGAFVERLKSRKAAALPIEAAEIERLIEERNAARKAQDFRRADEIRDTLAAQG 466 Query: 440 FILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 467 ILLLDS------AQGTTWKVK 481 >gi|312621501|ref|YP_004023114.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312201968|gb|ADQ45295.1| cysteinyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 465 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 250/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL EF+ ++ ++MYVCGPTVYDF HIGNARP+IVFD L R Y E Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD++DK+I RA +E ++ + + Q++ KD RL T PR Sbjct: 60 -VIYIQNFTDVEDKMINRANKEGVTVF------ELAERFIQEYYKDADRLNVKRATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI LIQ +I G+AY + ++ F T YG S + I+E G RV Sbjct: 113 ATEEIEDMIALIQTLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK EP W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + A W+HNG++N+ KMSKS GNF T+ E++E + Sbjct: 233 HENEIAQSEASTG-KPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIE-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 +RL ML HYR+P++F++ + +AE L + + Sbjct: 285 EALRLFMLQAHYRKPLNFSIDLIEQAESALKRIYTCYENLEYLIKNGTTSNSSDSTLKAV 344 Query: 346 --IIDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHDLL----PIFNASAHILGI 394 + + A+ +DLNT A L ++ RE + D+L ILGI Sbjct: 345 LKELKAKFIDAMEDDLNTAEATGYLFEMVREINTHSNTCSKDVLILARDTLKELCSILGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E I I +LV++R K K F AD IR L S G+I+ D +R+ Sbjct: 405 LEQYEEKKDEIPPEILELVEKRNEARKAKNFLEADRIRDDLRSLGYIVLDTPQGTKIERI 464 >gi|194017569|ref|ZP_03056180.1| cysteinyl-tRNA synthetase [Bacillus pumilus ATCC 7061] gi|194010841|gb|EDW20412.1| cysteinyl-tRNA synthetase [Bacillus pumilus ATCC 7061] Length = 466 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 169/489 (34%), Positives = 256/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL RK EF ++P ++MYVCGPTVY++ HIGNARP IV+D + + L Y Sbjct: 1 MTINIYNTLTRKKEEFVPLEPGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRKYLEYSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I+ A + + + + I + Q + +D + L C Sbjct: 61 D--VNFVSNFTDVDDKLIKAANE------LGEDVPTIADRFIQAYFEDVSALGCKKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I I +I G+AYEA+ ++ + T S YG S + IDE K G R+ Sbjct: 113 PRVTENMDDIIAFIATLIEKGYAYEADGDVYYSTRSFEGYGKLSHQSIDELKTGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKRDALDFALWKAAKDQEISWDSPWGEGRPGWHIECSAMVKKYLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+E KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KPFAKYWMHNGYINIENEKMSKSLGNFVLVHDIV-------KEQ 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI++++ L + ++ + + Sbjct: 285 DPDVLRFFMLSVHYRHPINYSMDLLESTKSAFNRLKTSYANLHHRLESSTNITEDNAEWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAH 390 +S + +D NT +AI L +LA+++ + + +F Sbjct: 345 AKVEEQRATFISEMNDDFNTANAISVLFELAKQANYYMENDHTSEEVIKAFIGLFQEITS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++H + +E L+++R + + F+ +D IR QL+S +LED Sbjct: 405 VLGFSLEEKHT---LDEEVEALIEKRNEARRNRDFALSDQIRDQLKSMNIVLEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -PQGTRWKR 464 >gi|238022971|ref|ZP_04603397.1| hypothetical protein GCWU000324_02893 [Kingella oralis ATCC 51147] gi|237865779|gb|EEP66917.1| hypothetical protein GCWU000324_02893 [Kingella oralis ATCC 51147] Length = 474 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 181/494 (36%), Positives = 265/494 (53%), Gaps = 57/494 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F ++P N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 2 PNLTVYNTLTRQKEPFIPLNPQNVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQHGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 +TYVRNITDIDDKII RA + + I +T++ +D+ L P + Sbjct: 62 --PLTYVRNITDIDDKIIARANEN------GETIQQLTARFIAAMNEDSDALGVQRPDVE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+AT HI QMI +I+ +I +G AY AN ++ + P YG S + +D+ + G RV Sbjct: 114 PKATEHIAQMIAMIEQLIANGKAYSAANGDVYYAVREFPAYGQLSGKSLDDLRAGERVEV 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAM G FDIHGGG DL Sbjct: 174 DGFKRDPLDFVLWKAAKPEEPHWQSPWGNGRPGWHIECSAMGGELFGDTFDIHGGGADLQ 233 Query: 242 FPHHENEIAQSCCADRI--------------EKTANIWIHNGFLNLEGRKMSKSNGNFIT 287 FPHHENEIAQSC A + W+HNGF+ ++ KMSKS GNF T Sbjct: 234 FPHHENEIAQSCGAHHGISGEHAPRAAHKTIDSHVKYWLHNGFIRVDNEKMSKSLGNFFT 293 Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---- 343 I ++L + + A V+R +L HYR P++++ L +A+ L+ + Sbjct: 294 IRDVL-------KKYDAEVVRFFILRAHYRSPLNYSDAHLDDAKHSLTSLYNALGNVAPA 346 Query: 344 -------KGIIDPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI 394 +A+ +D +TV A+ L +LA+E K + +L A A +LG+ Sbjct: 347 PFTLSEHANDYTRRFYAAMDDDFDTVKAVAVLFELAKEVNKTQSAELSGCLKALAGVLGL 406 Query: 395 EVCKEH--------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + H N + AIE L+ +R + K ++ +D IR +L ++G +L D Sbjct: 407 LQREPHEFLQSGAPDNGLSADAIEALIAQRNLARANKNWAESDRIRDELAAQGVVLRD-- 464 Query: 447 NPDNGQRMTRWKQK 460 T W ++ Sbjct: 465 ----AGGETTWTRE 474 >gi|254448716|ref|ZP_05062174.1| cysteinyl-tRNA synthetase [gamma proteobacterium HTCC5015] gi|198261724|gb|EDY86011.1| cysteinyl-tRNA synthetase [gamma proteobacterium HTCC5015] Length = 463 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 186/484 (38%), Positives = 256/484 (52%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ I P +R+YVCG T YD+ HIG+AR M+ FD + R LR+ + Sbjct: 1 MQIYNTLSRSKQVFEPIHPGQVRLYVCGITTYDYCHIGHARVMVAFDAITRYLRHRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKI++RA + +A +T++ +D L L P +PR Sbjct: 60 -VTYVRNITDIDDKILKRAEEN------GEAYDTLTARFIDAMHEDERALGVLPPDREPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I LIQ +I G AY A N ++ F S +YG S +K+++ G RV + Sbjct: 113 ATQHIQDIIDLIQVLIDKGAAYTAENGDVYFSVSDFADYGKLSNKKLEDLLEGVRVELES 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + + GWE+PWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 173 SKRDPRDFALWKGAQQDQVGWEAPWGYGRPGWHIECSAMSTSCLGNHFDIHGGGPDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E AN+W+H G + ++ KMSKS GNF TI E+LE + Sbjct: 233 HHENEIAQSEAATG-ETYANVWMHAGAVRVDNEKMSKSLGNFFTIREVLE-------KYQ 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------------QTSTSKGIIDPAV 351 VIR +L +HYR PI+++ L +A L + + + S A Sbjct: 285 PEVIRYFLLSSHYRSPINYSDNSLEQARAGLERLYTALRPYSDVAADEAALSDSSALQAF 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNASAHILGIEVCKEH------ 400 + +D NT A+ L LAR+ + ++ +LG+ Sbjct: 345 QQVMDDDFNTREALSVLFDLARQLNQQEGEAARNIAVQLKTLGRVLGLLEGDAQAYLKSG 404 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 I+ L+ ER+ + K F+ AD IR QL G LED G T Sbjct: 405 GLVSDAGSLSDDDIDALIAERIEAKQNKDFARADDIRDQLTEAGIQLED------GPAGT 458 Query: 456 RWKQ 459 +W++ Sbjct: 459 QWRR 462 >gi|311695080|gb|ADP97953.1| cysteinyl-tRNA synthetase [marine bacterium HP15] Length = 462 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 185/482 (38%), Positives = 261/482 (54%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL ++ EF+ I+P +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR+ + Sbjct: 2 IRIYNTLTQQKEEFRPIEPGKVRMYVCGMTVYDYCHLGHARVLVAFDVITRYLRHRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ RA + + +T + + +D RL L+P +PR Sbjct: 61 -VNYVRNITDIDDKILRRADEN------GEPYDELTDRMIKAMHEDEARLGVLSPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I +I +I GHAY A+ ++ F S +YG S++K+++ G RV + Sbjct: 114 ATAYIDEIIAMIHKLIAGGHAYAADNGDVYFAVDSFDDYGKLSKKKLEDLLAGARVDVQE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF LWK + E W SPWG GRPGWHIECSAMS+ LG+ FDIHGGG DL+FP Sbjct: 174 AKRSPADFALWKAAKAGEVSWPSPWGDGRPGWHIECSAMSTCCLGETFDIHGGGPDLLFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H G + + KMSKS GNF TI E++E +P Sbjct: 234 HHENEIAQSECATG-HTFVNTWMHAGAIRVNKEKMSKSLGNFFTIREIME-------KYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPAVLS 353 A V+R ++ +HYR +D++ + L EA L++ + D Sbjct: 286 AEVVRYFLVSSHYRSQVDYSEENLAEAGRTLTRLYHALRGIVPAKAADVPESEHDERFAE 345 Query: 354 ALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKEHL--- 401 A+ +D NT AI LH +A E I +LG+ Sbjct: 346 AMDDDFNTAGAIAVLHAVANEINQHRRDGREDDAKQSAAILVRLGGVLGLLQQDPEAFFQ 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + IE ++Q R K K F+ AD IR +L KG IL+D + T W Sbjct: 406 ADTGGELSAEDIEAMIQARADARKAKNFAEADRIRDELLEKGIILDDSR------EGTTW 459 Query: 458 KQ 459 ++ Sbjct: 460 RK 461 >gi|30248074|ref|NP_840144.1| cysteinyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718] gi|61216300|sp|Q82Y45|SYC_NITEU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|30179959|emb|CAD83954.1| Cysteinyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718] Length = 465 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 183/486 (37%), Positives = 267/486 (54%), Gaps = 52/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+TL R EF + P +RMYVCG TVYD+ H+G+AR ++VFD + R L+ + Sbjct: 2 LKIYDTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQTLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII RA + H + S +T++ Q +D L ++P+ +PR Sbjct: 61 -VIYVRNITDVDDKIIRRALENH------EPFSALTARYIQAMEEDAMALGVISPSFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ MI +I++++ AY A N ++ +D P YG S + +D+ + G RV Sbjct: 114 ATEYVDSMIAMIESLLNRELAYVASNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAMS HYLG FDIHGGG DL FP Sbjct: 174 NKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSEHYLGDQFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS N W+HNGF+ ++ KMSKS GNF T+ E+L + Sbjct: 234 HHENEIAQSEGVHG-HSHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLTR-------YQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPA--- 350 V+R ++ HYR P++++ L +A L + + + +ID Sbjct: 286 PEVVRFFIVRAHYRSPLNYSDAHLNDARSALERLYTVLKNHAPSQDSEVATAVIDWENNV 345 Query: 351 ----VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKE----- 399 +SA+ +D NT A+ L LA E+ + D + A +LG+ Sbjct: 346 YARRFMSAMNDDFNTPEAVAVLFDLASEANRTGDSHYASLLKALGGVLGLLQQPPQQYLQ 405 Query: 400 -----HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + IE ++Q+RL K + F+ AD +R+QL G ILED + Sbjct: 406 YPAHLQDGQYSVEEIENMIQQRLQARKERNFAQADTLRQQLAEAGIILEDS------PQG 459 Query: 455 TRWKQK 460 T W+++ Sbjct: 460 TTWRRE 465 >gi|296131811|ref|YP_003639058.1| cysteinyl-tRNA synthetase [Thermincola sp. JR] gi|296030389|gb|ADG81157.1| cysteinyl-tRNA synthetase [Thermincola potens JR] Length = 487 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 181/508 (35%), Positives = 252/508 (49%), Gaps = 71/508 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IK+YNT RK EF P + MYVCGPT Y+ H+GNARP+IVFD + R Y Sbjct: 1 MTIKLYNTCTRKKEEFIPRQPGKVDMYVCGPTTYNLIHLGNARPLIVFDTVRRYFEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TDIDDKII RAR+E N + +K +++ KD L T Sbjct: 61 Q--VTYVQNFTDIDDKIINRAREE------NTDPITLAAKYIREYFKDAAALGVREATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + H+ ++I +I+ I+ +G+AY+ + ++ F S YG S R +++ + G RV Sbjct: 113 PRVSEHLDEIIEMIRGIMKNGYAYQLDGDVYFSVESFKGYGKLSGRSLEDMQAGARVDVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM++ YLG FDIHGGG DLIF Sbjct: 173 TRKRHPMDFALWKAAKPGEPAWDSPWGKGRPGWHIECSAMANKYLGMGFDIHGGGFDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ A W+HNGF+ + KMSKS GNF T+ E+L + Sbjct: 233 PHHENEIAQAEAYAGCGPFARYWMHNGFITVNEEKMSKSLGNFFTVREILA-------KY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------------- 342 V+R ML THYR P+DF +L LS+ Sbjct: 286 DPEVVRFYMLSTHYRSPLDFDDTKLEMNRKSLSRLHNALDNIESILKTNKFGEVENPELE 345 Query: 343 --------SKGIIDPAVLSALYNDLNTVSAIQALHKLAREST------------------ 376 ++ A+ +D NT AI L LAR+S Sbjct: 346 KALADLLRAREKAVRDFEEAMDDDFNTALAIAVLFDLARDSNAFIHAATSAGGDALLQEV 405 Query: 377 --KNHDLLPIFNASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIR 432 + F +LG+ + + + ++ ++ R K +++AD IR Sbjct: 406 KGALQQVFDTFMKLGQVLGLFEKRGTQGDTGLVDRLMQIILDIRSEARARKDWATADGIR 465 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQK 460 +L G I+ED + RWK+K Sbjct: 466 NKLNELGIIIEDS------PQGARWKRK 487 >gi|304413758|ref|ZP_07395202.1| Cysteinyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] gi|304283849|gb|EFL92243.1| Cysteinyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] Length = 506 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 184/486 (37%), Positives = 259/486 (53%), Gaps = 52/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ ID I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 43 LKIFNTLSRQKEIFRPIDAGKIGMYVCGITVYDLCHIGHGRTFVAFDVIVRYLRYL--DY 100 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA + N+ +T + + +D L L P +P+ Sbjct: 101 DLTYVRNITDIDDKIIKRAAEN------NETCQQLTERMMIEMYRDFDALNILRPNEEPQ 154 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I LI+ +I HAY A+ +++F S PNYG SR+ ++ + G RV Sbjct: 155 ATAHITEIIALIKKLIEGKHAYIAADGDVVFAVKSAPNYGLLSRQNLENLQAGARVAIAD 214 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWKR+ P +P W+SPWG GRPGWHIECSAM++ LG+ FDIHGGG DL+FP Sbjct: 215 GKEDPMDFVLWKRALPGDPSWDSPWGAGRPGWHIECSAMNAKQLGRHFDIHGGGSDLLFP 274 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H G + +E KMSKS NF TI +LL+ + Sbjct: 275 HHENEIAQSTCAHG-DPYVNYWMHTGMVMVEKNKMSKSLNNFFTIRDLLD-------HYD 326 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVLS 353 A +R ++ HYR +D++ + L ++ I L + + + + Sbjct: 327 AETVRYFLMSAHYRSQLDYSEENLRQSRIALERLYIALRGTDETASAAAAGENFEKRFRD 386 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK------- 398 A+ +D NT A L +ARE + L + A +LG+ K Sbjct: 387 AMDDDFNTPEACAVLFDIAREVNRLKTEDNAAASGLAATLRSMAQVLGLLTQKPEHFLQA 446 Query: 399 ----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E IE L+++R + K + AD R QL LED G + Sbjct: 447 VNHSEIAKDTEIAKIEALIEQRNTARQQKNWVLADEARHQLNEMKITLED------GPQG 500 Query: 455 TRWKQK 460 T W++K Sbjct: 501 TTWRRK 506 >gi|75675421|ref|YP_317842.1| cysteinyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] gi|109894914|sp|Q3STA1|SYC_NITWN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|74420291|gb|ABA04490.1| cysteinyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] Length = 477 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 245/478 (51%), Positives = 314/478 (65%), Gaps = 26/478 (5%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++Y+TL R+ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MDLRLYDTLTRRKRAFTPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI +RA ++ P +P+N+AI +T K QF D L CL PTHQ Sbjct: 61 DDHVTYARNITDVDDKINDRAARDFPDLPLNEAIRKVTEKTAAQFQADVAALGCLPPTHQ 120 Query: 123 PRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT + M+ I+ +I GHAYEA E++FD S+P+YG+ S R++DEQK Sbjct: 121 PRATEFVLPRTDGKTDMVTFIKQLIARGHAYEAGGEVLFDVRSMPDYGALSGRRLDEQKA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G RV HK+NPADF+LWK S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHG Sbjct: 181 GARVAVDAHKRNPADFVLWKLSSENEPGWDSPWGRGRPGWHIECSAMSTAYLGDVFDIHG 240 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL T+ Sbjct: 241 GGLDLIFPHHENEIAQSRCAHGTHAMANYWMHNGFLQVEGEKMSKSLGNFVTINELLTTE 300 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------- 346 KFGGR WP V+RL ML THYR+PID+T++ L E+E +L + Sbjct: 301 KFGGRKWPGEVLRLNMLRTHYRQPIDWTIKALEESETILRRVCGRIKQFEYARRGMPTKE 360 Query: 347 ------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEH 400 + P +L AL +DLNT + + +L+ + +H LL I +L Sbjct: 361 RSVQLNLPPEILEALVDDLNTPLMLSRIGELSYDDAFDHALLSI---GIDVLSYARWLRS 417 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + S +++LV RL K F +D IR +L + G +L+D K+ D G+ +T W+ Sbjct: 418 QEQYASSNVDELVVARLEARMRKDFKESDRIRDELAAMGVVLKDGKDAD-GKPVTTWE 474 >gi|115524011|ref|YP_780922.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] gi|122296629|sp|Q07Q42|SYC_RHOP5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115517958|gb|ABJ05942.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] Length = 463 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 230/468 (49%), Positives = 304/468 (64%), Gaps = 20/468 (4%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL R+ F +DPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTLSREKRTFTPLDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKI +RA ++ P +P+N+AI +T + +QF D L CL PT + Sbjct: 61 EAHVKYVRNITDVDDKINDRAARDFPGLPLNEAIRKVTEQTEKQFHDDVDALGCLRPTVE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKM 175 PRAT HI +M +I +I G AY A + ++F ++ P YG+ + R +DE Sbjct: 121 PRATEHIGEMRDIIDRLIAGGFAYVAADHVLFSPQAMNAKDGVLPRYGALANRSLDEMIA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFD 232 G RV +K++ DF+LWK S P EP W SP G +GRPGWHIECSAMS +LG+ FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPGGIAVQGRPGWHIECSAMSWKHLGERFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG+DL+FPHHENE+AQSCCA E+ A W+HNGFL +EG KMSKS GNF+TI ELL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTERMAETWMHNGFLQVEGEKMSKSLGNFVTIRELL 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAV 351 T KFGG+ W V+RLAML THYR PID+TV+ L EAE + W + T + V Sbjct: 301 ATDKFGGKRWDGAVLRLAMLKTHYRSPIDWTVEALHEAEKAIYDWSEFTKDATPAPCDEV 360 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI-EVCKEHLNKNISIAIE 410 + AL +DLNT I LH L R K +LL +LGI V ++ + I + + Sbjct: 361 IDALADDLNTPKMIAELHGL-RRVGKPAELLGAL----QLLGIGRVFRQTIE--IDVNAQ 413 Query: 411 KLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 L++ R K F +D IR +L + G +L+D K+ D G+ +T W+ Sbjct: 414 ALIEARTAARARKDFKESDRIRDELAAMGVVLKDGKDAD-GKPVTTWE 460 >gi|160933144|ref|ZP_02080533.1| hypothetical protein CLOLEP_01987 [Clostridium leptum DSM 753] gi|156868218|gb|EDO61590.1| hypothetical protein CLOLEP_01987 [Clostridium leptum DSM 753] Length = 470 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 183/488 (37%), Positives = 263/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I P ++Y CGPTVY+F HIGNARPM VFD+L R L Y + Sbjct: 1 MKIFNTLTRQKEEFVPIAPGEAKIYACGPTVYNFIHIGNARPMCVFDILRRYLEYRGMK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII +A +E + + Q++ D L T PR Sbjct: 60 -VTFVQNFTDIDDKIIRKANEEKT------DYLTVAERYIQEYKTDARGLNIREATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + Q+I +I +++ G+AY A N ++ F T YG S + ++E + G R+ Sbjct: 113 ATETMEQIIEIISDLVKKGYAYPAENGDVYFRTLKFSGYGKLSHQPLEELEAGARIGVGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM+ YLG DIH GG DLIFP Sbjct: 173 SKEDPMDFALWKAAKPGEPYWDSPWGKGRPGWHIECSAMARTYLGDTIDIHCGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS C + + A+ W+HNG++N++ RKMSKS NF T+ E+ + + Sbjct: 233 HHENEIAQSECCNGV-PFAHYWMHNGYINVDNRKMSKSLNNFFTVREV-------AKEFG 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---------------- 347 IR M+ +HYR PI+++V L + L + + + Sbjct: 285 YEPIRYLMVASHYRSPINYSVDLLKQCTAALERLYTCRENLEFVVSNAKPGREARDEEIK 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNASA 389 A+ +DLNT AI L +LA++ N + L +FN+ A Sbjct: 345 KRLEEYQNRFCEAMDDDLNTADAIAVLFELAKDINTNLSTATNPHKEIAEEALTLFNSLA 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG+ K+ ++ IE L+Q R+ K K ++ AD IR +L ++ +LED Sbjct: 405 DVLGLLYVKKDTKDSLDEEIENLIQRRVEARKNKNWAEADRIRDELSARHVVLEDT---- 460 Query: 450 NGQRMTRW 457 + T+W Sbjct: 461 --PQGTKW 466 >gi|319654847|ref|ZP_08008922.1| cysteinyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] gi|317393410|gb|EFV74173.1| cysteinyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] Length = 467 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 168/487 (34%), Positives = 248/487 (50%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ +F I+ ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IQIYNTLTRQKEDFIPIEEGKVKMYVCGPTVYNYIHIGNARPPIVFDTVRRYLEFRGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A + + + I + + +D + L C PR Sbjct: 62 -VQYVSNFTDVDDKLIRVANE------LGTDVPSIAERFINAYFEDVSALGCRKADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T I +I IQ +I G AYE+ ++ + T YG S + IDE ++G R+ Sbjct: 115 VTESIDIIIEFIQTLIDKGFAYESEGDVYYHTRKFDEYGKLSHQSIDELRVGARIAVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDSLDFVLWKAAKEGEIAWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYINIDNEKMSKSLGNFVLVHDII-------QKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------QTSTS 343 V+R ML HYR PI+++ + L L + + Sbjct: 287 QVLRFFMLSVHYRHPINYSDELLENTRTGLERIKTSYHNLQHRKEASVNLTDNNQEWLDK 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPI----FNASAHIL 392 + + + +D NT +A+ L +L++ E +++ F +L Sbjct: 347 ITSLHEQFIQDMDDDFNTANAVSILFELSKLANYYLMEKNTAVEVIDAFTKEFETLFDVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ +E + IE+L+++R K + F AD IR QL+ ILED Sbjct: 407 GLS-LEETNADLLDEEIEQLIEQRQQARKERNFELADKIRDQLKEMNIILEDT------P 459 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 460 QGIRWKR 466 >gi|332532274|ref|ZP_08408155.1| cysteinyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505] gi|332038372|gb|EGI74817.1| cysteinyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 459 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 172/477 (36%), Positives = 261/477 (54%), Gaps = 46/477 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ +F+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ + + Sbjct: 4 IYNTLTRQKEQFKPMVEGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYD--L 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII+RA + ++I+ +T + T+ +D L L P +P T Sbjct: 62 KYVRNITDIDDKIIKRANEN------GESINDLTVRMTKAMHEDFDSLNMLRPDIEPTVT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +H+ ++I +++ +I GHAY A + +++FD S+ YG+ S++ + + G+RV K Sbjct: 116 SHMDEIIAMVKRLIEKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQDK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +P DF+LWK++ EP W SPWG GRPGWHIECS MSS +LG+ FDIHGGG DL FPHH Sbjct: 176 DDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSVMSSKHLGEHFDIHGGGSDLQFPHH 235 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQSCCA+ + N WIH G + + KMSKS NF T+ E+L +++ A Sbjct: 236 ENEIAQSCCANNGK-YVNTWIHTGMVQVNKEKMSKSLDNFFTVREVL-------KAYDAE 287 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLSALY 356 +R ++ HYR ++++ + L +A L + ++ A+ Sbjct: 288 SVRYFLISGHYRSQLNYSQENLDQARSSLERIYTALRDVVPVECDLEGNEFVAKFRKAMN 347 Query: 357 NDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI------EVCKEHLN 402 +D NT A+ L +LA+E + + L I + +LG+ + + Sbjct: 348 DDFNTPEALPVLFELAKELNRVKESDAGQAGKLAFILRSLGEVLGVAQQAPEAFLQGGQD 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+ +R K +++AD R L + G ILED T W++ Sbjct: 408 DDEVATIEALIVKRNEARASKDWAAADEARDALNALGVILEDS------AGKTTWRK 458 >gi|254369813|ref|ZP_04985823.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] gi|157122772|gb|EDO66901.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] Length = 464 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 252/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANEN------GESTTELVERNIRAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + + A Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDNASEYEEKFIKA 351 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 352 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 411 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 412 DGADASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 463 >gi|269792622|ref|YP_003317526.1| cysteinyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100257|gb|ACZ19244.1| cysteinyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 468 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 185/486 (38%), Positives = 261/486 (53%), Gaps = 58/486 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN L + F ++ +R YVCGPTVYD+ HIGNARP IVFDV+ R L + + V Sbjct: 5 VYNDLTNRKEPFVPLEEGKVRFYVCGPTVYDYFHIGNARPFIVFDVMRRYLEHLGYQ--V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV+N TDIDDK+I+RA++ + + + + + + +D L T P+AT Sbjct: 63 TYVQNFTDIDDKMIKRAQE------MGITVKELADRFIEAYYQDADALGIRRATVNPKAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 IP +I LI+ +I GHAY+ + ++ FD S P YG ++ ++E + G RV K+ Sbjct: 117 EEIPHIIELIELLIQKGHAYQIDGDVYFDVMSYPPYGKLIKQDLEELQSGARVEVDPRKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF LWK P EP W+SPWG GRPGWHIECSAM H+LG D HGGG DL+FPHHE Sbjct: 177 HPLDFALWKAQKPGEPAWDSPWGPGRPGWHIECSAMCRHHLGDTIDFHGGGCDLVFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS A + W+HNG+L ++ KMSKS GNF+T +L+ + +P V Sbjct: 237 NEIAQSEAATG-KPFVRYWVHNGYLMIDKEKMSKSLGNFMTARDLM-------KRFPPLV 288 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIIDPA------------ 350 IRL ML HYR PI+F+ + L +A+ L + W Q + P+ Sbjct: 289 IRLFMLSAHYRSPINFSEENLRQAQAALERLRNGWAQIRFALDNPPPSTSESRELREQIA 348 Query: 351 -----VLSALYNDLNTVSAIQALHKLARESTK------NHDLLPI------FNASAHILG 393 A+ +DLNT A+ A+ L R + + DL + I+G Sbjct: 349 RYRDDFHRAMDDDLNTAEALGAVFSLIRATNSHLSRGDSPDLAALEEASNFLRDVDRIMG 408 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + E + +E L++ER K + F+ AD IR +L S G +LED + Sbjct: 409 VIGIDE---DQLDRDVEALIEERNAARKARDFAKADAIRDRLSSMGIVLEDT------PQ 459 Query: 454 MTRWKQ 459 TRWK+ Sbjct: 460 GTRWKR 465 >gi|118442910|ref|YP_877177.1| cysteinyl-tRNA synthetase [Clostridium novyi NT] gi|187629804|sp|A0PXS5|SYC_CLONN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118133366|gb|ABK60410.1| cysteinyl-tRNA synthetase [Clostridium novyi NT] Length = 466 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 169/489 (34%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y + Sbjct: 1 MKLFNTMTRQKEEFKPIKDGEVSMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E N + + + ++ KD L T PR Sbjct: 60 -VNFIQNFTDIDDKMIKKANEE------NITVKELGDRFIHEYYKDADGLNIKRATANPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ ++I ++++I G+AYE N ++ F T YG S + +D+ + G R+ Sbjct: 113 ATEYMDEIIQFVKDLIDKGYAYEVNGDVYFSTKQFKEYGKLSGQNLDDLQAGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W PWG+GRPGWHIECS M+ LG DIH GG DL+FPH Sbjct: 173 KKDPMDFAIWKSEKPGEPSWNCPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+H+ +LN+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARNG-KTFANYWMHSAYLNINNKKMSKSLNNFFTTREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIRL ML HYR P++F+ L A+ + + + V Sbjct: 285 EVIRLFMLSAHYRTPLNFSDDLLQSAKASNERLYNAIGNLERLLDEVKVDKVTENEKEYV 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L ++ N + L + Sbjct: 345 KNLESYKEKYIEKMDDDFNTADAISVIFDLVKDINTNINTESSKELVEYSLELIRELGKP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI L+ ++ IEKL+++R K K ++ AD IR L+++G +LED Sbjct: 405 LGILQKSTMLD--LNAEIEKLIEQRQQARKDKDWALADKIRDDLKARGIVLEDT------ 456 Query: 452 QRMTRWKQK 460 + RWK++ Sbjct: 457 PQGVRWKRE 465 >gi|92114173|ref|YP_574101.1| cysteinyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] gi|123084029|sp|Q1QVV6|SYC_CHRSD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91797263|gb|ABE59402.1| cysteinyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] Length = 461 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 257/478 (53%), Gaps = 47/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ F +D +RMYVCG TVYD+ HIG+AR M+ FD++ R LR+ E Sbjct: 1 MQIYNTLTRRKETFTPLDAGRVRMYVCGITVYDYCHIGHARVMVAFDMITRYLRWRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI++RA + ++ I+ +T + +D RL L P +PR Sbjct: 60 -VDYVRNITDIDDKILKRAEEN------DEPIAALTERMIAAMHEDEGRLGVLRPDREPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ ++ ++Q +I G+AY A N ++ + YG S R +D+ + G+RV + Sbjct: 113 ATAHVDDIVAMVQRLIDKGYAYPAANGDVYYRVRRFEGYGKLSNRDLDDMRAGSRVEVET 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P E W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 173 AKEDPLDFVLWKAAKPGEASWPSPWGDGRPGWHIECSAMSTCCLGDTFDIHGGGPDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+H G + ++ KMSKS GNF TI E+LE Sbjct: 233 HHENEIAQSEAATG-RPYVNTWMHAGAVRVDQEKMSKSLGNFFTIREVLEAH-------A 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------DPAVLSAL 355 V+R +L +HYR PI++ L++A L ++ + ++A+ Sbjct: 285 PEVVRYLLLASHYRSPINYAPDALSDARRSLERFYNALQGVAPVAGEVAAGYRERFIAAM 344 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI--EVCKEHLNKNI 405 +D NT A+ L LARE + L +LG+ + + L Sbjct: 345 DDDFNTAEALAVLFDLARELNRAKQEAPAHAPALAHELKELGGVLGLFGQDPEGFLQAGA 404 Query: 406 ------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 IE ++ R K K F++AD IR +L + G +L+D ++ T W Sbjct: 405 GRLPMSEEDIEARIEARAQAKKAKDFATADGIRDELAALGIVLKDGRD------GTTW 456 >gi|154485049|ref|ZP_02027497.1| hypothetical protein EUBVEN_02770 [Eubacterium ventriosum ATCC 27560] gi|149734002|gb|EDM50121.1| hypothetical protein EUBVEN_02770 [Eubacterium ventriosum ATCC 27560] Length = 470 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 182/491 (37%), Positives = 260/491 (52%), Gaps = 58/491 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K EF ++ ++MYVCGPTVY+ HIGNARPMI+FD R L Y + Sbjct: 1 MKIYNTLTKKKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIIFDTFRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E I+ + ++ KD L T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GTTAEEISQRYIKECKKDMHDLNIEPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I+ +I G+AY+A+ + + T +YG S++ ID+ + G R V Sbjct: 113 ATQEIDGMIEMIKTLIDKGYAYDADGTVYYRTRKFKDYGKLSKKNIDDLEAGHRDIKVAG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG DIH GG DLI Sbjct: 173 EESKEDPLDFVLWKPKKEGEPSWPSPWSDGRPGWHIECSVMSKKYLGDEIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E + W+HNGFLN+ +KMSKS GNF T+ ++ E Sbjct: 233 FPHHENEIAQSEAANGCE-FSKYWMHNGFLNINNKKMSKSLGNFFTVRDISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQTSTSK 344 + V+R ML HYR P++F+ + A+ L + T Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSDDLMESAKNGLERIITSGAKIRDIISNGKDGKVTDAEA 344 Query: 345 GIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 ++D A A+ +D NT +AI A+ +L + + N + + I + Sbjct: 345 KLLDEAKEYITKFEEAMDDDCNTANAISAVFELVKFANSNLNEGSTKEFAAGVYEILDKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 ++LGI + KE IE+++ +R K + F+ AD IR +L +KG +L+D + Sbjct: 405 CNVLGIILEKEEEKVGDEDYIEEMIAKRAQAKKDRDFAMADQIRDELAAKGIVLKDTR-- 462 Query: 449 DNGQRMTRWKQ 459 T+W + Sbjct: 463 ----EGTKWSR 469 >gi|225024891|ref|ZP_03714083.1| hypothetical protein EIKCOROL_01779 [Eikenella corrodens ATCC 23834] gi|224942349|gb|EEG23558.1| hypothetical protein EIKCOROL_01779 [Eikenella corrodens ATCC 23834] Length = 473 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 183/485 (37%), Positives = 258/485 (53%), Gaps = 52/485 (10%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDVEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIEALIRNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSDKLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRI---------------EKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI + Sbjct: 236 ENEIAQSVGASGHVCGHEHAHTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRD 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + ++R +L HYR P++++ L +A+ L++ T + ++ Sbjct: 296 VL-------KQYDPEIVRFFILRAHYRSPLNYSDAHLDDAKNALTRLYNTLANVPPVEFQ 348 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI--- 394 +A+ +D +TV A+ L +LA E+ K + +L A A +G+ Sbjct: 349 VASEANDYTRRFFAAMNDDFDTVQAVAVLFELAGEANKTQSAELSGCLKALAGTIGLLQR 408 Query: 395 ---EVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + N + IE L+ R K ++ +D IR L +G L D + Sbjct: 409 NPTEFLQGGATANGLSNEEIEALIARRKQARADKNWAESDRIRDLLAEQGITLRDGADGT 468 Query: 450 NGQRM 454 + R Sbjct: 469 SWTRG 473 >gi|253579512|ref|ZP_04856781.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849013|gb|EES76974.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 469 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 179/492 (36%), Positives = 252/492 (51%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF ++ +RMYVCGPTVY+ HIGNARPMI+FD + R + Y E Sbjct: 1 MKLFNTLTRRKEEFVPLEEGKVRMYVCGPTVYNLIHIGNARPMIIFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + + KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVSAQEISERYIAECKKDMDGMNVKPATTNPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ ++ G+AY A + + F YG S + +D+ + G R V Sbjct: 113 ATQEINGMISMIQTLVDKGYAYPAADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLQVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W SPW GRPGWHIECS M+ YLG DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPSWPSPWCDGRPGWHIECSVMAKKYLGDEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS C + + A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECCN-DKIFAKYWMHNAFLNIDNRKMSKSLGNFRTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------- 350 + V+R ML HYR P++F+ + A+ L + + + A Sbjct: 285 QYDLQVLRFFMLNAHYRSPLNFSADLMEAAKNALERITDAAANLKDRKAAAQTETATDAE 344 Query: 351 -------------VLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 A+ +D NT A+ A+ +L + + N LL Sbjct: 345 KELLAQAQEFVKKFEEAMDDDFNTADALAAIFELVKFANTNVSEASSAEFAGTLLDTMVK 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG++ K + + IE L+ ER K K F+ AD IR +L +KG IL+D + Sbjct: 405 LCDVLGLKAVK--TEEILDKEIEDLIAERQEARKAKNFARADEIRDELLAKGIILKDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|194324147|ref|ZP_03057921.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] gi|194321594|gb|EDX19078.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] Length = 464 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 351 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 352 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 411 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 412 DGVDASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 463 >gi|118496920|ref|YP_897970.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida U112] gi|187629823|sp|A0Q4Q1|SYC_FRATN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118422826|gb|ABK89216.1| cysteinyl-tRNA synthetase [Francisella novicida U112] Length = 459 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 407 DGVDASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 458 >gi|89256953|ref|YP_514315.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115315315|ref|YP_764038.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica OSU18] gi|134301406|ref|YP_001121374.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|156503147|ref|YP_001429212.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010049|ref|ZP_02274980.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC200] gi|254368215|ref|ZP_04984235.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|254372282|ref|ZP_04987773.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. novicida GA99-3549] gi|295312486|ref|ZP_06803255.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] gi|109894902|sp|Q2A1T7|SYC_FRATH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|122324692|sp|Q0BKI3|SYC_FRATO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629822|sp|A7NE53|SYC_FRATF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629824|sp|A4IWF2|SYC_FRATW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89144784|emb|CAJ80122.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115130214|gb|ABI83401.1| cysteine--tRNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|134049183|gb|ABO46254.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|134254025|gb|EBA53119.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|151570011|gb|EDN35665.1| cysteinyl-tRNA synthetase [Francisella novicida GA99-3549] gi|156253750|gb|ABU62256.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 464 Score = 577 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 351 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 352 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 411 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 412 DGADASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 463 >gi|197301390|ref|ZP_03166471.1| hypothetical protein RUMLAC_00121 [Ruminococcus lactaris ATCC 29176] gi|197299547|gb|EDY34066.1| hypothetical protein RUMLAC_00121 [Ruminococcus lactaris ATCC 29176] Length = 468 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 182/485 (37%), Positives = 256/485 (52%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTMSKRKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKNYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E I+ + ++ KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKANEE------GVTAEEISKRYIEECKKDMEGMNIQPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I+ +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEIGGMISMIETLIEKGYAYEKNGTVYYRTRKFAEYGKLSHKNLDDLQSGGRALLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP W+SPWG GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWKSPWGEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGFLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNRKMSKSLGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------- 348 + V+R ML HYR P++F+ + + A+ L + + + + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKNGLERITTAAENLKFLINNARTEDMSEDER 344 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A+ +D NT AI A+ +L + D L Sbjct: 345 KKLAGSIAYVENFEKAMDDDFNTADAISAVFELVKYMNTTTDGASSKEYLQNLFDCLIRL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE ++ ++ IE L++ER K K F+ AD IR +L +KG IL+D + Sbjct: 405 TDVLGIIVDKE--DEILASDIEALIEERQAARKAKNFARADEIRDELLAKGIILKDTREG 462 Query: 449 DNGQR 453 ++ Sbjct: 463 VQWKK 467 >gi|166031083|ref|ZP_02233912.1| hypothetical protein DORFOR_00765 [Dorea formicigenerans ATCC 27755] gi|166028930|gb|EDR47687.1| hypothetical protein DORFOR_00765 [Dorea formicigenerans ATCC 27755] Length = 468 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 186/485 (38%), Positives = 256/485 (52%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ +K EF ++ +RMYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTMSKKKEEFIPLEEGKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E I+ + ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIAKANEE------GVTAEEISQRYIEECKKDMAGMNVKPATTNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI LIQ ++ G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIQLIQTLMDKGYAYEKNGTVYYRTRQFKEYGKLSHKNLDDLRSGERSLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W+SPW GRPGWH ECS MS YLG+ DIH GG DL+ Sbjct: 173 ADEKEDPLDFVLWKPKKEGEPFWKSPWSDGRPGWHTECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ + AN W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANG-KTFANYWMHNAFLNIDNRKMSKSLGNFRTVREISE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------- 348 + V+R ML HYR P++F+ + + A+ L + + + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKSSLERIVNAVDNLNFLIKNAKDEPMTAEEA 344 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A A+ +D NT A+ A+ +L R S N D + + Sbjct: 345 ELFAQTDSFVKAFEDAMDDDFNTADAVAAIFELVRYSNTNADAEKTKEYLGKIKDLIVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A +LG+ V K+ + ++ IEKL++ER K K F+ AD IR +L KG IL+D + Sbjct: 405 ADVLGLIVEKKE--EILAEDIEKLIEERQAARKAKDFARADAIRDELLEKGIILKDTREG 462 Query: 449 DNGQR 453 +R Sbjct: 463 VQWKR 467 >gi|254373761|ref|ZP_04989244.1| cysteinyl-tRNA synthetase [Francisella novicida GA99-3548] gi|290954116|ref|ZP_06558737.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] gi|151571482|gb|EDN37136.1| cysteinyl-tRNA synthetase [Francisella novicida GA99-3548] Length = 459 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 407 DGADASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 458 >gi|160881448|ref|YP_001560416.1| cysteinyl-tRNA synthetase [Clostridium phytofermentans ISDg] gi|187629805|sp|A9KSM5|SYC_CLOPH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160430114|gb|ABX43677.1| cysteinyl-tRNA synthetase [Clostridium phytofermentans ISDg] Length = 470 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 179/493 (36%), Positives = 253/493 (51%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL + EF + + MYVCGPTVY++ HIGNARP++VFD + R L Y + Sbjct: 1 MKIYNTLTKAKEEFIPLQEGKVSMYVCGPTVYNYIHIGNARPVVVFDTVRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + I+ + ++++KDT L L T +P+ Sbjct: 60 -VNFVSNFTDVDDKIIKKANEE------GVSAHEISERYIKEYLKDTEALNVLPVTTRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI +I+ +I GHAYE N + F T S YG S++ ID+ + G R+ Sbjct: 113 ATEEIDGMIDMIEELIEKGHAYEKNGTVYFKTRSFKQYGKLSKKNIDDLEAGARIAVADE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF+LWK EP W +PW GRPGWHIECS MS YLG DIH GG DLIFPH Sbjct: 173 KDDPMDFVLWKPKKVGEPAWSAPWCDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ C E A W+HNGFLN++ +KMSKS GNF T+ E+ + Sbjct: 233 HENEIAQTECCTGKE-FAKYWMHNGFLNVDNKKMSKSEGNFFTVREIFA-------EYAP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 V+R +L +YR PI+F+ + ++ L + Sbjct: 285 AVLRFFLLSVNYRSPINFSRDIIESSKNGLERIQTAVEQLHFLAKVKAEKGELSTELTES 344 Query: 345 --------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFN 386 + A+ +D NT AI ++ ++ + S +L Sbjct: 345 ESTLLKEFDALIKKFEDAMDDDFNTADAISSIFEMVKLSNTYVTVESSVEMIQKVLSNIT 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ILG+E K+ + + IE+L+ +R K K F+ +D IR L KG ILED + Sbjct: 405 TFCDILGLETEKKA--EILDEEIEQLIADRQSARKAKDFAKSDEIRNLLLEKGIILEDTR 462 Query: 447 NPDNGQRMTRWKQ 459 +WK+ Sbjct: 463 ------EGVKWKR 469 >gi|77917718|ref|YP_355533.1| cysteinyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] gi|109894916|sp|Q3A8C9|SYC_PELCD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|77543801|gb|ABA87363.1| cysteinyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] Length = 481 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 190/501 (37%), Positives = 264/501 (52%), Gaps = 67/501 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNT+ + EF+ + P + MYVCG TVYD+ HIG+AR +VFD++YR L++ Sbjct: 1 MSLRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN TD+DDKII+RA + + + + Q F +D RL PT Q Sbjct: 61 D--VTYVRNYTDVDDKIIKRANER------GISSDTLAGEFIQAFDEDMNRLGLAEPTIQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI ++ L+Q +I G AYE+ ++ F P+Y S+R +DE + G R+ Sbjct: 113 PKATCHIDHIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DL+F Sbjct: 173 EQKRNPMDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+N+ KMSKS GNF TI ++L+T + Sbjct: 233 PHHENEIAQSEGATG-KPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQT-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------TSTSKG 345 V+R +L HYR PIDF+ Q L +A + LS++ + TS + Sbjct: 285 DPEVLRFFILTAHYRSPIDFSDQNLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGA 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNAS-------- 388 ++ A+ +D NT +AI L R KN + + A Sbjct: 345 TLENVFREAMDDDFNTAAAIGHLFDAVRTINRLITEKGFRKNREKVAQVRALYDALLKLG 404 Query: 389 -----------AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 A + + + IE +++R K K F+ AD IR +L + Sbjct: 405 GVLGLFVSDPAAWLKQMNLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRDELAA 464 Query: 438 KGFILEDYKNPDNGQRMTRWK 458 KG L D G + T WK Sbjct: 465 KGIQLLD------GPQGTAWK 479 >gi|260462295|ref|ZP_05810503.1| cysteinyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] gi|259031789|gb|EEW33057.1| cysteinyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 251/480 (52%), Positives = 327/480 (68%), Gaps = 24/480 (5%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +++YNTL R +F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 5 SKGLRLYNTLTRTKADFTPIDALNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 64 Query: 62 GEKCVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLA 115 GE VTYVRNITD+DDKI RA + +N+AI +T K QF +D L Sbjct: 65 GETHVTYVRNITDVDDKINARALRDFGDEISAGKLSLNEAIRRVTEKTADQFHRDVATLG 124 Query: 116 CLAPTHQPRATNHIP-------QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR 168 CL PT +PRAT + MI LIQ++I GHAY A E++FDT+S+P+YG S+R Sbjct: 125 CLEPTVEPRATEFVEPRADGKADMISLIQSLIERGHAYVAAGEVLFDTASMPDYGQLSKR 184 Query: 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG 228 +DEQ+ G R+ HKKNP DF+LWK S+P EPGW SPWGRGRPGWHIECSAMS+ YLG Sbjct: 185 NLDEQQAGARIAVDAHKKNPGDFVLWKLSSPEEPGWRSPWGRGRPGWHIECSAMSAAYLG 244 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 +VFDIHGGGLDLIFPHHENEIAQS CA + AN+W+HNGFL +EG+KMSKS GNF +I Sbjct: 245 EVFDIHGGGLDLIFPHHENEIAQSRCAHGTDVMANVWMHNGFLQVEGQKMSKSLGNFYSI 304 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKG 345 +ELLET+ FGGR+WP V+RLAMLMTHYREPIDF++++L EAE L KW + + + G Sbjct: 305 HELLETETFGGRNWPGEVLRLAMLMTHYREPIDFSMRKLEEAENTLRKWKRAADLAPTAG 364 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNASAHILGIEVCKEH 400 + V+ AL +DL T +A Q L +LA E+++ + A+ LG ++ Sbjct: 365 QLPAKVVEALSDDLATYAAFQQLTQLAGEASEVEGHGENAAAASLKAALLFLGFDIGAAR 424 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ + + + RL L+ K ++ AD IR L ++G L+D K+P G+R+T W+ K Sbjct: 425 VDE---AEVARSIARRLELIAAKNWAEADRIRDDLLAQGVQLKDGKDPVTGERVTTWEVK 481 >gi|225574357|ref|ZP_03782967.1| hypothetical protein RUMHYD_02424 [Blautia hydrogenotrophica DSM 10507] gi|225038413|gb|EEG48659.1| hypothetical protein RUMHYD_02424 [Blautia hydrogenotrophica DSM 10507] Length = 484 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 181/495 (36%), Positives = 255/495 (51%), Gaps = 62/495 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+KIYNTL ++ EF ++ ++MYVCGPTVY+ HIGNARPMIVFD R + Y Sbjct: 13 EKMKIYNTLSKRKEEFIPLEEGRVKMYVCGPTVYNLIHIGNARPMIVFDTARRYMEYKGY 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDKII +A +E I+ + ++ KD + T Sbjct: 73 K--VNFVSNFTDVDDKIIAKANEE------GVTADEISKRYIEECKKDMEGMNVRPATTH 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--- 178 P AT I M+ +IQ +I G AY A+ + F YG S + +D+ + G R Sbjct: 125 PLATEEIEGMVEMIQTLIDKGFAYPVADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRALQ 184 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG Sbjct: 185 VSGEEQKEDPLDFVLWKPRKEGEPAWPSPWCEGRPGWHIECSVMSKKYLGEEIDIHAGGE 244 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS C + + A W+HNGFLN++ +KMSKS GNF T+ E+ E Sbjct: 245 DLIFPHHENEIAQSECCNG-KVFARYWMHNGFLNIDNKKMSKSLGNFFTVREIAE----- 298 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------------- 341 + V+R ML HYR P++F+ + ++ L + + Sbjct: 299 --QYDLQVLRFFMLNAHYRSPLNFSRDLMEASKNSLERILNGAERLRFLADGAKKIEISP 356 Query: 342 -------TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------DLLPI 384 +K I A+ +D NT A+ A+ +L + + ++ I Sbjct: 357 QEQESLNEAKKIYVSKFEEAMDDDFNTADALAAVFELVKFANTQINEESSKGYVVEVYAI 416 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG+ + KE + + IE+L+ ER KMK F+ AD IR QL + G ILED Sbjct: 417 LKQLCDVLGLIIEKEK--EVLDEDIERLIAERQAARKMKNFAKADEIRDQLTNMGIILED 474 Query: 445 YKNPDNGQRMTRWKQ 459 + +WK+ Sbjct: 475 TR------EGVKWKR 483 >gi|187931126|ref|YP_001891110.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] gi|229558635|sp|B2SFH9|SYC_FRATM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187712035|gb|ACD30332.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] Length = 459 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 175/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNIT+IDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITNIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGNTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 407 DGADASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 458 >gi|313667586|ref|YP_004047870.1| cysteinyl-trna synthetase [Neisseria lactamica ST-640] gi|313005048|emb|CBN86480.1| cysteinyl-trna synthetase (ec 6.1.1.16) (cysteine--trna ligase) (cysrs) [Neisseria lactamica 020-06] Length = 473 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 LYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG+GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGKGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 348 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K N L A I+G+ Sbjct: 349 PSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLLQR 408 Query: 395 ---EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDT---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|289523037|ref|ZP_06439891.1| cysteine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503580|gb|EFD24744.1| cysteine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 475 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 188/495 (37%), Positives = 255/495 (51%), Gaps = 59/495 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YN L R+ EF + P I YVCGPTVYD+ HIGNARP +VFD L R + Y Sbjct: 1 MGLVLYNDLTRRKEEFAPVSPGRIGFYVCGPTVYDYIHIGNARPFVVFDALRRYMEYKGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV+N TDIDDK+I +A Q + + + + + + +D L T Sbjct: 61 E--VIYVQNFTDIDDKMINKANQ------LGITVKELAEQFIEAYFEDIIPLGVRQATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +I LI II +GHAY + + FD S PNYG S + ++E + G R+ Sbjct: 113 PKATEHIDDIIRLISRIIENGHAYIIDGNVYFDVKSYPNYGKLSGQSLEELQAGARIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK EP W+SPWG GRPGWHIECSAM+ YLG DIHGGG DLIF Sbjct: 173 ERKRHPLDFVLWKAKKEGEPWWDSPWGHGRPGWHIECSAMAMKYLGDTIDIHGGGSDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ A ++ WIHNG+L + KMSKS GN + + E+ +++ Sbjct: 233 PHHENEIAQAEAATG-KQFVRFWIHNGYLLINKEKMSKSLGNILNVREIR-------KNF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIID---- 348 +RL +L HYR P+DF+ L +A L + + S K D Sbjct: 285 QPLAVRLFILAAHYRSPLDFSDDSLIQATKSLQRLRNCYSDLLFYMERSQEKNTPDTWLE 344 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLAREST---------------KNHDLLPIFN 386 +AL +D NT A+ A+ ++ R+ K+ D Sbjct: 345 DVVNNGYKRFCNALDDDFNTAGALGAVFEVVRDLNNYLKENETLDKQALIKSKDFFETVE 404 Query: 387 ASAHILGIEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 ++GI E + S IE L++ER K + F+ AD IR +L SKG ILED Sbjct: 405 NILGVIGINTIGEEFAGTLSSSEIEGLIKEREAARKKRDFARADAIRNELASKGIILEDT 464 Query: 446 KNPDNGQRMTRWKQK 460 TRWK+K Sbjct: 465 ------PLGTRWKKK 473 >gi|291550109|emb|CBL26371.1| cysteinyl-tRNA synthetase [Ruminococcus torques L2-14] Length = 468 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 184/485 (37%), Positives = 254/485 (52%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF ++ ++MYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTMSKRKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKNYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVTAEEISQRYIAECKKDMDGMNIEPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I+ +I G+AYE N + + T +YG S + +D+ + G R V Sbjct: 113 ATEEIDGMISMIETLIEKGYAYEKNGTVYYRTRKFKDYGKLSHKNLDDLQSGGRTLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP W SPWG GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWVSPWGEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E + W+HNGFLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FSRYWMHNGFLNIDNRKMSKSLGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------DPA---- 350 + V+R ML HYR P++F+ + + A+ L + + + D A Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEAAKSGLERIITAADRLKFLMGSAKTEDMAETEA 344 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 SA+ +D NT AI A+ L + D L Sbjct: 345 EKFAKSAEYVGNFESAMDDDFNTADAIAAVFDLVKFINTMTDEDSSKEYLENLFDRLVRL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V KE ++ + IE L+ ER K K F+ AD IR +L +KG +L+D + Sbjct: 405 TEVLGIIVDKE--DEILDSDIEALIAERQAARKEKNFARADEIRDELLAKGIVLKDTREG 462 Query: 449 DNGQR 453 +R Sbjct: 463 VQWKR 467 >gi|224475678|ref|YP_002633284.1| cysteinyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] gi|254781694|sp|B9DKW3|SYC_STACT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|222420285|emb|CAL27099.1| cysteinyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] Length = 466 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 168/481 (34%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ ++P ++MYVCGPTVY++ HIGNARP I +DV+ R Y + Sbjct: 2 ITLYNTLTRQKEPFEPLEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I + Q F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKLIKRSKE------LNESVPEIADRYIQAFYEDTGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMNHMDDIIEFIKDLVDKGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIESGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G+GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGKGRPGWHIECSVMAYNELGETIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNF+ +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFVLVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------------- 348 V+R M+ HYR PI++ ++ + A+ L + + + + Sbjct: 286 DVLRFFMISVHYRSPINYNMELVESAKSGLERIRNSYQAIEEREAIATDIEDQSEYIEQI 345 Query: 349 ----PAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + +D NT +AI + LA+ + K +F + +LG Sbjct: 346 DQLLAQFEKVMDDDFNTANAITTWYDLAKLANKYVLENTTSKKVIERFKEVFQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I + + ++ + IE L++ER K K F+ AD IR QL+++ ILED +R Sbjct: 406 IPLKGKQQDELLDEDIEALIEERNEARKNKDFARADEIRDQLKAQNIILEDTAQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|295096713|emb|CBK85803.1| cysteinyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 465 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 178/487 (36%), Positives = 260/487 (53%), Gaps = 49/487 (10%) Query: 1 MKKK-IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 M+ +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 1 MESSMLKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRF 60 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + YVRNITDIDDKII+RA + ++ + + + KD L L P Sbjct: 61 LGYN--LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRP 112 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 +PRAT+HI ++I + Q +I GHAY A+ +++F + P YG+ SR+ +D+ + G R Sbjct: 113 DSEPRATHHIHEIIDITQKLIERGHAYVADNGDVMFSVPTDPTYGALSRQDLDQLQAGAR 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG Sbjct: 173 VDVVDVKRNPMDFVLWKMSKAGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGS 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L Sbjct: 233 DLMFPHHENEIAQSTCAHGGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDP 349 + + A +R ++ HYR ++++ + L +A L + + + Sbjct: 286 -KYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKSVPAAGGEAFEA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL 401 + + +D NT A L +ARE + + L + +LG+ + L Sbjct: 345 RFVEVMNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANALASHLRKLSSVLGLLEQEPDL 404 Query: 402 --------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + IE L++ RL + K +++AD R +L G ILED G + Sbjct: 405 FLQSGAQADDGEVAEIEALIKARLEARQAKDWAAADAARNRLTEMGIILED------GPQ 458 Query: 454 MTRWKQK 460 T W++K Sbjct: 459 GTTWRRK 465 >gi|323703779|ref|ZP_08115417.1| cysteinyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] gi|323531248|gb|EGB21149.1| cysteinyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] Length = 493 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 183/510 (35%), Positives = 256/510 (50%), Gaps = 73/510 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 KK ++IYNTL + EF D ++ MYVCGPT Y+F H+GNARP++ FD + R + Y Sbjct: 5 KKVMEIYNTLTKTKEEFIPRDKGHVSMYVCGPTTYNFIHLGNARPLVFFDTVRRY--FLY 62 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 V YV+N TD+DDKII RA++E + +K ++ D L L Sbjct: 63 KGFKVKYVQNFTDVDDKIINRAKEE------GMDPLALANKYINEYFVDADALNVLRADV 116 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+ + HI ++I LI+ + GHAY + ++ F S P YG S R +++ + G RV Sbjct: 117 HPKVSEHIKEIIDLIKLLEQRGHAYAVDGDVYFAVRSFPEYGKLSGRNLEDMQAGARVEV 176 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KK+P DF LWK + P EP WESPWG GRPGWHIECSAM+ YLG FDIHGGG DLI Sbjct: 177 DVRKKDPMDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMAQKYLGYSFDIHGGGFDLI 236 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + A W+HNGF+ + KMSKS GNF + E+L+ Sbjct: 237 FPHHENEIAQSE-ASCGKPFARYWMHNGFITINQEKMSKSLGNFFLVREILD-------K 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------STSKGIIDP 349 +P V+R +L THYR P+DF ++L A L + S K +D Sbjct: 289 FPPDVVRWFLLSTHYRSPLDFDDEKLQVAGRGLERIKTAVRLLYEALDRPDSAGKEALDA 348 Query: 350 A------------VLSALYNDLNTVSAIQALHKLARESTK----------------NHDL 381 A A+ +D NT AI +L++E D Sbjct: 349 ARFKGKLAALRSEFEQAMDDDFNTALAISVFFELSKEINILVGNLGGVVTPAARQLLADA 408 Query: 382 LPIFNASAHILGIEVCKE-----------HLNKNISIAIEKLVQERLILLKMKKFSSADY 430 + ++LGI + +K + ++ +++ R K +++AD Sbjct: 409 HALVKDFNYVLGILKEDQTSGRLLLEAPAKDDKLVDALVQLIIKIRQEARGKKDWATADA 468 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR L+ G ILED + RWK++ Sbjct: 469 IRDGLKELGIILEDT------PQGVRWKKQ 492 >gi|255067745|ref|ZP_05319600.1| cysteine--tRNA ligase [Neisseria sicca ATCC 29256] gi|255047956|gb|EET43420.1| cysteine--tRNA ligase [Neisseria sicca ATCC 29256] Length = 483 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 186/494 (37%), Positives = 259/494 (52%), Gaps = 58/494 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K + +YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R L Sbjct: 10 KMLNLYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLCECGY 69 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P + Sbjct: 70 --PLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIE 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+AT +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 122 PKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEV 181 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL Sbjct: 182 DGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ 241 Query: 242 FPHHENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFI 286 FPHHENEIAQS A W+HNGF+ ++G KMSKS GNF Sbjct: 242 FPHHENEIAQSVGATGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFF 301 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------- 338 TI E+L + + V+R +L HYR P++++ L +A+ L++ Sbjct: 302 TIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA 354 Query: 339 ---QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG 393 + S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 355 AEFELSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAYLAGCLKALGGIIG 414 Query: 394 I------EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + E + + + IE L+ +R K ++ +D IR L ILED Sbjct: 415 LLQRDPTEFLQGGAVSDGLSNEEIEDLIAQRKQARSDKNWAESDRIRDLLNEHKIILEDN 474 Query: 446 KNPDNGQRMTRWKQ 459 T W++ Sbjct: 475 ------AGGTTWRR 482 >gi|14590527|ref|NP_142595.1| cysteinyl-tRNA synthetase [Pyrococcus horikoshii OT3] gi|6831682|sp|O58370|SYC_PYRHO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|3257043|dbj|BAA29726.1| 476aa long hypothetical cysteinyl-tRNA synthetase [Pyrococcus horikoshii OT3] Length = 476 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 189/495 (38%), Positives = 253/495 (51%), Gaps = 60/495 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL ++ EF+ I+ +RMYVCGPTVYD+ H+G+AR I FDV+ R L + Sbjct: 1 MTLRIYNTLTKQKEEFKPINEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V V N TDIDDKII RA++ + + + K + F++D L Sbjct: 61 --SVLMVMNFTDIDDKIIRRAKE------TGEDPAKLAEKFIKVFLEDMKALKVKPADIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HI +I I+ + G+AYE ++ + F+ YG S K++E + G RV Sbjct: 113 PRVTEHIEDIIQFIERLKEKGYAYEGSDGVYFEVQKFKEYGKLSGVKLEELRKGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK++ P EP WESPWG GRPGWHIECS MSS YLG+ FDIHGGG DLIF Sbjct: 173 EGKKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS E + W+H GF+ ++G KMSKS GNF+T+ ELL + + Sbjct: 233 PHHENEIAQSEACFGHE-WVHYWLHTGFVMVKGEKMSKSLGNFVTVRELL-------QRY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------------- 342 VIR +L HYR P+D++ + L A+ L + T Sbjct: 285 SPEVIRFFVLQKHYRSPLDYSEEGLQHAKNNLERLYNTLENIRIAMENAELAYTWDENDF 344 Query: 343 ----SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFN 386 S A+ +D NT A++A+ +++ K F Sbjct: 345 KAYNSIKEARRKFYEAMDDDFNTAEALKAVFEVSNAINKYITEAEKPKESVLRKAWEFFR 404 Query: 387 ASAHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 I GI E KE K IE L+Q R L K +KF AD IR++L G LED Sbjct: 405 TVGEIFGIFEEYFKEEKAKEEEKLIELLIQVRAELRKERKFELADKIREELRKLGIQLED 464 Query: 445 YKNPDNGQRMTRWKQ 459 + T WK+ Sbjct: 465 K------GKETIWKR 473 >gi|331082990|ref|ZP_08332109.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA] gi|330399727|gb|EGG79388.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA] Length = 468 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 181/485 (37%), Positives = 261/485 (53%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL +K EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R + Y E Sbjct: 1 MRIYNTLTKKKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E + I+S+ ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIAKAVEE------GVSAEEISSRYIKECKKDMADMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ ++ G AYE N + F + YG S + +++ + G R V Sbjct: 113 ATQEIDGMIDMIQTLMDKGFAYEVNGTVYFRVKNFKEYGKLSHKNLEDLQSGFRSLQVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 ENQKEDPLDFVLWKPKKEGEPFWVSPWSEGRPGWHIECSVMSKKYLGEEIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS C + ++ A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSECCNG-KQFARYWMHNAFLNIDNRKMSKSLGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------PQTSTSKG 345 + V+R ML HYR P++F+ + + ++ L + + + ++ Sbjct: 285 YDLQVLRFFMLNAHYRSPLNFSAELMEASKNSLERIITCVEQLKHLLETAEKTEMTETEK 344 Query: 346 IIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 ++ VL ++ +D NT AI A+ +L + + + L Sbjct: 345 ALEVEVLEYVKKYENSMEDDFNTADAIAAIFELVKFANTKANENSTAAFVQYLFDTIVHL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + +LG+ V KE + + IEKL++ER + K K F AD IR +L + G IL+D + Sbjct: 405 SDVLGLIVNKEA--EILDEEIEKLIEERQMARKEKNFKRADEIRDELAAMGIILKDTREG 462 Query: 449 DNGQR 453 +R Sbjct: 463 VQWKR 467 >gi|208780370|ref|ZP_03247711.1| cysteinyl-tRNA synthetase [Francisella novicida FTG] gi|208743738|gb|EDZ90041.1| cysteinyl-tRNA synthetase [Francisella novicida FTG] Length = 464 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 249/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFNYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWNSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 351 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 352 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 411 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 412 DGVDASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 463 >gi|148266184|ref|YP_001232890.1| cysteinyl-tRNA synthetase [Geobacter uraniireducens Rf4] gi|189082065|sp|A5G949|SYC_GEOUR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146399684|gb|ABQ28317.1| cysteinyl-tRNA synthetase [Geobacter uraniireducens Rf4] Length = 494 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 194/514 (37%), Positives = 261/514 (50%), Gaps = 80/514 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL +F I+P ++MYVCG TVYD HIG+AR +VFDV+YR LR E Sbjct: 3 LRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRSLGLE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TDIDDKII RA +E A I+ + ++F +D +L L PT QP+ Sbjct: 62 -VNYVRNYTDIDDKIINRANRE------GVAYDAISERFIKEFDRDMAQLGLLLPTSQPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIP++I L+Q +I G AY+ ++ F Y S+R +++ + G R+ Sbjct: 115 ATEHIPEIITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP WESPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KRHPMDFVLWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+L+ + + Sbjct: 235 HENEIAQSEAASG-KPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEVLD-------KYDS 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 V+R +L HYR P+DF+ Q LTEAE + + + + Sbjct: 287 EVLRFFLLSAHYRSPLDFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEEIDASSL 346 Query: 344 ----------KGIIDPAVLSALYNDLNTVSAIQALHKLAR-----------ESTKNHDLL 382 G + A+ +D NT A+ + L R S L Sbjct: 347 GEAERELFDKSGSLPLRFREAMDDDFNTALAMGHIFDLVRCVNRVLSEAKERSNTLSALC 406 Query: 383 PIFNA----SAHILGIEV---------CKEHLNKNIS---IAIEKLVQERLILLKMKKFS 426 A A +LGI K+ + IE+L+ ER K K F Sbjct: 407 AQVKANIGKIADVLGIFTSEPASLLTRLKDRKASELDISVEEIERLITERAAARKAKDFK 466 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +D IR L K +L D + T W K Sbjct: 467 RSDEIRDFLLGKNIVLLDS------AQGTSWSVK 494 >gi|158521678|ref|YP_001529548.1| cysteinyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] gi|158510504|gb|ABW67471.1| cysteinyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] Length = 479 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 194/498 (38%), Positives = 257/498 (51%), Gaps = 63/498 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYN L K F ++P + MYVCGPTVY HIG+AR ++VFDV+ R LR Sbjct: 1 MTLSIYNVLTGKKELFVPVNPGKVGMYVCGPTVYGPCHIGHARSVVVFDVIARYLRVAGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN TD+DDKII RA +E I K +F +D L T + Sbjct: 61 D--VTYVRNFTDVDDKIIHRAAEE------GKTSEQIAEKYIAEFYRDMDALFVQRATVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI ++ +IQ ++ G AYEA ++ F + P YG S RK+D+ + G R+ Sbjct: 113 PKATEHIDDILAVIQILVNKGVAYEAGGDVFFSVEAFPGYGKLSGRKLDQMEAGARIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF+LWK P EP WESPWGRGRPGWHIEC+AMSS YLG+ FDIHGGG DLIF Sbjct: 173 KRKRNPFDFVLWKAEKPGEPSWESPWGRGRPGWHIECTAMSSRYLGQTFDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A E A W+HNGF+ + KMSKS NF INE+LE ++ Sbjct: 233 PHHENEIAQSEAAFGRE-FARFWVHNGFVQINQEKMSKSLNNFKMINEILE-------AY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------PQTSTSK 344 +RL +L +HYR PIDF+ + EA L K P + Sbjct: 285 HPETVRLFLLSSHYRSPIDFSDTSMAEAGAGLDKLYTALGRVEALTPSGEKPSPASDGDA 344 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------PIFNASAHIL 392 G + A+ +D NT A+ AL + AR + D + S +L Sbjct: 345 GEYWNSFCQAMDDDFNTARAVAALFETARHINRLLDQAGDLLTADVSAHYDVMRKSGDVL 404 Query: 393 GI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 G+ + + I+++V +R+ K K F+ AD +RKQL Sbjct: 405 GLFNTPAQVYFEGRKQAAAKKDAVDPAEIDRMVAQRVAARKAKDFAKADQLRKQLTDLNV 464 Query: 441 ILEDYKNPDNGQRMTRWK 458 +LED + T WK Sbjct: 465 VLEDSPDGT-----TTWK 477 >gi|306819816|ref|ZP_07453471.1| cysteine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552185|gb|EFM40121.1| cysteine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 466 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 180/488 (36%), Positives = 254/488 (52%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ K EF I+ ++MY CGPTVY++ HIGNARP IVFDVL L Y E Sbjct: 1 MKIYNTMTMKKEEFHEIEKGKVKMYSCGPTVYNYFHIGNARPFIVFDVLRNYLEYIGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII++A +E + + K ++ KD + T PR Sbjct: 60 -VTFVQNFTDVDDKIIKKANEE------GISAIEVADKYIDEYYKDAAAIGIRKATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T +I ++I IQ++I G AY ++ F+ YG S + IDE G R+ Sbjct: 113 VTENIKEIIGFIQDLIDKGFAYVLGGDVYFEVKKFDEYGKLSHKNIDELISGARIDVNEQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK E GW+SPWG GRPGWHIECS MS+ YLG DIH GG DLIFPH Sbjct: 173 KKSPLDFALWKEKKEGEIGWDSPWGVGRPGWHIECSVMSNKYLGANIDIHSGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + AN W+HNG++N++ KMSKS GNF T+ ++L + + Sbjct: 233 HENEIAQSECKNGC-TFANYWMHNGYINIDNVKMSKSLGNFFTVRDVL-------KVYDG 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 V+R ML +HYR PI+++ L A+ L + +S Sbjct: 285 DVLRFFMLTSHYRSPINYSKDLLDSAKSSLDRIKNCKSSLDFSLQKSQDKEVSQEEKDIL 344 Query: 346 ----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 I + + +DLNT AI A+ L + + + +L + N + Sbjct: 345 ENVQAIKSTFIEKMNDDLNTADAITAIFDLVKLANTSVNENSSKTFVQSILSMLNELTAV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L I E + + IE+L++ R K K F+ AD IR++L G ++D + Sbjct: 405 LNI-ANNEKAEEQDTSKIEELIELRNQAKKSKDFAKADEIREELRKMGIEIKDTR----- 458 Query: 452 QRMTRWKQ 459 + T+W + Sbjct: 459 -QGTQWSK 465 >gi|77360989|ref|YP_340564.1| cysteinyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] gi|109894923|sp|Q3IF51|SYC_PSEHT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|76875900|emb|CAI87121.1| cysteine tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] Length = 459 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 173/477 (36%), Positives = 258/477 (54%), Gaps = 46/477 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ +F+ + I MYVCG T+YD+ HIG+AR + FDV+ R LR+ + + Sbjct: 4 IYNTLTRQKEQFKPMVEGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYD--L 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITD+DDKII+RA + ++I+ +T + T+ +D L L P +P T Sbjct: 62 KYVRNITDVDDKIIKRANEN------GESINDLTVRMTKAMHEDFDSLNMLRPDVEPTVT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 H+ ++I +++ +I GHAY A + +++FD S+ YG+ S++ + + G+RV K Sbjct: 116 AHMDEIIEMVERLITKGHAYVAADGDVLFDVSTFEQYGALSQQDLTMLQSGSRVEVAQDK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +P DF+LWK++ EP W SPWG GRPGWHIECSAMSS +LG+ FDIHGGG DL FPHH Sbjct: 176 DDPLDFVLWKKAKAGEPSWSSPWGEGRPGWHIECSAMSSKHLGEHFDIHGGGSDLQFPHH 235 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQSCCA+ + N WIH G + + KMSKS NF T+ E+L + + A Sbjct: 236 ENEIAQSCCANNGK-YVNTWIHTGMVQVNKEKMSKSLDNFFTVREVL-------KQYDAE 287 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSALY 356 +R ++ HYR ++++ + L +A L + + A+ Sbjct: 288 SVRYFLISGHYRSQLNYSQENLDQARSSLERIYTALRGVEPVACELDDNEYVIKFRKAMD 347 Query: 357 NDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL------N 402 +D NT A+ L +LA+E D L I + + +LG+ + Sbjct: 348 DDFNTPEALPVLFELAKELNLVKDIDSQQAGQLAFILGSISEVLGVAQQDPEAFLQGGQD 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+ +R K +++AD R L + G ILED T W++ Sbjct: 408 DDEVAQIEALIVKRNDARASKNWAAADEARDALSALGVILEDS------AGKTTWRK 458 >gi|117923730|ref|YP_864347.1| cysteinyl-tRNA synthetase [Magnetococcus sp. MC-1] gi|187629846|sp|A0L4P8|SYC_MAGSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|117607486|gb|ABK42941.1| cysteinyl-tRNA synthetase [Magnetococcus sp. MC-1] Length = 490 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 190/504 (37%), Positives = 257/504 (50%), Gaps = 69/504 (13%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 I IYNTL RK F + P + MYVCG TVYD++HIG+AR M+VFDV+ R LR + Sbjct: 9 GITIYNTLGRKKEPFVPMIPGKVGMYVCGVTVYDYSHIGHARVMVVFDVIARHLRVTGFD 68 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 +TYVRN TDIDDKII+RA + ++I +T + F +D L +P Sbjct: 69 --LTYVRNFTDIDDKIIKRANER------GESIQTLTQRYIDAFHQDMAALGVQPADIEP 120 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT H+P+M+ +I ++ G AY + ++ + NYG S + +DEQ+ G RV Sbjct: 121 KATEHLPEMMQMIGTLMDKGVAYASGGDVYYAVERFANYGQLSGKVLDEQEAGARVEVDS 180 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK + P EP W+SPWG GRPGWHIECSAM + YLG FDIHGGG DLIFP Sbjct: 181 NKQNPMDFVLWKGAKPEEPQWDSPWGAGRPGWHIECSAMGTKYLGASFDIHGGGRDLIFP 240 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNL-----EGRKMSKSNGNFITINELLETKKFG 298 HHENEIAQ+ N WIHNGF+N+ E KMSKS GNF TI +LL Sbjct: 241 HHENEIAQTEGCTGQHA-VNYWIHNGFVNVVNEEGESEKMSKSLGNFHTIRDLLAL---- 295 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 +P V+R +L +HYR P+DF+ L A+ L + Sbjct: 296 ---YPGEVLRFFILNSHYRSPLDFSFSLLEAAKAGLDRIYTALRSAQALLGKLPGTPIGE 352 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIF 385 + + + L A+ +D NT AI L + A+ + Sbjct: 353 PADVPAGAPQDLVENYLKAMDDDFNTPQAIAFLFEAAKMLNTAISEQKDPAVIATWARLI 412 Query: 386 NASAHILGIEVCKEHL---------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 H LG+ L + AIE L+ ER K ++ +D IR L Sbjct: 413 RGLGHHLGLAGQDPELWFRSGIGAEQGLQAEAIEALIAERSAARAAKNWAESDRIRDTLA 472 Query: 437 SKGFILEDYKNPDNGQRMTRWKQK 460 +G +LED GQ T+W +K Sbjct: 473 QQGIVLED------GQHGTQWSRK 490 >gi|221134802|ref|ZP_03561105.1| cysteinyl-tRNA synthetase [Glaciecola sp. HTCC2999] Length = 459 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 171/479 (35%), Positives = 252/479 (52%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL R+ F ++P+ + MYVCG TVYD +H+G+AR + FDV+ R LR+ E Sbjct: 2 LHIFNTLTREKAPFVPLEPNKVGMYVCGITVYDLSHMGHARTYLSFDVMVRYLRHMGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA I N+ +S +T + +D L L P +PR Sbjct: 61 -VKYVRNITDVDDKIIQRA------IENNETMSQLTERTVAMMHEDFAALNLLPPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +I+ ++ GHAY A+ +++FD S+ +YG+ S++ +D+ + G RV Sbjct: 114 VTTHMAEIIEVIEKLVAKGHAYVASSGDVLFDVSTFKDYGALSKQDLDQLQSGARVAVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP W SPWG GRPGWHIECSAM+ +LGK FDIHGGG DL FP Sbjct: 174 GKDDPMDFVLWKKAKANEPSWSSPWGEGRPGWHIECSAMNHKHLGKHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H G + ++ KMSKS GNF T+ +LE Sbjct: 234 HHENEVAQSCCAFDT-PYVNTWVHTGMVQVDNEKMSKSLGNFFTLRSVLEQHHK------ 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVLS 353 +R ++ HYR + ++ L +A+ L + +T G + Sbjct: 287 -ETLRFFLMSAHYRSQLSYSQDNLEQAQSGLERLYTALRDVTPDSRTELGYGGYLARFEA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-----EH 400 A+ +D NT A L A++ K L + + ILG + Sbjct: 346 AMNDDFNTPIAFSVLFDCAKDLNKAKSTDPAEASRLAQVLISLGAILGCLQDDPVNFLQS 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 A+ L+ +R K + +AD R L + G ++ED T W++ Sbjct: 406 DADIDGEAVAALIAQRNQARADKDWGAADAARDALTAMGVVIEDSAT------GTTWRK 458 >gi|167626735|ref|YP_001677235.1| cysteinyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189082064|sp|B0U0I3|SYC_FRAP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167596736|gb|ABZ86734.1| Cysteine--tRNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 459 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 248/478 (51%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L K EF+ I+P+ I+MYVCG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGKKEEFKPIEPNKIKMYVCGITVYDDCHIGHARTNIAFDVINRYFKYRGFD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T+VRNITDIDDKII+RA + + + + + +L L PT +PRAT Sbjct: 61 TFVRNITDIDDKIIKRANEN------GETTDKLVERTIKSMHDAFDKLNILRPTKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+MI +I+ ++ G AY+ N ++ + + +YG S++ ++ + G+RV K Sbjct: 115 QTIPEMIAMIETLVEKGFAYQGTNGDVFYRVAKFADYGKLSKQNLEALEQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TINE++E + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTINEVIE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 VIR + T YR I+++ + L A + + + + A Sbjct: 287 VIRYFLASTVYRSEINYSKENLDNARASVERLFNALRDIEPVEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTVNKYKASGYAFLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IEKL+ ER K K ++ AD IR L+++G ILED T WK+ Sbjct: 407 DGIDVSEIEKLIAERTQAKKDKNYARADEIRNDLQNQGIILEDSAT------GTTWKK 458 >gi|210608929|ref|ZP_03288066.1| hypothetical protein CLONEX_00246 [Clostridium nexile DSM 1787] gi|210152846|gb|EEA83852.1| hypothetical protein CLONEX_00246 [Clostridium nexile DSM 1787] Length = 476 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 186/491 (37%), Positives = 259/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 9 MKLYNTLSRRKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + + I+ + + KD + T P Sbjct: 68 -VNFVSNFTDVDDKIIKKAIEE------GVSANEISQRYIAECKKDMAGMNVKPATKHPL 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ +I G+AYE N + F T YG S + +D+ + G R V Sbjct: 121 ATEEICGMIEMIQELIDKGYAYEKNGTVYFRTRKFDEYGKLSHKNLDDLQSGGRSLLVSG 180 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG DIH GG DL+ Sbjct: 181 EDEKEDPLDFVLWKPKKEGEPAWESPWCDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLV 240 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 241 FPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKSLGNFRTVREISE-------Q 292 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA----------- 350 + V+R ML HYR P++F+ + ++ L++ + ++ A Sbjct: 293 YDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLTRIVTAVDNLKHLENATSAEAMTDVEK 352 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 +A+ +D NT AI ++ +L + + L + Sbjct: 353 ETFEKTKEFVEGFETAMEDDFNTADAIASIFELVKFANTTATAESSKEYLKGLHDLIVKL 412 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A +LG+ V KE + ++ IEKL++ER K K F AD IR +L KG ILED + Sbjct: 413 ADVLGLIVEKEE--ELLAEDIEKLIEERQAARKEKNFKRADEIRNELLEKGIILEDTR-- 468 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 469 ----EGVKWKR 475 >gi|224369425|ref|YP_002603589.1| CysS2 [Desulfobacterium autotrophicum HRM2] gi|223692142|gb|ACN15425.1| CysS2 [Desulfobacterium autotrophicum HRM2] Length = 477 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 184/497 (37%), Positives = 252/497 (50%), Gaps = 63/497 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNT R F ++ + ++MYVCGPTVYD +HIG+AR ++VFDV++R LR+ Sbjct: 1 MSLRIYNTQTRTKETFIPLEKNKVKMYVCGPTVYDTSHIGHARSVVVFDVVFRWLRHSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + C YVRN TD+DDKII RA + + I+ + ++F + L L PT + Sbjct: 61 DVC--YVRNFTDVDDKIINRANE------LGQDPKEISERYIKEFHNEMDALNVLRPTIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 P+AT HI +I IQ +I G AY ++ F S YG S R D+ G+R+ Sbjct: 113 PKATEHIQDIIDFIQRLIDKGKAYHVPGSDVFFSIQSFDEYGKLSGRNPDDMMPGSRIAV 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK P EP W SPWG GRPGWHIECSAMS YLG+ FDIHGGG DLI Sbjct: 173 DDKKRDPKDFTLWKPVKPGEPSWPSPWGDGRPGWHIECSAMSYKYLGESFDIHGGGKDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A + WIHNGF+++ KMSKS GNF I ++L + Sbjct: 233 FPHHENEIAQSEAAFG-KTFVRYWIHNGFVDINNEKMSKSLGNFTMIKDVL-------KD 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------SKGIIDP 349 + V+R+ +L HYR PID+ + E L + G Sbjct: 285 YHPEVMRMFLLSKHYRSPIDYNDTSMDEVISGLDRLYAFVERAQGAGATVNGVEPGKEWA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIFNASAHILG 393 + +A+ +D NT A+ L + + D L ILG Sbjct: 345 SFEAAMDDDFNTARAMATLFDTVKTGNRILDQQGETVSPETLSAVSTLCADLKRMGSILG 404 Query: 394 IEVCKEH-----------LNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I + K++ AIE+L+QER+ + K F+ AD IR +L++ + Sbjct: 405 ILAQEPQDYFRAKKESGLAGKDLDGDAIERLIQERVAARQSKNFARADEIRAELDAMNIV 464 Query: 442 LEDYKNPDNGQRMTRWK 458 LED G T WK Sbjct: 465 LED------GPDGTTWK 475 >gi|254671629|emb|CBA09335.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha153] Length = 473 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 191/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFTPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 348 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGIEVC 397 A+ +D +TV A+ L +LA E K N L A I+G+ Sbjct: 349 PSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLLQR 408 Query: 398 K--EHLNKNIS------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E L ++ IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGVASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|288550004|ref|ZP_05968971.2| cysteine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] gi|288316405|gb|EFC55343.1| cysteine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] Length = 465 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 174/487 (35%), Positives = 259/487 (53%), Gaps = 49/487 (10%) Query: 1 MKKK-IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 M+ +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 1 MESSMLKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRF 60 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + YVRNITDIDDKII+RA + ++ + + + D L P Sbjct: 61 LGYN--LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHNDFDALNIQRP 112 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 +PRAT+HI ++I + + +I GHAY A+ +++F + P YG SR+ +++ + G R Sbjct: 113 DSEPRATHHIHEIIDITEKLIERGHAYVADNGDVMFSVPTDPTYGQLSRQDLEQLQAGAR 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LGK FDIHGGG Sbjct: 173 VDVVDVKRNPMDFVLWKMSKAGEPSWPSPWGEGRPGWHIECSAMNCKQLGKHFDIHGGGS 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L Sbjct: 233 DLMFPHHENEIAQSTCAHGGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDP 349 + + A +R ++ HYR ++++ + L +A L + + + Sbjct: 286 -KYYDAETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVPAAGGEAFEA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK--- 398 + + +D NT A L +ARE + + L + +LG+ + Sbjct: 345 RFVEVMNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANALASHLRKLSSVLGLLEQEPDA 404 Query: 399 -----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 ++ IE+L++ RL + K +++AD R +L G ILED G + Sbjct: 405 FLQSGAQADEGEVAEIEQLIKARLEARQAKDWAAADAARNRLTEMGIILED------GPQ 458 Query: 454 MTRWKQK 460 T W++K Sbjct: 459 GTTWRRK 465 >gi|42779170|ref|NP_976417.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10987] gi|61216251|sp|Q73FB7|SYC_BACC1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|42735085|gb|AAS39025.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 465 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIQAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|260589563|ref|ZP_05855476.1| cysteine--tRNA ligase [Blautia hansenii DSM 20583] gi|260540131|gb|EEX20700.1| cysteine--tRNA ligase [Blautia hansenii DSM 20583] Length = 468 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 181/485 (37%), Positives = 260/485 (53%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL +K EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R + Y E Sbjct: 1 MRIYNTLTKKKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E + I+S+ ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIAKAVEE------GVSAEEISSRYIKECKKDMADMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ ++ G AYE N + F + YG S + +++ + G R V Sbjct: 113 ATQEIDGMIDMIQTLMDKGFAYEVNGTVYFRVKNFKEYGKLSHKNLEDLQSGFRSLQVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 ENQKEDPLDFVLWKPKKEGEPFWVSPWSEGRPGWHIECSVMSKKYLGEEIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS C + ++ A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSECCNG-KQFARYWMHNAFLNIDNRKMSKSLGNFFTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------PQTSTSKG 345 + V+R ML HYR P++F+ + + ++ L + + + + Sbjct: 285 YDLQVLRFFMLNAHYRSPLNFSAELMEASKNSLERIITCVEQLKHLLETAEKTEMTAEEK 344 Query: 346 IIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 ++ VL ++ +D NT AI A+ +L + + + L Sbjct: 345 ALEAEVLEYVKKYENSMEDDFNTADAIAAIFELVKFANTKANENSTAAFVQYLFDTIVHL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + +LG+ V KE + + IEKL++ER + K K F AD IR +L + G IL+D + Sbjct: 405 SDVLGLIVNKEA--EILDEEIEKLIEERQMARKEKNFKRADEIRDELATMGIILKDTREG 462 Query: 449 DNGQR 453 +R Sbjct: 463 VQWKR 467 >gi|301155906|emb|CBW15375.1| cysteinyl-tRNA synthetase [Haemophilus parainfluenzae T3T1] Length = 459 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 183/480 (38%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEVFKPIHEGKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +D+ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIARGHAYVADNGDVMFDVESFKEYGKLSRQDLDQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWPSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVALGGENFVEAFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L A ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELAGILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|332968931|gb|EGK07978.1| cysteine--tRNA ligase [Kingella kingae ATCC 23330] Length = 469 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 176/483 (36%), Positives = 265/483 (54%), Gaps = 48/483 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ +F+ +DP N+RMYVCG TVYD+ H+G+AR ++VFD++ R LR + Sbjct: 2 LQIYNTLTRQKEKFEPLDPKNVRMYVCGMTVYDYCHLGHARVLVVFDMIARWLRQHGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA + I +T + +D+ +L L P +P+ Sbjct: 60 PLTYVRNITDIDDKIIKRANER------GITIQELTEEFITAMNEDSDKLGVLRPDVEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIPQMI +I+++I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 114 ATEHIPQMIQMIEDLIANGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVDVDT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W SPWG+GRPGWHIECSAM G+ FDIHGGG DL FP Sbjct: 174 NKRDPLDFVLWKAAKPEEPHWNSPWGKGRPGWHIECSAMGGELFGQTFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADR-----------IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 HHENEIAQSC A I+ W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 234 HHENEIAQSCGAHNSSCNHNHGDKIIQSHVKYWLHNGFIRVDNEKMSKSLGNFFTIRDVL 293 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------S 341 + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 294 -------KKYQPEVVRFFILRAHYRSPLNYSDAHLDDAKNSLARLYNTLNNVAPAAFELT 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGIEVCKE 399 + +A+ +D T A+ L +LA E+ K + + A +LG+ + Sbjct: 347 ENTNEYTRKFFAAMNDDFGTAEAMSVLFELANEANKHNSAEFAGCLKALGGMLGLLQEEP 406 Query: 400 HL--------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 + + I +L+ +R + K ++ +D IR L + I++D + Sbjct: 407 QAFLQSGASDDGLSADEINELIAQRKTARETKNWAESDRIRDVLAAHKIIVKDSADGTTW 466 Query: 452 QRM 454 R Sbjct: 467 TRG 469 >gi|291546868|emb|CBL19976.1| cysteinyl-tRNA synthetase [Ruminococcus sp. SR1/5] Length = 469 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 182/486 (37%), Positives = 260/486 (53%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ++ ++MYVCGPTVY+ HIGNARPMI+FD + R + Y E Sbjct: 1 MKIFNTLTRRKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIIFDTVRRYMEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+++ ++ KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVSAEEISTRYIKECKKDMADMNVKPATTAPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ +I G+AY A + + F YG S + +D+ + G R V Sbjct: 113 ATQEIQGMIDMIQTLIDKGYAYPAADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLKVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W SPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPSWPSPWCDGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS C + + A W+HNGFLN++ RKMSKS GNF T+ ++ G Sbjct: 233 IFPHHENEIAQSECCNG-KIFARYWMHNGFLNIDNRKMSKSLGNFRTVRQI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------TSKGIIDPA 350 + V+R ML HYR P++F+ + A+ L + + + ++ I + Sbjct: 285 QYDLQVLRFFMLNAHYRSPLNFSADLMEAAKNSLERILEAAGKLSDRKDNGAAENITEEE 344 Query: 351 -------------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 +A+ +D NT A+ A+ +L + + N D L Sbjct: 345 LALLKEAEGFVAKFEAAMDDDFNTADALAAIFELVKFANTNVDENSSREFAGGLYEELFK 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + +LG+++ K+ + + IE L+QER K K F AD IR +L KG IL+D + Sbjct: 405 LSDVLGLKIEKKE--EILDKEIEDLIQERQAARKAKDFQRADEIRDELLKKGIILKDTRE 462 Query: 448 PDNGQR 453 QR Sbjct: 463 GVKWQR 468 >gi|196047745|ref|ZP_03114944.1| cysteinyl-tRNA synthetase [Bacillus cereus 03BB108] gi|225862142|ref|YP_002747520.1| cysteinyl-tRNA synthetase [Bacillus cereus 03BB102] gi|254765177|sp|C1ET19|SYC_BACC3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|196021423|gb|EDX60131.1| cysteinyl-tRNA synthetase [Bacillus cereus 03BB108] gi|225788057|gb|ACO28274.1| cysteine--tRNA ligase [Bacillus cereus 03BB102] Length = 465 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|322381145|ref|ZP_08055148.1| cysteinyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154721|gb|EFX46992.1| cysteinyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 461 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 173/485 (35%), Positives = 253/485 (52%), Gaps = 55/485 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 ++NT+ R+ EF+ + P + MYVCGPTVY++ HIGN RP I FDV++R L Y + V Sbjct: 1 MFNTMTREKEEFKPVVPGKVSMYVCGPTVYNYIHIGNGRPAIFFDVVHRYLTYLGYD--V 58 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV N TD+DDK+I +A + + + + + + +++D L PR T Sbjct: 59 TYVVNFTDVDDKLIRKAEE------TGETVKELADRFIEAYLEDMEALGIRKADINPRVT 112 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++ ++I I++++ G+AYE ++ + T +YG S + +DE + G R+ K+ Sbjct: 113 ENMDEIISFIRSLVDKGYAYENGGDVFYRTQKFADYGKLSHQNLDELQYGIRIEVDERKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 NP DF+LWK + P E W SPWG GRPGWHIECSA+ YLG+ DIHGGG+DL FPHHE Sbjct: 173 NPQDFVLWKAAKPGEVYWSSPWGNGRPGWHIECSALVHKYLGETIDIHGGGVDLTFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 EIAQ+ + A W+HN FLN++ KMSKS GN + + E+L+ K V Sbjct: 233 CEIAQTEALTC-KPMAKYWLHNAFLNIDNEKMSKSLGNGVLVREILKRVK-------PQV 284 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG--------------------I 346 +RL M+M HYR I+F L +A L + + T+ Sbjct: 285 LRLFMMMAHYRNQINFNSDGLEQAANGLERIMNSVTNLKHRLKIAQEGPADEQVKNRIQA 344 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIE 395 I + + +D NT AI A+ +L E+ LL F + +LGI Sbjct: 345 IKAQFEAKMNDDFNTPDAITAVFELVSEANNTLKEERVNVSTLEMLLDQFKSFDTVLGIL 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 +E + IEKL+ ER + K ++ AD IR L KG +LED + Sbjct: 405 EPEE--TDLMDEEIEKLIAERTEARRAKNWARADEIRDILTEKGILLEDT------PQGI 456 Query: 456 RWKQK 460 RW+QK Sbjct: 457 RWRQK 461 >gi|325661900|ref|ZP_08150521.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471878|gb|EGC75095.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA] Length = 468 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 188/486 (38%), Positives = 256/486 (52%), Gaps = 54/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K EF ++ +RMYVCGPTVY+F HIGNARPMIVFD + R Y E Sbjct: 1 MKLYNTLTKKKEEFVPLEEKKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +EH + I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEEHV------SAEEISQRYIAECKKDMEGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I G+AYE N + F T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIEMIGQLIEKGYAYEKNGTVYFRTRKFGPYGKLSHKNLDDLRSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPFWKSPWSDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNRKMSKSLGNFRTVREIAE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------ 349 + V+R ML HYR P++F+ + + ++ L + + + + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMAASKNGLERIITAAENLKYLAANAKNGEMTDAEK 344 Query: 350 -----------AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A A+ +D NT AI A+ +L + + D LL Sbjct: 345 AQIQETEKFVTAFEEAMEDDFNTADAIAAIFELVKFANTTADETSSQAYDSALLERIVHL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + +LGI V KE + ++ IE L++ER K K F AD IR +L KG ILED + Sbjct: 405 SDVLGIIVVKEE--ELLAEDIEALIEERQAARKAKNFQRADEIRNELLEKGIILEDTREG 462 Query: 449 DNGQRM 454 +R+ Sbjct: 463 VKWKRV 468 >gi|225026000|ref|ZP_03715192.1| hypothetical protein EUBHAL_00238 [Eubacterium hallii DSM 3353] gi|224956650|gb|EEG37859.1| hypothetical protein EUBHAL_00238 [Eubacterium hallii DSM 3353] Length = 464 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 187/487 (38%), Positives = 253/487 (51%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF + + MYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTLTKQKEEFVPVHEGKVGMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S I+ + + KD L TH P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEEGVPA------SEISERFIAECKKDMEGLNIEPATHNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI +I +I G+AYE N + F T NYG S++ +D+ + G R+ Sbjct: 113 ATEEIDGMIAMISTLIEKGYAYEKNGTVYFRTRKFKNYGQLSKKNLDDMRAGIRIAVSDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF+LWK EP W SPWG GRPGWHIECS MS Y+G DIH GG DL+FPH Sbjct: 173 KEDAMDFVLWKPKKEGEPAWVSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + EK AN W+HN FLN++ +KMSKS GNF T+ E+ E +P Sbjct: 233 HENEIAQSEACN-DEKFANYWMHNAFLNIDNKKMSKSAGNFFTVREISE-------KYPL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------------PQTS 341 VIR ML HYR P++F+ + ++ L + + Sbjct: 285 QVIRFFMLSAHYRSPLNFSDTLVEASKNGLERILTAIDHLREVIAAAPEGELNVEDQKNL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHIL 392 + +A+ +D NT AI A+ +L + + + LL I IL Sbjct: 345 EEANALKAKYEAAMEDDFNTADAIAAIFELVKLANVTAESGSKAYAQQLLDIIVQLCDIL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI E + + IE L++ER K K F+ AD IR L KG ILED + Sbjct: 405 GI--ITEKKEELLDDDIEALIEERQAARKAKNFARADEIRDLLADKGIILEDTRA----- 457 Query: 453 RMTRWKQ 459 +WK+ Sbjct: 458 -GVKWKR 463 >gi|71280239|ref|YP_270455.1| cysteinyl-tRNA synthetase [Colwellia psychrerythraea 34H] gi|109894893|sp|Q47XL5|SYC_COLP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71145979|gb|AAZ26452.1| cysteinyl-tRNA synthetase [Colwellia psychrerythraea 34H] Length = 469 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 167/489 (34%), Positives = 245/489 (50%), Gaps = 56/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ F I+ + +YVCG TVYD HIG+ R I FD + R LR+ + Sbjct: 2 LQIYNTLSRQKETFTPINAGKVGLYVCGCTVYDLCHIGHGRTYISFDNIARYLRFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD++DKII RA + N+ +T + +D L P +PR Sbjct: 61 -VNYVRNITDVEDKIINRANEN------NETTEALTERTIAAMHQDFDSLNMARPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN--------NEIIFDTSSIPNYGSFSRRKIDEQKMG 176 T H+ ++I +I+ ++ HAY A +++FD SS +YG S + +++ + G Sbjct: 114 VTTHMNEIIAMIETLVTKEHAYVAGANAASTGQGDVLFDVSSYNDYGKLSGQNLEQLQSG 173 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 +RV +K NP DF+LWK + P EP W SPWG GRPGWHIECSAM++ LG FDIHGG Sbjct: 174 SRVEVDQNKNNPLDFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNAKELGHHFDIHGG 233 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL FPHHENEIAQSCCA N W+H G + ++ KMSKS GNF TI ++L Sbjct: 234 GSDLTFPHHENEIAQSCCALNT-PYVNYWMHTGMVQVDQEKMSKSLGNFFTIRDVLA--- 289 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----------KG 345 + A +R + HYR ++++ LT+A + + + Sbjct: 290 ----QYDAETVRFFLTTGHYRSQLNYSTDNLTQARASVERIYTSLRDVNIESDYVINKDS 345 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPIFNASAHILGIE- 395 A+ +D NT A+ L ++++E DL A I+G+ Sbjct: 346 SFVKQFCQAMDDDFNTPQALAVLFEISKELNVAKAAANNALAIDLASTLVALGEIVGLLQ 405 Query: 396 -----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 + + + IE L+ +R K ++ AD R +L + +LED Sbjct: 406 LDPAAFLQGDNDNDEVAIIEALIVQRNQARIDKDWAMADDARDKLNAMNIVLEDS----- 460 Query: 451 GQRMTRWKQ 459 T W++ Sbjct: 461 -AGKTTWRK 468 >gi|331085695|ref|ZP_08334778.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406618|gb|EGG86123.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 468 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 189/491 (38%), Positives = 257/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K EF ++ +RMYVCGPTVY+F HIGNARPMIVFD + R Y E Sbjct: 1 MKLYNTLTKKKEEFVPLEEKKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +EH + I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEEHV------SAEEISQRYIAECKKDMEGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I G+AYE N + F T YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIEMIGQLIEKGYAYEKNGTVYFRTRKFGPYGKLSHKNLDDLRSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPFWKSPWSDGRPGWHIECSVMSKKYLGDQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNRKMSKSLGNFRTVREIAE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------ 349 + V+R ML HYR P++F+ + + ++ L + + + + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMAASKNGLERIITAAENLKYLAANAKNGEMTDAEK 344 Query: 350 -----------AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A A+ +D NT AI A+ +L + + D LL Sbjct: 345 VQIQETEKFVTAFEEAMEDDFNTADAIAAIFELVKFANTTADETSSQAYDSALLERIVHL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + +LGI V KE + ++ IE L++ER K K F AD IR +L KG ILED + Sbjct: 405 SDVLGIIVVKEE--ELLAEDIEALIEERQAARKAKNFQRADEIRNELLEKGIILEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKR 467 >gi|297717798|gb|ADI50042.1| cysteinyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13] Length = 452 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 206/470 (43%), Positives = 279/470 (59%), Gaps = 36/470 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT R+ +F +DP++I+MYVCGPTVYDFAHIGNARP++VFD+L RLLR Y Sbjct: 3 LKVYNTYSRQKEDFVPLDPTHIKMYVCGPTVYDFAHIGNARPVVVFDILSRLLRQLY--P 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI A+ I IT + Q + +D LA AP PR Sbjct: 61 KVTYVRNITDVDDKINAAAKAS------GQTIRTITERTIQAYNEDMAALAAFAPDVTPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI++I+++I +GHAY A ++F + YG SRR DE G RV + Sbjct: 115 ATDHIPEMIHMIEDLIANGHAYAAEGHVLFAVKTFGAYGKLSRRNHDELLAGARVEIAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS YLGK FDIHGGG+DL FPH Sbjct: 175 KRDPGDFVLWKPSDAETPGWDSPWGRGRPGWHIECSAMSEKYLGKTFDIHGGGIDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQSCCA++ + A W+HNG L + G KMSKS GNF T+ ELL + Sbjct: 235 HENELAQSCCANKTDYFAKYWMHNGHLTVNGEKMSKSLGNFYTVRELLS-------EFTG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----KGIIDPAVLSALYNDLN 360 +R ++ HYR+P+D + + + + + L + +G ID ++SAL +DLN Sbjct: 288 ESLRYMLMSAHYRQPLDLSKELIHQCQASLDRLYGALRGIKVYEGGIDDQMMSALLDDLN 347 Query: 361 TVSAIQALHKLARESTKNHD------LLPIFNASAHILGI-----EVCKEHLNKNISIAI 409 A+ LH+LA + K D L AS ++LGI E + + + Sbjct: 348 VPLALARLHELATATNKAEDPQQKSQLASTLKASGYLLGILQQDPEAWFKGATLANADEV 407 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 E L+ +R + F+ AD +R+QL G +LED T W++ Sbjct: 408 EALIAQRNQARSARDFAKADSLRQQLTDMGIVLEDS------PAGTTWRR 451 >gi|168187713|ref|ZP_02622348.1| cysteinyl-tRNA synthetase [Clostridium botulinum C str. Eklund] gi|169294420|gb|EDS76553.1| cysteinyl-tRNA synthetase [Clostridium botulinum C str. Eklund] Length = 466 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 167/489 (34%), Positives = 258/489 (52%), Gaps = 57/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y + Sbjct: 1 MKLFNTMTRQKEEFKPIKDGQVSMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E N + + + Q++ KD L T PR Sbjct: 60 -VNFIQNFTDIDDKMIKKANEE------NITVKELGDRFIQEYYKDADGLNIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++ ++I ++++I G+AYE N ++ F+T YG S + +D+ + G R+ Sbjct: 113 ATEYMDEIIEFVRDLIDKGYAYEVNGDVYFNTKQFKEYGKLSGQNLDDLQAGARISIDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W+ PWG+GRPGWHIECS M+ LG DIH GG DL+FPH Sbjct: 173 KKDPMDFAIWKSEKPGEPSWDCPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + A+ W+H+ +LN++ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARNG-KAFAHYWMHSAYLNIDNKKMSKSLNNFFTTREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+RL ML HYR P++F+ + L A+ + + + V Sbjct: 285 EVVRLFMLSAHYRTPLNFSNELLQSAKASNERLYNAIGNLERLLDEVKIDKITEDEKEYV 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L ++ N + L + Sbjct: 345 KNLNSYKEKYIEKMDDDFNTADAIAVIFDLVKDINTNINTESSKELVEYSLELIRELGKP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI L+ ++ IEKL+++R K + ++ AD IR L+++G +LED Sbjct: 405 LGILQKSTILD--LNTEIEKLIEQRQQARKDRDWALADKIRDDLKARGIVLEDT------ 456 Query: 452 QRMTRWKQK 460 + RWK++ Sbjct: 457 PQGVRWKKE 465 >gi|253702469|ref|YP_003023658.1| cysteinyl-tRNA synthetase [Geobacter sp. M21] gi|259511834|sp|C6E7P0|SYC_GEOSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|251777319|gb|ACT19900.1| cysteinyl-tRNA synthetase [Geobacter sp. M21] Length = 480 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 196/502 (39%), Positives = 261/502 (51%), Gaps = 66/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL EF I+P + MYVCG TVYD HIG+AR +VFD++YR L Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLLSKGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRN TDIDDKII RA ++ A + I+ + ++F D RL PT Q Sbjct: 61 E--VTYVRNYTDIDDKIINRANRD------GVAYNEISERFIKEFDNDMARLMLQLPTFQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HIP++I L+Q +I G AY++ +++ + Y S+R +++ + G R+ Sbjct: 113 PKATEHIPEIINLVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ +LG+ DIHGGG DLIF Sbjct: 173 ERKEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+LE S+ Sbjct: 233 PHHENEIAQSEAASG-KPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILE-------SY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------SKGIIDPA------ 350 A V+R +L HYR PIDF+ Q L EAE+ L + + + G PA Sbjct: 285 DAEVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALAGIDERLASGAHTPADADNTE 344 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAH 390 A+ +D NT A+ L L R + + A Sbjct: 345 FAEKVAGFAGRFGDAMDDDFNTALALGHLFDLVRVINRELPTASTGLLEKVKAEVAKMAA 404 Query: 391 ILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 +LGI + K + + IE L+ ER K K F D IR L K Sbjct: 405 VLGICDSVPAAFLQRMKDRKTSDMEMSAEEIETLIAERAEARKAKNFKRGDEIRDLLLEK 464 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 465 NIVLLDS------AQGTTWKVK 480 >gi|322421697|ref|YP_004200920.1| cysteinyl-tRNA synthetase [Geobacter sp. M18] gi|320128084|gb|ADW15644.1| cysteinyl-tRNA synthetase [Geobacter sp. M18] Length = 480 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 190/502 (37%), Positives = 260/502 (51%), Gaps = 66/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL EF I+P + MYVCG TVYD HIG+AR +VFD++YR L+ Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRYLQAKGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRN TDIDDKII RA ++ I+ + ++F D RL PT Q Sbjct: 61 E--VTYVRNYTDIDDKIINRANRDGVPYN------EISERFIKEFDSDMARLMLRIPTFQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT H+P++I L+Q +I G AY++ +++ + Y S+R +++ + G R+ Sbjct: 113 PKATEHVPEIIALVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ +LG+ DIHGGG DLIF Sbjct: 173 DKKEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+N+ KMSKS GNF TI E+LE + Sbjct: 233 PHHENEIAQSEAASG-KPFVKYWLHNGFVNINAEKMSKSLGNFFTIKEVLER-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 A V+R +L HYR PIDF+ Q L EAE+ L + + + Sbjct: 285 DAEVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALSGIDERLTAGPDHGATEESAE 344 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----HDLLPIFNA----SAH 390 I + A+ +D NT A+ + L R + +LL A Sbjct: 345 LEEKCSAIATRFIEAMDDDFNTAMALGHIFDLVRSINRALPVSPLELLKRVKEEVARIAA 404 Query: 391 ILG---------IEVCKEHLNKNIS---IAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 LG ++ K+ + IE L+ ER + K F +D IR L K Sbjct: 405 TLGVCDSVPAAFLQRMKDRKTSEMEIPVEEIEALIAERAEARRSKNFKRSDEIRDLLLEK 464 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 +L D + T WK K Sbjct: 465 DIVLLDT------PQGTTWKVK 480 >gi|226940330|ref|YP_002795404.1| Syc [Laribacter hongkongensis HLHK9] gi|254781683|sp|C1D7F5|SYC_LARHH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226715257|gb|ACO74395.1| Syc [Laribacter hongkongensis HLHK9] Length = 457 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 187/477 (39%), Positives = 263/477 (55%), Gaps = 44/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ FQ I P + MYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LHLYNTLSRQKERFQPIQPGKVNMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I+++T + +D L P +PR Sbjct: 61 -LTYVRNITDIDDKIIRRAAEN------GEPINVLTQRFIDAMDEDAAALGVQKPNFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +P MI +I+ +I G AY A N ++ + YG S + +D+ + G RV Sbjct: 114 ATQFVPDMISMIEELIGKGRAYAAPNGDVYYAVREFAGYGQLSGKSLDDLRAGERVDVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W SPWG+GRPGWHIECSAM+ HY G FDIHGGG DL FP Sbjct: 174 NKRDPMDFVLWKAAKPGEPAWPSPWGQGRPGWHIECSAMNEHYFGPHFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE + Sbjct: 234 HHENEIAQSEGAHDCK-FVNYWMHNGFIRVDNEKMSKSLGNFFTIREVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-----------VL 352 A V+R +L HYR P++++ L +A LS+ + D A Sbjct: 286 AEVVRFFILRAHYRSPLNYSDAHLEDARSALSRLYTALKNVPAADVALDWEANDYARRFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCK-------EHLNK 403 +A+ +D NTV A+ L +LA E+ K+ +L +LG+ L Sbjct: 346 AAMDDDFNTVEAVAVLFELAGEANKSRSAELAGWLKTLGGVLGLLQRDPVDFLQGGSLEG 405 Query: 404 NISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IS +E+L+ R K ++ +D IR +L ++G +LED G T W++ Sbjct: 406 EISADEVEQLIAARKAARAGKDWAESDRIRDELIARGIVLED------GAGGTTWRR 456 >gi|190568970|ref|ZP_03021871.1| cysteinyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|190559894|gb|EDV13878.1| cysteinyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] Length = 465 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 254/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I ++ + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIANRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|30260280|ref|NP_842657.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Ames] gi|47525344|ref|YP_016693.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183123|ref|YP_026375.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|49481691|ref|YP_034442.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145127|ref|YP_081701.1| cysteinyl-tRNA synthetase [Bacillus cereus E33L] gi|65317550|ref|ZP_00390509.1| COG0215: Cysteinyl-tRNA synthetase [Bacillus anthracis str. A2012] gi|165873141|ref|ZP_02217757.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167635089|ref|ZP_02393406.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|167641949|ref|ZP_02400184.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|170689572|ref|ZP_02880758.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|170707565|ref|ZP_02898018.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|177655593|ref|ZP_02936974.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|196041797|ref|ZP_03109087.1| cysteine--tRNA ligase [Bacillus cereus NVH0597-99] gi|218901292|ref|YP_002449126.1| cysteinyl-tRNA synthetase [Bacillus cereus AH820] gi|227812763|ref|YP_002812772.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. CDC 684] gi|229601947|ref|YP_002864741.1| cysteine--tRNA ligase [Bacillus anthracis str. A0248] gi|254684407|ref|ZP_05148267.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066] gi|254733756|ref|ZP_05191471.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Western North America USA6153] gi|254756312|ref|ZP_05208341.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Vollum] gi|254758390|ref|ZP_05210417.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Australia 94] gi|300119599|ref|ZP_07057143.1| cysteinyl-tRNA synthetase [Bacillus cereus SJ1] gi|33301677|sp|Q81VV1|SYC_BACAN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216160|sp|Q63HB0|SYC_BACCZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216199|sp|Q6HPS8|SYC_BACHK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735045|sp|B7JK97|SYC_BACC0 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765175|sp|C3P9N5|SYC_BACAA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765176|sp|C3LJ62|SYC_BACAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|30253601|gb|AAP24143.1| cysteine--tRNA ligase [Bacillus anthracis str. Ames] gi|47500492|gb|AAT29168.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177050|gb|AAT52426.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|49333247|gb|AAT63893.1| cysteine--tRNA ligase (cysteinyl-tRNA synthetase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978596|gb|AAU20146.1| cysteine--tRNA ligase (cysteinyl-tRNA synthetase) [Bacillus cereus E33L] gi|164711121|gb|EDR16682.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167510080|gb|EDR85491.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|167529563|gb|EDR92313.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|170127561|gb|EDS96435.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|170666485|gb|EDT17262.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|172080057|gb|EDT65155.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|196027417|gb|EDX66034.1| cysteine--tRNA ligase [Bacillus cereus NVH0597-99] gi|218537598|gb|ACK89996.1| cysteinyl-tRNA synthetase [Bacillus cereus AH820] gi|227004950|gb|ACP14693.1| cysteine--tRNA ligase [Bacillus anthracis str. CDC 684] gi|229266355|gb|ACQ47992.1| cysteine--tRNA ligase [Bacillus anthracis str. A0248] gi|298723071|gb|EFI63969.1| cysteinyl-tRNA synthetase [Bacillus cereus SJ1] Length = 465 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|91976542|ref|YP_569201.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] gi|123721921|sp|Q139D9|SYC_RHOPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91682998|gb|ABE39300.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] Length = 463 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 220/465 (47%), Positives = 296/465 (63%), Gaps = 18/465 (3%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL ++ +F +DPS +RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 LRLYDTLTKEKRDFAPLDPSRVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGEN 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI +RA +++P +P+N++I +T + +QF D L CL PT +PR Sbjct: 63 HVKYVRNITDVDDKINDRAARDYPGLPLNESIRKVTEQTERQFHDDVDALGCLRPTVEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKMGT 177 AT HI +M +I ++ G AY A++ ++F ++ P YG+ + R +DE G Sbjct: 123 ATEHIGEMRTIIDRLVEGGFAYVADDHVLFSPGAMNAADSVLPRYGALANRSLDEMIAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIH 234 RV +K++ DF+LWK S P EP W SP G +GRPGWHIECSAMS +LG+ FDIH Sbjct: 183 RVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATQGRPGWHIECSAMSWKHLGETFDIH 242 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL+FPHHENE+AQSCCA + A W+HNGFL +EG KMSKS GNF+TI ELL T Sbjct: 243 GGGIDLVFPHHENEVAQSCCAFHTSRMAQTWMHNGFLQVEGEKMSKSLGNFVTIRELLAT 302 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVLS 353 +KFGGR W +RLAML THYR+PID+T L EAE + W T + V++ Sbjct: 303 EKFGGRKWDGATLRLAMLKTHYRQPIDWTADALHEAEKAIFDWSDFTKDATPGSCDDVIA 362 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLV 413 AL +DLNT I LH L R K +L +LGI ++ + L+ Sbjct: 363 ALTDDLNTPKMIAELHALRRAG-KADELCGAM----ELLGISPVVRGT-VDLDATAKSLI 416 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 R K F +D IR +L + G ++D K+ D G+ +T W+ Sbjct: 417 DARTAARARKDFKESDRIRDELAAMGIAIKDGKDSD-GKPVTTWE 460 >gi|324324079|gb|ADY19339.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 465 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLRSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIQAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|297582426|ref|YP_003698206.1| cysteinyl-tRNA synthetase [Bacillus selenitireducens MLS10] gi|297140883|gb|ADH97640.1| cysteinyl-tRNA synthetase [Bacillus selenitireducens MLS10] Length = 467 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 267/489 (54%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL R+ FQ I+ ++MYVCGPTVY++ HIGNARP +VFD++ R L Y Sbjct: 1 MTIQLYNTLTRQKETFQPIEEGKVKMYVCGPTVYNYIHIGNARPAVVFDMVRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV N TD+DDKII+ A + +++ + + + + DT L Sbjct: 61 D--VTYVSNFTDVDDKIIKAANE------LDEDVMTVAERYIAAYYNDTEALGVRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + +I I +I G+AYE++ ++ F T YG S++ +D+ + G R+ + Sbjct: 113 PRVTESMDDIITFITRLIDKGYAYESSGDVYFRTRKFDTYGQLSQQSLDDLQAGARIQVE 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + E W SPWG GRPGWHIECSAM +LG DIH GG DL F Sbjct: 173 EKKEDPLDFVLWKTAKEGEIAWSSPWGEGRPGWHIECSAMVKKHLGDTIDIHAGGQDLSF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + ++ AN WIHNG++N++ KMSKS NFI +++++ R + Sbjct: 233 PHHENEIAQSEALN-EQRMANYWIHNGYINIDNEKMSKSLNNFILVHDII-------RQF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------QTSTSKGIID--- 348 V+R ++ HYR PI+F+ ++L A+ L + +++ G D Sbjct: 285 DPDVVRFFIVNAHYRSPINFSDEQLETAKTSLERIQTTYENLTYRLGESADLGGGQDKWF 344 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 ++++ +D N+ +A+ + L R++ L F+ A Sbjct: 345 ALIRKEGERFIASMDDDFNSANAVAVMFDLVRQANIYLTEKHTSKEVLEAFLKQFDDMAF 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI V ++ + + +E+L++ER+ K + F+ AD IR L+ +G ILED Sbjct: 405 VLGIAVKRQA--ELLDEDVEQLIEERIQARKDRDFARADEIRDSLKDQGIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -PQGTRWKR 465 >gi|327438250|dbj|BAK14615.1| cysteinyl-tRNA synthetase [Solibacillus silvestris StLB046] Length = 467 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 175/489 (35%), Positives = 261/489 (53%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R L+Y Sbjct: 1 MTIQIFNSLTRQKEPFIPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYLQYAGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V +V N TD+DDKII+ A + + + S++T + + +D T L C Sbjct: 61 E--VKFVSNFTDVDDKIIKAANE------LGEETSVLTDRFIAAYFEDITALGCQKADAH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ +I I+ +I G+AYE+ ++ + T YG S + ID+ K+G R+ Sbjct: 113 PRVTEHMDDIIEFIKVLIDKGYAYESQGDVYYRTRKFNGYGKLSHQSIDDLKVGARIEAG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E W SPWG GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 173 EKKEDPLDFALWKAAKAGEIKWASPWGEGRPGWHIECSVMAREHLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 233 PHHENEIAQSE-AHNDKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------QQI 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+F + A+ L + + T+ Sbjct: 285 DPQVLRFFMLSVHYRNPINFAQDLVEAAKNGLDRIRTSYTNVAHRLTSSASLGDNSEQWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLA-------RESTKNHDLLPI----FNASAH 390 G I +A+ +D NT +A+ AL +L+ E+ + ++L F+ + Sbjct: 345 EKIGQIKVDFENAMNDDFNTANAVSALFELSHIANVYLNEANTDKEVLQAILTMFDTIGN 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI + E + IE L++ER K + F+ +D IR QL +LED + Sbjct: 405 VLGIHIKVEA--GLLDEEIEALIEERNQARKNRDFARSDEIRDQLLGMDIVLEDTR---- 458 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 459 --QGTRWKR 465 >gi|153871051|ref|ZP_02000318.1| Cysteinyl-tRNA synthetase, class Ia [Beggiatoa sp. PS] gi|152072482|gb|EDN69681.1| Cysteinyl-tRNA synthetase, class Ia [Beggiatoa sp. PS] Length = 463 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 185/484 (38%), Positives = 273/484 (56%), Gaps = 50/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+N+L ++ F I+P +R+YVCG TVYD+ H+G+AR MIVFDV+ R LR E Sbjct: 2 LTIHNSLTKQKDPFTPIEPGKVRLYVCGMTVYDYCHVGHARVMIVFDVVVRYLRSLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I+ +T + Q +DT L + P +PR Sbjct: 61 -VTYVRNITDIDDKIIQRANEN------GEDINQLTDRFIQAMYEDTDALNVIRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP+++ +IQ+++ +AY + ++ + NYG S + +D+ + G RV Sbjct: 114 ATQSIPEIVAMIQSLLDKNYAYLTDNGDVCYAIQRFENYGQLSGKHLDDLRAGERVEVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP WESPWG GRPGWHIECSAMS+H LG FDIHGGG+DL FP Sbjct: 174 SKQHPLDFVLWKTAKPGEPSWESPWGAGRPGWHIECSAMSTHCLGNHFDIHGGGMDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N+W+HNGF+ + KMSKS NF T+ E+LE + Sbjct: 234 HHENEIAQSEGATG-ETFVNVWMHNGFVRINDEKMSKSLNNFFTVREVLER-------YQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLSA 354 V+R +L +HYR ++++ Q L A+ +++ D L+A Sbjct: 286 PEVVRYFILTSHYRSELNYSEQELEAAKQSITRLYIAIRDLPNTDEPCPDDSYNQRFLTA 345 Query: 355 LYNDLNTVSAIQALHKLAREST-----KNHDLLPIFNASAHILG------------IEVC 397 + +D NT A+ AL L++E K + +P+ + + ++ Sbjct: 346 MNDDFNTPEALAALFSLSKEINILRRKKVSEAIPLASELRRLGNLLGLLQAKPETFLQGT 405 Query: 398 KEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + +S+ IE+L+ ER+ K + F++AD IR L +KG ILED + T Sbjct: 406 SQEKEPGLSVTEIEQLIVERIDARKNRDFATADQIRADLTAKGIILEDN------AQGTS 459 Query: 457 WKQK 460 W+++ Sbjct: 460 WRKE 463 >gi|153855861|ref|ZP_01996836.1| hypothetical protein DORLON_02858 [Dorea longicatena DSM 13814] gi|149751829|gb|EDM61760.1| hypothetical protein DORLON_02858 [Dorea longicatena DSM 13814] Length = 468 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 182/485 (37%), Positives = 253/485 (52%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ +K EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTMTKKKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVTADEISKRYIAECKKDMDGMNIKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +IQ +I G AYE N + + T +YG S + +D+ + G R V Sbjct: 113 ATEEICGMVDMIQTLIDKGFAYEKNGTVYYSTRKFKDYGKLSHKNLDDLRSGERSLLVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKSLGNFRTVREISE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----------SKGIIDPA- 350 + V+R ML HYR P++F+ + ++ L + + ++ I D Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERIVNAADNLKFLMENAKAEAITDAEA 344 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A+ +D NT A+ A+ L + D L + Sbjct: 345 ENFAKTEEFVAGFEKAMDDDFNTADAVAAIFDLVKYINTTTDAESSKEYLQKLFDLLVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG+ V K+ + + IEKL++ER K K F+ AD IR +L KG IL+D + Sbjct: 405 TGVLGLIVDKKE--EILDEDIEKLIEERQAARKAKDFARADAIRDELLEKGIILKDTREG 462 Query: 449 DNGQR 453 +R Sbjct: 463 VQWKR 467 >gi|298369710|ref|ZP_06981027.1| cysteine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282267|gb|EFI23755.1| cysteine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 473 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 186/490 (37%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F I+P N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFTPINPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------Q 339 +L + + V+R +L HYR P++++ L +A+ L++ + Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAVAFE 348 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 S + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAVSDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|261378624|ref|ZP_05983197.1| cysteine--tRNA ligase [Neisseria cinerea ATCC 14685] gi|269144957|gb|EEZ71375.1| cysteine--tRNA ligase [Neisseria cinerea ATCC 14685] Length = 473 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 187/492 (38%), Positives = 257/492 (52%), Gaps = 58/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 LNIYNTLTRQKEPFTPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+ Sbjct: 60 PLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 114 ATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDG 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FP Sbjct: 174 FKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENEIAQS A W+HNGF+ ++G KMSKS GNF TI Sbjct: 234 HHENEIAQSVGASGHSCGHNHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTI 293 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---- 344 E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 294 REVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAK 346 Query: 345 -------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG-- 393 +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 347 FDLFENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLL 406 Query: 394 ----IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 IE + + + I+ L+ R K ++ +D IR L ILED Sbjct: 407 QRDPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN-- 464 Query: 448 PDNGQRMTRWKQ 459 T W++ Sbjct: 465 ----AGGTTWRR 472 >gi|328675472|gb|AEB28147.1| Cysteinyl-tRNA synthetase [Francisella cf. novicida 3523] Length = 459 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 254/478 (53%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +P+AT Sbjct: 61 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+MI +I+ +I G+AY+ AN ++ + S +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMIAMIETLIEKGYAYQGANGDVFYRVSKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPIDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + K T + + A Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVEKLFNTLRDIEPVEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEV--CKEHLNKN 404 + ND NT A+ L LA+E K + +LGI +E+ + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 405 ISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 S+ IE+L+ ER K K + AD IR QL+ +G ILED T WK+ Sbjct: 407 DSVDVGEIERLIVERTQAKKDKNYLRADEIRNQLQEQGIILEDSAT------GTTWKK 458 >gi|261400776|ref|ZP_05986901.1| cysteine--tRNA ligase [Neisseria lactamica ATCC 23970] gi|269209376|gb|EEZ75831.1| cysteine--tRNA ligase [Neisseria lactamica ATCC 23970] Length = 473 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 188/489 (38%), Positives = 257/489 (52%), Gaps = 58/489 (11%) Query: 8 YNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVT 67 YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +T Sbjct: 5 YNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PLT 62 Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127 YVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 63 YVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKATE 116 Query: 128 HIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K+ Sbjct: 117 NIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FPHHE Sbjct: 177 DPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHHE 236 Query: 247 NEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 NEIAQS A W+HNGF+ ++G KMSKS GNF TI E+ Sbjct: 237 NEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREV 296 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA- 350 L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 297 L-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPMP 349 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI---- 394 A+ +D +TV A+ L +LA E K N L A I+G+ Sbjct: 350 SEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLLQRD 409 Query: 395 --EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 E + + + I+ L+ R K ++ +D IR L ILED Sbjct: 410 PTEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDT----- 464 Query: 451 GQRMTRWKQ 459 T W++ Sbjct: 465 -AGGTTWRR 472 >gi|47569824|ref|ZP_00240494.1| cysteinyl-tRNA synthetase [Bacillus cereus G9241] gi|47553517|gb|EAL11898.1| cysteinyl-tRNA synthetase [Bacillus cereus G9241] Length = 465 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 254/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+++ ILED Sbjct: 405 ILGLELAQEDL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKNRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|239625541|ref|ZP_04668572.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519771|gb|EEQ59637.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 469 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 184/492 (37%), Positives = 256/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF + P ++MYVCGPTVY+ HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRRKEEFVPLTPGEVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E ++ + ++ KD + T P+ Sbjct: 60 -VKYVSNFTDVDDKIIKKAIEE------GVDADTVSQRYIEECKKDMAAMNVKPATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +IQ +I GHAY A + + F T S YG S + +DE + G R V Sbjct: 113 ATQEICGMLEMIQTLIDKGHAYVAKDGTVYFRTGSFKEYGKLSHKNLDELQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P+DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEGKEDPSDFVLWKPKKEGEPFWESPWCNGRPGWHIECSVMSKRYLGEQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECAN-DKPFATYWMHNAFLNIDNKKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQTSTS 343 + V+R ML HYR P++F+ + ++ L + QT Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERILTCVDKLRDLEAKAEGAAQTCAE 344 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 +G ++ A A+ +D NT AI + +L + + D L Sbjct: 345 QGSMEEAGKLLGRFEEAMDDDFNTADAISVVFELVKLANTTADSGSTKAYVSFLKKNIEQ 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + IE+++ R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVLGI--ITEKKEEVLDSDIEEMIAARQQARKDKDFALADEIRGKLLDMGIVLEDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|325208933|gb|ADZ04385.1| cysteinyl-tRNA synthetase [Neisseria meningitidis NZ-05/33] Length = 473 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|110803392|ref|YP_699686.1| cysteinyl-tRNA synthetase [Clostridium perfringens SM101] gi|122956489|sp|Q0SQC1|SYC_CLOPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110683893|gb|ABG87263.1| cysteine--tRNA ligase [Clostridium perfringens SM101] Length = 466 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 171/488 (35%), Positives = 246/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y + Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEE------GITVKKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFEGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILER-------YDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIR ML HYR+ ++F+ L A+ + + + + V Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ N+ IE L+ +R K + F+ AD IR +L+ +G +LED Sbjct: 406 LG--MFQKSTKGNLEEEIEALIAKRQQARKDRDFALADKIRDELKDRGIVLEDT------ 457 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 458 PQGVRWKR 465 >gi|288554704|ref|YP_003426639.1| cysteinyl-tRNA synthetase [Bacillus pseudofirmus OF4] gi|288545864|gb|ADC49747.1| cysteinyl-tRNA synthetase [Bacillus pseudofirmus OF4] Length = 465 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 173/486 (35%), Positives = 256/486 (52%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN+L +K F ++ ++MYVCGPTVY++ HIGNARP IV+D++ R L Y E Sbjct: 3 IQLYNSLTKKKETFVPMEEGKVKMYVCGPTVYNYIHIGNARPPIVYDMVRRYLEYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII A + + + + ++ +++ DT L PR Sbjct: 62 -VEFISNFTDVDDKIIRAA------HELGEDVFAVANRFIEEYHNDTCALGVKKANKHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T IP++I + +I +AYE+ ++ F T YG S + ID+ + G R+ Sbjct: 115 VTETIPEIIEFVAKLIEKEYAYESGGDVYFRTKKFEGYGKLSSQSIDDLRSGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E WESPWG GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKAAKEGEVSWESPWGDGRPGWHIECSAMVKKYLGDTIDIHAGGKDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N+ KMSKS GNF+ ++++ R A Sbjct: 235 HENEIAQSEALTG-KTMANYWMHNGFININNEKMSKSLGNFVLAHDII-------RQHSA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 V+R ML HYR PI+F+ + L A+ L + +S Sbjct: 287 EVVRFFMLTAHYRSPINFSDELLDGAKNGLERLRTAVSSLEHRLGESADYGEKAEWLTKI 346 Query: 346 -IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + A + + +D N+ + I + LA+E+ + H + +F+ A +LG Sbjct: 347 SQLKEAFIKEMDDDFNSANGIAVMFDLAKEANRYLREEQTSKEVLHAFIDLFDELADVLG 406 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I V + + + IE L++ER + + F AD IR QL+ +G +LED + Sbjct: 407 IVVRTQA--ELLDTEIEALIEERNETRRSRNFKRADEIRDQLKDQGILLEDT------AQ 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKR 464 >gi|241758928|ref|ZP_04757040.1| cysteine--tRNA ligase [Neisseria flavescens SK114] gi|241320749|gb|EER56982.1| cysteine--tRNA ligase [Neisseria flavescens SK114] Length = 477 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 190/493 (38%), Positives = 260/493 (52%), Gaps = 59/493 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F I+P N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFTPINPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N+++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAVNDDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 408 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ-KP 461 T W++ KP Sbjct: 465 --AGGTTWRRGKP 475 >gi|229542225|ref|ZP_04431285.1| cysteinyl-tRNA synthetase [Bacillus coagulans 36D1] gi|229326645|gb|EEN92320.1| cysteinyl-tRNA synthetase [Bacillus coagulans 36D1] Length = 465 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 255/486 (52%), Gaps = 51/486 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYNTL RK F ++ ++MYVCGPTVY++ HIGNARP IVFD + R L + Sbjct: 1 MSIQIYNTLTRKKEPFIPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLAFRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A++ + + ++ + + + +D L C Sbjct: 61 D--VNYVSNFTDVDDKLIKAAKER------GEEVPALSERFIKSYFEDIDALGCCHADAH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I I+ +I GHAYE+ ++ + T S P+YG S + IDE K G R+ Sbjct: 113 PRVTENMDAIIAFIEKLIEKGHAYESGGDVYYHTRSFPDYGKLSHQSIDELKSGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMAKKYLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GN + +++++E Sbjct: 233 PHHENEIAQSEALT-DKPFARYWMHNGYINIDNEKMSKSLGNIVLVHDIIERH------- 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDP--- 349 V+R ML HYR PI+++ + L A+ L + ++S + D Sbjct: 285 DPQVLRFFMLSVHYRHPINYSEELLANAKAGLERIKTSYQNVKHRLESSANLAEDDEKWL 344 Query: 350 --------AVLSALYNDLNTVSAIQALHKLAREST-----KNHD---LLPIFNASAHILG 393 + A+ +D NT + I L +L++++ KN L I G Sbjct: 345 EQVRSLHRQFIEAMDDDFNTANGISVLFELSKQANYYLRGKNTTETVLRAFMKEFETISG 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + K + IE L+++R K + F AD IR +L+S ILED + Sbjct: 405 VLGLKLEEEVLLDEEIEALIEKRNEARKARNFQLADEIRDKLKSMNIILEDT------PQ 458 Query: 454 MTRWKQ 459 RW++ Sbjct: 459 GVRWRR 464 >gi|218134243|ref|ZP_03463047.1| hypothetical protein BACPEC_02135 [Bacteroides pectinophilus ATCC 43243] gi|217991618|gb|EEC57624.1| hypothetical protein BACPEC_02135 [Bacteroides pectinophilus ATCC 43243] Length = 474 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 185/494 (37%), Positives = 256/494 (51%), Gaps = 60/494 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K +KIYNTL K EF ++ ++MYVCGPTVY+ HIGNARPMIVFD + R L Y Sbjct: 4 KTNMKIYNTLTAKKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYLEYKG 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A +E +I+++ + KD + T Sbjct: 64 YE--VNYVSNFTDVDDKIIKAANEE------GVTADVISTRYIAECKKDMAGMNVKPATK 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--- 178 P AT I MI LIQ +I G+AY N + + T YG S++ ID+ + G R Sbjct: 116 HPLATEEIDGMIELIQTLIDKGYAYNVNGTVYYRTRKFKGYGKLSKKNIDDLEAGHRDIK 175 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK EP WESPW GRPGWH ECS M+ YLG+ DIH GG Sbjct: 176 VAGGEEKEDPLDFVLWKPKKEGEPYWESPWSEGRPGWHTECSVMAKKYLGESIDIHAGGE 235 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS A+ + + + W+HN FL + KMSKS GNF T+ ++ Sbjct: 236 DLIFPHHENEIAQSEAANGV-QFSKYWMHNAFLKINNVKMSKSLGNFFTVRDI------- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-IIDPA------- 350 + V+R ML HYR P++F+ + + A+ L + + + +ID A Sbjct: 288 AAKYDLQVLRFFMLSAHYRNPLNFSEELMESAKNSLERITTAAGNLNHMIDNAQDREVSE 347 Query: 351 ---------------VLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIF 385 +A+ +D NT AI A+ + + + + D+L Sbjct: 348 EEKNILAQLDGMIKQFENAMDDDFNTADAITAIFDMVKLANTSCKSSDSKKFLQDVLDKI 407 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + ILG+EV E + + I+ L+QER K + F+ AD IR+ L KG +LED Sbjct: 408 AGTCGILGLEVVSEK--ELLDEDIDNLIQERQQARKDRNFARADEIRQLLLDKGIVLEDT 465 Query: 446 KNPDNGQRMTRWKQ 459 + RWK+ Sbjct: 466 R------EGVRWKR 473 >gi|256823180|ref|YP_003147143.1| cysteinyl-tRNA synthetase [Kangiella koreensis DSM 16069] gi|256796719|gb|ACV27375.1| cysteinyl-tRNA synthetase [Kangiella koreensis DSM 16069] Length = 465 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 244/486 (50%), Gaps = 52/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN L R+ F+ ++ + MYVCG T YD HIG+AR FDV+ R L++ + Sbjct: 2 LQIYNNLTRQKEPFKPMEEGKVSMYVCGVTTYDLCHIGHARTYAAFDVINRFLKFSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + S +T + Q+ +D + P +PR Sbjct: 61 -VTYVRNITDIDDKIINRANEN------GEDFSELTERFIQEMYQDFDAIGLQRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I + Q +I G AY + ++ F + +YG S++ + + G RV Sbjct: 114 ATQTMDEIIQMTQTLIEKGAAYATDNGDVYFHVPAFKDYGKLSKQDLTQLNAGERVDVND 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 IKKDPMDFALWKSSKPGEPSWDSPWGKGRPGWHIECSAMSKKCLGDTFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA+ A +WIH G + ++ KMSKS GNF TI ++L + + Sbjct: 234 HHENEIAQSECANDC-TFARVWIHTGMVQVDKEKMSKSLGNFFTIRDVL-------KQYR 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPA--- 350 +R ++ HYR + +T L A+ L + T GI++ A Sbjct: 286 PESVRYFLMSGHYRSQLSYTQANLESADASLERLYTSLRGVDFNRATDDKLGILEQAQLR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEH-- 400 A+ +D N A+ L LA+E + + A +L + Sbjct: 346 FTEAMDDDFNVPEAMPVLFDLAKEVNRLKATDMATAATIAVKIKELAGVLSLLQQDPESF 405 Query: 401 ------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I+ L+Q+RL K + AD IR +L + LED Sbjct: 406 LKSGAGDSDVSDEDIDSLIQQRLQARADKNWDLADEIRDKLHAMNIELED------AAGG 459 Query: 455 TRWKQK 460 T W++K Sbjct: 460 TSWRRK 465 >gi|153952840|ref|YP_001393605.1| cysteinyl-tRNA synthetase [Clostridium kluyveri DSM 555] gi|219853505|ref|YP_002470627.1| hypothetical protein CKR_0162 [Clostridium kluyveri NBRC 12016] gi|187629803|sp|A5N4M6|SYC_CLOK5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765185|sp|B9DY88|SYC_CLOK1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146345721|gb|EDK32257.1| CysS [Clostridium kluyveri DSM 555] gi|219567229|dbj|BAH05213.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 254/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NT+ R+ EF + P I+MYVCGPTVY+F HIGNAR +VFD + R Y + Sbjct: 1 MRIFNTMTRRKEEFVPLIPGEIKMYVCGPTVYNFFHIGNARTFVVFDTVRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A E N + + + ++ +D L T PR Sbjct: 60 -VNFVQNFTDIDDKMIKKANDE------NITVQQLGDRFIDEYYRDADALNIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I IQ++I G+AY + ++ F+ NYG S + I++ + G R+ Sbjct: 113 ATLYISKIIEFIQDLIDKGYAYSVDGDVYFNAKKFNNYGKLSGQNIEQLQSGARIDIDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF +WK EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKNPMDFAVWKSEKKGEPSWESPWGMGRPGWHIECSCMAYNILGETIDIHAGGSDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+H+ F+N+ +KMSKS NF T E+L+ + Sbjct: 233 HENEIAQSEGRTG-KVFAKYWMHSAFVNINNQKMSKSLNNFFTTREILD-------KYEP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------WPQTSTSKGIIDPAV--- 351 VIRL ML HYR PI+F+++ L + L + + GI+D + Sbjct: 285 DVIRLFMLSGHYRTPINFSIELLDSTKSALDRICNSIINLEELSSKVKNDGILDSEIKYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + + +D NT AI + L R+ N D L + Sbjct: 345 EHLNSYKQRYIEKMDDDFNTADAISVIFDLIRDINTNIDENSSMEIIKYSLALIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ +I +E L+++R K K ++ AD IR L+ KG ILED + Sbjct: 405 LGI--LQKSKRGSIETEVELLIEKRQKARKDKNWALADKIRDDLKDKGIILEDTSD---- 458 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 459 --GVRWKR 464 >gi|254724230|ref|ZP_05186015.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. A1055] Length = 465 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSIGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|254473467|ref|ZP_05086864.1| cysteinyl-tRNA synthetase [Pseudovibrio sp. JE062] gi|211957583|gb|EEA92786.1| cysteinyl-tRNA synthetase [Pseudovibrio sp. JE062] Length = 483 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 227/465 (48%), Positives = 291/465 (62%), Gaps = 28/465 (6%) Query: 15 ITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITD 74 F +D SN+RMYVCGPTVYD+AHIGNARP++VFDVL RLLR YG+ VTYVRNITD Sbjct: 22 KEAFVPMDASNVRMYVCGPTVYDYAHIGNARPVVVFDVLARLLRQLYGKDHVTYVRNITD 81 Query: 75 IDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIY 134 +DDKI ERA +E +I +T K Q+ D L AP +PRAT HI +M Sbjct: 82 VDDKINERAARE------GISIRELTEKTAGQYHADMEALGAQAPDIEPRATEHIEEMKV 135 Query: 135 LIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILW 194 +I+ ++ GHAY A+ ++F S+P YG S R +DE G RV +KK+P DF+LW Sbjct: 136 MIETLVDKGHAYVADEHVLFHVPSMPEYGKLSNRTLDEMVAGARVEVASYKKDPTDFVLW 195 Query: 195 KRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQ 251 K S EPGWESP G GRPGWHIECSAMS +LGKVFDIHGGG+DL FPHHENEIAQ Sbjct: 196 KPSKADEPGWESPCGIETPGRPGWHIECSAMSEKHLGKVFDIHGGGVDLTFPHHENEIAQ 255 Query: 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 S CA AN+W+HNGFL +EG KMSKS GNF T+++LL+T++ GGR W IR A+ Sbjct: 256 SRCAHDTHAMANVWLHNGFLQVEGEKMSKSLGNFFTVHQLLDTEEGGGRKWSGQAIRYAL 315 Query: 312 LMTHYREPIDFTVQRLTEAEILLSKWPQ-------TSTSKGIIDPAVLSALYNDLNTVSA 364 L T YR+PIDFT + L E E L++W T+ G D AVL L +DLNT A Sbjct: 316 LQTQYRQPIDFTFKSLAEGEKQLTRWADLLKKHDVTAQENGTPDEAVLEGLKDDLNTPRA 375 Query: 365 IQALHKLAREST-KNHDLLPIFNASAHILGIEVC-------KEHLNKNISIA----IEKL 412 ALHKLAR++ + D S LG ++ +E ++S +E+L Sbjct: 376 FAALHKLARDARGGDADAAQKLANSIKFLGFDLESFSKAQSEEKAEADVSPELKAKVEEL 435 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +RL K+K F+ +D IR +L + G +L+D KN + G+ T W Sbjct: 436 IAKRLEARKVKDFAESDRIRDELAADGIVLKDMKNKETGEIETTW 480 >gi|261393406|emb|CAX51042.1| cysteinyl-tRNA synthetase (cysteine--tRNA ligase; CysRS) [Neisseria meningitidis 8013] Length = 473 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 190/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 348 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K N L A I+G+ Sbjct: 349 PSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|325129292|gb|EGC52130.1| cysteinyl-tRNA synthetase [Neisseria meningitidis OX99.30304] gi|325135312|gb|EGC57933.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M0579] gi|325201281|gb|ADY96735.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M01-240149] Length = 473 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 349 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 394 --IEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPIEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|325143495|gb|EGC65816.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M01-240013] Length = 473 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAAFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 S + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGSAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|206978367|ref|ZP_03239240.1| cysteinyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217957665|ref|YP_002336209.1| cysteinyl-tRNA synthetase [Bacillus cereus AH187] gi|222093860|ref|YP_002527910.1| cysteinyl-tRNA synthetase [Bacillus cereus Q1] gi|226735048|sp|B7HQS4|SYC_BACC7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765178|sp|B9IZH4|SYC_BACCQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206743428|gb|EDZ54862.1| cysteinyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217066370|gb|ACJ80620.1| cysteinyl-tRNA synthetase [Bacillus cereus AH187] gi|221237908|gb|ACM10618.1| cysteinyl-tRNA synthetase [Bacillus cereus Q1] Length = 465 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLRSTNNGLERIKTAYGNLKHRMESSTDLTDHDEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLKKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIQAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|282850303|ref|ZP_06259682.1| cysteine--tRNA ligase [Veillonella parvula ATCC 17745] gi|294793811|ref|ZP_06758948.1| cysteine--tRNA ligase [Veillonella sp. 3_1_44] gi|282579796|gb|EFB85200.1| cysteine--tRNA ligase [Veillonella parvula ATCC 17745] gi|294455381|gb|EFG23753.1| cysteine--tRNA ligase [Veillonella sp. 3_1_44] Length = 482 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 245/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E + I ++ + + L Sbjct: 62 K--VTYVQNFTDVDDKIINTSNGE------GVSWDTIANRYIDSYFEVMDALGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +IQ +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIDDIIAMIQTLIDKGYAYELDGDVYYSVEKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPAVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + + Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGSCDEAQRLL 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + A+ +D NT A ++ LA+E + ++ IF Sbjct: 347 EKAKAYEEEFEDAMSDDFNTALATSSMFGLAKEINIYYQAVTSREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G +E E + E+L+Q R + K+++ AD IR +L G Sbjct: 407 KFMTDVIGVLEKAWEGNTGANAAEYEELMQVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED + RWK++ Sbjct: 467 TIEDS------PQGARWKKR 480 >gi|294671003|ref|ZP_06735859.1| hypothetical protein NEIELOOT_02710 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307490|gb|EFE48733.1| hypothetical protein NEIELOOT_02710 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 473 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 187/492 (38%), Positives = 258/492 (52%), Gaps = 58/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 LTIYNTLTRKKEPFAPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+ Sbjct: 60 PLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 114 ATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGKRVEVDG 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FP Sbjct: 174 FKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITI 288 HHENEIAQS A W+HNGF+ ++G KMSKS GNF TI Sbjct: 234 HHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTI 293 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------- 338 E+L + + V+R +L HYR P++++ L +A+ L++ Sbjct: 294 REVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAA 346 Query: 339 -QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI- 394 + S + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 347 FELSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLL 406 Query: 395 -----EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 E + + + I+ L+ R K ++ +D IR L ILED Sbjct: 407 QRDPTEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN-- 464 Query: 448 PDNGQRMTRWKQ 459 T W++ Sbjct: 465 ----AGGTTWRR 472 >gi|328676393|gb|AEB27263.1| Cysteinyl-tRNA synthetase [Francisella cf. novicida Fx1] Length = 459 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 175/478 (36%), Positives = 249/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN ++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANGDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKKGEPAWNSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKV 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K ++ AD IR QL+ +G ILED T WK+ Sbjct: 407 DGADASEIEKLIAERTQAKKDKNYARADEIRNQLQQQGIILEDSAT------GTTWKK 458 >gi|319638892|ref|ZP_07993650.1| cysteinyl-tRNA synthetase [Neisseria mucosa C102] gi|317399796|gb|EFV80459.1| cysteinyl-tRNA synthetase [Neisseria mucosa C102] Length = 473 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFSPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGDLTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 349 LSENANDYTSRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDANLAGCLKALGGIIGLLQR 408 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|325263764|ref|ZP_08130497.1| cysteine--tRNA ligase [Clostridium sp. D5] gi|324030802|gb|EGB92084.1| cysteine--tRNA ligase [Clostridium sp. D5] Length = 468 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 180/491 (36%), Positives = 256/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ +F I+ +RMYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTLSKRKEDFVPIEEGKVRMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E ++ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEE------GVTADEVSKRYIAECKKDMEGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEICGMVDMIGTLIEKGYAYEKNGTVYYRTRKFKEYGKLSHKNLDDLQSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWESPWSEGRPGWHIECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FARYWMHNAFLNIDNRKMSKSLGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------- 348 + V+R ML HYR P++F+ + A+ L + + + + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSADLMDAAKTGLDRIITAADNLKFLKGNAKVQEMTSAEK 344 Query: 349 ----------PAVLSALYNDLNTVSAIQALHKLARESTKNH----------DLLPIFNAS 388 + A+ +D NT AI ++ +L + + DLL + Sbjct: 345 EAFTKTQEYIDSFERAMDDDFNTADAISSVFELVKYINTSADGESSAEYLQDLLDLLVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI V K+ + ++ IE L++ER K K F+ AD IR +L S+G +LED + Sbjct: 405 TDVLGIIVEKDE--EMLAEDIEALIEERQAARKAKNFARADEIRDELLSRGIVLEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKK 467 >gi|56708635|ref|YP_170531.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671107|ref|YP_667664.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|254371268|ref|ZP_04987270.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875501|ref|ZP_05248211.1| cysS, cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|61216126|sp|Q5NEL1|SYC_FRATT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123063359|sp|Q14G14|SYC_FRAT1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56605127|emb|CAG46249.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321440|emb|CAL09632.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|151569508|gb|EDN35162.1| hypothetical protein FTBG_01042 [Francisella tularensis subsp. tularensis FSC033] gi|254841500|gb|EET19936.1| cysS, cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159873|gb|ADA79264.1| Cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis NE061598] Length = 464 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 8 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 65 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 66 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 119 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN+++ + + +YG S++ ++ + G+RV K Sbjct: 120 ETIPEMVAMIETLIKKGYAYQGANSDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 179 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 180 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 239 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 240 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 291 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 292 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 351 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 352 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 411 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K + AD IR QL+ +G ILED T WK+ Sbjct: 412 DGADASEIEKLIAERTQAKKDKNYVRADEIRNQLQQQGIILEDSAT------GTTWKK 463 >gi|269798076|ref|YP_003311976.1| cysteinyl-tRNA synthetase [Veillonella parvula DSM 2008] gi|269094705|gb|ACZ24696.1| cysteinyl-tRNA synthetase [Veillonella parvula DSM 2008] Length = 482 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 247/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E + I ++ + + L Sbjct: 62 K--VTYVQNFTDVDDKIINTSNGE------GVSWDTIANRYIDSYFEVMDALGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +IQ +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIEDIITMIQTLIDKGYAYELDGDVYYSVEKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPSVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + + Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGACDEAQRLL 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + +A+ +D NT A ++ LA+E + ++ IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQAVTSREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G +E E + E+L+Q R + K+++ AD IR +L G Sbjct: 407 KFMTDVIGVLEKAWEGNTGANAAEYEELMQVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED + RWK++ Sbjct: 467 TIEDS------PQGARWKKR 480 >gi|224457829|ref|ZP_03666302.1| cysteinyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] Length = 459 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 251/478 (52%), Gaps = 47/478 (9%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 YN+L + +F+ I+ + I+MY CG TVYD HIG+AR I FDV+ R +Y + V Sbjct: 3 FYNSLSGQKEQFKPIEANKIKMYACGVTVYDDCHIGHARTYIAFDVINRYFKYRGYD--V 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 T VRNITDIDDKII+RA + ++ + + +N + RL L P+ +PRAT Sbjct: 61 TLVRNITDIDDKIIKRANEN------GESTTELVERNIKAMHDVFARLNILKPSKEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 IP+M+ +I+ +I G+AY+ AN+++ + + +YG S++ ++ + G+RV K Sbjct: 115 ETIPEMVAMIETLIKKGYAYQGANSDVFYRVTKFADYGKLSKQNLEALQQGSRVDVVEEK 174 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 +NP DF+LWK + EP W+SPWG GRPGWHIECSAMS LG FDIH GG DL FPHH Sbjct: 175 ENPMDFVLWKMAKEGEPAWDSPWGAGRPGWHIECSAMSKKLLGDTFDIHAGGSDLRFPHH 234 Query: 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP 305 ENEIAQS + AN W+H+G + + KMSKS NF TI E+LE + Sbjct: 235 ENEIAQSEACNEC-TFANYWLHSGMVKVNAEKMSKSLNNFFTIVEVLE-------EYHPE 286 Query: 306 VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPAVLSA 354 V+R + T YR I+++ + L A+ + + + + A Sbjct: 287 VVRYFLASTVYRSEINYSKENLENAKASVERLFNALRDIEPIEVNLPDDASEYEEKFIKA 346 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCK-----EHL 401 + ND NT A+ L LA+E K + +LGI + Sbjct: 347 MDNDFNTPEALAVLFSLAKEINTLKTTNKYKASGYAYLLRKLCDVLGILFTDIEEYFKQG 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IEKL+ ER K K + AD IR QL+ +G ILED T WK+ Sbjct: 407 DGADASEIEKLIAERTQAKKDKNYVRADEIRNQLQQQGIILEDSAT------GTTWKK 458 >gi|145298606|ref|YP_001141447.1| cysteinyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851378|gb|ABO89699.1| Cysteinyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] Length = 458 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 180/478 (37%), Positives = 252/478 (52%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + N +T + +D L + P +PR Sbjct: 61 -LNYVRNVTDVDDKIIKRAAE------TNVTCDDLTERLIGDMHQDFDALGMVRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++++I HAY A+ +++F S +YG S + +++ + G RV Sbjct: 114 ATQHISEIIELVESLIAQDHAYVADNGDVMFIVDSYADYGKLSGQDLEQLQAGARVGVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP WESPWG GRPGWHIECSAM+S +LG FDIHGGG DL FP Sbjct: 174 AKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGGD-YVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 A +R ++ HYR ++++ L +A L + + A + A+ Sbjct: 286 AESVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFVDAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIE------VCKEHL 401 +D NT A AL L RE + L +LGI K Sbjct: 346 DDDFNTPEAYSALFDLVREINRQKAEDMSVAAGLGARLRELGAVLGILQQDPDAFLKGDE 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+ ER K +++AD R +L G +LED T W++ Sbjct: 406 ADEEVAEIERLIAERNQARADKNWAAADAARARLTEMGIVLEDS------AGKTSWRR 457 >gi|15677904|ref|NP_275072.1| cysteinyl-tRNA synthetase [Neisseria meningitidis MC58] gi|30316184|sp|Q9JXE6|SYC_NEIMB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|7227346|gb|AAF42401.1| cysteinyl-tRNA synthetase [Neisseria meningitidis MC58] gi|325139404|gb|EGC61944.1| cysteinyl-tRNA synthetase [Neisseria meningitidis CU385] gi|325201129|gb|ADY96584.1| cysteinyl-tRNA synthetase [Neisseria meningitidis H44/76] Length = 473 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 348 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 349 PSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGRLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|89093601|ref|ZP_01166548.1| Cysteinyl-tRNA synthetase, class Ia [Oceanospirillum sp. MED92] gi|89081997|gb|EAR61222.1| Cysteinyl-tRNA synthetase, class Ia [Oceanospirillum sp. MED92] Length = 461 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 180/474 (37%), Positives = 254/474 (53%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL ++ + F I+ I+MYVCG TVYD HIG+AR M+ FDV+ R +R Sbjct: 2 LQIYNTLTKEKSPFTPIEEGKIKMYVCGVTVYDLCHIGHARVMVAFDVITRFMRSQG--W 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII+RA + + +T + +D RL+ L PT +PR Sbjct: 60 DVDYVRNITDVDDKIIKRAAEN------GEEPHELTERMIAAMHEDEARLSVLRPTQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I L++ +I G AY A N ++ + +YG + + +DE K G R+ + Sbjct: 114 ATAHIGDIISLVETLIEKGFAYPAANGDVYYRVEKFADYGKLTNKNVDELKTGARIEVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + E W+SPWG+GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 AKESPLDFVLWKSAKEGEVSWDSPWGKGRPGWHIECSAMSKCCLGNTFDIHGGGPDLPFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H G + + KMSKS GNF TI ++LE + Sbjct: 234 HHENEIAQSEAANGC-TYVNTWMHAGPVRVNSEKMSKSLGNFFTIRDVLE-------KYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------KGIIDPAVLSAL 355 A V+R + HYR ID++ L EA ++L ++ Q + + ++A+ Sbjct: 286 AEVVRFFLARVHYRTYIDYSEDSLKEARVMLERFYQALRGVDAVEGPLENDFEERFIAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGI--EVCKEHLNKNI 405 +D NT A+ + +L E K L +LG+ + E L Sbjct: 346 NDDFNTPKAVSVMFELVNELNKATREGASEAPALAAQLRKLGGMLGLLQQNADEFLQGES 405 Query: 406 S------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L+ +R K K F+ AD IR L S+G IL+D + + R Sbjct: 406 EEGGLSNEEIEQLIVDRAEAKKAKNFAEADKIRDDLASQGIILKDSREGTSWFR 459 >gi|261379506|ref|ZP_05984079.1| cysteine--tRNA ligase [Neisseria subflava NJ9703] gi|284797969|gb|EFC53316.1| cysteine--tRNA ligase [Neisseria subflava NJ9703] Length = 473 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFTPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKVGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 408 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|146310641|ref|YP_001175715.1| cysteinyl-tRNA synthetase [Enterobacter sp. 638] gi|145317517|gb|ABP59664.1| cysteinyl-tRNA synthetase [Enterobacter sp. 638] Length = 465 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 176/487 (36%), Positives = 255/487 (52%), Gaps = 49/487 (10%) Query: 1 MKK-KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 M+ +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 1 MESLMLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVSRYLRF 60 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + YVRNITDIDDKII+RA + ++ + + + KD L L P Sbjct: 61 LGY--TLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRP 112 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 +PRAT+HI ++I + + +I GHAY A N +++F + P YG SR+ +++ + G R Sbjct: 113 DSEPRATHHIHEIIEITEKLIERGHAYVASNGDVMFSVPTDPGYGQLSRQDLEQLQAGAR 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG Sbjct: 173 VDVVDVKRNPMDFVLWKTSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGS 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS CA E N W+H+G + ++ KMSKS NF T+ ++L Sbjct: 233 DLMFPHHENEIAQSTCAHGGE-YVNYWMHSGMVMVDREKMSKSLDNFFTVRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDP 349 + + A +R ++ HYR ++++ + L +A L + + Sbjct: 286 -KYYDAETVRYFLMSGHYRSQLNYSEENLKQARSALERLYIAVRGTDKSVAPAGGEAFEA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL 401 + + +D NT A L +ARE + + L A +LG+ Sbjct: 345 RFIDVMNDDFNTPEAYSVLFDMAREINRLKVEDVSAANALASHLRKLAAVLGLLEQDPET 404 Query: 402 --------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + IE L+ RL + K +++AD R +L G +LED G + Sbjct: 405 FLQSGAQNDGDEVAKIEALITARLEARQAKDWAAADAARNRLTEMGIVLED------GPQ 458 Query: 454 MTRWKQK 460 T W++K Sbjct: 459 GTIWRRK 465 >gi|330445515|ref|ZP_08309167.1| cysteinyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489706|dbj|GAA03664.1| cysteinyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 460 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 180/481 (37%), Positives = 257/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEAFTPIQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGEMHADFDALGMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A N +++F+ S +YG S++ +D+ + G RV + Sbjct: 114 ATQFIAEIIALCERLIERGFAYVASNGDVMFEVSKFEDYGRLSKQDLDQLQAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTSLRGLDTSVEAAGGEEFVARFKEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE K D+ A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKADDVAAASVLGARMRELADVLGLLSQEPETFLQGG 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+Q+RL K +++AD R +L + G ILED G + T W++ Sbjct: 406 AGEDDDVAEIEALIQQRLDARAAKDWAAADEARDKLMAMGIILED------GAQGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|309379306|emb|CBX22079.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 483 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 188/489 (38%), Positives = 257/489 (52%), Gaps = 58/489 (11%) Query: 8 YNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVT 67 YNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +T Sbjct: 15 YNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PLT 72 Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127 YVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 73 YVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKATE 126 Query: 128 HIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K+ Sbjct: 127 NIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKR 186 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FPHHE Sbjct: 187 DPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGNTFDIHGGGADLQFPHHE 246 Query: 247 NEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 NEIAQS A W+HNGF+ ++G KMSKS GNF TI E+ Sbjct: 247 NEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREV 306 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA- 350 L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 307 L-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPMP 359 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI---- 394 A+ +D +TV A+ L +LA E K N L A I+G+ Sbjct: 360 SEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQLAGRLKALGGIIGLLQRD 419 Query: 395 --EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 E + + + I+ L+ R K ++ +D IR L ILED Sbjct: 420 PTEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDT----- 474 Query: 451 GQRMTRWKQ 459 T W++ Sbjct: 475 -AGGTTWRR 482 >gi|156934911|ref|YP_001438827.1| hypothetical protein ESA_02760 [Cronobacter sakazakii ATCC BAA-894] gi|156533165|gb|ABU77991.1| hypothetical protein ESA_02760 [Cronobacter sakazakii ATCC BAA-894] Length = 479 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R I FDV+ R LR+ + Sbjct: 20 LKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFLGYK- 78 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + + + + KD L L P +PR Sbjct: 79 -LKYVRNITDIDDKIIKRANEN------GEDFVALVDRMVTEMHKDFDALNILRPDSEPR 131 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A N +++F S +YG SR+ +++ + G RV Sbjct: 132 ATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVAD 191 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 192 SKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 251 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 252 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------QHYD 303 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + + A Sbjct: 304 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATVAGGEAFEARFVEA 363 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L A +LG+ + Sbjct: 364 MNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSG 423 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ +RL K K +++AD R +L G ILED G + T W+ Sbjct: 424 AQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILED------GPQGTTWR 477 Query: 459 QK 460 +K Sbjct: 478 RK 479 >gi|118475860|ref|YP_893011.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|187629790|sp|A0R8G1|SYC_BACAH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|118415085|gb|ABK83504.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 173/489 (35%), Positives = 252/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I I ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIHELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|260892309|ref|YP_003238406.1| cysteinyl-tRNA synthetase [Ammonifex degensii KC4] gi|260864450|gb|ACX51556.1| cysteinyl-tRNA synthetase [Ammonifex degensii KC4] Length = 474 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 175/493 (35%), Positives = 255/493 (51%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL ++ F +P +RMYVCGPT Y++ H+GNAR ++VFD + R L Y Sbjct: 2 IEVYNTLTKRKEPFVPREPGRVRMYVCGPTTYNYIHLGNARALVVFDTIRRYLEYRGF-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII+RA +E + K + + +D ++ PR Sbjct: 60 RVFFVQNFTDIDDKIIKRAAEEK------MDPQELALKYIEAYFEDADQINIKRADVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++H+P+++ LI +I G AY A ++ F P YG S R++ E + G RV + Sbjct: 114 VSDHLPEIVELISILIDKGFAYAAEGDVYFAVRKFPAYGKLSGRQLSELRAGARVEPGEN 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P EP W SPWG GRPGWHIECSAM+ YLG FDIHGGG DLIFPH Sbjct: 174 KRDPLDFALWKKAKPGEPSWPSPWGEGRPGWHIECSAMALKYLGPEFDIHGGGSDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A A W+HNGF+ ++ KMSKS GN + +++E +P Sbjct: 234 HENEIAQSEAATG-RPFARYWLHNGFITVKEEKMSKSLGNVFLLRKVMEL-------YPP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTSK 344 P +RL +L THYR P+ +T + L A LS+ + Sbjct: 286 PAVRLFLLSTHYRSPLAYTPEYLEGAAKALSRLRSSWLFLQEAQKQAEESSGGTEQLARL 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI---------------FNASA 389 + +A+ +D NT A+ LA E +L P+ FN Sbjct: 346 DKWEQDFTAAMDDDFNTARALALFFDLAHEINSWAELRPLPPAPVLRRALLLWVSFNRVL 405 Query: 390 HIL----GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + G+ V ++ + ++ LV+ R + K +++AD IR+ L++ G +LED Sbjct: 406 GLFPERRGLPVVEQERTMVLEELVKLLVEIRQEARQRKDWATADRIRESLKNLGIVLEDT 465 Query: 446 KNPDNGQRMTRWK 458 TRW+ Sbjct: 466 ------PAGTRWR 472 >gi|187631664|sp|A4W7I4|SYC_ENT38 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 175/482 (36%), Positives = 253/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVSRYLRFLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 60 TLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A N +++F + P YG SR+ +++ + G RV Sbjct: 114 ATHHIHEIIEITEKLIERGHAYVASNGDVMFSVPTDPGYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKTSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHGGE-YVNYWMHSGMVMVDREKMSKSLDNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYIAVRGTDKSVAPAGGEAFEARFIDV 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A +LG+ Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKVEDVSAANALASHLRKLAAVLGLLEQDPETFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+ RL + K +++AD R +L G +LED G + T W+ Sbjct: 406 AQNDGDEVAKIEALITARLEARQAKDWAAADAARNRLTEMGIVLED------GPQGTIWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|261364077|ref|ZP_05976960.1| cysteine--tRNA ligase [Neisseria mucosa ATCC 25996] gi|288568121|gb|EFC89681.1| cysteine--tRNA ligase [Neisseria mucosa ATCC 25996] Length = 473 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 186/490 (37%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFTPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAAFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 S + +A+ +D TV A+ L +LA E K +D L I+G+ Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKVLGGIIGLLQR 408 Query: 395 ---EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + I+ L+ +R K ++ +D IR L ILED + Sbjct: 409 DPTEFLQGGAVSDGLSNEEIDDLIAQRKQARADKNWAESDRIRNLLNEHKIILEDNAD-- 466 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 467 ----GTTWRR 472 >gi|254671915|emb|CBA04234.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha275] gi|325131324|gb|EGC54035.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M6190] gi|325133259|gb|EGC55925.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M13399] gi|325137353|gb|EGC59941.1| cysteinyl-tRNA synthetase [Neisseria meningitidis ES14902] gi|325141357|gb|EGC63840.1| cysteinyl-tRNA synthetase [Neisseria meningitidis 961-5945] gi|325199172|gb|ADY94628.1| cysteinyl-tRNA synthetase [Neisseria meningitidis G2136] Length = 473 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 189/490 (38%), Positives = 258/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 +L + + V+R +L HYR P++++ L +A+ L++ T + DP Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPPADPM 348 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 A+ +D +TV A+ L +LA E K +D L A I+G+ Sbjct: 349 PSEADDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|326937883|gb|AEA13779.1| cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis CT-43] Length = 465 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKDAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 NPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 AELEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|253732537|ref|ZP_04866702.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|253729466|gb|EES98195.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|329731981|gb|EGG68337.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193] Length = 466 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+ ++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKELVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|218703810|ref|YP_002411329.1| cysteinyl-tRNA synthetase [Escherichia coli UMN026] gi|293403647|ref|ZP_06647738.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1412] gi|298379257|ref|ZP_06989138.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1302] gi|300897246|ref|ZP_07115688.1| cysteinyl-tRNA synthetase [Escherichia coli MS 198-1] gi|226735058|sp|B7N980|SYC_ECOLU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218430907|emb|CAR11781.1| cysteinyl-tRNA synthetase [Escherichia coli UMN026] gi|291429500|gb|EFF02520.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1412] gi|298280370|gb|EFI21874.1| cysteinyl-tRNA synthetase [Escherichia coli FVEC1302] gi|300358974|gb|EFJ74844.1| cysteinyl-tRNA synthetase [Escherichia coli MS 198-1] Length = 461 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGPGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSSVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|325206985|gb|ADZ02438.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M04-240196] Length = 473 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAAFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 S + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|225568316|ref|ZP_03777341.1| hypothetical protein CLOHYLEM_04391 [Clostridium hylemonae DSM 15053] gi|225162845|gb|EEG75464.1| hypothetical protein CLOHYLEM_04391 [Clostridium hylemonae DSM 15053] Length = 468 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 183/491 (37%), Positives = 252/491 (51%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLFNTLTRKKEEFVPVEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVSADEISKRYIKECKKDMEGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +I ++I G+AYE N + F T S +YG S + +D+ + G R V Sbjct: 113 ATEEICGMVEMIGSLIEKGYAYEKNGTVYFRTRSFKDYGKLSHKNLDDLRTGERSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWDSPWSDGRPGWHIECSVMSRKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNHKMSKSLGNFRTVREISE-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------------P 338 + V+R ML HYR P++F+ + + L + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSADLMEASRNGLERIVNAAGNLKFLMGSAKSEEMTAQER 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 + +A+ +D NT A+ A+ +L + D LL Sbjct: 345 EAFAGSEEFVKGFEAAMDDDFNTADAVAAVFELVKYINTTADAHSSRAYLQALLSRLVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG+ V K+ + IEKL+ ER K K F+ AD IR L KG ILED + Sbjct: 405 TDVLGLIVDKKE--DMLEEEIEKLIAERQAARKEKNFARADEIRGTLLEKGIILEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKK 467 >gi|160893352|ref|ZP_02074139.1| hypothetical protein CLOL250_00902 [Clostridium sp. L2-50] gi|156865044|gb|EDO58475.1| hypothetical protein CLOL250_00902 [Clostridium sp. L2-50] Length = 468 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 192/491 (39%), Positives = 254/491 (51%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R EF I+ + +YVCGPTVYD+ HIGNARPMIVFD L R L Y + Sbjct: 1 MKIFNTLTRTKEEFVPINEGKVGIYVCGPTVYDYIHIGNARPMIVFDTLRRYLTYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E +I+ + + KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANEE------GVDSKVISERFIAETKKDMAAMNVQEATTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT IP MI +I+ +I GHAYE N + F T S +YG S + ID+ + G R Sbjct: 113 ATEEIPDMIEMIKTLIEKGHAYEVNGTVYFRTRSFADYGKLSHKNIDDLESGHRAENHQL 172 Query: 182 ----KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF+LWK EP WESPWG GRPGWH+ECS MS Y+G + DIH GG Sbjct: 173 KVSGQDEKEDPLDFVLWKPKKEGEPFWESPWGEGRPGWHLECSVMSKKYIGDIIDIHAGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENEIAQS A+ E A W+HNGFL + KMSKS GNF T+ E+ + Sbjct: 233 EDLIFPHHENEIAQSEAANDKE-FARYWMHNGFLKINNEKMSKSLGNFFTVREIAD---- 287 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------- 350 +P VIR ML HYR P++F+ + ++ L + + PA Sbjct: 288 ---KYPLQVIRFFMLSAHYRSPLNFSADLVEASKNGLERILTAVDKLKSLAPADVEGSDV 344 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 +A+ +DLNT AI + +L + + N + Sbjct: 345 SVEAELDGYTKRFETAMDDDLNTADAISVIFELVKYTNINISNDTPKKTVDLAIRTIEKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 ILGI +E + + IE L+ ER K K F+ AD IR L KG ILED + Sbjct: 405 CDILGIITEREE--ELLDSDIEALINERQEARKAKNFARADEIRNMLSDKGIILEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKR 467 >gi|327399102|ref|YP_004339971.1| cysteinyl-tRNA synthetase [Hippea maritima DSM 10411] gi|327181731|gb|AEA33912.1| cysteinyl-tRNA synthetase [Hippea maritima DSM 10411] Length = 474 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 189/494 (38%), Positives = 262/494 (53%), Gaps = 60/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +++ EF+ I + MYVCG TVYD HIG+AR + FDV+YR L++ + Sbjct: 2 LKIYNTLGKRLEEFKPIKNGKVGMYVCGVTVYDNCHIGHARSAVAFDVMYRYLKFKGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII RA +E + + I + ++ KD RL P +P+ Sbjct: 61 -VTFVKNFTDVDDKIINRANEE------GVSCNEIAQRYIGEYYKDMYRLNIAKPEVEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI ++I L++ + G+AYE N ++ + +YG S + IDE K G RV Sbjct: 114 ATEHINEIIELVRKLQDMGYAYEVNGDVYYRVEKFKDYGKLSGKNIDELKSGARVEINDK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWKRS EP W+SPWG GRPGWHIECSAMS YLG+ FDIHGGG DLIFPH Sbjct: 174 KENPLDFALWKRSKENEPKWKSPWGEGRPGWHIECSAMSMKYLGESFDIHGGGEDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + A WIHNGF+ + KMSKS GNF TI ++L + + Sbjct: 234 HENEIAQSEAATG-KPFARYWIHNGFVRINKEKMSKSLGNFFTIKDIL-------KKYDG 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------------- 348 +R +L+THYR PIDF+ + L A+ L+++ + Sbjct: 286 QTLRYFLLLTHYRSPIDFSFEGLDAAKEALNRYYNFIQRLEDTEFEKNGKVDELLEKRLK 345 Query: 349 ---PAVLSALYNDLNTVSAIQALHKLARESTKNHD---------------LLPIFNASAH 390 A+ D N AI + + + + D L N Sbjct: 346 DLLARFEEAMDEDFNAPKAIGEVFSVIKTFNQYLDSITEGDKPKKAYKETFLESMNKIKS 405 Query: 391 ILGIEV---CKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 +LG+ + + I + +E+ +++R + K K + +AD IR +L KG ILED K Sbjct: 406 VLGVFDTSSASWFIPEGIDVDWVEERIKQRALARKNKDYETADKIRDELNGKGIILEDAK 465 Query: 447 NPDNGQRMTRWKQK 460 TRWK K Sbjct: 466 ------EYTRWKVK 473 >gi|170767865|ref|ZP_02902318.1| cysteinyl tRNA synthetase [Escherichia albertii TW07627] gi|170123353|gb|EDS92284.1| cysteinyl tRNA synthetase [Escherichia albertii TW07627] Length = 461 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVERMIAEMHKDFDALNIQRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLASVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|283834167|ref|ZP_06353908.1| cysteine--tRNA ligase [Citrobacter youngae ATCC 29220] gi|291070317|gb|EFE08426.1| cysteine--tRNA ligase [Citrobacter youngae ATCC 29220] Length = 461 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHSDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMAAANGMASHLRKLSSVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|89100736|ref|ZP_01173591.1| cysteinyl-tRNA synthetase [Bacillus sp. NRRL B-14911] gi|89084553|gb|EAR63699.1| cysteinyl-tRNA synthetase [Bacillus sp. NRRL B-14911] Length = 465 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 249/487 (51%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNT+ R+ EF ++ ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IAIYNTMSRQKEEFIPLEEGKVKMYVCGPTVYNYIHIGNARPPIVFDTVRRYLEFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I A++ + + + I + + +D + L C PR Sbjct: 62 -VQYISNFTDVDDKLIRAAKE------LGEDVPSIAERFIDAYFEDVSALGCKRADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ +I G AYE+N ++ F T YG S++ IDE ++G R+ Sbjct: 115 VTESMDLIIQFIEALIEKGFAYESNGDVYFHTRRFDEYGKLSQQSIDELRVGARIAVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KQDALDFALWKTAKEGEISWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLSFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N+ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 V+R ML HYR PI+++ + L L + + + Sbjct: 287 QVLRFFMLSVHYRHPINYSDELLENTRSGLERITTSYQNLAHRKEASAELTDNNSEWLKK 346 Query: 346 --IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHIL 392 + + + +D NT + I L +L+R++ + F +L Sbjct: 347 IEDLHGEFIKEMDDDFNTANGISVLFELSRQANYYLLEKNTSVEVIEAFMKEFEILFDVL 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + E L + I+ L+++R K + F +D IR QL+ ILED Sbjct: 407 GLSLGGEEL---LDDEIDALIEKRNQARKERNFQLSDQIRDQLKEMNIILEDT------A 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|144897394|emb|CAM74258.1| Cysteinyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1] Length = 459 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 225/478 (47%), Positives = 280/478 (58%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ FQ + P ++ MYVCGPTVYD AHIGNARP+IVFDVLYRLL Y Sbjct: 3 LVLYNTLTRRKEAFQPLSPDHVGMYVCGPTVYDRAHIGNARPVIVFDVLYRLLSRLY--P 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI +R++ + I++IT++ TQ F D L L PT +PR Sbjct: 61 SVTYVRNITDVDDKINQRSKDS------GEPIAVITARTTQMFHDDIAELNALPPTIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI QMI +IQ +I GHAY A ++F+ S+ +YG SRR +DE G RV + Sbjct: 115 ATAHIQQMIDMIQVLIAKGHAYAAEGHVLFEVGSMADYGQLSRRSMDEMIAGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKN DF+LWK STP PGW+SPWGRGRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 175 KKNAGDFVLWKPSTPDLPGWDSPWGRGRPGWHIECSAMSGQYLGQTFDIHGGGQDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA+ A W+HNG+L +EG KMSKS GNF T+ ELLE P Sbjct: 235 HENEIAQSQCANGA-PFARYWLHNGYLMVEGEKMSKSLGNFFTVRELLEAA-------PG 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------IIDPAVLSALYN 357 IRL ML THY +P D+T + L +A L + + AV +AL + Sbjct: 287 EAIRLCMLSTHYHQPFDWTAEGLKQARATLDRLYNALRGTADAGTEAVDLPLAVQAALED 346 Query: 358 DLNTVSAIQALHKLARESTKNHDLLP------IFNASAHILGIEVCKEHL---------- 401 DLNT AI LH+LA K A+ LG+ + + Sbjct: 347 DLNTPLAISHLHELAGALNKAESAADKARARGALLAAGQALGVLLQDPEVWFRWQSAGAD 406 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+Q RL K K F+ AD IRK+L G +LED G + T WK+ Sbjct: 407 SGPDEAGIESLIQARLEARKAKNFAEADRIRKELADSGVVLED------GPQGTTWKR 458 >gi|326795514|ref|YP_004313334.1| cysteinyl-tRNA synthetase [Marinomonas mediterranea MMB-1] gi|326546278|gb|ADZ91498.1| cysteinyl-tRNA synthetase [Marinomonas mediterranea MMB-1] Length = 461 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 184/482 (38%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL + EF+ I I MYVCG TVYDF HIG+AR MI FDV+ R+LR+ + Sbjct: 2 LRIYNTLTGQKEEFKPIVEGKIGMYVCGNTVYDFCHIGHARAMISFDVISRILRHL--DY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + S +T + + +D L L P +P+ Sbjct: 60 DLTYVRNITDVDDKIIKRAAEN------GELPSDLTERMIEAQQEDEKALGNLPPDREPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I +I+ ++ G AY+++ ++ + S +YG + RK++E G RV Sbjct: 114 ATEFMQEIINMIKTLVDKGFAYQSDSGDVFYRASRFTDYGKLNNRKLEEMLAGARVEVTE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK E W+SPWG+GRPGWHIECSAMS++ LG FDIHGGG DL FP Sbjct: 174 SKEHPADFVLWKPVKEGEVHWDSPWGKGRPGWHIECSAMSTNCLGDHFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+H G + + KMSKS GNF TI E+L + + Sbjct: 234 HHENEIAQSEAATG-KDYVNYWMHCGAVRVNNEKMSKSLGNFFTIREVL-------KLYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--------GIIDPAVLSAL 355 V+R M+ +HYR PID++ Q L +A++ L + + +AL Sbjct: 286 PEVLRYLMVSSHYRSPIDYSDQSLNDAKVALERLYNALRDQSCSEIPESSDYRTRFTAAL 345 Query: 356 YNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKE-------- 399 +D NT A+ L L R+ K L A +LG+ Sbjct: 346 NDDFNTPVALSVLFDLVRDLNKAKTESAELAETLAAELTNLASVLGLLYQDADYFLKNGT 405 Query: 400 -HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IEKL++ER K K FS +D IR L KG L D + T W Sbjct: 406 FDAEGISADDIEKLIEERKQARKDKNFSRSDEIRDLLAEKGIELLDSR------EGTSWT 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|288959132|ref|YP_003449473.1| cysteinyl-tRNA synthetase [Azospirillum sp. B510] gi|288911440|dbj|BAI72929.1| cysteinyl-tRNA synthetase [Azospirillum sp. B510] Length = 458 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 213/478 (44%), Positives = 285/478 (59%), Gaps = 42/478 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F+ + P ++ MYVCGPTVYD AHIGNARP++VFD+L+RLL Y Sbjct: 1 MPLDLYNTLTRRKERFEPLRPDHVGMYVCGPTVYDTAHIGNARPVVVFDLLFRLLSRLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKII+RAR + I +T++ T F D L L PT + Sbjct: 60 -PAVTYVRNITDVDDKIIDRARDS------GEPIDALTARTTDLFHADMDALNALRPTIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI QMI LI +I G+AY A ++F S+P+YG SRR +++ G RV Sbjct: 113 PRATQHIGQMIALIATLIERGNAYAAEGHVLFSVPSMPSYGQLSRRSLEDMIAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++ +DF+LWK S+P +PGW+SPWGRGRPGWHIECSAM+ +LG FDIHGGGLDLIF Sbjct: 173 PYKRDASDFVLWKPSSPDQPGWDSPWGRGRPGWHIECSAMAKEHLGVTFDIHGGGLDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA+ ++ A W+HNGF+ +EG KMSKS GNF T+++LL+ + Sbjct: 233 PHHENEIAQSCCANGTDRLARTWVHNGFVTVEGEKMSKSLGNFFTVHDLLD-------EF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-----GIIDPAVLSALYN 357 P IRL +L HYR+P+DFT + + +A+ L +W Q + VL+AL + Sbjct: 286 PGEAIRLTLLSAHYRQPLDFTREGIRQAKGALDRWYQALRGDPAPAAAAVPFDVLAALED 345 Query: 358 DLNTVSAIQALHKLARESTKNHDLLP------IFNASAHILGIEVCKEHL---------- 401 DLN+ AI LH+LA K A+ LG+ Sbjct: 346 DLNSPLAIAHLHELATAVNKARSDAEKAAAKGALLAAGQQLGLLRQDPEAWFRWAPTGGV 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +E+L+ +R K F+ AD IRK+L KG +LED G + T WK+ Sbjct: 406 EGLSDAEVERLIIDRKTARAAKNFAEADRIRKELADKGIVLED------GPQGTSWKR 457 >gi|57651406|ref|YP_185462.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87160084|ref|YP_493218.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194292|ref|YP_499084.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220704|ref|YP_001331526.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|262049572|ref|ZP_06022441.1| cysteinyl-tRNA synthetase [Staphylococcus aureus D30] gi|262052418|ref|ZP_06024618.1| cysteinyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|284023539|ref|ZP_06377937.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132] gi|294850305|ref|ZP_06791039.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9754] gi|61216110|sp|Q5HIE5|SYC_STAAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894946|sp|Q2FJB0|SYC_STAA3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123291881|sp|Q2G2M6|SYC_STAA8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|172048774|sp|A6QEI2|SYC_STAAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631648|sp|A8YZM7|SYC_STAAT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57285592|gb|AAW37686.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87126058|gb|ABD20572.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201850|gb|ABD29660.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373504|dbj|BAF66764.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|259159664|gb|EEW44708.1| cysteinyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|259162312|gb|EEW46885.1| cysteinyl-tRNA synthetase [Staphylococcus aureus D30] gi|294822817|gb|EFG39252.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9754] gi|302332243|gb|ADL22436.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JKD6159] gi|315196659|gb|EFU27006.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01] gi|320141606|gb|EFW33445.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320141766|gb|EFW33594.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329731047|gb|EGG67420.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189] Length = 466 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|168181842|ref|ZP_02616506.1| cysteine--tRNA ligase [Clostridium botulinum Bf] gi|237796964|ref|YP_002864516.1| cysteinyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657] gi|259511826|sp|C3KVS3|SYC_CLOB6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|182674897|gb|EDT86858.1| cysteine--tRNA ligase [Clostridium botulinum Bf] gi|229261308|gb|ACQ52341.1| cysteine--tRNA ligase [Clostridium botulinum Ba4 str. 657] Length = 465 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 173/488 (35%), Positives = 255/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLPLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKKANEE------GTTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMKEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPEEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEGLRDEELKYR 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 + + +D NT AI + L R+ N L + Sbjct: 345 DELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNITIESSKELVKYALDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ ++ IE+L+QER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQKSTKASLEEEIERLIQERQKARKEKDWALADKIRDDLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|221141034|ref|ZP_03565527.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302750421|gb|ADL64598.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 466 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|331268391|ref|YP_004394883.1| cysteinyl-tRNA synthetase [Clostridium botulinum BKT015925] gi|329124941|gb|AEB74886.1| cysteinyl-tRNA synthetase [Clostridium botulinum BKT015925] Length = 472 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 165/489 (33%), Positives = 260/489 (53%), Gaps = 53/489 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K+K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y Sbjct: 5 NKMKLFNTMTRQKEEFKPIKDGEVNMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYKGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +++N TDIDDK+I++A +E N + + + +++ KD+ L T Sbjct: 65 K--VNFIQNFTDIDDKMIKKANEE------NITVKELGDRFIEEYYKDSDGLNIKRATVN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT + +++ ++++I G+AY+ + ++ F T YG S + +++ + G R+ Sbjct: 117 PRATEFMDEIVAFVKDLIDKGYAYKVDGDVYFSTKKFTEYGKLSGQNLEDLQAGARITVD 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF +WK P EP WESPWG+GRPGWHIECS M+ LG DIH GG DL+F Sbjct: 177 ERKQDPMDFAIWKNEKPGEPSWESPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + + AN W+H+ +LN+ +KMSKS NF T E+LE + Sbjct: 237 PHHENEIAQSEARNG-KAFANYWMHSAYLNINNKKMSKSLNNFFTTREILER-------Y 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV----------- 351 A VIRL ML HYR P++F+ + L A+ + + + + V Sbjct: 289 DAEVIRLFMLSAHYRTPLNFSDELLESAKASNERLYNSIGNLERLLDEVKIEKMTEDEKE 348 Query: 352 ------------LSALYNDLNTVSAIQALHKLAREST---KNHDLLPIFNASAHI---LG 393 + + +D NT AI + L +E + N S I LG Sbjct: 349 YTKVLNSYKEKYIEKMDDDFNTADAIAVIFDLIKEINTHVNADSSKELVNYSLEIIRELG 408 Query: 394 --IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 + + ++ +++ IE L+++R K + ++ AD IR L+++G +LED Sbjct: 409 MPLGILQKSTMLDLNAEIEGLIEQRQQARKDRNWALADKIRDDLKARGIVLEDT------ 462 Query: 452 QRMTRWKQK 460 + RWK++ Sbjct: 463 PQGVRWKKE 471 >gi|187608842|sp|A7MK00|SYC_ENTS8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R I FDV+ R LR+ + Sbjct: 2 LKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GEDFVALVDRMVTEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A N +++F S +YG SR+ +++ + G RV Sbjct: 114 ATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 SKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATVAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L A +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ +RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|170683319|ref|YP_001742670.1| cysteinyl-tRNA synthetase [Escherichia coli SMS-3-5] gi|331645713|ref|ZP_08346816.1| cysteine--tRNA ligase [Escherichia coli M605] gi|226735059|sp|B1LKE5|SYC_ECOSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|170521037|gb|ACB19215.1| cysteinyl tRNA synthetase [Escherichia coli SMS-3-5] gi|222032317|emb|CAP75056.1| Cysteinyl-tRNA synthetase [Escherichia coli LF82] gi|281177699|dbj|BAI54029.1| cysteinyl-tRNA synthetase [Escherichia coli SE15] gi|312945102|gb|ADR25929.1| cysteinyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C] gi|330910316|gb|EGH38826.1| cysteinyl-tRNA synthetase [Escherichia coli AA86] gi|331044465|gb|EGI16592.1| cysteine--tRNA ligase [Escherichia coli M605] Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|21282214|ref|NP_645302.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49485394|ref|YP_042615.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208757|ref|ZP_06925185.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912847|ref|ZP_07130289.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] gi|24418688|sp|Q8NXY7|SYC_STAAW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56749395|sp|Q6GBV8|SYC_STAAS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21203650|dbj|BAB94350.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49243837|emb|CAG42262.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|296886702|gb|EFH25607.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885951|gb|EFK81154.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 466 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDRGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|258452738|ref|ZP_05700736.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5948] gi|282924443|ref|ZP_06332115.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9765] gi|257859611|gb|EEV82461.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5948] gi|282592854|gb|EFB97858.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9765] Length = 471 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 262/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 65 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 468 Query: 452 QRM 454 +R Sbjct: 469 KRG 471 >gi|218547963|ref|YP_002381754.1| cysteinyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] gi|226735060|sp|B7LJI4|SYC_ESCF3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218355504|emb|CAQ88115.1| cysteinyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] gi|324113037|gb|EGC07013.1| cysteinyl-tRNA synthetase [Escherichia fergusonii B253] Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMVAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|161508769|ref|YP_001574428.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|160367578|gb|ABX28549.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] Length = 476 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 262/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 10 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 69 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 70 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 122 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 181 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 182 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 241 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 242 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 293 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 294 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 353 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 354 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 413 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 414 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 473 Query: 452 QRM 454 +R Sbjct: 474 KRG 476 >gi|15800263|ref|NP_286275.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 EDL933] gi|15829842|ref|NP_308615.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|168747790|ref|ZP_02772812.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|168754640|ref|ZP_02779647.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|168768489|ref|ZP_02793496.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|168774602|ref|ZP_02799609.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|168779029|ref|ZP_02804036.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|168786387|ref|ZP_02811394.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC869] gi|195936093|ref|ZP_03081475.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi|208808572|ref|ZP_03250909.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208815777|ref|ZP_03256956.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208822926|ref|ZP_03263244.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209397071|ref|YP_002269179.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|217324178|ref|ZP_03440262.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254791714|ref|YP_003076551.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|261224014|ref|ZP_05938295.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000] gi|261257708|ref|ZP_05950241.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966] gi|291281437|ref|YP_003498255.1| Cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|21264001|sp|Q8XCT9|SYC_ECO57 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710840|sp|B5YPP1|SYC_ECO5E RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|12513423|gb|AAG54883.1|AE005233_9 cysteine tRNA synthetase [Escherichia coli O157:H7 str. EDL933] gi|13360046|dbj|BAB34011.1| cysteine tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|187769725|gb|EDU33569.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|188017727|gb|EDU55849.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|189003129|gb|EDU72115.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|189357976|gb|EDU76395.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|189362536|gb|EDU80955.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|189373672|gb|EDU92088.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC869] gi|208728373|gb|EDZ77974.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208732425|gb|EDZ81113.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208737119|gb|EDZ84803.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209158471|gb|ACI35904.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|209777878|gb|ACI87251.1| cysteine tRNA synthetase [Escherichia coli] gi|209777880|gb|ACI87252.1| cysteine tRNA synthetase [Escherichia coli] gi|209777882|gb|ACI87253.1| cysteine tRNA synthetase [Escherichia coli] gi|209777884|gb|ACI87254.1| cysteine tRNA synthetase [Escherichia coli] gi|209777886|gb|ACI87255.1| cysteine tRNA synthetase [Escherichia coli] gi|217320399|gb|EEC28823.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254591114|gb|ACT70475.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|290761310|gb|ADD55271.1| Cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|320192951|gb|EFW67591.1| Cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212] gi|320638305|gb|EFX08030.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101] gi|320643709|gb|EFX12839.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89] gi|320649025|gb|EFX17612.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687] gi|320654603|gb|EFX22608.1| cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660389|gb|EFX27860.1| cysteinyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905] gi|320665083|gb|EFX32180.1| cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61] gi|326341299|gb|EGD65091.1| Cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044] gi|326345924|gb|EGD69663.1| Cysteinyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125] Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKVEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|194432744|ref|ZP_03065029.1| cysteinyl tRNA synthetase [Shigella dysenteriae 1012] gi|194419006|gb|EDX35090.1| cysteinyl tRNA synthetase [Shigella dysenteriae 1012] Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHITEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|18311409|ref|NP_563343.1| cysteinyl-tRNA synthetase [Clostridium perfringens str. 13] gi|168214716|ref|ZP_02640341.1| cysteinyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] gi|168217920|ref|ZP_02643545.1| cysteinyl-tRNA synthetase [Clostridium perfringens NCTC 8239] gi|182626995|ref|ZP_02954725.1| cysteinyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|21264002|sp|Q8XHQ5|SYC_CLOPE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|18146093|dbj|BAB82133.1| cysteine-tRNA ligase [Clostridium perfringens str. 13] gi|170713805|gb|EDT25987.1| cysteinyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] gi|177907665|gb|EDT70289.1| cysteinyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|182380037|gb|EDT77516.1| cysteinyl-tRNA synthetase [Clostridium perfringens NCTC 8239] Length = 466 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 171/488 (35%), Positives = 245/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y + Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEE------GTTVKKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFEGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILER-------YDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIR ML HYR+ ++F+ L A+ + + + + V Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ N+ IE L+ +R K + F+ AD IR +L+ +G +LED Sbjct: 406 LG--MFQKSTKGNLEEEIEALIAKRQQARKDRDFALADKIRDELKDRGIVLEDT------ 457 Query: 452 QRMTRWKQ 459 + RWK Sbjct: 458 PQGVRWKM 465 >gi|256023857|ref|ZP_05437722.1| cysteinyl-tRNA synthetase [Escherichia sp. 4_1_40B] gi|301648555|ref|ZP_07248272.1| cysteinyl-tRNA synthetase [Escherichia coli MS 146-1] gi|307137169|ref|ZP_07496525.1| cysteinyl-tRNA synthetase [Escherichia coli H736] gi|331641048|ref|ZP_08342183.1| cysteine--tRNA ligase [Escherichia coli H736] gi|301073390|gb|EFK88196.1| cysteinyl-tRNA synthetase [Escherichia coli MS 146-1] gi|315616534|gb|EFU97151.1| cysteinyl-tRNA synthetase [Escherichia coli 3431] gi|323972179|gb|EGB67391.1| cysteinyl-tRNA synthetase [Escherichia coli TA007] gi|331037846|gb|EGI10066.1| cysteine--tRNA ligase [Escherichia coli H736] Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADGSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|237730496|ref|ZP_04560977.1| cysteinyl-tRNA synthetase [Citrobacter sp. 30_2] gi|226906035|gb|EEH91953.1| cysteinyl-tRNA synthetase [Citrobacter sp. 30_2] Length = 461 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHSDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMAAANGMAAHLRKLSSVLGLLEQDPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|238019166|ref|ZP_04599592.1| hypothetical protein VEIDISOL_01029 [Veillonella dispar ATCC 17748] gi|237863865|gb|EEP65155.1| hypothetical protein VEIDISOL_01029 [Veillonella dispar ATCC 17748] Length = 497 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 243/500 (48%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 17 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 76 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E + I ++ + + L Sbjct: 77 K--VTYVQNFTDVDDKIINTSNGE------GVSWDTIANRYIDSYFEVMDALGVQRADIY 128 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +I +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 129 PRVSTHIEDIIAMISTLIEKGYAYELDGDVYYSVDKFEHYGELSGRTLDDMEAGARIEVD 188 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 189 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 248 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 249 PHHENEIAQSEGCSGQHPSVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 301 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + Sbjct: 302 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGPCDEAQHLL 361 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + +A+ +D NT A ++ LA+E + ++ IF Sbjct: 362 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQTVTGREGVVCQEAIAEVKRIF 421 Query: 386 NASAHILGIEVCKEHLNKNI-SIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++GI N + E+L+Q R K+++ AD IR +L G Sbjct: 422 KFMTEVIGILEKAWEGNTGANAAEYEELMQVILSVRQACRDQKQWALADCIRDRLAEIGI 481 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED + RWK++ Sbjct: 482 TIEDS------PQGARWKKR 495 >gi|253731134|ref|ZP_04865299.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725099|gb|EES93828.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 466 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKIANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|229825688|ref|ZP_04451757.1| hypothetical protein GCWU000182_01051 [Abiotrophia defectiva ATCC 49176] gi|229790251|gb|EEP26365.1| hypothetical protein GCWU000182_01051 [Abiotrophia defectiva ATCC 49176] Length = 465 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 188/488 (38%), Positives = 261/488 (53%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF ++P ++MYVCGPTVY+F HIGNARP+I+FD + R Y + Sbjct: 1 MKIHNTLTNKEEEFIPLEPGKVKMYVCGPTVYNFMHIGNARPIIIFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E + + I+ + + D L L T P+ Sbjct: 60 -VNYVSNFTDVDDKIIKRANEE------GVSSTEISERYIIEAKTDMEGLNVLPATKNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I MI +I+ +I GHAY N + F T S YG S + ID+ + G R+ Sbjct: 113 ATEEIDGMIEMIEELIKKGHAYAKNGSVYFRTRSFEEYGKLSNKNIDDLEAGARIAVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK EP W SPWG GRPGWHIECS MS YLG+ DIH GG DLIFPH Sbjct: 173 KEDPLDFVLWKPKKEGEPFWVSPWGEGRPGWHIECSVMSKKYLGEQIDIHAGGEDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A W+HNG+L + KMSKS GNFITI ++ + + Sbjct: 233 HENEIAQSEAAN-DKDFAKYWMHNGYLRINNEKMSKSLGNFITIRDV-------SKEYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------TSTSKGII 347 V+R ML HYR PI+F+ + + A+ L + T K ++ Sbjct: 285 GVLRFFMLGAHYRGPINFSHELMEAAKTGLERITNAVANLDFLLESANDRSLTEAEKEVL 344 Query: 348 DPA------VLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 D A +A+ D NT A+ A+ L + + ++ + + + Sbjct: 345 DKALAYKADFEAAMDADFNTADAVTAVFNLVKLANSEINTESSSELIKEVRGLIVILSDV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG++V KE + + IE L++ER K K F+ AD IR+ L SKG +LED + Sbjct: 405 LGVKVVKEK--EILDEEIEALIKERTEARKSKNFARADEIREILTSKGIVLEDTR----- 457 Query: 452 QRMTRWKQ 459 +WK+ Sbjct: 458 -EGVKWKR 464 >gi|169344133|ref|ZP_02865116.1| cysteinyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] gi|169297744|gb|EDS79843.1| cysteinyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] Length = 466 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 172/488 (35%), Positives = 246/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y + Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEE------GTTVKKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFQGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILER-------YDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIR ML HYR+ ++F+ L A+ + + + + V Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI A+ L +++ N L + Sbjct: 346 ESLNQYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ N++ IE L+ +R K + F+ AD IR +L+ +G ILED Sbjct: 406 LG--MFQKSTKGNLAEEIEALIAKRQQARKDRDFALADKIRDELKDRGIILEDT------ 457 Query: 452 QRMTRWKQ 459 + RWK Sbjct: 458 PQGVRWKM 465 >gi|325127358|gb|EGC50293.1| cysteinyl-tRNA synthetase [Neisseria meningitidis N1568] Length = 473 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAAFD 348 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 S + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGSAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|94499488|ref|ZP_01306025.1| cysteinyl-tRNA synthetase [Oceanobacter sp. RED65] gi|94428242|gb|EAT13215.1| cysteinyl-tRNA synthetase [Oceanobacter sp. RED65] Length = 460 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 254/480 (52%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ + P I MYVCG TVYDF H+G+AR M+ FDV+ R LR+ + Sbjct: 3 LQIYNTLSRQKEEFKPLQPGKIGMYVCGMTVYDFCHMGHARVMVSFDVIVRYLRHKGFD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII+RA + + + + +D +L L P +PR Sbjct: 62 -VNYIRNITDIDDKIIQRAAEN------GEPFEQLVDRMVDAMNEDFAKLNILTPNSEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +I +++ +I G AY A N ++ + YG S + ++E + G R+ + Sbjct: 115 ATQHIDGIIKMVETLIEKGFAYAAKNGDVYYRVRKFDGYGKLSGKILEELESGARIAVEE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL FP Sbjct: 175 EKEDPLDFVLWKSAKPEEPSWDSPWGQGRPGWHIECSVMSTCCLGNNFDIHGGGPDLKFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A AN W+H G L ++G KMSKS GNF TI ++LE + Sbjct: 235 HHENEIAQSEAATGEH-YANTWMHAGALRIDGEKMSKSLGNFFTIRDILE-------KYD 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---TSKGIIDPA---------- 350 A VIR + YR I+++ L +AE L + +ID Sbjct: 287 AEVIRFFLSSVQYRSAINYSEDGLKDAEAKLDRLYNAIHGCDLSAVIDEQDAVVQDTRER 346 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVCK-----EH 400 +A+ +D NT AI L L E K L + + ILG + Sbjct: 347 FEAAMDDDFNTPKAIAVLFDLVNEINKKEGAEKNPLAALLVELSSILGCLQSDPDNYLQR 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 I+ +QER K K F+ AD IR+ L+++G IL+D + T W +K Sbjct: 407 GVTLDDAYIQGKIQERAQAKKDKDFALADKIREDLDAQGIILQDSR------EGTTWVKK 460 >gi|16759512|ref|NP_455129.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142716|ref|NP_806058.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414312|ref|YP_151387.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161615258|ref|YP_001589223.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168239036|ref|ZP_02664094.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240371|ref|ZP_02665303.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465640|ref|ZP_02699522.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442819|ref|YP_002039781.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451708|ref|YP_002044570.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734068|ref|YP_002113550.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197363232|ref|YP_002142869.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198241911|ref|YP_002214492.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389934|ref|ZP_03216545.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213162267|ref|ZP_03347977.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213423442|ref|ZP_03356426.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427916|ref|ZP_03360666.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586100|ref|ZP_03367926.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213617481|ref|ZP_03372307.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647061|ref|ZP_03377114.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289823986|ref|ZP_06543585.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21264006|sp|Q8Z8P6|SYC_SALTI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216133|sp|Q5PCE2|SYC_SALPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631630|sp|A9MW31|SYC_SALPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710850|sp|B5FLP7|SYC_SALDC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558785|sp|B4TA89|SYC_SALHS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558786|sp|B4SXP2|SYC_SALNS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558787|sp|B5BCZ8|SYC_SALPK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558788|sp|B4TN59|SYC_SALSV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|25293235|pir||AC0569 cysteinyl-tRNA synthetase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501804|emb|CAD05021.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138347|gb|AAO69918.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128569|gb|AAV78075.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161364622|gb|ABX68390.1| hypothetical protein SPAB_03027 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401482|gb|ACF61704.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410012|gb|ACF70231.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709570|gb|ACF88791.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631983|gb|EDX50503.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094709|emb|CAR60239.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288172|gb|EDY27557.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936427|gb|ACH73760.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602379|gb|EDZ00925.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339820|gb|EDZ26584.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|322614796|gb|EFY11725.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618903|gb|EFY15791.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623610|gb|EFY20449.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629091|gb|EFY25870.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631812|gb|EFY28566.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637451|gb|EFY34153.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642135|gb|EFY38745.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645840|gb|EFY42361.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649781|gb|EFY46206.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653205|gb|EFY49538.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660646|gb|EFY56882.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664798|gb|EFY60991.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669149|gb|EFY65299.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670695|gb|EFY66828.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679067|gb|EFY75122.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682094|gb|EFY78119.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685076|gb|EFY81073.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193031|gb|EFZ78254.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196887|gb|EFZ82029.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203872|gb|EFZ88889.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207042|gb|EFZ91995.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214431|gb|EFZ99182.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220129|gb|EGA04593.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226317|gb|EGA10529.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230246|gb|EGA14366.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233984|gb|EGA18073.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238322|gb|EGA22380.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244009|gb|EGA28018.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246597|gb|EGA30571.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252160|gb|EGA36017.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257792|gb|EGA41471.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261192|gb|EGA44784.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264876|gb|EGA48375.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272440|gb|EGA55847.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622240|gb|EGE28585.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 461 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|258544752|ref|ZP_05704986.1| cysteine--tRNA ligase [Cardiobacterium hominis ATCC 15826] gi|258520023|gb|EEV88882.1| cysteine--tRNA ligase [Cardiobacterium hominis ATCC 15826] Length = 473 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 176/464 (37%), Positives = 251/464 (54%), Gaps = 32/464 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YN+L R+ F +P I MYVCG TVYD+ HIG+AR M+VFD + R LR Sbjct: 24 LQFYNSLTRQKEAFIPREPGKIGMYVCGMTVYDYCHIGHARVMVVFDTIARHLRASGY-- 81 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII RA + + I +T++ +D L C P +PR Sbjct: 82 ALKYVRNITDIDDKIIARAHEN------GEPIDALTARFITAMHEDEAALGCQRPDVEPR 135 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + MI L+Q +I GHAY A+ ++ + S P YG + R +D+ + G R+ Sbjct: 136 ATAAVSGMIELVQTLIAKGHAYAADNGDVYYAVRSFPAYGKLANRSLDDLRAGERIAVNE 195 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP W+SPWG+GRPGWHIECS M + LG+ FDIHGGG+DL FP Sbjct: 196 AKKDPLDFVLWKAAKPGEPAWDSPWGKGRPGWHIECSVMGAETLGEHFDIHGGGMDLKFP 255 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE EIAQS A N WIHNGF+ ++ KMSKS GNF T+ ++L + + Sbjct: 256 HHECEIAQSEGACG-HPHVNYWIHNGFVQIDNEKMSKSLGNFFTVRDVL-------KKYD 307 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIID----PAVLSALY 356 +R +L +HYR P++++ L EA+ L++ + + G +D A A+ Sbjct: 308 GETLRAFILSSHYRGPLNYSDAALDEAKKALTRLYSALDKAPADGAMDADAVAAFDEAMN 367 Query: 357 NDLNTVSAIQALHKLARESTKNHD-LLPIFNASAHILGI------EVCKEHLNKNISIA- 408 +D NT A L LAR L + LG+ + K + ++S A Sbjct: 368 DDFNTPKAFAVLFDLARRLNSGETALAATLKTLSGRLGLLQQNPADWLKGENSGSLSEAD 427 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 I + R K ++ AD IR +L ++G I++D + Sbjct: 428 ILARIHARAEAKAAKDYARADAIRAELAAQGIIIKDTAGGVEWR 471 >gi|304381872|ref|ZP_07364519.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304339658|gb|EFM05605.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 466 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +D++ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDIVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|302039377|ref|YP_003799699.1| cysteinyl-tRNA synthetase [Candidatus Nitrospira defluvii] gi|300607441|emb|CBK43774.1| Cysteinyl-tRNA synthetase [Candidatus Nitrospira defluvii] Length = 486 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 179/500 (35%), Positives = 262/500 (52%), Gaps = 60/500 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL F+ + P +RMYVCG TVYD+ HIG+AR +VFDVL R L Y Sbjct: 2 LRLYNTLSGSKEPFEPLVPGKVRMYVCGVTVYDYCHIGHARSALVFDVLRRYLEYSGF-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + +N TD+DDKII+RA+++ + +T+ + +D +L T +PR Sbjct: 60 VVEFAKNFTDVDDKIIKRAKEQ------GVSCEHVTTTYINAYYEDMEKLGVRRATLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HI +++ L+ ++ G AY + ++ F YG S+R +D+ + G RV Sbjct: 114 ATEHIAEIVRLVDTLLAKGMAYRVDGDVYFQVDRYAVYGRLSKRNVDDLQAGARVDVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAM+ +LG+ FDIHGGG+DLIFPH Sbjct: 174 KRHPMDFALWKGSKPGEPSWDSPWGQGRPGWHIECSAMAMRHLGETFDIHGGGMDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQSC A E A W+HNGF+ + KMSKS GNF TI E+ + ++ + Sbjct: 234 HENEIAQSCGATGKE-FARYWVHNGFVQINQEKMSKSLGNFFTIREIFQKSEW-PDTVTG 291 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 ++R +L THYR P+DF+ Q L EA+ L+ + P Sbjct: 292 EMLRYFLLTTHYRSPLDFSDQSLKEAKNALNGFYDLFERLNESAPVHSPGDQSMQEAMVR 351 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHILGIEV 396 A ++A+ +DLNT +A+ AL L ++ K + + F A +LG+ Sbjct: 352 TREAFVAAMDDDLNTPNALAALQMLRGDTNKALEAGLSGEMRQMVRQEFRALGIVLGLLQ 411 Query: 397 -----------------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 + I + RL + K + AD +R +L S G Sbjct: 412 TDTWRFKIQQQQPSSGGAEASTGTLSDEDIADKLAARLAAKRSKNYQLADQLRAELASHG 471 Query: 440 FILEDYKNPDNGQRMTRWKQ 459 +ED ++ + RWK+ Sbjct: 472 ITIEDRQDGTS-----RWKR 486 >gi|26246536|ref|NP_752575.1| cysteinyl-tRNA synthetase [Escherichia coli CFT073] gi|91209601|ref|YP_539587.1| cysteinyl-tRNA synthetase [Escherichia coli UTI89] gi|117622783|ref|YP_851696.1| cysteinyl-tRNA synthetase [Escherichia coli APEC O1] gi|157155754|ref|YP_001461714.1| cysteinyl-tRNA synthetase [Escherichia coli E24377A] gi|157160050|ref|YP_001457368.1| cysteinyl-tRNA synthetase [Escherichia coli HS] gi|162139357|ref|YP_688055.2| cysteinyl-tRNA synthetase [Shigella flexneri 5 str. 8401] gi|170021093|ref|YP_001726047.1| cysteinyl-tRNA synthetase [Escherichia coli ATCC 8739] gi|191172271|ref|ZP_03033813.1| cysteinyl tRNA synthetase [Escherichia coli F11] gi|193064170|ref|ZP_03045254.1| cysteinyl tRNA synthetase [Escherichia coli E22] gi|193067585|ref|ZP_03048552.1| cysteinyl tRNA synthetase [Escherichia coli E110019] gi|194429574|ref|ZP_03062094.1| cysteinyl tRNA synthetase [Escherichia coli B171] gi|194437452|ref|ZP_03069549.1| cysteinyl tRNA synthetase [Escherichia coli 101-1] gi|209917742|ref|YP_002291826.1| cysteinyl-tRNA synthetase [Escherichia coli SE11] gi|218553090|ref|YP_002386003.1| cysteinyl-tRNA synthetase [Escherichia coli IAI1] gi|218557437|ref|YP_002390350.1| cysteinyl-tRNA synthetase [Escherichia coli S88] gi|218688385|ref|YP_002396597.1| cysteinyl-tRNA synthetase [Escherichia coli ED1a] gi|218693989|ref|YP_002401656.1| cysteinyl-tRNA synthetase [Escherichia coli 55989] gi|218698893|ref|YP_002406522.1| cysteinyl-tRNA synthetase [Escherichia coli IAI39] gi|227884465|ref|ZP_04002270.1| cysteinyl-tRNA synthetase [Escherichia coli 83972] gi|237707473|ref|ZP_04537954.1| cysteinyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|253774486|ref|YP_003037317.1| cysteinyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160594|ref|YP_003043702.1| cysteinyl-tRNA synthetase [Escherichia coli B str. REL606] gi|256020497|ref|ZP_05434362.1| cysteinyl-tRNA synthetase [Shigella sp. D9] gi|260842721|ref|YP_003220499.1| cysteinyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|293408676|ref|ZP_06652515.1| cysteinyl-tRNA synthetase [Escherichia coli B354] gi|293413782|ref|ZP_06656431.1| cysteinyl-tRNA synthetase [Escherichia coli B185] gi|293418593|ref|ZP_06661028.1| cysteinyl-tRNA synthetase [Escherichia coli B088] gi|297517317|ref|ZP_06935703.1| cysteinyl-tRNA synthetase [Escherichia coli OP50] gi|300819552|ref|ZP_07099746.1| cysteinyl-tRNA synthetase [Escherichia coli MS 107-1] gi|300820228|ref|ZP_07100380.1| cysteinyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300903202|ref|ZP_07121133.1| cysteinyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300919177|ref|ZP_07135707.1| cysteinyl-tRNA synthetase [Escherichia coli MS 115-1] gi|300925801|ref|ZP_07141656.1| cysteinyl-tRNA synthetase [Escherichia coli MS 182-1] gi|300929112|ref|ZP_07144605.1| cysteinyl-tRNA synthetase [Escherichia coli MS 187-1] gi|300940519|ref|ZP_07155089.1| cysteinyl-tRNA synthetase [Escherichia coli MS 21-1] gi|300987704|ref|ZP_07178317.1| cysteinyl-tRNA synthetase [Escherichia coli MS 45-1] gi|301049738|ref|ZP_07196683.1| cysteinyl-tRNA synthetase [Escherichia coli MS 185-1] gi|301301682|ref|ZP_07207817.1| cysteinyl-tRNA synthetase [Escherichia coli MS 124-1] gi|301327827|ref|ZP_07221017.1| cysteinyl-tRNA synthetase [Escherichia coli MS 78-1] gi|307314558|ref|ZP_07594160.1| cysteinyl-tRNA synthetase [Escherichia coli W] gi|312970621|ref|ZP_07784802.1| cysteinyl-tRNA synthetase [Escherichia coli 1827-70] gi|331651486|ref|ZP_08352506.1| cysteine--tRNA ligase [Escherichia coli M718] gi|331656583|ref|ZP_08357545.1| cysteine--tRNA ligase [Escherichia coli TA206] gi|331661914|ref|ZP_08362837.1| cysteine--tRNA ligase [Escherichia coli TA143] gi|331666881|ref|ZP_08367755.1| cysteine--tRNA ligase [Escherichia coli TA271] gi|331672057|ref|ZP_08372853.1| cysteine--tRNA ligase [Escherichia coli TA280] gi|331676195|ref|ZP_08376907.1| cysteine--tRNA ligase [Escherichia coli H591] gi|331681920|ref|ZP_08382553.1| cysteine--tRNA ligase [Escherichia coli H299] gi|332281678|ref|ZP_08394091.1| cysteinyl-tRNA synthetase [Shigella sp. D9] gi|29336539|sp|Q8FK44|SYC_ECOL6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|123266145|sp|Q1RF08|SYC_ECOUT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629813|sp|A7ZIT5|SYC_ECO24 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629814|sp|A7ZXI1|SYC_ECOHS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629815|sp|A1A8J2|SYC_ECOK1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187631652|sp|Q0T776|SYC_SHIF8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082063|sp|B1IZ75|SYC_ECOLC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710841|sp|B6I0H1|SYC_ECOSE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735055|sp|B7ME49|SYC_ECO45 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735056|sp|B7NL20|SYC_ECO7I RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735057|sp|B7M4M9|SYC_ECO8A RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781679|sp|B7L7F3|SYC_ECO55 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781680|sp|B7MRI9|SYC_ECO81 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|26106935|gb|AAN79119.1|AE016757_23 Cysteinyl-tRNA synthetase [Escherichia coli CFT073] gi|91071175|gb|ABE06056.1| cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Escherichia coli UTI89] gi|115511907|gb|ABI99981.1| cysteinyl-tRNA synthetase [Escherichia coli APEC O1] gi|157065730|gb|ABV04985.1| cysteinyl tRNA synthetase [Escherichia coli HS] gi|157077784|gb|ABV17492.1| cysteinyl-tRNA synthetase [Escherichia coli E24377A] gi|169756021|gb|ACA78720.1| cysteinyl-tRNA synthetase [Escherichia coli ATCC 8739] gi|190907370|gb|EDV66967.1| cysteinyl tRNA synthetase [Escherichia coli F11] gi|192929199|gb|EDV82809.1| cysteinyl tRNA synthetase [Escherichia coli E22] gi|192958997|gb|EDV89433.1| cysteinyl tRNA synthetase [Escherichia coli E110019] gi|194412371|gb|EDX28673.1| cysteinyl tRNA synthetase [Escherichia coli B171] gi|194423621|gb|EDX39611.1| cysteinyl tRNA synthetase [Escherichia coli 101-1] gi|209911001|dbj|BAG76075.1| cysteinyl-tRNA synthase [Escherichia coli SE11] gi|218350721|emb|CAU96413.1| cysteinyl-tRNA synthetase [Escherichia coli 55989] gi|218359858|emb|CAQ97400.1| cysteinyl-tRNA synthetase [Escherichia coli IAI1] gi|218364206|emb|CAR01871.1| cysteinyl-tRNA synthetase [Escherichia coli S88] gi|218368879|emb|CAR16629.1| cysteinyl-tRNA synthetase [Escherichia coli IAI39] gi|218425949|emb|CAR06755.1| cysteinyl-tRNA synthetase [Escherichia coli ED1a] gi|226898683|gb|EEH84942.1| cysteinyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|227838551|gb|EEJ49017.1| cysteinyl-tRNA synthetase [Escherichia coli 83972] gi|242376305|emb|CAQ30998.1| cysteinyl-tRNA synthetase [Escherichia coli BL21(DE3)] gi|253325530|gb|ACT30132.1| cysteinyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972495|gb|ACT38166.1| cysteinyl-tRNA synthetase [Escherichia coli B str. REL606] gi|253976705|gb|ACT42375.1| cysteinyl-tRNA synthetase [Escherichia coli BL21(DE3)] gi|257757868|dbj|BAI29365.1| cysteinyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|284920336|emb|CBG33396.1| cysteinyl-tRNA synthetase [Escherichia coli 042] gi|291325121|gb|EFE64536.1| cysteinyl-tRNA synthetase [Escherichia coli B088] gi|291433840|gb|EFF06813.1| cysteinyl-tRNA synthetase [Escherichia coli B185] gi|291471854|gb|EFF14337.1| cysteinyl-tRNA synthetase [Escherichia coli B354] gi|294494083|gb|ADE92839.1| cysteinyl-tRNA synthetase [Escherichia coli IHE3034] gi|300298494|gb|EFJ54879.1| cysteinyl-tRNA synthetase [Escherichia coli MS 185-1] gi|300404775|gb|EFJ88313.1| cysteinyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300407683|gb|EFJ91221.1| cysteinyl-tRNA synthetase [Escherichia coli MS 45-1] gi|300413722|gb|EFJ97032.1| cysteinyl-tRNA synthetase [Escherichia coli MS 115-1] gi|300418111|gb|EFK01422.1| cysteinyl-tRNA synthetase [Escherichia coli MS 182-1] gi|300454692|gb|EFK18185.1| cysteinyl-tRNA synthetase [Escherichia coli MS 21-1] gi|300462904|gb|EFK26397.1| cysteinyl-tRNA synthetase [Escherichia coli MS 187-1] gi|300527013|gb|EFK48082.1| cysteinyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300527878|gb|EFK48940.1| cysteinyl-tRNA synthetase [Escherichia coli MS 107-1] gi|300843179|gb|EFK70939.1| cysteinyl-tRNA synthetase [Escherichia coli MS 124-1] gi|300845630|gb|EFK73390.1| cysteinyl-tRNA synthetase [Escherichia coli MS 78-1] gi|306905876|gb|EFN36399.1| cysteinyl-tRNA synthetase [Escherichia coli W] gi|307552429|gb|ADN45204.1| cysteinyl-tRNA synthetase [Escherichia coli ABU 83972] gi|307628004|gb|ADN72308.1| cysteinyl-tRNA synthetase [Escherichia coli UM146] gi|309700788|emb|CBJ00084.1| cysteinyl-tRNA synthetase [Escherichia coli ETEC H10407] gi|310337270|gb|EFQ02408.1| cysteinyl-tRNA synthetase [Escherichia coli 1827-70] gi|315059799|gb|ADT74126.1| cysteinyl-tRNA synthetase [Escherichia coli W] gi|315256355|gb|EFU36323.1| cysteinyl-tRNA synthetase [Escherichia coli MS 85-1] gi|315289989|gb|EFU49378.1| cysteinyl-tRNA synthetase [Escherichia coli MS 110-3] gi|315294314|gb|EFU53665.1| cysteinyl-tRNA synthetase [Escherichia coli MS 153-1] gi|315299089|gb|EFU58343.1| cysteinyl-tRNA synthetase [Escherichia coli MS 16-3] gi|320180178|gb|EFW55115.1| Cysteinyl-tRNA synthetase [Shigella boydii ATCC 9905] gi|320201474|gb|EFW76054.1| Cysteinyl-tRNA synthetase [Escherichia coli EC4100B] gi|323160878|gb|EFZ46803.1| cysteinyl-tRNA synthetase [Escherichia coli E128010] gi|323170660|gb|EFZ56310.1| cysteinyl-tRNA synthetase [Escherichia coli LT-68] gi|323184846|gb|EFZ70216.1| cysteinyl-tRNA synthetase [Escherichia coli 1357] gi|323379632|gb|ADX51900.1| cysteinyl-tRNA synthetase [Escherichia coli KO11] gi|323945190|gb|EGB41250.1| cysteinyl-tRNA synthetase [Escherichia coli H120] gi|323952862|gb|EGB48730.1| cysteinyl-tRNA synthetase [Escherichia coli H252] gi|323958529|gb|EGB54234.1| cysteinyl-tRNA synthetase [Escherichia coli H263] gi|323965083|gb|EGB60543.1| cysteinyl-tRNA synthetase [Escherichia coli M863] gi|323975981|gb|EGB71074.1| cysteinyl-tRNA synthetase [Escherichia coli TW10509] gi|324006401|gb|EGB75620.1| cysteinyl-tRNA synthetase [Escherichia coli MS 57-2] gi|324010562|gb|EGB79781.1| cysteinyl-tRNA synthetase [Escherichia coli MS 60-1] gi|324019545|gb|EGB88764.1| cysteinyl-tRNA synthetase [Escherichia coli MS 117-3] gi|324116764|gb|EGC10678.1| cysteinyl-tRNA synthetase [Escherichia coli E1167] gi|327254874|gb|EGE66490.1| cysteinyl-tRNA synthetase [Escherichia coli STEC_7v] gi|331050759|gb|EGI22816.1| cysteine--tRNA ligase [Escherichia coli M718] gi|331054831|gb|EGI26840.1| cysteine--tRNA ligase [Escherichia coli TA206] gi|331060336|gb|EGI32300.1| cysteine--tRNA ligase [Escherichia coli TA143] gi|331066105|gb|EGI37989.1| cysteine--tRNA ligase [Escherichia coli TA271] gi|331071046|gb|EGI42405.1| cysteine--tRNA ligase [Escherichia coli TA280] gi|331076253|gb|EGI47535.1| cysteine--tRNA ligase [Escherichia coli H591] gi|331081122|gb|EGI52287.1| cysteine--tRNA ligase [Escherichia coli H299] gi|332104030|gb|EGJ07376.1| cysteinyl-tRNA synthetase [Shigella sp. D9] gi|332341889|gb|AEE55223.1| cysteinyl-tRNA synthetase CysS [Escherichia coli UMNK88] gi|332760809|gb|EGJ91097.1| cysteinyl-tRNA synthetase [Shigella flexneri 4343-70] gi|333007742|gb|EGK27218.1| cysteinyl-tRNA synthetase [Shigella flexneri K-218] gi|333008207|gb|EGK27682.1| cysteinyl-tRNA synthetase [Shigella flexneri VA-6] gi|333009963|gb|EGK29398.1| cysteinyl-tRNA synthetase [Shigella flexneri K-272] gi|333020797|gb|EGK40057.1| cysteinyl-tRNA synthetase [Shigella flexneri K-227] Length = 461 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|146341598|ref|YP_001206646.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. ORS278] gi|146194404|emb|CAL78429.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Bradyrhizobium sp. ORS278] Length = 469 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 231/474 (48%), Positives = 303/474 (63%), Gaps = 26/474 (5%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++Y+T R+ F +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 1 MDLRLYDTASREKRPFVPLDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRRIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITD+DDKI RA +++P +P+N+AI +T QF DT L L PT + Sbjct: 61 AEHVTYVRNITDVDDKINARAARDYPGLPLNEAIRKVTEVTANQFHSDTAALGSLPPTFE 120 Query: 123 PRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT+ + M+ LI+ +I GHAYEA E++FDT S+P+YG+ S RK+++Q Sbjct: 121 PRATDFVLPRPDGKADMVTLIEQLIARGHAYEAGGEVLFDTRSMPDYGALSGRKLEDQLA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G RV HKKNPADF+LWK+S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHG Sbjct: 181 GARVAVDAHKKNPADFVLWKQSSADEPGWDSPWGRGRPGWHIECSAMSAAYLGDVFDIHG 240 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDLIFPHHENEIAQS CA AN W+HN F+ +EG KMSKS GNF+TI +LL Sbjct: 241 GGLDLIFPHHENEIAQSRCAHGTSVMANYWLHNEFVQVEGAKMSKSLGNFVTIRDLLAD- 299 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPAVLS 353 WP V+RL ML HYR P D+TV+ L E+ L W + + +PA+++ Sbjct: 300 ------WPGEVLRLNMLKMHYRSPADWTVKGLEESAKTLDDWYRVAADAPGEQPEPAIIN 353 Query: 354 ALYNDLNTVSAIQALHKL-ARESTKNHDLLPIFNASAHILGI--------EVCKEHLNKN 404 AL +D+NT I LH L AR ++ + F S G E K+ Sbjct: 354 ALLDDINTPLMIAELHALRARAASGSEVDRAAFAGSLRYFGFLSETATLWEARKQQAKGV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E L+ ER K F +D +R +L + G +L+D K +G+ +T W+ Sbjct: 414 DAAEVEGLIAERTAARARKDFKESDRLRDELAAMGVVLKDGK-GADGKPVTTWE 466 >gi|254492720|ref|ZP_05105891.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268595732|ref|ZP_06129899.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|268597919|ref|ZP_06132086.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae FA19] gi|268600306|ref|ZP_06134473.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268602538|ref|ZP_06136705.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268681087|ref|ZP_06147949.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268685567|ref|ZP_06152429.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291044895|ref|ZP_06570604.1| cysteinyl-tRNA synthetase CysS [Neisseria gonorrhoeae DGI2] gi|293397970|ref|ZP_06642176.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae F62] gi|226511760|gb|EEH61105.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268549121|gb|EEZ44539.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|268551707|gb|EEZ46726.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae FA19] gi|268584437|gb|EEZ49113.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268586669|gb|EEZ51345.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268621371|gb|EEZ53771.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268625851|gb|EEZ58251.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291011789|gb|EFE03785.1| cysteinyl-tRNA synthetase CysS [Neisseria gonorrhoeae DGI2] gi|291611916|gb|EFF40985.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae F62] Length = 476 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 188/496 (37%), Positives = 257/496 (51%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 1 MMNMTAIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLREC 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +TYVRNITDIDDKII RA + + I + ++ Q +D L L P Sbjct: 61 GY--PLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P+AT +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 113 IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG D Sbjct: 173 EVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGN 284 L FPHHENEIAQS A W+HNGF+ ++G KMSKS GN Sbjct: 233 LQFPHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN 292 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 F TI E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 FFTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNT 345 Query: 345 GIID-----------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHI 391 + +A+ +D TV A+ L +LA E K +D L A I Sbjct: 346 PAAEFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGI 405 Query: 392 LG------IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 +G IE + + + IE L+ R K ++ +D IR L ILE Sbjct: 406 IGLLQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D T W++ Sbjct: 466 DS------AGGTTWRR 475 >gi|168206821|ref|ZP_02632826.1| cysteinyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] gi|170661739|gb|EDT14422.1| cysteinyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] Length = 466 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 172/488 (35%), Positives = 246/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y + Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEE------GTTVKKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFQGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILER-------YDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIR ML HYR+ ++F+ L A+ + + + + V Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ N++ IE L+ +R K + F+ AD IR +L+ +G ILED Sbjct: 406 LG--MFQKSTKGNLAEEIEALIAKRQQARKDRDFALADKIRDELKDRGIILEDT------ 457 Query: 452 QRMTRWKQ 459 + RWK Sbjct: 458 PQGVRWKM 465 >gi|269940102|emb|CBI48478.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20] Length = 466 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N+ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIGNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|255659332|ref|ZP_05404741.1| cysteine--tRNA ligase [Mitsuokella multacida DSM 20544] gi|260848414|gb|EEX68421.1| cysteine--tRNA ligase [Mitsuokella multacida DSM 20544] Length = 477 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 166/496 (33%), Positives = 244/496 (49%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ R+ EF+ + P + +Y CG T Y+ HIGNARP + +DV+ R + Sbjct: 2 LKVYNTMTRRKEEFKPLKPGEVSIYCCGVTPYNHPHIGNARPFVTWDVIRRYFAKKGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII A +E I+ + + + + L PR Sbjct: 61 -VHYIQNFTDVDDKIINAANKE------GVTWKDISDRYIKAYFEAMDALNVRHADVYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + +P++I ++Q +I G+AY + ++ + +YG S R +D+ + G R+ Sbjct: 114 VSETMPEIIAMVQKLIDKGYAYVIDNGDVYYSVEKFSHYGKLSGRSLDDMQAGARIEVNT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK + P EP W+SPWG+GRPGWHIECS MS YLGK FD HGGG DLIFP Sbjct: 174 AKHHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSTMSLKYLGKKFDFHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADR-IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQS A W+HNGF+ + KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSQACIGDDHSFAQYWLHNGFITIHNEKMSKSKNNFFTVKDIL-------KEY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 P VIR +L THYR P+DF+ +RL EA+ L + T + Sbjct: 287 PGEVIRFFILQTHYRSPLDFSDERLKEAQTSLGRLQNTKAYVDELSAKQGESDTAAELAA 346 Query: 348 -----DPAVLSALYNDLNTVSAIQALHKLAREST----------------KNHDLLPIFN 386 A A+ +D NT AI + L+++ + ++ Sbjct: 347 KAEELRKAFYEAMDDDFNTALAISQMFALSKDINIYYQEVVNGTKAFDAADFKKVAAVYA 406 Query: 387 ASAHILGIEVCKEHLNKNI---SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A I+GI +E + +E ++ R K K ++ AD IR L+ G +LE Sbjct: 407 EMAEIIGIFEQQEKAAADDGLTDKLMEIIITLRQDARKEKNWAVADKIRDALKDAGVVLE 466 Query: 444 DYKNPDNGQRMTRWKQ 459 D RWK+ Sbjct: 467 DT------PSGVRWKK 476 >gi|323938475|gb|EGB34726.1| cysteinyl-tRNA synthetase [Escherichia coli E1520] Length = 461 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGK-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|15926207|ref|NP_373740.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|148266989|ref|YP_001245932.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|150393036|ref|YP_001315711.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156978858|ref|YP_001441117.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|253315639|ref|ZP_04838852.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005323|ref|ZP_05143924.2| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269202152|ref|YP_003281421.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|295406906|ref|ZP_06816709.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8819] gi|296275775|ref|ZP_06858282.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1] gi|297246270|ref|ZP_06930119.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8796] gi|21264022|sp|Q99W73|SYC_STAAN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56749452|sp|Q932G0|SYC_STAAM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171769940|sp|A7WYU7|SYC_STAA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082076|sp|A6TZ06|SYC_STAA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082077|sp|A5IQ83|SYC_STAA9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13700420|dbj|BAB41718.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|46395518|dbj|BAB56692.2| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|147740058|gb|ABQ48356.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|149945488|gb|ABR51424.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156720993|dbj|BAF77410.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|262074442|gb|ACY10415.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|285816229|gb|ADC36716.1| Cysteinyl-tRNA synthetase [Staphylococcus aureus 04-02981] gi|294968137|gb|EFG44163.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8819] gi|297176868|gb|EFH36126.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8796] gi|312829025|emb|CBX33867.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128822|gb|EFT84821.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03] gi|329727911|gb|EGG64360.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172] Length = 466 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|257795372|ref|ZP_05644351.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9781] gi|258408941|ref|ZP_05681222.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9763] gi|258420421|ref|ZP_05683364.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9719] gi|258439342|ref|ZP_05690274.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299] gi|258444082|ref|ZP_05692419.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8115] gi|258446350|ref|ZP_05694508.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300] gi|258448443|ref|ZP_05696558.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6224] gi|258453799|ref|ZP_05701773.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5937] gi|282894964|ref|ZP_06303187.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8117] gi|282928866|ref|ZP_06336457.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A10102] gi|257789344|gb|EEV27684.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9781] gi|257840292|gb|EEV64755.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9763] gi|257843611|gb|EEV68017.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9719] gi|257847679|gb|EEV71678.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299] gi|257850752|gb|EEV74697.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8115] gi|257854944|gb|EEV77889.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300] gi|257858312|gb|EEV81199.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6224] gi|257864055|gb|EEV86809.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A5937] gi|282589474|gb|EFB94563.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A10102] gi|282762646|gb|EFC02783.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A8117] Length = 471 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 261/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 65 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 468 Query: 452 QRM 454 +R Sbjct: 469 KRG 471 >gi|194099737|ref|YP_002002872.1| CysS [Neisseria gonorrhoeae NCCP11945] gi|193935027|gb|ACF30851.1| CysS [Neisseria gonorrhoeae NCCP11945] gi|317165224|gb|ADV08765.1| hypothetical protein NGTW08_1810 [Neisseria gonorrhoeae TCDC-NG08107] Length = 475 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 256/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 6 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I + ++ Q +D L L P +P+AT Sbjct: 64 TYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPDIEPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 118 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 177 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 178 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 237 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 238 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 297 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 298 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 350 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 351 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 410 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 411 NPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDS---- 466 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 467 --AGGTTWRR 474 >gi|57634618|ref|NP_371054.2| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] Length = 476 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 261/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 10 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 69 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 70 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 122 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 181 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 182 EHKEDALDFTLWKKAKPGEISWNSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 241 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 242 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 293 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 294 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 353 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 354 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 413 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 414 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 473 Query: 452 QRM 454 +R Sbjct: 474 KRG 476 >gi|282915852|ref|ZP_06323617.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] gi|282320148|gb|EFB50493.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] Length = 471 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 262/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 65 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMEDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 468 Query: 452 QRM 454 +R Sbjct: 469 KRG 471 >gi|167550932|ref|ZP_02344688.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324269|gb|EDZ12108.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 461 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGTDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|59802301|ref|YP_209013.1| hypothetical protein NGO1993 [Neisseria gonorrhoeae FA 1090] gi|239999926|ref|ZP_04719850.1| CysS [Neisseria gonorrhoeae 35/02] gi|240013127|ref|ZP_04720040.1| CysS [Neisseria gonorrhoeae DGI18] gi|240015570|ref|ZP_04722110.1| CysS [Neisseria gonorrhoeae FA6140] gi|240081823|ref|ZP_04726366.1| CysS [Neisseria gonorrhoeae FA19] gi|240114660|ref|ZP_04728722.1| CysS [Neisseria gonorrhoeae PID18] gi|240116861|ref|ZP_04730923.1| CysS [Neisseria gonorrhoeae PID1] gi|240120198|ref|ZP_04733160.1| CysS [Neisseria gonorrhoeae PID24-1] gi|240122495|ref|ZP_04735451.1| CysS [Neisseria gonorrhoeae PID332] gi|240127206|ref|ZP_04739867.1| CysS [Neisseria gonorrhoeae SK-93-1035] gi|260441533|ref|ZP_05795349.1| CysS [Neisseria gonorrhoeae DGI2] gi|81311142|sp|Q5F5D6|SYC_NEIG1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|59719196|gb|AAW90601.1| putative cysteinyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] Length = 473 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 256/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I + ++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 349 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 408 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 NPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDS---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|317131764|ref|YP_004091078.1| cysteinyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] gi|315469743|gb|ADU26347.1| cysteinyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] Length = 465 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 175/486 (36%), Positives = 259/486 (53%), Gaps = 52/486 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL R+ EF I P R+Y CGPTVY++ H+GNARPM+VFD+L R L Y Sbjct: 1 MTMKIYNTLTREKDEFVPIKPGEARIYACGPTVYNYIHVGNARPMVVFDILRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V + +N TD+DDK+I RA +E A++ + K + +D L T Sbjct: 61 K--VLFAQNFTDVDDKMIRRANEE------GVAVAEVAEKYIAAYREDAAGLHVREATFH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +I ++ LI+ + G+AY ++ ++ F + YG S + +++ + G RV Sbjct: 113 PRATENIADILALIRTLEQKGYAYASDGDVYFRAHAFKEYGKLSHQPLEDLEAGARVDVS 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W+SPWG GRPGWHIECSAM+ H+LG+ DIH GG DLIF Sbjct: 173 ERKEDPVDFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMARHFLGQTIDIHCGGQDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA+ A+ W+HNG++N++ RKMSKS GNF T+ E+ + Sbjct: 233 PHHENEIAQSECANDA-PFAHYWMHNGYINIDNRKMSKSLGNFFTVREV-------AAKY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------------STSKG 345 IR ML YR PI+F+ + + ++ L + + S + Sbjct: 285 GYEPIRFLMLSAQYRTPINFSDEIMEQSVAALDRLYRCREALKDALRQAGETPADSAAVS 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNASAHILGI 394 +A+ +DLNT A+ L +L +E +F +LG+ Sbjct: 345 AWQEKFDAAMDDDLNTADALAVLFELVKEINTRVAEGTAGADWLKGAAGLFGTFCDVLGL 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E + + +E L+++R K K F +AD IR +L +KG +L+D + Sbjct: 405 LY--ERKERTLDAEVEVLIEKRRQARKAKDFKTADAIRDELSAKGIVLKDT------PQG 456 Query: 455 TRWKQK 460 +W+ K Sbjct: 457 VKWEYK 462 >gi|283469822|emb|CAQ49033.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398] Length = 466 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|268600169|ref|ZP_06134336.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268685235|ref|ZP_06152097.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] gi|268584300|gb|EEZ48976.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268625519|gb|EEZ57919.1| cysteinyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] Length = 476 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 188/496 (37%), Positives = 257/496 (51%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 1 MMNMTAIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLREC 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +TYVRNITDIDDKII RA + + I + ++ Q +D L L P Sbjct: 61 GY--PLTYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +P+AT +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV Sbjct: 113 IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG D Sbjct: 173 EVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGN 284 L FPHHENEIAQS A W+HNGF+ ++G KMSKS GN Sbjct: 233 LQFPHHENEIAQSVGASGHTCGHDHAQTHHGRSIASHVKYWLHNGFIRVDGEKMSKSLGN 292 Query: 285 FITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK 344 F TI E+L + + V+R +L HYR P++++ L +A+ L++ T + Sbjct: 293 FFTIREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNT 345 Query: 345 GIID-----------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHI 391 + +A+ +D TV A+ L +LA E K +D L A I Sbjct: 346 PAAEFDLSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGI 405 Query: 392 LG------IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 +G IE + + + IE L+ R K ++ +D IR L ILE Sbjct: 406 IGLLQRNPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D T W++ Sbjct: 466 DS------AGGTTWRR 475 >gi|74311083|ref|YP_309502.1| cysteinyl-tRNA synthetase [Shigella sonnei Ss046] gi|109894944|sp|Q3Z4P5|SYC_SHISS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|73854560|gb|AAZ87267.1| cysteine tRNA synthetase [Shigella sonnei Ss046] gi|323163965|gb|EFZ49773.1| cysteinyl-tRNA synthetase [Shigella sonnei 53G] Length = 461 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYAADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTEKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|329313250|gb|AEB87663.1| Cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131] Length = 466 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEYVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPRGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|297590580|ref|ZP_06949219.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|297576879|gb|EFH95594.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|312439051|gb|ADQ78122.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193893|gb|EFU24287.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00] Length = 466 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N + I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQTVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|325496424|gb|EGC94283.1| cysteinyl-tRNA synthetase [Escherichia fergusonii ECD227] Length = 461 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNQMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|260853742|ref|YP_003227633.1| cysteinyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|260866682|ref|YP_003233084.1| cysteinyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|257752391|dbj|BAI23893.1| cysteinyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|257763038|dbj|BAI34533.1| cysteinyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|323153431|gb|EFZ39686.1| cysteinyl-tRNA synthetase [Escherichia coli EPECa14] gi|323178201|gb|EFZ63779.1| cysteinyl-tRNA synthetase [Escherichia coli 1180] Length = 461 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYIALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|301020339|ref|ZP_07184446.1| cysteinyl-tRNA synthetase [Escherichia coli MS 69-1] gi|300398784|gb|EFJ82322.1| cysteinyl-tRNA synthetase [Escherichia coli MS 69-1] Length = 461 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMITEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|257424643|ref|ZP_05601070.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427311|ref|ZP_05603710.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429947|ref|ZP_05606331.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257432649|ref|ZP_05609009.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257435553|ref|ZP_05611601.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282903117|ref|ZP_06311008.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|282904907|ref|ZP_06312765.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282907857|ref|ZP_06315692.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910170|ref|ZP_06317974.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913362|ref|ZP_06321151.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282918317|ref|ZP_06326054.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282923279|ref|ZP_06330959.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|283957327|ref|ZP_06374780.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500408|ref|ZP_06666259.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|293509353|ref|ZP_06668064.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] gi|293523940|ref|ZP_06670627.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|257272213|gb|EEV04336.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275504|gb|EEV06977.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279144|gb|EEV09745.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257282064|gb|EEV12199.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257284744|gb|EEV14863.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282314147|gb|EFB44537.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|282317451|gb|EFB47823.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282322394|gb|EFB52716.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282325562|gb|EFB55870.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328241|gb|EFB58519.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331732|gb|EFB61243.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596072|gb|EFC01033.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|283790778|gb|EFC29593.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920903|gb|EFD97964.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095413|gb|EFE25674.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|291467450|gb|EFF09965.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] Length = 471 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 260/483 (53%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N + I K F +D L T Sbjct: 65 N--VEYVSNFTDVDDKLIKRSQE------LNQTVPEIAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + + ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 468 Query: 452 QRM 454 +R Sbjct: 469 KRG 471 >gi|83310335|ref|YP_420599.1| cysteinyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] gi|109894907|sp|Q2W7Y5|SYC_MAGMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|82945176|dbj|BAE50040.1| Cysteinyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] Length = 459 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 217/480 (45%), Positives = 276/480 (57%), Gaps = 45/480 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R F+ + P ++ MYVCGPTVYD AHIGNARP+IVFDVLYRLL+ Y Sbjct: 1 MPLVLYNTLTRTKDVFEPLVPGHVGMYVCGPTVYDRAHIGNARPVIVFDVLYRLLKTLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRNITD+DDKI RA++ + IS IT + T F +D L CL P + Sbjct: 60 -PSVRYVRNITDVDDKINARAKES------GEPISAITERTTAMFHEDIGALNCLLPDVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI QMI +I+ +I G AY A ++F ++ +YG+ SRR DE G RV Sbjct: 113 PRATAHITQMIAMIERLIAKGFAYAAEGHVLFAVGAMADYGALSRRSSDEMIAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KK+P DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGG DL+F Sbjct: 173 PYKKDPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMSLQHLGETFDIHGGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA+ + A W+HNG+L +EG KMSKS GNF T+ +LL+ Sbjct: 233 PHHENEIAQSTCANG-KPFARFWLHNGWLMVEGEKMSKSLGNFFTVRDLLD-------QA 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLS 353 P IRLAML THY +P D+T L +A+ L + ID VL+ Sbjct: 285 PGEAIRLAMLTTHYHQPFDWTADGLKQAKATLDRLYTALRGVADIDANGYEGEAPLEVLA 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL------LPIFNASAHILGIEVCKEH------- 400 AL +DLNT AI LH+LA K L AS H+LG+ Sbjct: 345 ALKDDLNTPLAISHLHELAGALNKATGLEDKARRKGALLASGHLLGLLYQDPEAWFKGTG 404 Query: 401 -LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE + R K + F+ AD IR+ L ++G +LED G T WK+ Sbjct: 405 AADGPSDAEIEAAITARAEARKSRNFAEADRIRQDLAARGVVLED------GAGGTTWKR 458 >gi|325205030|gb|ADZ00484.1| cysteinyl-tRNA synthetase [Neisseria meningitidis M01-240355] Length = 473 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 256/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWGRGRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHNHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 296 VL-------KQYDLEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVC 397 +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGLLQR 408 Query: 398 KEHL--------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 + + IE L+ R K ++ +D IR L ILED Sbjct: 409 DPTAFLQGSAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|158319520|ref|YP_001512027.1| cysteinyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] gi|187629787|sp|A8MLB7|SYC_ALKOO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|158139719|gb|ABW18031.1| cysteinyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] Length = 464 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 174/485 (35%), Positives = 253/485 (52%), Gaps = 52/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF ++ +RMY CGPTVY++ HIGNAR +VFD L R L Y + Sbjct: 1 MKLYNTLTRKKEEFIPLEEGKVRMYACGPTVYNYFHIGNARTFMVFDALRRYLIYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII RA +E A I+ + +++ D L P+ Sbjct: 60 -VTFVQNFTDVDDKIIRRANEE------GVAPEEISERFIKEYFYDAGTLGIEKADIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I + ++ GHAYE+N ++ FD S YG S++ +++ + G R+ + Sbjct: 113 VTENMAEIIAFVAKLVEKGHAYESNGDVYFDVSKYEEYGKLSKQSLEDLQAGARIEINEY 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + EP WESPWG GRPGWHIECSAM+ YLG+ DIHGGG DL+FPH Sbjct: 173 KKNPLDFALWKSAKAGEPSWESPWGNGRPGWHIECSAMAKRYLGETIDIHGGGGDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS +K AN W+H G+LN++ +KMSKS NF T E+ E + Sbjct: 233 HENEIAQSEACSG-KKFANYWLHVGYLNVDNKKMSKSLNNFFTPREISE-------EFDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 +R ML HYR PI+F+ L A+ L + + + Sbjct: 285 ENLRFFMLSAHYRNPINFSRDLLEAAKNGLDRLYTGKNNLEYLLENAAEREVSEEEKNFI 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARES-------TKNHDLLPIFNASAHILGI 394 + A+ +D NT I + L RE + ++ + G+ Sbjct: 345 HGLQSFKNQFIDAVDDDFNTADGIAVIFDLVREINSHISEKNSKKAVEASYDLLMELTGV 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + +++ IE+L+ ER K K F+ +D IR L+ KG +LED + Sbjct: 405 LGLLKREAEDLEEEIERLIAERQQARKDKNFALSDKIRDDLKEKGIVLEDT------AQG 458 Query: 455 TRWKQ 459 +W++ Sbjct: 459 VKWRK 463 >gi|291613145|ref|YP_003523302.1| cysteinyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] gi|291583257|gb|ADE10915.1| cysteinyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] Length = 491 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 185/511 (36%), Positives = 274/511 (53%), Gaps = 78/511 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R EF+ I P+ +RMYVCG TVYD+ H+G+AR M+VFD++YR L+ + Sbjct: 2 LKIYNTLARDKQEFKPIIPNTVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWLKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + ++I +T + +D L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIKRAAENK------ESIHALTQRFIDAMHEDADTLGVQRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ ++ + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 114 ATQYVPQMLEMVAQLEQNGLAYQAADGDVNYAVRKFDGYGKLSGKSLEDLRAGERVEVVS 173 Query: 184 HKKNPADFILWKRSTPME---PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + E W+S WG+GRPGWH+ECSAM+S LG FDIHGGG DL Sbjct: 174 DKHDPLDFVLWKHAKDGEADEVKWDSKWGKGRPGWHLECSAMASDILGNHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A R + N W+HNGF+ ++ KMSKS GNF TI E+L + Sbjct: 234 QFPHHENEIAQSEGAHRC-QYVNYWMHNGFVRVDNEKMSKSLGNFFTIREVL-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------------------- 338 + A V+R +L HYR P++++ L +A+ L++ Sbjct: 286 KYDAEVVRFFILRAHYRSPLNYSDVHLDDAKGALTRLYTALKSAPSSSILPPEGEGSEFP 345 Query: 339 ----QTSTSKGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDL--LPIFN 386 + + +G+ID SA+ +D NT AI L LA E ++ + Sbjct: 346 SPSGRGARGEGVIDWDTPHAARFKSAMDDDFNTPEAIAVLFDLANEVNRSQSVTAAAELK 405 Query: 387 ASAHILGI------EVCKEHLNKNISI------------AIEKLVQERLILLKMKKFSSA 428 A +LG+ + + + N+++ I+ L++ R+ K K F+ A Sbjct: 406 TLAGVLGLLQRDPQDFLQGRASMNLTVPTPTLEASGGALDIDALIEARIAAKKSKNFAEA 465 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 D IRK+L G +LED + T W++ Sbjct: 466 DRIRKELLGAGIVLEDT------PQGTTWRR 490 >gi|82750237|ref|YP_415978.1| cysteinyl-tRNA synthetase [Staphylococcus aureus RF122] gi|109894947|sp|Q2YSD1|SYC_STAAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|82655768|emb|CAI80168.1| cysteinyl-tRNA synthetase [Staphylococcus aureus RF122] Length = 466 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N + I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQTVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + +N W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFSNYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|329298451|ref|ZP_08255787.1| cysteinyl-tRNA synthetase [Plautia stali symbiont] Length = 461 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 252/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ E + I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEELKPIHACEIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYVGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESIETLTNRMIAEMHKDFAALGILPPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I LI +I GHAY A+ +++FD S +YG SR+ +++ + G RV Sbjct: 114 ATRHIGEIIELIGKLIDRGHAYVADNGDVMFDVLSDKDYGVLSRQDLEQLQAGARVEVAE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPAWNSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEVAQSTCAHDG-PYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++ L +A L + T + +A Sbjct: 286 AETVRYFLMSGHYRSQLNDGEDNLNQARAALERLYTALRHTDASATPAGGEAFEARFRTA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + L A +LGI Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKSEDKAAADALAAKLRQLADVLGILQQDPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +N + IE V+ R K ++ AD R +L G I+ED G + + W+ Sbjct: 406 AQVNADEVAEIEHWVKTRANARAAKDWAQADIARDKLNELGVIVED------GPKGSSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|225077094|ref|ZP_03720293.1| hypothetical protein NEIFLAOT_02147 [Neisseria flavescens NRL30031/H210] gi|224951651|gb|EEG32860.1| hypothetical protein NEIFLAOT_02147 [Neisseria flavescens NRL30031/H210] Length = 473 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 186/490 (37%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKESFSPIDPKNVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------Q 339 +L + + V+R +L HYR P++++ L +A+ L++ + Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPATAFE 348 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--- 394 S + +A+ +D TV A+ L +LA E K +D L A I+G+ Sbjct: 349 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 408 Query: 395 ---EVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 E + + + I+ L+ R K ++ +D IR L ILED Sbjct: 409 DPTEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|240114101|ref|ZP_04728591.1| CysS [Neisseria gonorrhoeae MS11] gi|240126656|ref|ZP_04739542.1| CysS [Neisseria gonorrhoeae SK-92-679] Length = 473 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 256/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 4 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 61 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I + ++ Q +D L L P +P+AT Sbjct: 62 TYVRNITDIDDKIIARAAEN------GETIGELNARFIQAMHEDADALGVLRPDIEPKAT 115 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 116 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 175 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 176 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 235 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 236 ENEIAQSVGASGHTCGHDHAQTHHGRSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 295 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-- 348 +L + + V+R +L HYR P++++ L +A+ L++ T + + Sbjct: 296 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFD 348 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 349 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 408 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + IE L+ R K ++ +D IR L ILED Sbjct: 409 NPIEFLQGGAVSDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILEDS---- 464 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 465 --AGGTTWRR 472 >gi|90580099|ref|ZP_01235907.1| cysteinyl-tRNA synthetase [Vibrio angustum S14] gi|90438984|gb|EAS64167.1| cysteinyl-tRNA synthetase [Vibrio angustum S14] Length = 460 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 180/481 (37%), Positives = 254/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEAFTPIQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALGMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A N +++F+ S +YG S++ +D+ + G RV Sbjct: 114 ATQFIAEIIALCERLIERGFAYVASNGDVMFEVSKYEDYGRLSKQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 +R ++ HYR ++++ L +A L + + A A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEDNLKQARSALERLYTSLRGLDTSVEAAGGEEFVTRFKEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKTDDVATASALGARMRELADVLGLLSQEPEAFLQGG 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+Q+RL K +++AD R +L + G ILED G + T W++ Sbjct: 406 AGEDDNVAEIEALIQQRLDARAAKDWAAADEARDKLLAMGIILED------GAQGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|296101636|ref|YP_003611782.1| cysteinyl tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056095|gb|ADF60833.1| cysteinyl tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 461 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 2 LKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRFLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIVEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++F + P YGS SR+ +D+ + G RV Sbjct: 114 ATHHIHEIIDITEKLIARGHAYVADNGDVMFSVPTDPTYGSLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LGK FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGKHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHGGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + + Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVEAAGGEAFEARFVEV 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K+ D+ + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANALAAHLRKLSSVLGLLEQEPDAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+ RL + K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALINARLEARQAKDWAAADAARNRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|294496962|ref|YP_003560662.1| cysteinyl-tRNA synthetase [Bacillus megaterium QM B1551] gi|294346899|gb|ADE67228.1| cysteinyl-tRNA synthetase [Bacillus megaterium QM B1551] Length = 465 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 255/487 (52%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL R+ F ++ + ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IKLYNTLTRQKETFVPLEENKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A++ + + + I ++ + +DT+ L C PR Sbjct: 62 -VEYVSNFTDVDDKLIKAAKE------LGEDVPTIANRFIDAYFEDTSALGCKHADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I ++ G+AYE+ ++ + T YG S + IDE + G R+ Sbjct: 115 VTENMDIIIEFIDELVKKGYAYESEGDVYYRTRKFEGYGKLSHQSIDELQSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDPLDFTLWKATKDGEIAWDSPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KSFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 ++R +L HYR PI++ + L + + Sbjct: 287 SLLRFFILSVHYRHPINYNEEILENTRKGFERLQTAYGNLTHRLEAATNLQEDASEWFEK 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLAREST-------KNHDLLPI----FNASAHIL 392 + + + +D NT +AI L +LA+++ + D++ F + Sbjct: 347 LKELRETFVEEMDDDFNTANAISVLFELAKQANLYLLEQTTSTDVIEAFIKEFKELGAAI 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI + L + I++L+Q R+ K + F AD IR +L++K ILED Sbjct: 407 GITFGEAEL---LDEEIDQLIQGRIQARKDRNFQLADQIRDELKAKNIILEDT------A 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|258422624|ref|ZP_05685530.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9635] gi|257847196|gb|EEV71204.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9635] Length = 471 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 174/483 (36%), Positives = 264/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 65 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMNDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEI 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGIID 348 V+R M+ HYR PI++ ++ + A L + + + ID Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQAYID 348 Query: 349 P------AVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 468 Query: 452 QRM 454 +R Sbjct: 469 KRG 471 >gi|328544357|ref|YP_004304466.1| Cysteine tRNA synthetase (Cysteine--tRNA ligase) [polymorphum gilvum SL003B-26A1] gi|326414099|gb|ADZ71162.1| Cysteine tRNA synthetase (Cysteine--tRNA ligase) [Polymorphum gilvum SL003B-26A1] Length = 514 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 259/506 (51%), Positives = 319/506 (63%), Gaps = 49/506 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +++YNTL R +F IDP+N+RMYVCGPTVYDFAHIGNARP IVFDVLYRLLR+ YG Sbjct: 9 KGLRLYNTLTRAKQDFVPIDPANVRMYVCGPTVYDFAHIGNARPAIVFDVLYRLLRHLYG 68 Query: 63 EKCVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 VTYVRNITD+DDKI RA E + +NDAI+ +T K Q+ D + L C Sbjct: 69 ADRVTYVRNITDVDDKINARALRDFGPEIEAGRMSLNDAIARVTEKTADQYHSDVSALGC 128 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG 176 L PTH+PRAT HI MI +I +I GHAYEA E++FD +S+P YG S+R +DEQ G Sbjct: 129 LPPTHEPRATEHIEGMIVMIGTLIERGHAYEAAGEVLFDVASMPAYGGLSKRNLDEQIAG 188 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 RV HKKNP DF+LWK+S+ EPGW SPWGRGRPGWHIECS MS H+LGKVFDIHGG Sbjct: 189 ARVAVDSHKKNPGDFVLWKQSSAEEPGWGSPWGRGRPGWHIECSVMSEHHLGKVFDIHGG 248 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 GLDLIFPHHENEIAQSCCA +K AN W+HNGF+ +EGRKMSKS GNF+TI++LL T Sbjct: 249 GLDLIFPHHENEIAQSCCAHGTDKMANYWLHNGFVQVEGRKMSKSEGNFVTIHDLLHTDT 308 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ------TSTSKGIIDPA 350 FGGR WP V+RLAMLMTHYREPIDF+V+RL EA L+ W + S + A Sbjct: 309 FGGRKWPGEVLRLAMLMTHYREPIDFSVKRLEEANANLTNWLRQIDEHVLSRNSPTAYSA 368 Query: 351 VLSA----------------LYNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHILG 393 +L A L +DL + I LH ++ + S + ILG Sbjct: 369 ILDAAQNNDQNDNLAISVEVLSDDLAMPNVIAQLHGMSTDISLGVRSPRSLAWDMMGILG 428 Query: 394 ----IEVCKEHLNKNISIAIEKLVQERLI---------------LLKMKKFSSADYIRKQ 434 I+ K + + + ERL L+K K F+ AD IR Sbjct: 429 FLGIIDAEVLRRQKVEPEGLSQRIAERLAIQDAADAAKAAGDKDLMKQK-FAEADRIRAD 487 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L ++G +L+D K+P GQR+T W+ K Sbjct: 488 LAAEGILLKDGKDPQTGQRVTTWEVK 513 >gi|215485603|ref|YP_002328034.1| cysteinyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] gi|254781678|sp|B7UKK3|SYC_ECO27 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|215263675|emb|CAS08007.1| cysteinyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] Length = 461 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGR-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|306813010|ref|ZP_07447203.1| cysteinyl-tRNA synthetase [Escherichia coli NC101] gi|305853773|gb|EFM54212.1| cysteinyl-tRNA synthetase [Escherichia coli NC101] Length = 461 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+ P DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRTPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|323191193|gb|EFZ76457.1| cysteinyl-tRNA synthetase [Escherichia coli RN587/1] Length = 461 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKGGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|167758881|ref|ZP_02431008.1| hypothetical protein CLOSCI_01226 [Clostridium scindens ATCC 35704] gi|167663621|gb|EDS07751.1| hypothetical protein CLOSCI_01226 [Clostridium scindens ATCC 35704] Length = 468 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 179/491 (36%), Positives = 256/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL ++ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKLYNTLSKQKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+RA +E + I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKRAIEE------GVSSDEISKRYIAECKKDMDGMNIKPATKNPM 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ +IQ +I G+AYE N + + T YG S + +D+ + G R V Sbjct: 113 ATEEICGMVDMIQTLIDKGYAYEKNGTVYYRTRKFEEYGKLSHKNLDDLRSGERSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDPLDFVLWKPKKEGEPAWESPWSDGRPGWHIECSEMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ RKMSKS GNF T+ E+ + Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWMHNAFLNIDNRKMSKSLGNFRTVREI-------SQQ 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------------- 347 + ++R ML HYR P++F+ + ++ L + + + + Sbjct: 285 YDLQILRFFMLSAHYRSPLNFSADLMEASKSGLERIVNAADNLKFLLGNAKSESMTQEEE 344 Query: 348 ---------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 A+ +D NT AI ++ L + D L + Sbjct: 345 AAFAKTAEYVQEFERAMDDDFNTADAIASVFDLVKYINTTADADKSKEFLQNLFDLLVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG+ V K+ + ++ IEK+++ER K K F+ AD IR +L +KG +LED + Sbjct: 405 TDVLGLIVDKKE--EMLAEDIEKMIEERQAARKAKDFARADAIRDELLAKGIVLEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKK 467 >gi|163938097|ref|YP_001642981.1| cysteinyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|229558616|sp|A9VNA2|SYC_BACWK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|163860294|gb|ABY41353.1| cysteinyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] Length = 465 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 173/489 (35%), Positives = 252/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFMPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEDLLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 AEMEKFQVAFEEAMDDDFNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + IE L+Q+R+ + + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEEL---LDEEIEALIQKRIEARQNRDFALSDQIRDDLKGRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|161504307|ref|YP_001571419.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|187631629|sp|A9MLA7|SYC_SALAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160865654|gb|ABX22277.1| hypothetical protein SARI_02415 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 461 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 177/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIEITRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKSEDMTAANAMASHLRKISGVLGLLEQEPDAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|323963293|gb|EGB58857.1| cysteinyl-tRNA synthetase [Escherichia coli H489] Length = 461 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANENS------ESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|253681484|ref|ZP_04862281.1| cysteine--tRNA ligase [Clostridium botulinum D str. 1873] gi|253561196|gb|EES90648.1| cysteine--tRNA ligase [Clostridium botulinum D str. 1873] Length = 466 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 166/487 (34%), Positives = 257/487 (52%), Gaps = 53/487 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF+ I + MYVCGPTVY++ HIGN R +VFD + R Y + Sbjct: 1 MKLFNTMTRQKEEFKPIKDGEVSMYVCGPTVYNYFHIGNGRTFLVFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E N + + + ++ KD L T PR Sbjct: 60 -VNFIQNFTDIDDKMIKKANEE------NVTVKELGDRFINEYYKDADGLNIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I ++++I G+AYE + ++ F T YG S + +D+ + G R+ Sbjct: 113 ATEFMDEIISFVKDLIDKGYAYEVDGDVYFSTKKFAEYGKLSGQNLDDLQAGARITVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK P EP WESPWG+GRPGWHIECS M+ LG DIH GG DL+FPH Sbjct: 173 KQDPMDFAIWKNEKPGEPSWESPWGKGRPGWHIECSCMAHKLLGDTIDIHAGGADLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+H+ +LN+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARNG-KDFANYWMHSAYLNINNKKMSKSLNNFFTTREILER-------YDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIRL ML HYR P++F+ + L A+ + + + + V Sbjct: 285 EVIRLFMLSAHYRTPLNFSDELLESAKASNERLYNSIGNLERLLDEVKIEEMTGVEKEYI 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLAREST---KNHDLLPIFNASAHI---LG-- 393 + + +D NT AI + L +E + N S + LG Sbjct: 345 KVLNSYKEKYIEKMDDDFNTADAIAVIFDLIKEINTHVNTDSSKELVNYSLELIRELGMP 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ +++ IE L+++R K + ++ AD IR L+++G +LED + Sbjct: 405 LGILQKSTIVDLNAEIEGLIEQRQKARKDRDWALADKIRDDLKARGIVLEDT------AQ 458 Query: 454 MTRWKQK 460 RWK++ Sbjct: 459 GVRWKKE 465 >gi|300996966|ref|ZP_07181604.1| cysteinyl-tRNA synthetase [Escherichia coli MS 200-1] gi|300304371|gb|EFJ58891.1| cysteinyl-tRNA synthetase [Escherichia coli MS 200-1] Length = 461 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDID+KII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDEKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|254804107|ref|YP_003082328.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha14] gi|254667649|emb|CBA03462.1| Cysteinyl-tRNA synthetase [Neisseria meningitidis alpha14] Length = 475 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 257/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 6 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 64 TYVRNITDIDDKIIARAAEN------GETIGKLTARFIQAMHEDADALGVLRPDIEPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I +G AY A N ++ + YG S + +D+ + G RV K Sbjct: 118 ENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 177 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL FPHH Sbjct: 178 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHH 237 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 238 ENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 297 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 298 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFG 350 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 351 LSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 410 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + I+ L+ R K ++ +D IR L ILED Sbjct: 411 DPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWAESDRIRDLLNEHKIILEDN---- 466 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 467 --AGGTTWRR 474 >gi|254517452|ref|ZP_05129508.1| cysteinyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] gi|226911201|gb|EEH96402.1| cysteinyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] Length = 466 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 165/488 (33%), Positives = 249/488 (51%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L RK EF + P I+MYVCGPTVY++ HIGN R I+FD + R Y + Sbjct: 1 MRVYNSLTRKKEEFIPLTPGEIKMYVCGPTVYNYFHIGNGRTFIIFDTIRRYFEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E +S I + ++ KD L + + PR Sbjct: 60 -VKFVQNFTDIDDKMIKKANEE------GTTVSDIGDRYIDEYYKDADGLNIMRASINPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I ++ +I G+AYE + ++ F T +YG + +++ + G R+ Sbjct: 113 ATEYIQDIIEFVKGLIEKGYAYEVDGDVYFRTKKFESYGKLIGQNLEDLQAGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK P EP WESPWG GRPGWHIECS M+ LG DIH GG+DL FPH Sbjct: 173 KEDPMDFAVWKAQKPGEPAWESPWGMGRPGWHIECSCMAKKILGDTIDIHAGGMDLAFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+H FLN+ +KMSKS NF+T ++L + + A Sbjct: 233 HENEIAQSEALTG-KPFARYWLHGAFLNINNQKMSKSLNNFLTARDIL-------KQYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R ML HYR ++F+ L A+ + + ++ + V Sbjct: 285 DVVRFLMLSGHYRVQLNFSDDLLESAKASVERLYNAVSNLENLIDEVKKESMDDKEKAYL 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI A+ L ++ N L + + Sbjct: 345 EFLDVYRQRYIEKMDDDFNTADAITAIFDLIKDINTNVSIESSRELCEAALSLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI + ++ IE+L+ ER K + F+ AD IR L+++ +LED Sbjct: 405 LGI--LQNSTKGSLEEEIERLIAERQQARKDRNFALADKIRNDLKARNIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 457 PQGVRWKK 464 >gi|110799706|ref|YP_697116.1| cysteinyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|168211251|ref|ZP_02636876.1| cysteinyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] gi|122958668|sp|Q0TMM4|SYC_CLOP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110674353|gb|ABG83340.1| cysteinyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|170710753|gb|EDT22935.1| cysteinyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] Length = 466 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 171/488 (35%), Positives = 245/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL +K EF + P ++MYVCGPTVY+F HIGN R IVFD + R Y + Sbjct: 2 IKVYNTLNKKKEEFIPLTPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I +++ +D L T PR Sbjct: 61 -VDFVQNFTDIDDKMIKKANEE------GTTVKKIGDTYIKEYYQDADALNIERATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 114 ATEFIGEIIKFVKGLVDKGYAYEVDGDVYFSTKKFEGYGKLSGQNIEDLQSGARISVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W SPWG GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KKDPMDFAIWKAQKPGEPAWNSPWGMGRPGWHIECSCMAKKLLGETIDIHAGGSDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A W+H+ F+N+ KMSKS NF T E+LE + A Sbjct: 234 HENEIAQSEALTG-EPFARYWLHSAFVNVNNEKMSKSLNNFFTAREILER-------YDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 VIR ML HYR+ ++F+ L A+ + + + + V Sbjct: 286 DVIRFLMLSAHYRQQLNFSEDLLESAKASVERIYNAIGNLENLIDEVSREEMNEEEKAYL 345 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI A+ L +++ N L + Sbjct: 346 ESLNKYKEKYIEKMDDDFNTADAITAIFDLIKDTNTNITIDSSKELAQKALELIRELGAP 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG + ++ N+ IE L+ +R K + F+ AD IR +L+ +G +LED Sbjct: 406 LG--MFQKSTKGNLEEEIEALIAKRQQARKDRDFTLADKIRDELKDRGIVLEDT------ 457 Query: 452 QRMTRWKQ 459 + RWK Sbjct: 458 PQGVRWKM 465 >gi|16128510|ref|NP_415059.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|89107393|ref|AP_001173.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110] gi|170080109|ref|YP_001729429.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238899807|ref|YP_002925603.1| cysteinyl-tRNA synthetase [Escherichia coli BW2952] gi|300949224|ref|ZP_07163257.1| cysteinyl-tRNA synthetase [Escherichia coli MS 116-1] gi|300954345|ref|ZP_07166803.1| cysteinyl-tRNA synthetase [Escherichia coli MS 175-1] gi|301022849|ref|ZP_07186685.1| cysteinyl-tRNA synthetase [Escherichia coli MS 196-1] gi|135097|sp|P21888|SYC_ECOLI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558631|sp|B1XGC4|SYC_ECODH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|259511830|sp|C4ZUX4|SYC_ECOBW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|20664375|pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase gi|20664376|pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase gi|20664379|pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With Cysteine Substrate Bound gi|20664380|pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With Cysteine Substrate Bound gi|56966182|pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary Complex With Trnacys gi|41206|emb|CAA41983.1| cysteinyl-tRNA synthetase [Escherichia coli K-12] gi|145692|gb|AAA23658.1| transfer RNA-Cys synthetase [Escherichia coli] gi|1773207|gb|AAB40279.1| cysteinyl-tRNA synthetase [Escherichia coli] gi|1786737|gb|AAC73628.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|85674663|dbj|BAE76303.1| cysteinyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110] gi|169887944|gb|ACB01651.1| cysteinyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238860697|gb|ACR62695.1| cysteinyl-tRNA synthetase [Escherichia coli BW2952] gi|260450291|gb|ACX40713.1| cysteinyl-tRNA synthetase [Escherichia coli DH1] gi|299881060|gb|EFI89271.1| cysteinyl-tRNA synthetase [Escherichia coli MS 196-1] gi|300318682|gb|EFJ68466.1| cysteinyl-tRNA synthetase [Escherichia coli MS 175-1] gi|300451342|gb|EFK14962.1| cysteinyl-tRNA synthetase [Escherichia coli MS 116-1] gi|315135208|dbj|BAJ42367.1| cysteinyl-tRNA synthetase [Escherichia coli DH1] gi|323943145|gb|EGB39302.1| cysteinyl-tRNA synthetase [Escherichia coli E482] gi|227964|prf||1714234A Cys-tRNA synthetase Length = 461 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|300857267|ref|YP_003782251.1| cysteinyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] gi|300437382|gb|ADK17149.1| cysteinyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] Length = 465 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 255/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF +D ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKIFNTMTREKEEFVPLDSDEVKMYVCGPTVYNFFHIGNARTFVVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A+ EH + + K +++ KD L T PR Sbjct: 60 -VRFVQNFTDIDDKMIKKAQDEH------ITVKELGDKFIKEYYKDADALHIKRATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I I ++I +AYE + ++ F T NYG S + ID+ + G R+ Sbjct: 113 ATLYITKIIEFIGDLIDRDYAYEIDGDVYFSTKKFSNYGKLSGQNIDDLRAGARIDVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ LG+ DIH GG DL+FPH Sbjct: 173 KKDPMDFAVWKGQKPGEPAWESPWGMGRPGWHIECSCMAHDLLGETIDIHAGGSDLMFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+H+ F+N+ +KMSKS NF T+ E+LE + Sbjct: 233 HENEIAQSEGRTG-KTFARYWMHSAFVNVNNQKMSKSLNNFFTVREILE-------KYEP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 VIR+ ML HYR I+F+++ L + L + + T+ Sbjct: 285 DVIRMFMLSGHYRTQINFSMELLDSTKSALDRLYNSITNLENLLDNKEDIPISENEKEYR 344 Query: 344 --KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 G + + +D NT AI + L ++ + D L + Sbjct: 345 NKLGKYKQRYIEKMDDDFNTADAISVIFDLVKDINVSINKDSSVEVIRDSLNLIRELGAP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ +I IE L+++R I K ++ +D IR L+++G +LED Sbjct: 405 LGI--LQQSKRGSIEKEIEALIEKRQIARSEKNWALSDKIRDDLKAQGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 RWK+ Sbjct: 457 PEGVRWKR 464 >gi|261855684|ref|YP_003262967.1| cysteinyl-tRNA synthetase [Halothiobacillus neapolitanus c2] gi|261836153|gb|ACX95920.1| cysteinyl-tRNA synthetase [Halothiobacillus neapolitanus c2] Length = 454 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 185/474 (39%), Positives = 255/474 (53%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY++ R EF I P + MYVCG TVYD HIG+AR M+VFD++ R R E Sbjct: 2 LVIYDSHARAKREFVPIKPKTVGMYVCGMTVYDRCHIGHARVMVVFDMVVRYFRASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++I +T + + D L CL PT +PR Sbjct: 61 -VHYVRNITDIDDKIIARAAENK------ESIRSLTERYIEAMHDDAAALGCLLPTAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + M+ +I+++I GHAY A N ++ FD S+ YG S R D+ + G RV Sbjct: 114 ATESVGDMVAMIESLIERGHAYRAANGDVYFDVSTFDRYGELSNRNPDDLRAGARVEIDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK P +P W++P+G GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAEKPGDPSWDAPFGPGRPGWHIECSAMSTRALGATFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+HNGF+ + KMSKS GNF T+ E++ R + Sbjct: 234 HHENEIAQSECATGHH-YVNYWMHNGFVRINEEKMSKSLGNFFTVAEVM-------RQYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIIDPAVLSALY 356 VIRL +L +HYR P++++ Q L A L++W PQ T + + Sbjct: 286 PEVIRLFVLSSHYRSPLNYSDQNLDAARASLTRWYTAIKDAPQNGTPNPEVMARFRGVMD 345 Query: 357 NDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGIEVCKEH---------LNKNI 405 +D NT A+ + + E ++ D A IL + ++ Sbjct: 346 DDFNTPEALAIVFEQISELNRSKDANCAATIKAIGEILNLGQHDPESFLRWAPSSSDQLS 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 AIE+ + ER K F+++D IR +L++ G +LED T W++ Sbjct: 406 DEAIEQKIAERASARANKDFAASDRIRDELQAAGIVLEDK------AGQTTWRR 453 >gi|182420105|ref|ZP_02951339.1| cysteinyl-tRNA synthetase [Clostridium butyricum 5521] gi|237666779|ref|ZP_04526764.1| cysteine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376142|gb|EDT73729.1| cysteinyl-tRNA synthetase [Clostridium butyricum 5521] gi|237657978|gb|EEP55533.1| cysteine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 466 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 165/488 (33%), Positives = 248/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YN+L R+ EF I P ++MYVCGPTVY++ HIGN R I+FD + R L Y + Sbjct: 1 MRLYNSLTRQKEEFVPIVPGEVKMYVCGPTVYNYFHIGNGRTFIIFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+++N TDIDDK+I +A E + + K ++ +D L T PR Sbjct: 60 -VTFIQNFTDIDDKMINKANAE------GITVKELGDKFIDEYYQDADGLQVKRATINPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +++ ++++I G AYE + ++ F T YG + +++ + G R+ Sbjct: 113 ATEYIDEVVEFVKDLIDRGFAYEIDGDVYFSTKKFEEYGKLCGQNLEDLQSGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ LG DIHGGG+DL FPH Sbjct: 173 KKDPMDFAVWKSQKPGEPAWESPWGLGRPGWHIECSCMAKKLLGDTIDIHGGGMDLKFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+H F+N++ +KMSKS NF+T E L + + + Sbjct: 233 HENEIAQSEAVTGQK-FANYWMHAAFVNVDNKKMSKSENNFVTAREAL-------KKYNS 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 VIR ML HYR I+F+ + L A+ + + + + Sbjct: 285 DVIRFLMLSGHYRTQINFSAELLDSAKSSVERLYNCVNNLENLINEVNRKEANDSEKAYL 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT I + L ++ N + L + Sbjct: 345 KSLDKHREKFIEKMDDDFNTADGISVIFDLIKDINNNVSIDSSSELCEGTLNLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI E K++ + I++L+ +R K + F+ AD IR L+++ ILED Sbjct: 405 LGILQKTEE--KSLEVEIQELIDKRQEARKNRDFALADKIRDDLKARNIILEDT------ 456 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 457 PQGVRWKK 464 >gi|309797198|ref|ZP_07691594.1| cysteinyl-tRNA synthetase [Escherichia coli MS 145-7] gi|308119182|gb|EFO56444.1| cysteinyl-tRNA synthetase [Escherichia coli MS 145-7] Length = 461 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQLRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|157146856|ref|YP_001454175.1| cysteinyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895] gi|157084061|gb|ABV13739.1| hypothetical protein CKO_02631 [Citrobacter koseri ATCC BAA-895] Length = 461 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 60 TLKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKHNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKTVAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K+ D+ + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKSEDMAAANAMASHLRKISGVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGELAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|15612674|ref|NP_240977.1| cysteinyl-tRNA synthetase [Bacillus halodurans C-125] gi|11387138|sp|Q9KGF4|SYC_BACHD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|10172723|dbj|BAB03830.1| cysteinyl-tRNA synthetase [Bacillus halodurans C-125] Length = 466 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 180/486 (37%), Positives = 263/486 (54%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++N+L RK F ++ ++MYVCGPTVY++ HIGNARP IV+D++ R L+Y E Sbjct: 3 IQVFNSLTRKKEPFVPLEEGKVKMYVCGPTVYNYIHIGNARPPIVYDMIRRYLKYRGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + ++ + + +DT+ L L H PR Sbjct: 62 -VLFVSNFTDVDDKIIRVANE------LGEDVFAVANRFIEAYKQDTSALGVLEADHHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + ++I I+ + G+AYE ++ F T YG S + ID+ G R+ Sbjct: 115 VTETMSEIISFIRVLEEKGYAYEQGGDVYFRTRKFKEYGKLSAQSIDDLLSGARIEVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL FPH Sbjct: 175 KEDPLDFVLWKAAKEGEVSWDSPWGKGRPGWHIECSAMVKKYLGDTIDIHAGGQDLKFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + AN W+HNGF+NL+ KMSKS GN + NE++ R A Sbjct: 235 HENEIAQSECMTG-KPMANYWLHNGFINLDNEKMSKSLGNVVLANEMI-------RQHSA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPA---- 350 V+R ML HYR PI+F+ + L A+ L + Q S G +P Sbjct: 287 EVLRFFMLSAHYRSPINFSDELLEGAKRGLERLQTAVSSLVHRLQESADFGGTEPWLERI 346 Query: 351 ------VLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D N+ + I L LA+E+ + + +FN +LG Sbjct: 347 DEFRGRFIEEMDDDFNSANGIAVLFDLAKEANRYLREEQTSKAVLQSFIDLFNELGGVLG 406 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ + + IE+L++ER K K F AD IR QL+++G ILED + Sbjct: 407 VTLNRQE--ELLDEEIERLIEERNEARKAKNFQRADDIRDQLKAEGIILEDT------PQ 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKR 464 >gi|148653067|ref|YP_001280160.1| cysteinyl-tRNA synthetase [Psychrobacter sp. PRwf-1] gi|187629854|sp|A5WEW9|SYC_PSYWF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148572151|gb|ABQ94210.1| cysteinyl-tRNA synthetase [Psychrobacter sp. PRwf-1] Length = 505 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 189/505 (37%), Positives = 257/505 (50%), Gaps = 69/505 (13%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIY+++ F+ + I MYVCG TVYD+ HIG+AR M+ FDV+ R LR+ Sbjct: 22 QAALKIYDSMTTNKRSFEPLQAGKIGMYVCGMTVYDYCHIGHARVMVAFDVVSRWLRHLG 81 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRNITDIDDKII RA + + I +T + + +D L C P Sbjct: 82 YE--VNYVRNITDIDDKIIARANEN------GEPIGELTHRFIKAMHEDAAALGCENPDA 133 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI +M+ +I + HAY A N ++ + + YG S+RK+++ + G+RV Sbjct: 134 EPRATEHIDEMLDMIGTLEQKQHAYAASNGDVYYAVDTFEGYGKLSKRKLEDLQAGSRVD 193 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK + EP W S WG GRPGWHIECSAMS+ LG FDIHGGG DL Sbjct: 194 VDTDKKNPFDFVLWKAAKAGEPQWASSWGGGRPGWHIECSAMSTKCLGNSFDIHGGGHDL 253 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A+ W+H GF+N++G KMSKS GNF TI E++ + Sbjct: 254 QFPHHENEIAQSEAATGC-TYAHNWMHVGFINVDGEKMSKSLGNFFTIREVM-------Q 305 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------- 347 + IR +L +HYR ++F+ L EA L++ Q + + Sbjct: 306 KFHPETIRFFILSSHYRSQVNFSDAALKEAHSGLTRIYQALKAADAVLNTSVSAAESIES 365 Query: 348 ---------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------IF 385 ++A+ +D NT AI L LA+E K Sbjct: 366 INAEHAGTHSADFIAAMNDDFNTPQAISVLFSLAKEVNKLARDADDADTQAQLQLQAVQL 425 Query: 386 NASAHILGI------EVCKEHLNKNI-----SIAIEKLVQERLILLKMKKFSSADYIRKQ 434 A A IL I E + + + IE L+QERL K F+ AD IR Sbjct: 426 RALAGILNIGQLNPAEFLQAQIGEVAEDQMSDEQIEALIQERLDSKANKNFARADEIRDL 485 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L++ G LED K T W++ Sbjct: 486 LQNSGIELEDGK------LGTTWRR 504 >gi|283784327|ref|YP_003364192.1| cysteinyl-tRNA synthetase [Citrobacter rodentium ICC168] gi|282947781|emb|CBG87337.1| cysteinyl-tRNA synthetase [Citrobacter rodentium ICC168] Length = 461 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 261/482 (54%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + P+YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPSYGQLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKTVAPAGGEAFEARFIDA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE KN D+ + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKNEDMAAANAMASHLRKISAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDGEVAQIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|229845478|ref|ZP_04465607.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 6P18H1] gi|229811581|gb|EEP47281.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 6P18H1] Length = 459 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVERMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDTEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWRKQ 459 >gi|293390637|ref|ZP_06634971.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951171|gb|EFE01290.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 469 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 184/483 (38%), Positives = 265/483 (54%), Gaps = 46/483 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 9 PNMLKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLG 68 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + +TYVRNITD+DDKII+RA + + + + + KD L L P Sbjct: 69 YD--LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVVEMYKDFDALNILRPDF 120 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT+HIP++I +++ +I GHAY A+ +++FD S +YG SR+ +++ + G R+ Sbjct: 121 EPRATHHIPEIIDIVEKLIQRGHAYVADNGDVMFDVESFKDYGKLSRQDLEQLQAGARIE 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL Sbjct: 181 INEIKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 241 MFPHHENEIAQSCCAHG-NQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVLN------- 292 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAV 351 + A +R +L HYR ++++ + L A L + + A Sbjct: 293 HYDAESVRYFLLTAHYRSQLNYSEENLNLAHGALERLYTALRGIDKSAVAFGGENFVDAF 352 Query: 352 LSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVC 397 A+ +D NT +A+ L ++ARE K + L A ILG+ + Sbjct: 353 REAMDDDFNTPNALSVLFEMARELNKLKTEDMAKANGLAARLRELAAILGLLQLDPEQFL 412 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + ++ IE L+++R K +++AD R L G ILED G T W Sbjct: 413 QAGSDEGEVAKIEALIKQRNEARTAKDWAAADAARNALTKMGIILED------GPNGTTW 466 Query: 458 KQK 460 +++ Sbjct: 467 RKQ 469 >gi|110640787|ref|YP_668515.1| cysteinyl-tRNA synthetase [Escherichia coli 536] gi|123344273|sp|Q0TKB5|SYC_ECOL5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110342379|gb|ABG68616.1| cysteinyl-tRNA synthetase [Escherichia coli 536] Length = 461 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-LYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|298693861|gb|ADI97083.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 466 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKSGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|49482759|ref|YP_039983.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|295427067|ref|ZP_06819703.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] gi|56749424|sp|Q6GJD9|SYC_STAAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49240888|emb|CAG39555.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|295128855|gb|EFG58485.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 466 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N + I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQTVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R ++ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFVISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|152969054|ref|YP_001334163.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578467|ref|YP_002239997.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae 342] gi|262041635|ref|ZP_06014829.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936751|ref|YP_003440810.1| cysteinyl-tRNA synthetase [Klebsiella variicola At-22] gi|187629829|sp|A6T5R2|SYC_KLEP7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710845|sp|B5Y0K6|SYC_KLEP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150953903|gb|ABR75933.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567525|gb|ACI09301.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae 342] gi|259041024|gb|EEW42101.1| cysteine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891460|gb|ADC59778.1| cysteinyl-tRNA synthetase [Klebsiella variicola At-22] Length = 461 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQVDDAEVAEIESLIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|189423475|ref|YP_001950652.1| cysteinyl-tRNA synthetase [Geobacter lovleyi SZ] gi|229558717|sp|B3E1P0|SYC_GEOLS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189419734|gb|ACD94132.1| cysteinyl-tRNA synthetase [Geobacter lovleyi SZ] Length = 487 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 193/507 (38%), Positives = 251/507 (49%), Gaps = 73/507 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + F + MYVCG TVYDF HIG+AR IVFD++YR LR+ + Sbjct: 3 LRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RN TDIDDKII RA QE I + F +D RL L PT +P+ Sbjct: 62 -VTYIRNYTDIDDKIINRANQE------GTDYRTIADRYIATFDEDMDRLGMLRPTIEPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI +I +IQ +I +GHAY + ++ F + P Y S R +D+ G RV Sbjct: 115 ATDHIEDIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK S P EP WESPWG+GRPGWHIECSAMS +LG FDIHGGG DL+FPH Sbjct: 175 KRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + W+HNGF+N+ KMSKS GNF TI E+LE + Sbjct: 235 HENEIAQSEGANGC-QFVKYWLHNGFVNINSEKMSKSLGNFFTIREVLEL-------FDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------------ 346 +R +L HYR P+D++ Q L EA+ LS+ + + Sbjct: 287 ETLRFFILQAHYRSPLDYSDQNLREAQAGLSRIYEALAALDQALEKPATAIHLPASAAEF 346 Query: 347 ------IDPAVLSALYNDLNTVSAIQALHKLARESTK---------------NHDLLPIF 385 + P A+ +D NT A+ L R + L Sbjct: 347 AEKVAGLLPRFREAMDDDFNTAQALGTLFDSIRTLNRLLAEGGGSSSASRADLEQLRAAV 406 Query: 386 NASAHILGI------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG+ E K + IE L+ ER K K F +D IR Sbjct: 407 TEIGAVLGLFRIKPSDWLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDEIRD 466 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 L S+ L D + T WK K Sbjct: 467 YLLSRDIQLVDT------PQGTAWKVK 487 >gi|187734096|ref|YP_001879221.1| cysteinyl-tRNA synthetase [Shigella boydii CDC 3083-94] gi|229558790|sp|B2TTB3|SYC_SHIB3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187431088|gb|ACD10362.1| cysteinyl tRNA synthetase [Shigella boydii CDC 3083-94] gi|320174878|gb|EFW49998.1| Cysteinyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112] gi|320186200|gb|EFW60940.1| Cysteinyl-tRNA synthetase [Shigella flexneri CDC 796-83] gi|332098469|gb|EGJ03435.1| cysteinyl-tRNA synthetase [Shigella boydii 3594-74] Length = 461 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L + L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|290510194|ref|ZP_06549564.1| cysteinyl-tRNA synthetase [Klebsiella sp. 1_1_55] gi|289776910|gb|EFD84908.1| cysteinyl-tRNA synthetase [Klebsiella sp. 1_1_55] Length = 461 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQVDDAEVAEIESLIQQRLNARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|253999955|ref|YP_003052018.1| cysteinyl-tRNA synthetase [Methylovorus sp. SIP3-4] gi|253986634|gb|ACT51491.1| cysteinyl-tRNA synthetase [Methylovorus sp. SIP3-4] Length = 456 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 182/476 (38%), Positives = 258/476 (54%), Gaps = 43/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LKIYNSLAREKQTFVPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRTSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA++ ++I +TS+ +D RL + P +P+ Sbjct: 61 -VTYVRNITDIDDKIIKRAQEN------GESIQALTSRFITAMDEDAARLGVMRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I +I G AY A+ ++ + SS YG S + +++ + G RV Sbjct: 114 ATEHITGMLDMIAALIEKGFAYPADNGDVFYSVSSFAGYGKLSGKSLEDLRAGERVEIDQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAM + +LG FDIHGGG DL FP Sbjct: 174 YKRDPMDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMGACHLGPHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 234 HHENEIAQSEAANGC-TFVNYWMHNGFIRVDDEKMSKSLGNFFTIRQVLE-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVLS 353 A V+R +L YR P++++ L +A L++ + + Sbjct: 286 AEVVRFFILRAQYRSPLNYSDHHLDDARQALTRLYTALRGLALPTFTIDWQQPQAARFKA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG----------IEVCKEHLNK 403 A+ +D NT A L +LA E + L A E Sbjct: 346 AMDDDFNTSEAFAVLFELASEVNRTASLADAALLKALAGLLGLLQRDPETFLQGGESAQG 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+ +Q RL + K F+ AD IRKQL +G +LED + T W++ Sbjct: 406 RSADEIEQFIQLRLQARQSKNFAEADRIRKQLADEGILLEDS------PQGTSWRR 455 >gi|260582005|ref|ZP_05849800.1| cysteinyl-tRNA synthetase [Haemophilus influenzae NT127] gi|260094895|gb|EEW78788.1| cysteinyl-tRNA synthetase [Haemophilus influenzae NT127] Length = 459 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 181/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGADQSAVAFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKAEDVEKANGLAARLRELGAILGLLQQEPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 N + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SNDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWRKQ 459 >gi|261868784|ref|YP_003256706.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414116|gb|ACX83487.1| cysteinyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 469 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 185/483 (38%), Positives = 265/483 (54%), Gaps = 46/483 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +K++NTL R+ F+ I I MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 9 PNMLKLFNTLTREKEIFKPIHAGKIGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRYLG 68 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + +TYVRNITD+DDKII+RA + + + + + KD L L P Sbjct: 69 YD--LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVVEMYKDFDALNILRPDF 120 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT+HIP++I ++Q +I GHAY A+ +++FD S +YG SR+ +++ + G R+ Sbjct: 121 EPRATHHIPEIIDIVQKLIQRGHAYVADNGDVMFDVESFKDYGKLSRQDLEQLQAGARIE 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG+ FDIHGGG DL Sbjct: 181 INEIKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKQLGEHFDIHGGGSDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 241 MFPHHENEIAQSCCAHG-NQYVNYWLHSGMIMVDKEKMSKSLGNFFTIRDVLN------- 292 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAV 351 + A +R +L HYR ++++ + L A L + A Sbjct: 293 HYDAESVRYFLLTAHYRSQLNYSEENLNLAHGALERLYTALRGTDKSAVAFGGENFVDAF 352 Query: 352 LSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVC 397 A+ +D NT +A+ L ++ARE K + L A ILG+ + Sbjct: 353 REAMDDDFNTPNALSVLFEMARELNKLKTEDMAKANGLAARLRELAAILGLLQLDPEQFL 412 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +++ IE L+++R K +++AD R L G ILED G T W Sbjct: 413 QAGSDEDEVAKIEALIKQRNESRATKDWAAADAARNALTEMGIILED------GPNGTTW 466 Query: 458 KQK 460 +++ Sbjct: 467 RKQ 469 >gi|152980026|ref|YP_001353798.1| cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|166200150|sp|A6SZV1|SYC_JANMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|151280103|gb|ABR88513.1| Cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 464 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 185/481 (38%), Positives = 257/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F I+P +RMYVCG TVYD+ HIG+AR M+VFD++ R LR E Sbjct: 4 LKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + ++IS +T + +D L P H+PR Sbjct: 63 -VNYVRNITDIDDKIIKRAAEN------GESISALTQRFIDAMDEDAAALGVQKPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN++PQM+ LI+ + +G AY++ + ++ + P YG S + +D+ + G RV Sbjct: 116 ATNYVPQMLGLIEALERNGLAYKSSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK S EP W S WG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 176 GKRDPLDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+L Sbjct: 236 QFPHHENEIAQSEGAS-QHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLA------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------- 350 + + V+R +L HYR ++++ L +A L++ A Sbjct: 288 KYDSEVVRFFILRAHYRSQLNYSDAHLDDARNALTRMYTALKGVAPDQAALDMTEAHALR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEV----------CK 398 A+ +D NT A+ L +LA E K L A I+G+ Sbjct: 348 FAEAMNDDFNTPLAVAVLFELANEINKTKSPALARQLVGLAGIVGLLQRPAQQFLHAGLA 407 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + + + ++ R+ K K F+ AD IR +L KG ILED +T W+ Sbjct: 408 NGEDGEMETFVVEQIEARVNAKKAKNFAEADRIRAELLEKGIILEDKPGG-----LTEWR 462 Query: 459 Q 459 + Sbjct: 463 R 463 >gi|332978776|gb|EGK15466.1| cysteine--tRNA ligase [Psychrobacter sp. 1501(2011)] Length = 508 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 189/508 (37%), Positives = 258/508 (50%), Gaps = 72/508 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIY+++ F+ + + MYVCG TVYD+ HIG+AR M+ FDV+ R LR+ Sbjct: 22 QATLKIYDSMTTNKRSFEPLQVGKVGMYVCGMTVYDYCHIGHARVMVAFDVVSRWLRHLG 81 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII RA + + I +T + +D L C +P Sbjct: 82 FD--VNYVRNITDIDDKIIARANEN------GEEIGQLTERFITAMHEDAAALGCESPDA 133 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI M+ +I + HAY A N ++ + + YG S+RK+++ + G+RV Sbjct: 134 EPRATQHIDDMLQMIGTLEQKEHAYAASNGDVYYAVDTFEGYGKLSKRKLEDLQAGSRVD 193 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNP DF+LWK + EP W+S WG GRPGWHIECSAMS+ LG FDIHGGG DL Sbjct: 194 VDTDKKNPFDFVLWKAAKAGEPQWDSSWGGGRPGWHIECSAMSTKCLGNSFDIHGGGHDL 253 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A AN W+H GF+N++G KMSKS GNF TI E++E Sbjct: 254 QFPHHENEIAQSEAATGC-TYANNWMHVGFINVDGEKMSKSLGNFFTIREVME------- 305 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGII 347 + IR +L +HYR ++F+ L EA L++ Q + S+ I Sbjct: 306 KFHPETIRFFILSSHYRSQVNFSDAALKEAHSGLTRVYQALKAAEAVLDTPVNAQSEATI 365 Query: 348 DPA------------VLSALYNDLNTVSAIQALHKLAREST-------------KNHDLL 382 D A + A+ +D NT AI L LA+E K Sbjct: 366 DTASIDSEIRGYSANFIKAMNDDFNTPQAISVLFSLAKEVNKLARETENDQATAKLKAAA 425 Query: 383 PIFNASAHILGI------EVCKEHL-----NKNISIAIEKLVQERLILLKMKKFSSADYI 431 A L I E + H+ + I+ L+QER+ K F+ AD I Sbjct: 426 VTLKGLAGTLNIGQVKPTEFLQAHIGSVDEEQMTDEQIDTLIQERIDAKANKNFARADEI 485 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R L+ LED K + T W++ Sbjct: 486 RNLLQQNNIELEDSK------QGTTWRR 507 >gi|330686235|gb|EGG97847.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU121] Length = 466 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLIKRSKE------LNESVPEIADKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T +YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKKLVDEGYAYESNGDVYFRTRQFKDYGKLSHQSIDDLKVGARIEAGDQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTSK 344 V+R M+ HYR PI++ ++ ++ A+ L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVSAAKSGLERIRNSYQLIEEREAIATDIDNQEEYINQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +A+ A + LA+ + + + ++ F + +LG Sbjct: 346 DQILENFEAVMDDDFNTANAVTAWYDLAKLANRYVLENVTSSKVIAQFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + IE+L++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLKGNQQDDLLDEEIEQLIEERNEARKNKDFARADEIRDHLKEQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|168798100|ref|ZP_02823107.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC508] gi|189379362|gb|EDU97778.1| cysteinyl tRNA synthetase [Escherichia coli O157:H7 str. EC508] Length = 461 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKHARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKVEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|295108532|emb|CBL22485.1| cysteinyl-tRNA synthetase [Ruminococcus obeum A2-162] Length = 469 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 249/492 (50%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF ++ +RMYVCGPTVY+ HIGNARPMI+FD + R L Y E Sbjct: 1 MKLFNTMSRRKEEFVPLEEGKVRMYVCGPTVYNLIHIGNARPMIIFDTVRRYLEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVSSEEISQRYIAECKKDMAGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ +I G+AY A+ + F YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIDMIQTLIDKGYAYPVADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLQVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPFWKSPWCDGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS C + + A W+HN FLN++ RKMSKS GNF T+ ++ G Sbjct: 233 VFPHHENEIAQSECCNGV-PFAKYWMHNAFLNIDNRKMSKSLGNFRTVRQI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------------ 342 + V+R ML HYR P++F+ + ++ L + + Sbjct: 285 QYDLQVLRFFMLNAHYRSPLNFSADLMESSKNALERITDAAARLRDRQAAASVQEASEDE 344 Query: 343 -----SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 + A+ +D NT A+ A+ +L + N L + Sbjct: 345 KKMMQEEAAFVTKFEEAMDDDFNTADALAAVFELVKFGNTNVQEGSSAEFAAHTLEVMTK 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG+ + K+ + + IE L+ ER K K F+ AD IR L KG L+D + Sbjct: 405 LCDVLGLILDKKE--EILDEEIENLIAERQAARKAKDFARADEIRGLLLDKGIELKDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|152979432|ref|YP_001345061.1| cysteinyl-tRNA synthetase [Actinobacillus succinogenes 130Z] gi|187629819|sp|A6VQ79|SYC_ACTSZ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150841155|gb|ABR75126.1| cysteinyl-tRNA synthetase [Actinobacillus succinogenes 130Z] Length = 459 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 183/479 (38%), Positives = 256/479 (53%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I+ + + MYVCG TVYD H G+ R + FDV+ R LR+ Sbjct: 2 LKIFNTLTREKEEFKPINQNQVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRFLGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVERMIAEMHKDFDALNILRPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I ++ ++ GHAY A+ +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVDALLQRGHAYLAADGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+S LG FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNSKELGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA E N W+H G L + KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDGE-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDILT-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---------SKGIIDPAVLSA 354 A +R L YR +D++ + + A L + ++ A A Sbjct: 286 AESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCDWNSELPAQDQYVGAFKDA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCKEH 400 + +D NT A+ L +LARE K + L A +LG+ + Sbjct: 346 MDDDFNTPGALAVLFELAREINKLKAENPAQANHLAARLKHLAGVLGLLEQDPEAFLQGG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+++R K +++AD R L+ G +LED G T W++ Sbjct: 406 AENEEVGKIEALIKQRNDARAEKNWAAADAARDALKEMGVVLED------GANGTSWRK 458 >gi|260887698|ref|ZP_05898961.1| cysteine--tRNA ligase [Selenomonas sputigena ATCC 35185] gi|330838629|ref|YP_004413209.1| cysteinyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] gi|260862578|gb|EEX77078.1| cysteine--tRNA ligase [Selenomonas sputigena ATCC 35185] gi|329746393|gb|AEB99749.1| cysteinyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] Length = 476 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 166/495 (33%), Positives = 251/495 (50%), Gaps = 61/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ EF+ ++P +Y CG T Y+ HIGNARP + +DV+ R L Sbjct: 2 LRVYNTLTREKEEFKPLEPGKASIYCCGVTPYNDPHIGNARPFVTWDVVRRYLEKKGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII RA++ + + ++ K L PR Sbjct: 60 AVHYVQNFTDIDDKIIRRAKE------AGETWKELADHYIAEYFKAIDALNVRRADAYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HI ++ +I+ +I G+AY + ++ + YG S R +D+ + G RV Sbjct: 114 VSEHIADVLAVIEKLIEKGYAYALDGDVYYSVERFAGYGKLSGRSLDDMQAGARVGVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK + P EP W+SPWG+GRPGWHIECS MS YLG+ FD HGGG DLIFPH Sbjct: 174 KHHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSTMSMKYLGETFDFHGGGSDLIFPH 233 Query: 245 HENEIAQSCCADR-IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HENEIAQ+ A W+HNGF+ + KMSKS NF T+ ++LE + Sbjct: 234 HENEIAQAQACTGDDHSFARYWLHNGFITIHDEKMSKSKNNFFTVKDILE-------KYA 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---------------- 347 V+R ++ THYR P+DFT +RL EA+ L++ + + + Sbjct: 287 GEVVRFFIVQTHYRSPLDFTDERLVEAKTSLARLKNSWDNAAELSSRKDESSGSAKSLLA 346 Query: 348 -----DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIFN 386 A A+ +D NT AI L L++E ++ + ++ Sbjct: 347 AAMEAKAAFYEAMDDDFNTALAISHLFSLSKEINIYYNEVTTGAAAFDAANFAKVRAVYA 406 Query: 387 ASAHILGIEVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A ++GI KE + + +E L+ R + K ++ AD++R +L+++G ++ED Sbjct: 407 EMAEVIGIFEAKEEKAADGLVDSLMELLLNLRQKAREEKNWALADHLRDELKARGVVIED 466 Query: 445 YKNPDNGQRMTRWKQ 459 + RWK+ Sbjct: 467 T------PQGARWKR 475 >gi|303228928|ref|ZP_07315738.1| cysteine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] gi|302516342|gb|EFL58274.1| cysteine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] Length = 482 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 248/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 2 REITVYNTMTRQKEVFTPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E A +I ++ + + L Sbjct: 62 K--VTYVQNFTDVDDKIINTSNGE------GVAWDVIANRYIDSYFEVMDALGVERADVY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HIP ++ +I+ +I G+AYE + ++ F +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIPDILKMIETLIDKGYAYELDGDVYFSVEKFDHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPFWESPWGNGRPGWHIECSAMSQKYLGEEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGHHPSVKYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + + Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLGTAIENLLYLEKCEAGPCDDAQRLL 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + +A+ +D NT A ++ LA+E + ++ IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQVVTGREGVVCQDAIAEVKRIF 406 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G +E E + E+L+ R + K+++ AD IR +L G Sbjct: 407 KFMTEVIGVLEKAWEGNTGADAAEYEQLMDVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED RWK++ Sbjct: 467 TIEDSPT------GARWKKR 480 >gi|283769685|ref|ZP_06342577.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] gi|283459832|gb|EFC06922.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] Length = 471 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 262/483 (54%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 5 KMITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T Sbjct: 65 N--VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSN 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ Sbjct: 117 PRVMDHMEDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGILSHQSIDDLKVGARIDAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 HK++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL F Sbjct: 177 EHKEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEV 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------T 342 V+R M+ HYR PI++ ++ + A L + + Sbjct: 289 DPDVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYID 348 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHI 391 I + + +D NT +AI A + LA+ + K + +++ F A + + Sbjct: 349 QIDAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED Sbjct: 409 LGVPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGVRF 468 Query: 452 QRM 454 +R Sbjct: 469 KRG 471 >gi|120554762|ref|YP_959113.1| cysteinyl-tRNA synthetase [Marinobacter aquaeolei VT8] gi|187629847|sp|A1U1Q7|SYC_MARAV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120324611|gb|ABM18926.1| cysteinyl-tRNA synthetase [Marinobacter aquaeolei VT8] Length = 463 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 262/482 (54%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL ++ F+ ++P +RMYVCG TVYD+ H+G+AR ++ FDV+ R LR+ + Sbjct: 1 MRIYNTLTQQKEAFKTLEPGKVRMYVCGMTVYDYCHLGHARVLVAFDVVTRYLRHRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ RA + + + +T + + +D +L L+P +PR Sbjct: 60 -VHYVRNITDIDDKILRRADEN------GEVYTDLTDRMIRAMHEDEAKLGVLSPNEEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +I +IQ +I GHAY A+ ++ F S P+YG S++K+++ G RV + Sbjct: 113 ATAFIDDIIAMIQKLIAGGHAYAADNGDVYFAVESFPDYGKLSKKKLEDLVAGARVDVQE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF LWK + P E W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 173 AKRSPADFALWKAAKPGEVSWQSPWGEGRPGWHIECSAMSTKCLGDTFDIHGGGPDLLFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + W+H G + + KMSKS GNF TI E+LE +P Sbjct: 233 HHENEIAQSECATG-HTFVHTWMHAGAIRVNKEKMSKSLGNFFTIREILE-------KYP 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVLS 353 A V+R ++ +HYR +D++ L EA L+K + ++ D Sbjct: 285 AEVVRYFLVSSHYRSQVDYSEDNLAEAGRTLTKLYHALRGIVPAKEADVAETDHDRRFAE 344 Query: 354 ALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNASAHILGIEVCKEHL--- 401 + +D NT AI LH +A + + +LG+ Sbjct: 345 VMDDDFNTAGAIAVLHAVANDINHYRREGDEEAAKRSAAVLVRLGAVLGLLQQNPEAFFQ 404 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 ++ + IE ++Q R K K F+ AD IR L KG IL+D + T W Sbjct: 405 ADTGSELTAEDIEAMIQARADARKAKDFAEADRIRDDLLEKGIILDDSR------EGTTW 458 Query: 458 KQ 459 ++ Sbjct: 459 RR 460 >gi|296313701|ref|ZP_06863642.1| cysteine--tRNA ligase [Neisseria polysaccharea ATCC 43768] gi|296839719|gb|EFH23657.1| cysteine--tRNA ligase [Neisseria polysaccharea ATCC 43768] Length = 475 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 256/490 (52%), Gaps = 58/490 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 6 IYNTLTRQKEPFTPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGY--PL 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P+AT Sbjct: 64 TYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDANALGVLRPDIEPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHK 185 +IPQMI +I+ +I + AY A N ++ + YG S + +D+ + G RV K Sbjct: 118 ENIPQMIAMIETLIQNSKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFK 177 Query: 186 KNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 ++P DF+LWK + EP WESPWG GRPGWHIECSAMS + LG FDIHGGG DL FPHH Sbjct: 178 RDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLLGDTFDIHGGGADLQFPHH 237 Query: 246 ENEIAQSCCADRIE---------------KTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 ENEIAQS A W+HNGF+ ++G KMSKS GNF TI E Sbjct: 238 ENEIAQSVGASGHSCGHNHAQTHYGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIRE 297 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------- 340 +L + + V+R +L HYR P++++ L +A+ L++ T Sbjct: 298 VL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAAFD 350 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---- 393 S + +A+ +D TV A+ L +LA E K +D L A I+G Sbjct: 351 LSENANGYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAHLAGCLKALGGIIGLLQR 410 Query: 394 --IEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 IE + + + I+ L+ R K + +D IR L ILED Sbjct: 411 DPIEFLQGGAVSDGLSNEEIDDLIARRKQARADKNWVESDRIRDLLNEHKIILEDN---- 466 Query: 450 NGQRMTRWKQ 459 T W++ Sbjct: 467 --AGGTTWRR 474 >gi|228475261|ref|ZP_04059986.1| cysteine--tRNA ligase [Staphylococcus hominis SK119] gi|228270726|gb|EEK12135.1| cysteine--tRNA ligase [Staphylococcus hominis SK119] Length = 466 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEAFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I + + F +D L T PR Sbjct: 60 TVDYVSNFTDVDDKLINRSKE------LNESVPEIADRYIKAFYEDVGALNVKRATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIEFIKQLVDDGYAYESNGDVYFRTRQFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G+GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGQGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGIIDP- 349 V+R M+ HYR PI++ ++ + A+ L + + T ID Sbjct: 286 DVLRFFMISVHYRSPINYNLELVNAAKSGLERIRNSYQLIKEREAIATDLETQTDYIDQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D NT +A+ A + L++ + K ++ + +LG Sbjct: 346 NDILKQFEAVMDDDFNTANAVTAWYDLSKLANKYVLENTTSTQVIQRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLEGKENDVLLDEDIEKLIEERNEARKNKDFARADEIRDTLKEQNIILEDTPQGVRFRR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|152996132|ref|YP_001340967.1| cysteinyl-tRNA synthetase [Marinomonas sp. MWYL1] gi|189082069|sp|A6VX53|SYC_MARMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150837056|gb|ABR71032.1| cysteinyl-tRNA synthetase [Marinomonas sp. MWYL1] Length = 460 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 176/480 (36%), Positives = 255/480 (53%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K F+ I+ + MYVCG TVYDF HIG+AR MI FDV+ R +R+ E Sbjct: 2 LKIYNTLSGKKEIFKPIEEGKVGMYVCGNTVYDFCHIGHARAMISFDVISRFIRHLGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N++ +T + +D RL P +P+ Sbjct: 61 -LNYVRNITDVDDKIIKRAEEN------NESTQSLTERMIAAQREDELRLGNKMPDREPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I ++Q +I G AY+ + ++ + + +YG + RK+++ G R+ + Sbjct: 114 ATEFMQEIIDMVQVLIDKGFAYQGTSGDVYYRATKFKDYGKLNNRKLEDMLAGARIDVEV 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF+LWK++ E W SPWG GRPGWHIECSAMS++ LG FDIHGGG DL FP Sbjct: 174 AKEHPADFVLWKQAKAGEVSWSSPWGEGRPGWHIECSAMSTNCLGSHFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N W+H G + + KMSKS GNF T+ ++L + Sbjct: 234 HHENEIAQSEAATGKE-YVNYWMHCGAVRVNNEKMSKSLGNFFTVRDVLA-------KFN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 V+R M+ + YR ID++ Q L EA++ L + + + + A+ Sbjct: 286 PEVVRYLMVSSQYRSAIDYSDQSLLEAKVALERLYTALRQQQVAESFEPTVFTERFEEAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH------- 400 +D NT A+ L +L RE K L + A +LG+ Sbjct: 346 KDDFNTAVAVSVLFELVRELNKAKTEDANKASLLAAELRSLAELLGLLYQDPEYFLQNST 405 Query: 401 -LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +AI+ L+ ER K K F+ +D IR +L S+G L D + T W + Sbjct: 406 VSEGLGEVAIQALIDERTQARKDKNFARSDEIRDELASQGIELLDSR------EGTTWTR 459 >gi|302341971|ref|YP_003806500.1| cysteinyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] gi|301638584|gb|ADK83906.1| cysteinyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] Length = 483 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 188/504 (37%), Positives = 254/504 (50%), Gaps = 68/504 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNT R+ EF ++P +R+YVCG TVYD HIG+AR + FD + R + Sbjct: 1 MPLVVYNTQSRRKEEFIPLEPGVVRVYVCGVTVYDDPHIGHARCYVAFDAMVRH--FLAK 58 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRN TDIDDKII RA + + K + F +D L L P+H+ Sbjct: 59 GWRVNYVRNFTDIDDKIIRRAAESGLGW------RELADKYIESFRQDMAALDVLPPSHE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI +MI IQ ++ GHAY+ +++F S YG SRR +++ + G RV Sbjct: 113 PRATEHIAEMIATIQTLMAKGHAYQIEGGDVLFAVESFDGYGKLSRRNLEDMQAGARVEV 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNP DF+LWK S P EP W+SP G GRPGWHIEC+AMS YLG+ FDIHGGG DL+ Sbjct: 173 DPRKKNPMDFVLWKASKPGEPSWDSPLGPGRPGWHIECTAMSGKYLGQTFDIHGGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ A+ W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 233 FPHHENEIAQGEACTG-HPLAHYWLHNGFVRVNHEKMSKSLGNFFTIKDILKITR----- 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------QTSTSKGIIDPA----- 350 +RL +L HYR P+DF+ + EA L + Q + G +D A Sbjct: 287 --PEALRLFLLSKHYRSPLDFSDAAIKEAGAGLERLYTALQAAQERAAAGPLDAAGQALA 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPI----FNAS 388 + + +D NT AI AL LAR K LL + Sbjct: 345 AEIQALADEFEAGMDDDFNTARAIGALFGLARLGNKLAAEPDGPAKGPLLELCARRLREL 404 Query: 389 AHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 LG+ E + + + IE L+ +R K K F+ AD IR QL+ Sbjct: 405 GGRLGLLRIDPAEFFRGAAGQTATQGGVGAADIEALIAQRNQARKDKNFAEADRIRDQLK 464 Query: 437 SKGFILEDYKNPDNGQRMTRWKQK 460 + G L+D + T W+ + Sbjct: 465 AMGVTLQDS------PQGTTWRME 482 >gi|41203|emb|CAA39691.1| cysteine-tRNA ligase [Escherichia coli K-12] Length = 461 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A + + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAAVERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|320538832|ref|ZP_08038508.1| cysteinyl-tRNA synthetase [Serratia symbiotica str. Tucson] gi|320030992|gb|EFW12995.1| cysteinyl-tRNA synthetase [Serratia symbiotica str. Tucson] Length = 461 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 173/482 (35%), Positives = 247/482 (51%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ ID + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIDAGKVGMYVCGVTLYDLCHIGHGRTFVAFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TDIDDKII R+ + + +T + + D L P +PR Sbjct: 60 SLNYVRNVTDIDDKIIRRSAENA------ETCDQLTERMLAEMHADFDSLLIERPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I + Q +I HAY A N +++F S P YG S + +++ + G RV Sbjct: 114 ATQHIAEIIAITQRLIDRNHAYVASNGDVMFSIDSDPQYGLLSHQALEQLQAGARVEIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K NP DF+LWK S P EP W+SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKHNPMDFVLWKMSKPGEPSWQSPWGAGRPGWHIECSAMNCKQLGPHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSSCAHDGR-YVNYWMHSGMVMIDKEKMSKSLDNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------GIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARTALERLYTALRGADADAQPMGGDAFEARFRQA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-------- 398 + +D NT A L +LARE + + + A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFELAREVNRLKNEDRVAANGMAATLRKLAKVLGLLQQQPEQLLQNG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +N IE L+++R + K ++ AD R +L +LED + T W+ Sbjct: 406 AQVNGGEGAEIEALIKQRNEARETKNWALADVARDRLNEMNIVLED------APQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|162139463|ref|YP_001172566.2| cysteinyl-tRNA synthetase [Pseudomonas stutzeri A1501] gi|187631654|sp|A4VL73|SYC_PSEU5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 461 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 187/478 (39%), Positives = 259/478 (54%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ ++ + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR+ + Sbjct: 3 LAIYNTLSKAKEPFRPLEGNKVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRHRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + + + +D TRL L P +PR Sbjct: 62 -VTYVRNITDIDDKIIRRASEN------GEPFQALVERMIAAMHEDETRLNVLRPDVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G AY N ++ + YG SRRKI++ K+G R+ Sbjct: 115 ATDHIAGMHTMIQTLIDKGFAYAPGNGDVYYRVGKFVGYGKLSRRKIEDLKIGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 175 AKEDPLDFVLWKGAKPGEPSWDSPWGPGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 235 HHENEIAQSEAATG-KLYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR PI+++ L EA+ L ++ PA +A+ Sbjct: 287 PEVVRYLLVSSHYRSPINYSEDSLREAKSALERFYNGLKGLPEAQPAGGDEFVARFAAAM 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-------EH 400 +D N+ A L ++ RE + + L A +LG+ + Sbjct: 347 DDDFNSPEACAVLFEMIREVNRLREADLAAAAALAARLKVLAGVLGVLQLEPDAFLQAGA 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+ RL K + +D IR QL + G +LED K T W+ Sbjct: 407 AGKVDAAEVEALIAARLAARAEKNWGESDRIRDQLTAMGVVLEDGK------GGTTWR 458 >gi|188590724|ref|YP_001919652.1| cysteinyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|251778988|ref|ZP_04821908.1| cysteine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|229558624|sp|B2UY90|SYC_CLOBA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188501005|gb|ACD54141.1| cysteinyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|243083303|gb|EES49193.1| cysteine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 470 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 166/492 (33%), Positives = 251/492 (51%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK EF I P ++MYVCGPTVY+F HIGN R IVFD + R L Y + Sbjct: 1 MRIFNTLTRKKEEFIPITPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYLEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I K +++ +D +L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKKANEE------GTTVKEIGDKYIKEYYEDADKLQIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---- 180 AT +I +I + +I G+AYE ++ F+T +YG S + I++ +MG Sbjct: 113 ATEYIEDIIDFVAQLIEKGYAYEVEGDVYFNTKKFNDYGKLSGQSIEDLQMGASNRTSSV 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF +WK P EP W+ PWG GRPGWHIECS M+ LG DIH GG+DL Sbjct: 173 ADERKKDPMDFAIWKSQKPGEPAWKCPWGMGRPGWHIECSCMAKKILGDTIDIHAGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE+AQS + + AN W+H+ ++N+ +KMSKS NF T ++L + Sbjct: 233 TFPHHENEVAQSEALTGV-QFANYWMHSAYVNINNQKMSKSLNNFFTARDIL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 + + V+R M+ HYR I+F+ L A+ + + + + V Sbjct: 285 EYDSDVVRFFMMSAHYRLQINFSKDLLDSAKASVERLYNAIGNLENLIDEVSRENMNEEE 344 Query: 352 --------------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 + + +D NT A+ L +L +++ N + L + Sbjct: 345 VRYLNSLNKYREKYIEKMDDDFNTADALTVLFELTKDTNTNINVNSSKELVNKALDLIRE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 LG+ ++ ++ IE L+Q+R K K F+ +D IR L+ +G +LED Sbjct: 405 LGAPLGL--LQKITKGSLEDEIESLIQQRQDARKNKDFALSDKIRDDLKDRGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + RWK+ Sbjct: 461 ----PQGVRWKK 468 >gi|15896425|ref|NP_349774.1| cysteinyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|21264018|sp|Q97ED6|SYC_CLOAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15026246|gb|AAK81114.1|AE007813_1 Cysteinyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|325510582|gb|ADZ22218.1| cysteinyl-tRNA synthetase [Clostridium acetobutylicum EA 2018] Length = 464 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 168/484 (34%), Positives = 251/484 (51%), Gaps = 54/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ RK EF + P+ ++MYVCGPTVY+F HIGNAR IVFD + + Y + Sbjct: 1 MKIYNTMTRKKEEFVPVKPNEVQMYVCGPTVYNFFHIGNARTFIVFDTVRKYFEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I +A E ++ + + +++ +D L T PR Sbjct: 60 -VNFIQNFTDIDDKMIAKANNE------GVSVKELGDRYIKEYYEDADGLNLERATCNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++I ++ + G+AYE + ++ F+T++ YG S + ++++ G + Sbjct: 113 ATEYIGKIIDFVKGLQDEGYAYEIDGDVYFNTNAFKEYGKLSGQNLEDRMAGATIAVDDR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+PADF LWK P EP WESPWG+GRPGWHIECS M+ LG DIH G +DLIFPH Sbjct: 173 KKSPADFALWKSEKPGEPSWESPWGKGRPGWHIECSCMARDLLGDTIDIHAGAIDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + W+H +LN+ KMSKS NF+T ++L + + A Sbjct: 233 HENEIAQSEARTG-KPFSKYWMHAAYLNINNEKMSKSLNNFLTARDIL-------KEYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 VIRL +L HYR P++FT + + A+ L + T + G + Sbjct: 285 EVIRLFLLSAHYRTPLNFTEESIEAAKTSLERLYNTINNLGSLLNNTAESNDDSEYLKAL 344 Query: 348 ---DPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHILGI 394 + + +D NT I + LA++ N + + LGI Sbjct: 345 DSYREKFIEKMDDDFNTADGISVIFDLAKDINININGKSSKAAVEKAISLMRELGKPLGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E N + I+ L+++R K K ++ AD IR L+ +G +LED Sbjct: 405 LQKVEKHN--LEDEIQNLIEQRQNARKNKDWALADKIRDDLKERGIVLEDT------PEG 456 Query: 455 TRWK 458 RWK Sbjct: 457 IRWK 460 >gi|313893308|ref|ZP_07826883.1| cysteine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313442204|gb|EFR60621.1| cysteine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 482 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 242/500 (48%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E + I ++ + + L Sbjct: 62 K--VTYVQNFTDVDDKIINTSNGE------GVSWDTIANRYIDSYFEVMDALGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +I +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIEDIIAMISTLIEKGYAYELDGDVYYSVDKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPAVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + + Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGPCDEAQRLL 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + +A+ +D NT A ++ LA+E + ++ IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQAVTGREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILGIEVCKEHLNKNI-SIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++GI N + E+L+Q R K++ AD IR +L G Sbjct: 407 KFMTEVIGILEKAWEGNTGANAAEYEELMQVILSVRQACRDQKQWGLADCIRDRLSEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED + RWK++ Sbjct: 467 TIEDS------PQGARWKKR 480 >gi|145635477|ref|ZP_01791177.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittAA] gi|145267242|gb|EDK07246.1| cysteinyl-tRNA synthetase [Haemophilus influenzae PittAA] Length = 459 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 261/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDTEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWRKQ 459 >gi|291522471|emb|CBK80764.1| cysteinyl-tRNA synthetase [Coprococcus catus GD/7] Length = 466 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 182/483 (37%), Positives = 256/483 (53%), Gaps = 52/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ++ +RMYVCGPTVY++ HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLTRRKDEFVPLEEGKVRMYVCGPTVYNYIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E S+I+ + ++ KD + TH P+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVDASVISERFIKEAQKDMADMNVKEATHHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +IQ ++ GHAY + + F T S +YG S++ ID+ + G R V Sbjct: 113 ATEEIDGMIDMIQTLVNKGHAYAVDGTVYFKTRSFKDYGKLSKKNIDDLEAGHREIKVNG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK EP W SPWG GRPGWHIECS MS YLG+ DIH GG DLI Sbjct: 173 EEGKEDPLDFVLWKPKKEGEPSWPSPWGDGRPGWHIECSVMSKKYLGEQIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + E A+ W+HNGFLN+ KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEACNDKE-FAHYWMHNGFLNINNVKMSKSLGNFFTVREIAE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK----------------- 344 + V+R ML HYR P++F+ + + + L + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAELMEASRNGLERILTAIDRLRTLNLQGDTCTAEENEQ 344 Query: 345 ----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAH 390 + +A+ +D NT AI A+ ++ + + + +L Sbjct: 345 MKVFDALVAKYEAAMEDDFNTADAISAIFEMVKAANIHVTETSTAAFRDQILSEIVRLCD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI+ K+ + + I+ L+ ER K K F+ AD IR +L +KG IL+D + Sbjct: 405 VLGIKTEKKE--ELLDDEIQALIDERQAARKAKNFARADEIRDELLAKGIILKDTREGVK 462 Query: 451 GQR 453 R Sbjct: 463 WSR 465 >gi|209527155|ref|ZP_03275668.1| cysteinyl-tRNA synthetase [Arthrospira maxima CS-328] gi|209492404|gb|EDZ92746.1| cysteinyl-tRNA synthetase [Arthrospira maxima CS-328] Length = 486 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 177/504 (35%), Positives = 252/504 (50%), Gaps = 69/504 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F ++P ++MY CG TVYD+ H+G+AR +DV+ R L + E Sbjct: 3 LKIYNTQTRQKETFTTLEPGKVKMYCCGVTVYDYCHLGHARSYTTWDVVRRYLEWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA+++ + ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRAKEQ------ESTMEAVSQRFIDAYFEDLRRLNVRDAKAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------ 178 T+HI ++ LI+ + GHAY + ++ ++ P+YG SRR++++ +MG Sbjct: 115 VTDHIKEIHQLIEQLTATGHAYAVDGDVYYNVGHFPDYGKLSRRQLEDLQMGASGRVAVA 174 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPETLKKKNPADFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMVRQLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELL+ Sbjct: 235 DLVFPHHENEIAQSEAATG-KTLARYWMHNGMVTVGGEKMSKSLGNFTTIRELLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------------- 337 R V+RL +L HYR+P+DFT + + A+ Sbjct: 289 -RPVDPMVVRLFILQGHYRKPLDFTDEAIASAKNGWETLKDGLLFAEQYGARLGWSADSS 347 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------- 383 P + A+ +D NT + L +LA+E + +LL Sbjct: 348 PSKYDTTEDALQRFRVAMDDDFNTPGGLAVLFELAKELRRQGNLLAHEGKTDTPSDRIYA 407 Query: 384 ---IFNASAHILGIEVCKE-----HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 A + G+E + IE LV++R K K ++ D IR QL Sbjct: 408 TWKTLVELAGVFGLEAVTQAQPPAATQGISDAEIEDLVKQRQSARKAKNYAEGDRIRDQL 467 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 ++ G L D + T W++ Sbjct: 468 QANGVTLIDRPGGE-----TLWRR 486 >gi|331090783|ref|ZP_08339630.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA] gi|330399891|gb|EGG79550.1| cysteinyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA] Length = 468 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 180/491 (36%), Positives = 250/491 (50%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF ++ ++MYVCGPTVY+ HIGNARPMIVFD + R Y E Sbjct: 1 MKVYNTLTRRKEEFVPLEEGKVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII++A +E + + I+ + + KD + T P Sbjct: 60 -VNFVSNFTDVDDKIIKKAIEE------GVSANEISQRYIAECKKDMEGMNVKPATKHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I ++I G+AYE N + F T YG S + +D+ + G R V Sbjct: 113 ATEEICGMIEMISDLIDKGYAYEKNGTVYFRTRKFEEYGKLSHKNLDDLQSGGRSLLVTG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++ DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL+ Sbjct: 173 EDEKEDSLDFVLWKPKKEGEPAWESPWCDGRPGWHIECSVMSKKYLGEQIDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HN FLN++ KMSKS GNF T+ E+ G Sbjct: 233 FPHHENEIAQSEAANGKE-FAKYWLHNAFLNIDNHKMSKSLGNFRTVREI-------GEK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------------P 338 + V+R ML HYR P++F+ + + L + Sbjct: 285 YDLQVLRFFMLSAHYRSPLNFSAALMESSANGLERILTAVANLKHLLGVVSEENMTAEER 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNAS 388 + A A+ +D NT AI ++ L + + L + Sbjct: 345 EQVKETENFVRAYEEAMEDDFNTADAIASIFDLVKFANTTTSAQSSKEYLQTLYDLIVKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + +LG+ V KE + ++ IE L++ER K + F AD IR +L KG ILED + Sbjct: 405 SDVLGLIVEKEE--EMLAEDIEALIEERQAARKERNFQRADEIRDELLKKGIILEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKK 467 >gi|303231487|ref|ZP_07318217.1| cysteine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] gi|302513830|gb|EFL55842.1| cysteine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] Length = 482 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 248/500 (49%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 2 REITVYNTMTRQKEVFTPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E A +I ++ + + L Sbjct: 62 K--VTYVQNFTDVDDKIINTSNGE------GVAWDVIANRYIDSYFEVMDALGVERADVY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HIP ++ +I+ +I G+AYE + ++ F +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIPDILKMIETLIDKGYAYELDGDVYFSVEKFDHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKPGEPFWESPWGNGRPGWHIECSAMSQKYLGEEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGHHPSVKYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + + Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLGTAIENLLYLEKCEAGPCDDAQRLL 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + +A+ +D NT A ++ LA+E + ++ IF Sbjct: 347 EKAKEYEEEFEAAMSDDFNTALATSSMFGLAKEINIYYQVVTGREGVVCQDAIAEVKRIF 406 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G +E E + E+L+ R + K+++ AD IR +L G Sbjct: 407 KFMTEVIGVLEKAWEGNTGADAAEYEQLMDVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED RWK++ Sbjct: 467 TIEDS------PAGARWKKR 480 >gi|294791947|ref|ZP_06757095.1| cysteine--tRNA ligase [Veillonella sp. 6_1_27] gi|294457177|gb|EFG25539.1| cysteine--tRNA ligase [Veillonella sp. 6_1_27] Length = 482 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 244/500 (48%), Gaps = 63/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++I +YNT+ R+ F + P +MYVCG T Y+ HIGNARP + +DV+ R +++ Sbjct: 2 REITVYNTMTRQKEVFNPVTPGEAKMYVCGVTPYNHPHIGNARPFVTWDVIRRYMKHVGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TD+DDKII + E + I ++ + + L Sbjct: 62 K--VTYVQNFTDVDDKIINTSNGE------GVSWDTIANRYIDSYFEVMDVLGVQRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + HI +I +IQ +I G+AYE + ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSTHIDDIIAMIQTLIDKGYAYELDGDVYYSVEKFEHYGELSGRTLDDMEAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK + EP WESPWG GRPGWHIECSAMS YLG FD HGGG DLIF Sbjct: 174 GRKKNPMDFALWKAAKHGEPYWESPWGNGRPGWHIECSAMSQKYLGTEFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGCSGQHPAVRYWLHNGFITINSEKMSKSLNNFFLVKDILE-------QY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +R +L THYR P+DF+ +RL EA L + + Sbjct: 287 SPDALRYFLLSTHYRSPLDFSDERLEEANKSLERLSTAIENLLYLEKCEPGSCDEAQRLL 346 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPIF 385 + A+ +D NT A ++ LA+E + ++ IF Sbjct: 347 EKAKAYEEEFEDAMSDDFNTALATSSMFGLAKEINIYYQAVTSREGVVCQEAIAEVKRIF 406 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQ----ERLILLKMKKFSSADYIRKQLESKGF 440 ++G +E E + E+L+Q R + K+++ AD IR +L G Sbjct: 407 KFMTDVIGVLEKAWEGNTGANAAEYEELMQVILSVRQACREQKQWALADCIRDRLAEIGI 466 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED + RWK++ Sbjct: 467 TIEDS------PQGARWKKR 480 >gi|116749069|ref|YP_845756.1| cysteinyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] gi|171460796|sp|A0LIR9|SYC_SYNFM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116698133|gb|ABK17321.1| cysteinyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] Length = 493 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 188/511 (36%), Positives = 256/511 (50%), Gaps = 79/511 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL + EF ++P ++ YVCG TVYD +HIG+AR IVFDV+YR LR+ E Sbjct: 3 LHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGFE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKII RA I + F +D L L P +P Sbjct: 62 -VTYVRNFTDVDDKIIRRAND------AGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPL 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++P MI +I+ ++ G AY+A ++ F+ P YG S R+I++ G RV Sbjct: 115 ATENVPGMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDAR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S P EP W+SPWG GRPGWHIECSAM S +LGK FDIHGGG DLIFPH Sbjct: 175 KRNPLDFVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + W+HNGF+N+ KMSKS GNF+TI ++L + Sbjct: 235 HENEIAQSEAAFGM-PFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVL-------QKVHP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 +R +L HYR P+DF+ + + EAE L + T + Sbjct: 287 ETVRFFVLSKHYRSPVDFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKALRGQ 346 Query: 345 --------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFN 386 + A A+ ND NT A+ L L R + D + Sbjct: 347 DPELFDQIAALSGAFREAMDNDFNTAQALGNLFSLQRHLQRFLDKFGRKQLKGPASALAR 406 Query: 387 ASAH-------ILGIEVCKEHLNKNI------------SIAIEKLVQERLILLKMKKFSS 427 A A +LG+ + + +E+ ++ R + K F+ Sbjct: 407 AGADAIRDHALVLGLLTREPEAFQAEQRSLKIKSTGLTEAEVERCIELRRQARQDKNFAE 466 Query: 428 ADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 AD +R+++E KG LED TRW+ Sbjct: 467 ADRLREEIEKKGIQLEDS------PAGTRWR 491 >gi|331003582|ref|ZP_08327079.1| cysteinyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412423|gb|EGG91814.1| cysteinyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167] Length = 469 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 182/490 (37%), Positives = 256/490 (52%), Gaps = 57/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL RK EF I+ ++MYVCGPTVY+ HIGNARPMI FD + R Y + Sbjct: 1 MKIFNTLSRKKEEFVPIEEGKVKMYVCGPTVYNLIHIGNARPMIFFDTVRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E S+I+++ + KD + L T P Sbjct: 60 -VNYVSNFTDVDDKIINKAIEEGVEA------SVISTRYIDECKKDMEAMNVLPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M +I ++I GHAY A + + F S +YG S + IDE + G R V Sbjct: 113 ATEEIDGMEEMIGSLIEKGHAYVAKDGTVYFRVKSFEDYGKLSHKNIDELQSGFREIKVK 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ DF+LWK EP W+SPW +GRPGWHIECS MS YLG DIHGGG DL Sbjct: 173 GEEDKEDSNDFVLWKPKKDGEPYWDSPWSKGRPGWHIECSVMSKKYLGDQIDIHGGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + AN W+HN FLN++ +KMSKS GNF T+ ++ E Sbjct: 233 IFPHHENEIAQSESASG-KSFANYWMHNAFLNIDNKKMSKSLGNFFTVRDISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------PQTSTSKGIIDPA 350 + V+R ML HYR P++F+ + + ++ L + + + + I D Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAELMEASKNSLERILTGVENIKDVQKRNNADAITDAE 344 Query: 351 -------------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI--- 394 + A+ +D NT AI A+ +L + S + + + +L I Sbjct: 345 LSNLEIAKVLKDKFVIAMDDDFNTADAITAIFELIKLSNTSLNEKSTVEYANGLLNIILP 404 Query: 395 -----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 + E + + IE L+++R K K F+ AD IR +L G +LED + Sbjct: 405 LCDTLGIITERKVEILDSEIEDLIEQRTSARKNKDFALADKIRNELLEMGIVLEDTR--- 461 Query: 450 NGQRMTRWKQ 459 +WK+ Sbjct: 462 ---EGVKWKR 468 >gi|312880084|ref|ZP_07739884.1| cysteinyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] gi|310783375|gb|EFQ23773.1| cysteinyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] Length = 467 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 186/486 (38%), Positives = 253/486 (52%), Gaps = 57/486 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN L R+ F +P +R YVCGPTVYDF HIGNARP IVFDVL R L + V Sbjct: 5 VYNDLTRRKEVFVPQNPGEVRFYVCGPTVYDFFHIGNARPFIVFDVLRRYLEHQGY--TV 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV+N TD+DDK+I RA + + ++ + + + +D L T PRAT Sbjct: 63 TYVQNFTDVDDKMIRRAAE------LGISVPELAERFIAAYFEDADALGVRRATVHPRAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 IP ++ LIQ I+ GHAY ++ FD S P YG S++ ++E + G RV K+ Sbjct: 117 EEIPAILELIQAILDRGHAYAVEGDVYFDVKSYPAYGVLSKQSLEELQSGARVEVDPRKR 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 +P DF LWK P EP W+SPWG GRPGWH+ECSAMS +LG+ D HGGG DLIFPHHE Sbjct: 177 HPLDFALWKAQKPGEPAWKSPWGMGRPGWHVECSAMSRRHLGETLDFHGGGCDLIFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS A + W+HNG+L ++ KMSKS GNF+T E + +P Sbjct: 237 NEIAQSEAATG-KPFVRYWVHNGYLMIDKEKMSKSLGNFLTAREAR-------KRFPPLA 288 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------------- 347 IRL ML HYR PI+F+ + L +A + T Sbjct: 289 IRLFMLSAHYRSPINFSEEGLMQATAAQERLRNGWTELEFALGHRSASAEPDGALRRMLR 348 Query: 348 --DPAVLSALYNDLNTVSAIQALHKLARESTK------NHDLLPI------FNASAHILG 393 L+AL +DLNT AI + + + + DL + F ILG Sbjct: 349 EGRERFLAALDDDLNTAGAIGVVFDVVKGVNSSLGERPDADLEALGQAKTFFLEVEDILG 408 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I +++ +++L+QER K + F+ AD IR +L ++G +LED + Sbjct: 409 ILGVAPE--ESLEEDVDRLIQERQAARKGRDFARADAIRDELLARGILLEDT------PQ 460 Query: 454 MTRWKQ 459 RWK+ Sbjct: 461 GPRWKR 466 >gi|260655864|ref|ZP_05861333.1| cysteine--tRNA ligase [Jonquetella anthropi E3_33 E1] gi|260629480|gb|EEX47674.1| cysteine--tRNA ligase [Jonquetella anthropi E3_33 E1] Length = 467 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 171/488 (35%), Positives = 249/488 (51%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN L R F + + Y CGPTVYD+ HIGNARP IVFDVL R L Y + Sbjct: 3 LSLYNDLTRNKELFVPLADGKVSFYSCGPTVYDYFHIGNARPFIVFDVLRRYLEYKGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I+RA ++ ++ + K + +D L ++ PR Sbjct: 62 -VTFVQNFTDIDDKMIDRANRD------GITVAQLAEKTIADYYEDADALGIKRASYNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT ++PQ+I L+Q +I GHAY + FD S P YG S++ +DE G R+ Sbjct: 115 ATEYMPQIIQLVQKLIDRGHAYAVGGTVYFDVKSFPQYGRLSKQNMDELLAGARIEVDDA 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK P EP W+SPWG+GRPGWHIECS MS+ LG DIH GG+DL FPH Sbjct: 175 KKCPLDFVLWKPQKPGEPAWDSPWGKGRPGWHIECSVMSTALLGDTIDIHSGGVDLTFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A + N W+HN ++ ++ KMSKS GNF+T E + + Sbjct: 235 HENEIAQAEAATG-KPFVNFWLHNEYILIDKEKMSKSLGNFLTAREAR-------KHYSP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------------------TSTSK 344 IR ML HYR P++F+ + L +A ++ + S + Sbjct: 287 LAIRAFMLSAHYRSPVNFSPEGLEQAGAMVERLRNCWSDLQFAKSRRDLSYDDASLSEAV 346 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNASAHIL 392 A+ +D NT A+ A+ ++ + + D F ++ Sbjct: 347 RQGREDFEEAMDDDFNTAGALGAVFEVVKAVNTHLKSSGALSGKGLDDAEKFFRDIEEVM 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + I+ LV++R K K F+ +D +R +L ++G +LED Sbjct: 407 GLLGLSHETDG--DAEIDALVEQRNAARKAKNFAESDRLRDELAARGIVLEDT------P 458 Query: 453 RMTRWKQK 460 + T+WK+K Sbjct: 459 QGTKWKRK 466 >gi|239636927|ref|ZP_04677925.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603] gi|239597475|gb|EEQ79974.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603] Length = 466 Score = 567 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 262/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VVYVSNFTDVDDKLIKRSKE------LNESVPEIADKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T +YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKKLVDEGYAYESNGDVYFRTRQFKDYGKLSHQSIDDLKVGARIEAGDQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTSK 344 V+R M+ HYR PI++ ++ ++ A+ L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVSAAKSGLERIRNSYQLIEEREAIATDIDNQEEYINQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +A+ A + LA+ + + + +++ F + +LG Sbjct: 346 DQILENFETVMDDDFNTANAVTAWYDLAKLANRYVLENVTSTNVIAKFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLKGNQQDDLLDEEIEKLIEERNEARKNKDFARADEIRDHLKEQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|24111894|ref|NP_706404.1| cysteinyl-tRNA synthetase [Shigella flexneri 2a str. 301] gi|30062010|ref|NP_836181.1| cysteinyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|61216306|sp|Q83M27|SYC_SHIFL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24050695|gb|AAN42111.1| cysteine tRNA synthetase [Shigella flexneri 2a str. 301] gi|30040254|gb|AAP15987.1| cysteine tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|313646855|gb|EFS11312.1| cysteinyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|332761515|gb|EGJ91797.1| cysteinyl-tRNA synthetase [Shigella flexneri 2747-71] gi|332768439|gb|EGJ98623.1| cysteinyl-tRNA synthetase [Shigella flexneri 2930-71] Length = 461 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+N DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNRMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|187932481|ref|YP_001884454.1| cysteinyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B] gi|229558625|sp|B2TIF6|SYC_CLOBB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187720634|gb|ACD21855.1| cysteine--tRNA ligase [Clostridium botulinum B str. Eklund 17B] Length = 470 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 166/492 (33%), Positives = 249/492 (50%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK EF I P ++MYVCGPTVY+F HIGN R IVFD + R L Y E Sbjct: 1 MRIFNTLTRKKEEFIPITPGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I++A +E + I K +++ +D +L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKKANEE------GTTVKEIGDKYIKEYYEDADKLQIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---- 180 AT +I +I + +I G+AYE ++ F+T +YG S + I++ +MG Sbjct: 113 ATEYIEDIIDFVAQLIEKGYAYEVEGDVYFNTKKFNDYGKLSGQSIEDLQMGASNRTSSI 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF +WK P EP W+ PWG GRPGWHIECS M+ LG DIH GG+DL Sbjct: 173 ADERKNDPMDFAIWKAQKPGEPAWKCPWGMGRPGWHIECSCMAKKILGDTIDIHAGGMDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENE+AQS + AN W+H+ ++N+ +KMSKS NF T ++L + Sbjct: 233 TFPHHENEVAQSEALTGMR-FANYWMHSAYVNINNQKMSKSLNNFFTARDIL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV--------- 351 + + V+R M+ HYR I+F+ L A+ + + + + V Sbjct: 285 EYDSDVVRFFMMSAHYRLQINFSKDLLDSAKASVERLYNAIGNLENLIDEVSRENISEEE 344 Query: 352 --------------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 + + +D NT A+ L +L +++ N + L + Sbjct: 345 VNYLNSLKKYREKYIEKMDDDFNTADALTVLFELTKDTNTNINVNSSKELVNKALNLIRE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 LG+ ++ ++ IE L+Q+R K K F+ +D IR L+ +G +LED Sbjct: 405 LGAPLGL--LQKITKGSLEDEIESLIQQRQDARKNKDFALSDKIRDDLKDRGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + RWK+ Sbjct: 461 ----PQGVRWKK 468 >gi|323490593|ref|ZP_08095798.1| cysteinyl-tRNA synthetase [Planococcus donghaensis MPA1U2] gi|323395685|gb|EGA88526.1| cysteinyl-tRNA synthetase [Planococcus donghaensis MPA1U2] Length = 467 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 171/489 (34%), Positives = 258/489 (52%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+N+L R+ EF ++ ++MYVCGPTVY++ HIGNARP+IV+D + R L+Y Sbjct: 1 MSIQIFNSLSRQKEEFIPLEEGKVKMYVCGPTVYNYIHIGNARPVIVYDTVRRHLQYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + I + + ++T L C Sbjct: 61 D--VKYVSNFTDVDDKLIKAANE------LGQEVPEIAERFIAAYFENTKALGCAEADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P T+H+ Q+I I +I G+AYE+ ++ + T YG S + +DE K+G RV Sbjct: 113 PLVTDHMAQIIEFIVALIEKGYAYESQGDVYYRTRKFDGYGKLSHQSVDELKIGARVETG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF+LWK + P E W+SPWG+GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 173 DKKEDELDFVLWKAAKPKEISWDSPWGKGRPGWHIECSVMAREHLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A+ W+HNG++N++ KMSKS NF+ +N++L + Sbjct: 233 PHHENEIAQSEAFTG-KPFAHYWMHNGYINIDNEKMSKSLNNFVLVNDIL-------KEL 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+++ Q + +A L + + Sbjct: 285 DPQVLRFFMLSVHYRHPINYSQQLVEDAVAGLERLRTAYANLKHRLSASADLGDHSDTWV 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 I A + + +D NT +AI +L L+R S + +F+ A Sbjct: 345 HKIEEIKTAFIETMDDDFNTANAISSLFDLSRLSNTYLLEKQTATSVLETFIAVFDELAG 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+ ++ + + +E L+ ER+ K + F+ AD IR + K ILED Sbjct: 405 ILGLPFNQQE--ELLDEEVEALMAERIEARKNRDFARADEIRDLFKEKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -AQGTRWKR 465 >gi|258513619|ref|YP_003189841.1| cysteinyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257777324|gb|ACV61218.1| cysteinyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 500 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 178/522 (34%), Positives = 258/522 (49%), Gaps = 87/522 (16%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ EF P + MYVCGPT Y+F H+GNARP++ FD + R L Y + Sbjct: 1 MLLYNTLSRQKEEFVPAIPGRVSMYVCGPTTYNFIHLGNARPLVFFDTVRRYLIYKGYQ- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII+RA +E S + K T+++ D T L + P+ Sbjct: 60 -VLYVQNFTDIDDKIIKRAAEEKL------DPSALAFKYTEEYYIDATSLNVMMADIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++H+ ++I L++ ++ G AY+++ ++ F+ +YG S R +++ G RV Sbjct: 113 VSDHMAEIIELVEKLVQKGFAYQSDGDVYFEVRRFKDYGKLSGRALEDMLAGARVEVNEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP W SPWG+GRPGWHIECSAMS YLG+ FD+HGGG DLIFPH Sbjct: 173 KRDPMDFALWKAAKPGEPSWNSPWGQGRPGWHIECSAMSLKYLGENFDMHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A E A W+HNGF+ + KMSKS GNF + E+L+ + Sbjct: 233 HENEIAQSEAATG-EPLARYWLHNGFITVNQEKMSKSLGNFFLVREILD-------KFSP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI------------------ 346 V+R +L THYR P+DF ++L E L + + G Sbjct: 285 EVVRFFLLGTHYRSPLDFDDEKLAVVEKGLDRIRTSIQLLGEACQRAGVDFSMINAKEKP 344 Query: 347 -------------------IDPAVLSALYNDLNTVSAIQALHKLARESTK---------- 377 I + A+ +D NT A+ +L +LA+E+ Sbjct: 345 ARVTSIIDTRHSSMKAFIKIKTSFEQAMEDDFNTALAVGSLFELAKETNILVQSLGPKIS 404 Query: 378 ------NHDLLPIFNASAHILGIE------------VCKEHLNKNISIAIEKLVQERLIL 419 +F +LGI E + + ++ L+ R Sbjct: 405 EQEKACLLQAAELFKLFNQVLGIFKEDLCTGYPLVTPVDESGDGMLEAVMQMLLDIRNEA 464 Query: 420 LKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461 K K ++ +D IR L+ ILED + TRWK++ Sbjct: 465 RKNKNWALSDRIRDALKDINVILEDT------PQGTRWKKQA 500 >gi|148254912|ref|YP_001239497.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] gi|166200130|sp|A5EHE7|SYC_BRASB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146407085|gb|ABQ35591.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 472 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 215/478 (44%), Positives = 297/478 (62%), Gaps = 29/478 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+T R+ F + +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTATREKRPFVPLHRNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITD+DDKI RA ++ P +P+N+AI +T +QF +D L CL PT + Sbjct: 61 AEHVTYVRNITDVDDKINARAARDFPGLPLNEAIRNVTELTERQFHEDVDALGCLRPTIE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKM 175 PRAT HI +M +I+ ++ G AY A + ++F +++ P YG+ + R +DE Sbjct: 121 PRATEHIAEMRDIIERLVAGGFAYVAEDHVLFSPAAMNAANKVLPRYGALANRSLDEMIA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFD 232 G RV +KK+ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FD Sbjct: 181 GARVDVAPYKKDATDFVLWKPSKPGEPSWPSPAGIAAEGRPGWHIECSAMSWKHLGETFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG+DL+FPHHENE+AQSCCA + AN+W+HNGFL +EG KMSKS GNF+TI E+L Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTARMANVWMHNGFLQVEGEKMSKSLGNFVTIREVL 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPA 350 WP V+RL ML THYR PID+T++ L E+ + W +T+ +G A Sbjct: 301 AD-------WPGEVVRLNMLKTHYRSPIDWTLRGLEESAKAVDDWYRTAGDLREGRPADA 353 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNH-DLLPIFNASAHILGIEVC--------KEHL 401 V+ AL +D+NT + LH L E+ D + F S +LG K+ Sbjct: 354 VIEALRDDINTPLMVAVLHGLRNEAASGGVDDVARFVGSLRLLGFLAEDAAQWRARKQQA 413 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + +E L+ ER K F +D +R +L + G +L+D K +G+ +T W+ Sbjct: 414 SGVDAAKVEGLIAERTAARARKDFKESDRLRDELAAMGVVLKDGK-GADGKPVTTWEM 470 >gi|28212192|ref|NP_783136.1| cysteinyl-tRNA synthetase [Clostridium tetani E88] gi|61216342|sp|Q890M4|SYC_CLOTE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28204636|gb|AAO37073.1| cysteinyl-tRNA synthetase [Clostridium tetani E88] Length = 465 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 170/488 (34%), Positives = 246/488 (50%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF + + MYVCGPTVY+F HIGN R IVFD + R L Y + Sbjct: 1 MKLYNTLTRQKEEFIPLKTGEVNMYVCGPTVYNFFHIGNGRTFIVFDTVRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I+RA E + + + ++ KD L T PR Sbjct: 60 -VKFVQNFTDIDDKMIKRANDE------GITVKELGERFIGEYYKDADSLNIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I ++ ++ G+AYE + ++ F T YG S + I++ + G R+ Sbjct: 113 ATEFMEEIIQFVKELVDKGYAYEIDGDVYFHTKRFNEYGKLSGQNIEDLQAGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+ DF +WK+ P EP WESPWG GRPGWHIECS M+ + LG DIH GG DLIFPH Sbjct: 173 KKDAMDFAIWKKQKPGEPAWESPWGMGRPGWHIECSCMAHNLLGDTIDIHAGGHDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + A W+H+ FLN++ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSECRTG-KPFAKYWMHSAFLNIDNKKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+RL ML HYR ++F+ + L A + + + + V Sbjct: 285 DVVRLFMLSAHYRAQLNFSEELLQSAMSAVERLYNAIYNLENLANEVKRNDLNEEEKKYI 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 + + +D NT AI + + R+ N L I Sbjct: 345 KKLDEYREKYIEKMDDDFNTADAIAVIFDMIRDINSNVKSDSSKKIIEYALSIIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ +++ I++L+ R K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQKSTEESVEDEIQQLIDRREKARTEKNWALADEIRDGLKERGILLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 457 PQGVRWKR 464 >gi|209363819|ref|YP_001423944.2| cysteinyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] gi|212212147|ref|YP_002303083.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] gi|212219210|ref|YP_002305997.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] gi|215919193|ref|NP_820470.2| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|218511865|sp|Q83BL7|SYC_COXBU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206584077|gb|AAO90984.2| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|207081752|gb|ABS78112.2| cysteinyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] gi|212010557|gb|ACJ17938.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] gi|212013472|gb|ACJ20852.1| cysteinyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] Length = 460 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 174/482 (36%), Positives = 258/482 (53%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI+N+L ++ F+ I+ +++YVCG TVYD+ HIG+ R I+FD++ R LR Sbjct: 1 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VT+VRNITDIDDKII+RA + ++ + + + Q +D L L+P + Sbjct: 61 E--VTFVRNITDIDDKIIKRAGENK------ESPAALAERFIQILHEDEKALRVLSPDQE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++P++I LIQ ++ + +AY N ++ FD +YG S R +DE + G RV Sbjct: 113 PRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEV 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK++ P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGGLDL Sbjct: 173 SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + + +W+H G L + KMSKS GN I+I E L + Sbjct: 233 FPHHENEIAQSEAGE-EKPFVKLWMHAGLLEINKEKMSKSLGNIISIREAL-------KE 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLS 353 V+R +L HYR P+ ++ + L + L ++ +++ Sbjct: 285 SDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKTSSYTDRFYE 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI------EVCK 398 A+ +D NT A L ++ RE + D L +I G+ + + Sbjct: 345 AMDDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQ 404 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + I+KL+ +R K + +AD IR QL G +ED + T W+ Sbjct: 405 GAKKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSD------GTSWR 458 Query: 459 QK 460 Q+ Sbjct: 459 QE 460 >gi|153209422|ref|ZP_01947398.1| cysteinyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165919402|ref|ZP_02219468.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 334] gi|187629807|sp|A9KBJ2|SYC_COXBN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120575359|gb|EAX31983.1| cysteinyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165916918|gb|EDR35522.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 334] Length = 458 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 174/480 (36%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L ++ F+ I+ +++YVCG TVYD+ HIG+ R I+FD++ R LR E Sbjct: 1 MKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RA + ++ + + + Q +D L L+P +PR Sbjct: 60 -VTFVRNITDIDDKIIKRAGENK------ESPAALAERFIQILHEDEKALRVLSPDQEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P++I LIQ ++ + +AY N ++ FD +YG S R +DE + G RV Sbjct: 113 ATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGGLDL FP Sbjct: 173 SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + +W+H G L + KMSKS GN I+I E L + Sbjct: 233 HHENEIAQSEAGE-EKPFVKLWMHAGLLEINKEKMSKSLGNIISIREAL-------KESD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R +L HYR P+ ++ + L + L ++ +++ A+ Sbjct: 285 VEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAM 344 Query: 356 YNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI------EVCKEH 400 +D NT A L ++ RE + D L +I G+ + + Sbjct: 345 DDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA 404 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I+KL+ +R K + +AD IR QL G +ED + T W+Q+ Sbjct: 405 KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSD------GTSWRQE 458 >gi|89075764|ref|ZP_01162152.1| cysteinyl-tRNA synthetase [Photobacterium sp. SKA34] gi|89048496|gb|EAR54071.1| cysteinyl-tRNA synthetase [Photobacterium sp. SKA34] Length = 460 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 179/481 (37%), Positives = 254/481 (52%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ F I P I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTRQKEAFTPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+ RNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFARNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHADFDALGMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A N +++F+ S +YG S++ +D+ + G RV Sbjct: 114 ATQFIAEIIALCERLIERGFAYVASNGDVMFEVSKYEDYGRLSKQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLN-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 PETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTSLRGLDTSIEAAGGEEFVARFKEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A + +ARE K L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVMFDMAREINRLKTDDVTKASALGSRMRELADVLGLLSQEPEAFLQGG 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+Q+RL K +++AD R +L + G ILED G + T W++ Sbjct: 406 AGEDDNVAEIEALIQQRLDARAAKDWAAADEARDKLLAMGIILED------GAQGTTWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|284053526|ref|ZP_06383736.1| cysteinyl-tRNA synthetase [Arthrospira platensis str. Paraca] Length = 486 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 179/504 (35%), Positives = 252/504 (50%), Gaps = 69/504 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F ++P ++MY CG TVYD+ H+G+AR +DV+ R L + E Sbjct: 3 LKIYNTQTRQKETFTTLEPGKVKMYCCGVTVYDYCHLGHARSYTTWDVVRRYLEWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA++ + + ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRAKEH------DSTMEEVSQRFIDAYFEDLRRLNVRDANAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------ 178 T+HI ++ LI + GHAY + ++ ++ P+YG SRR++++ +MG Sbjct: 115 VTDHIQEIHQLIDTLTATGHAYAVDGDVYYNVGHFPDYGKLSRRQLEDLQMGASGRVAVA 174 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPETLKKKNPADFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMVRQLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELL+ Sbjct: 235 DLVFPHHENEIAQSEAATG-KTLARYWMHNGMVTVGGEKMSKSLGNFTTIRELLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------STS 343 R V+RL +L HYR+P+DFT + + A +S Sbjct: 289 -RPVDPMVVRLFILQGHYRKPLDFTDEAIASANNGWETLKDGLLFAQQYGAPLGWSDDSS 347 Query: 344 KGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------- 383 G D A+ +D NT + L +LA+E + +LL Sbjct: 348 PGKYDTTEDALQRFRVAMDDDFNTPGGLAVLFELAKELRRQGNLLAHEGKTDTQSDRIYA 407 Query: 384 ---IFNASAHILGIEVCKE-----HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 A + G+E + IE LV++R K K ++ D IR QL Sbjct: 408 IWKTLVELAGVFGLEAVTQAQPPAATQGISDAEIEDLVKQRQSARKAKNYAEGDRIRDQL 467 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 ++ G L D + T W++ Sbjct: 468 QASGVTLIDRPGGE-----TLWRR 486 >gi|291567546|dbj|BAI89818.1| cysteinyl-tRNA synthetase [Arthrospira platensis NIES-39] Length = 486 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 179/504 (35%), Positives = 251/504 (49%), Gaps = 69/504 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R+ F ++P ++MY CG TVYD+ H+G+AR +DV+ R L + E Sbjct: 3 LKIYNTQTRQKETFTTLEPGKVKMYCCGVTVYDYCHLGHARSYTTWDVVRRYLEWSGYE- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA++ + + ++ + + +D RL PR Sbjct: 62 -VNYVQNFTDIDDKILNRAKEH------DSTMEEVSQRFIDAYFEDLRRLNVRDANAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------ 178 T+HI ++ LI + GHAY + ++ + P+YG SRR++++ +MG Sbjct: 115 VTDHIQEIHQLIDTLTATGHAYAVDGDVYYSVGHFPDYGKLSRRQLEDLQMGASGRVAVA 174 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 PE KKNPADF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 175 DPETLKKKNPADFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMVRQLLGETIDIHGGGG 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELL+ Sbjct: 235 DLVFPHHENEIAQSEAATG-KTLARYWMHNGMVTVGGEKMSKSLGNFTTIRELLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------STS 343 R V+RL +L HYR+P+DFT + + A +S Sbjct: 289 -RPVDPMVVRLFILQGHYRKPLDFTDEAIASANNGWETLKDGLLFAQQYGAPLGWSDDSS 347 Query: 344 KGIID------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------- 383 G D A+ +D NT + L +LA+E + +LL Sbjct: 348 PGKYDTTEDALQRFRVAMDDDFNTPGGLAVLFELAKELRRQGNLLAHEGKTDTQSDRIYA 407 Query: 384 ---IFNASAHILGIEVCKE-----HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 A + G+E + IE LV++R K K ++ D IR QL Sbjct: 408 IWKTLVELAGVFGLEAVTQAQPPAATQGISDAEIEDLVKQRQSARKAKNYAEGDRIRDQL 467 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 ++ G L D + T W++ Sbjct: 468 QASGVTLIDRPGGE-----TLWRR 486 >gi|238893488|ref|YP_002918222.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545804|dbj|BAH62155.1| cysteinyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 461 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQVDDAEVAEIESLIQRRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|87122362|ref|ZP_01078243.1| cysteinyl-tRNA synthetase [Marinomonas sp. MED121] gi|86162337|gb|EAQ63621.1| cysteinyl-tRNA synthetase [Marinomonas sp. MED121] Length = 460 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 177/474 (37%), Positives = 255/474 (53%), Gaps = 41/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P + MYVCG TVYD+ HIG+AR MI FD++ R +R+ + Sbjct: 2 LKVYNTLSGKKEEFVPLVPGKVGMYVCGNTVYDYCHIGHARAMISFDIIARHIRFSGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + ++ +T + + +D +L P +P+ Sbjct: 61 -LNYVRNITDVDDKIIKRAAEN------DETPESLTLRMIEAQTQDELKLGNKLPDREPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++I +I ++ G AY+ + ++ F T YG + RK+++ G R+ + Sbjct: 114 ATEFMQEIIDMISVLVDKGFAYQGSTGDVYFRTEKHEAYGKLNNRKLEDMLAGARIDVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NPADF+LWK + E W+SPWG GRPGWHIECSAMS++ LG FDIHGGG DL FP Sbjct: 174 AKENPADFVLWKSAKEGEVHWQSPWGIGRPGWHIECSAMSTNCLGPHFDIHGGGPDLKFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA+ + N W+H G + + KMSKS GNF T+ ++LE + Sbjct: 234 HHENEIAQSECANGTD-YVNYWMHCGAVRVNNEKMSKSLGNFFTVRDVLE-------KYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 VIR M+ + YR PID++ Q L EA++ L + + + + D A+ Sbjct: 286 PEVIRFLMVSSQYRSPIDYSEQSLLEAKVGLERMYTSLQGQALTDDYIASSYTERYQQAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEH------- 400 +D NT AI L L RE K L + A +LG+ Sbjct: 346 DDDFNTPVAISVLFDLVRELNKAKASAADNAPILAKELSVLAELLGLLGQDPEYFLKNSV 405 Query: 401 -LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 N IE L+ ER+ K K F+ +D IR +L +G L D + + R Sbjct: 406 LNNGISEAEIETLIAERIQARKDKNFARSDEIRDELSEQGITLLDSREGTSWTR 459 >gi|150392183|ref|YP_001322232.1| cysteinyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] gi|187629786|sp|A6TWK5|SYC_ALKMQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149952045|gb|ABR50573.1| cysteinyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] Length = 464 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 58/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F I+ +RMY CGPTVY++ HIGN R IVFD L + L Y + Sbjct: 1 MRLYNTLTRKKEVFVPIEQGKVRMYACGPTVYNYFHIGNGRTFIVFDALRKYLVYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII++A++E + I+ + ++ KD L P+ Sbjct: 60 -VTFVQNFTDIDDKIIKKAQEEAV------SAKEISERFIVEYFKDAATLGVDQADIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++P++I IQ ++ AYE N ++ +D S +YG S++ ++E + G R+ Sbjct: 113 VTENVPEIIAFIQELLEKNVAYEVNGDVYYDVSRFEDYGKLSKQNLEELQSGARIEVNEA 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+N DF+LWK + P EP WESPWG GRPGWHIECSAM+ YLG+ DIHGGG DL+FPH Sbjct: 173 KRNSLDFVLWKTAKPGEPSWESPWGSGRPGWHIECSAMAKKYLGETIDIHGGGGDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN WIH G+LN++ +KMSKS NF T E+ E + Sbjct: 233 HENEIAQSEACTG-KTFANYWIHVGYLNIDNKKMSKSLDNFFTPREIAE-------EYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------------STSKGII 347 +R ML HYR P++F+ + L A+ L + T K I Sbjct: 285 ESLRFFMLSAHYRTPVNFSRELLESAKSGLERLYNAKNHLEHILENTKVEEMKETEKEWI 344 Query: 348 D------PAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHI 391 D + +D NT I + L R+ + + Sbjct: 345 DSLTHYSEEFNRVMDDDFNTADGIAVIFDLVRDMNTYITGEASKEAVKAAYGMLVELTGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+ +E +++ I +L++ R K F+ +D IR L+ KG +LED Sbjct: 405 LGLLRKEE---ESLDKEIGRLIEARQQARIEKNFTKSDEIRDYLKEKGIVLEDT------ 455 Query: 452 QRMTRWKQK 460 + +W+++ Sbjct: 456 SQGVKWRKE 464 >gi|260596903|ref|YP_003209474.1| cysteinyl-tRNA synthetase [Cronobacter turicensis z3032] gi|260216080|emb|CBA28825.1| Cysteinyl-tRNA synthetase [Cronobacter turicensis z3032] Length = 461 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R I FDV+ R LR+ + Sbjct: 2 LKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + + + + D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GEDFVALVDRMVAEMHNDFDALNILRPESEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A N +++F S +YG SR+ +++ + G RV Sbjct: 114 ATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 SKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDRSVAAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + L A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQEPEQFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N + IE L+ +RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQTNDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|225851008|ref|YP_002731242.1| cysteinyl-tRNA synthetase [Persephonella marina EX-H1] gi|254781689|sp|C0QRE6|SYC_PERMH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|225645417|gb|ACO03603.1| cysteinyl-tRNA synthetase [Persephonella marina EX-H1] Length = 487 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 178/509 (34%), Positives = 254/509 (49%), Gaps = 73/509 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL K EF I P +++Y CG TVYD H+G+ R +IVFDV+ R LRY Sbjct: 1 MSLKVYNTLTGKKEEFVPIKPGEVKIYTCGVTVYDVNHVGHGRSLIVFDVIRRYLRYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN TD+DDKII RA+ E ++I + +++ +D + Sbjct: 61 N--VYFVRNFTDVDDKIINRAKNECLP------FTVIADRYIKEYFQDAENFRIEPADVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HIP +I IQ +I G+AYE ++ F YG S+R +DE G RV Sbjct: 113 PRVTTHIPDIIDFIQRLIDKGYAYEVEGDVYFSVRKFKEYGKLSKRSVDELIAGARVEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL F Sbjct: 173 EKKRDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQ+ + A WIHNG + + G+KMSKS GN+IT+ E+ + Sbjct: 233 PHHENELAQAEALS-DKPFARYWIHNGLVTVNGQKMSKSLGNYITLKEIYS-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 V+RL +L HYR P+DF+ +++ E + + I+ Sbjct: 285 DPDVLRLLVLSVHYRSPLDFSWEKMEETKKAYERLKGAIDEYEILKKLPENPDFDEHLYD 344 Query: 348 -----DPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHI 391 + +A+ +D NT A+ +L L RE D L + ++ + Sbjct: 345 EIAKAEQGFYAAMSDDFNTPEALASLFTLVREMNILRDKAVKSGGISKKALESYKEASDV 404 Query: 392 L--------GI-----------EVCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYI 431 L G+ E+ E + I +E L++ R K K+F ADYI Sbjct: 405 LHSIGKEIFGLFDSLQPCIEVEEIKVEKAEEKIDTQLVEALIEVRNKARKEKQFEIADYI 464 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWKQK 460 R++L G ++ED T+WK+K Sbjct: 465 REKLSQLGIVIEDT------PVGTKWKKK 487 >gi|218439673|ref|YP_002378002.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7424] gi|226735050|sp|B7K7T8|SYC_CYAP7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218172401|gb|ACK71134.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7424] Length = 486 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 171/506 (33%), Positives = 252/506 (49%), Gaps = 70/506 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R+ F+ ++P +RMY CG TVYD+ H+G+AR +V+DV+ R L++ Sbjct: 1 MTLTIYNTLTRQKEPFEPLEPGKVRMYCCGITVYDYCHLGHARTCLVWDVVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y++N TDIDDKI+ RAR+E ++ ++ + + + +D RL Sbjct: 61 Q--VQYIQNFTDIDDKILNRARKE------GTSMEDVSERFIKAYFEDMDRLHIQKADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + L+ + G+AY A+ ++ + S +YG S RK+++ + G Sbjct: 113 PRATHTLDGIKRLVYELEQKGYAYPADGDVYYSVRSFSDYGKLSGRKLEDLQAGASGRVD 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E KK+P DF LWK + P EP WESPWG GRPGWHIECSAM LG+ DIH G Sbjct: 173 LEDSESQKKKDPFDFALWKAAKPGEPSWESPWGLGRPGWHIECSAMVRERLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI +LL Sbjct: 233 GSDLIFPHHENEIAQSEAATG-KPLARYWMHNGMVKVGGEKMSKSLGNFTTIRDLLA--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------------- 339 + +RL +L THYR P+DFT + L A + Sbjct: 289 ----QFDPMAVRLFILQTHYRNPLDFTPKALEAATNGWQTLQEGLLFGYLFGEKLGWDQL 344 Query: 340 ----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------- 382 + + A+ +D N + L ++A++ K ++L Sbjct: 345 SSNSSVREDNPLVQQFQDAVDDDFNFAGGLAVLFEIAKDLRKEGNILVHQEKTETSPEKL 404 Query: 383 ----PIFNASAHILGIE-----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + +LG+E V +E + IE L+++R K K F+ D IR Sbjct: 405 KEQWQTLVQLSQVLGLEAHPPQVHRETTDGLTDAEIETLIEQRTQARKAKNFAEGDRIRD 464 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQ 459 L++KG L D +T+W + Sbjct: 465 DLKAKGITLIDQSGG-----ITKWHR 485 >gi|167837113|ref|ZP_02463996.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis MSMB43] Length = 465 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 186/485 (38%), Positives = 262/485 (54%), Gaps = 50/485 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ HIG+AR ++VFDV+ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDVVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +TS+ T+ D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIQSLTSRFTRAMNVDFDALGVERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPQDPAGASWESKYGAGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + A V+R ++ THYR P++++ L +A L++ T+ D A Sbjct: 288 --KFDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLY-TALKDATPDVAPLDWSEAH 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEV--CKEHLNK 403 +A+ +D NT A+ L +LA E + + L A +LG+ +E L + Sbjct: 345 ARRFAAAMNDDFNTAVAVAVLFELATEVNRTREPALARQLKRLAGVLGLLGREPREFLQQ 404 Query: 404 N---------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 IE + R+ + K ++ AD IR +L G LED Sbjct: 405 AAGAARAGALEPEEIEAKIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGS----- 459 Query: 455 TRWKQ 459 T W++ Sbjct: 460 TEWRR 464 >gi|327393038|dbj|BAK10460.1| cysteinyl-tRNA synthetase CysS [Pantoea ananatis AJ13355] Length = 461 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFTPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVSRYLRYVGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + ++I +T++ + D L L P +PR Sbjct: 61 -VNYVRNITDIDDKIIKRANEN------GESIETLTNRMIAEMHSDFDALGILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP+++ L++ +I GHAY A N +++FD S +YG+ SR+ +D+ + G RV Sbjct: 114 ATRHIPEIVELVEKLIARGHAYVAENGDVMFDVLSDVDYGALSRQDLDQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPSWPSPWGQGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMIDREKMSKSLNNFFTVRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR +++ L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDRNAVAHGGEAFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + L A++LGI + + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDMTAANALAAKLREIANVLGILQQEPEVFLQSS 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N IE+ V+ R K ++ AD R +L + G I+ED G + + W+ Sbjct: 406 AQGNDEEVAEIERWVKARADARAAKDWAQADVARDKLNALGVIVED------GPQGSSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|314937165|ref|ZP_07844512.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] gi|313655784|gb|EFS19529.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] Length = 466 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 173/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEAFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I + + F +D L T PR Sbjct: 60 TVDYVSNFTDVDDKLINRSKE------LNESVPEIADRYIKAFYEDVGALNVKRATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE+N ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKQLVDDGYAYESNGDVYFRTRQFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G+GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGQGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGIIDP- 349 V+R M+ HYR PI++ V+ + A+ L + + T ID Sbjct: 286 DVLRFFMISVHYRSPINYNVELVNAAKSGLERIRNSYQLIKEREAIATDLETQTDYIDQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D NT +A+ A + L++ + K ++ + +LG Sbjct: 346 NDILKQFEAVMDDDFNTANAVTAWYDLSKLANKYVLENTTSTKVIQRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLEGKENDVLLDEDIEKLIEERNEARKNKDFARADEIRDTLKEQNIILEDTPQGVRFRR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|315652374|ref|ZP_07905363.1| cysteine--tRNA ligase [Eubacterium saburreum DSM 3986] gi|315485348|gb|EFU75741.1| cysteine--tRNA ligase [Eubacterium saburreum DSM 3986] Length = 469 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 185/492 (37%), Positives = 251/492 (51%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF I+ +RMYVCGPTVY+ HIGNARPMI FD + R Y E Sbjct: 1 MKIFNTLSRRKEEFVPIEEGKVRMYVCGPTVYNLIHIGNARPMIFFDTVRRYFEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E ++I+ + + KD + L T P Sbjct: 60 -VNYVSNFTDVDDKIINKAIEE------GVDAAVISQRYINECKKDMAAMNVLPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M +I +I GHAY A + + F S +YG S + IDE + G R V Sbjct: 113 ATQEIEGMEDMIGKLIKSGHAYVAKDGTVYFRVKSFKDYGKLSHKNIDELQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ DF+LWK EP WESPW +GRPGWHIECS MS YLG+ DIHGGG DL Sbjct: 173 GEDGKEDSNDFVLWKPKKEGEPYWESPWSKGRPGWHIECSVMSKKYLGEQIDIHGGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + AN W+HN FLN++ +KMSKS GNF T+ ++ E Sbjct: 233 IFPHHENEIAQSESASG-KSFANYWMHNAFLNIDNKKMSKSAGNFFTVRDISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------------- 343 + V+R ML HYR P++F+ + + A+ L + + Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAELMEAAKNSLERILTGMDNIKTVIARNNTAPITDAE 344 Query: 344 ------KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 ++ A+ +D NT A+ A+ +L + S + LL + Sbjct: 345 LSNLEIAKVLKDKFADAMDDDFNTADAVSAIFELVKLSNTTLNENSTVEYAKGLLNVIEP 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + IE L+ R K K F+ AD IR L KG +LED + Sbjct: 405 LCDVLGI--ITERKTEILDSEIEDLIARRTQARKNKDFALADKIRNDLLEKGIVLEDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|257466691|ref|ZP_05631002.1| cysteinyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|315917843|ref|ZP_07914083.1| cysteinyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|313691718|gb|EFS28553.1| cysteinyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] Length = 473 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 188/493 (38%), Positives = 271/493 (54%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + F + MYVCGPTVY++ HIGNARP IVFD + R Y + Sbjct: 2 IKIYNTLSASLDTFTPRKEKEVSMYVCGPTVYNYIHIGNARPAIVFDTVRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 VTYV+N TD+DDK+I+RA +E + + + Q +++D L +P Sbjct: 61 -VTYVQNFTDVDDKMIKRANEE------GTTVEDVAHRYIQAYLEDMKSLHIKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI +IQN+I GHAYE+N ++ F ++ YG+ S++KI++ + G R+ Sbjct: 114 KATEHIQEMIDMIQNLIDKGHAYESNGDVYFRVATYHQEYGALSKQKIEDLQSGARIEVT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG GRPGWHIECSAMS+ Y G FDIHGGG DLIF Sbjct: 174 EIKESPLDFALWKASKPGEPSWKSPWGEGRPGWHIECSAMSNKYFGDSFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ AN W+HNG++N++G KMSKS GNF+ + ++L + + Sbjct: 234 PHHENEIAQSKCSCGGS-FANYWMHNGYINIDGVKMSKSLGNFVLLRDIL-------KHF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------------QT 340 VIR ML HYR+P++F+ L++A+I L + + Sbjct: 286 SGKVIRFFMLSAHYRKPMNFSDAELSQAKIALERIENSLIRANEISETSIALEGSAGVEL 345 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK------NHDLLPIFNASA----- 389 + + A+ D NT AI + +L RE K N + I +A Sbjct: 346 KKALEDTKEKFIEAMDEDFNTAQAIGVIFELVRELNKTLDSSYNQEAYVIVKETADYLYH 405 Query: 390 ---HILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGIEV E +N+++ +E +++ R K ++ +D IR +L G ++D Sbjct: 406 ILYDVLGIEVEVETKVENLTVDLVEFILELRREARAEKNWALSDRIRDRLAELGIQIKDG 465 Query: 446 KNPDNGQRMTRWK 458 K+ T W+ Sbjct: 466 KDS------TTWR 472 >gi|313672372|ref|YP_004050483.1| cysteinyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312939128|gb|ADR18320.1| cysteinyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 479 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 196/487 (40%), Positives = 268/487 (55%), Gaps = 61/487 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL + F ++ + +++YVCG TVYD+ HIG+AR IVFD + R L+Y + Sbjct: 2 LKIFNTLSGEKEVFTPLEDNKVKIYVCGVTVYDYCHIGHARSSIVFDTIRRYLKYKGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII+RA +E N +I+ IT + +D +L L P + PR Sbjct: 61 -VTFVKNFTDVDDKIIKRANEE------NKSINEITDFFIKAHDEDMDKLNILRPDYTPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI L + +I G AYE+N ++ F + +YG S+R +D+ G RV Sbjct: 114 ATEYIDGMIKLCEKLIEKGFAYESNGDVYFKVRAFKDYGKLSKRDLDDLLAGARVDVNEI 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWKRS EPGW+SPWGRGRPGWHIECS MS+ LG FDIHGGG DLIFPH Sbjct: 174 KEDPLDFALWKRSKEGEPGWDSPWGRGRPGWHIECSVMSAEILGIPFDIHGGGKDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ E A WIHNGF+N+ KMSKS GNF TI ++L + Sbjct: 234 HENEIAQSEAAEGKE-FARYWIHNGFVNINKEKMSKSLGNFFTIRDVL-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGIIDP-- 349 V+R +L THYR P+DF+ + L EAE L + KG ID Sbjct: 286 EVLRFFLLTTHYRSPLDFSFENLLEAENALDRIYTAIDELESAVFNNKKPAQKGKIDEIV 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLAREST-----------------KNHDLLPIFNA 387 ++ +D NT SAI + +L + + ++ I Sbjct: 346 DRFKRDFEESMDDDFNTASAISNIFELIKGVNLLLSERLNSEDLNYLKVRFEEVKAIIR- 404 Query: 388 SAHILGI--EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +LGI + E N+SI ++KL++ER I + K FS AD IR +L++KG L Sbjct: 405 --DVLGILTKTASEWFKMNLSIDESELQKLIEEREIARRNKDFSKADAIRNELKTKGVEL 462 Query: 443 EDYKNPD 449 D Sbjct: 463 LDTPTGT 469 >gi|283795457|ref|ZP_06344610.1| cysteine--tRNA ligase [Clostridium sp. M62/1] gi|291077118|gb|EFE14482.1| cysteine--tRNA ligase [Clostridium sp. M62/1] gi|295091141|emb|CBK77248.1| cysteinyl-tRNA synthetase [Clostridium cf. saccharolyticum K10] Length = 469 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 177/487 (36%), Positives = 249/487 (51%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRQKEEFVPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII +A +E I+ + + KD + T P+ Sbjct: 60 -VNYVSNFTDVDDKIIRKAIEE------GVDAQTISERYIAECKKDMEMMNVKPATVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M +IQ +I GHAY A + + F T S YG S + +++ + G R V Sbjct: 113 ATEEICGMEEMIQELIDKGHAYVAKDGTVYFRTKSFKEYGKLSHKNLEDLQSGFRELKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG DIH GG DL Sbjct: 173 GEEDKEDPTDFVLWKPKKDGEPFWESPWCEGRPGWHIECSVMSKKYLGDSIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS A+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 VFPHHENEIAQSEAANG-KPFAKYWMHNAFLNIDNKKMSKSLGNFRTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------------- 337 + V+R ML HYR P++F+ + + + L + Sbjct: 285 QYDLQVLRFFMLSAHYRSPLNFSAELMEASRNGLERILTGVERLRDLLAKAAEKEMSGEE 344 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 + + + +A+ +D NT AI A+ ++ + S +L Sbjct: 345 RRNLETAAELVKKFEAAMDDDFNTADAISAIFEMVKLSNSTISEESSRAYLEELKGSIER 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + IE +++ER K K F+ AD IR +L G +LED + Sbjct: 405 LCEVLGI--ITEKKAEVLDDEIEAMIEERQQARKAKNFALADEIRGKLLDMGIVLEDTRE 462 Query: 448 PDNGQRM 454 +R+ Sbjct: 463 GVKWKRV 469 >gi|16763917|ref|NP_459532.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62179146|ref|YP_215563.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167990531|ref|ZP_02571631.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231534|ref|ZP_02656592.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261021|ref|ZP_02682994.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818841|ref|ZP_02830841.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194472796|ref|ZP_03078780.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251404|ref|YP_002145520.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205351838|ref|YP_002225639.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856015|ref|YP_002242666.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582374|ref|YP_002636172.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911333|ref|ZP_04655170.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|21264009|sp|Q8ZR68|SYC_SALTY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81309761|sp|Q57S29|SYC_SALCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710849|sp|B5EYD7|SYC_SALA4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226710851|sp|B5R6X0|SYC_SALG2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558784|sp|B5QUV0|SYC_SALEP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781692|sp|C0PVI8|SYC_SALPC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|16419048|gb|AAL19491.1| cysteine tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62126779|gb|AAX64482.1| cysteine tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194459160|gb|EDX47999.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215107|gb|ACH52504.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205271619|emb|CAR36445.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330830|gb|EDZ17594.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333999|gb|EDZ20763.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343946|gb|EDZ30710.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349964|gb|EDZ36595.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707818|emb|CAR32103.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466901|gb|ACN44731.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245816|emb|CBG23614.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992259|gb|ACY87144.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157145|emb|CBW16629.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911570|dbj|BAJ35544.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084812|emb|CBY94602.1| Cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226119|gb|EFX51170.1| Cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713608|gb|EFZ05179.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128857|gb|ADX16287.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987486|gb|AEF06469.1| cysteinyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 461 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|323439800|gb|EGA97517.1| cysteinyl-tRNA synthetase [Staphylococcus aureus O11] Length = 466 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 172/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRKFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKSGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K FS AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKKKDFSRADEIRDMLKSQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|295702329|ref|YP_003595404.1| cysteinyl-tRNA synthetase [Bacillus megaterium DSM 319] gi|294799988|gb|ADF37054.1| cysteinyl-tRNA synthetase [Bacillus megaterium DSM 319] Length = 465 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 164/487 (33%), Positives = 255/487 (52%), Gaps = 57/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL R+ F ++ + ++MYVCGPTVY++ HIGNARP IVFD + R L + + Sbjct: 3 IKLYNTLTRQKETFVPLEENKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEFRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A++ + + + I ++ + +DT+ L C PR Sbjct: 62 -VEYVSNFTDVDDKLIKAAKE------LGEDVPTIANRFIDAYFEDTSALGCKHADVHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I ++ +AYE+ ++ + T YG S + IDE + G R+ Sbjct: 115 VTENMDIIIEFIDELVKKEYAYESEGDVYYRTRKFEGYGKLSHQSIDELQSGARIEVGEK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + E W+SPWG+GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 175 KEDPLDFTLWKATKDGEIAWDSPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 235 HENEIAQSEALTG-KSFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKHDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 ++R +L HYR PI++ + L + + Sbjct: 287 SLLRFFILSVHYRHPINYNEEILENTRKGFERLQTAYGNLTHRLEAATNLQEDASEWFEK 346 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLAREST-------KNHDLLPI----FNASAHIL 392 + + + +D NT +AI L +LA+++ + D++ F + Sbjct: 347 LKELRETFVEEMDDDFNTANAISVLFELAKQANLYLLEQTTSTDVIEAFIKEFKELGTAI 406 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI + L + I++L+Q+R+ K + F AD IR +L++K ILED Sbjct: 407 GITFGEAEL---LDEEIDQLIQDRIQARKDRNFQLADQIRDELKAKNIILEDT------A 457 Query: 453 RMTRWKQ 459 + TRWK+ Sbjct: 458 QGTRWKR 464 >gi|321313765|ref|YP_004206052.1| cysteinyl-tRNA synthetase [Bacillus subtilis BSn5] gi|320020039|gb|ADV95025.1| cysteinyl-tRNA synthetase [Bacillus subtilis BSn5] Length = 466 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 255/489 (52%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I+ + + + +D + L C Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTISERFIKAYFEDVSALGCRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 ++R ML HYR PI+++ + L + ++ ++ Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLENTKSAFNRLKTAYSNLQHRLNSSTNLTEDDDQWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAREST----KNHDL-------LPIFNASAH 390 A A+ +D NT +AI L LA+ + K+H + +F+ Sbjct: 345 EKVEEHRKAFEEAMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|299133613|ref|ZP_07026807.1| cysteinyl-tRNA synthetase [Afipia sp. 1NLS2] gi|298591449|gb|EFI51650.1| cysteinyl-tRNA synthetase [Afipia sp. 1NLS2] Length = 464 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 237/474 (50%), Positives = 311/474 (65%), Gaps = 31/474 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL + F+ IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTLTKDKRAFKPIDPRNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E+ VTYVRNITD+DDKI +RA +++P +P+N+AI +T K QF D L CL PT + Sbjct: 61 EQHVTYVRNITDVDDKINDRALRDYPGLPLNEAIRKVTEKTATQFHADVDALGCLKPTVE 120 Query: 123 PRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT+ + M+ LI+ +I GHAYEAN E++FDT+S+P+YG S R++DEQ+ Sbjct: 121 PRATDFVLPRADGKADMVSLIKTLIDRGHAYEANGEVLFDTASMPDYGKLSGRRLDEQQA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G R+ HKK+PADF+LWK+S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG VFDIHG Sbjct: 181 GARIAVDAHKKHPADFVLWKQSSADEPGWDSPWGRGRPGWHIECSAMSAAYLGDVFDIHG 240 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL Sbjct: 241 GGLDLIFPHHENEIAQSRCAHGTHAMANYWLHNGFLQVEGEKMSKSLGNFVTINELL--- 297 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--VLS 353 + WP V+RL ML THYR PID+TV+ L E+ +L W T+ PA VL Sbjct: 298 ----KDWPGEVVRLNMLKTHYRSPIDWTVKGLEESAKVLDDWYATAGDIKGSAPAGTVLD 353 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL-LPIFNASAHILGI--------EVCKEHLNKN 404 L +DLNT + ALH L ++ + + F +S +LG + K+ + Sbjct: 354 TLADDLNTAQTVAALHGLRHQAERGGEAERNEFASSLRLLGFLAETRADWDARKQEASGV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + L+ +R K + +D IR +L + G ++D K T W+ Sbjct: 414 DAAQVSALIADRTAARARKDWKESDRIRDELAAMGVAIKDSK------EGTTWE 461 >gi|163760568|ref|ZP_02167649.1| cysteinyl-tRNA synthetase [Hoeflea phototrophica DFL-43] gi|162282183|gb|EDQ32473.1| cysteinyl-tRNA synthetase [Hoeflea phototrophica DFL-43] Length = 505 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 250/503 (49%), Positives = 324/503 (64%), Gaps = 45/503 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++K +NTL R EFQ ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 2 SELKFWNTLTRVKEEFQPIDKDNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKI RA +++P +P+N+AI+ +T K +F KD L CL PTH+ Sbjct: 62 ADHVTYVRNITDVDDKINARALRDYPDLPLNEAIAKVTEKTANRFHKDAAALGCLEPTHE 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 PRAT HI M+ +IQ +I G+AY + E++F SS+P+YG S RK ++Q+ G R Sbjct: 122 PRATAHIDGMVKMIQTLIDKGNAYVTSGREGREVLFAVSSMPDYGKLSNRKPEDQQAGAR 181 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSAMSSHYLGKV 230 + + HK+NPADF+LWK S EPGW+ + GRPGWHIECS MS H+LG Sbjct: 182 IAVEDHKRNPADFVLWKESASDEPGWDGVFADGGQTISIHGRPGWHIECSVMSEHHLGAT 241 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDLIFPHHENEIAQSCCA ++ AN+W+HNGFL +EG+KMSKS+GNF+TI E Sbjct: 242 FDIHGGGLDLIFPHHENEIAQSCCAHGNDRMANLWMHNGFLQVEGKKMSKSDGNFVTIAE 301 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----PQTSTSKG 345 LLET KFGGR WP V+RLAMLMTHYREPIDF+V+RL EA I LS W + G Sbjct: 302 LLETDKFGGRKWPGEVLRLAMLMTHYREPIDFSVKRLEEANISLSNWLGPHARRGVPEDG 361 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI----------FNASAHILGI- 394 + V+ AL +DL+ +A + + ES K DL A+ LG+ Sbjct: 362 SVSKEVVRALSDDLDFSAAKLVIDFMLAESRKVTDLDQESIGKTKLRNDLAATLVWLGLA 421 Query: 395 ---------EVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLES 437 K+ L + A ++ V ERL + K ++ AD IR +L + Sbjct: 422 KQDEDFAVARANKQGLRAVVEAALVGLKASDVDSRVNERLAFIAAKNWAEADRIRDELLA 481 Query: 438 KGFILEDYKNPDNGQRMTRWKQK 460 +G L+D K+P+ G+R+T W+ K Sbjct: 482 QGIQLKDGKDPETGERVTTWEVK 504 >gi|281599852|gb|ADA72836.1| Cysteinyl-tRNA synthetase [Shigella flexneri 2002017] gi|332763819|gb|EGJ94057.1| cysteinyl-tRNA synthetase [Shigella flexneri K-671] gi|333021864|gb|EGK41112.1| cysteinyl-tRNA synthetase [Shigella flexneri K-304] Length = 461 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNSDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+N DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNRMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|242372747|ref|ZP_04818321.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] gi|242349520|gb|EES41121.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] Length = 466 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 258/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMQEIIDFIKELVDEGYAYESDGDVYFRTRQFNGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGEGRPGWHIECSVMAYHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------------SK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREAIATDLEEHTEYMNQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 I + + +D NT +A+ A + LA+ + K + ++ + +LG Sbjct: 346 DEILKQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVFNKFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + ++ + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLKGKEADELLDEEIEKLIEERNEARKNKDFARADEIRDMLKERNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|326626876|gb|EGE33219.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 461 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 260/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A ++R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AEIVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|192361138|ref|YP_001982161.1| cysteinyl-tRNA synthetase [Cellvibrio japonicus Ueda107] gi|190687303|gb|ACE84981.1| cysteinyl-tRNA synthetase [Cellvibrio japonicus Ueda107] Length = 466 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 180/485 (37%), Positives = 265/485 (54%), Gaps = 50/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ + P I MYVCG TVYD+ HIG+AR ++ FDV+ + LR Sbjct: 3 LQIYNTLSRQKEEFKPLKPGKISMYVCGITVYDYCHIGHARVLVAFDVITKFLRSQG--W 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + + +T + +D RL P +PR Sbjct: 61 DVTYVRNITDIDDKIIKRANEN------GEQYTDLTKRFIDYMHEDEARLGIARPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I Q+I + Q +I G+AY A N ++ + + +YG + + +DE +G R+ Sbjct: 115 ATAFIDQIINMNQALIDKGYAYPASNGDVYYRVTRFADYGKLTNKNVDELLVGARIEVDE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP W+SPWG+GRPGWHIECSAMS G FDIHGGG DL FP Sbjct: 175 IKEDPRDFVLWKAAKAGEPAWKSPWGQGRPGWHIECSAMSKDCCGTTFDIHGGGPDLPFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ + N W+H G + ++G KMSKS GNF TI ++LE + Sbjct: 235 HHENEIAQSEAANGCK-YVNYWMHAGAVRVDGEKMSKSLGNFFTIRDVLE-------KYH 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP-------------A 350 V+R ++ +HYR PI++ L EA L ++ ++ + Sbjct: 287 PEVVRFLLVSSHYRSPINYAEDNLVEARTGLERFYGALRDYADVESLPLTELQASDYYRS 346 Query: 351 VLSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEHL- 401 ++A+ +D NT A+ +++ L RE + L A ILGI + Sbjct: 347 FVAAMNDDFNTRVALASMYDLVRELNNAGKTDVERAQRLAGELKALGLILGILQENPRVF 406 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + +++LV ER+ K K ++ AD +RKQL G ++ED K+ T Sbjct: 407 LQTGTSGQIAAEEVDRLVAERIQAKKEKNYARADEVRKQLADNGILIEDAKDGT-----T 461 Query: 456 RWKQK 460 +W+++ Sbjct: 462 QWRRE 466 >gi|291482466|dbj|BAI83541.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195] Length = 466 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 254/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I+ + + + +D L C Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTISERFIKAYFEDVGALGCRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 ++R ML HYR PI+++ + L + ++ ++ Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLENTKSAFNRLKTAYSNLQHRLNSSTNLTEDDDQWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAREST----KNHDL-------LPIFNASAH 390 A A+ +D NT +AI L LA+ + K+H + +F+ Sbjct: 345 EKVEEHRKAFEEAMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|82775639|ref|YP_401986.1| cysteinyl-tRNA synthetase [Shigella dysenteriae Sd197] gi|109894938|sp|Q32JL0|SYC_SHIDS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81239787|gb|ABB60497.1| cysteine tRNA synthetase [Shigella dysenteriae Sd197] Length = 461 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFNALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY + +++FD + P YG SR+ +D+ G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVVDNGDVMFDVPTDPTYGVLSRQDLDQLLAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+N DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNTMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|254492695|ref|ZP_05105866.1| cysteinyl-tRNA synthetase [Methylophaga thiooxidans DMS010] gi|224462216|gb|EEF78494.1| cysteinyl-tRNA synthetase [Methylophaga thiooxydans DMS010] Length = 463 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 176/483 (36%), Positives = 259/483 (53%), Gaps = 50/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L R+ F+ I + MYVCG TVYD H+G+AR M+VFDV+ R LR Sbjct: 2 LKIHNSLSRQKETFKPITAGKVNMYVCGMTVYDLCHVGHARVMVVFDVVTRYLRALGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + I +T + + +D L L P +P+ Sbjct: 61 -VTYVRNITDIDDKIIKRAAEN------GETIQALTERFIAEMHQDADALGVLRPDLEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +P+++ +++ +I G AY+A+ ++ +D S YG S R++D+ + G R+ Sbjct: 114 ATESMPEILAMVETLIGKGLAYKADNGDVYYDVSKFEAYGKLSGRQVDDLRAGERIAVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP WESPWG GRPGWHIECSAMS+H LG+ FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKEGEPAWESPWGMGRPGWHIECSAMSAHCLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+ ++ KMSKS GNF T+ E+L +P Sbjct: 234 HHENEIAQSEGAHDCQS-VNYWMHNGFVRIDDEKMSKSLGNFFTVREVLA-------QYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------SKGIIDPAVL 352 A +R +L +HYR P+++ +L +A+ L+++ + Sbjct: 286 AEAVRYFILSSHYRSPLNYAEDQLEQAKAALTRFYTSLRDVEPQPELNWQDDKEFGSRFA 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIEVCKEH--- 400 A+ +D NT A+ + + + K + L + + +LG+ Sbjct: 346 EAMDDDFNTALALSVMADVRQALNKALENNEADLAAYLAGLLLSFGDVLGLFQQDAETFL 405 Query: 401 ----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + + AI+ L+ ER K +S AD IR QL G ++ED T Sbjct: 406 VGDMAEDSDADAIDALIVERNQARADKNWSRADDIRDQLSEMGIVIED------AAGKTS 459 Query: 457 WKQ 459 W++ Sbjct: 460 WRR 462 >gi|327480668|gb|AEA83978.1| cysteinyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166] Length = 462 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 186/478 (38%), Positives = 258/478 (53%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL + F+ ++ + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR+ + Sbjct: 4 LAIYNTLSKAKEPFRPLEGNKVRMYVCGMTVYDFCHIGHARVMVAFDVVTRWLRHRGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + + + + +D TRL L P +PR Sbjct: 63 -VTYVRNITDIDDKIIRRASEN------GEPFQALVERMIAAMHEDETRLNVLRPDVEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI M +IQ +I G AY N ++ + YG SRRKI++ K+G R+ Sbjct: 116 ATDHIAGMHTMIQTLIDKGFAYAPGNGDVYYRVGKFVGYGKLSRRKIEDLKIGARIEVDE 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECS MS+ LG+ FDIHGGG DL+FP Sbjct: 176 AKEDPLDFVLWKGAKPGEPSWDSPWGPGRPGWHIECSVMSTCCLGETFDIHGGGPDLVFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + AN W+H G + ++G KMSKS GNF TI E+LE + Sbjct: 236 HHENEIAQSEAATG-KLYANAWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------KYH 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R ++ +HYR PI+++ L EA+ L ++ PA + + Sbjct: 288 PEVVRYLLVSSHYRSPINYSEDSLREAKSALERFYNGLKGLPEAQPAGGDEFVARFAAVM 347 Query: 356 YNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK-------EH 400 +D N+ A L ++ RE + + L A +LG+ + Sbjct: 348 DDDFNSPEACAVLFEMIREVNRLRESDLTAAAALAARLKELAGVLGVLQLEPGAFLQAGA 407 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 K + +E L+ RL K + +D IR QL + G +LED K T W+ Sbjct: 408 AGKVDAAEVEALIAARLAARAEKNWGESDRIRDQLTAMGVVLEDGK------GGTTWR 459 >gi|238920879|ref|YP_002934394.1| cysteinyl-tRNA synthetase, [Edwardsiella ictaluri 93-146] gi|259511831|sp|C5B8V6|SYC_EDWI9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|238870448|gb|ACR70159.1| cysteinyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146] Length = 461 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + ++ +T + + +D L P +PR Sbjct: 60 RLKYVRNVTDVDDKIIKRALENQ------ESCEQLTERMLAEMHRDFDALNIARPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I HAY A N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALVEQLIARDHAYVASNGDVMFAVDTDPDYGVLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSTCAHDGA-YVNCWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + T+ +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDVAAQPTADETFTTRFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHL---- 401 + +D NT A L +ARE + + L AH+LG +E EH Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKGEDMAQANALAAQMRGLAHVLGLLEQTPEHFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K ++ AD R L + G +LED G + T W+ Sbjct: 406 AAAGDDEVAQIEALIRQRNDARAAKAWALADEARDSLNAMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|301168673|emb|CBW28264.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 10810] Length = 459 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 260/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +P Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPH 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWSSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNKARAAKDWAAADAARNELTAMGIVLED------GPNGTTWRKQ 459 >gi|255527266|ref|ZP_05394147.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|296187245|ref|ZP_06855641.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|255509051|gb|EET85410.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] gi|296048116|gb|EFG87554.1| cysteinyl-tRNA synthetase [Clostridium carboxidivorans P7] Length = 465 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 168/488 (34%), Positives = 258/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ RK EF + ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVFNTIARKKEEFIPLSEKEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA+++ N + + K +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRAKED------NITVKELGDKFIEEYYKDADSLNIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +++ ++ +I G+AYE + ++ F T +YG S + +++ + G R+ Sbjct: 113 ATEYINEIVDFVKELIDRGYAYEVDGDVYFHTKKFKDYGKLSGQNLEDLQAGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP W+SPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAVWKSQKPGEPAWKSPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLAFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQS + A W+H+ F+N+ KMSKS NF T E+LE + + Sbjct: 233 HENEVAQSEARTG-KTFAKYWMHSAFVNVNNEKMSKSLNNFFTAREILE-------KYDS 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV--- 351 VIRL ML HYR I+F+++ L + + + + + + ++D V Sbjct: 285 DVIRLFMLSGHYRTQINFSMESLESMKAAMDRLYNSISNLESLLEETKQEELMDQEVEYI 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT A+ + L R+ N + L + Sbjct: 345 KILDGYKEKYIEKMDDDFNTADAVSVIFDLIRDINTNVKIDSSKKLIKHCLNLIKELGKP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI ++ N+ IE L++ER K K ++ +D IR L+ +G +LED Sbjct: 405 LGI--LQKSKKGNLEEKIEALIEERQQARKDKNWALSDKIRDDLKEQGILLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWK+ Sbjct: 457 PQGVRWKR 464 >gi|23015242|ref|ZP_00055024.1| COG0215: Cysteinyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 460 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 214/481 (44%), Positives = 274/481 (56%), Gaps = 46/481 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R F+ + P ++ MYVCGPTVYD AHIGNARP+IVFDVLYRLL+ Y Sbjct: 1 MPLVLYNTLTRTKDVFEPLVPGHVGMYVCGPTVYDRAHIGNARPVIVFDVLYRLLKTLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRN+TD+DDKI +A+ + IS+IT + T F +D L CL P + Sbjct: 60 -PSVRYVRNVTDVDDKINAKAKA------TGEPISVITERTTALFHEDIGALNCLMPDVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI QMI +I+ +I G AY A ++F ++ +YG+ SRR DE G RV Sbjct: 113 PRATAHIGQMIAMIERLIEKGFAYAAEGHVLFAVGAMADYGALSRRSSDEMIAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KK+P DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGG DL+F Sbjct: 173 PYKKDPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMSLQHLGETFDIHGGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA+ + A W+HNG+L +EG KMSKS GNF T+ +LL Sbjct: 233 PHHENEIAQSTCANG-KPFARFWLHNGWLMVEGEKMSKSLGNFFTVRDLLG-------QA 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVLS 353 P IRLAML THY +P D+T L +A+ L + +D +L+ Sbjct: 285 PGEAIRLAMLATHYHQPFDWTSDGLKQAKATLDRLYTALRGAADVDASGYEAEVPLEMLA 344 Query: 354 ALYNDLNTVSA-IQALHKLARESTKNHDL------LPIFNASAHILGIEVCKEH------ 400 AL +DLNT I LH+LA K L AS H+LG+ Sbjct: 345 ALKDDLNTPLXPISHLHELAGALNKATGLEDKARRKGALLASGHLLGLLYQDPEAWFKGT 404 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE + R K K F+ AD IR+ L +KG +LED G T WK Sbjct: 405 GAADGPADAEIEAAIIARTEARKAKNFAEADRIRQDLAAKGVVLED------GAGGTTWK 458 Query: 459 Q 459 + Sbjct: 459 R 459 >gi|257452930|ref|ZP_05618229.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|317059471|ref|ZP_07923956.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|313685147|gb|EFS21982.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] Length = 473 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 189/493 (38%), Positives = 271/493 (54%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + F + MYVCGPTVY++ HIGNARP IVFD + R Y + Sbjct: 2 IKIYNTLSASLDTFTPRKEKEVSMYVCGPTVYNYIHIGNARPAIVFDTVRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 VTYV+N TD+DDK+I+RA +E + + + Q +++D L +P Sbjct: 61 -VTYVQNFTDVDDKMIKRANEE------GTTVEDVAHRYIQAYLEDMKSLHIKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI +IQN+I GHAYE+N ++ F ++ YG+ S++KI++ + G R+ Sbjct: 114 KATEHIQEMIDMIQNLIDKGHAYESNGDVYFRVATYHQEYGALSKQKIEDLQSGARIEVT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG GRPGWHIECSAMS+ Y G FDIHGGG DLIF Sbjct: 174 EIKESPLDFALWKASKPGEPSWKSPWGEGRPGWHIECSAMSNKYFGNSFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ AN W+HNG++N++G KMSKS GNF+ + ++L + + Sbjct: 234 PHHENEIAQSKCSCGGS-FANYWMHNGYINIDGVKMSKSLGNFVLLRDIL-------KHF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------- 349 VIR ML HYR+P++F+ L++A+I L + + I Sbjct: 286 SGKVIRFFMLSAHYRKPMNFSDAELSQAKIALERIENSLIRAHEISETSIALEGSAGVEL 345 Query: 350 ---------AVLSALYNDLNTVSAIQALHKLARESTK------NHDLLPIFNASA----- 389 + A+ D NT AI + +L RE K N + I +A Sbjct: 346 KKALEDTKGKFIEAMDEDFNTAQAIGVIFELVRELNKTLDSSYNQEAYVIVKETADYLYH 405 Query: 390 ---HILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGIEV E +N+++ +E +++ R K ++ +D IR +L G ++D Sbjct: 406 ILYDVLGIEVEVETKVENLTVDLVEFILELRREARAEKNWALSDRIRDRLAELGIQIKDG 465 Query: 446 KNPDNGQRMTRWK 458 K+ T W+ Sbjct: 466 KDS------TTWR 472 >gi|118602151|ref|YP_903366.1| cysteinyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567090|gb|ABL01895.1| cysteinyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 462 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 187/483 (38%), Positives = 265/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ F+ I+ + +YVCG TVYD+ H+G+AR +++FDV+ R LR Y+ Sbjct: 2 LKIYNTLSKQKEVFRPINADKVGIYVCGMTVYDYCHMGHARILVIFDVIIRHLRRYF--P 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA I + I +T++ +D L L P +PR Sbjct: 60 NVEYVRNITDIDDKIIKRA------IENKEDIYALTNRFIDAMHEDERALGVLPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN + Q+ Y+I+++I G AY+A N ++ + NYG SR+ ID+ + G R+ + Sbjct: 114 ATNAMKQIFYMIKSLIEKGFAYQAHNGDVYYSVRHFKNYGKLSRKNIDKLEAGARIEIES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAMS+H+LG FDIHGGG+DL FP Sbjct: 174 AKKNPLDFVLWKMSKPNEPSWDSPWGQGRPGWHIECSAMSTHHLGNHFDIHGGGMDLSFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H GF+N++ KMSKS NF TI +LE S+ Sbjct: 234 HHENEIAQSEGANNC-TFVNTWMHIGFVNIDDEKMSKSLNNFFTIRSILE-------SYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------------IIDPA 350 +R ++ +HYR P++F+ L +A+ LS+ Sbjct: 286 CETLRYFIMSSHYRSPLNFSDDNLNKAKSSLSRLYTAIRGLNTSSTVTEKVPMYFDYSVR 345 Query: 351 VLSALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEV--CKEH 400 AL ND NT A+ L +LA+ + + L + +GI + Sbjct: 346 FNEALDNDFNTPIALSILFELAKTVNLQRKKDVDQANALAQLLKKLGDYIGILQMDADKF 405 Query: 401 LNKNIS---IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 L + IS ++ + R K F+ +D IR +L G +LED N T W Sbjct: 406 LKQGISLSNSEVDVKITSRNEARADKNFALSDQIRDKLAELGIVLEDNAND------TTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RRK 462 >gi|323443098|gb|EGB00718.1| cysteinyl-tRNA synthetase [Staphylococcus aureus O46] Length = 466 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 261/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N ++ I K F +D L T PR Sbjct: 61 -VEYVSNFTDVDDKLIKRSQE------LNQSVPEIAEKYIAAFHEDVGALNVRKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I++++ G+AYE+ ++ F T YG S + ID+ K+G R+ H Sbjct: 114 VMDHMDDIIQFIKDLVDQGYAYESGGDVYFRTRIFEGYGKLSHQSIDDLKVGARIDAGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ E W+SP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKSGEISWDSPFGEGRPGWHIECSVMAFHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHV-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVESARSGLERIRNSYQLIEERAQIATNIENQQTYIDQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + + +D NT +AI A + LA+ + K + +++ F A + +LG Sbjct: 346 DAILNRFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTEVIDKFKAVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ ++ + +EKL++ER K K F+ AD IR L+S+ ILED +R Sbjct: 406 VPLKSKNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQSIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|172056119|ref|YP_001812579.1| cysteinyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] gi|229558633|sp|B1YGS9|SYC_EXIS2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171988640|gb|ACB59562.1| cysteinyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] Length = 465 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 170/487 (34%), Positives = 259/487 (53%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN++ K F+ ++ ++MYVCGPTVY++ HIGNARP IVFD + R Y + Sbjct: 2 IQLYNSMTGKKEPFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYFTYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A + + + +T + + + DT L P Sbjct: 61 -VKYVSNFTDVDDKIIRTANE------LGEDYHALTKRFIEAYHADTGALNVQKADIHPL 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I I+ ++ G+AY ++ ++ F T S +YG S++ IDE + G R+ Sbjct: 114 VTETMDDIIAFIEVLVKKGNAYASSGDVYFRTRSFKDYGQLSQQSIDELRSGARIEVGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG GRPGWHIECSAM+ YLG DIH GG DL FPH Sbjct: 174 KEDPLDFVLWKAAKPGEPAWTSPWGEGRPGWHIECSAMAKKYLGDTIDIHAGGQDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+HNGFLN+E KMSKS GNF+T++E + ++ Sbjct: 234 HENEIAQSEACNSQK-FANYWMHNGFLNIENEKMSKSLGNFLTVHEAI-------QAVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 V+R ML YR PI+++ + +A L++ ++ + Sbjct: 286 MVLRFFMLSVQYRHPINYSRDLIDQAANGLARIRESVANVEHRLTMTADLGTATEKWLNR 345 Query: 345 -GIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAHIL 392 I ++++ +D NT +A+ L L++E+ L +F + +L Sbjct: 346 IEEIKQHFVTSMDDDFNTANAVTDLFDLSKEANLYLGEDQVAKEVLERFLAVFQELSTVL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + E + +E+L+++R K + F+ AD IR QL +G +LED Sbjct: 406 GVTLTIEK--GLLDEEVEQLIRDRDTARKERDFARADAIRDQLRDQGILLEDT------A 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGMRWKR 464 >gi|161830739|ref|YP_001597327.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 331] gi|187629808|sp|A9N924|SYC_COXBR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|161762606|gb|ABX78248.1| cysteinyl-tRNA synthetase [Coxiella burnetii RSA 331] Length = 458 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 173/480 (36%), Positives = 258/480 (53%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+N+L ++ F+ I+ +++YVCG TVYD+ HIG+ R I+FD++ R LR E Sbjct: 1 MKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RA + ++ + + + Q +D L L+P +PR Sbjct: 60 -VTFVRNITDIDDKIIKRAGENK------ESPAALAERFIQILHEDEKALRVLSPDQEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P++I LIQ ++ + +AY N ++ FD +YG S R +D+ + G RV Sbjct: 113 ATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDKLQAGARVEVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK++ P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGGLDL FP Sbjct: 173 SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + +W+H G L + KMSKS GN I+I E L + Sbjct: 233 HHENEIAQSEAGE-EKPFVKLWMHAGLLEINKEKMSKSLGNIISIREAL-------KESD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R +L HYR P+ ++ + L + L ++ +++ A+ Sbjct: 285 VEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAM 344 Query: 356 YNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI------EVCKEH 400 +D NT A L ++ RE + D L +I G+ + + Sbjct: 345 DDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA 404 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I+KL+ +R K + +AD IR QL G +ED + T W+Q+ Sbjct: 405 KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSD------GTSWRQE 458 >gi|269140042|ref|YP_003296743.1| cysteinyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|267985703|gb|ACY85532.1| cysteinyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|304559869|gb|ADM42533.1| Cysteinyl-tRNA synthetase [Edwardsiella tarda FL6-60] Length = 461 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LRY Sbjct: 2 LKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRN+TD+DDKII+RA + ++ +T + + +D L P +PR Sbjct: 60 RLKYVRNVTDVDDKIIKRALENK------ESCEQLTERMLAEMHRDFDALNIARPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L++ +I HAY A N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALVEQLIARDHAYVASNGDVMFAVDTDPDYGVLSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSTCAHDGA-YVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDAAAQPAADETFTARFRAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHL---- 401 + +D NT A L +ARE + L AH+LG +E EH Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKGEDMAQASALAAQMRGLAHVLGLLEQTPEHFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+++R K ++ AD R L + G +LED G + T W+ Sbjct: 406 AAAGDDEVAQIEALIKQRNDARAAKAWALADEARDSLNAMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|209964298|ref|YP_002297213.1| cysteinyl-tRNA synthetase CysS [Rhodospirillum centenum SW] gi|226710848|sp|B6ISG4|SYC_RHOCS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|209957764|gb|ACI98400.1| cysteinyl-tRNA synthetase CysS [Rhodospirillum centenum SW] Length = 456 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 217/474 (45%), Positives = 285/474 (60%), Gaps = 40/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R F IDPSN+R+YVCGPTVYD+AH+GNAR FD+L RLL++ Y Sbjct: 3 LTLYNTLTRSEEAFTPIDPSNVRLYVCGPTVYDYAHVGNARTFSAFDLLARLLKHLY--P 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY RNITD+DDKII+R+++ + I +T++ T QF D L L P +PR Sbjct: 61 RVTYARNITDVDDKIIDRSQRS------GEPIDGVTARTTAQFHADMDALGLLRPDIEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT HIPQMI +I ++ G AY A ++F ++P+YG SRR DE G RV + Sbjct: 115 ATTHIPQMIAMIGRLVEQGFAYAAEGHVLFHVPAMPDYGRLSRRSQDELIAGARVEVAPY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF+LWK + P EPGW+SPWG GRPGWHIECSAM++ +LG VFDIHGGGLDLIFPH Sbjct: 175 KRSPADFVLWKPAKPGEPGWDSPWGTGRPGWHIECSAMTAAHLGAVFDIHGGGLDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN+W+H+GFL + G KMSKS GNF T+ ELL+ +P Sbjct: 235 HENEIAQSRCAHGTAVMANVWMHSGFLTIAGDKMSKSLGNFYTVRELLD-------EFPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-----VLSALYNDL 359 IRLA+L HYR+P+DFT +++ +A+ L +W + A VL+AL +DL Sbjct: 288 EAIRLALLSAHYRQPLDFTKEKIAQAKQALDRWYGVLRGLEEVRAAEVPFDVLAALEDDL 347 Query: 360 NTVSAIQALHKLAR-----ESTKNHDLLPIFNASAHILGIEVCK---------EHLNKNI 405 NT AI LH+LA ++ L A+A +LG + + Sbjct: 348 NTPLAISHLHELATAFHKADAAARPGLAGRLKAAAGLLGFLRQDPDAWFRGTPKGTDGLD 407 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 AIE +Q R K K F+ AD IR L +G +LED G + T WK+ Sbjct: 408 EAAIEAAIQARKEARKAKDFAEADRIRAALLEQGIVLED------GPQGTSWKR 455 >gi|86750485|ref|YP_486981.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] gi|109894930|sp|Q2IUP0|SYC_RHOP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|86573513|gb|ABD08070.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] Length = 493 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 223/490 (45%), Positives = 300/490 (61%), Gaps = 38/490 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL ++ F IDPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 LRLYDTLTKEKRAFAPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGEN 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKI +RA +++P +P+N+AI +T + +QF D L CL PT +PR Sbjct: 63 HVTYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKMGT 177 AT HI +M +I ++ G AY A + ++F +++ P YG+ + R +DE G Sbjct: 123 ATEHIGEMRTIIDRLVAGGFAYVAADHVLFSPAAMNAANSVLPRYGALANRSLDEMIAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIH 234 RV +K++ DF+LWK S P EP W SP G GRPGWHIECSAMS +LG+ FDIH Sbjct: 183 RVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGITMEGRPGWHIECSAMSWKHLGETFDIH 242 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL+FPHHENE+AQSCCA + ++ A W+HNGFL +EG KMSKS GNFITI ELL T Sbjct: 243 GGGIDLVFPHHENEVAQSCCAFQTDRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELLAT 302 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---AV 351 +KFGG SW ++R AM+ THYR PID+TV+ L E +L W + G Sbjct: 303 EKFGGDSWVGEILRFAMIKTHYRSPIDWTVKALDEGHKVLWDWYRDIGDVGPAQQLPGEF 362 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-----HILG-------IEVCKE 399 + L +DLN SAI +H L ++ K +LL N +L I + Sbjct: 363 IDCLADDLNISSAIAFMHSLRKDK-KFAELLATMNFLGFSNAESVLARRPVGVRINLPPA 421 Query: 400 HLNKNIS-----------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 H + IE+ + R K F +D IR +L + G ++D K+ Sbjct: 422 HAEAAVGTVEVLAKPLSKSEIEERIDARTAARARKDFKESDRIRDELAAMGIAIKDGKDA 481 Query: 449 DNGQRMTRWK 458 D G+ +T W+ Sbjct: 482 D-GKPVTTWE 490 >gi|197263729|ref|ZP_03163803.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241984|gb|EDY24604.1| cysteinyl tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 461 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 178/482 (36%), Positives = 259/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + +D L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHQDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +++ + G RV Sbjct: 114 ATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDLEQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWSSPWGEGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAGGEAFEARFVEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + + +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLGLLEQEPDVFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L+Q+RL K K +++AD R +L G ILED G + T W+ Sbjct: 406 AQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|70727478|ref|YP_254394.1| cysteinyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] gi|109894948|sp|Q4L3I9|SYC_STAHJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|68448204|dbj|BAE05788.1| cysteinyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] Length = 466 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 170/481 (35%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I + + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPDIADRYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMDEIIDFIKELVDEGYAYESDGDVYFRTRKFEGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ + A+ L + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVNAAKSGLERIRNSYQLIEERETIATDIVDQSKYIEQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNA----SAHILG 393 I + + +D NT +A+ A + L++ E+ + ++ F + +LG Sbjct: 346 DAIIEQFETVMDDDFNTANAVTAWYDLSKLANKYVLENNTSTQVISRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLKGNKSDMLLDEDIEKLIEERNEARKNKDFARADEIRDMLKEQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|313201928|ref|YP_004040586.1| cysteinyl-tRNA synthetase [Methylovorus sp. MP688] gi|312441244|gb|ADQ85350.1| cysteinyl-tRNA synthetase [Methylovorus sp. MP688] Length = 470 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 181/476 (38%), Positives = 257/476 (53%), Gaps = 43/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K YN+L R+ F I + MYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 16 LKFYNSLAREKQTFVPIVAGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRTSGYD- 74 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA++ ++I +TS+ +D RL + P +P+ Sbjct: 75 -VTYVRNITDIDDKIIKRAQEN------GESIQALTSRFITAMDEDAARLGVMRPDLEPK 127 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI M+ +I +I G AY A+ ++ + SS YG S + +++ + G RV Sbjct: 128 ATEHITGMLDMIAALIEKGFAYPADNGDVFYSVSSFAGYGKLSGKSLEDLRAGERVEIDQ 187 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAM + +LG FDIHGGG DL FP Sbjct: 188 YKRDPMDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMGACHLGPHFDIHGGGQDLQFP 247 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 248 HHENEIAQSEAANGC-TFVNYWMHNGFIRVDDEKMSKSLGNFFTIRQVLE-------KYD 299 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVLS 353 A V+R +L YR P++++ L +A L++ + + Sbjct: 300 AEVVRFFILRAQYRSPLNYSDHHLDDARQALTRLYTALRGLALPTFTIDWQQPQAARFKA 359 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG----------IEVCKEHLNK 403 A+ +D NT A L +LA E + L A E Sbjct: 360 AMDDDFNTSEAFAVLFELASEVNRTASLADAALLKALAGLLGLLQRDPETFLQGGESAQG 419 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+ +Q RL + K F+ AD IRKQL +G +LED + T W++ Sbjct: 420 RSADEIEQFIQLRLQARQSKNFAEADRIRKQLADEGILLEDS------PQGTSWRR 469 >gi|301059000|ref|ZP_07199966.1| cysteine--tRNA ligase [delta proteobacterium NaphS2] gi|300446881|gb|EFK10680.1| cysteine--tRNA ligase [delta proteobacterium NaphS2] Length = 484 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 181/503 (35%), Positives = 259/503 (51%), Gaps = 69/503 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YN+ RK F+ ++ + +YVCG TVYD HIG+AR IVFDVL R R Sbjct: 1 MPLKLYNSSIRKKEVFKPLNDGKVGLYVCGVTVYDLCHIGHARSTIVFDVLARYFRARGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN TDIDDKIIERA+ + A + + F +D +L L + Sbjct: 61 D--VTYVRNFTDIDDKIIERAKL------LKKAPKELAREFIDAFYEDMGKLGVLKADVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT+++ MI + Q ++ G+AY ++ F S P YGS S R +++ + G+RV Sbjct: 113 PRATDYVEDMIEMTQTLMDRGYAYTEGGDVYFSVDSYPGYGSLSGRNLEDMRAGSRVAVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + P EP W SPWG GRPGWH+ECS MS+ +LG FDIHGGG DL+F Sbjct: 173 DRKRHPMDFVLWKSAKPGEPQWPSPWGPGRPGWHLECSVMSNRHLGPTFDIHGGGRDLLF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS CA+ E A W+HNGF+ +E KMSKS GNF+TI + L + + Sbjct: 233 PHHENERAQSMCANDGE-FARYWVHNGFVTVESEKMSKSLGNFLTIRDAL-------KKY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------------------TS 341 V+RL +L HYR P+DF+ + + + L + + S Sbjct: 285 HPEVLRLFLLSKHYRSPLDFSAKDVANLQSGLVRIYRMLQRLNDLLGPGDGEKTSEDSLS 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------------LLPI 384 + G + +DLNT A+ + RE + D Sbjct: 345 GASGEFYEKFCEMMDDDLNTAGALGLVFDKVREMNRLMDPDGNGAVSEKALSSLKSQRDQ 404 Query: 385 FNASAHILGI------EVCKEHLNKNISI---AIEKLVQERLILLKMKKFSSADYIRKQL 435 + ILG+ E ++ + + + IE LV++R K ++ +D IR QL Sbjct: 405 LLRAGEILGLFQQNPAEFFEQLASPSKDVNTDEIEALVKKRSQARVAKDWALSDTIRDQL 464 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + G +LED G + T W+ Sbjct: 465 KEMGVVLED------GPQGTTWR 481 >gi|93005831|ref|YP_580268.1| cysteinyl-tRNA synthetase [Psychrobacter cryohalolentis K5] gi|109894926|sp|Q1QC19|SYC_PSYCK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|92393509|gb|ABE74784.1| cysteinyl-tRNA synthetase [Psychrobacter cryohalolentis K5] Length = 488 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 186/498 (37%), Positives = 262/498 (52%), Gaps = 63/498 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++ IY++L + F+ + + MYVCG TVYD+ HIG+AR M+ FD+ R L Sbjct: 12 SQLVIYDSLTGRKQAFKPLATGKVGMYVCGMTVYDYCHIGHARVMVGFDMAVRWLAQLGY 71 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRNITDIDDKII RA + + I +T + +D T L CL+P + Sbjct: 72 D--VNYVRNITDIDDKIITRAAEN------GEEIGTLTQRFITAMHEDATALGCLSPDAE 123 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HI +M +I+ ++ + +AY + ++ + S +YG S+R +D+ + G+RV Sbjct: 124 PRATDHIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDDMQAGSRVEV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K+NP DF+LWK + P EP W S WG+GRPGWHIECSAMS+ LG FDIHGGG DL Sbjct: 184 ENDKRNPFDFVLWKAAKPDEPQWASAWGQGRPGWHIECSAMSTKCLGNTFDIHGGGHDLQ 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A E A W+H GF+N++G KMSKS GNF TI +++ Sbjct: 244 FPHHENEIAQSEAATGCE-YARNWMHVGFINVDGEKMSKSLGNFFTIRDVMA-------K 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------IIDPA---- 350 + +R +L +HYR ++F+ L E+ LS+ Q IID A Sbjct: 296 YLPETVRFFLLSSHYRSQVNFSDSALDESHNSLSRLYQALKVAEQQKGKVLIIDEALINN 355 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPIFNASAHIL 392 + A+ +D N+ +AI L LAR+ K L A A L Sbjct: 356 AYASAVGQDFIKAMNDDFNSSTAISVLFGLARDINKASKAQDVETAWQLAQHLKALAQTL 415 Query: 393 GI--EVCKEHLNKNI---------SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I + ++ L I AI+ L+ ER K F+ AD IR QL+ G Sbjct: 416 NILQQPVQQFLQAVIGEVAEDSLTDEAIDGLIIERADAKTNKNFARADEIRVQLKEAGIE 475 Query: 442 LEDYKNPDNGQRMTRWKQ 459 LED + T W++ Sbjct: 476 LEDSRA------GTTWRR 487 >gi|71065916|ref|YP_264643.1| cysteinyl-tRNA synthetase [Psychrobacter arcticus 273-4] gi|109894925|sp|Q4FRZ9|SYC_PSYA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71038901|gb|AAZ19209.1| cysteinyl-tRNA synthetase [Psychrobacter arcticus 273-4] Length = 488 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 181/498 (36%), Positives = 259/498 (52%), Gaps = 63/498 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++ IY++L + F+ + + MYVCG TVYD+ HIG+AR M+ FD+ R L Sbjct: 12 SQLVIYDSLTGRKQSFKPLVEGKVGMYVCGMTVYDYCHIGHARVMVGFDMAVRWLAQLGY 71 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRNITDIDDKII RA + + I +T + +D T L C +P + Sbjct: 72 D--VNYVRNITDIDDKIIARAAEN------GEEIGALTQRFITAMHEDATALGCQSPNAE 123 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT++I +M +I+ ++ + +AY + ++ + S +YG S+R +D+ + G+RV Sbjct: 124 PRATDYIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDDMQAGSRVEV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K+NP DF+LWK + P EP W S WG+GRPGWHIECSAMS+ LG FDIHGGG DL Sbjct: 184 ENDKRNPFDFVLWKAAKPDEPQWVSSWGQGRPGWHIECSAMSTKCLGNTFDIHGGGHDLQ 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A E A W+H GF+N++G KMSKS GNF TI +++ Sbjct: 244 FPHHENEIAQSEAATGCE-YARNWMHVGFINVDGEKMSKSLGNFFTIRDVMA-------K 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------SKGIIDP 349 + +R +L +HYR ++F+ L EA LS+ Q +I+ Sbjct: 296 YLPETVRFFLLSSHYRSQVNFSDSALDEAHNSLSRLYQALKVVEQQKGQTLIVDDALINN 355 Query: 350 A--------VLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPIFNASAHIL 392 A + A+ +D N+ +AI L LAR+ K L A A L Sbjct: 356 AYASAPGQDFIKAMNDDFNSSTAISVLFGLARDINKASKVEDIESAWQLAQQLKALAQTL 415 Query: 393 GIE-----------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I + + + AI+ L+ ER K F+ AD IR QL+ G Sbjct: 416 NILQQPVQQFLQAVIGEAAEDGLTDEAIDSLIIERADAKTNKNFARADEIRIQLKDAGIE 475 Query: 442 LEDYKNPDNGQRMTRWKQ 459 LED + T W++ Sbjct: 476 LEDSRA------GTTWRR 487 >gi|113867241|ref|YP_725730.1| cysteinyl-tRNA synthetase [Ralstonia eutropha H16] gi|123134207|sp|Q0KCA9|SYC_RALEH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|113526017|emb|CAJ92362.1| Cysteinyl-tRNA synthetase [Ralstonia eutropha H16] Length = 462 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 181/479 (37%), Positives = 252/479 (52%), Gaps = 45/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR E Sbjct: 4 LNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGYE- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+NITDIDDKII RA + + I +T++ Q +D L + P H+PR Sbjct: 63 -VTYVQNITDIDDKIIRRAAEN------GETIGELTTRFIQYMHEDAAALGVIRPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ +I + G AY+A + ++ + YG S + +++ + G RV Sbjct: 116 ATDYVPQMLDMIGKLEAKGLAYQASDGDVNYSVRKFAGYGKLSGKSLEDLRAGERVSAND 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W+S WG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKSAKASEPPESKWDSKWGAGRPGWHIECSAMSCTLLGEHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI E+L + Sbjct: 236 QFPHHENEIAQSEGASG-KPFVNMWMHNGFVRINDEKMSKSLGNFFTIREVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPA 350 S+ A V+R +L HYR P++++ L +A L++ Sbjct: 288 SYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKDSQPGGCAVDWDEPHARR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIEVCKEHL------- 401 A+ +D NT A+ L LA E + A LG+ H Sbjct: 348 FAEAMGDDFNTPIAMSVLFDLASEINRTGSTAAARQLKGLAGTLGLLERDPHTFLQGGRS 407 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+ R + F+ AD IR QL G +LED T W++ Sbjct: 408 DDGISPEQIETLIAARKTAKVERNFAEADRIRAQLLEAGIVLEDKPGGA-----TEWRR 461 >gi|296333091|ref|ZP_06875545.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672793|ref|YP_003864464.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149707|gb|EFG90602.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411036|gb|ADM36154.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] Length = 466 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 254/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I+ + + + +D L C Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPAISERFIKAYFEDVGALGCRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVMENMDAIIDFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 ++R ML HYR PI+++ + L + ++ ++ Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLENTKSAFNRLKTAYSNLQHRLNSSTNLTEDDDQWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAREST----KNHDL-------LPIFNASAH 390 A A+ +D NT +AI L LA+ + K+H + +F+ Sbjct: 345 EKVEEHRKAFEEAMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|110633319|ref|YP_673527.1| cysteinyl-tRNA synthetase [Mesorhizobium sp. BNC1] gi|110284303|gb|ABG62362.1| cysteinyl-tRNA synthetase [Chelativorans sp. BNC1] Length = 506 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 248/491 (50%), Positives = 322/491 (65%), Gaps = 33/491 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+YNTL R+ EF +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 15 KALKLYNTLTRRDEEFVPLDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRQLYG 74 Query: 63 EKCVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 + VTYVRNITD+DDKI RA + +N+AI +T + QF D L C Sbjct: 75 DDHVTYVRNITDVDDKINARALRDFGEDITAGRLTLNEAIRRVTERTAAQFHADVAALGC 134 Query: 117 LAPTHQPRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 LAPTH+PRAT + M LIQ +I GHAY A EI+FDT+S+P+YG S+R+ Sbjct: 135 LAPTHEPRATEFVLPRTDGKADMASLIQTLIDRGHAYAAKGEILFDTASMPDYGQLSKRR 194 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSA 221 +++Q+ G RV HK+NP+DF+LWK S+ EPGWE + RGRPGWHIECSA Sbjct: 195 LEDQQAGARVAVDPHKRNPSDFVLWKESSAEEPGWEGRFTFEGKPLVIRGRPGWHIECSA 254 Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS+ YLG+VFDIHGGGLDLIFPHHENEIAQS CA AN W+HNGF+ +EG+KM+KS Sbjct: 255 MSAAYLGEVFDIHGGGLDLIFPHHENEIAQSRCAHGTPVMANYWLHNGFVQVEGKKMAKS 314 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS 341 GNF+TI++LL T+ FGGR WP V+RLA+LMTHYREP+DF++++L EAE +L W + Sbjct: 315 EGNFVTIHDLLATENFGGRKWPGEVLRLAILMTHYREPLDFSLRKLEEAEAVLDGWYRVV 374 Query: 342 TSKGIID---PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEVC 397 + AV AL +DL T +AI LH L ++ + + A+A +LG+ Sbjct: 375 GDAKHQEGDSGAVRRALLDDLGTPAAITVLHDLRAQAARGSEAAKADLKANAVLLGLLTQ 434 Query: 398 --------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 K A+E+ V RL LL+ K F AD IR++L +G L DYK+P+ Sbjct: 435 SQDQWFSGKAADAAIDEAAVEERVAARLSLLRAKNFPEADRIREELSGRGIQLMDYKDPE 494 Query: 450 NGQRMTRWKQK 460 G+R T+W+ K Sbjct: 495 TGERRTKWEVK 505 >gi|323526548|ref|YP_004228701.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1001] gi|323383550|gb|ADX55641.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1001] Length = 465 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 178/484 (36%), Positives = 256/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQAGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 E--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIAALHEDADALGIARPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIETLEANGYAYQAKDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKRS EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRSKAGEPADTGWDSKYGRGRPGWHIECSAMGCSLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QPFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + A V+R + HYR P++++ + +A L + T A Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALGRLYTALTDVAPDGAALDWNEAHA 345 Query: 351 --VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------VCKEH 400 +A+ +D NT A+ L +LA E + D L + +LG+ ++ Sbjct: 346 QRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRSLGAVLGLLGREPRAYLQQA 405 Query: 401 LNKNIS-----IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + AIE + ER + K +++AD IR +L G LED +T Sbjct: 406 AGAAVEGALEPAAIEAKIAERAAAKQAKDYAAADRIRAELLEAGVALEDKPGG-----LT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|145633713|ref|ZP_01789439.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 3655] gi|144985473|gb|EDJ92294.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 3655] Length = 459 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 179/480 (37%), Positives = 260/480 (54%), Gaps = 46/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S E W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENELSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGI------EVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ + + Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDTEKANGLAARLRELGAILGLLQQDPEKFLQAG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + IE L+++R K +++AD R +L + G +LED G T W+++ Sbjct: 406 SDDDEVAKIEALIKQRNEARAAKDWAAADAARNELTAMGIVLED------GANGTTWRKQ 459 >gi|314932753|ref|ZP_07840122.1| cysteine--tRNA ligase [Staphylococcus caprae C87] gi|313654434|gb|EFS18187.1| cysteine--tRNA ligase [Staphylococcus caprae C87] Length = 466 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMQEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGKGRPGWHIECSVMAYHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREAIATDLEEHSEYIDQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D NT +A+ A + LA+ + K H ++ + +LG Sbjct: 346 ETILRQFEAVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLHRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + E+ N+ + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLKGENENELLDEDIEKLIEERNEARKNKDFARADEIRDMLKERNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|229828827|ref|ZP_04454896.1| hypothetical protein GCWU000342_00910 [Shuttleworthia satelles DSM 14600] gi|229791990|gb|EEP28104.1| hypothetical protein GCWU000342_00910 [Shuttleworthia satelles DSM 14600] Length = 468 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 174/485 (35%), Positives = 259/485 (53%), Gaps = 54/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ EF I+P ++MYVCGPTVY++ HIGNARPMIVFD R + Y + Sbjct: 1 MRIFNTLTRRKEEFVPIEPGKVKMYVCGPTVYNYIHIGNARPMIVFDTFRRYMEYRGYQ- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII++A++E S I+ + + KD L + PR Sbjct: 60 -VTYVSNFTDVDDKIIKKAKEE------GKDASEISERYIAECQKDMEALNVRPASVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I +M++++ ++I G+AY + + + T + +YG S + I++ + G R + Sbjct: 113 ATREIGEMVHMVSDLIDKGYAYPVEDGTVYYKTRAFHSYGKLSHKNIEDLEGGHRDIKVT 172 Query: 184 H--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK EP W+SPW +GRPGWHIECS MS YLG DIH GG DLI Sbjct: 173 GELKRDPLDFVLWKPKKEGEPYWDSPWCQGRPGWHIECSCMSKRYLGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ +E A W+HNGFLN++ RKMSKS GNF T+ E+ + Sbjct: 233 FPHHENEIAQSEAANGVE-FARYWMHNGFLNIDHRKMSKSLGNFFTVREVC-------QK 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------------P 338 + V+R ML HYR P++F+ + A++ L + Sbjct: 285 YSGQVLRFFMLSAHYRSPLNFSADLMEAAKVSLERILTAGENLRFLAENARIDRMSEEER 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK------NHDLLPIF----NAS 388 + A+ +D NT A+ A+ +L + + +L F + Sbjct: 345 KILADSDQYMDKFNGAMDDDCNTADALAAIFELVKFINSRAAGQISRELADQFYQRLDTL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + G+ + ++ N+ I+ L++ER + K F+ AD IR L ++G +LED + Sbjct: 405 TQVCGLILDQKE--DNLDAEIDSLIEERQEARRQKDFARADRIRDDLLARGIVLEDTREG 462 Query: 449 DNGQR 453 R Sbjct: 463 VKWHR 467 >gi|312898320|ref|ZP_07757710.1| cysteinyl-tRNA synthetase [Megasphaera micronuciformis F0359] gi|310620239|gb|EFQ03809.1| cysteinyl-tRNA synthetase [Megasphaera micronuciformis F0359] Length = 482 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 168/503 (33%), Positives = 257/503 (51%), Gaps = 65/503 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++ +YNTL RK F+ + P ++MYVCG T Y+ +H+GNARP + +DV+ R L++ Sbjct: 1 MMRELTVYNTLSRKKEAFKPVTPGQVKMYVCGITPYNHSHMGNARPFVTWDVIKRYLKHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 VT+++N TD+DDKII A E + I ++ + + +L Sbjct: 61 GY--AVTHIQNFTDVDDKIINAANGEEV------SWDTIANRYIASYFEVMDKLHIQRAD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 PR + H+ +I +I +I +GHAYE + ++ + S +YG S R +D+ G R+ Sbjct: 113 KYPRVSEHMDDIIAMISKLIENGHAYELDGDVYYRVQSFEHYGELSHRSLDDMMAGARIE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG+ FD HGGG DL Sbjct: 173 VDDRKENPMDFALWKAAKPSEPSWDSPWGKGRPGWHIECSAMSLKYLGEPFDFHGGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ+ N W+HNGF+ ++ KMSKS NF + ++LE Sbjct: 233 IFPHHENEIAQTEACCNHGPMVNYWVHNGFITIDSEKMSKSLNNFFLVKDVLE------- 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK-----------WPQTSTSKGIIDP 349 + +R ++ HYR P+DF+ +RLTE L + Q S K + Sbjct: 286 HYSPDALRYFLISNHYRSPLDFSDERLTEMTRSLERLGTAIDNTLWLLEQPSGGKSELSA 345 Query: 350 A-----------VLSALYNDLNTVSAIQALHKLARESTKN----------------HDLL 382 A +A+ +D NT A A+ +LA++ ++ Sbjct: 346 ALLADAQRTMEDFETAMCDDFNTALASAAMFELAKKVNIYTSEVSTNGVPADSAVLSEVK 405 Query: 383 PIFNASAHILGIEVCK------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 IF ILG+ + + +K+ + ++ +++ R K+++ AD IR +L Sbjct: 406 RIFKTMTDILGVLEDRWNGTAGKADDKDYAALMDVILELRQECRAQKQYALADAIRDKLS 465 Query: 437 SKGFILEDYKNPDNGQRMTRWKQ 459 G +ED + RWK+ Sbjct: 466 DLGITIEDS------PQGARWKK 482 >gi|153813240|ref|ZP_01965908.1| hypothetical protein RUMOBE_03656 [Ruminococcus obeum ATCC 29174] gi|149830653|gb|EDM85744.1| hypothetical protein RUMOBE_03656 [Ruminococcus obeum ATCC 29174] Length = 469 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 173/492 (35%), Positives = 250/492 (50%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ EF ++ +RMYVCGPTVY+ HIGNARPMI+FD + R L Y + Sbjct: 1 MKLFNTMSRRKEEFVPLEEGKVRMYVCGPTVYNLIHIGNARPMIIFDTVRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVSAEEISQRYIAECKKDMAGMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI +IQ +I +AY A+ + F YG S + +D+ + G R V Sbjct: 113 ATQEIDGMIDMIQTLIDKEYAYPVADGTVYFRVKKFKEYGKLSHKNLDDLQSGFRSLQVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP W+SPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEDQKEDPLDFVLWKPKKEGEPFWKSPWCDGRPGWHIECSVMSKKYLGEEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS C + + A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 VFPHHENEIAQSECCNGV-PFAKYWMHNAFLNIDNRKMSKSLGNFRTVREI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------------ 342 + V+R ML HYR P++F+ + ++ L + + + Sbjct: 285 QYDLQVLRFFMLNAHYRSPLNFSADLMESSKNALERITEAAARLRDRQAAATVQEATEDE 344 Query: 343 -----SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 + ++ +D NT A+ A+ +L + + N L + Sbjct: 345 KKLMQEEAAFVTKFEESMDDDFNTADALAAVFELVKFANTNVQEGSSKEFAGHTLEVMTK 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LG+ + K+ + + IE L+ ER K K F+ AD IR L KG L+D + Sbjct: 405 LCDVLGLTLEKKE--EILDEEIENLIAERQAARKAKDFARADEIRGLLLDKGIELKDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|73663535|ref|YP_302316.1| cysteinyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|109894949|sp|Q49V39|SYC_STAS1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72496050|dbj|BAE19371.1| cysteinyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 466 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 166/481 (34%), Positives = 262/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+R+++ +++++ I + F +D L T PR Sbjct: 61 -VVFVSNFTDVDDKLIKRSKE------LDESVETIADRYIDAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ +I I++++ G+AYE+ ++ F T +YG S + +++ K+G R+ + Sbjct: 114 VMNHMDDIINFIKDLVDEGYAYESGGDVYFRTRKFQDYGKLSHQSLNDLKVGARIEQGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKQAKPGEISWESPFGEGRPGWHIECSVMAYHELGATIDIHAGGTDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNF+ +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFVLVHDII-------KQIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------------- 348 V+R M+ HYR PI++ ++ + A+ L + + + + Sbjct: 286 DVLRFFMISVHYRSPINYNMELVEAAKSGLERVRNSYQAIEEREAIATDIEAQSDYIAEI 345 Query: 349 ----PAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 + + +D NT +AI A + LA+ + K + +L F + +LG Sbjct: 346 DKILEQFETVMNDDFNTANAITAWYDLAKLANKYVLENTTSTKVLGRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + ++ + +E L++ER K K F+ AD IR QL+ + ILED +R Sbjct: 406 VPLKGKDSDELLDEEVEALIEERNNARKDKDFARADEIRDQLKEQNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|197286005|ref|YP_002151877.1| cysteinyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227356519|ref|ZP_03840906.1| cysteinyl-tRNA synthetase [Proteus mirabilis ATCC 29906] gi|229470558|sp|B4F1M6|SYC_PROMH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|194683492|emb|CAR44297.1| cysteinyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227163275|gb|EEI48202.1| cysteinyl-tRNA synthetase [Proteus mirabilis ATCC 29906] Length = 463 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 259/482 (53%), Gaps = 49/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I I MYVCG T+YD HIG+ R + FD + R LRY + Sbjct: 2 LKIFNTLTRQKEEFKPIHKGKIGMYVCGITIYDLCHIGHGRTFVAFDAITRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN+TD+DDKII+RA I N+ +T++ + KD L L P +PR Sbjct: 61 -VNYVRNVTDVDDKIIKRA------IENNETCEQLTTRMLAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A N +++F + P+YG SR+ +++ + G RV Sbjct: 114 ATHHIAEIIALTETLIKRGHAYVAENGDVMFAIDTDPDYGLLSRQDLEQLQAGARVEVAN 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S P EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKPGEPSWTSPWGEGRPGWHIECSAMNGKELGHHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSTCAHDG-PYVNYWMHSGMVMVDKEKMSKSLNNFFTIRDVLA-------YYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP---------QTSTSKGIIDPAVLSA 354 A +R +L HYR +++T + L +A L + + + A Sbjct: 286 AETVRYFLLSGHYRSQLNYTEENLKQARTALERLYTSLRGTDANAQPAGGEAFEAQFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L LARE + + L + A +LG+ + Sbjct: 346 MNDDFNTPEAYSVLFDLAREVNRLKTVNMEAANGLAAVLRKLAKVLGLLEQQPEHFLQSG 405 Query: 399 -EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + + IE L+Q+R K K +++AD R L + G +LED G + T W Sbjct: 406 AQADDADEVEKIEALIQQRNDARKNKDWAAADAARDALTAMGIVLED------GPQGTTW 459 Query: 458 KQ 459 ++ Sbjct: 460 RR 461 >gi|52424677|ref|YP_087814.1| cysteinyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E] gi|52306729|gb|AAU37229.1| CysS protein [Mannheimia succiniciproducens MBEL55E] Length = 476 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 184/481 (38%), Positives = 259/481 (53%), Gaps = 45/481 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +KI+NTL R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY Sbjct: 17 PSMLKIFNTLTREKEEFKPINPNKVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRYLG 76 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + + YVRNITD+DDKII+RA + N+ + + + KD L L P Sbjct: 77 YD--LRYVRNITDVDDKIIKRA------LENNETCDQLVERMIAEMHKDFDALNILRPDV 128 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HIP++I +++ +I GHAY A + +++FD S YG+ SR+ +++ + G RV Sbjct: 129 EPRATKHIPEIIAMVETLIRRGHAYVAEDGDVMFDVESFQKYGALSRQNLEQLQAGARVE 188 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+ LG FDIHGGG DL Sbjct: 189 IKSVKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNDKELGNHFDIHGGGSDL 248 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA E N W+H G L + KMSKS NF TI ++L Sbjct: 249 MFPHHENEIAQSCCAHDGE-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDILT------- 300 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVL 352 + A +R L YR +D++ + + A L + ++ Sbjct: 301 KYDAESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCETVEIPAEDQYVIDFK 360 Query: 353 SALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A+ L +LARE K + L A +LG+ + Sbjct: 361 TAMDDDFNTPGALAVLFELAREINKLKTEDQTKANQLASRLKQLAGVLGLLEQAPETFLQ 420 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE L++ R K +++AD R +L + G +LED G + T W+ Sbjct: 421 GDAADAEVSKIEALIKRRNEARAAKDWAAADAARNELTAMGVVLED------GAKGTTWR 474 Query: 459 Q 459 + Sbjct: 475 K 475 >gi|311070741|ref|YP_003975664.1| cysteinyl-tRNA synthetase [Bacillus atrophaeus 1942] gi|310871258|gb|ADP34733.1| cysteinyl-tRNA synthetase [Bacillus atrophaeus 1942] Length = 466 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 166/489 (33%), Positives = 262/489 (53%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I A + + + + I+ + + + +D L C Sbjct: 61 D--VQYVSNFTDVDDKLIRAADE------LGEDVPTISERFIKAYFEDVGALGCKKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I +Q +I G+AYE++ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVTENMDAIIDFVQELIKKGYAYESDGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W++PWG+GRPGWHIECSAM YLG+ DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKDGEISWDAPWGKGRPGWHIECSAMVKKYLGEQIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDP--- 349 ++R ML HYR PI+++ + L + ++ +ST+ D Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLENTKNAFNRLKTAYSNLLHRLNSSTNLTADDDEWL 344 Query: 350 --------AVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L +LA+ + + + +F+ A Sbjct: 345 KKIEEHRTAFEEAMDDDFNTANAISILFELAKHANYYLQEDNTADKVINAFIEMFDRIAS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + ++ L + +E+L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGLTMGEQEL---LDQDVEELIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|289450440|ref|YP_003475062.1| cysteine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184987|gb|ADC91412.1| cysteine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 473 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 178/484 (36%), Positives = 254/484 (52%), Gaps = 59/484 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++++L + EF ++P ++MY CGPTVY++ H+GNARP +VFD+L R L Y + Sbjct: 1 MQLFDSLTNQKREFIPLEPGKVKMYSCGPTVYNYFHLGNARPFVVFDLLRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDK+I RA +E + + K ++ KD L T QPR Sbjct: 60 -VTFVQNFTDIDDKMIRRANEE------GVTLRELADKYIAEYFKDADGLGIKRATIQPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEK 182 AT I +I + ++ GHAY + + + F T S P+YG S +DE + G RV Sbjct: 113 ATESIDAIIEQVGKLVAGGHAYVSTDGVYFSTRSFPDYGKLSHFHLDELEAGASERVNTG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K +PADF +WK P EP W SPWG GRPGWHIECS+M + YLG DIH GG DLIF Sbjct: 173 ENKHDPADFAVWKFKKPGEPAWPSPWGEGRPGWHIECSSMINRYLGPTIDIHSGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA ++ A+ W+HNGF+N+ KMSKS GNF T+ +++ + + Sbjct: 233 PHHENEIAQSECATG-KQLAHYWLHNGFINVNNEKMSKSLGNFFTVRDVV-------KHF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------------------- 339 P VIR +L HYR PI+F+ + L A+ L++ Sbjct: 285 PYDVIRFFLLTGHYRSPINFSDELLQAAQTGLTRLRNCYSAVQFKLKSKAESAESADKAA 344 Query: 340 -----TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPI 384 S A ++A+ +DLNT A+ A+ RE +L Sbjct: 345 AAAESVRKSIDTARAAFIAAMDDDLNTPDALAAIFSWVREVNTLITSSPSAADCQAVLDF 404 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ +LG+ + + I I LV+ R K K F+ AD +RKQ+ G+ L D Sbjct: 405 FDELGDVLGL---RWQCEEAIPTEILALVEARTQAKKAKNFTLADELRKQITEAGYTLMD 461 Query: 445 YKNP 448 Sbjct: 462 TPQG 465 >gi|160937871|ref|ZP_02085229.1| hypothetical protein CLOBOL_02763 [Clostridium bolteae ATCC BAA-613] gi|158439097|gb|EDP16851.1| hypothetical protein CLOBOL_02763 [Clostridium bolteae ATCC BAA-613] Length = 469 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 183/492 (37%), Positives = 258/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL RK EF + P ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRKKEEFVPLTPGEVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E ++ + ++ KD + T P+ Sbjct: 60 -VRYVSNFTDVDDKIIKKAIEE------GVDADTVSRRYIEECKKDMAAMNVKPATVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +IQ +I HAY A + + F T S YG S + +DE + G R V Sbjct: 113 ATQEICGMLEMIQTLIDKNHAYVAGDGTVYFRTGSFKEYGKLSHKNLDELQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEGKEDPNDFVLWKPKKEGEPFWESPWCDGRPGWHIECSVMSKRYLGEQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS CA+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSECAN-DKNFATYWMHNAFLNIDNKKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------PQTSTS 343 + V+R ML HYR P++F+ + ++ L + +T+ Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERILTCVEKLRDLEAKASDSSKTAGE 344 Query: 344 KGIIDPA------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 + ++ A A+ +D NT AI A+ +L + + D + + Sbjct: 345 QATMEEADKLRGKYEEAMDDDFNTADAISAIFELVKLANTTADESGTREFVSYMKTMIEE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + IE++++ R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVLGI--ITEKKEEVLDSEIEEMIEARQQARKDKNFALADEIRGKLLDMGIVLEDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|23097554|ref|NP_691020.1| cysteinyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] gi|30316161|sp|Q8ETZ9|SYC_OCEIH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|22775777|dbj|BAC12055.1| cysteinyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] Length = 468 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 174/489 (35%), Positives = 252/489 (51%), Gaps = 55/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYNTL R+ F+ ++ ++MYVCGPTVY++ HIGNARP IVFD + R L Y Sbjct: 1 MTIQIYNTLTRQKEIFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVRRYLEYRGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDKII+ A+ + + + ++ + +++D L T Sbjct: 61 D--VDYVLNFTDVDDKIIKTAKD------VGEEVPVLADRFVNAYLEDVGALGVKKATKN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + + +I I +I G+AYEA+ ++ F S YG S + IDE + G R+ Sbjct: 113 PRVMDTMDDIIAFISALIEKGYAYEADGDVYFKPRSFDTYGKLSHQSIDELRSGARIQVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK++ E W+SPWG GRPGWHIECSAM +LG DIH GG DL F Sbjct: 173 EKKEDPLDFALWKQAKDDEIAWKSPWGEGRPGWHIECSAMVKKHLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + E AN W+HNG++N++ KMSKS GNF+ +L++ Sbjct: 233 PHHENEIAQSEAMNG-ETFANYWMHNGYINIDNEKMSKSLGNFVLARDLIQAH------- 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI+FT L A+ L + + Sbjct: 285 DPRVLRFFMLSVHYRNPINFTEALLESAKTSLERIQTAYHNLSHRRDSSLNLTNDDAKWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFN----ASAH 390 + +D NT +AI L L++E+ + +++ F Sbjct: 345 QLVSAAMSKFEQDMDDDFNTANAISVLFDLSKEANVYLQENQTSTEVIDAFQDAISQILT 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI + ++ + IE L++ER K + F+ AD IR L+ KG +LED Sbjct: 405 VLGINILEDE-ETLLDETIEALIKERNEARKNRNFARADEIRDMLKEKGIVLEDT----- 458 Query: 451 GQRMTRWKQ 459 + RWK+ Sbjct: 459 -PQGVRWKR 466 >gi|73540824|ref|YP_295344.1| cysteinyl-tRNA synthetase [Ralstonia eutropha JMP134] gi|109894927|sp|Q473D3|SYC_RALEJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72118237|gb|AAZ60500.1| cysteinyl-tRNA synthetase [Ralstonia eutropha JMP134] Length = 462 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 178/479 (37%), Positives = 252/479 (52%), Gaps = 45/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR + Sbjct: 4 LNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+NITDIDDKII RA + + I +T++ Q +D L + P H+PR Sbjct: 63 -VTFVQNITDIDDKIIRRAAEN------GETIGQLTTRFIQYMHEDADALGIVRPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ LI + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 116 ATDYVPQMLDLIGKLEANGLAYQATDGDVNYSVRKFDGYGKLSGKSLEDLRAGERVTAND 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + EP W S WG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKSAKESEPPESKWNSKWGMGRPGWHIECSAMSCTLLGEHFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI E+L + Sbjct: 236 QFPHHENEIAQSEGASG-KPFVNVWMHNGFVRVNDEKMSKSLGNFFTIREVL-------K 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPA 350 + A V+R +L HYR P++++ L +A L++ + Sbjct: 288 EYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKDTQPGGYAVDWEEAHAKR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL------- 401 A+ +D NT A+ L LA E + A LG+ H Sbjct: 348 FAEAMCDDFNTPIAVSVLFDLASEVNRTGSSVAARQLKGLAGTLGLLERDPHTFLQGGKK 407 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+ R + F+ AD IR L + G +LED T W++ Sbjct: 408 VDGPSPDEIEGLIAARKTAKAERNFAEADRIRADLLAAGIVLEDKPGGA-----TEWRR 461 >gi|16077162|ref|NP_387975.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221307906|ref|ZP_03589753.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221312227|ref|ZP_03594032.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317161|ref|ZP_03598455.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321424|ref|ZP_03602718.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi|549024|sp|Q06752|SYC_BACSU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|289284|gb|AAA21798.1| cysteinyl-tRNA synthetase [Bacillus subtilis] gi|467482|dbj|BAA05328.1| cysteinyl-tRNA synthetase [Bacillus subtilis] gi|499303|emb|CAA52167.1| cysteine--tRNA ligase [Bacillus subtilis subsp. subtilis str. 168] gi|2632361|emb|CAB11870.1| cysteinyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 466 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 163/489 (33%), Positives = 253/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL R+ F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I+ + + + +D L C Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTISERFIKAYFEDVGALGCRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++ +I + ++ G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 ++R ML HYR PI+++ + L + S+ ++ Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSSTNLTEDDDQWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAREST----KNHDL-------LPIFNASAH 390 A + +D NT +AI L LA+ + K+H + +F+ Sbjct: 345 EKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG + ++ L + IE L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGFSLGEQEL---LDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|187631655|sp|Q11JR3|SYC_MESSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 497 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 248/491 (50%), Positives = 322/491 (65%), Gaps = 33/491 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K +K+YNTL R+ EF +DP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR YG Sbjct: 6 KALKLYNTLTRRDEEFVPLDPANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRQLYG 65 Query: 63 EKCVTYVRNITDIDDKIIERA------RQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 + VTYVRNITD+DDKI RA + +N+AI +T + QF D L C Sbjct: 66 DDHVTYVRNITDVDDKINARALRDFGEDITAGRLTLNEAIRRVTERTAAQFHADVAALGC 125 Query: 117 LAPTHQPRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 LAPTH+PRAT + M LIQ +I GHAY A EI+FDT+S+P+YG S+R+ Sbjct: 126 LAPTHEPRATEFVLPRTDGKADMASLIQTLIDRGHAYAAKGEILFDTASMPDYGQLSKRR 185 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSA 221 +++Q+ G RV HK+NP+DF+LWK S+ EPGWE + RGRPGWHIECSA Sbjct: 186 LEDQQAGARVAVDPHKRNPSDFVLWKESSAEEPGWEGRFTFEGKPLVIRGRPGWHIECSA 245 Query: 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKS 281 MS+ YLG+VFDIHGGGLDLIFPHHENEIAQS CA AN W+HNGF+ +EG+KM+KS Sbjct: 246 MSAAYLGEVFDIHGGGLDLIFPHHENEIAQSRCAHGTPVMANYWLHNGFVQVEGKKMAKS 305 Query: 282 NGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS 341 GNF+TI++LL T+ FGGR WP V+RLA+LMTHYREP+DF++++L EAE +L W + Sbjct: 306 EGNFVTIHDLLATENFGGRKWPGEVLRLAILMTHYREPLDFSLRKLEEAEAVLDGWYRVV 365 Query: 342 TSKGIID---PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGIEVC 397 + AV AL +DL T +AI LH L ++ + + A+A +LG+ Sbjct: 366 GDAKHQEGDSGAVRRALLDDLGTPAAITVLHDLRAQAARGSEAAKADLKANAVLLGLLTQ 425 Query: 398 --------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 K A+E+ V RL LL+ K F AD IR++L +G L DYK+P+ Sbjct: 426 SQDQWFSGKAADAAIDEAAVEERVAARLSLLRAKNFPEADRIREELSGRGIQLMDYKDPE 485 Query: 450 NGQRMTRWKQK 460 G+R T+W+ K Sbjct: 486 TGERRTKWEVK 496 >gi|209885639|ref|YP_002289496.1| cysteinyl-tRNA synthetase [Oligotropha carboxidovorans OM5] gi|226710846|sp|B6JHT8|SYC_OLICO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|209873835|gb|ACI93631.1| cysteinyl-tRNA synthetase [Oligotropha carboxidovorans OM5] Length = 464 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 233/474 (49%), Positives = 302/474 (63%), Gaps = 31/474 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+Y+TL + F +DP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MDLKLYDTLTKDKRAFVPLDPRNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITD+DDKI +RA +++P +P+N+AI +T K QF D L CL PT + Sbjct: 61 DSHVTYVRNITDVDDKINDRALRDYPGLPLNEAIRKVTEKTATQFRADVDALGCLQPTVE 120 Query: 123 PRATNHI-------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKM 175 PRAT+ + M+ LI+ +I GHAYEAN E++FDT+S+P+YG S RK++EQ+ Sbjct: 121 PRATDFVLPRPDGKTDMVSLIKTLIDRGHAYEANGEVLFDTASMPDYGQLSGRKLEEQQA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 G R+ HKK+ ADF+LWK+S+ EPGW+SPWGRGRPGWHIECSAMS+ YLG+ FDIHG Sbjct: 181 GARIAVDAHKKHAADFVLWKQSSADEPGWDSPWGRGRPGWHIECSAMSAAYLGETFDIHG 240 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GGLDLIFPHHENEIAQS CA AN W+HNGFL +EG KMSKS GNF+TINELL Sbjct: 241 GGLDLIFPHHENEIAQSRCAHGTHAMANYWLHNGFLQVEGEKMSKSLGNFVTINELL--- 297 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--VLS 353 + WP V+RL ML THYR PID+T++ L E+ L W T+ PA V+ Sbjct: 298 ----QDWPGEVVRLNMLKTHYRSPIDWTLKGLEESAKALDDWYATAGDAAGSAPADTVME 353 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDL-LPIFNASAHILGI--------EVCKEHLNKN 404 L +DLNT + ALH L ++ K AS LG + K + Sbjct: 354 TLCDDLNTAQTVAALHGLRHQAEKGDAAQRDQLAASLRFLGFFSETKDAWDARKREASGV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + L+ +R K + +D IR +L + G ++D K T W+ Sbjct: 414 DAAQVTALIADRTAARARKDWKESDRIRDELAAMGVAIKDSK------EGTTWE 461 >gi|329729466|gb|EGG65869.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU144] Length = 466 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 168/481 (34%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIATDLEEQSEYIQQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 + + +D NT +A+ A + LA+ + K + +L F + +LG Sbjct: 346 DKILNQFEAVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IE+L++ER K K F+ AD IR L+++ ILED +R Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|311029027|ref|ZP_07707117.1| cysteinyl-tRNA synthetase [Bacillus sp. m3-13] Length = 466 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 165/489 (33%), Positives = 253/489 (51%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL R+ +F ++ ++MYVCGPTVY++ HIGNARP IVFD + R L Y Sbjct: 1 MTIHLYNTLTRQKEKFVPLEEGKVKMYVCGPTVYNYIHIGNARPPIVFDTVRRYLEYRGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I+ A++ + + + I + + +D + L C T Sbjct: 61 E--VNYVSNFTDVDDKLIKAAKE------LGEDVPTIAERFIAAYHEDVSALGCKQATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + +I I+ +I G+AYE++ ++ + T YG S + I++ ++GTR+ Sbjct: 113 PRVTESMDIIIEFIEALIEKGYAYESDGDVYYRTREFKEYGKLSHQPIEDLQLGTRIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF+LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 DKKQDALDFVLWKAAKEGEIHWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLSF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KKH 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 ++R ML HYR PI++ + L L + + Sbjct: 285 DPQLLRFFMLSVHYRHPINYNEELLQSTNNGLERIRTAYANLKHRLDNTVDLATDDTEWV 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAH 390 + + +D NT +AI L +A+++ + F Sbjct: 345 QKVEEFKNEFIKVMDDDFNTANAISVLFDMAKQANLYLNGKNTSEKVLKAFIAQFEELFS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ++G+ + E + I L+Q+R+ K + F+ AD IR +L++K ILED Sbjct: 405 VIGVSLTAEEELLDEEIE--SLIQQRIDARKNRDFARADEIRDELKAKNIILEDT----- 457 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 458 -AQGTRWKR 465 >gi|317472691|ref|ZP_07932006.1| cysteinyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] gi|316899868|gb|EFV21867.1| cysteinyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] Length = 466 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 191/489 (39%), Positives = 255/489 (52%), Gaps = 58/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF + P + MYVCGPTVY++ HIGNARPMI+FD + R Y + Sbjct: 1 MKIYNTLTRKKEEFVPVHPGKVGMYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + + I + ++ KD L THQP+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVSATEIAERYIEECKKDMEGLNVKPATHQPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I GHAYE N + F T S YG S++ ID+ + G R V Sbjct: 113 ATEEIDGMIRMIGTLIEKGHAYEVNGTVYFKTRSFDGYGKLSKKNIDDLEAGHRDIKVRG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK E W SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKQDPLDFVLWKPKKEGEIAWPSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + E AN W+HNGFLN++ +KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEACN-DECFANYWMHNGFLNIDNQKMSKSAGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 +P VIR ML HYR P++F+ + A+ L + T+ G + A Sbjct: 285 YPLQVIRFFMLSAHYRNPLNFSDTLVESAKNGLDRILTAIDLVRDQADKPETAAGKEEEA 344 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASAH 390 A+ +D NT A+ A+ +L + + LL Sbjct: 345 NLEEARKLVGKFEEAMEDDFNTADAVSAIFELVKLANTTVKESSSDYAAKLLETMETLCG 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGIE +E + I ++ K K F+ AD IR +L KG IL+D + Sbjct: 405 VLGIETKQEEDILDEEIERMIEERQ--QARKEKDFARADEIRDELLEKGIILKDTR---- 458 Query: 451 GQRMTRWKQ 459 +WK+ Sbjct: 459 --EGVKWKR 465 >gi|223042919|ref|ZP_03612967.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14] gi|222443773|gb|EEE49870.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14] Length = 466 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 170/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 NH+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMNHMQEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W+SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWDSPFGKGRPGWHIECSVMAYHELGATIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREAIATDLEEHSEYIDQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 + + +D NT +A+ A + LA+ + K H ++ + +LG Sbjct: 346 ETILRQFEAVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLHRFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ N+ + IEKL++ER K K F+ AD IR L+ + ILED +R Sbjct: 406 VPLKGKNENELLDEDIEKLIEERNEARKNKDFARADEIRDMLKERNIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|126660010|ref|ZP_01731132.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] gi|126618688|gb|EAZ89435.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] Length = 482 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 174/502 (34%), Positives = 251/502 (50%), Gaps = 66/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL RK F I+ ++MY CG TVYD+ H+G+AR I++DV+ R L+++ Sbjct: 1 MTLTVYNTLTRKKEPFTTIEEGKVKMYCCGITVYDYCHLGHARTCIIWDVVRRYLQWHGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY++N TDIDDKI+ RAR+E + ++ + + + +D RL Sbjct: 61 N--VTYIQNFTDIDDKILNRARKEKT------TMEAVSERFIEAYFEDMERLGVQKADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + L+ + G+AY +N ++ ++ YG S RK+++ + G Sbjct: 113 PRATHTLNGIQRLVSELEAKGYAYASNGDVYYNVHQFKPYGKLSGRKLEDLQAGASGRVN 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E KK+PADF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH G Sbjct: 173 LEDSEASKKKDPADFAVWKSAKPGEPAWDSPWGKGRPGWHIECSAMVRERLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELLE Sbjct: 233 GSDLIFPHHENEIAQSEAATG-QPLARYWLHNGMVKVGGEKMSKSLGNFTTIRELLE--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 +RL +L HYR+P+DFT + L A + Sbjct: 289 ----KIDPMAVRLFILQAHYRKPVDFTDEALAAATNGWQTLSEGLLFGFQHGTTLGFKGD 344 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP---------------- 383 +A+ +D N + L ++A+E K +LL Sbjct: 345 MLELLPKFVKRFNNAVDDDFNFAGGLAVLFEIAKELRKEGNLLVHQGNTETNSEILEKQW 404 Query: 384 -IFNASAHILGIEVCKEHLNKNISI-----AIEKLVQERLILLKMKKFSSADYIRKQLES 437 A +LG+E + L S AIE L+++R K K F+ +D IR +L+ Sbjct: 405 YTLRTLASVLGLEADRNQLQSEPSDGLNDTAIETLIEQRKEARKNKNFAESDRIRDELKE 464 Query: 438 KGFILEDYKNPDNGQRMTRWKQ 459 +G IL D +T W + Sbjct: 465 QGIILVDQPGG-----LTSWHR 481 >gi|251809946|ref|ZP_04824419.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|282875020|ref|ZP_06283895.1| cysteine--tRNA ligase [Staphylococcus epidermidis SK135] gi|251806489|gb|EES59146.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|281296348|gb|EFA88867.1| cysteine--tRNA ligase [Staphylococcus epidermidis SK135] gi|329734647|gb|EGG70954.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU028] Length = 466 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQHI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 + + +D NT +A+ A + LA+ + K + +L F + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 I + + ++ + IE+L++ER K K F+ AD IR L+++ ILED +R Sbjct: 406 IPLKSKETDELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|27467210|ref|NP_763847.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57866107|ref|YP_187766.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|242241861|ref|ZP_04796306.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis W23144] gi|30316150|sp|Q8CTU1|SYC_STAES RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216111|sp|Q5HRM3|SYC_STAEQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|27314752|gb|AAO03889.1|AE016744_292 cysteinyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57636765|gb|AAW53553.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|242234639|gb|EES36951.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis W23144] Length = 466 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 168/481 (34%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 + + +D NT +A+ A + LA+ + K + +L F + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IE+L++ER K K F+ AD IR L+++ ILED +R Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|262276150|ref|ZP_06053959.1| cysteinyl-tRNA synthetase [Grimontia hollisae CIP 101886] gi|262219958|gb|EEY71274.1| cysteinyl-tRNA synthetase [Grimontia hollisae CIP 101886] Length = 461 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 176/482 (36%), Positives = 256/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L ++ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTKQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCEALTERLIGEMYADFDALNMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I ++I L++ +I G AY A N +++F+ + YG SR+ +++ + G RV + Sbjct: 114 ATQYIAEIIALVERLIDRGFAYVASNGDVLFEVAKFDEYGKLSRQDLEQLQAGARVDVEE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKKSPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSAILGNHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHDT-QYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A + + + +A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARASMERLYTSLRGLDTSVAAEGGEAFVERFKAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + L A +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREINRLKAEDVAAASKLAARMRELAEVLGLLEQDPEAFLKGN 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IE L++ R K +++AD R L + G +LED G + T W+ Sbjct: 406 TEGGDDEVAEIEALIKARNDARANKDWAAADAARDALTAMGIVLED------GAQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|207722904|ref|YP_002253338.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum MolK2] gi|206588088|emb|CAQ18668.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum MolK2] Length = 465 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 257/484 (53%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASAY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGALTDRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQANGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQAEGANG-STFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + + V+R +L +HYR ++++ L +A L++ A Sbjct: 287 -KVYDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEH----- 400 A+ +D NT A+ L +LA E K L+ A ++G+ H Sbjct: 346 GQRFREAMNDDFNTPVAMAVLFELASEVNKTRSPALVNQLAALGGVMGLLGRDPHAFLQG 405 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++ +E ++ R + + F+ AD IR L + G +LED +T Sbjct: 406 GVGAAADGLDTVEVEARIEARRVAKAARDFARADGIRADLLAAGIVLEDKPGG-----VT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|167745717|ref|ZP_02417844.1| hypothetical protein ANACAC_00410 [Anaerostipes caccae DSM 14662] gi|167655029|gb|EDR99158.1| hypothetical protein ANACAC_00410 [Anaerostipes caccae DSM 14662] Length = 466 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 191/489 (39%), Positives = 256/489 (52%), Gaps = 58/489 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK EF + P + +YVCGPTVY++ HIGNARPMI+FD + R Y + Sbjct: 1 MKIYNTLTRKKEEFVPVHPGKVGIYVCGPTVYNYIHIGNARPMIIFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + + I + ++ KD L THQP+ Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVSATEIAERYIEECKKDMEGLNVKPATHQPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI +I +I GHAYE N + F T S YG S++ ID+ + G R V Sbjct: 113 ATEEIDGMIRMIGTLIEKGHAYEVNGTVYFKTRSFDGYGKLSKKNIDDLEAGHRDIKVRG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF+LWK E W SPWG GRPGWHIECS MS Y+G DIH GG DLI Sbjct: 173 EEGKQDPLDFVLWKPKKEGEIAWPSPWGEGRPGWHIECSEMSKKYIGDTIDIHAGGEDLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + E AN W+HNGFLN++ +KMSKS GNF T+ E+ E Sbjct: 233 FPHHENEIAQSEACN-DECFANYWMHNGFLNIDNQKMSKSAGNFFTVREISE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 +P VIR ML HYR P++F+ + A+ L + T+ G + A Sbjct: 285 YPLQVIRFFMLSAHYRNPLNFSDTLVESAKNGLDRILTAIDLVRDQADKPETAAGKEEEA 344 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASAH 390 A+ +D NT A+ A+ +L + + LL I Sbjct: 345 NLEEARKLVGKFEEAMEDDFNTADAVSAIFELVKLANTTVKESSSDYAAKLLEIMETLCG 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGIE +E + I ++ K K F+ AD IR +L KG IL+D + Sbjct: 405 VLGIETKQEEDILDEEIERMIEERQ--QARKEKDFARADEIRDELLEKGIILKDTR---- 458 Query: 451 GQRMTRWKQ 459 +WK+ Sbjct: 459 --EGVKWKR 465 >gi|119485660|ref|ZP_01619935.1| Cysteinyl-tRNA synthetase, class Ia [Lyngbya sp. PCC 8106] gi|119456985|gb|EAW38112.1| Cysteinyl-tRNA synthetase, class Ia [Lyngbya sp. PCC 8106] Length = 481 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 184/500 (36%), Positives = 253/500 (50%), Gaps = 66/500 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R F ++P +++MY CG TVYD+ H+G+AR I +DV+ R L + Sbjct: 3 LKIYNTQTRTKETFIPLEPQHVKMYCCGVTVYDYCHLGHARSYIFWDVVRRYLEWLGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI+ RA++E N ++ ++ + + + +D RL PR Sbjct: 61 TVQYVQNFTDIDDKILNRAKKE------NSSMEAVSERFIEAYYEDLRRLNIRDADAYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE--- 181 AT++I ++ LIQ + G+AY + ++ + P YG S RK D+ + G Sbjct: 115 ATDNISEIYQLIQQLEKKGYAYASKGDVFYSVEKFPEYGKLSGRKQDQLQAGASGRVSGA 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + KK+ +DF LWK S P EP W+SPWG GRPGWHIECSAM LG DIHGGG DLI Sbjct: 175 EGEKKHSSDFALWKASKPGEPAWKSPWGEGRPGWHIECSAMVRQLLGATIDIHGGGGDLI 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A+ E A W+HNGF+ + G KMSKS GNF TI +LLET Sbjct: 235 FPHHENEIAQSEAANC-EPLARFWMHNGFVTVGGEKMSKSLGNFTTIRQLLETV------ 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------PQTSTSKGIID------ 348 VIRL + HYR+P+DFT +T AE + Q G +D Sbjct: 288 -DPMVIRLFVFQAHYRKPLDFTPDAITSAENGWNTLCEGLLFKSQHGEKLGWLDKNDLPP 346 Query: 349 -------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------------I 384 A+ +D NT + L +LA+E ++L Sbjct: 347 ALHSEAVERFQIAMDDDFNTPGGLAVLFELAKELRTEGNILTHEGKTETPLPQIQQTWWT 406 Query: 385 FNASAHILGIEVCKEH-----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A +LG+EV E + IE L+Q+RL K K ++ D IR +L+ G Sbjct: 407 LVQLAEVLGLEVKPEDTSIPTASGLSDQEIEDLIQQRLAARKAKNYAEGDQIRDRLKEAG 466 Query: 440 FILEDYKNPDNGQRMTRWKQ 459 L D + T W + Sbjct: 467 ITLIDRPGGE-----TVWHR 481 >gi|238916434|ref|YP_002929951.1| cysteinyl-tRNA synthetase [Eubacterium eligens ATCC 27750] gi|259511832|sp|C4Z3N5|SYC_EUBE2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|238871794|gb|ACR71504.1| cysteinyl-tRNA synthetase [Eubacterium eligens ATCC 27750] Length = 472 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 179/495 (36%), Positives = 253/495 (51%), Gaps = 64/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R+ EF+ ++ ++MYVCGPTVY+ HIGNARPMIVFD + R L Y + Sbjct: 1 MRIYNTLSRRKEEFKPLEEGKVKMYVCGPTVYNLIHIGNARPMIVFDTVRRYLEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E + I+++ + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKANEE------GVSAEEISTRYIAECKKDMEGMNIKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---- 180 AT I MI +IQ +I G+AYE N + + T YG S++ ID+ + G R Sbjct: 113 ATQEIGGMIDMIQTLIDKGYAYEVNGTVYYRTRKFAEYGKLSKKNIDDLEAGHRDEAHSL 172 Query: 181 ---EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF+LWK EP W SPW GRPGWHIECS MS YL DIH GG Sbjct: 173 KVTGEDEKEDPLDFVLWKPKKEGEPSWPSPWSDGRPGWHIECSVMSKKYLADEIDIHAGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENEIAQS A+ + + W+HN FLN++ +KMSKS GNF T+ ++ Sbjct: 233 EDLIFPHHENEIAQSEAANGV-PFSKYWMHNAFLNIDNKKMSKSLGNFFTVRDI------ 285 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------- 337 R + V+R ML HYR P++F+ + A+ L + Sbjct: 286 -SREYDLEVLRFFMLSAHYRNPVNFSHDLMESAKNGLDRILTAVDNLRHLSENAKDVIMT 344 Query: 338 ---PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPI 384 + S I ++ +D NT AI A+ +L + + N L+ Sbjct: 345 EDEKKIIASIDDIYKKFEDSMDDDFNTADAISAIFELVKLANSNSSSDNSKEYIDTLMKK 404 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 ILG++ K+ + + IE L+ ER K K F+ AD IR +L +KG +L+D Sbjct: 405 ITTLTDILGLKTDKKE--EMLDEDIEALIAERQQARKDKNFARADEIRDELLAKGIVLKD 462 Query: 445 YKNPDNGQRMTRWKQ 459 + RW + Sbjct: 463 TR------EGVRWSR 471 >gi|257888689|ref|ZP_05668342.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,141,733] gi|257824743|gb|EEV51675.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,141,733] Length = 470 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 175/494 (35%), Positives = 257/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANE------LGITAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 ++ V+R M T YR PI ++ + EA L + T Sbjct: 286 QNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 T ++ + + +D N + I +++LA+ D +F+ Sbjct: 346 DKITLLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQAEVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|85858183|ref|YP_460385.1| cysteinyl-tRNA synthetase [Syntrophus aciditrophicus SB] gi|85721274|gb|ABC76217.1| cysteinyl-tRNA synthetase [Syntrophus aciditrophicus SB] Length = 550 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 194/515 (37%), Positives = 247/515 (47%), Gaps = 80/515 (15%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +K+YNTL K F I + +YVCG TVYD H+G+AR +VFDVL R L Y Sbjct: 56 PMSLKLYNTLNNKKEVFTPIREGRVGLYVCGITVYDVCHVGHARSAVVFDVLKRYLEYRG 115 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E VTY++N TD+DDKII RA E +IS I ++ KD RL L PT Sbjct: 116 YE--VTYIKNFTDVDDKIIARANAE------GVSISEIANRYIASHDKDMDRLGVLRPTV 167 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT HI +MI LI + G AY + + + P YG S RK+++ G R+ Sbjct: 168 TPRATEHIGEMIELISKLQKRGLAYAVDGNVYYAVERFPGYGKLSGRKLEDMMAGARIDV 227 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 HK NP DF LWK S P EP W+SPWG GRPGWHIECS MS YLG FDIHGGG DL+ Sbjct: 228 NEHKNNPMDFALWKASKPNEPAWDSPWGPGRPGWHIECSVMSQKYLGDTFDIHGGGEDLV 287 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS + ANIWIHNGF+ + KMSKS GN TI E+L Sbjct: 288 FPHHENEIAQSEGVTG-KPLANIWIHNGFVKINSEKMSKSLGNVFTIQEMLTR------- 339 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------------- 347 + A VIRL ML +HYR +DF+ + L+EA + ++ T + + Sbjct: 340 YHAEVIRLFMLQSHYRSAVDFSEESLSEARQGMDRFYGTLKAIQEVLAVAEEEASPISPE 399 Query: 348 ----------------DPAVLSALYNDLNTVSAIQALHKLAREST--------------- 376 + A+ +DLNT AI L AR+ Sbjct: 400 TLTGKTAELYAHVQGLPDRFVEAMDDDLNTARAIGYLFDAARQINGFIRDAKMAKSKEGW 459 Query: 377 KNHDLL-PIFNASAHILGIEVCKEHL------------NKNISIAIEKLVQERLILLKMK 423 K L ++LG+ + IE L+ +R K Sbjct: 460 KVLALAGKSIKDLGYVLGLFQENPDVYFLQDREREIRKRGLEPAEIELLIADRWAARNDK 519 Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + AD IR+ L KG +L+D T WK Sbjct: 520 DWHKADEIRQLLTEKGIVLKDTPT------GTTWK 548 >gi|82543006|ref|YP_406953.1| cysteinyl-tRNA synthetase [Shigella boydii Sb227] gi|109894937|sp|Q324Y3|SYC_SHIBS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81244417|gb|ABB65125.1| cysteine tRNA synthetase [Shigella boydii Sb227] Length = 439 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 167/448 (37%), Positives = 241/448 (53%), Gaps = 42/448 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+ +++FD + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L + L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCK-------- 398 + +D NT A L +ARE K D+ + +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFS 426 + + IE L+Q+RL K K ++ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWA 433 >gi|302879529|ref|YP_003848093.1| cysteinyl-tRNA synthetase [Gallionella capsiferriformans ES-2] gi|302582318|gb|ADL56329.1| cysteinyl-tRNA synthetase [Gallionella capsiferriformans ES-2] Length = 456 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 178/471 (37%), Positives = 251/471 (53%), Gaps = 37/471 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R EF I+P+ +RMYVCG TVYD+ H+G+AR M+VFD++YR + + Sbjct: 2 LKIYNTLARDKQEFVPIEPNVVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWFKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + N++I +T + D L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAAEN------NESIHSLTQRFIDAMHVDADALGVTRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ +I + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 114 ATQYVPEMLEMIAKLEANGLAYQAADGDVNYAVRKFEGYGKLSGKSLEDLRAGERVEVTD 173 Query: 184 HKKNPADFILWKRSTP---MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK + E W+S WGRGRPGWHIECSAM S LG+ FDIHGGG DL Sbjct: 174 AKNDPLDFVLWKHARDDEAEEVKWDSKWGRGRPGWHIECSAMGSKLLGEHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+L + Sbjct: 234 QFPHHENEIAQSEGAHQCS-YVNYWMHNGFVRVDNEKMSKSLGNFFTIREVL-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-----------KGIIDP 349 + V+R +L HYR P++++ L +A+ L + S Sbjct: 286 QYDPEVVRFFILRAHYRSPLNYSDAHLDDAKKALDRLYTALKSGSASGVRAVDWTEAYAV 345 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGIEVCKE----HLNK 403 +A+ +D NT AI L LA + + + D A +LG+ Sbjct: 346 RFKAAMDDDFNTAEAIAVLFDLANDVNRSQSEDAAAQLKALGAVLGLLERDPTEFLQGAG 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 + I + R K ++ AD IRK L + G +LED N +R+ Sbjct: 406 SDDAQIVGQIAARNAAKLAKNYAEADRIRKALLADGIVLEDSAAGTNWRRV 456 >gi|298290922|ref|YP_003692861.1| cysteinyl-tRNA synthetase [Starkeya novella DSM 506] gi|296927433|gb|ADH88242.1| cysteinyl-tRNA synthetase [Starkeya novella DSM 506] Length = 464 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 218/471 (46%), Positives = 286/471 (60%), Gaps = 30/471 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++K+YNTL R F ++PS +RMYVCGPTVYDFAHIGNARP+IVFD+LYRLLR+ YG Sbjct: 10 PELKLYNTLTRAKETFVPLEPSQVRMYVCGPTVYDFAHIGNARPVIVFDLLYRLLRHLYG 69 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRNITD+DDKI RA E P + +N+AI+ +T QF D L L P + Sbjct: 70 AEHVKYVRNITDVDDKINARAASEFPGLDLNEAIAKVTFTTEAQFHDDLEALGVLHPDVE 129 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI +M LI+ ++ GHAY A + ++F S+P+YG S R +++ G RV Sbjct: 130 PRATEHIAEMRVLIERLVASGHAYVAEDHVLFSVPSMPDYGQLSHRPLEDMIAGARVDVA 189 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++ DF+LWK S P EPGW SP G GRPGWHIECSAMS +LG+ FDIHGGG+D Sbjct: 190 PYKQDAMDFVLWKPSKPGEPGWLSPAGIAVPGRPGWHIECSAMSWKHLGETFDIHGGGID 249 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENE+AQS CA A +W+HNGFL +EG KMSKS GNF+TI +LL Sbjct: 250 LVFPHHENEVAQSRCAFHANIMAKVWMHNGFLQVEGEKMSKSLGNFVTIRDLLAD----- 304 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--VLSALYN 357 WP V+RL ML THYR+PID+TV+ L E+ L +W + PA VL AL + Sbjct: 305 --WPGEVLRLNMLKTHYRQPIDWTVKGLEESAKTLEQWFDAAAPDAYPRPAAAVLEALAD 362 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV--CKEHLNKNI------SIAI 409 DLNT AI +H L K+H + LG E +E I Sbjct: 363 DLNTPKAIAEMHAL-----KDHAGKKALAGTLAFLGFEPGPFREWAAAQAPELTIPEAEI 417 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 E + ER+ + + ++++D IR +L + G L+D K+ T W+ K Sbjct: 418 EARIAERIEARRNRDWAASDRIRDELMALGVALKDNKDGT-----TTWEPK 463 >gi|88941991|sp|Q65UY1|SYC_MANSM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 458 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 259/478 (54%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I+P+ + MYVCG TVYD H G+ R + FDV+ R LRY + Sbjct: 2 LKIFNTLTREKEEFKPINPNKVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYLRYLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITD+DDKII+RA + N+ + + + KD L L P +PR Sbjct: 61 -LRYVRNITDVDDKIIKRA------LENNETCDQLVERMIAEMHKDFDALNILRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HIP++I +++ +I GHAY A + +++FD S YG+ SR+ +++ + G RV K Sbjct: 114 ATKHIPEIIAMVETLIRRGHAYVAEDGDVMFDVESFQKYGALSRQNLEQLQAGARVEIKS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S P EP W+SPWG+GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNDKELGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA E N W+H G L + KMSKS NF TI ++L + Sbjct: 234 HHENEIAQSCCAHDGE-YVNYWLHTGMLTINEEKMSKSLNNFFTIRDILT-------KYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLSAL 355 A +R L YR +D++ + + A L + ++ +A+ Sbjct: 286 AESVRYFFLTAQYRSLLDYSEENIGLARKALERLYTALRGCETVEIPAEDQYVIDFKTAM 345 Query: 356 YNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIE------VCKEHL 401 +D NT A+ L +LARE K + L A +LG+ + Sbjct: 346 DDDFNTPGALAVLFELAREINKLKTEDQTKANQLASRLKQLAGVLGLLEQAPETFLQGDA 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L++ R K +++AD R +L + G +LED G + T W++ Sbjct: 406 ADAEVSKIEALIKRRNEARAAKDWAAADAARNELTAMGVVLED------GAKGTTWRK 457 >gi|308273875|emb|CBX30475.1| Cysteinyl-tRNA synthetase [uncultured Desulfobacterium sp.] Length = 478 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 183/491 (37%), Positives = 246/491 (50%), Gaps = 57/491 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNT+ERK F+ + P + MYVCGPTVYD HIG+AR +IVFDV+ + L Sbjct: 1 MSLRIYNTIERKKVPFEPVQPGKVSMYVCGPTVYDSCHIGHARSVIVFDVILKYLNATGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRN TD+DDKII RA + + + + ++F +D L T + Sbjct: 61 E--VTYVRNFTDVDDKIINRA------VQLGIESHEVAERYIKEFYEDMDALNIKRATIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI ++I LI+ ++ AY + +I + +YG S RK+++ + G RV Sbjct: 113 PKATEHIDKIIALIEILLKKEIAYRIDGDIYYSVDKFKDYGKLSGRKLEDMEAGARVEID 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K NP DF LWK P EP WESPWGRGRPGWHIECSAMSS YLG+ FDIHGGG DLIF Sbjct: 173 ERKNNPFDFALWKSQKPGEPYWESPWGRGRPGWHIECSAMSSAYLGETFDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNGF+N+ KMSKS GNF+ I ++L +S+ Sbjct: 233 PHHENEIAQSEGAF-EKPFAKYWVHNGFVNINHEKMSKSLGNFLLIKDIL-------KSY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 +RL +L HYR PIDFT + + E+E L K I Sbjct: 285 HPDSVRLFLLSNHYRSPIDFTDKAMEESEAALDKIYSAIQRVEEIADITGKDFINYPEGY 344 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKNHD--------------LLPIFNASAHILG 393 ++ +D NT I L R + D + ++G Sbjct: 345 WEKFCESMDDDFNTAKGIGYLFDSVRHINRLLDENSNSDEIKTIINSIYADIRKMGDVIG 404 Query: 394 IEVCKEHL------------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 I + I+ LV++R K K + AD IR +L I Sbjct: 405 ILSEPAEIYFNKKKTKFIETKDVDPSLIDALVKQRFEARKAKDWKKADRIRDKLSGIDVI 464 Query: 442 LEDYKNPDNGQ 452 +ED + Sbjct: 465 IEDKPEGSIWK 475 >gi|227552721|ref|ZP_03982770.1| cysteine--tRNA ligase [Enterococcus faecium TX1330] gi|257897353|ref|ZP_05677006.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com12] gi|227178121|gb|EEI59093.1| cysteine--tRNA ligase [Enterococcus faecium TX1330] gi|257833918|gb|EEV60339.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com12] Length = 470 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 176/494 (35%), Positives = 258/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + A + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANE------LGIAAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 ++ V+R M T YR PI ++ + EA L + T Sbjct: 286 QNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 T ++ + + +D N + I +++LA+ D +F+ Sbjct: 346 DKITLLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQAEVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|291563603|emb|CBL42419.1| cysteinyl-tRNA synthetase [butyrate-producing bacterium SS3/4] Length = 469 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 249/492 (50%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ EF ++P ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIYNTLTKRKEEFVPVEPGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E I+ + + KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVDAETISKRYIAECKKDMEGMNIEPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +I +I G+AY A + + + +YG S + +D+ + G R V Sbjct: 113 ATEEICGMLNMISTLIEKGYAYVAADGTVYYSVRKFKDYGKLSHKNLDDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS M+ YLG DIH GG DL Sbjct: 173 GEEGKQDPNDFVLWKPKKEGEPYWESPWCEGRPGWHIECSVMAKRYLGDEIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ + A W+HN FLN++ +KMSKS GNF T+ E+ E Sbjct: 233 IFPHHENEIAQSEAANG-KPFAKYWMHNAFLNIDNKKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAV 351 + V+R ML HYR P++F+ + ++ L + + + G + Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERILTGMEKLREAEAKAADGTMTEEE 344 Query: 352 LS--------------ALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 L A+ +D NT AI A+ +L + S + Sbjct: 345 LENKKKAMELVAKYEAAMDDDFNTADAISAIFELIKLSNSTVSGASTKEYVSWMKNEIQR 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ++GI E + + +E L+ +R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVMGI--ITEKKAEVLDSEVEDLIAQRQAARKAKNFALADEIRGKLLDMGIVLEDTR- 461 Query: 448 PDNGQRMTRWKQ 459 +WK+ Sbjct: 462 -----EGVKWKR 468 >gi|291279235|ref|YP_003496070.1| cysteinyl-tRNA synthetase [Deferribacter desulfuricans SSM1] gi|290753937|dbj|BAI80314.1| cysteinyl-tRNA synthetase [Deferribacter desulfuricans SSM1] Length = 481 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 187/484 (38%), Positives = 256/484 (52%), Gaps = 55/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL K EF + + +RMYVCG TVYD+ HIG+AR +VFD++ R L Y E Sbjct: 2 LIIFNTLTGKKEEFIPLQDNKVRMYVCGVTVYDYCHIGHARSSVVFDIIRRYL--IYKEY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII+R+ +E N +T K ++ D +L + P P+ Sbjct: 60 DVTFVKNFTDIDDKIIKRSNEE------NIHWKELTEKFIKEHDYDMEKLNIMPPDFTPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT I +MI L + +I G+AY + ++ + +YG S+R +DE G RV Sbjct: 114 ATEFIDEMIKLCEKLIEKGYAYVVDGDVYYRVEKFKDYGKLSKRNLDELLAGARVEVDER 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK+S EP WESPWG+GRPGWHIECS MS+ LG FDIHGGG DLIFPH Sbjct: 174 KENPLDFALWKKSKENEPYWESPWGKGRPGWHIECSVMSAKLLGIPFDIHGGGKDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A+ + A WIHNGF+N+ KMSKS GNF TI E++ + + Sbjct: 234 HENEIAQSEAAE-EKMFAKYWIHNGFVNINKEKMSKSLGNFFTIREII-------KEFDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTSK 344 V+R +L THYR PIDF+ L EAE L++ + + Sbjct: 286 EVLRFFLLTTHYRSPIDFSFDHLVEAEQSLNRIYTFLDDLEHYVVSKKGKNYLEEANKIF 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------------LLPIFNAS-AH 390 +++ +D N+ A+ A+ +E + + L F Sbjct: 346 ENFKKEFETSMDDDFNSAKALAAIFDYIKEINRLLNQKVVKETYEEILKLTNNFKKIVNQ 405 Query: 391 ILGI--EVCKEHLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGI + KE N+ I+ +L ++ER K K F AD IR +LES G L D Sbjct: 406 VLGIINKTPKEWFASNLPISESELIKKIEERTNARKNKNFELADKIRDELESLGIELLDT 465 Query: 446 KNPD 449 Sbjct: 466 PTGT 469 >gi|206890680|ref|YP_002249765.1| cysteinyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] gi|226735066|sp|B5YID4|SYC_THEYD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|206742618|gb|ACI21675.1| cysteinyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 487 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 194/507 (38%), Positives = 258/507 (50%), Gaps = 73/507 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL K+ EF+ I+ + +Y CG TVYD HIG+AR +VFDV+ + LRY E Sbjct: 1 MRVFNTLTDKLEEFKPINDKKVGIYACGVTVYDLCHIGHARSAVVFDVIVKYLRYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDKII RA +E + I K T ++ KD RL +P+ Sbjct: 60 -VKFVKNFTDIDDKIINRANKE------GVSWKEIAEKYTGEYYKDMDRLGITRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 AT HI +MI +IQ +I G+AYE + F P YG S++KIDE G RV Sbjct: 113 ATEHINEMIEIIQTLINKGYAYEIEEGQAKSVYFSVEKFPQYGKLSKKKIDELISGARVE 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DL Sbjct: 173 VDERKKSPLDFALWKASKPGEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGGADL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS + A WIHNGF+ + KMSKS GN + I +LL+ Sbjct: 233 IFPHHENEIAQSEAFTG-KPFAKYWIHNGFVTINKEKMSKSLGNVLNIRDLLDI------ 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 + A +RL +L +HYR PI+F + + EAE + + T + Sbjct: 286 -YDAEALRLFLLSSHYRSPIEFAHEYIKEAEATVDRVYSTIMRIEDFEKIEINDKSSIEF 344 Query: 349 -----------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------- 383 P A+ +D NT A+ L + +E + D P Sbjct: 345 DKVKAMLENLKPEFEKAMDDDFNTAKALGILFEFIKEINRFMDKKPSQNKEIDFLVTAKR 404 Query: 384 IFNASAHILGI----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +L + ++ K I +L++ER K K + AD IR+ Sbjct: 405 AIKEIGSVLNLFQRQPVDWYRDLLKVKKIAIKEEEINRLIKERTEARKNKDWKKADSIRE 464 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 QL SKG ILED + T WK K Sbjct: 465 QLLSKGIILEDKPD------RTIWKVK 485 >gi|90411646|ref|ZP_01219656.1| cysteinyl-tRNA synthetase [Photobacterium profundum 3TCK] gi|90327536|gb|EAS43889.1| cysteinyl-tRNA synthetase [Photobacterium profundum 3TCK] Length = 464 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 180/485 (37%), Positives = 259/485 (53%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L ++ EF+ I P + MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTKQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + KD L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCDSLTERLIGEMHKDFDALGMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I + + +I G AY A N +++F+ S YG SR+ +D+ + G RV Sbjct: 114 ATEFIAEIITMCERLIERGFAYVASNGDVMFEVSKFEEYGRLSRQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCATG-SQYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLG-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ + L +A L + + + A ++ Sbjct: 286 AESVRYFLMSGHYRSQLNYSEENLKQARSALERLYTSLRGLDLTAQAEGGEEFVTRFTAS 345 Query: 355 LYNDLNTVSAIQALHKLARESTK-------------NHDLLPIFNASAHILGIE------ 395 + +D NT A L + RE + L A ILG+ Sbjct: 346 MNDDFNTPEAYSVLFDMVREINRLKADETIADNIAQASALGARLRELADILGLLSQDPEA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++ IE L+Q+RL K +++AD R +L + ILED G + T Sbjct: 406 FLQGGAGQDDVAEIESLIQQRLDARAAKDWAAADAARDKLLAMKIILED------GPQGT 459 Query: 456 RWKQK 460 W++K Sbjct: 460 TWRRK 464 >gi|88811742|ref|ZP_01126996.1| cysteinyl-tRNA synthetase [Nitrococcus mobilis Nb-231] gi|88791133|gb|EAR22246.1| cysteinyl-tRNA synthetase [Nitrococcus mobilis Nb-231] Length = 469 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 177/486 (36%), Positives = 255/486 (52%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYN+L + F+ I+P +RMYVCG TVYD+ H+G+AR M+VFD + R LR Sbjct: 2 LYIYNSLTNRKEPFRPIEPGRVRMYVCGMTVYDYCHLGHARAMVVFDTVVRYLRSAGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII RA + + + ++++T + DT L CL P +PR Sbjct: 60 RVDYVRNITDVDDKIIRRAAE------LGEPVNVLTERFIAAMHADTAALGCLLPDAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA--NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 AT ++ ++ LIQ ++ G+AY+A I + YG S +++ + G RV Sbjct: 114 ATAYMDAIVALIQRLLDRGYAYQAVDEGSIYYAVERFEGYGRLSGERLEALRAGARVEPG 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ ADF+LWK + P EP W +PWG GRPGWHIECSAM+ LG+ FDIHGGGLDL F Sbjct: 174 AGKRDAADFVLWKAAKPGEPSWPAPWGEGRPGWHIECSAMAGACLGQHFDIHGGGLDLKF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A N W+HNG + + KMSKS GNF T+ E+L+ + Sbjct: 234 PHHENEIAQSEAAWGGR-YVNFWMHNGHIRINDEKMSKSLGNFFTVREVLQV-------Y 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVL 352 A IR +L +HYR P++++ L + L + + A Sbjct: 286 RAEEIRYFLLSSHYRSPLNYSTSDLDNSRAALERLYLALRDLPFTEASPALAAPYREAFR 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNA------SAHILGIEVCK 398 A+ +D NT A+ L LARE + D L A + K Sbjct: 346 QAMDDDFNTPLALAVLFDLAREINRRRDRFESQAAALAATLRELGGLLGLAQVAPEVFLK 405 Query: 399 EHLNKNISIAI-----EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 ++++ I E L+ ER + K + F++AD IR +L+++G LED + Sbjct: 406 GGAGSSVAVGIASERVEALLAERALARKNRDFATADRIRDELQAQGIALEDT------PQ 459 Query: 454 MTRWKQ 459 T W++ Sbjct: 460 GTAWRR 465 >gi|293367905|ref|ZP_06614543.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291317934|gb|EFE58342.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329738050|gb|EGG74271.1| cysteine--tRNA ligase [Staphylococcus epidermidis VCU045] Length = 466 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 168/481 (34%), Positives = 258/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F D L T PR Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYDDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 + + +D NT +A+ A + LA+ + K + +L F + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IE+L++ER K K F+ AD IR L+++ ILED +R Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|304392050|ref|ZP_07373992.1| cysteinyl-tRNA synthetase [Ahrensia sp. R2A130] gi|303296279|gb|EFL90637.1| cysteinyl-tRNA synthetase [Ahrensia sp. R2A130] Length = 500 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 237/499 (47%), Positives = 313/499 (62%), Gaps = 46/499 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++ +YNTL R F IDP+N+RMYVCGPTVYD AHIGNARP+IVFDVL+RLLR+ YG Sbjct: 2 TQLTLYNTLTRSKEPFTPIDPNNVRMYVCGPTVYDHAHIGNARPVIVFDVLFRLLRHIYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKII+RAR++ P + +N AI+ +T T QF D L CL PT + Sbjct: 62 EDAVKYVRNITDVDDKIIDRARRDFPDLDLNAAIAKVTESTTAQFQADMKALGCLEPTVE 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDTSSIPNYGSFSRRKIDEQKMGTR 178 P+AT HI M+ +I +I G+AY A+ E++FD +S +YG S RK+D+Q+ G R Sbjct: 122 PKATEHIGGMVEMISTLIAKGNAYVASGAKGREVLFDVTSDDDYGVLSNRKLDDQQAGAR 181 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWG--------RGRPGWHIECSAMSSHYLGKV 230 V + HK+NP DF+LWK S EPGW+ + GRPGWHIECSAMS +LG+ Sbjct: 182 VAVESHKRNPGDFVLWKESAADEPGWDGGFTSSSGGETIHGRPGWHIECSAMSKAHLGET 241 Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290 FDIHGGGLDLIFPHHENEIAQSCCA+ ++ AN+W+HNG+L +EG+KMSKS+GNFIT+++ Sbjct: 242 FDIHGGGLDLIFPHHENEIAQSCCANSTDRMANVWMHNGYLQVEGKKMSKSDGNFITVHD 301 Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------- 343 LL T+K GGR WP V+RLA+LMTHYREP+DFTV+RL EA+ +L K + S Sbjct: 302 LLHTEKVGGRKWPGEVVRLAILMTHYREPLDFTVRRLEEADDILIKLNRIFDSLMTSTFA 361 Query: 344 --------KGIIDPAVLSA------LYNDLNTVSAIQALHKLARE---------STKNHD 380 + + A +A L DLN L L RE K D Sbjct: 362 KAISRPPERAGTNSAYRTANRTILSLVEDLNF---KAVLDFLIRELRVSYHNLSEEKQSD 418 Query: 381 LLPIFNASAHILGIEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 L +LGI+ + ++ I V+ R + K + AD IR +L ++G Sbjct: 419 WLDALARIFLMLGIKPAPQQTRNDVRDSQIAYAVRSRAEAIASKNWPVADRIRDELLAQG 478 Query: 440 FILEDYKNPDNGQRMTRWK 458 L+D K+P+ G+R T W+ Sbjct: 479 IQLKDGKDPETGERTTTWE 497 >gi|134298071|ref|YP_001111567.1| cysteinyl-tRNA synthetase [Desulfotomaculum reducens MI-1] gi|187629810|sp|A4J0Y9|SYC_DESRM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|134050771|gb|ABO48742.1| cysteinyl-tRNA synthetase [Desulfotomaculum reducens MI-1] Length = 486 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 179/507 (35%), Positives = 245/507 (48%), Gaps = 73/507 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R EF D ++ MYVCGPT Y+F H+GNARP++ FD + R + Y Sbjct: 1 MQIYNTLARAKEEFIPRDKGHVSMYVCGPTTYNFIHLGNARPLVFFDTVRRY--FLYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII RA +E + K Q+F D L + P+ Sbjct: 59 KVDYVQNFTDVDDKIINRAAEEK------IDPLELAQKYIQEFFVDADALNVMRADTHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HI ++I LI+ + GHAY + ++ F S YG S R +++ + G RV Sbjct: 113 VSEHIEEIIDLIKRLEDQGHAYVVDGDVYFAVRSFAEYGKLSGRSLEDMQAGARVEVDPR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + P EP W+SPWG GRPGWHIECSAM+ YLG FDIHGGG DLIFPH Sbjct: 173 KKDPMDFALWKAAKPGEPSWDSPWGSGRPGWHIECSAMAEKYLGNGFDIHGGGFDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A A W+HNGF+ + KMSKS GNF + E+L +P Sbjct: 233 HENEIAQSEAA-CKAPFARYWMHNGFITINQEKMSKSLGNFFLVREILA-------KFPP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------------ 340 V+R +L THYR P+DF ++L + L + Sbjct: 285 DVVRWYLLSTHYRSPLDFDDEKLVMSGKGLERIKTALRLLYEAMDLPVYEGEDIQGAENF 344 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST---------------KNHDLL-PI 384 + I A+ +D NT AI LA+E K D + Sbjct: 345 EETLQRIRLEFEKAMDDDFNTALAISYFFDLAKEVNIYVGKLNSKVTLEMRKILDQAHTL 404 Query: 385 FNASAHILGIEVCKEHLNKNI-----------SIAIEKLVQERLILLKMKKFSSADYIRK 433 +LGI + K + ++ +++ R K +S+AD IR Sbjct: 405 IKDFNRVLGILKEDKMTGKLLIEMAGADDTLTEGLVQLIIKIRQEARSKKDWSTADAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQK 460 L+ G +LED + RWK++ Sbjct: 465 GLKELGVVLEDT------PQGVRWKKQ 485 >gi|293553639|ref|ZP_06674263.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1039] gi|291602214|gb|EFF32442.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1039] Length = 470 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 177/494 (35%), Positives = 259/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGRVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANE------LGITAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L + T + S+ + D A Sbjct: 286 KNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPKVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|257462531|ref|ZP_05626942.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D12] gi|317060185|ref|ZP_07924670.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D12] gi|313685861|gb|EFS22696.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D12] Length = 473 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 187/493 (37%), Positives = 267/493 (54%), Gaps = 61/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + F + MYVCGPTVY++ HIGNARP IVFD + R Y + Sbjct: 2 IKIYNTLSAALDTFVPRKEKEVSMYVCGPTVYNYIHIGNARPAIVFDTVRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V YV+N TD+DDK+I+RA +E + I + + +++D L +P Sbjct: 61 -VKYVQNFTDVDDKMIKRANEE------GSTVEEIAHRYIEAYLEDMKCLHIKEEGMLRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI +IQ++I GHAYEAN ++ F S+ YG+ S++KI++ + G R+ Sbjct: 114 KATEHIQEMIDMIQSLIDKGHAYEANGDVYFRVSTYHEEYGALSKQKIEDLQSGARIEVT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS+ Y G FDIHGGG DLIF Sbjct: 174 ELKESPLDFALWKASKPGEPHWDSPWGKGRPGWHIECSAMSNKYFGNSFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ A W+HNG++N++G KMSKS GNF+ + ++L + + Sbjct: 234 PHHENEIAQSKCSCGGS-FAKYWMHNGYINIDGVKMSKSLGNFVLLRDIL-------KHF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 VIR ML HYR+P++F+ L +A+I L + + I Sbjct: 286 SGKVIRFFMLSAHYRKPMNFSDTELNQAKIALERMENSLIRVHEISEHKIDPQGNSGEEL 345 Query: 348 -------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDL------LPIFNASA----- 389 + + A+ D NT AI L +L RE K D + +A Sbjct: 346 KKVLKDTEEKFIEAMDEDFNTAQAIGVLFELVRELNKTLDSPYNQEGYEVLKKTATYLYH 405 Query: 390 ---HILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGI V E +N+++ +E +++ R K + +D IR +L G ++D Sbjct: 406 ILYDVLGIAVEVETKVENLTVDLVEFILELRREARAAKNWELSDRIRDRLAELGIQIKDG 465 Query: 446 KNPDNGQRMTRWK 458 K+ T W+ Sbjct: 466 KDS------TTWR 472 >gi|257899915|ref|ZP_05679568.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com15] gi|257837827|gb|EEV62901.1| cysteinyl-tRNA synthetase [Enterococcus faecium Com15] Length = 470 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 177/494 (35%), Positives = 260/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANE------LGITAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L + T + S+ + D A Sbjct: 286 QNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPEVSATVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|315659130|ref|ZP_07911995.1| cysteine--tRNA ligase [Staphylococcus lugdunensis M23590] gi|315495854|gb|EFU84184.1| cysteine--tRNA ligase [Staphylococcus lugdunensis M23590] Length = 466 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y + Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I + Q F +D L T PR Sbjct: 61 -VDYVSNFTDVDDKLIKRSQE------LNESVPEIADRYIQAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+N++ G+AYE++ ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMDHMEDIIEFIKNLVDEGYAYESHGDVYFRTRKFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWSSPFGEGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ ++ A+ L + + Sbjct: 286 DVLRFFMISVHYRSPINYNMELVSAAKSGLERIRNSYQLIEERETIATNIVEQTDYIEQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + +D NT +A+ A + LA+ + K + ++ F + +LG Sbjct: 346 DEILKQFEQVMNDDFNTANAVTAWYDLAKLANKYVLEKSTSTAVIERFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IE+++ ER K K F+ AD IR L+++ ILED +R Sbjct: 406 VPLKGQEADVLLDEEIEQMIAERDEARKNKDFARADEIRDTLKAQHIILEDTPQGVRYKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|289551670|ref|YP_003472574.1| Cysteinyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] gi|289181201|gb|ADC88446.1| Cysteinyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] Length = 466 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 169/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y + Sbjct: 2 ITLYNTLTRQKEVFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYQGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ +N+++ I + Q F +D L T PR Sbjct: 61 -VDYVSNFTDVDDKLIKRSQE------LNESVPEIADRYIQAFYEDVGALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+N++ G+AYE++ ++ F T YG S + ID+ K+G R+ Sbjct: 114 VMDHMEDIIEFIKNLVDEGYAYESHGDVYFRTRKFDGYGKLSHQSIDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G GRPGWHIECS M+ H LGK DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWSSPFGEGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------------------TSK 344 V+R M+ HYR PI++ ++ ++ A+ L + + Sbjct: 286 DVLRFFMISVHYRSPINYNMELVSAAKSGLERIRNSYQLIEERETIATNIVEQTDYIEQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 I + +D NT +A+ A + LA+ + K + ++ F + +LG Sbjct: 346 DAILKQFEQVMNDDFNTANAVTAWYDLAKLANKYVLEKSTSTAVIERFKEVYQIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IE+++ ER K K F+ AD IR L+++ ILED +R Sbjct: 406 VPLKGQEADVLLDEEIEQMIAERDEARKNKDFARADEIRDTLKAQHIILEDTPQGVRYKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|329769070|ref|ZP_08260492.1| cysteinyl-tRNA synthetase [Gemella sanguinis M325] gi|328839561|gb|EGF89137.1| cysteinyl-tRNA synthetase [Gemella sanguinis M325] Length = 465 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 182/488 (37%), Positives = 273/488 (55%), Gaps = 56/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + ++MYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVKMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E + + +T+K + F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEE------GISTTELTNKYIEAFFKDYDALGCARATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I +++ G AYE+N ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIIDFIADLVKEGFAYESNGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W+SP+G GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWDSPFGEGRPGWHIECSVMAKETLGETIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHA-PFSNYWMHNAFINIDNVKMSKSLGNFRLVKDIIA-------EIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLSA 354 V+RL ML HYR PI++T++ + A K T++ ++D V++A Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELATTNYEKLKTAYQNLQFRLNNETTEEVLDKEVVNA 345 Query: 355 -----------LYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNASAH----IL 392 + +D NT +A+ + ++L R S N + L + NA+ IL Sbjct: 346 VTQELEKFEEYMQDDFNTANALSSWYELVRISNSYTSKETVNKETLELLNAAFETYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V ++ NK IE L+ ER K + F+ AD IR L+ +G +LED K Sbjct: 406 GINVKED--NKLDDSYIENLIAEREQARKDRNFALADKIRDDLKEQGIVLEDTK------ 457 Query: 453 RMTRWKQK 460 + RWK++ Sbjct: 458 QGVRWKKQ 465 >gi|89893193|ref|YP_516680.1| hypothetical protein DSY0447 [Desulfitobacterium hafniense Y51] gi|219666466|ref|YP_002456901.1| cysteinyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] gi|122997351|sp|Q250Q6|SYC_DESHY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781676|sp|B8G1U2|SYC_DESHD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89332641|dbj|BAE82236.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536726|gb|ACL18465.1| cysteinyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] Length = 477 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 175/496 (35%), Positives = 255/496 (51%), Gaps = 61/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ + EF+ + + MY CGPTVY++ H+GN R ++VFD++ R L Y Sbjct: 3 LRLFNTMSHQKEEFKPREEGKVGMYTCGPTVYNYFHVGNGRMLVVFDMIRRYL--LYKGY 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII+R ++E + ++ KD L + + P+ Sbjct: 61 DVTFVQNFTDIDDKIIKRGQEE------GRDPLELAQDYIGEYFKDAAALNLMPASIHPK 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HIP+MI +I+ + G AY + ++ F +P YG S R +++ + G RV Sbjct: 115 ATDHIPEMIEIIKGLEEQGLAYAVDGDVYFAVDKLPAYGKLSGRTLEDMQAGARVEVGER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG FDIHGGG DL+FPH Sbjct: 175 KQNPMDFALWKNAKPGEPFWESPWGKGRPGWHIECSAMSLKYLGSGFDIHGGGGDLVFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ E A W+HN FL + +KMSKS GNF T+ E+LE +P Sbjct: 235 HENEIAQAEGYLHGETFARYWMHNAFLTINQQKMSKSLGNFFTVREILE-------HFPG 287 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-----DPAVLSA----- 354 VIR +L THYR P+DF + L A+ L + + + +A Sbjct: 288 EVIRFYLLGTHYRSPLDFDDENLQMAQKGLERLQTSIRLADEALGRQGQNSADAASGQKL 347 Query: 355 --------------LYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASA 389 + +D N+ A +L +L + + A Sbjct: 348 RAAAEEARREFAEAMDDDFNSALAYASLFELGKAINAHVQAYPYSSEGLLKARATLWELA 407 Query: 390 HILGIEVCK-----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 +LG ++ K E N+ + +E L++ R I K K + +D IR +L+ G +LED Sbjct: 408 DVLGFDLAKPANQAEAGNQKLDQVMELLLEVRAIARKKKDWEMSDLIRDRLKDLGIVLED 467 Query: 445 YKNPDNGQRMTRWKQK 460 + RW K Sbjct: 468 T------PQGARWTLK 477 >gi|313884762|ref|ZP_07818517.1| cysteine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312620023|gb|EFR31457.1| cysteine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 475 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 172/497 (34%), Positives = 246/497 (49%), Gaps = 63/497 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYNTL R+ +F P+ + MYVCGPTVY++ HIGNAR + FD + R L+Y Sbjct: 1 MTIQIYNTLTRQKEDFVPQVPNQVSMYVCGPTVYNYIHIGNARSAVAFDTVRRYLQYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDKII+ A+ E + ++ K F +DT + L Sbjct: 61 Q--VNYVSNFTDVDDKIIKAAKAEDL------STEALSDKYIAAFKEDTAAINILPANIH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----R 178 PR +HI ++I I+ +I HAY + ++ F T S YG S + I E ++G Sbjct: 113 PRVKDHITEIIDYIKVLIESDHAYASQGDVYFRTQSFDGYGKLSHQSISELEIGASQRTD 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E K++P DF LWK + E W SPWG GRPGWHIECS MS+ YLG DIHGGG Sbjct: 173 TAETDRKEDPLDFALWKSAKEGEVSWPSPWGPGRPGWHIECSVMSTKYLGDTLDIHGGGQ 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQ+ + E AN W+HNGF+ +G KMSKS GNF+ + +LL Sbjct: 233 DLEFPHHENEIAQAEAHNHGENFANYWMHNGFVTFGEDGEKMSKSLGNFVLLRDLL---- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------- 346 + V+R + HYR P+ + Q L EA+ + + + S + Sbjct: 289 ---KEADPMVVRYLLGTVHYRRPLRYDDQALQEAQTNIKRLEEVSRRLDLRLADATTQAN 345 Query: 347 -------------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLL 382 ++ + A+ +D N + + + +L +E + + Sbjct: 346 LDTDEANLAVLAQLEADFIQAMDDDFNAANGMTVIFELVKEINRYLQSEVVSEKVLSKMQ 405 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 IF I G+ E + I+ L+ ER + K K F AD IR QL+ +G L Sbjct: 406 EIFKDLLAIFGLVF--ETKEDLLDQEIQALIDERNVARKAKDFGRADEIRDQLKEQGIYL 463 Query: 443 EDYKNPDNGQRMTRWKQ 459 +D + T WK+ Sbjct: 464 DDT------PQGTTWKR 474 >gi|237736150|ref|ZP_04566631.1| cysteinyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] gi|229421703|gb|EEO36750.1| cysteinyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] Length = 472 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 185/491 (37%), Positives = 265/491 (53%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK+ EF+ + + MYVCGPTVY++ HIGNARP I FD + R + + Sbjct: 2 IKIYNTLTRKLEEFKPVKEGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYFEFRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 VTYV N TD+DDKII+RA +E + + +K + + +DT ++ +P Sbjct: 61 -VTYVSNFTDVDDKIIKRANEE------GISCEEVAAKYIKAYFEDTAKVNLKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI LI+++I GHAYE+ ++ FD S + Y S + +++ + G R+ Sbjct: 114 KATEHIGGMIKLIKSLIEKGHAYESQGDVYFDVESYKDEYLGLSHQNLEDLRSGARIEIS 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK++ EP W SPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 174 EIKKSPLDFALWKKAKEGEPSWNSPWGQGRPGWHIECSAMSHKYLGDTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C + A W+HNG++N+ G KMSKS GNF + ++LE + Sbjct: 234 PHHENEIAQSKCGCGGD-YARYWMHNGYINVNGEKMSKSLGNFFLLRDVLE-------HY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 V+RL +L +HYR+PIDF+ LT+A+ L + Sbjct: 286 DGRVVRLFVLSSHYRKPIDFSDAELTQAKTSLERIENALMRGKEAVIDVKADGSSCMELK 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--------------LLPIFNA 387 + ++A+ D NT + A+ +L +E K D + I N Sbjct: 346 EQLAVAKEKFIAAMDEDFNTSMGLGAIFELVKELNKAVDTPINAEGAEVVKETVEYIINV 405 Query: 388 SAHILGIEVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 LG+++ E + N+ S IE +++ R K ++ +D IR +L G ++D K Sbjct: 406 MEEALGVKLKLETVVGNMTSELIEFILELRREARNEKNWAMSDKIRDRLAEMGIKIKDGK 465 Query: 447 NPDNGQRMTRW 457 + T W Sbjct: 466 DK------TTW 470 >gi|15606347|ref|NP_213726.1| cysteinyl-tRNA synthetase [Aquifex aeolicus VF5] gi|6831683|sp|O67163|SYC_AQUAE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|2983551|gb|AAC07125.1| cysteinyl-tRNA synthetase [Aquifex aeolicus VF5] Length = 495 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 173/514 (33%), Positives = 251/514 (48%), Gaps = 78/514 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL K+ EF I+P + +Y CG TVYD +H+G+ R +IVFDV R L + Sbjct: 1 MSLRIYNTLSGKVEEFVPINPPKVLIYTCGVTVYDDSHVGHGRSLIVFDVFRRFLEHLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +VRN TD+DDKII RA+QE I + ++ D + + Sbjct: 61 Q--VKFVRNFTDVDDKIINRAKQECT------DFMTIADRYIARYYVDMENIRVRPADVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HIP++I +IQ ++ G+AY ++ F +YG S+R I+E G RV Sbjct: 113 PRVTEHIPEIIEVIQKLVEKGYAYVVEGDVYFSVKKFKDYGKLSKRDIEELIAGARVEPS 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL+F Sbjct: 173 EKKRDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECVAMVFKHLGETIDIHGGGLDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + A W+HNG + + G+KMSKS GN++T+ E+ + Sbjct: 233 PHHENEIAQAEAITG-KPFARYWMHNGLVTVGGQKMSKSLGNYVTLREVYT-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 V+RL +L THYR P+DF+ +++ E + ++ Sbjct: 285 HPDVLRLLVLFTHYRSPLDFSWEKMEETLKAYERLKNAIEDLELLKKLQVVESKEGGTHP 344 Query: 348 --------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 + ++L +D NT A+ ++KL E K + Sbjct: 345 LYEQVKEFEENFYASLSDDFNTPEALSHVYKLVGELNKVKNKAYSEGKITDRELSAYEFA 404 Query: 383 --PIFNASAHILGI--------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFS 426 + N I G+ E E I+ L++ R I K K F Sbjct: 405 SKSLLNTMKKIFGLLEDLYPECKVERVVERELEAGQVFDEKLIQILIEARNIARKEKVFK 464 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ADYIR +L+ G +LED T+WK++ Sbjct: 465 VADYIRDKLKELGIVLEDT------PAGTKWKKR 492 >gi|74317920|ref|YP_315660.1| cysteinyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259] gi|109894959|sp|Q3SHN1|SYC_THIDA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|74057415|gb|AAZ97855.1| Cysteinyl-tRNA synthetase, class Ia [Thiobacillus denitrificans ATCC 25259] Length = 454 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 180/475 (37%), Positives = 260/475 (54%), Gaps = 41/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I N+L R EF + P +RMYVCG TVYD H+G+AR +VFD++ R LR Sbjct: 2 LHITNSLTRTKEEFVPLSPGRVRMYVCGMTVYDLCHLGHARVFVVFDMVTRWLRASGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + + +T + + +D L L P H+PR Sbjct: 60 AVEYVRNITDIDDKIIKRAHENK------ETPAALTERFIAEMHEDERALGVLPPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ QM+ LI ++ G AY A N ++ + P YG S + +DE + G RV Sbjct: 114 ATAYVAQMLALIAQLVDRGLAYAAPNADVYYSVRGFPAYGRLSGKSLDELRAGERVEVDP 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK + P EP WESPWG+GRPGWHIECSAMS+ LG+ FDIHGGG DL FP Sbjct: 174 NKRDPMDFVLWKAAKPGEPAWESPWGQGRPGWHIECSAMSAELLGQHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+L + + Sbjct: 234 HHENEIAQSEGAHGC-TFVNYWLHNGFVRVDNEKMSKSLGNFFTIREVL-------QKYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---STSKGIID------PAVLSA 354 A ++R +L HYR P++++ L +A L++ + + G +D A Sbjct: 286 AEIVRFFILRAHYRSPLNYSDAHLDDARGALTRLYTALKGAPAAGPVDWDAPAAARFRGA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD-LLPIFNASAHILGI------EVCKEHLNKN--I 405 + +D NT AI L +LA E+ + ++G+ + + ++ Sbjct: 346 MDDDFNTPEAIAVLFELAAEANRGDTGAAQTLRNLGAVIGLLQRDASDFLQAGTSEAGLD 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE + R K + F+ +D IR +L + G +LED G T W+++ Sbjct: 406 ASEIEARIAARQAARKARDFAESDRIRDELAAAGIVLED------GPGGTTWRRQ 454 >gi|323483933|ref|ZP_08089308.1| hypothetical protein HMPREF9474_01057 [Clostridium symbiosum WAL-14163] gi|323693471|ref|ZP_08107680.1| cysteine-tRNA ligase [Clostridium symbiosum WAL-14673] gi|323402771|gb|EGA95094.1| hypothetical protein HMPREF9474_01057 [Clostridium symbiosum WAL-14163] gi|323502478|gb|EGB18331.1| cysteine-tRNA ligase [Clostridium symbiosum WAL-14673] Length = 468 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 178/491 (36%), Positives = 250/491 (50%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R EF ++ ++MYVCGPTVY+F HIGNARPMIVFD + R Y + Sbjct: 1 MKIFNTLSRTKEEFIPLEEGKVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E I+ + ++ KD + T P Sbjct: 60 -VNYVSNFTDVDDKIIKKAIEE------GVDADTISKRYIEECKKDMAMMNVKPATTHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +IQ++I GHAY + + F T S YG S + +++ + G R V Sbjct: 113 ATEEICGMLDMIQDLIDKGHAYTGKDGTVYFRTKSFKEYGKLSHKNLEDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P DF+LWK EP WESPW GRPGWHIECS MS YLG DIH GG DL Sbjct: 173 GEEDKEDPTDFVLWKPKKDGEPYWESPWCNGRPGWHIECSVMSKKYLGDSIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS ++ + A W+HN FLN++ RKMSKS GNF T+ E+ E Sbjct: 233 VFPHHENEIAQSEASNG-KTFAKYWMHNAFLNIDNRKMSKSLGNFFTVREISE------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------------P 338 + V+R ML HYR P++F+ + + ++ L + Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSAELMEASKNGLERILTAVEKLNDALKAAEGELTESEK 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNAS 388 + TS +++ +D NT AI A+ +L + S L Sbjct: 345 ENITSAKEFVQKFEASMDDDFNTADAISAVFELVKFSNTTASENSSKAYLSWLKETIEKL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI E + + IE ++ +R K K F+ AD IR +L G +LED + Sbjct: 405 CDVLGI--ITEKKEEILDSEIEDMIAQRQQARKDKNFALADEIRGKLLEMGIVLEDTR-- 460 Query: 449 DNGQRMTRWKQ 459 +WK+ Sbjct: 461 ----EGVKWKR 467 >gi|293572688|ref|ZP_06683656.1| cysteinyl-tRNA synthetase [Enterococcus faecium E980] gi|291607274|gb|EFF36628.1| cysteinyl-tRNA synthetase [Enterococcus faecium E980] Length = 470 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 177/494 (35%), Positives = 260/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANE------LGITAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L + T + S+ + D A Sbjct: 286 QNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPEVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|228477775|ref|ZP_04062403.1| cysteinyl-tRNA synthetase [Streptococcus salivarius SK126] gi|228250467|gb|EEK09681.1| cysteinyl-tRNA synthetase [Streptococcus salivarius SK126] Length = 447 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 164/468 (35%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYCGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------AGISTKELSDKFIAAFMEDTGQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 N++ ++I + ++ G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIITFVSTLVDKGFAYVSEGDVYFRVAKSNNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TERKENPLDFALWKAAKEGEVSWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AE+ L T A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTEQVNQAELQTYLDAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + + L +A+ + + F + GI +E L+++ Sbjct: 346 QEAMDDDFNTANGVTVLFDMAKWINSGNYDQTVKDAFEKMLQVFGIVFEEEVLDED---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 402 IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|225387932|ref|ZP_03757696.1| hypothetical protein CLOSTASPAR_01704 [Clostridium asparagiforme DSM 15981] gi|225045975|gb|EEG56221.1| hypothetical protein CLOSTASPAR_01704 [Clostridium asparagiforme DSM 15981] Length = 469 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 181/487 (37%), Positives = 252/487 (51%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF + P ++MYVCGPTVY+F HIGNARPMIVFD + R Y E Sbjct: 1 MKIFNTLSRRKEEFVPLTPGVVKMYVCGPTVYNFIHIGNARPMIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII++A +E I+ + ++ KD + T P Sbjct: 60 -VQYVSNFTDVDDKIIKKAIEE------GVDADTISKRYIEECKKDMASMNVKPATVHPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +I +I GHAY A + + F T S YG S + +++ + G R V Sbjct: 113 ATEEICGMLDMIGTLIEKGHAYAAADGTVYFRTGSFKEYGKLSHKNLEDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++PADF+LWK EP WESPW +GRPGWHIECS MS YLG+ DIH GG DL Sbjct: 173 GEEGKEDPADFVLWKPKKDGEPFWESPWCQGRPGWHIECSVMSKKYLGEQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ + A W+HN FLN++ RKMSKS GNF T+ E+ G Sbjct: 233 IFPHHENEIAQSESAN-DKPFATYWMHNAFLNIDNRKMSKSLGNFFTVREI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-------- 352 + V+R ML HYR P++F+ + ++ L + ++ Sbjct: 285 KYDLQVLRFFMLSAHYRSPLNFSADLMEASKNGLERIITCMEKLRDLESKARGNAETCDE 344 Query: 353 ---------------SALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNA 387 +A+ +D NT AI A+ +L + + D L + Sbjct: 345 QNNMAQADGLRGKYEAAMDDDFNTADAISAVFELVKLANSTADADSTARYVSYLKDMIQE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + +E+L+ R K K F+ AD IR +L G +LED + Sbjct: 405 LCDVLGI--ITERKAETLDSQVEELIAARQQARKEKNFALADEIRGRLLDMGIVLEDTRE 462 Query: 448 PDNGQRM 454 +R+ Sbjct: 463 GVKWKRV 469 >gi|304395563|ref|ZP_07377446.1| cysteinyl-tRNA synthetase [Pantoea sp. aB] gi|304356857|gb|EFM21221.1| cysteinyl-tRNA synthetase [Pantoea sp. aB] Length = 461 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 184/482 (38%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++I +T++ + D L L P +PR Sbjct: 61 -LNYVRNITDIDDKIIKRANEN------GESIETLTNRMIGEMHNDFAALGILPPDEEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L++ +I GHAY A+ +++FD S +YG+ SR+ +++ + G RV Sbjct: 114 ATRHIAEIIELVEKLIARGHAYVADNGDVMFDVLSDTDYGALSRQDLEQLQAGARVEVAD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKADEPAWSSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSSCAHDG-PYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------QHYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A +R ++ HYR +++ L +A L + ++ + SA Sbjct: 286 AETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDSSVPASGGDAFEARFRSA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + H L A++LGI L Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKSEDGASAHALASKLREMANVLGILQQDPELFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 N IE V+ R K ++ AD R +L + G I+ED G + + W+ Sbjct: 406 AQVNDEEVAEIEHWVKARADARAAKAWAEADIARDKLNALGVIVED------GPQGSSWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|253577158|ref|ZP_04854478.1| cysteinyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843402|gb|EES71430.1| cysteinyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 468 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 172/492 (34%), Positives = 247/492 (50%), Gaps = 58/492 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R EF ++ P ++MYVCGPTVY + HIGNARPMI FDV+ L Sbjct: 1 MGLQIYNTLTRAKEEFVSLTPGKVKMYVCGPTVYGYIHIGNARPMIFFDVVRSYLENQRY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I +A + +N + + + + +D L T Sbjct: 61 D--VNYVVNFTDVDDKLIRKAEE------MNLTVPEVAEMFIKAYYEDLDGLGIPRATAN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I I+++ G AYE+ ++ F T P YG S + I E + G R+ Sbjct: 113 PRVTENMDVIINFIRDLEQKGFAYESGGDVFFRTHKFPEYGKLSGQNIGELQFGIRIDVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + P E W SPWG GRPGWHIECSAMS LG DIHGGG DL F Sbjct: 173 ERKEHPEDFVLWKAAKPGEIHWSSPWGEGRPGWHIECSAMSRQLLGDTLDIHGGGQDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E+AQS A + A W+HNG++N++G KMSKS GN + + +L + Sbjct: 233 PHHECEVAQSEAATG-KPLARYWMHNGYINIDGEKMSKSLGNGVLVKDLRA-------QY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------------PQ 339 IR ML THYR P++F+ + + +AE + + P+ Sbjct: 285 KREAIRYFMLSTHYRNPLNFSEETMQQAERSVERISNAANNLRHRLNTAPQGGETKVTPE 344 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 + I + + +D NT AI A+ + E L +F Sbjct: 345 WAEKLETIRNLFHAKMQDDFNTPDAITAVFEWVSEVNALLQQPVTVRGDLEAALQLFEEM 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +L I + E + IE L+ ER K K ++ AD IR L+++G +LED Sbjct: 405 NGVLRIALPPE--TELPGEEIEALIAERAEARKAKNWARADEIRDLLDARGIVLEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + RW++K Sbjct: 460 ---PQGMRWRRK 468 >gi|257455309|ref|ZP_05620544.1| cysteinyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] gi|257447271|gb|EEV22279.1| cysteinyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] Length = 482 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 185/497 (37%), Positives = 262/497 (52%), Gaps = 61/497 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 I IY+++ + F ++ + MYVCG TVYD+ HIG+AR M+ FDV+ R LR+ Sbjct: 7 PMPITIYDSMSGQKRPFTPLEAGKVGMYVCGMTVYDYCHIGHARVMVGFDVVVRWLRHIG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII RA+ ++I +T + + +D L C P Sbjct: 67 YD--VNYVRNITDIDDKIINRAKDN------GESIYELTDRFIKAMHEDADNLGCERPNS 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 +P+AT+ IPQM +LIQ + AY+ A ++ + + YG S+R++ + + G R Sbjct: 119 EPKATDFIPQMQHLIQTLESKNLAYQGATGDVYYAVENFAEYGKLSKRRLADMQAGASER 178 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 V + KKNP DF+LWK + EP W+SPWG GRPGWHIECSAMS+ LG FDIHG Sbjct: 179 VNVETDKKNPFDFVLWKSAKQTEPSETKWQSPWGVGRPGWHIECSAMSTCCLGDTFDIHG 238 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI +++ Sbjct: 239 GGHDLQFPHHENEIAQSEGATG-KTYANNWMHVGFINVDGEKMSKSLGNFFTIRDVMG-- 295 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------KGIID 348 + IR +L +HYR P++F+ L EA+ L++ Q S G ID Sbjct: 296 -----QFHPETIRFFILSSHYRSPVNFSDSALKEAQTSLTRLYQALKSVESLTEPAGEID 350 Query: 349 PA-----VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF---------------NAS 388 A+ +D N+ A+ L LARE K +L + Sbjct: 351 ETPFETPFNQAMCDDFNSAGAVSVLFSLAREINKAVNLETVEGNAQALALATLLKDLAQP 410 Query: 389 AHILGI---EVCKEHLNKNI---SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +IL + + + + + IE ++ R K F+ AD IR L+++G L Sbjct: 411 LNILQLNPTDFLQAKVGETTGLSDSEIEAFIEARKQAKADKDFAKADQIRSDLKAQGIEL 470 Query: 443 EDYKNPDNGQRMTRWKQ 459 ED KN T W++ Sbjct: 471 EDGKN------GTTWRR 481 >gi|51246780|ref|YP_066664.1| cysteinyl-tRNA synthetase [Desulfotalea psychrophila LSv54] gi|61216190|sp|Q6AJ23|SYC_DESPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50877817|emb|CAG37657.1| probable cysteinyl-tRNA synthetase [Desulfotalea psychrophila LSv54] Length = 489 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 179/499 (35%), Positives = 255/499 (51%), Gaps = 66/499 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNTL K Q I+P+++++YVCG T YD+ HIG+AR + FD++ R LRY Sbjct: 1 MDIRVYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYLDY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+VRN TDIDDKII RA + + + +F D L L P + Sbjct: 61 K--VTFVRNFTDIDDKIIARANE------TGVTAQALAERFIDEFHTDMDNLGTLRPDIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +MI +IQ ++ AY + ++ + +S P YG S R I++ + G R+ Sbjct: 113 PKATEHIQEMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISIN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK S P EP WESPWG GRPGWHIECSAMS YLG+ FDIHGGG DLIF Sbjct: 173 EQKRNPMDFALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A+ + AN WIH+GF+ ++ KMSKS GNF+TI ++L+ + Sbjct: 233 PHHENEIAQSEGANG-KPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILD-------HY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------- 340 ++R + T YR P+DF+ + +AE L + + Sbjct: 285 HPEILRAFIFSTQYRNPLDFSEIAMQDAETALVRLYECLHDIQQLAKGDPTLPALISAKD 344 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------PI 384 + I+ A+ ND NT A+ L+ + + L + Sbjct: 345 AAKLNSIETRFQEAMNNDFNTALALGVLYDAIKIINRAQRALTDTPSALDVKMLKGSMTL 404 Query: 385 FNASAHILGI------EVCKEHLNKNIS------IAIEKLVQERLILLKMKKFSSADYIR 432 A I+G+ ++ K +S IE +Q+RL K ++ +D IR Sbjct: 405 IQKLAGIVGLLQEDANLFLQQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIR 464 Query: 433 KQLESKGFILEDYKNPDNG 451 L KG L+D + Sbjct: 465 DILLEKGITLKDGADGTGW 483 >gi|307729279|ref|YP_003906503.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1003] gi|307583814|gb|ADN57212.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1003] Length = 479 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 176/484 (36%), Positives = 255/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F ++P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 16 ESLRIYNTLARDKQTFVPLEPGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 75 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + Q +D L P + Sbjct: 76 Q--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIQALHEDADALGIARPDME 127 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + G+AY+A + ++ + YG S + +++ + G RV Sbjct: 128 PRATDFIPQMLGMIEKLEEKGYAYQAKDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 187 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK+S EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 188 NDAKEDPLDFVLWKQSKADEPADTGWDSRYGRGRPGWHIECSAMGCTLLGERFDIHGGGQ 247 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 248 DLQFPHHENEIAQSEAATG-QPFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 301 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R + HYR P++++ + +A L + Sbjct: 302 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALGRLYTALKDVTPDGAALDWNEAHA 359 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL----- 401 +A+ +D NT A+ L +LA E + D L + +LG+ + Sbjct: 360 QRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRSLGAVLGLLGREPRAYLQQA 419 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 AIE + ER+ + K +++AD IR +L G LED +T Sbjct: 420 AGAAVQGALEPAAIEAKIAERVAAKQAKDYAAADRIRAELLEAGVALEDKPGG-----LT 474 Query: 456 RWKQ 459 W++ Sbjct: 475 EWRR 478 >gi|257886072|ref|ZP_05665725.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,501] gi|257821928|gb|EEV49058.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,501] Length = 470 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 177/494 (35%), Positives = 259/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTASE------LGITAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L + T + S + D A Sbjct: 286 KNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASDNLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPKVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F+ +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFARSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|288940189|ref|YP_003442429.1| cysteinyl-tRNA synthetase [Allochromatium vinosum DSM 180] gi|288895561|gb|ADC61397.1| cysteinyl-tRNA synthetase [Allochromatium vinosum DSM 180] Length = 461 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 180/480 (37%), Positives = 260/480 (54%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+N+L R+ FQ I+P +RMYVCG TVYD+ H+G+AR ++VFDV+YR LR + Sbjct: 2 LQIHNSLTRQKAPFQPIEPGKVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLRALGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+RNITDIDDKII RA + + +T + Q +D+ L L PT +PR Sbjct: 61 -VTYIRNITDIDDKIIRRANEN------GEPFQALTERFIQAMREDSEALGVLPPTDEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +++ ++Q +I G AY A+ ++ + S P+YG S + + + G+RV Sbjct: 114 ATAHIGEILAMVQTLIDKGLAYVADNGDVYYAVSRFPDYGKLSGKDPADLRAGSRVEIGE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 174 SKRDPLDFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTCCLGNHFDIHGGGADLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E N+W+HNGF+ + KMSKS GNF T+ E+L R + Sbjct: 234 HHENEIAQSEGATG-EPFVNVWMHNGFVRVNEEKMSKSLGNFFTVREIL-------RLYR 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 +R +L +HYR P+++ L +A L++ PA +A+ Sbjct: 286 PEEVRYFILTSHYRSPLNYDDSALQKARAALTRLYTALRGLPEAAPAEGEAFRARFQAAM 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHDL--------LPIFNASAHILGIEVCKEH------- 400 +D NT A+ L +LARE + + LG+ Sbjct: 346 DDDFNTPEALAVLFELAREINRLRSDGSDQAAAHGALLRELGAALGLLQDDPERYLRGGA 405 Query: 401 -LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE ++ +R + ++ AD +R+ L + G +LED G + T W++ Sbjct: 406 DADGPSDAEIEAMIAQRRAARANRDWAEADRLREALTAAGIVLED------GPQGTTWRR 459 >gi|220910551|ref|YP_002485862.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7425] gi|254781541|sp|B8HQA4|SYC_CYAP4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|219867162|gb|ACL47501.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7425] Length = 494 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 186/513 (36%), Positives = 272/513 (53%), Gaps = 76/513 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R F+ ++P +++MY CG TVYD+ H+G+AR IV+DV+ R L++ Sbjct: 1 MPLSLYNTLTRHQEPFEPLEPGHVKMYCCGVTVYDYCHLGHARSYIVWDVVRRYLQWSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV+N TDIDDKI+ RARQE N + ++ + Q + +D RL L Sbjct: 61 Q--VRYVQNFTDIDDKILNRARQE------NSTMQAVSDRFIQAYHEDMQRLNILLADVY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVP 180 P+AT+ IP++I LIQ ++ G+AY + ++ + P+YG S R++++ + G RV Sbjct: 113 PKATDVIPEIIQLIQTLVDQGYAYAVDGDVYYAVDRFPDYGKLSGRQLEQMQAGASGRVD 172 Query: 181 E-KYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 + + K++P DF LWK + E W+SPWG+GRPGWHIECSAM LG DIH Sbjct: 173 DTEPKKRHPLDFALWKAAKSEELSVYQPWDSPWGKGRPGWHIECSAMVRKELGHTIDIHC 232 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG+DLIFPHHENEIAQS A R + A+ W+HNGF+N++G KMSKS GNF TI L + Sbjct: 233 GGMDLIFPHHENEIAQSEAATRAD-LAHYWLHNGFVNIQGEKMSKSLGNFKTIRAFLNS- 290 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQ 339 ++RL +L HYR+PIDF+ + +T A+ +W Sbjct: 291 -----GVDPMMLRLFVLQAHYRKPIDFSDETITAAQHSWQTLQEGLRFGYDYGQQLRWED 345 Query: 340 TSTS------------KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP---- 383 S G +A+ +DLNT SAI L +LA+E + +L+ Sbjct: 346 YQDSSFGDPACMRIPDSGAEIERFRAAMDDDLNTASAIAVLFELAKELRREGNLISHAGQ 405 Query: 384 -------------IFNASAHILGIEVCKE----HLNKNISIAIEKLVQERLILLKMKKFS 426 A +LG+EV E + IE L+Q+R K K ++ Sbjct: 406 PQLDPQELRSIWQTLVCLAQVLGLEVSPETEVTADDGLSEAEIEDLIQQRQAARKAKNYA 465 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 D IR +L++KG L D K+ T+W + Sbjct: 466 EGDRIRNELKTKGITLIDQKDGS-----TKWIR 493 >gi|270291200|ref|ZP_06197423.1| cysteinyl-tRNA synthetase [Pediococcus acidilactici 7_4] gi|270280596|gb|EFA26431.1| cysteinyl-tRNA synthetase [Pediococcus acidilactici 7_4] Length = 472 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 177/492 (35%), Positives = 252/492 (51%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT+ R F+ + + MYVCGPTVY++ HIGNAR +I FD + R L Y + Sbjct: 2 IKLYNTMTRSKEVFKPLVDQQVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A+ E N + + + F +D L T PR Sbjct: 61 -VRFVSNFTDVDDKMIKAAQAE------NITVPELAERYIAAFKEDVQALNVEPATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I +I + ++I +AY + + NYG+ S + IDE + G Sbjct: 114 ATENIADIIAFVADLIEKDYAYVVEGNVYYRARRFKNYGALSHQNIDELEQGASQHINDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E WE+PWG+GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETMQKEDPIDFALWKAAKPGEIAWEAPWGKGRPGWHIECSVMSTKYLGDTFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + + A W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 QFPHHENEIAQSEARTGV-QFARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA 350 + V+R M T YR+PI +T L +A+ L K + T+ G DPA Sbjct: 287 -KQVNPQVLRFLMSTTQYRKPIQYTETSLQDAKNNLEKLQNAYVNLNYRLQTADGAADPA 345 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 ++A+ +D N + I +++ AR + L F Sbjct: 346 VDQQAAALQADFVAAMDDDFNAQNGITVVYEFARLINVYSEQATVNHEQIARLAKQFAEM 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A I GIE+ IE LV++R + F ++D +R QL+ G ILED Sbjct: 406 AAIFGIELA-TATEAPADEKIEALVKQRDAARAARDFETSDRLRDQLKEMGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 462 ---PQGTRWRKK 470 >gi|160872079|ref|ZP_02062211.1| cysteinyl-tRNA synthetase [Rickettsiella grylli] gi|159120878|gb|EDP46216.1| cysteinyl-tRNA synthetase [Rickettsiella grylli] Length = 466 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 179/487 (36%), Positives = 262/487 (53%), Gaps = 53/487 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K F+ + + MYVCG TVYDF HIG+AR ++VFDV+ R L+ + Sbjct: 2 LKIYNTLTQKKEAFKPMIAKKVGMYVCGMTVYDFCHIGHARVVVVFDVILRYLKMQGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDIDDKII+RA++ N++ +T + + +D RL L P +P+ Sbjct: 61 -VNYIRNITDIDDKIIKRAQEN------NESPFELTQRMIKAMHEDFNRLNTLPPNAEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+ I +I LIQ ++ +AY + N +I FD YG + + + + + G RV Sbjct: 114 ATDAIVYIIALIQRLVDKAYAYRSENGDICFDVKKFKTYGDLAHQNVQKLRRGLRVAVDI 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK++ EP WESPWG GRPGWHIECSAMS LG+ FDIHGGGLDL+FP Sbjct: 174 TKKDPLDFVLWKKAKSGEPSWESPWGPGRPGWHIECSAMSMAALGEHFDIHGGGLDLVFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HH+NEIAQS +K N WIH GF+ ++ +KMSKS GNF T+ ++L + +P Sbjct: 234 HHQNEIAQSEGVT-DKKFVNTWIHVGFVQIDRQKMSKSLGNFFTLRDVL-------KQYP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------STSKGIIDP 349 A V+R ++ +HYR PI ++++ L A+ L + + S Sbjct: 286 AEVVRYFLISSHYRSPIQYSLENLQAAQAALQRLYTSLRGLVGKGPQKFVLEESSKEYQE 345 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK--- 398 A+ +D NT A+ L +LAR + + A +LGI + Sbjct: 346 KFEHAMNDDFNTPDALAILFELARRINRLRETNSKHAQRDANCLQYLASLLGILQQEPEQ 405 Query: 399 -----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ I L+ R K + AD IR +L + +LED Sbjct: 406 FLKLNQEKDPHLVEKINGLMNARNHARAAKNWQEADRIRDELLALNIVLEDTTT------ 459 Query: 454 MTRWKQK 460 T+W++K Sbjct: 460 GTQWRRK 466 >gi|83748223|ref|ZP_00945249.1| Cysteinyl-tRNA synthetase [Ralstonia solanacearum UW551] gi|207743491|ref|YP_002259883.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum IPO1609] gi|83725064|gb|EAP72216.1| Cysteinyl-tRNA synthetase [Ralstonia solanacearum UW551] gi|206594889|emb|CAQ61816.1| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum IPO1609] Length = 465 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 256/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASAY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGALTDRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQANGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQAEGANG-NTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + + V+R +L +HYR ++++ L +A L++ A Sbjct: 287 -KVYDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL---- 401 A+ +D NT A+ L +LA E K L+ A ++G+ H Sbjct: 346 GQRFREAMNDDFNTPVAMAVLFELASEVNKTRSPALVNQLAALGGVMGLLGRDPHAFLQG 405 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + +E ++ R + + F+ AD IR L + G +LED +T Sbjct: 406 GVGAAADGLDAAEVEARIEARRVAKAERDFARADGIRADLLAAGIVLEDKPGG-----VT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|126654401|ref|ZP_01726146.1| cysteinyl-tRNA synthetase [Bacillus sp. B14905] gi|126589151|gb|EAZ83335.1| cysteinyl-tRNA synthetase [Bacillus sp. B14905] Length = 466 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 171/489 (34%), Positives = 250/489 (51%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R +Y Sbjct: 1 MSIQIFNSLSRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYFQYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDKII+ A + + + + +T + + +D T L C Sbjct: 61 D--VKFVSNFTDVDDKIIKAANE------LGEEVHELTERFIAAYFEDVTALGCKKADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ +I IQ +I G+AYE+ ++ + T YG S + +D+ K+G R+ Sbjct: 113 PRVTEHMTDIIQFIQILIEKGYAYESAGDVYYRTRKFNGYGKLSHQSVDDLKIGARIEAG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K + DF LWK + P E WESPWG GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 173 EKKDDALDFALWKAAKPGEIFWESPWGNGRPGWHIECSVMAREHLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 233 PHHENEIAQSE-AHNDKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------KQI 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----------------- 345 V+R ML HYR PI+F + A L + + Sbjct: 285 DPQVLRFFMLSVHYRHPINFAKDLVEAAAAGLERIRTAYNNVKHRLTTTVSLGDHSDEWL 344 Query: 346 ----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A+ +D NT + I L +LAR + + F Sbjct: 345 NKITEQKAQFEEAMDDDFNTANGISVLFELARIANIYLNETNTCKKVLETFIETFEVLGD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI+ KE + I L+QER+ K + F+ +D IR L+++G ILED + Sbjct: 405 VLGIKFAKEEELLDEEID--ALLQERVEARKNRDFARSDEIRDHLQAQGIILEDTR---- 458 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 459 --QGTRWKR 465 >gi|222152121|ref|YP_002561281.1| cysteinyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402] gi|222121250|dbj|BAH18585.1| cysteinyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402] Length = 469 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 172/483 (35%), Positives = 256/483 (53%), Gaps = 49/483 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + I +YNTL R +F I+ ++MYVCGPTVY++ HIGNARP I FDV+ R Y Sbjct: 5 RMITLYNTLTRSKEKFVPIEEGRVKMYVCGPTVYNYIHIGNARPAISFDVVRRYFEYRGY 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV N TD+DDK+I+ A + + + + I + + + +DT L C TH Sbjct: 65 E--VDYVSNFTDVDDKLIKAANE------LGETVPEIADRFIEAYFEDTHALNCKTATHH 116 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR +H+ +I I +I G+AYE+ ++ F T YG S + IDE K+G R+ Sbjct: 117 PRVMDHMEDIIEFIDELIKKGYAYESGGDVYFRTRKFEGYGKLSHQSIDELKVGARIQAG 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K + DF LWK + P E W+SPWG GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 177 ELKDDALDFALWKTAKPGEISWQSPWGEGRPGWHIECSVMAKKHLGDSIDIHAGGSDLTF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 237 PHHENEIAQSE-AHNDTTFANYWLHNGFINIDNEKMSKSLGNFILVHDII-------KEI 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R M+ HYR PI++ ++ + A+ L + + Sbjct: 289 DPNVLRFFMISVHYRNPINYNMELVASAKAGLERIQNAYQAMKERQAISVDVVNHAETIL 348 Query: 345 --GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHI 391 I +A+ +D NT +AI A ++LA+++ + + +F + + Sbjct: 349 VIDNILKQFETAMDDDFNTANAITAWYELAKQANIYNQNPSTDLKVINRFIEVFEVFSEV 408 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LG+++ + + + +E+L++ER K K F AD IR L+++ ILED Sbjct: 409 LGVKL--DTSDTLLDEEVERLIEERQEARKNKDFKRADEIRDALKAQNIILEDTAQGVRY 466 Query: 452 QRM 454 +R Sbjct: 467 KRG 469 >gi|304385485|ref|ZP_07367830.1| cysteine--tRNA ligase [Pediococcus acidilactici DSM 20284] gi|304328692|gb|EFL95913.1| cysteine--tRNA ligase [Pediococcus acidilactici DSM 20284] Length = 472 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 252/492 (51%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNT+ R F+ + + MYVCGPTVY++ HIGNAR +I FD + R L Y + Sbjct: 2 IKLYNTMTRSKEVFKPLVDQQVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A+ E N + + + F +D L T PR Sbjct: 61 -VRFVSNFTDVDDKMIKAAQAE------NITVPELAERYIAAFKEDVQALNVEPATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT +I +I + ++I +AY + + NYG+ S + IDE + G Sbjct: 114 ATENITDIIAFVADLIEKDYAYVVEGNVYYRARRFKNYGALSHQNIDELEQGASQHINDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W++PWG+GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETMQKEDPIDFALWKAAKPGEIAWKAPWGKGRPGWHIECSVMSTKYLGDTFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + + A W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 QFPHHENEIAQSEARTGV-QFARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA 350 + V+R M T YR+PI +T L +A+ L K + T+ G DPA Sbjct: 287 -KQVNPQVLRFLMSTTQYRKPIQYTETSLQDAKNNLEKLQNAYVNLNYRLQTANGAADPA 345 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 ++A+ +D N + I +++ AR + L F Sbjct: 346 VDQQAAALQADFVAAMDDDFNAQNGITVVYEFARLINVYSEQATVNHEQIARLAKQFAEM 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A I GIE+ IE LV++R + F ++D +R QL+ G ILED Sbjct: 406 AAIFGIELA-TATEAPADEKIEALVKQRDAARAARDFETSDRLRDQLKEMGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 462 ---PQGTRWRKK 470 >gi|319946262|ref|ZP_08020502.1| cysteine--tRNA ligase [Streptococcus australis ATCC 700641] gi|319747644|gb|EFV99897.1| cysteine--tRNA ligase [Streptococcus australis ATCC 700641] Length = 450 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 180/472 (38%), Positives = 248/472 (52%), Gaps = 39/472 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMSRDLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + K F +D T L T Sbjct: 61 GYE--VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PR + +I + ++I G+AYE+ ++ F NY + + +++ ++G Sbjct: 113 RHPRVVEFMDDIIRFVTDLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGR 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E WESPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEVSWESPWGPGRPGWHIECSVMSTGILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA----- 350 V+R HYR+PI+FT + + +AE L T G +DPA Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGEVDPADLQSF 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKN 404 ++A+ D+N + I + +LA+ H D+ + GI +E L + Sbjct: 345 VDKFVAAMDEDINAANGITVVFELAKWINSGHYDQDVKEALAKMLEVFGIVFVEEVLAAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER K F+ AD IR QL ++G L D K G R TR Sbjct: 405 ----IEALIAERQEARANKDFARADEIRDQLAAQGIKLLDTK---EGVRWTR 449 >gi|289665721|ref|ZP_06487302.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 476 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 196/496 (39%), Positives = 268/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++NTL R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNTLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLSALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + N IS IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ------NVPISTITDRFAAIYRQDMAALGVMPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T +D Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALDADGGSDVGSSKT 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARES-----------------TKNHDLLPIFNASA 389 V +AL +DLNT A+ + +A E+ + H + + Sbjct: 346 IPAEVEAALDDDLNTPLALSVIASIAAEARALRNELVHGGEPLGRMNELHAVRAKLLGAG 405 Query: 390 HILGIEVCKEHL------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 LG+ + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFSRGTDAGDDARITALVEERNAAKKAKDFARADAIRKQLADQGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|332970727|gb|EGK09707.1| cysteine--tRNA ligase [Desmospora sp. 8437] Length = 462 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 171/486 (35%), Positives = 251/486 (51%), Gaps = 56/486 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 ++NT RK+ F+ + MYVCGPTVY++ HIGNAR + FDV+ R LRY + V Sbjct: 1 MFNTQTRKLEPFRPQHDRKVAMYVCGPTVYNYIHIGNARVFVFFDVVRRYLRYKGYD--V 58 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYV+N TD+DD++IE A++E N + + + + + D L P+AT Sbjct: 59 TYVQNFTDVDDRLIESAKRE------NTTVKELAERYIRAYFDDMDALGVQRADVHPKAT 112 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 HIP+M I +I G+AYE ++ + +YG S + ++E G RV K+ Sbjct: 113 EHIPEMQEAILTLIDKGYAYEREGDVYYRALRKEDYGKLSGQSVEELNAGARVEVNEKKE 172 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 P DF LWK++ P E WESPWGRGRPGWHIECSAMS YLG D+H GG+DL FPHHE Sbjct: 173 TPLDFALWKKAKPGEISWESPWGRGRPGWHIECSAMSRKYLGDTLDVHAGGMDLCFPHHE 232 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 NEIAQS + W+HNG++N+ KMSKS GN + ++EL E + Sbjct: 233 NEIAQSEAWT-EKPFVRYWLHNGYINMGNEKMSKSLGNVVRVHELRE-------QYAPRA 284 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDP-------- 349 +R +L HYR PI F+ + + + E L ++ + +G +P Sbjct: 285 LRYFLLSAHYRNPISFSHEAIRQIEGSLERFDTAVTNLHHRMGAAQEGEAEPEVRERLAS 344 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKN--------HDLLPIFNAS----AHILGI 394 +A+ +DLNT + I LH+ + + + L + + ILG+ Sbjct: 345 LTGEFEAAMDDDLNTANGISVLHEAVKFANETVARSVVPKGSLAMLLDWIHRFGGEILGL 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E +++ IE L++ER + F AD IR +L ++G ILED + Sbjct: 405 VTAGEE--DSLAGEIEALIEERQQARAARDFKRADAIRDRLAAQGIILEDT------PQG 456 Query: 455 TRWKQK 460 RW++K Sbjct: 457 VRWRRK 462 >gi|329925602|ref|ZP_08280443.1| cysteine--tRNA ligase [Paenibacillus sp. HGF5] gi|328939731|gb|EGG36073.1| cysteine--tRNA ligase [Paenibacillus sp. HGF5] Length = 468 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 249/490 (50%), Gaps = 58/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F A +P +++YVCGPTVYD+ HIGNARPMI FDV+ Sbjct: 3 LQIYNTLTRMKETFVAQEPGKVKIYVCGPTVYDYIHIGNARPMIFFDVVRAYFENQG--N 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I +A Q + + K + +D L T PR Sbjct: 61 DVNYVVNFTDVDDKMIRKAEQ------TGTTVPEVAEKFINAYYEDLDGLGIPRATLNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+++ +I IQ +I AYE ++ + T +YG S++ +DE + G R+ Sbjct: 115 VTDNMESIIEFIQELIDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVDKR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL FPH Sbjct: 175 KENPEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E+AQS + AN W+HNG++ + KMSKS GN + + EL E + Sbjct: 235 HECEVAQSEALTG-KPLANYWMHNGYIRINNEKMSKSLGNGVLVKELRE-------QYTK 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------------SKGII 347 +R ML THYR P++++ + + +A+ + + + S+ + Sbjct: 287 EAVRYFMLSTHYRNPLNYSDEVMEQAQNSVERLANAAANVEHRLGTAIGSKDDQVSQDVA 346 Query: 348 DP------AVLSALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNASAH 390 D + +D NT AI A+ + A E+ + H++L FN Sbjct: 347 DKISAVLVEFHEKMQDDFNTPDAITAMFQWASEANQLLKEASIPAANLHEVLRAFNEMNS 406 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +L I ++ + IE L+ ER+ K K ++ AD IR +L +G +LED Sbjct: 407 VLRI--VNTGTDELLDEEIEALIAERVEARKNKNWARADEIRDKLADEGIVLEDT----- 459 Query: 451 GQRMTRWKQK 460 + RW++K Sbjct: 460 -AQGMRWRRK 468 >gi|261409541|ref|YP_003245782.1| cysteinyl-tRNA synthetase [Paenibacillus sp. Y412MC10] gi|261286004|gb|ACX67975.1| cysteinyl-tRNA synthetase [Paenibacillus sp. Y412MC10] Length = 468 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 248/490 (50%), Gaps = 58/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F A +P +++YVCGPTVYD+ HIGNARPMI FDV+ Sbjct: 3 LQIYNTLTRMKETFVAQEPGKVKIYVCGPTVYDYIHIGNARPMIFFDVVRAYFENQG--N 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I +A Q + + K + +D L T PR Sbjct: 61 DVNYVVNFTDVDDKMIRKAEQ------TGTTVPEVAEKFINAYYEDLDGLGIPRATLNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+++ +I IQ +I AYE ++ + T +YG S++ +DE + G R+ Sbjct: 115 VTDNMESIIEFIQELIDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVDKR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL FPH Sbjct: 175 KENPEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E+AQS + AN W+HNG++ + KMSKS GN + + EL E + Sbjct: 235 HECEVAQSEALTG-KPLANYWMHNGYIRINNEKMSKSLGNGVLVKELRE-------QYTK 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-----------------SKGII 347 +R ML THYR P++++ + + +A+ + + + S+ + Sbjct: 287 EAVRYFMLSTHYRNPLNYSDEVMEQAQNSVERLANAAANVEHRLGTAIGSKDDQVSQDVA 346 Query: 348 DP------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAH 390 D + +D NT AI A+ + A E+ H++L FN Sbjct: 347 DKISAVLVEFHEKMQDDFNTPDAITAMFQWASEANQLLKEASIPAADLHEVLRAFNEMNG 406 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +L I ++ + IE L+ ER+ K K ++ AD IR +L +G +LED Sbjct: 407 VLRI--VNNGTDELLDEEIEALIAERVEARKNKNWARADEIRDKLADEGIVLEDT----- 459 Query: 451 GQRMTRWKQK 460 + RW++K Sbjct: 460 -AQGMRWRRK 468 >gi|206972194|ref|ZP_03233141.1| cysteinyl-tRNA synthetase [Bacillus cereus AH1134] gi|206732768|gb|EDZ49943.1| cysteinyl-tRNA synthetase [Bacillus cereus AH1134] Length = 465 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 250/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 +IR ML HYR PI+F+ + L L + + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 SEIEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ KE L + Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELSKEELLDEEIEELI---QKRIEARKNRDFALSDQIRDDLKERNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|90420879|ref|ZP_01228784.1| cysteine--tRNA ligase [Aurantimonas manganoxydans SI85-9A1] gi|90334854|gb|EAS48626.1| cysteine--tRNA ligase [Aurantimonas manganoxydans SI85-9A1] Length = 494 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 245/494 (49%), Positives = 320/494 (64%), Gaps = 42/494 (8%) Query: 3 KKIKIYNTLERKITEFQAID---PSN------IRMYVCGPTVYDFAHIGNARPMIVFDVL 53 + + ++NT++R EF+ +D P +RMYVCGPTVYD+AHIGNARP+IVFDVL Sbjct: 6 RGLTLWNTMKRAKEEFRPLDWQDPGKAEAGRHVRMYVCGPTVYDYAHIGNARPVIVFDVL 65 Query: 54 YRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113 YRLLR+ YG VTYVRNITD+DDKI RA +++P +P+N AI+ +T QF D Sbjct: 66 YRLLRHLYGADHVTYVRNITDVDDKINRRAARDYPDLPLNAAIAKVTQATADQFHADVAA 125 Query: 114 LACLAPTHQPRATNHI------PQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSR 167 L CL P H+PRAT+ + M+ +I +I GHAYEA E++FD +S+ +YG S Sbjct: 126 LGCLPPDHEPRATDFVTGRSDGHDMVSMIATLIEKGHAYEAGGEVLFDVTSMADYGQLSN 185 Query: 168 RKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGR-------------GRPG 214 RK+DEQ+ G R+ + HK+NP DF+LWK S+ EPGWE+PWGR GRPG Sbjct: 186 RKLDEQRAGARIAVEGHKRNPGDFVLWKLSSEGEPGWEAPWGREAWEASGRTGMPKGRPG 245 Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274 WHIECSAMS YLG+ FDIHGGGLDLIFPHHENEIAQS CA A +W+HNG+L LE Sbjct: 246 WHIECSAMSEAYLGQTFDIHGGGLDLIFPHHENEIAQSRCAHGTAAMAQVWMHNGYLQLE 305 Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 GRKMSKS+GNF+TI++LL T +FG RSW V+RLAMLMT YREPIDF+V+RL EAE L Sbjct: 306 GRKMSKSDGNFVTIHDLLHTDRFGRRSWAGAVLRLAMLMTQYREPIDFSVKRLEEAEEAL 365 Query: 335 SKWPQTST--SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL 392 + W + + L+AL +DL + +AI LH L + AS ++ Sbjct: 366 AGWARAVADVAPSAPSERFLAALSDDLASAAAIAELHALRKGDP------AALRASLDLI 419 Query: 393 GIEVC------KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 GI+V + + AI + ERL LL+ K F+ AD IR +L ++G L+D K Sbjct: 420 GIDVAGYLAATSDLAAPVPADAIAARIAERLDLLRGKNFAEADRIRDELLAEGIQLKDGK 479 Query: 447 NPDNGQRMTRWKQK 460 +PD G+R+T W+ K Sbjct: 480 DPDTGERITTWEMK 493 >gi|319399722|gb|EFV87971.1| cysteinyl-tRNA synthetase [Staphylococcus epidermidis FRI909] Length = 466 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 167/481 (34%), Positives = 258/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ F+ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I R+++ +N+++ I K + F +D L T R Sbjct: 61 -VIYVSNFTDVDDKLINRSKE------LNESVPEIAEKYIKAFYEDVGALNVKKATSNSR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ ++I I+ ++ G+AYE++ ++ F T YG S + +D+ K+G R+ Sbjct: 114 VMHHMGEIIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQ 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E W SP+G+GRPGWHIECS M+ H LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNHA-PFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVGAARSGLERIRNSYKLIEEREEIATDLEEQSEYIQQI 345 Query: 350 -----AVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNA----SAHILG 393 + + +D NT +A+ A + LA+ + K + +L F + +LG Sbjct: 346 DKILNQFETVMDDDFNTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + + IE+L++ER K K F+ AD IR L+++ ILED +R Sbjct: 406 VPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKARHIILEDTPQGVRFKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|27378901|ref|NP_770430.1| cysteinyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] gi|61216344|sp|Q89NP8|SYC_BRAJA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|27352051|dbj|BAC49055.1| cysteinyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 219/476 (46%), Positives = 293/476 (61%), Gaps = 39/476 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++Y+TL ++ F +D +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MELRLYDTLTKEKRTFVPLDANNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKI +RA ++ P +P+N+AI +T + +QF D L L P+ + Sbjct: 61 EAHVKYVRNITDVDDKINDRAARDFPGLPLNEAIREVTEQTGKQFHADVDALGALRPSVE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT-------SSIPNYGSFSRRKIDEQKM 175 PRAT HI +M +I+ ++ G AY A + ++F S++P YG+ S R +DE Sbjct: 121 PRATEHIGEMREIIERLVAGGFAYVAEDHVLFSPQAMNAANSTLPRYGALSNRSLDEMVA 180 Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFD 232 G RV +KK DF+LWK S P EP W SP G +GRPGWHIECSAM+ +LG+ FD Sbjct: 181 GARVDVAPYKKGSTDFVLWKPSKPGEPSWPSPAGIAAQGRPGWHIECSAMAWKHLGEYFD 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG+DL+FPHHENE+AQ+CCA E+ AN W+HNGFL +E KMSKS GNFITI+ELL Sbjct: 241 IHGGGIDLVFPHHENEVAQTCCAFHRERMANYWMHNGFLQVESEKMSKSLGNFITIHELL 300 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-- 350 WP V+RL ML THYR PID+T++ L E+ L W + + PA Sbjct: 301 AD-------WPGEVLRLNMLKTHYRSPIDWTMKSLEESAKTLDDWYRVAADVDPGRPAAS 353 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGI--------EVCKEHLN 402 V+ L +DLNT AI ALH L +N D+ S +LG E K+ + Sbjct: 354 VVEPLLDDLNTSLAIAALHGL-----RNSDV-SALAGSLRLLGFLSESAAQWEDRKQKAS 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E+L+ ER K F +D IR QL + G ++D K T W+ Sbjct: 408 GVDAGEVERLISERTAARGRKDFKESDRIRDQLAAMGVAIKDSK------EGTTWE 457 >gi|308050311|ref|YP_003913877.1| cysteinyl-tRNA synthetase [Ferrimonas balearica DSM 9799] gi|307632501|gb|ADN76803.1| cysteinyl-tRNA synthetase [Ferrimonas balearica DSM 9799] Length = 460 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 173/481 (35%), Positives = 257/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL R+ F+ I P + MYVCG T+YD+ HIG+AR + FD + R LR + Sbjct: 2 LQIFNTLTRQKEAFKPIQPGKVGMYVCGVTIYDYCHIGHARTYVAFDTMVRYLRSQGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITD+DDKII RA + N++ + ++ T+ +D L L P +P Sbjct: 61 -VTYVRNITDVDDKIIRRAAEN------NESCEALVARFTEAMYQDFDALNLLRPDIEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+ ++I +IQ ++ GHAY + ++ F+ + +YG SR+ +++ + G RV Sbjct: 114 VTGHMAEIIDIIQTLVNKGHAYVTDAGDVWFEVKTFDDYGKLSRQDLEQLQSGARVEVDE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK + P EP W SPWG GRPGWHIECSAM+ +LGKVFDIHGGG DL+FP Sbjct: 174 SKRNPMDFALWKSAKPGEPSWTSPWGEGRPGWHIECSAMNGKHLGKVFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H+G + + KMSKS NF TI E+L + + Sbjct: 234 HHENEVAQSCCAHDTN-YVNYWVHSGMVQVNKEKMSKSLNNFFTIREVL-------KQYQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVLSA 354 A +R +L +HYR ++++ + L +A L + +A Sbjct: 286 AESVRYFLLSSHYRSQLNYSEENLNQAHAALERLYTALRGVTPATELNLDNDHVARFQAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIE------VCKE 399 + +D NT A+ L LARE + L + ++G+ + Sbjct: 346 MNDDFNTAEALPVLFDLARELNITKEDGESEQAAQLAGLMRYLGGVMGLLEQAPEAFLQG 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L++ R K +++AD R +L + G +LED G T W++ Sbjct: 406 GGDDDEVAKIEGLIKARNDARASKDWAAADAARDELTAMGIVLED------GAGGTSWRR 459 Query: 460 K 460 K Sbjct: 460 K 460 >gi|289671266|ref|ZP_06492341.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 476 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 196/496 (39%), Positives = 268/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++NTL R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNTLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLSALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + N IS IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQ------NVPISTITDRFAAIYRQDMAALGVMPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T +D Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALDADGGSDVGSSKT 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARES-----------------TKNHDLLPIFNASA 389 V +AL +DLNT A+ + +A E+ + H + + Sbjct: 346 IPAEVEAALDDDLNTPLALSVIASIAAEARALRNELVHGGEPLGRMNELHAVRAKLLGAG 405 Query: 390 HILGIEVCKEHL------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 LG+ + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFARGTDAGDDARITALVEERNAAKKAKDFARADAIRKQLADQGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|302385700|ref|YP_003821522.1| cysteinyl-tRNA synthetase [Clostridium saccharolyticum WM1] gi|302196328|gb|ADL03899.1| cysteinyl-tRNA synthetase [Clostridium saccharolyticum WM1] Length = 467 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 183/490 (37%), Positives = 254/490 (51%), Gaps = 59/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF +++P I+MYVCGPTVY+ HIGNARP+IVFD + R Y E Sbjct: 1 MKIYNTLSRQKEEFVSLEPGKIKMYVCGPTVYNLIHIGNARPIIVFDTVRRYFEYKGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TDIDDKII++A +E I+ + ++ KD L T P Sbjct: 60 -VNFVSNFTDIDDKIIKKAIEEGVDAN------TISKRYIEECKKDMESLNIKPATKNPL 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I M+ +I+ +I GHAYEA + + F T + YG S + +++ + G R V Sbjct: 113 ATEEICGMLDMIEKLIASGHAYEAADGTVYFRTKTFGEYGKLSHKNLEDLQSGFREIKVT 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++P+DF+LWK EP WESPW +GRPGWHIECS MS YLG DIH GG DL Sbjct: 173 GEDGKEDPSDFVLWKPKKEGEPYWESPWCQGRPGWHIECSVMSKKYLGDQIDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A+ E A W+HNGFLN++ +KMSKS GNF T+ ++ G Sbjct: 233 IFPHHENEIAQSEAANGKE-FAKYWMHNGFLNIDNKKMSKSLGNFFTVRDI-------GE 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------- 349 + V+R ML HYR PI+F+ + ++ L + ++ Sbjct: 285 KYDLQVLRFFMLSAHYRSPINFSADLMEASKNGLERILTAVDKLKSLEATATTEKLLEGE 344 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASA 389 +A+ +D NT AI + +L + S + L Sbjct: 345 DNNSVQELVSKYEAAMDDDFNTADAISVIFELVKLSNSTANGDSSREYVTYLRDTIERLC 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LGI E + + IE ++ R K K F+ AD IR +L KG +LED + Sbjct: 405 EVLGI--ITEKEEEILDDEIEAMIAGRQQARKDKNFALADEIRGKLLEKGIVLEDTR--- 459 Query: 450 NGQRMTRWKQ 459 +WK+ Sbjct: 460 ---EGVKWKR 466 >gi|300311195|ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300073980|gb|ADJ63379.1| cysteinyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Length = 463 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 190/482 (39%), Positives = 260/482 (53%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++KIYNTL R F I+P +R+YVCG TVYD+ HIG+AR ++VFD++ R LR Sbjct: 2 SELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRNITDIDDKII+RA + + I+ +T++ +D L P H+ Sbjct: 62 E--VTYVRNITDIDDKIIKRA------VENGETIAQLTNRFIDAMNEDAAALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ LI + +G AY+A + ++ + P YG S + +D+ + G RV Sbjct: 114 PRATQYVPQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDV 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMSS LG FDIHGGG Sbjct: 174 NTGKRDPLDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 234 DLQFPHHENEIAQSEGAH-QHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------IIDPA-- 350 + + V+R +L HYR P++++ L +A L++ + D A Sbjct: 287 -KKYDPEVLRFFILRAHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVADEAHA 345 Query: 351 --VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCK-------- 398 + AL +D NT AI L +LA E ++ A A ILG+ + Sbjct: 346 VRLADALNDDFNTPVAIAVLFELANEVNRSRSPVQARQLKALAGILGLLQREPGEYLKGG 405 Query: 399 -EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 IE L+ R K F+ AD IR +L G ILED +T W Sbjct: 406 VAAAEGLGEAEIEALIAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGG-----LTEW 460 Query: 458 KQ 459 ++ Sbjct: 461 RR 462 >gi|262039625|ref|ZP_06012919.1| cysteine--tRNA ligase [Leptotrichia goodfellowii F0264] gi|261746382|gb|EEY33927.1| cysteine--tRNA ligase [Leptotrichia goodfellowii F0264] Length = 505 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 189/509 (37%), Positives = 271/509 (53%), Gaps = 75/509 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + K+ +YNT+ KI EF+ I+ ++MYVCGPTVY++ H+GNARP+++FD+L R +Y Sbjct: 9 ENKMNLYNTMSNKIEEFKPIEEGKVKMYVCGPTVYNYIHLGNARPVVIFDILARYFKYRG 68 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + VTYV+N TD+DDKII+RA +E + +T K Q F +DT L L Sbjct: 69 YD--VTYVQNFTDVDDKIIKRANEE------GISPKEVTEKYIQGFFEDTELLNILQDIK 120 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +P+ T ++P++I I+ +I +G+AYE + + FD +YG S +KIDE ++G RV Sbjct: 121 RPKVTENMPEIIETIEKLIENGYAYEIDGNVFFDVKKYEDYGKLSNQKIDELEIGARVDI 180 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K NP DF LWK+ EP W+SPWG+GRPGWHIECSAMS YLG+ FDIHGGG DLI Sbjct: 181 MEIKNNPLDFALWKKKKEGEPYWDSPWGQGRPGWHIECSAMSKKYLGETFDIHGGGQDLI 240 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA A W+HNGF+ + G KMSKS GNF + E+L Sbjct: 241 FPHHENEIAQSKCAYHGH-FAKYWVHNGFVQVNGDKMSKSTGNFFLLREILG-------K 292 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL--------------LSKWPQTSTSKGI- 346 + VIRL +L THYR+P++F+ + + + L K S+ + Sbjct: 293 FSGNVIRLFILSTHYRKPVNFSFEDMENTKKTLQNVISSIRRFEKSLEKLSSGIKSEDVS 352 Query: 347 -----------------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP------ 383 D + A+ D+NT A+ + RE+ + D + Sbjct: 353 DEKINEINKVFKEKIKSFDVKFIGAMDEDMNTPQALSTIFDQIRETNRFCDDIEKILDKE 412 Query: 384 -------IFNAS-----------AHILGI---EVCKEHLNKNISIAIEKLVQERLILLKM 422 +F A +LG+ + KE+ + IE L++ R K Sbjct: 413 RNDSSFLLFEALELSYKNLKTKIEDVLGVLLMDEKKENKDDLSKNLIELLIKIRTEARKE 472 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNG 451 K FS +D IR +L+ G ++D K+ Sbjct: 473 KNFSLSDEIRDELKKIGVEIKDNKDGTTS 501 >gi|262376233|ref|ZP_06069463.1| cysteinyl-tRNA synthetase [Acinetobacter lwoffii SH145] gi|262308834|gb|EEY89967.1| cysteinyl-tRNA synthetase [Acinetobacter lwoffii SH145] Length = 473 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 189/488 (38%), Positives = 273/488 (55%), Gaps = 57/488 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF I +YVCG TVYD+ HIG+AR ++ FD + R LR + V Sbjct: 6 LYNSEQRKKVEFVPRVEGQIDLYVCGMTVYDYCHIGHARTVVAFDYIIRFLRSQGWK--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII+RA + ++IS +TS+ +D +L CLAP P+AT Sbjct: 64 KYVRNITDIDDKIIKRANEN------GESISELTSRFIDAMNEDFAKLGCLAPDVAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 ++I QM +I N++ G AY +N ++ F+ YG S RK+++ + G RV + Sbjct: 118 DYIDQMQAMIGNLVDKGTAYPSNNGDVYFEVEKFAKYGRLSGRKLEDMQAGASERVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 178 EKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGADLTFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQSEASTG-EQYVNYWMHAGFINVDGEKMSKSLGNFFTIRDVIE-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STSKGIIDPA 350 V+R ++ +HYR P++++ L EA+ LS++ + T + Sbjct: 290 PEVVRYFIVSSHYRSPVNYSDVALKEAKNTLSRFYHSFKTYQAVYGDHLIETLDEALVER 349 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIFNA----SAHILGI--EVCKE 399 +A+ +D NT AI L ++ +E + N + I+ A +ILG+ + E Sbjct: 350 FNAAMRDDFNTPEAIAVLFEINKELNRTVKEENAEQAAIYYATLRHLTNILGLVQQNVDE 409 Query: 400 HLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 L +I IE L+Q+R K K+F+ AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQEALGLSPEQIEDLIQQRQDAKKAKEFARADEIRQSLLDQGVVLEDTR----- 464 Query: 452 QRMTRWKQ 459 + T W++ Sbjct: 465 -QGTVWRR 471 >gi|69245493|ref|ZP_00603457.1| Cysteinyl-tRNA synthetase, class Ia [Enterococcus faecium DO] gi|257879803|ref|ZP_05659456.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257882529|ref|ZP_05662182.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257891644|ref|ZP_05671297.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|257894121|ref|ZP_05673774.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|258614229|ref|ZP_05711999.1| cysteinyl-tRNA synthetase [Enterococcus faecium DO] gi|260559477|ref|ZP_05831658.1| cysteinyl-tRNA synthetase [Enterococcus faecium C68] gi|261206628|ref|ZP_05921326.1| cysteinyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289564989|ref|ZP_06445443.1| cysteinyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|293564124|ref|ZP_06678530.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1162] gi|293570060|ref|ZP_06681140.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1071] gi|294614954|ref|ZP_06694845.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1636] gi|294618278|ref|ZP_06697860.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1679] gi|294623060|ref|ZP_06701947.1| cysteinyl-tRNA synthetase [Enterococcus faecium U0317] gi|314940063|ref|ZP_07847246.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|314942530|ref|ZP_07849369.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|314949364|ref|ZP_07852705.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0082] gi|314952824|ref|ZP_07855796.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|314993743|ref|ZP_07859088.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|314994808|ref|ZP_07859940.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|68195744|gb|EAN10181.1| Cysteinyl-tRNA synthetase, class Ia [Enterococcus faecium DO] gi|257814031|gb|EEV42789.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257818187|gb|EEV45515.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257828004|gb|EEV54630.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|257830500|gb|EEV57107.1| cysteinyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|260074576|gb|EEW62897.1| cysteinyl-tRNA synthetase [Enterococcus faecium C68] gi|260079121|gb|EEW66814.1| cysteinyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289163196|gb|EFD11042.1| cysteinyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|291587432|gb|EFF19316.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1071] gi|291592240|gb|EFF23858.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1636] gi|291595494|gb|EFF26805.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1679] gi|291597533|gb|EFF28697.1| cysteinyl-tRNA synthetase [Enterococcus faecium U0317] gi|291604042|gb|EFF33570.1| cysteinyl-tRNA synthetase [Enterococcus faecium E1162] gi|313590992|gb|EFR69837.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|313591843|gb|EFR70688.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|313595058|gb|EFR73903.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|313598751|gb|EFR77596.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|313640663|gb|EFS05243.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|313644195|gb|EFS08775.1| cysteinyl-tRNA synthetase [Enterococcus faecium TX0082] Length = 470 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 177/494 (35%), Positives = 259/494 (52%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK EF I ++ MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 IKIYNTLTRKKEEFIPIQKGHVGMYVCGPTVYNYIHIGNARSTIAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + + + + + F +DT L T PR Sbjct: 61 -VDFVSNFTDVDDKIIRTANE------LGITAPEVADRFIRAFEEDTKALNVEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +H+P ++ IQ ++ G+AYE++ ++ + T NYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIQVLVEKGYAYESSGDVYYRTRKFENYGKLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQQKEDPLDFALWKQAKPGEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS +K AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KKFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPA 350 ++ V+R M T YR PI ++ + EA L + T + S+ + D A Sbjct: 286 KNVDPQVLRFFMATTQYRRPIRYSETTMKEAATNLQRLKNTFDNLKFRQETASENLADDA 345 Query: 351 ------------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + +D N + I +++LA+ D +F+ Sbjct: 346 DKIALLENLEQRFIEEMDDDFNAANGITVVYELAKWLNTYLDQPKVSAAVLAQGEALFSQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L++ER + F +D IR L+ KG +LED Sbjct: 406 WLSIFGILFTAEEL---LDEEIEQLIEERNQARSNRDFVRSDEIRDLLKEKGILLEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|300114660|ref|YP_003761235.1| cysteinyl-tRNA synthetase [Nitrosococcus watsonii C-113] gi|299540597|gb|ADJ28914.1| cysteinyl-tRNA synthetase [Nitrosococcus watsonii C-113] Length = 495 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 184/515 (35%), Positives = 263/515 (51%), Gaps = 82/515 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L RK EF I+ +RMYVCG TVYD H+G+AR M+VFDV+ R LR E Sbjct: 2 LRIYNSLTRKKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDVVARYLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA ++ ++I +T++ Q +D L L P +PR Sbjct: 61 -VMYVRNITDIDDKIIHRANEK------GESIHALTARYIQALHEDEASLQILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++ +++ ++ G+AY+ N +I +D S YG+ S + +++ + G RV Sbjct: 114 ATESMEAILAMVRQLLEQGYAYQGENGDIYYDVSHFEGYGALSGKHLEDLRAGERVQVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP WESPWG GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKPDEPAWESPWGPGRPGWHIECSAMSIQELGVHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+ L+ KMSKS GNF T+ E+LE + Sbjct: 234 HHENEIAQSEAATGSK-FVNYWMHNGFVRLDDEKMSKSLGNFFTVREVLE-------HYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTS 343 V+R +L +HYR P++++ Q+L A+ +++ + Sbjct: 286 PEVLRYFILSSHYRSPLNYSKQQLDTAKAAMTRLYTALRGIPRGDDRASAQGLSWEFVDG 345 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPIFNASAHILGI 394 + A+ +D NT A+ L+++ + L + A ILG+ Sbjct: 346 EDPFILRFREAMDDDFNTPEALALLNEVRHALNRARKGGDTEKGQSLAVLLRALGGILGL 405 Query: 395 EVCKEH----------------------LNKNISIA--------IEKLVQERLILLKMKK 424 + L S IE+LV +R + K K Sbjct: 406 LAHEPEQFLRDPRQMVVVSDTAKTTSLSLTSQTSTEKVVLSHDGIEQLVAQRTVARKNKD 465 Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ AD IR L+ +G LED T W++ Sbjct: 466 WAEADRIRGILKDQGITLEDTAA------GTLWRR 494 >gi|30018360|ref|NP_829991.1| cysteinyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|218235383|ref|YP_002364939.1| cysteinyl-tRNA synthetase [Bacillus cereus B4264] gi|33301673|sp|Q81J59|SYC_BACCR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226735047|sp|B7HJ28|SYC_BACC4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29893900|gb|AAP07192.1| Cysteinyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|218163340|gb|ACK63332.1| cysteine--tRNA ligase [Bacillus cereus B4264] Length = 465 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 249/489 (50%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 AEIEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ KE L + Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELSKEELLDEEIEELI---QKRIEARKNRDFALSDQIRDDLKERNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|83591300|ref|YP_431309.1| cysteinyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] gi|109894909|sp|Q2RFM3|SYC_MOOTA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83574214|gb|ABC20766.1| cysteinyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] Length = 476 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 187/497 (37%), Positives = 260/497 (52%), Gaps = 64/497 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL + EF ++P +RMYVCGPT Y++ H+GNARPM+VFD L R L Y + Sbjct: 1 MYLYNTLTGRKEEFTPVEPGRVRMYVCGPTTYNYIHLGNARPMVVFDTLRRYLEYRNYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I RAR+EH A +I + ++F KD L T PR Sbjct: 60 -VLYVQNFTDIDDKVINRAREEH------QAPLVIAERYIEEFFKDADALNVKRATLYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HI +I I ++ G AY A+ ++ F+ P YG S+R E + G RV Sbjct: 113 VSQHIDAIIAAIATLVERGFAYVADGDVYFEVEKFPAYGRLSKRTPGEMRAGARVEVNTS 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP WESPWG GRPGWHIECS M+ YLG FDIHGGG DLIFPH Sbjct: 173 KRNPLDFALWKAACPGEPSWESPWGPGRPGWHIECSTMALKYLGPGFDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ A W+HNGF+ + KMSKS GNF + ++L + + Sbjct: 233 HENEIAQAEAQTGC-TFARFWLHNGFITVNQEKMSKSKGNFFLVRDIL-------KRFRP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 +RL +L THYR PIDF L AE L + T G Sbjct: 285 LAVRLYLLATHYRSPIDFDDAGLLAAERGLERLENTRRLLGEARCQLTGTGAETTVPART 344 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-------- 389 + +SA+ +D NT A+ AL+ LARE + + +A Sbjct: 345 SALAGRAEELRQEFISAMDDDFNTARALAALYDLAREINSYLNGTTTIDPAALRTAAITF 404 Query: 390 -----HILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +LG+ + ++ ++ +S ++ ++Q R + + +++AD IR +L+ G +L Sbjct: 405 EQLGGEVLGLFGQARQQVDDELLSGLMDLILQVRQEARQRRDWATADTIRDRLKELGIVL 464 Query: 443 EDYKNPDNGQRMTRWKQ 459 ED R RWK+ Sbjct: 465 EDT------PRGPRWKR 475 >gi|257092145|ref|YP_003165786.1| cysteinyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044669|gb|ACV33857.1| cysteinyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 457 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 253/478 (52%), Gaps = 46/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R +F I P ++RMYVCG TVYD H+G+AR ++VFD++ R LR Sbjct: 2 LKIYNSLTRAKQDFVPITPGSVRMYVCGMTVYDHCHLGHARVLVVFDLVQRWLRASGL-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + ++I +T++ D L P H+PR Sbjct: 60 RVTYVRNITDIDDKIIKRALENK------ESIGDLTNRFIAFMNDDAAALGVEKPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++PQM+ LI + +G AY+ + ++ F P YG S + +D+ + G RV Sbjct: 114 ATEYVPQMLELIGRLEKNGLAYQVPDGDVNFSVRKFPGYGKLSGKALDDLRAGERVDVDG 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + EP W SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL FP Sbjct: 174 TKEDPLDFVLWKHAREGEPSWPSPWGDGRPGWHIECSAMSSVLLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+L R + Sbjct: 234 HHENEIAQSEGAHQCR-FVNYWMHNGFVRVDDEKMSKSLGNFCTIKEIL-------RKYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------AVLS 353 V+R +L HYR P++++ L +A LS+ + P Sbjct: 286 PEVLRFFILRAHYRSPLNYSDTHLDDARQALSRLYTALRTANTDPPSIDWDEPHALRFRD 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------HILGIEVCKEHL 401 A+ +D NT A L LA E ++ + ++ Sbjct: 346 AMDDDFNTPEACAVLFDLAAELNRSKSATLAGQLRGLAGLLGLLGRDPQVF-LQAAPSEG 404 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + IE L+ ER K +++AD IR L S G +LED G TRW++ Sbjct: 405 GELTAEQIESLISERAAAKAQKDYTAADRIRADLLSAGVVLED------GASGTRWRR 456 >gi|322388262|ref|ZP_08061866.1| cysteine--tRNA ligase [Streptococcus infantis ATCC 700779] gi|321140934|gb|EFX36435.1| cysteine--tRNA ligase [Streptococcus infantis ATCC 700779] Length = 447 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLRDFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + +K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVANKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVSDLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ LET Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALET------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +AE L T S Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDSGELQAFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D NT + I + ++A+ + + A + GI +E L++ Sbjct: 346 VAAMDEDFNTANGITVVFEMAKWINSGNYDATVKEALTAMLEVFGIVFVEEVLDE----E 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEVLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|172035425|ref|YP_001801926.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] gi|171696879|gb|ACB49860.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] Length = 482 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 173/502 (34%), Positives = 248/502 (49%), Gaps = 66/502 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R F I+ ++MY CG TVYD+ H+G+AR IV+DV+ R L++ Sbjct: 1 MTLTVYNTLTRNKEPFTTIEEGKVKMYCCGITVYDYCHLGHARTCIVWDVVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY++N TDIDDKI+ RARQE + ++ + + + +D L Sbjct: 61 D--VTYIQNFTDIDDKILNRARQEKT------TMEAVSERFIEAYFEDMECLNVAKADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + L+ + G+AY + ++ ++ YG S RK+++ + G Sbjct: 113 PRATHTLNGIQRLVSELEAKGYAYASEGDVYYNVHQFKPYGKLSGRKLEDLQAGASGRVA 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E KK+PADF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH G Sbjct: 173 VEDAEASKKKDPADFAVWKSAKPGEPAWDSPWGKGRPGWHIECSAMVRERLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI ELLE Sbjct: 233 GSDLIFPHHENEIAQSEAATG-KPLARYWLHNGMVKVGGEKMSKSLGNFTTIRELLE--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + +RL +L HYR+P+DFT + L A + Sbjct: 289 ----KFDPMAVRLFILQAHYRKPVDFTDEALEAATKGWQTLSEGLLFGFQQGSKLGFKEN 344 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 S + +D N + L ++A+E K +LL Sbjct: 345 RSELLPEFIQRFQDTVDDDFNFAGGLAVLFEIAKELRKEGNLLVHQGKTETPSELLQKQW 404 Query: 383 PIFNASAHILGIE-----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 A A +LG+E V E + AIE +++R K K F+ +D IR +L+ Sbjct: 405 QTLIALATVLGLEADSNPVNSEKSDGLDDAAIEAFIEKRKEARKNKNFAESDRIRDELKE 464 Query: 438 KGFILEDYKNPDNGQRMTRWKQ 459 +G IL D +T W + Sbjct: 465 QGVILVDQPGG-----VTIWHR 481 >gi|310644226|ref|YP_003948985.1| translation initiation factor if-1 [Paenibacillus polymyxa SC2] gi|309249177|gb|ADO58744.1| Translation initiation factor IF-1 [Paenibacillus polymyxa SC2] Length = 467 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 167/491 (34%), Positives = 251/491 (51%), Gaps = 57/491 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNT+ R F ++P ++MYVCGPTVYD+ HIGNARP+IVFDV+ L Y Sbjct: 1 MSLQIYNTMTRSREPFVPLEPGKVKMYVCGPTVYDYIHIGNARPVIVFDVVRSYLEYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I +AR+ +N + + K + +D L A + Sbjct: 61 D--VNYVVNFTDVDDKLIRKARE------LNMEVPAVAEKFIAAYHEDLAGLNVPAASIN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + +I I++++ G+AYE + ++ + T +YG S + ++E + G R+ Sbjct: 113 PRVTESMDLIIDFIKDLVDKGYAYENDGDVFYRTKKFKDYGQLSGQNLEELQFGIRINVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+N DF+LWK + P E W SPWG GRPGWHIECSAM+ HYLG DIHGGG DL F Sbjct: 173 ERKENAEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARHYLGDTLDIHGGGQDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E AQS + + W+HNG++ ++ KMSKS GN I + +L K Sbjct: 233 PHHECECAQSEVITG-KPLSRYWMHNGYIRIDNEKMSKSLGNGILVKDLRARHK------ 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------------------- 343 +R ML THYR P+++ + +++AE + + + Sbjct: 286 -PEALRYFMLSTHYRNPLNYNQETMSQAENSVERIANAVANVKHRLAIALKGNEEVSAEL 344 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASA 389 I + +D NT AI A+ + E+ + +L F++ Sbjct: 345 QMKLDGILQQFGEKMDDDFNTPDAITAVFEWVSEANLLLQRDVVNQAELQAVLHTFHSMN 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +L I E + + +E+L+ ER+ K K + AD IR L +KG +LED Sbjct: 405 TVLRI--YSEPSEELLDGEVEQLIAERVEARKTKNWGRADEIRDLLATKGIVLEDT---- 458 Query: 450 NGQRMTRWKQK 460 + RW++K Sbjct: 459 --AQGMRWRRK 467 >gi|325295505|ref|YP_004282019.1| cysteinyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065953|gb|ADY73960.1| cysteinyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 472 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 191/485 (39%), Positives = 262/485 (54%), Gaps = 52/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+++NTL K EF+ ++ ++MYVCGPTVYD AHIG+AR IVFDV+ R Y Sbjct: 2 IRVFNTLTEKKEEFKPLNDKTVKMYVCGPTVYDHAHIGHARSAIVFDVIRRWFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRN TD+DDKII+R+++E + K + + +D L PT++P+ Sbjct: 60 RVIYVRNYTDVDDKIIKRSKEEGIPWY------EVAKKYIESYEEDMKALNIKEPTYKPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I +I+ +I G+AYE+ ++ F YG S+RK +E G R+ Sbjct: 114 VTEHIEEIIEMIKGLIAKGYAYESEGDVYFSVEKFSEYGKLSKRKTEELIAGARIEPGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+S EPGWESPWG GRPGWHIECSAM+ YLG+ DIHGGGLDLIFPH Sbjct: 174 KKNPLDFALWKKSKEGEPGWESPWGIGRPGWHIECSAMAMKYLGRTMDIHGGGLDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + W+HNGF+ + KMSKS GNF TI ++L + + + Sbjct: 234 HENEIAQSEAYTG-KSFVRYWLHNGFVMVNKEKMSKSLGNFFTIKDIL-------KEFSS 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 V+RL +L THYR PIDF+ +RL +AE + SK II+ Sbjct: 286 DVLRLFLLSTHYRSPIDFSFERLKDAERSFGRLLNFIESKEIIEKLPTFEKNSEIFDVEN 345 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHD------------------LLPIFNAS 388 SA+ +D NT A+ + +L +E+ D + I + Sbjct: 346 YKLQFESAMDDDFNTARALGVIFELVKEANLIKDKAIKENKISNKEKETILKAIGIVESY 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LG ++ K+ I+ L+ R L K K F AD IR L+ G ILED + Sbjct: 406 LKLLGFKLEKKKQEGIEDELIKLLIDVRSELRKRKAFDLADKIRDGLKDLGIILEDLPSG 465 Query: 449 DNGQR 453 +R Sbjct: 466 TIYKR 470 >gi|237756267|ref|ZP_04584825.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691568|gb|EEP60618.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 487 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 179/508 (35%), Positives = 251/508 (49%), Gaps = 73/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL K +F I P +++Y CG TVYD+ H+G+ R +IVFD++ R LRY Sbjct: 1 MSLKIYNTLTGKKEDFAPIKPGEVKIYTCGVTVYDYNHVGHGRSLIVFDMIRRYLRYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN TD+DDKII RA+ E S+I+ K +++ D + + Sbjct: 61 N--VIFVRNFTDVDDKIINRAKNECLP------FSVISDKFIKEYFDDAEKFRIEPADVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HIP +I IQ ++ G+AYEA+ ++ F YG S+R IDE G R+ Sbjct: 113 PRVTTHIPDIINFIQKLVDAGYAYEADGDVYFSVRKFKEYGKLSKRSIDELLAGARIEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP WESPWG+GRPGWH EC AM +LG+ DIHGGGLDL F Sbjct: 173 EKKKDPLDFALWKSAKAGEPYWESPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + A WIHNG + + G+KMSKS GN+IT+ E+ + Sbjct: 233 PHHENEIAQAEALTG-KPFARYWIHNGLVTVNGQKMSKSLGNYITLKEIYS-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------- 349 ++RL +L HYR P+DF+ ++ E + + +++ Sbjct: 285 EPDILRLLVLSVHYRSPLDFSWDKMEETKKAYERLKNAIEEAEVLNKLPIEENFEGDLYN 344 Query: 350 -------AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASA-- 389 SA+ +D NT A+ +L L RE D L + +A Sbjct: 345 AVQKAQSGFYSAMSDDFNTPEALASLFGLVREMNILRDKAIKHGGISKKALESYKEAAKT 404 Query: 390 ------HILGIEVCKE------------HLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 I G+ + I+ L++ R K K+F+ AD I Sbjct: 405 LHDIGRDIFGLFDSLQPCVKQEEIKAKEKEESINEDLIQVLIEAREKARKDKQFAIADLI 464 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R +L KG ILED T+WK+ Sbjct: 465 RDKLAEKGIILEDT------PFGTKWKK 486 >gi|227891227|ref|ZP_04009032.1| cysteinyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] gi|227867101|gb|EEJ74522.1| cysteinyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] Length = 470 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 171/491 (34%), Positives = 259/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + +F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKEKFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ +++ +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKASQE------MNLSVKEITEKFINAFYEDTSALNVKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID+ + G Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 185 KKN----PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 ++ P DF LWK++ E W+SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKAKQGEISWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQSEAKTG-KKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KEVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 + ++ + + +D N + I ++++A++ + L+ + Sbjct: 346 VEVNFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IE+L+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFSEEK--ELLGDTIEQLIQERNEARKNKNFKRSDEIRDLLKEQGIILEDT--- 460 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 461 ---AQGTRWKR 468 >gi|301299859|ref|ZP_07206093.1| cysteine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852530|gb|EFK80180.1| cysteine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 470 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 171/491 (34%), Positives = 260/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + +F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKEKFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ +++ +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKASQE------MNLSVKEITEKFINAFYEDTSALNVKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID+ + G Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 185 KKN----PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 ++ P DF LWK++ E W+SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKAKQGEISWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQSEAKTG-KKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KEVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 + ++ + + +D N + I ++++A++ ++L+ + Sbjct: 346 VEVNFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IE+L+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFSEEK--ELLDDTIEQLIQERNEARKNKNFKRSDEIRDLLKEQGIILEDT--- 460 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 461 ---AQGTRWKR 468 >gi|300864454|ref|ZP_07109324.1| Cysteinyl-tRNA synthetase [Oscillatoria sp. PCC 6506] gi|300337549|emb|CBN54472.1| Cysteinyl-tRNA synthetase [Oscillatoria sp. PCC 6506] Length = 483 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 178/499 (35%), Positives = 249/499 (49%), Gaps = 65/499 (13%) Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC 65 K+YN+L R++ + I+P +RMY CG TVYD H+G+AR I +DV+ R L + E Sbjct: 4 KLYNSLTRRVEPLETIEPGKVRMYCCGVTVYDNCHLGHARSYIAWDVVRRYLTWRGYE-- 61 Query: 66 VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRA 125 V YV+N TDIDDKI+ RAR+E ++ + + TQ + +D RL L PRA Sbjct: 62 VRYVQNFTDIDDKILNRARKE------GSSMEEVAERYTQTYFEDMKRLNVLEADEYPRA 115 Query: 126 TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR------V 179 T+ + + LI + G+AY + ++ + YG S RK DE + G Sbjct: 116 THTMDGIKRLIHELESKGYAYASGGDVYYKVRQFSEYGKLSGRKFDEMQAGASGRVESED 175 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E KK+P DF LWK + EP W+SPWG GRPGWHIECSAM G DIHGGG D Sbjct: 176 AEAQKKKDPFDFALWKGAKSGEPAWDSPWGSGRPGWHIECSAMVRQSFGDRIDIHGGGSD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS + A W+HNG + + G KMSKS GNFITI ELL+ Sbjct: 236 LIFPHHENEIAQSEAVTG-QPLATYWLHNGMVKVNGEKMSKSLGNFITIRELLD------ 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------------TSTSK 344 + V+RL +L HYR+PIDFT + A+ + + + Sbjct: 289 KPTDPMVVRLFVLTAHYRKPIDFTDDAIASAQNGWNTINEGFLFGHEYGSQFGWKLALED 348 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PIFNA 387 SA+ +D NT +A+ + +LA+E ++ ++L + Sbjct: 349 KEAVQQFQSAMDDDFNTPNALAVVFELAKELRRDRNILIHGGKIETPGEVIQQKWHTLVS 408 Query: 388 SAHILGI-------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 H+LG+ + IE L+Q+RL K K F+ D IR +L+ +G Sbjct: 409 LLHVLGLTNLVPASATLSADQSGLTDKDIEILIQQRLAARKAKNFAEGDRIRNELKDRGI 468 Query: 441 ILEDYKNPDNGQRMTRWKQ 459 L D K+ T W + Sbjct: 469 TLIDQKDGT-----TIWHR 482 >gi|170760749|ref|YP_001788843.1| cysteinyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree] gi|229558627|sp|B1KTA5|SYC_CLOBM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169407738|gb|ACA56149.1| cysteine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree] Length = 465 Score = 557 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 258/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFVTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G+R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGSRINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKNQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDDLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|126668153|ref|ZP_01739115.1| cysteinyl-tRNA synthetase [Marinobacter sp. ELB17] gi|126627423|gb|EAZ98058.1| cysteinyl-tRNA synthetase [Marinobacter sp. ELB17] Length = 464 Score = 557 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 184/484 (38%), Positives = 266/484 (54%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL +K +F+ I+P + +YVCG TVYD+ H+G+AR ++ FDV+ R LR+ + Sbjct: 2 IRIYNTLSQKKEQFKPIEPGKVGLYVCGMTVYDYCHLGHARVLVAFDVITRYLRHSGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKI+ RA + + + +T + +D RL L+P +PR Sbjct: 61 -VNYVRNITDIDDKILRRADEN------GEVYTCLTERMIAAMHEDEARLGVLSPNAEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +I+ +I GHAY A+ ++ F SS +YG S++K+++ G RV + Sbjct: 114 ATAFISDMIAMIETLIAGGHAYAADNGDVYFLVSSFADYGKLSKKKLEDLLAGARVDVEQ 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++PADF LWK + P E W SPWG GRPGWHIECSAM++H LG FDIHGGG DL+FP Sbjct: 174 AKRSPADFALWKAAKPDEVFWPSPWGNGRPGWHIECSAMANHCLGDTFDIHGGGPDLLFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA N W+H G + + KMSKS GNF TI E++ET +P Sbjct: 234 HHENEIAQSECATG-HTFVNTWMHAGAIRVNKEKMSKSLGNFFTIREIMET-------YP 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAVLS 353 A V+R ++ +HYR +D++ L E+ L+K + ++ D + Sbjct: 286 AEVVRYFLVSSHYRSQVDYSEDNLIESGRSLTKLYNALRGVTPLASDAVARTAHDTLFVK 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK---------NHDLLPIFNASAHILGIEVCKEHL--- 401 + +D N A+ LH LA E + + +LG+ L Sbjct: 346 RMDDDFNCAGAMATLHALAGEMNQQRRDGDEQAAAASATVLVRLGSVLGLLQQDPELFFQ 405 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 N+ + IE ++Q R K + F+ AD IR +L ++G IL+D + T Sbjct: 406 SDSGQGNELSAGQIETMIQSRADARKTRDFAGADQIRDELLARGVILDDSR------EGT 459 Query: 456 RWKQ 459 W++ Sbjct: 460 SWRR 463 >gi|77165712|ref|YP_344237.1| cysteine--tRNA ligase [Nitrosococcus oceani ATCC 19707] gi|254433143|ref|ZP_05046651.1| cysteinyl-tRNA synthetase [Nitrosococcus oceani AFC27] gi|109894913|sp|Q3J8Y9|SYC_NITOC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|76884026|gb|ABA58707.1| cysteinyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707] gi|207089476|gb|EDZ66747.1| cysteinyl-tRNA synthetase [Nitrosococcus oceani AFC27] Length = 485 Score = 557 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 185/505 (36%), Positives = 270/505 (53%), Gaps = 72/505 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ EF I+ +RMYVCG TVYD H+G+AR M+VFD++ R LR E Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++I +T++ Q +D L L P +PR Sbjct: 61 -VIYVRNITDIDDKIIHRANER------GESIHTLTARYIQALHEDEASLQILPPDREPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT + ++ +++ ++ G+AY+ N +I +D S YG+ S R +++ + G RV Sbjct: 114 ATESMEAILAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + EP WESPWG GRPGWHIECSAMS LG FDIHGGG DL FP Sbjct: 174 AKTDPLDFVLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + N W+HNGF+ L KMSKS GNF T+ E+LE + Sbjct: 234 HHENEIAQSEAATGGK-FVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLE-------HYH 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP---- 349 V+R +L +HYR P+++T Q+L A+ +++ ++++G+ Sbjct: 286 PEVLRYFILSSHYRSPLNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDG 345 Query: 350 ------AVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFNASAHILGI 394 A+ +D NT A+ L+++ A ++ K L + + ILG+ Sbjct: 346 GDPFVLRFREAMDDDFNTPEALALLNEVRHALNRAREAGDTEKGQSLAVLLRSLGGILGL 405 Query: 395 EV--CKEHLNKNISIA------------------IEKLVQERLILLKMKKFSSADYIRKQ 434 ++ L + +A IE+LV +R + K K ++ AD IR Sbjct: 406 LAHEPEQFLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGI 465 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQ 459 L+ +G LED T W++ Sbjct: 466 LKDQGITLEDTAA------GTLWRR 484 >gi|296113612|ref|YP_003627550.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis RH4] gi|295921307|gb|ADG61658.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis RH4] gi|326559609|gb|EGE10023.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 7169] gi|326565528|gb|EGE15699.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 12P80B1] gi|326567711|gb|EGE17817.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis BC1] gi|326568652|gb|EGE18723.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis BC7] gi|326568779|gb|EGE18849.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis BC8] gi|326575029|gb|EGE24958.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis O35E] Length = 480 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 180/494 (36%), Positives = 257/494 (52%), Gaps = 58/494 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++Y+TL F+ I I +YVCG TVYD+ H+G+AR M+ FDV+ R LR Sbjct: 8 QSQLQLYDTLSASKRPFKPIHAGQIGIYVCGMTVYDYCHMGHARVMVGFDVIVRWLRAIG 67 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII+RA + I+ +T + +D L C +P Sbjct: 68 YQ--VNYVRNITDIDDKIIQRA------YDNGETITELTDRFITAMHQDEQFLGCQSPNI 119 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 +PRAT HI M +LI ++ AY+ + ++ + PNYG S+R +D+ + G R Sbjct: 120 EPRATEHIENMQHLIDVLLTKNLAYQGSGGDVYYAIEKFPNYGKLSKRHVDDMQAGASER 179 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG+ FDIHGGG Sbjct: 180 VSTAEDKRHPFDFVLWKTAKPSEPHWQSPWGLGRPGWHIECSAMSTCCLGETFDIHGGGH 239 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI E+++ Sbjct: 240 DLQFPHHENEIAQSEGATG-KTYANHWMHMGFINIDGEKMSKSLGNFFTIREVVD----- 293 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------K 344 + IR +L +HYR P++F+ L E+ LS+ Q+ S + Sbjct: 294 --KFHPETIRFFLLSSHYRSPVNFSDTALKESHTALSRIYQSLKSAENFGVISIMPNAWE 351 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGI- 394 A A+ +D NT A+ L + E + A +L I Sbjct: 352 SEAGQAFAKAMNDDFNTPKAVSVLFSVVTEINRAMKAGEYQKATQEASTLKTLASVLNIA 411 Query: 395 -----EVCKEHL----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 E + ++ + I + +R K F+ AD IR +L +G LED Sbjct: 412 QSSPHEFLQANIGNKPDGLSDAEIANKIAQRQQAKAQKNFAKADAIRDELNRQGIELED- 470 Query: 446 KNPDNGQRMTRWKQ 459 G+ T W++ Sbjct: 471 -----GRMGTTWRR 479 >gi|317495866|ref|ZP_07954229.1| cysteinyl-tRNA synthetase [Gemella moribillum M424] gi|316914043|gb|EFV35526.1| cysteinyl-tRNA synthetase [Gemella moribillum M424] Length = 465 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 180/487 (36%), Positives = 261/487 (53%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + +RMYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVRMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E + S +T K F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEE------GISTSELTDKYIAAFFKDYDALGCKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I +I G AYE+N ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIIDFIAKLIEEGFAYESNGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W SP+G GRPGWHIECS M+ LG DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWASPFGEGRPGWHIECSVMAKETLGDTIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHA-PFSNYWMHNAFINIDNVKMSKSLGNFRLVKDIIS-------EIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------IDPA---- 350 V+RL ML HYR PI++T++ + A+ K + + +D Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELAKTNFEKLKTSYQNLEFRLNNEMTVEKLDDEVVAL 345 Query: 351 -------VLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNASAH----IL 392 + +D NT +A+ + +++ R + N + L + A+ IL Sbjct: 346 ASSELEKFEEYMQDDFNTANALSSWYEVVRITNSYTAQNEVNKETLELLKAAFDTYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V + N IEKL++ER K + F+ AD IR L+ +G ILED K Sbjct: 406 GINVKDD--NSLEDSHIEKLIEERENARKNRDFALADKIRDDLKEQGIILEDTK------ 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKK 464 >gi|148657145|ref|YP_001277350.1| cysteinyl-tRNA synthetase [Roseiflexus sp. RS-1] gi|148569255|gb|ABQ91400.1| cysteinyl-tRNA synthetase [Roseiflexus sp. RS-1] Length = 478 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 178/493 (36%), Positives = 249/493 (50%), Gaps = 59/493 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYNTL R + F+ ++P ++MYVCG TVYD AHIG+A IVFDV+ R L Y Sbjct: 1 MSIRIYNTLTRTLEPFETLEPGVVKMYVCGVTVYDRAHIGHAMSAIVFDVVRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V N TD+DDKII RAR+ I + +F++D L Sbjct: 61 --AVQHVVNFTDVDDKIINRARE------IGRDPKELAESYIAEFLEDLEALNVKRAHIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++ I +I GHAY + ++ F +++P+YG SRR +D+ G R+ Sbjct: 113 PRATETMPEIQQFITRLIETGHAYVVDGDVYFRIATVPDYGKLSRRSLDDMIAGNRISVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAM+ +LG+ DIHGGG DLIF Sbjct: 173 ERKENPADFALWKAAKPGEPFWDSPWGPGRPGWHIECSAMNLAHLGEQIDIHGGGADLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG---------RKMSKSNGNFITINELLE 293 PHHENEIAQ+ + A W+HNG L ++ KMSKS GN +TI E L Sbjct: 233 PHHENEIAQTESLTG-KPFARYWMHNGMLQIQTRLADGTYKLEKMSKSLGNVVTIREFLA 291 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------- 340 + V+RL +L + YR P+ F + + E L + Sbjct: 292 -------QYHPDVLRLTVLSSSYRSPLAFGEEIAADQERKLVRLRSALEPPIGTIEAGLA 344 Query: 341 ----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFN 386 + ++A+ +D NT A+ AL L R D F Sbjct: 345 VDVLLAAARTTRERFIAAMDDDFNTAGALAALFDLVRAINTARDAGVGGAPFAEAQATFR 404 Query: 387 ASAHILGI-EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ ++ + + + I+ L++ R L K K+F+ AD +R +L G LED Sbjct: 405 ELTDVLGLTLTPQQPIIQQAAPFIDLLIEVRSELRKAKQFALADMVRNRLADLGITLEDT 464 Query: 446 KNPDNGQRMTRWK 458 + TRWK Sbjct: 465 ------PQGTRWK 471 >gi|149183935|ref|ZP_01862320.1| cysteinyl-tRNA synthetase [Bacillus sp. SG-1] gi|148848358|gb|EDL62623.1| cysteinyl-tRNA synthetase [Bacillus sp. SG-1] Length = 465 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 166/486 (34%), Positives = 258/486 (53%), Gaps = 51/486 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKI+NTL RK EF+ ++ ++MYVCGPTVY++ HIGNARP IVFD ++R Y Sbjct: 1 MTIKIFNTLTRKKEEFKPLEEGKVKMYVCGPTVYNYIHIGNARPAIVFDTVHRYFEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I+ A + + + + I + + + +DT L C Sbjct: 61 D--VNFVSNFTDVDDKLIKAANE------LGEDVPAIAERFIEAYHEDTEALGCQRADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + +I I+ +I G+AYE+ ++ + T YG S + ID+ K+G R+ Sbjct: 113 PRVTESMDIIIDFIEALIDKGYAYESQGDVYYRTRKFEGYGKLSHQSIDDLKVGARIEAG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + E WESPWG+GRPGWHIECSAM+ YLG+ DIH GG DL F Sbjct: 173 DKKEDPLDFVLWKAAKEGEIFWESPWGQGRPGWHIECSAMAKKYLGETIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + + A W+HNG++N++ KMSKS GNF+ +++++ + Sbjct: 233 PHHENEIAQSEALN-EKPFARYWMHNGYINIDNEKMSKSLGNFVLVHDII-------KEQ 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 V+R ML HYR PI++ ++ L A+ L + + + Sbjct: 285 DPQVLRFFMLSVHYRHPINYNLELLENAKSGLDRLKTSYENLKHRREVSAELTDNNEEWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNA-SAHILG 393 + + + +D NT + I L +L+R E + ++ F+ Sbjct: 345 EKIASLKNQFIEEMDDDFNTANGISVLFELSRQANYYLMEKNTSITVIDAFSQHFKEFFE 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + K + + IE+++ +R+ K + F AD +R +L++ ILED + Sbjct: 405 VLGLKLEEAELLDEEIEEMINQRIQARKDRNFQLADELRDKLKAMNIILEDT------AQ 458 Query: 454 MTRWKQ 459 TRWK+ Sbjct: 459 GTRWKR 464 >gi|54308291|ref|YP_129311.1| cysteinyl-tRNA synthetase [Photobacterium profundum SS9] gi|61216519|sp|Q6LT67|SYC1_PHOPR RecName: Full=Cysteinyl-tRNA synthetase 1; AltName: Full=Cysteine--tRNA ligase 1; Short=CysRS 1 gi|46912719|emb|CAG19509.1| putative cysteinyl-tRNA synthetase [Photobacterium profundum SS9] Length = 464 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 184/485 (37%), Positives = 259/485 (53%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L ++ EF+ I P I MYVCG T+YD HIG+ R + FDV+ R LRY + Sbjct: 2 LKIYNSLTKQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYSGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + ++ +T + + KD L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GESCESLTERLIGEMHKDFDALGMKRPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I ++I L + +I G AY A N +++F+ S YG SR+ +D+ + G RV Sbjct: 114 ATEFIAEIIILCERLIERGFAYVASNGDVMFEVSKFEEYGRLSRQDLDQLQAGARVDIDM 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL FP Sbjct: 174 AKRSPLDFVLWKMSKPGEPTWESPWGAGRPGWHIECSAMNSAILGDHFDIHGGGSDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N W+H+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCATG-SQYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------HYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------VLSA 354 A +R ++ HYR ++++ L +A L + + + A ++ Sbjct: 286 AESVRYFLMSGHYRSQLNYSEDNLKQARSALERLYTSLRGLDLTAQAEGGEEFVTRFTAS 345 Query: 355 LYNDLNTVSAIQALHKLARESTK-------------NHDLLPIFNASAHILGIE------ 395 + +D NT A L +ARE + L A ILG+ Sbjct: 346 MNDDFNTPEAYSVLFDMAREINRLKADETIANNIVQASALGARLRELADILGLLSQDPEA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + ++ IE LVQ+RL K +++AD R +L + ILED G + T Sbjct: 406 FLQGGAGQDDVAEIETLVQQRLDARAAKDWAAADAARDKLLAMKIILED------GPQGT 459 Query: 456 RWKQK 460 W++K Sbjct: 460 TWRRK 464 >gi|319941120|ref|ZP_08015456.1| cysteinyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] gi|319805477|gb|EFW02279.1| cysteinyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] Length = 468 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 188/481 (39%), Positives = 260/481 (54%), Gaps = 41/481 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IY+TL R+ F++++P +RMYVCG TVYD+ HIG+ R + FDV+ R L + Sbjct: 2 LSIYSTLTREQRPFESLEPGRVRMYVCGVTVYDYCHIGHGRTFVAFDVVRRWLEASGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKII RA + +T + + +D L CLAPT +PR Sbjct: 61 -VTFVRNITDVDDKIIRRAAER------GVTTDELTDEFARAMQEDMLALGCLAPTFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ LI + G AY A+ ++ + PNYG S + ID+ + G RV E+ Sbjct: 114 ATQYIPQMLNLIGKLEEKGFAYHAADGDVDYAVRKFPNYGRLSGKSIDDLQSGARVQERE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+S WG GRPGWHIECSAM+ LG+ DIHGGG DL+FP Sbjct: 174 GKHDPLDFVLWKSAKPGEPQWDSKWGCGRPGWHIECSAMAMDLLGETIDIHGGGPDLVFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNL-----EGRKMSKSNGNFITINELL-ETKKF 297 HHENEIAQS A + A W+H+G L + + KMSKS GNF TI + L ET Sbjct: 234 HHENEIAQSEAATG-HQFARTWMHSGPLRVRSADGKEEKMSKSLGNFWTIRDALKETNAA 292 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------- 350 G A V+R +L + YR PI F+ + EA L + + A Sbjct: 293 YGEGCGAEVLRFFLLRSQYRSPITFSSVLIEEAHKALVRLYTALKGRAADRAALDWNEPF 352 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----FNASAHILGIEVCK---- 398 +A+ +D NT A+ L +LA E + + +ILG+E K Sbjct: 353 AARFKAAMDDDFNTALAVSVLFELATEINRTGSPALVRQLLGLGRILNILGMEPEKFLQG 412 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L++ER + K K F+ AD IRK L ++G L+D G T W+ Sbjct: 413 GAEASDDASRIEGLIEERALAKKAKNFARADEIRKSLLAEGIELQD------GAAGTTWR 466 Query: 459 Q 459 + Sbjct: 467 R 467 >gi|289432010|ref|YP_003461883.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. GT] gi|288945730|gb|ADC73427.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. GT] Length = 485 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 175/477 (36%), Positives = 241/477 (50%), Gaps = 42/477 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ +F ++ ++MYVCG T HIG+A I FDV+ R L Y Sbjct: 1 MKIYNTLSGKLEKFVPLENGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLTYKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII +A + S + +N F+ L + PR Sbjct: 59 RVKYIQNFTDIDDKIIAKANAQ------GIEPSTLAERNIGVFLDAMAALNITPADYYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++I ++ +I G+AY + + YG S R +++ G RV Sbjct: 113 ATQEVPKIIEMVSGLIEKGYAYAVGGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEIDEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 173 KEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + A Sbjct: 233 HENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALSR-------YSA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------PAVL 352 +R+ +L + YR P+ ++ + L AE + QT+ K Sbjct: 286 DALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARKDNPQFKETAVDTKAYRERFT 345 Query: 353 SALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFNASAHILGIE--VCKEHLNK 403 + ND NT +A+ + L+RE K+ D +F A ILG+ V + Sbjct: 346 QYMDNDFNTSAALATIFDLSRELNRIEGEAGKSTDGQKLFKELADILGLSLIVAESKTGT 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ IE L++ R L K++ AD IR L++ G +LED T WK K Sbjct: 406 DVAPFIELLIELRKDLRVAKQYQLADKIRTSLDTAGILLEDS------AGGTVWKVK 456 >gi|94265990|ref|ZP_01289713.1| Cysteine--tRNA ligase [delta proteobacterium MLMS-1] gi|93453456|gb|EAT03872.1| Cysteine--tRNA ligase [delta proteobacterium MLMS-1] Length = 494 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 185/509 (36%), Positives = 263/509 (51%), Gaps = 73/509 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I I+NT + F + +++RMYVCG TVYD+ HIG+AR ++VFD+LYR LR+ Sbjct: 1 MPILIHNTKTNRKEPFTPLTDNHVRMYVCGITVYDYCHIGHARSVLVFDMLYRYLRHRRY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+VRN TDIDDKII+RA ++ + ++ + Q F +D L PT + Sbjct: 61 D--VTFVRNFTDIDDKIIKRAAEQQT------SCQELSQRFIQAFHEDMAALGTEPPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT H+P+MI LI+ +I G AY A ++ F + YG S R +DE + G R+ Sbjct: 113 PKATEHLPEMIALIEELIAKGLAYPAGGDVYFRVRNFTEYGKLSHRALDEMRSGARIAVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK S P EP WESPWG GRPGWHIECSAM YLG+ FDIHGGG DL+F Sbjct: 173 ELKEDPLDFVLWKGSKPEEPAWESPWGPGRPGWHIECSAMGRKYLGETFDIHGGGKDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + AN WIH+GF+ ++ KM+KS GNF+TI ++L + + Sbjct: 233 PHHENEIAQSEGATG-KPFANFWIHHGFVTIKDEKMAKSLGNFLTIRDVL-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 PA V+RL + THYR P+D++ + +AE LS+ + G Sbjct: 285 PAEVLRLLLFSTHYRNPVDYSEAAMADAETALSRLYAALAAVGKLPAGGAPEATSVITAK 344 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--------------- 384 ++ A+ D N+ A+ + K LP Sbjct: 345 DRQKLDNLESDFHQAMDIDFNSAKALGRFFDTVKIINKVRQALPATPATRDLELLRDSAA 404 Query: 385 -FNASAHILGIEVC---------KEHLNKNISI---AIEKLVQERLILLKMKKFSSADYI 431 I G+ +E L + I IEKL+ +R + ++ AD I Sbjct: 405 KLRELGGIFGLLQEDPAAYLARRQERLLAGLDITPGEIEKLLAQRQTARQNGDWAEADRI 464 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWKQK 460 R L +K ++D G T W+ + Sbjct: 465 RDLLAAKKIAIKD------GPDGTSWEVQ 487 >gi|301051827|ref|YP_003790038.1| cysteinyl-tRNA synthetase [Bacillus anthracis CI] gi|300373996|gb|ADK02900.1| cysteinyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI] Length = 465 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 171/489 (34%), Positives = 249/489 (50%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFTPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +IR ML HYR PI+F+ + L L + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 ADLEKFQTAFEEAMNDDFNTANAITELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELAQEELLDEEIEELI---QKRIEARKNRDFALSDQIRDDLKDRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|225848506|ref|YP_002728669.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644318|gb|ACN99368.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] Length = 487 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 177/508 (34%), Positives = 251/508 (49%), Gaps = 73/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL K +F I P +++Y CG TVYD+ H+G+ R +IVFD++ R LRY Sbjct: 1 MSLKIYNTLTGKKEDFAPIKPPQVKIYTCGVTVYDYNHVGHGRSLIVFDMIRRYLRYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN TD+DDKII RA+ E ++I+ K +++ D + + Sbjct: 61 N--VIFVRNFTDVDDKIINRAKNECVP------FTVISDKYIKEYFDDAEKFRIEPADIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HIP +I IQ +I G+AYE + ++ F +YG S+R IDE G R+ Sbjct: 113 PRVTTHIPDIIKFIQELIDKGYAYEVDGDVYFSVRKFKDYGKLSKRSIDELLAGARIEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP WESPWG+GRPGWH EC AM +LG+ DIHGGGLDL F Sbjct: 173 EKKKDPLDFALWKSAKAGEPYWESPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + A WIHNG + + G+KMSKS GN++T+ E+ + Sbjct: 233 PHHENEIAQAESLTG-KPFARYWIHNGLVTVNGQKMSKSLGNYVTLKEIYS-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------- 349 ++RL +L HYR P+DF+ ++ E + + I+ Sbjct: 285 EPDILRLLVLSVHYRSPLDFSWDKMEETKKAYERLKNAIQEYEILQKLPTDENFEEDLYT 344 Query: 350 -------AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASA-- 389 SA+ +D NT A+ +L L R+ D L + +A Sbjct: 345 EIQKAQSGFYSAMSDDFNTPEALASLFGLVRQMNILKDKAIKQGGISKKALQSYKEAADT 404 Query: 390 ------HILGIEV------------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 I G+ ++ K I L++ R K K+FS AD I Sbjct: 405 LHNICRDIFGLFDSLQPCVKTEEIKVEKQEEKLDEDLINILIEVRDKARKEKQFSIADTI 464 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R +L KG ++ED T+WK+ Sbjct: 465 RDKLAEKGIVIEDT------PFGTKWKK 486 >gi|326560050|gb|EGE10445.1| cysteinyl-tRNA synthetase [Moraxella catarrhalis 46P47B1] Length = 480 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 180/494 (36%), Positives = 257/494 (52%), Gaps = 58/494 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++++Y+TL F+ I I +YVCG TVYD+ H+G+AR M+ FDV+ R LR Sbjct: 8 QSQLQLYDTLSASKRPFKPIHAGQIGIYVCGMTVYDYCHMGHARVMVGFDVIVRWLRAIG 67 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRNITDIDDKII+RA + I+ +T + +D L C +P Sbjct: 68 YQ--VNYVRNITDIDDKIIQRA------YDNGETITELTDRFITAMHQDEQFLGCQSPNI 119 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--R 178 +PRAT HI M +LI ++ AY+ + ++ + PNYG S+R +D+ + G R Sbjct: 120 EPRATEHIENMQHLIDVLLTKNLAYQGSGGDVYYAIEKFPNYGKLSKRHVDDMQAGASER 179 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 V K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS+ LG+ FDIHGGG Sbjct: 180 VSTAEDKRHPFDFVLWKTAKPSEPHWQSPWGLGRPGWHIECSAMSTCCLGETFDIHGGGH 239 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + AN W+H GF+N++G KMSKS GNF TI E+++ Sbjct: 240 DLQFPHHENEIAQSEGATG-KTYANHWMHMGFINIDGEKMSKSLGNFFTIREVMD----- 293 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------K 344 + IR +L +HYR P++F+ L E+ LS+ Q+ S + Sbjct: 294 --KFHPETIRFFLLSSHYRSPVNFSDTALKESHTALSRIYQSLKSAENFGVISIMPNAWE 351 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL---------LPIFNASAHILGI- 394 A A+ +D NT A+ L + E + A +L I Sbjct: 352 SEAGQAFAKAMNDDFNTPKAVSVLFSVVTEINRAMKAGEYQKATQEASTLKTLASVLNIA 411 Query: 395 -----EVCKEHL----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 E + ++ + I + +R K F+ AD IR +L +G LED Sbjct: 412 QSSPHEFLQANIGNKPDGLSDAEIANKIAQRQQAKAQKNFAKADAIRDELNRQGIELED- 470 Query: 446 KNPDNGQRMTRWKQ 459 G+ T W++ Sbjct: 471 -----GRMGTTWRR 479 >gi|322374189|ref|ZP_08048722.1| cysteine--tRNA ligase [Streptococcus sp. C150] gi|321276894|gb|EFX53966.1| cysteine--tRNA ligase [Streptococcus sp. C150] Length = 447 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 252/468 (53%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMARSLRDFVPLTENVVNMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------AGISTKELSDKFIAAFMEDTAQLGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 N++ ++I + ++ G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSTLVDKGFAYVSEGDVYFRVAKSKNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TARKENPLDFALWKAAKEGEISWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AE+ L T + G +D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTGQVDQAELQTYLDAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + + L +A+ H + F + GI +E L+++ Sbjct: 346 QEAMDDDFNTANGVTVLFDMAKWINSGHYDQTVKDAFEKVLQVFGIVFKEEVLDED---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|308185969|ref|YP_003930100.1| Cysteinyl-tRNA synthetase [Pantoea vagans C9-1] gi|308056479|gb|ADO08651.1| Cysteinyl-tRNA synthetase [Pantoea vagans C9-1] Length = 500 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 184/485 (37%), Positives = 257/485 (52%), Gaps = 48/485 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIYNTL R+ EF+ I I MYVCG TVYD HIG+ R + FDV+ R LRY Sbjct: 38 RSMLKIYNTLSRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRYLG 97 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + + YVRNITDIDDKII+RA + ++I +T++ + D L L P Sbjct: 98 YQ--LNYVRNITDIDDKIIKRANEN------GESIETLTNRMIGEMHNDFAALGILPPDE 149 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT HI ++I L+Q +I HAY A+ +++FD S +YG+ SR+ +++ + G RV Sbjct: 150 EPRATRHIAEIIELVQTLIARNHAYVADNGDVMFDVLSDTDYGALSRQDLEQLQAGARVE 209 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL Sbjct: 210 VADVKRNPMDFVLWKMSKADEPAWSSPWGNGRPGWHIECSAMNCKQLGTHFDIHGGGSDL 269 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQS CA N W+H+G + ++ KMSKS GNF T+ ++L + Sbjct: 270 MFPHHENEIAQSSCAHDG-PYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------Q 321 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAV 351 + A +R ++ HYR +++ L +A L + + + Sbjct: 322 HYDAETVRYFLMSGHYRSQLNYGEDNLNQARAALERLYTALRHTDSSVKAHGGEAFEARF 381 Query: 352 LSALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCKEHL-- 401 SA+ +D NT A L +ARE + H L A++LGI L Sbjct: 382 RSAMDDDFNTPEAYSVLFDMAREVNRLKSEDGASAHGLASKLREMANVLGILQQDPELFL 441 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 N IE V+ R K ++ AD R +L + G I+ED G + + Sbjct: 442 QSGAQVNDEEVAEIEHWVKARADARAAKAWAEADIARDKLNALGVIVED------GPQGS 495 Query: 456 RWKQK 460 W++K Sbjct: 496 SWRRK 500 >gi|312796649|ref|YP_004029571.1| cysteinyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454] gi|312168424|emb|CBW75427.1| Cysteinyl-tRNA synthetase (EC 6.1.1.16) [Burkholderia rhizoxinica HKI 454] Length = 483 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 176/484 (36%), Positives = 253/484 (52%), Gaps = 49/484 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 ++++YNTL R F + +RMYVCG TVYD+ H+G+ R M+VFD++ R LR Sbjct: 20 QLRLYNTLSRNKETFVPLHDGEVRMYVCGMTVYDYCHVGHGRLMVVFDMIQRWLRTLGY- 78 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKII RA + + I +T + +D L P H+P Sbjct: 79 -RVTYVRNITDIDDKIIRRA------VDNGEPIRALTERFIAAMHEDEAALNIQRPDHEP 131 Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 RAT I QM+ +I + +G+AY + ++ + YG S + +++ + G RV + Sbjct: 132 RATQFISQMLGMIDALERNGYAYSGRDGDVNYSVRKFAAYGQLSGKSLEDLRAGERVTQN 191 Query: 183 YHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWKRS EP GW+S WGRGRPGWHIECSAMS LG+ FDIHGGG D Sbjct: 192 DAKEDPLDFVLWKRSKDGEPPDTGWDSKWGRGRPGWHIECSAMSCALLGERFDIHGGGQD 251 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHHENEIAQS + N W+HNGF+N++ KMSKS GNF T+ ++L Sbjct: 252 LQFPHHENEIAQSEGVTG-QPFVNYWLHNGFVNVDNEKMSKSLGNFFTLRDVL------- 303 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------P 349 + + VIR+ +L HYR P++++ L +A L++ + D Sbjct: 304 QRYDGEVIRMLILRAHYRSPLNYSDSHLDDARAALTRLYTALKNVAPDDRALDWSERHAA 363 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIE------------ 395 A +A+ +D NT A AL L + + D L A +LG+ Sbjct: 364 AFRAAMNDDFNTPVAFAALFDLVTDLNRTGDPALARQLKGLAGVLGMLGRDPREYLQARA 423 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + L + I++ ++ R + K ++ AD IR L G +LED T Sbjct: 424 PATDELAPLDAAQIDEQIEARAQAKRAKNYAEADRIRAALLEAGVVLEDKPGGK-----T 478 Query: 456 RWKQ 459 W++ Sbjct: 479 EWRR 482 >gi|150402240|ref|YP_001329534.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C7] gi|166200151|sp|A6VG07|SYC_METM7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|150033270|gb|ABR65383.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C7] Length = 476 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 245/480 (51%), Gaps = 54/480 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ ++ + ++MYVCGPTVYD H+G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRKEEEFKPLNENEVKMYVCGPTVYDHTHLGHGRTYVSFDIIRRYLEHIGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+R++++ + ++ F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRSQEKGKN------PKELSETFVNVFLNDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I I+ +I G AY+ N + F+ NYG S +++ G R+ Sbjct: 114 VTEHIPEIIAFIEKLIEKGFAYKTENGVYFEVKKFENYGKLSNINLEDLISGARIEPSDE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + P EP WESP+G GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNPEDFALWKTAKPGEPKWESPFGEGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNFITI ++ + + Sbjct: 234 HENEIAQSVAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFITIEDI-------SKEYDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDP----- 349 ++R + HYR PID+T + ++ + L K + S GI + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMSHVKNNLEKIYNVIENIRISLEKSEKSGIWNENEFLL 345 Query: 350 ---------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI------------FNAS 388 A+ +D NTV A++++ +++ K L+ F Sbjct: 346 YDILKNSKHNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVKTPSEGLLLKAFDFFKIV 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ KE N ++ L++ R L K + +D IR L+ G+ +ED Sbjct: 406 GEIFGLFENYFKESSESNDEGFVKFLIELRSDLRLQKNYEMSDKIRDGLKELGYQIEDNP 465 >gi|270307505|ref|YP_003329563.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. VS] gi|270153397|gb|ACZ61235.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. VS] Length = 457 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 177/477 (37%), Positives = 242/477 (50%), Gaps = 42/477 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++ ++MYVCG T HIG+A I FDV+ R L Y Sbjct: 1 MKIYNTLSGKLEEFVPLEDGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLSYKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII +A + S + +N F+ L + PR Sbjct: 59 RVKYIQNFTDIDDKIIAKANAQ------GIEPSTLAERNIGVFLDAMAALNITPADYYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++I ++ +I G+AYEA + + YG S R +++ G RV Sbjct: 113 ATQEVPKIIEMVSGLIEKGYAYEAGGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEIDEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 173 KEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQVDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + A Sbjct: 233 HENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALSR-------YSA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------PAVL 352 +R+ +L + YR P+ ++ + L AE + QT+ + Sbjct: 286 DALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARQDNPQSNETNVDVKTYRERFT 345 Query: 353 SALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFNASAHILG--IEVCKEHLNK 403 + ND NT +A+ + L+RE K+ D +F A ILG +++ + Sbjct: 346 QYMDNDFNTSAALATIFDLSRELNRIEAEGGKSTDGQKLFKELADILGLSLKIAEPETGT 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + IE L++ R L K++ AD IR L+S G +LED T WK K Sbjct: 406 DAVPFIELLIELRKDLRLAKQYQLADKIRTSLDSAGILLEDS------AGGTVWKAK 456 >gi|259502662|ref|ZP_05745564.1| cysteine-tRNA ligase [Lactobacillus antri DSM 16041] gi|259169307|gb|EEW53802.1| cysteine-tRNA ligase [Lactobacillus antri DSM 16041] Length = 471 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 170/492 (34%), Positives = 255/492 (51%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LTIYNTLTRRKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K + F++DTT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAHEQ------GITVPQLADKFIRAFMEDTTAVNIEPATKHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +IP++I +Q +I +G+AYE++ ++ + NYG S + ID+ ++G Sbjct: 114 ATENIPEIIAFVQRLIKNGYAYESDGDVYYRARKFANYGQLSGQSIDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG+ DIH GG DL Sbjct: 174 EIGKKEDPMDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGQTLDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A + W+HNGF+ + + KMSKS NFIT++++++T Sbjct: 234 EFPHHENEIAQSEAATG-QPFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHDIIKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 V+R M T YR PI ++ LT+A+ L Sbjct: 290 ----DPQVLRFFMATTQYRRPIQYSEDNLTDAQNNLEHIRTAYDNLTYREQDAEVGVDEV 345 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNAS 388 S + + +D+N + I +++L + + Sbjct: 346 VSQQLADFTARFTAVMDDDINVQNGIAVVYELVKAANTYAQQPVVKQGALQAYKDKLAQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI++ N+ I+ L++ER K K F+ +D IR +L+ +G ILED Sbjct: 406 VSIFGIKLV-ARDNQIDDEQIKALIEERNQARKNKDFARSDQIRDELKQRGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TR+K++ Sbjct: 462 ---PQGTRYKKE 470 >gi|241888786|ref|ZP_04776092.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379] gi|241864462|gb|EER68838.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379] Length = 465 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 182/487 (37%), Positives = 263/487 (54%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + +RMYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVRMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E + S +T K F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEE------GISTSELTEKYITAFFKDYDALGCKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I ++ G AYEA ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIINFIAKLVEEGFAYEAKGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W+SP+G GRPGWHIECS M+ LG DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWDSPFGEGRPGWHIECSVMAKETLGDTIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHV-PFSNYWMHNAFINIDNVKMSKSLGNFRLVKDIIA-------EIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIID------ 348 V+RL ML HYR PI++T++ + A+ K + S +D Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELAKTNFEKIKTSYQNLQFRLNNDMSDEKLDTDVVAL 345 Query: 349 -----PAVLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNASAH----IL 392 + +D NT +A+ + +++ R S N + L + NA+ IL Sbjct: 346 VTEELNKFEEYMQDDFNTANALSSWYEIVRISNSYTAKEAVNKETLELINAAFETYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V ++ N S IE L+ ER K + F+ AD IR L+ +G ILED K Sbjct: 406 GISVKED--NTLDSEHIESLISEREEARKNRDFALADKIRDDLKEQGIILEDTK------ 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKK 464 >gi|218895225|ref|YP_002443636.1| cysteinyl-tRNA synthetase [Bacillus cereus G9842] gi|226735046|sp|B7ISZ9|SYC_BACC2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218541053|gb|ACK93447.1| cysteinyl-tRNA synthetase [Bacillus cereus G9842] Length = 465 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 171/489 (34%), Positives = 250/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I IYNTL R+ EF ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y Sbjct: 1 MTIHIYNTLTRQKEEFVPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + I + + + +D T L C T Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ +I IQ ++ G+AYE+ ++ F T YG S + I + + G R+ Sbjct: 113 PRVTENMDIIIEFIQELVNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL F Sbjct: 173 EKKQDPLDFALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N+ KMSKS GNFI +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 +IR ML HYR PI+F+ + L L + + Sbjct: 285 DPQLIRFFMLSVHYRHPINFSEELLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A A+ +D NT +AI L+ +A + + + Sbjct: 345 VEIEKFQTAFEEAMNDDFNTANAITELYNVANYANQYLLEEHTSKVVIEAYVKQLETLFD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILG+E+ +E L + Q+R+ K + F+ +D IR L+ + ILED Sbjct: 405 ILGLELTQEELLDEEIEELI---QKRIEARKNRDFALSDQIRDDLKGRNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|312869734|ref|ZP_07729881.1| cysteine--tRNA ligase [Lactobacillus oris PB013-T2-3] gi|311094783|gb|EFQ53080.1| cysteine--tRNA ligase [Lactobacillus oris PB013-T2-3] Length = 471 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 172/492 (34%), Positives = 255/492 (51%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LKIYNTLTRQKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K Q F+ DTT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAHEQ------GITVPQLADKFIQAFMADTTAVNIEPATKHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +IP +I +Q +I G+AYE++ ++ + +YG S + ID+ ++G Sbjct: 114 ATENIPDIIAFVQTLIEKGYAYESDGDVYYRARKFAHYGQLSGQSIDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLG+ DIH GG DL Sbjct: 174 EIGKKEDPMDFALWKAAKPGEISWDSPWGQGRPGWHIECSVMSTKYLGQTLDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A + W+HNGF+ + + KMSKS NFIT++++++T Sbjct: 234 EFPHHENEIAQSEAATG-QPFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHDIIKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------- 343 V+R M T YR PI ++ LT+A+ L + Sbjct: 290 ----DPQVLRFFMATTQYRRPIQYSEDNLTDAKNNLEHIQTAYDNLTYRQQDAATGDDAL 345 Query: 344 ----KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNAS 388 +A+ +D+N + I +++L + + + Sbjct: 346 VTQQLADFTARFTTAMDDDINVQNGIAVVYELVKAANTYAQQAAVKQGALQAYKDKLAQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI++ H N I+ L++ER K K F+ +D IR +L+ +G ILED Sbjct: 406 ISIFGIKLV-AHDNHIDDEQIKALIEERNQARKNKDFARSDQIRDELKQQGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TR+K++ Sbjct: 462 ---PQGTRYKKE 470 >gi|229917379|ref|YP_002886025.1| cysteinyl-tRNA synthetase [Exiguobacterium sp. AT1b] gi|259511833|sp|C4KZR7|SYC_EXISA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229468808|gb|ACQ70580.1| cysteinyl-tRNA synthetase [Exiguobacterium sp. AT1b] Length = 465 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 173/487 (35%), Positives = 259/487 (53%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YN+L K F I P + MYVCGPTVY++ H+GNARP I FD + R L Y E Sbjct: 2 IQLYNSLTNKKEPFVPIVPGKVSMYVCGPTVYNYIHVGNARPAIAFDTVRRYLTYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A + + + +T++ + ++ DT L PR Sbjct: 61 -VKYVLNFTDVDDKIIRTANE------LGEDTETLTNRYIEAYLADTGALNVQPADVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++I I+ + G AYE+ ++ F T YG S++ I++ + G+RV Sbjct: 114 VTDTMEEIIEFIRQLETEGFAYESEGDVYFRTKKFETYGKLSQQSIEDLRAGSRVDVGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W+SPWG+GRPGWHIECSAM+ +LG DIH GG DL FPH Sbjct: 174 KEDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMAKKHLGTTIDIHAGGHDLKFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + + AN W+HNGF+N+E KMSKS GNF+ ++E L + Sbjct: 234 HENEIAQSEACNHAK-FANYWLHNGFINIENEKMSKSLGNFLLVHEAL-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------STS 343 V+R ML HYR PI+++ + + +A S+ + Sbjct: 286 MVLRFFMLSVHYRHPINYSRELIEQAANGWSRIKEAYQNIEYRLSVTAGLGEASESMERK 345 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAHIL 392 I + + ++ +D+NT +A+ L LARE+ +L +F+ +L Sbjct: 346 LESIKASFIESMDDDINTANAVTVLFDLAREANIYAKADHVAKATLEQVLSLFDELTGVL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G+ + +E + + I++L+QER + F+ AD IR L+ + LED Sbjct: 406 GLTLAEEK--ELLDAEIDQLIQERNDARAARNFARADEIRDLLKEQNIQLEDT------A 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKR 464 >gi|163793631|ref|ZP_02187606.1| cysteinyl-tRNA synthetase [alpha proteobacterium BAL199] gi|159181433|gb|EDP65948.1| cysteinyl-tRNA synthetase [alpha proteobacterium BAL199] Length = 463 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 216/479 (45%), Positives = 284/479 (59%), Gaps = 42/479 (8%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + ++KI NTL R F+ IDPS++RMYVCGPTVYDFAH+GNARP++VFDVL RLLR Y Sbjct: 4 QPELKITNTLTRAKEAFRPIDPSHVRMYVCGPTVYDFAHVGNARPVVVFDVLVRLLRRLY 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRNITD++DKI RA++ + I +T++ Q+ D L P Sbjct: 64 --PRVTYVRNITDVEDKINARAKEN------GEPIEALTARTAAQYQADMDALGAERPDV 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 QPRAT+HI QMI LI+ +I GHAY A+ ++F S+P+YG SRR D+ G RV Sbjct: 116 QPRATHHIAQMITLIERLIAKGHAYAADGHVLFAVPSMPDYGGLSRRDRDDMIAGARVEV 175 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K++PADF+LWK S+ PGW+SPWGRGRPGWHIECSAMS +LG+ FDIHGGGLDLI Sbjct: 176 APYKQDPADFVLWKPSSDDIPGWDSPWGRGRPGWHIECSAMSWEHLGETFDIHGGGLDLI 235 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS CA AN W+HNGF+ +EG KMSKS GNF T++++L + Sbjct: 236 FPHHENEIAQSRCAFGTHTMANYWMHNGFVTVEGEKMSKSLGNFYTVHDVL-------KE 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID--------PAVLS 353 WP IRL +L +HYR P+DFT L EA+ L + Q + + +++ Sbjct: 289 WPGEAIRLLLLSSHYRAPLDFTSAGLKEAKAQLDRLYQALRNAADVAVEPEAPAGDELMA 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE-------------VCKEH 400 AL +DLN A+ LH+ K D A + +LG Sbjct: 349 ALLDDLNVPLAVARLHEAVGRLNKATDPAERSAAKSALLGGGALLGLLQADPEAWFQGGG 408 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE+L+Q R+ K + F+ AD IR L++ G LED G + T WK+ Sbjct: 409 DDDLDPAEIERLIQARVDARKGRDFAEADRIRDALKANGVELED------GPQGTTWKR 461 >gi|330817521|ref|YP_004361226.1| Cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] gi|327369914|gb|AEA61270.1| Cysteinyl-tRNA synthetase [Burkholderia gladioli BSR3] Length = 464 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 188/483 (38%), Positives = 257/483 (53%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ HIG+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHIGHARMMVVFDIVQRWLRQLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +TS+ +D L P H+ Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIGELTSRFIAAMHEDLDALGVERPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT++IPQM+ +I + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATHYIPQMLGMIAALEANGYAYQAKDGDVNYAVRKFANYGRLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P EP W+S +GRGRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKRAKPEEPADTSWDSKYGRGRPGWHIECSAMGCTLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNTWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----SKGIIDP----- 349 + A V+R + THYR P++++ L +A L++ +DP Sbjct: 288 --KYDAEVVRFFIARTHYRSPLNYSEVHLDDARAALTRLYTALKDVTPDGAPLDPDEPHA 345 Query: 350 -AVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNAS----------AHILGIEV 396 +A+ +D NT A+ L +LA E + D L F A + Sbjct: 346 QRFAAAMNDDFNTALAVSVLFELAGEVNRTRDAALARQFKQLGALLGLLGRDARAFLQQA 405 Query: 397 CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + AIE + ER+ + K ++ AD IR L G LED +T Sbjct: 406 TGAGADALDGEAIEACIAERVAAKQAKNYAEADRIRAALLEAGVALEDKPGG-----LTE 460 Query: 457 WKQ 459 W++ Sbjct: 461 WRR 463 >gi|303244169|ref|ZP_07330507.1| cysteinyl-tRNA synthetase [Methanothermococcus okinawensis IH1] gi|302485554|gb|EFL48480.1| cysteinyl-tRNA synthetase [Methanothermococcus okinawensis IH1] Length = 476 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 186/496 (37%), Positives = 258/496 (52%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL +K EF +ID ++MYVCGPTVYD+AH+G+ R +VFD + R L + Sbjct: 1 MKIYNTLTKKKEEFNSIDEHEVKMYVCGPTVYDYAHLGHGRTYVVFDTIRRYLEHKNY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA +E N + + K + F++D +L PR Sbjct: 59 IVKLVINFTDIDDKIIKRANEE------NIPPTELADKFIKSFLEDMEKLNIKPAYVYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + HI +I I+ +I G+AY A++ I FD +YG S +DE + G R+ Sbjct: 113 VSEHIKDIIRFIEVLIKKGYAYVADDGIYFDVRKFKDYGKLSNINLDEIRTGYRIETNLT 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF LWK + P EP W+SPWG GRP WHIECSAM YLG+ FDIHGGG DLIFPH Sbjct: 173 KRNPEDFALWKFAKPNEPKWDSPWGEGRPAWHIECSAMGIKYLGEQFDIHGGGNDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + WIH GF+ ++ KMSKS GNF+ + +LL+ + Sbjct: 233 HENEIAQSEVYTDKKPWVKYWIHTGFVMMDKEKMSKSLGNFVELKDLLD-------KYDF 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------------- 349 VIRL +L HYR P+D++ + L +A+I L K T + I Sbjct: 286 EVIRLFLLQRHYRSPLDYSEEGLLDAKISLEKLYNTLKNIDAICRNSHVKHKLNEIDIKT 345 Query: 350 ---------AVLSALYNDLNTVSAIQALHKLARESTK--------NHDLL----PIFNAS 388 +A+ +D NT A++ + +++ K N LL F Sbjct: 346 YETIKNAWINFYNAMDDDFNTPEALKYVFEVSSVINKYMNESNNPNKSLLIMTNEFFKMI 405 Query: 389 AHILGIE----VCKEHLNKNIS-IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 I GI K + +KN+ I+ L+ R L + K + AD IR +L++ G LE Sbjct: 406 GEIFGIFHNIINNKNNEDKNMEGHLIDILINIRAKLKEEKNYKLADEIRSELKNIGIQLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + T WK+ Sbjct: 466 DS------PKGTIWKK 475 >gi|169830058|ref|YP_001700216.1| cysteinyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] gi|226735062|sp|B1HNM3|SYC_LYSSC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|168994546|gb|ACA42086.1| Cysteinyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] Length = 466 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 171/489 (34%), Positives = 248/489 (50%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R +Y Sbjct: 1 MSIQIFNSLSRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYFQYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDKII+ A + + + + +T + + +D T L C Sbjct: 61 D--VKFVSNFTDVDDKIIKAANE------LGEEVHELTERFIAAYFEDVTALGCKKADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ +I IQ +I G+AYE+ ++ + T YG S + +D+ K+G R+ Sbjct: 113 PRVTEHMADIIQFIQVLIEKGYAYESAGDVYYRTRKFNGYGKLSHQSVDDLKIGARIEAG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K + DF LWK + P E WESPWG GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 173 EKKDDALDFALWKAAKPGEIFWESPWGNGRPGWHIECSVMAREHLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 233 PHHENEIAQSE-AHNDKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------KQI 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----------------- 345 V+R ML HYR PI+F + A L + + Sbjct: 285 DPQVLRFFMLSVHYRHPINFAKDLVEAASAGLERIRTAYNNVKHRLTTTVSLGDHSDEWL 344 Query: 346 ----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A+ +D NT + I L +LAR + + F Sbjct: 345 NKITEQKAQFEEAMDDDFNTANGISVLFELARIANIYLNETNTCKKVLETFIETFEVLGD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGIE KE + I QER+ K + F+ +D IR L+++G ILED + Sbjct: 405 VLGIEFAKEEELLDEEIEALL--QERVEARKNRDFARSDEIRDHLQAQGIILEDTR---- 458 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 459 --QGTRWKR 465 >gi|320354379|ref|YP_004195718.1| cysteinyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] gi|320122881|gb|ADW18427.1| cysteinyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] Length = 487 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 182/508 (35%), Positives = 257/508 (50%), Gaps = 72/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYNTL R+ Q ++ ++++YVCG T YD+ HIG+AR +VFD++ R LR+ Sbjct: 1 MSIRIYNTLSRRKEILQPLEEGHVKLYVCGITSYDYCHIGHARSALVFDMVVRYLRHRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VT+VRN TDIDDKII RA ++ + + + +F D L L P + Sbjct: 61 K--VTFVRNFTDIDDKIINRANEQ------GIDSASLALRFINEFYTDMDALGTLRPDLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HIP+MI LI+++I G AY A+ ++ F YG S R + + + G RV Sbjct: 113 PKATEHIPEMIGLIEDLIDKGMAYPADGDVYFRVERFVGYGQLSGRGLADMQAGARVEVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK + P EP W SPWG GRPGWHIECSAMS YLG+ FDIHGGG DL+F Sbjct: 173 DKKEHPMDFVLWKAAKPGEPKWPSPWGEGRPGWHIECSAMSRKYLGETFDIHGGGKDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSC A + AN+W+H+GF+ ++ KMSKS GNF+TI ++L + + Sbjct: 233 PHHENEIAQSCGASG-KPFANLWMHHGFVTIKEEKMSKSLGNFLTIRDVL-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 V+RL + T YR P+DFT L +A L + + + Sbjct: 285 EPEVLRLFIFSTQYRNPLDFTETALHDARAGLERMYECLAQVEDLPAEGTEGASVITDKD 344 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTK----------NHDL------LPI 384 A+ ND NT A+ L + K DL Sbjct: 345 RTALASLVDRFHQAMDNDFNTAQALAHLFDTVKLLNKVLRTLPERPAAADLNLLRTTAAE 404 Query: 385 FNASAHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIR 432 F A +LG+ EV + K + I L+ +R K +S++D +R Sbjct: 405 FRELAGVLGLVQRNPAEVVAGNRAKILAGIDLDEETINGLITKRNQARAAKDWSTSDEVR 464 Query: 433 KQLESKGFILEDYKNPDNGQRMTRWKQK 460 L +L+D T W+ K Sbjct: 465 DYLLEHRIVLKDS------PEGTTWEVK 486 >gi|182678882|ref|YP_001833028.1| cysteinyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|229558617|sp|B2IEE1|SYC_BEII9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|182634765|gb|ACB95539.1| cysteinyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 458 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 207/478 (43%), Positives = 294/478 (61%), Gaps = 45/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL R+ F+ IDP+N+R+Y CGPTVYDF HIGN R +IVFD+L+R+LR YG Sbjct: 3 LQLYNTLTRQKDIFEPIDPANVRLYACGPTVYDFLHIGNGRMLIVFDLLFRVLRDLYGAD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI RA + I ++T + T F +D L CL PT +PR Sbjct: 63 HVRYVRNITDVDDKINARAAER------GIDIRVLTDEMTAIFHEDAKALNCLPPTVEPR 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ +MI +I+ ++ +GHAY A ++FD S+P+YG S+R +D+ G RV + Sbjct: 117 ATEHMAEMIAIIEKLVANGHAYIAEGHVLFDVPSMPDYGKLSKRPLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EPGWESPWGRGRPGWH+ECSAMS +LG+VFDIHGGG+DL+FPH Sbjct: 177 KRSPTDFVLWKPAKPEEPGWESPWGRGRPGWHLECSAMSWKHLGEVFDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQ+C A + AN+W+HNG L +EG+KMSKS GNF+TI ++L + WP Sbjct: 237 HENEVAQTCSAFGHDVMANVWMHNGHLQVEGQKMSKSLGNFLTIRDVL-------KDWPG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------AVLSALY 356 +R ML THYR+PID+T+ L E++ L +W + + I+P + AL Sbjct: 290 ETVRFTMLKTHYRQPIDWTLSSLRESQRELDRWYPVARAFDQINPDNIPGIPSSFRDALQ 349 Query: 357 NDLNTVSAIQALHKLARESTKNHDLLPI-----------FNASAHILGIEVCKEHLNKNI 405 +DLNT AI L +L +++ + D + F+ S +E K + Sbjct: 350 DDLNTPEAITILRRLYKDALETTDYAGVHLLLCGKLLGLFDQS-----LEKWKNWKPASF 404 Query: 406 SIA---IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 ++ E L++ER K + +D++R L S G +L+D K+ T W+ K Sbjct: 405 TVENVTFEDLIKEREEARAAKNWPKSDHLRDVLASYGIVLKDNKDGT-----TSWEAK 457 >gi|307154328|ref|YP_003889712.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7822] gi|306984556|gb|ADN16437.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 7822] Length = 480 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 170/501 (33%), Positives = 250/501 (49%), Gaps = 65/501 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R+ FQ I+P +RMY CG TVYD+ H+G+AR +V+DV+ R L++ Sbjct: 1 MTLTIYNTLTRRKEPFQPIEPGKVRMYCCGITVYDYCHLGHARTCVVWDVVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y++N TDIDDKI+ RA++E ++ ++ + + + +D RL Sbjct: 61 Q--VKYIQNFTDIDDKILNRAKKE------GTSMEEVSERFIKAYFEDMDRLHIEKADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + L+ + G+AY A+ ++ + +YG S RK+++ + G Sbjct: 113 PRATHTLDGIKRLVYELEQKGYAYAADGDVYYSVRRFADYGKLSGRKLEDLQAGASGRVE 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 PE KK+P DF LWK + EP WESPWG GRPGWHIECSAM LG+ DIH G Sbjct: 173 LEDPETQKKKDPFDFALWKAAKAGEPSWESPWGEGRPGWHIECSAMVRERLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W+HNG + + G KMSKS GNF TI +LL+ Sbjct: 233 GSDLIFPHHENEIAQSEAATG-QPLARYWMHNGMVKVGGDKMSKSLGNFTTIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 V+RL +L THYR P+DFT + + A + Sbjct: 289 ----KVEPMVVRLFILQTHYRNPVDFTEKAIDAASNGWQTLQEGLLFGHHYGEKLAWDDL 344 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 + + + +D N + L +LA+E K ++L Sbjct: 345 PGATVPELVQKYREIVDDDFNFAGGLAVLFELAKELRKEGNILVHQGKTDTSPEKLKAQW 404 Query: 383 PIFNASAHILGIEVC----KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + +LG+E ++ IE L+++R K K F+ D IR +L++ Sbjct: 405 QTLVELSQVLGLEAIAAQPEQETTGLSDADIEALIEQRAQARKAKNFAEGDRIRDELKAN 464 Query: 439 GFILEDYKNPDNGQRMTRWKQ 459 G L D G +T+W + Sbjct: 465 GITLID-----AGGGVTKWHR 480 >gi|150015023|ref|YP_001307277.1| cysteinyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] gi|187629800|sp|A6LPP1|SYC_CLOB8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|149901488|gb|ABR32321.1| cysteinyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] Length = 466 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 169/486 (34%), Positives = 249/486 (51%), Gaps = 53/486 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL R+ EF I ++MYVCGPTVY+F HIGN R IVFD + R L Y + Sbjct: 1 MRVFNTLTRQKEEFIPIITGEVKMYVCGPTVYNFFHIGNGRTFIVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TDIDDK+I +A E + + K +++ +D L T PR Sbjct: 60 -VRFVQNFTDIDDKMINKANDE------GITVKELGDKYIKEYYQDADSLKIERATVNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I ++ +I G AYE + ++ + T NYG + +D+ ++G R+ Sbjct: 113 ATEYIHDIIKFVEELIEAGFAYEVDGDVYYSTKKFDNYGRLVGQNLDDLQVGARISVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ LG DIH GG+DL FPH Sbjct: 173 KKDPMDFAVWKAQKPGEPAWESPWGPGRPGWHIECSCMAKKLLGDTIDIHAGGMDLRFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN W+H F+N++ +KMSKS NF T E+LE + + Sbjct: 233 HENEIAQSEALTG-KTFANYWLHAAFVNVDNKKMSKSLNNFFTAREVLE-------EYSS 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------------- 350 IR ML HYR I+FT + L A+ + + + + Sbjct: 285 DAIRFLMLSGHYRIQINFTKELLDSAKSSIERLYNCINNLENLKDEVTKKLMDEAEEKYL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARE------STKNHDLLPIFNASAHILG-- 393 + + +D NT AI L L ++ + +L + LG Sbjct: 345 KSLDKYREKFIEKMDDDFNTADAISVLFDLTKDINNNVNINSSSELCEKAESMVRELGNP 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + ++ + K++ I++L+++R K K F+ AD IR L+S+ ILED + Sbjct: 405 LGILQDRIEKDLETEIQELIEKRQQARKNKDFALADKIRDDLKSRNIILEDT------PQ 458 Query: 454 MTRWKQ 459 RWK+ Sbjct: 459 GVRWKK 464 >gi|187776555|ref|ZP_02993028.1| hypothetical protein CLOSPO_00067 [Clostridium sporogenes ATCC 15579] gi|187775214|gb|EDU39016.1| hypothetical protein CLOSPO_00067 [Clostridium sporogenes ATCC 15579] Length = 465 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 174/488 (35%), Positives = 258/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFVTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDSIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I++A +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKKANEE------GITVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G+R+ Sbjct: 113 ATEFMDEIIRFVSDLIEKGYAYEIDGDVYFSTKRFGDYGKLSGQNLEELQLGSRINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|329767862|ref|ZP_08259376.1| cysteinyl-tRNA synthetase [Gemella haemolysans M341] gi|328838650|gb|EGF88249.1| cysteinyl-tRNA synthetase [Gemella haemolysans M341] Length = 465 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 181/487 (37%), Positives = 265/487 (54%), Gaps = 56/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+YNTL ++ + I+ + +RMYVCGPTVY++ HIGNARP+IVFDV+ + L + E Sbjct: 2 IKLYNTLTKQKEILKTIEENKVRMYVCGPTVYNYIHIGNARPIIVFDVVRKYLEHSGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++ N TD+DDKII+ + +E + S +T K F KD L C T PR Sbjct: 61 -VDFISNFTDVDDKIIKASNEE------GISTSELTDKYINAFFKDYDALGCKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I I ++ G AYEA+ ++ F T +YG S++ ID+ G R+ H Sbjct: 114 VTEYMQEIIKFIAKLVEEGFAYEADGDVYFRTRKKEDYGKLSKQSIDDLISGARIEVGEH 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ P E W+SP+G GRPGWHIECS M+ LG+ DIH GG DL FPH Sbjct: 174 KEDPLDFALWKKAKPGEVKWDSPFGEGRPGWHIECSVMAKETLGETIDIHAGGQDLTFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C + +N W+HN F+N++ KMSKS GNF + +++ Sbjct: 234 HENEIAQSECHNHAS-FSNYWMHNAFINIDNVKMSKSLGNFRLVKDIIA-------EIDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIIDPA---- 350 V+RL ML HYR PI++T++ + A+ K + + + +D Sbjct: 286 MVLRLFMLTVHYRTPINYTLENIELAKTNFEKIKTSYQNLQFRLNNEMTEEKLDTEVVTL 345 Query: 351 -------VLSALYNDLNTVSAIQALHKLARESTK-------NHDLLPIFNASAH----IL 392 + +D NT +A+ + +++ R S N + L + NA+ IL Sbjct: 346 VTEELDKFEEYMQDDFNTANALSSWYEIVRISNSYTAKETVNKETLELINAAFETYSSIL 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 GI V ++ N S IE L+ ER K + F+ AD IR L+ +G ILED K Sbjct: 406 GINVKED--NTLDSEHIESLIAEREAARKNRDFALADKIRDDLKEQGIILEDTK------ 457 Query: 453 RMTRWKQ 459 + RWK+ Sbjct: 458 QGVRWKK 464 >gi|220930944|ref|YP_002507852.1| cysteinyl-tRNA synthetase [Halothermothrix orenii H 168] gi|219992254|gb|ACL68857.1| cysteinyl-tRNA synthetase [Halothermothrix orenii H 168] Length = 484 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 174/504 (34%), Positives = 257/504 (50%), Gaps = 69/504 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK +F ++ +RMYVCG TV ++AHIG+ R + +DV+ R L Y E Sbjct: 2 LRVYNTLSRKKEKFTPLETGKVRMYVCGLTVQNYAHIGHIRSAVNYDVIRRYLEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TDI++KI+ RAR+E + K T+ +++D ++ R Sbjct: 61 -VTYVQNFTDINEKIVARAREEGLRPL------ELADKYTKAYLEDIEKMKIKRADVYCR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+ I ++I +++ ++ G+AYE N + F +YG S R ++E + G RV Sbjct: 114 ATDTIKEIIKMVKKLLDKGYAYEVNGNVYFSVEKFSDYGKLSGRNLEEMQAGARVEVNEE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK++ E W+SPWG+G PGWHIECSAMS YLGK DIHGGG DLIFPH Sbjct: 174 KRHPMDFALWKKAPAGEISWDSPWGKGWPGWHIECSAMSIKYLGKRIDIHGGGTDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + W+HNG +NL+G KMSKS GNF T+ E+L + + Sbjct: 234 HENEIAQSESCTGEKPFVKYWLHNGSVNLKGEKMSKSLGNFFTVREIL-------KEFKP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------SKGII----------- 347 +R +L HYR PIDF + + A K T KG+I Sbjct: 287 DEVRYFLLTKHYRSPIDFNFEEVEAARKSWRKLVNTYQVMVQILEKGVITKNKITENTKG 346 Query: 348 -----------DPAVLSALYNDLNTVSAIQALHKLARESTK----------------NHD 380 + A+ +D NT A +H+LARE Sbjct: 347 ENTIISILNKKEKEFEEAMDDDFNTARATGVMHELAREINTFVNSPEFELNGETSKVLKK 406 Query: 381 LLPIFNASAHILGIEVC----KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 +F+ + ILG+++ E N+ ++ ++ +++ R + K + AD IR LE Sbjct: 407 AQNLFDRFSDILGLDLAFSSSDEVDNEILNNLVDFILEIRDEARQEKNWQLADRIRDGLE 466 Query: 437 SKGFILEDYKNPDNGQRMTRWKQK 460 GF ++D RW++K Sbjct: 467 DLGFEIKDT------PHGVRWERK 484 >gi|90962221|ref|YP_536137.1| cysteinyl-tRNA synthetase [Lactobacillus salivarius UCC118] gi|123269889|sp|Q1WSS5|SYC_LACS1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|90821415|gb|ABE00054.1| Cysteinyl-tRNA synthetase [Lactobacillus salivarius UCC118] Length = 470 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 171/491 (34%), Positives = 257/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + +F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKEKFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ +++ +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKASQE------MNLSVKEITEKFINAFYEDTSALNVKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID+ + G Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 185 KKN----PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 ++ P DF LWK+ E W SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKVKQGEISWNSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQSEAKTG-KKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KKVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 + ++ + + +D N + I ++++A++ + L+ + Sbjct: 346 VEVNFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IE+L+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFSEEK--ELLDDTIEQLIQERNEARKNKNFKRSDEIRDLLKEQGIILEDT--- 460 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 461 ---AQGTRWKR 468 >gi|119713265|gb|ABL97331.1| cysteinyl-tRNA synthetase [uncultured marine bacterium HF10_12C08] Length = 454 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 38/475 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +Y+T +F+ IDP+N+RMYVCGPTVYD+AH+GNARP+IVFD+L+RLL+ YG Sbjct: 1 MDLMLYDTFTNSKKKFEPIDPNNVRMYVCGPTVYDYAHVGNARPVIVFDILFRLLQKIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKII A + N+ I ++T K F D + L PT + Sbjct: 61 SGNVTYVRNITDVDDKIILAANDQ------NEDIGMLTEKTINYFHDDAKYVGALKPTFE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HIP+MI LI+ +I AY A+ ++F ++ YG S + +DE G+RV + Sbjct: 115 PRATEHIPEMIELIEKLISKEFAYVADGNVLFSSNKFKEYGKLSGKNLDEMVAGSRVGVE 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KK +DF+LWK S EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGG DLIF Sbjct: 175 SYKKEESDFVLWKPSKEDEPSWKSPWGDGRPGWHIECSAMSEKLLGENFDIHGGGQDLIF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA+ + AN W+HNGF+ +EG KMSKS+GNF+T+NEL + S+ Sbjct: 235 PHHENEIAQSECANNNK-FANYWVHNGFVTVEGNKMSKSDGNFVTVNELKD-------SF 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------KGIIDPAVLSAL 355 VIRL M+ THYR+P+++T L E++ L KW ++ D ++ L Sbjct: 287 QGEVIRLTMISTHYRQPLNWTKDNLNESKKTLDKWYTFLSNFNGDELKDANNDNEIMETL 346 Query: 356 YNDLNTVSAIQALHKLARE-STKNHDLLPIFNASAHILGIEVC---------KEHLNKNI 405 +D+NT AI LH+ +E + + L+ F SA++LG+ KE+LN N Sbjct: 347 LDDMNTPKAISVLHQKFKECQSGDKGLVSNFLYSANMLGLLNEKPSEWLSWKKENLNIN- 405 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + +E L+ +R K F AD IR +L+ G ILED + T WK K Sbjct: 406 TAQVELLIAQRNEARSNKNFDDADRIRNELDKMGVILEDQGD------ETTWKVK 454 >gi|56478148|ref|YP_159737.1| cysteinyl-tRNA synthetase [Aromatoleum aromaticum EbN1] gi|61216130|sp|Q5P1H8|SYC_AZOSE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56314191|emb|CAI08836.1| cysteinyl-tRNA synthetase [Aromatoleum aromaticum EbN1] Length = 461 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 186/482 (38%), Positives = 258/482 (53%), Gaps = 50/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL R+ F I P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR E Sbjct: 2 LHIHNTLTRRKEAFVPIAPGKVRMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA ++ ++I +T + +D L L P H+PR Sbjct: 61 -LTYVRNITDIDDKIIRRAGEK------GESIRTLTDRFIAAMHEDADALGVLRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ QM LI + G AY A N ++ + +YG FS + +DE + G RV Sbjct: 114 ATEYVMQMQSLIGRLRDKGLAYVAGNRDVCYSVRKFDSYGRFSGKSLDELRAGERVEVAG 173 Query: 184 HKKNPADFILWKRST---PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P E W SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL Sbjct: 174 DKQDPLDFVLWKHARTDEPDEVKWASPWGAGRPGWHIECSAMSSDLLGEQFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++LE Sbjct: 234 QFPHHENEIAQSEGAHG-HTFVNYWMHNGFVRVDDEKMSKSLGNFFTIRDVLER------ 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------- 350 + V+R +L HYR P++++ L +A L++ + D Sbjct: 287 -FDPEVVRFFILRAHYRSPLNYSDAHLEDARQALTRLYTALRNVQPSDAQVDWDEPHAMR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-------------FNASAHILGIEVC 397 +A+ +D NT A+ L +LA E+ ++ A L + Sbjct: 346 FRAAMDDDFNTAEAVAVLFELANEANRSGSAATAAQLKGLGGVLGLLAREPASFLQGRMA 405 Query: 398 KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 E +K +AIE +++ R + K K ++ AD IR QL + G +LED T W Sbjct: 406 GEP-DKGEGVAIESMIERRALAKKSKDYAEADRIRAQLLASGIVLEDT------PHGTVW 458 Query: 458 KQ 459 ++ Sbjct: 459 RR 460 >gi|170754736|ref|YP_001783143.1| cysteinyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] gi|229558626|sp|B1IGH6|SYC_CLOBK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169119948|gb|ACA43784.1| cysteinyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] Length = 465 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 257/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|50084652|ref|YP_046162.1| cysteinyl-tRNA synthetase [Acinetobacter sp. ADP1] gi|61216194|sp|Q6FC71|SYC_ACIAD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49530628|emb|CAG68340.1| cysteinyl-tRNA synthetase [Acinetobacter sp. ADP1] Length = 473 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 189/488 (38%), Positives = 266/488 (54%), Gaps = 57/488 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF P +I MYVCG TVYD+ HIG+AR M+ FD + R LR V Sbjct: 6 LYNSEQRKKVEFVPRKPGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQG--WDV 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+RNITDIDDKII+RA + N+ I +TS+ +D +L C P P+AT Sbjct: 64 RYIRNITDIDDKIIKRANEN------NETIQQLTSRFIDAMNEDAAKLGCAEPDEAPKAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I +M +I ++ G AY A N ++ F+ S YG S RK+++ + G RV + Sbjct: 118 EYIGEMQNMISTLVDKGSAYPASNGDVYFEVSKFEKYGRLSGRKLEDMQAGASERVDIEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP W SPWG GRPGWHIECSAMS+ LG FDIHGGG DL FP Sbjct: 178 EKKHPFDFVLWKGAKPNEPSWVSPWGNGRPGWHIECSAMSTCCLGNHFDIHGGGSDLTFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQSEASTG-EQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---------DPAVLS- 353 VIR ++ +HYR P++F+ L EA+ L+++ + + D + Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALTRFYHAFKAYEQVYGQNDSTQKDEQFIER 349 Query: 354 ---ALYNDLNTVSAIQALHKLARESTKN-----HDLLPI----FNASAHILGI------E 395 A+ +D NT AI L +L RE + + I ILG+ E Sbjct: 350 FNIAMRDDFNTPEAIAVLFELNRELNRAVKEQQAEQAAIYYVTLRHLTQILGLVQHDVDE 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 K + + + I+ ++Q+R K K FS AD IR+ L +G +LED + Sbjct: 410 FLKSDIGQEVLSLSDDEIQAMIQQRADAKKAKDFSGADAIRQALLDQGVVLEDTR----- 464 Query: 452 QRMTRWKQ 459 + T W++ Sbjct: 465 -QGTLWRR 471 >gi|262277058|ref|ZP_06054851.1| cysteinyl-tRNA synthetase [alpha proteobacterium HIMB114] gi|262224161|gb|EEY74620.1| cysteinyl-tRNA synthetase [alpha proteobacterium HIMB114] Length = 448 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 217/465 (46%), Positives = 287/465 (61%), Gaps = 28/465 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL R +F ID NIRMYVCGPTVYD+ H+GNARP+IVFD+L+RLL Y Sbjct: 3 LKISNTLTRSKEKFIPIDEKNIRMYVCGPTVYDYPHVGNARPLIVFDLLFRLLSKIYSTS 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKIIE + + +I +TSK T+ F D L CL PT +P+ Sbjct: 63 KVTYVRNITDIDDKIIEASNKSK------ISIQDLTSKVTKDFHDDCNYLGCLNPTIEPK 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+ +MI LI+ +I + AYE+N + F + YG+ S +KI+E G+RV + Sbjct: 117 ATEHLNEMINLIKKLIQNDFAYESNGHVYFQVTKFKKYGNLSNKKIEELISGSRVEVSDN 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK S EP W+SP+G+GRPGWH+ECSAMS YLG FDIHGGGLDLIFPH Sbjct: 177 KKEPGDFVLWKPSKENEPSWDSPFGKGRPGWHLECSAMSEKYLGNHFDIHGGGLDLIFPH 236 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA+ EK +N W+HNG++ +E +KMSKS GNFITINEL +++ Sbjct: 237 HENEIAQSTCANNNEKFSNYWLHNGYVTVEKQKMSKSLGNFITINEL-------KKNYNG 289 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-TSTSKGIIDPAVLSALYNDLNTVS 363 V+RLAML THY +P D+ + L ++ L KW + S K I L L +DLNT Sbjct: 290 QVVRLAMLSTHYTQPFDWNEKILDVSQKSLDKWYEFYSDEKEEISEENLKFLLDDLNTPL 349 Query: 364 AIQALHKLARESTKNHDL-LPIFNASAHILGIEVC-------KEHLNKNISIAIEKLVQE 415 I +H+L +++ L ++S ILG+ + + K + IEKL+ E Sbjct: 350 MISNIHELYKKAKTGDSLSAKQLSSSCKILGLFNQTHDEWKNFKKIGKITAEEIEKLISE 409 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 R K F ++D IR L SKG +++D K+ +T W+ K Sbjct: 410 RNKARSKKDFKTSDEIRDLLVSKGVLIKD-KDG-----ITTWEYK 448 >gi|187924487|ref|YP_001896129.1| cysteinyl-tRNA synthetase [Burkholderia phytofirmans PsJN] gi|187715681|gb|ACD16905.1| cysteinyl-tRNA synthetase [Burkholderia phytofirmans PsJN] Length = 465 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 256/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQEGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIRRA------VENGETIKALTDRFIDALHEDADALGIQRPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEQLEANGYAYQASDGDVNYAVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPDEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNFWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----SKGIID------ 348 + A V+R + HYR P++++ + +A L++ +D Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALARLYTALKDVTPDAAELDWNEAHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL----- 401 +A+ +D NT A+ L +LA E + D L + ++G+ + Sbjct: 346 QRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRSLGAVIGLLGREPRAYLQQA 405 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 AIE + R+ + K +++AD IR +L G LED T Sbjct: 406 AGAAAEGALEPAAIEAKIAARVAAKQAKDYAAADRIRAELLEAGVALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|254785975|ref|YP_003073404.1| cysteinyl-tRNA synthetase [Teredinibacter turnerae T7901] gi|259511843|sp|C5BI15|SYC_TERTT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|237685828|gb|ACR13092.1| cysteine--tRNA ligase [Teredinibacter turnerae T7901] Length = 458 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 201/478 (42%), Positives = 279/478 (58%), Gaps = 42/478 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNT R+ +F +DP+ I+MYVCGPTVY+ HIGNARP++VFD L+R+L+Y Y Sbjct: 1 MSLRIYNTATRQKEDFVPVDPAAIKMYVCGPTVYNLVHIGNARPVVVFDTLFRVLQYLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y RNITDIDDKI++ A + + IS + ++ ++ +D +L L PT Sbjct: 60 -DNVIYARNITDIDDKIMKAAAEN------GEPISALAARYAAEYERDMAQLNALQPTIV 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT H+ QMI + Q ++ GHAY A+ ++FD S+ +YG S R +++ G RV Sbjct: 113 PYATEHLEQMIAMTQALVNKGHAYAADGHVLFDVQSMGDYGELSNRSLEDMLDGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KK DF+LWK S EPGWESPWGRGRPGWH+ECSAM +LG DIHGGG DLIF Sbjct: 173 PYKKYAGDFVLWKPSADAEPGWESPWGRGRPGWHLECSAMIEKHLGNTIDIHGGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS CA E+ W+HNG++N++G KMSKS GNF T+ ELLE S+ Sbjct: 233 PHHENERAQSQCAHDGEQYVKYWMHNGYINIDGEKMSKSLGNFRTVRELLE-------SF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-QTSTSKGIIDPA--------VLS 353 P VIR A+L YR +DF+ + L +++ L ++ I PA + Sbjct: 286 PGEVIRFALLSAQYRSELDFSAELLEQSKASLDSLYGALRKTEEEILPAGPALAASPGFA 345 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGIEVCKEHL----- 401 AL +DLNT AI LH+LAR ES + + A A+++G+ Sbjct: 346 ALMDDLNTPLAISELHQLARTVHKAEPESEEAQSAKGMMLALANLMGLLQEDPETWFQGG 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE L+ ER K+++ AD IR++L++KG +LED + T WK+ Sbjct: 406 AEQDVSWIEALIAERQQAKLDKQYARADEIREELKAKGILLEDSR------EGTTWKK 457 >gi|226950955|ref|YP_002806046.1| cysteine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] gi|254781234|sp|C1FMX3|SYC_CLOBJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226842951|gb|ACO85617.1| cysteine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] Length = 465 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 256/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKSALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|73748013|ref|YP_307252.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. CBDB1] gi|109894897|sp|Q3ZWG4|SYC_DEHSC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|73659729|emb|CAI82336.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. CBDB1] Length = 457 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 175/477 (36%), Positives = 241/477 (50%), Gaps = 42/477 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ +F ++ ++MYVCG T HIG+A I FDV+ R L Y Sbjct: 1 MKIYNTLSGKLEKFVPLENGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLTYKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII +A + S + +N F+ L + PR Sbjct: 59 RVKYIQNFTDIDDKIIAKANAQ------GIEPSTLAERNIGVFLDAMAALNITPADYYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++I ++ +I G+AY + + YG S R +++ G RV Sbjct: 113 ATQEVPKIIEMVSGLIEKGYAYAVGGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEIDEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 173 KEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + A Sbjct: 233 HENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALSR-------YSA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------PAVL 352 +R+ +L + YR P+ ++ + L AE + QT+ K Sbjct: 286 DALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARKDNPQFKETAVDTKAYRERFT 345 Query: 353 SALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFNASAHILGIE--VCKEHLNK 403 + ND NT +A+ + L+RE K+ D +F A ILG+ V + Sbjct: 346 QYMDNDFNTSAALATIFDLSRELNRIEGEAGKSTDGQKLFKELADILGLSLIVAESKTGT 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ IE L++ R L K++ AD IR L++ G +LED T WK K Sbjct: 406 DVAPFIELLIELRKDLRVAKQYQLADKIRTSLDTAGILLEDS------AGGTVWKVK 456 >gi|322807828|emb|CBZ05403.1| cysteinyl-tRNA synthetase [Clostridium botulinum H04402 065] Length = 465 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 174/488 (35%), Positives = 256/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T ++LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTARQILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKEIVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|156742112|ref|YP_001432241.1| cysteinyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] gi|156233440|gb|ABU58223.1| cysteinyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] Length = 478 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 180/498 (36%), Positives = 249/498 (50%), Gaps = 61/498 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+IYNTL R + F+ ++P ++MYVCG TVYD AHIG+A IVFDV+ R L Y Sbjct: 1 MSIRIYNTLTRTLEPFETLEPGVVKMYVCGVTVYDRAHIGHAMSAIVFDVVRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V N TD+DDKII RA + + +F++D L Sbjct: 61 --AVQHVVNFTDVDDKIINRA------HALGRDPKELAESYIAEFLEDLEALNVKRAHIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +P++ I +I GHAY + ++ F S+ P+YG SRR +D+ G R+ Sbjct: 113 PRATETMPEIQRFISRLIETGHAYVVDGDVYFRVSTAPDYGKLSRRSLDDMIAGNRIGID 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NPADF LWK + P EP W+SPWG GRPGWHIECSAM+ +LG+ DIHGGG DLIF Sbjct: 173 ERKENPADFALWKAAKPGEPFWDSPWGPGRPGWHIECSAMNLAHLGEQIDIHGGGTDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEG---------RKMSKSNGNFITINELLE 293 PHHENEIAQ+ + A W+HNG L ++ KMSKS GN +TI E L Sbjct: 233 PHHENEIAQTESLTG-KTFARYWMHNGMLQIQTRLADGTYKLEKMSKSLGNVVTIREFLA 291 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------- 340 + V+RL +L + YR P+ F + + E L++ Sbjct: 292 R-------YHPDVLRLTVLSSSYRSPLAFGEEIAADQERKLARLRSALEPPIGTIEAGPA 344 Query: 341 ----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFN 386 + ++A+ +D NT A+ AL L R D F Sbjct: 345 VEVLLAAVRTARERFIAAMDDDFNTAGALAALFDLVRSINTARDAGVGGAPFAEAQATFR 404 Query: 387 ASAHILGIEVCKEH-LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+ + + + + I+ LV+ R L K K+F+ AD +R +L G +LED Sbjct: 405 ELVDVLGLTLIAPRPVTQQAAPFIDLLVEVRSELRKAKQFALADMVRDRLAQLGVMLEDT 464 Query: 446 KNPDNGQRMTRWKQ--KP 461 + TRWK KP Sbjct: 465 ------PQGTRWKVTDKP 476 >gi|317051773|ref|YP_004112889.1| cysteinyl-tRNA synthetase [Desulfurispirillum indicum S5] gi|316946857|gb|ADU66333.1| cysteinyl-tRNA synthetase [Desulfurispirillum indicum S5] Length = 465 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 250/484 (51%), Gaps = 52/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNT +F I+P R+YVCG T YD HIG+AR + FD + R L Y E Sbjct: 2 IRLYNTQSSSKEDFIPIEPGKARIYVCGVTTYDHCHIGHARSAVAFDSIRRYLSYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII RAR+ + + + + +D L L PT PR Sbjct: 61 -VTFVKNYTDIDDKIINRAREN------GEEWKALAERFISEHDRDMAALYVLPPTIAPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT H+P+MI LI+ ++ +G+AY+ ++I F YG S + +++ + G+RV Sbjct: 114 ATEHLPEMIALIEKLLDNGYAYKGGDDIFFRVHRFTEYGKLSHKALEDLQSGSRVEVNPL 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK EP WE+ +G GRPGWHIECSAM +LG+VFDIHGGG DLIFPH Sbjct: 174 KENPLDFVLWKGKKEGEPSWEASFGAGRPGWHIECSAMGHKHLGRVFDIHGGGKDLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A WIHNGF+N+ KMSKS GNF TI E+L + + Sbjct: 234 HENEIAQSQAGYGCAP-ARYWIHNGFVNINNEKMSKSLGNFFTIKEIL-------QHYDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------------KGIID 348 V+RL + THYR PIDF + +T A L K + + I Sbjct: 286 EVLRLFLAQTHYRSPIDFCEENMTMARQALEKLYRFLENFENHEDTRTSDSIAPVLSDIT 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTK----NHDLLPIFNA---SAHILGIE------ 395 A+ +D N+ A+ +L + K + D I++ +LGI Sbjct: 346 RKFEEAMDDDFNSALALASLFEGVHTLNKLNPSSADAKGIYDTYCRLGDVLGIFQSLPSQ 405 Query: 396 -VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 ++ ++ + I ++ R + K F++AD IR +L G ++D K Sbjct: 406 WFARQSTSQLSADEIAARIEARNAARRDKDFATADRIRDELLENGVEIKDSK------EG 459 Query: 455 TRWK 458 T W+ Sbjct: 460 TSWR 463 >gi|312862597|ref|ZP_07722838.1| cysteine--tRNA ligase [Streptococcus vestibularis F0396] gi|311101857|gb|EFQ60059.1| cysteine--tRNA ligase [Streptococcus vestibularis F0396] Length = 447 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFIPLTENVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYCGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------AGISTKELSDKFITAFMEDTAQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 N++ ++I + +I G AY A ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSTLIDKGFAYVAEGDVYFRVAKSKNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDRKENPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AE+ L T A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTDQVNQDELQTYLDAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + + L +A+ + + F + GI +E L+++ Sbjct: 346 QVAMDDDFNTANGVTVLFDMAKWINSGNYDETVKDAFEKMLQVFGIVFEEEVLDED---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 402 IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|91788726|ref|YP_549678.1| cysteinyl-tRNA synthetase [Polaromonas sp. JS666] gi|122967676|sp|Q129L2|SYC_POLSJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|91697951|gb|ABE44780.1| cysteinyl-tRNA synthetase [Polaromonas sp. JS666] Length = 462 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 175/483 (36%), Positives = 248/483 (51%), Gaps = 47/483 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R + F + P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ Sbjct: 1 MSLRIYNTLSRDVEVFSPLLPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVSGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRN+TDIDDKII+RA + + I +T + +D L PTH+ Sbjct: 61 K--VTYVRNVTDIDDKIIKRA------VENGETIRSLTDRMVVALHQDADALGIERPTHE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEAN-----NEIIFDTSSIPNYGSFSRRKIDEQKMGT 177 PRAT+ +PQM+ LI + G AY+ ++ + YG S + +DE + G Sbjct: 113 PRATDFVPQMLSLIGTLEKKGLAYQTQSGSGQGDVNYAVRKFDGYGKLSGKSLDELRAGE 172 Query: 178 RVPEKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 RV K +P DF+LWK + P EP W+SP+G GRPGWHIECSAM+ LG+ FDIH Sbjct: 173 RVEVLDGKDDPLDFVLWKSAKPSEPDDAKWDSPYGPGRPGWHIECSAMACELLGESFDIH 232 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHENEIAQS A + A W+HNGF+ ++ KMSKS GNF TI E+L Sbjct: 233 GGGADLQFPHHENEIAQSEGAFG-KPLAGTWMHNGFVRVDNEKMSKSLGNFFTIREILA- 290 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------K 344 + A +R ++ HYR P++++ L +A L + Sbjct: 291 ------KYDAETVRFFIIRAHYRSPLNYSDAHLDDARNSLKRLYTALDLVSPAVVAIDWT 344 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCK---- 398 +A+ D T A+ L LA E K +L + + LG+ Sbjct: 345 NPFAARFKAAMDEDFGTPEAVAVLFDLAGEVNKTRSAELAGLLKSLGGCLGLLQSAPGSY 404 Query: 399 -EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + +I++L+ +R K K F+ AD IR L +G +L+D T W Sbjct: 405 LQAGAGLDDASIQRLIAQRADAKKTKNFAEADRIRNDLLGQGIVLKDS------PAGTTW 458 Query: 458 KQK 460 + + Sbjct: 459 EVQ 461 >gi|153940395|ref|YP_001392856.1| cysteinyl-tRNA synthetase [Clostridium botulinum F str. Langeland] gi|187629802|sp|A7GJ96|SYC_CLOBL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|152936291|gb|ABS41789.1| cysteine--tRNA ligase [Clostridium botulinum F str. Langeland] gi|295320834|gb|ADG01212.1| cysteine--tRNA ligase [Clostridium botulinum F str. 230613] Length = 465 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 257/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINIDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGNP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGVRWKQ 464 >gi|239906952|ref|YP_002953693.1| cysteinyl-tRNA synthetase [Desulfovibrio magneticus RS-1] gi|259511829|sp|C4XSW5|SYC_DESMR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|239796818|dbj|BAH75807.1| cysteinyl-tRNA synthetase [Desulfovibrio magneticus RS-1] Length = 485 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 176/499 (35%), Positives = 244/499 (48%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT+ R F + P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQLYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII++A E I + F +D +L L P +P+ Sbjct: 60 -VTFVRNFTDVDDKIIKKANAE------GTTSQEIAERYIATFYEDMDKLGILRPNAEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I +M L Q +I GHAY + ++ F S YG S R +++ + G RV Sbjct: 113 ATEYIGEMASLAQRLIDSGHAYRTPSGDVYFRVRSFAGYGKLSGRDVEDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK S P EP WESP+G GRPGWH+ECSAMS LG DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKASKPGEPVWESPFGPGRPGWHLECSAMSEKLLGMPIDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E W+HNGF+ + KMSKS GNFITI ++ + Sbjct: 233 HHENEIAQSEAAIGGE-FCRYWVHNGFVRINTEKMSKSLGNFITIRDIYAR-------YL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---------------- 347 V+R +L + YR P+D++ Q L EAE + + Sbjct: 285 PEVLRFFLLSSQYRSPLDYSDQGLDEAEKGIKRIYAAKVQMEQALGRAKWSETKLPADVT 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 + +A+ +DLNT A+ + L R + + + +L F Sbjct: 345 EELSRHEEGFTAAMDDDLNTAQAMGHVFGLVRLAGRLMEDKTLAKSRETAEVLGRILADF 404 Query: 386 NASAHILG------------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 A +LG ++ C+ + ++ LV ER K K F+ +D IR Sbjct: 405 GVWAEVLGVFGTDATAFLADLKACRLTRLGIDAARVDGLVAERQDARKAKDFARSDAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L S G + D Sbjct: 465 ELASLGVTVMDTPTGPQWD 483 >gi|308070997|ref|YP_003872602.1| Cysteinyl-tRNA synthetase (cysteine--tRNA ligase) [Paenibacillus polymyxa E681] gi|305860276|gb|ADM72064.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Paenibacillus polymyxa E681] Length = 467 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 169/491 (34%), Positives = 251/491 (51%), Gaps = 57/491 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNT+ R F ++P ++MYVCGPTVYD+ HIGNARP+IVFDV+ L Y Sbjct: 1 MPLQIYNTMTRSREPFAPLEPGKVKMYVCGPTVYDYIHIGNARPVIVFDVVRSYLEYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I +AR+ ++ +S + K + +D L A + Sbjct: 61 D--VNYVVNFTDVDDKLIRKARE------LDMDVSAVAEKFIAAYYEDLAGLNVPAASMN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + +I I+ ++ G+AYE + ++ + T +YG S + ++E + G R+ Sbjct: 113 PRVTESMDLIIDFIKELVDKGYAYENDGDVFYRTKKFKDYGQLSGQNLEELQFGIRINVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+N DF+LWK + P E W SPWG GRPGWHIECSAM+ HYLG DIHGGG DL F Sbjct: 173 ERKENAEDFVLWKAAKPGEIHWSSPWGDGRPGWHIECSAMARHYLGDTLDIHGGGQDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE E AQS + + W+HNG++ ++ KMSKS GN I + +L K Sbjct: 233 PHHECECAQSEVITG-KPLSRYWMHNGYIRIDNEKMSKSLGNGILVKDLRAHHK------ 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------------------- 343 +R ML THYR P+++ + +++AE + + + Sbjct: 286 -PEALRYFMLSTHYRNPLNYNQETMSQAENSVERIANAVANVKHRLANALEGNGEVSTEL 344 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASA 389 I + +D NT AI A+ E+ + +L F++ Sbjct: 345 QTKLDGILQQFGEKMNDDFNTPDAITAVFDWVSEANHLLQRDVVHQAELQAVLHTFHSMN 404 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +L I E + + IE+L+ ER+ K K +S AD IR L +KG +LED Sbjct: 405 SVLRI--YSEPSEELLDDEIEQLIAERVEARKTKNWSRADEIRDLLAAKGIVLEDT---- 458 Query: 450 NGQRMTRWKQK 460 + RW++K Sbjct: 459 --AQGMRWRRK 467 >gi|322377813|ref|ZP_08052302.1| cysteine--tRNA ligase [Streptococcus sp. M334] gi|321281236|gb|EFX58247.1| cysteine--tRNA ligase [Streptococcus sp. M334] Length = 447 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDAQELQTFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + + + GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALASMLEVFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|322374782|ref|ZP_08049296.1| cysteine--tRNA ligase [Streptococcus sp. C300] gi|321280282|gb|EFX57321.1| cysteine--tRNA ligase [Streptococcus sp. C300] Length = 447 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDIQELQDFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + A + GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IETLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|326790451|ref|YP_004308272.1| cysteinyl-tRNA synthetase [Clostridium lentocellum DSM 5427] gi|326541215|gb|ADZ83074.1| cysteinyl-tRNA synthetase [Clostridium lentocellum DSM 5427] Length = 472 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 178/487 (36%), Positives = 261/487 (53%), Gaps = 53/487 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL ++ EF+ I+P +RMYVCGPTVY+ HIGNARP IVFD + R E Sbjct: 2 IKIYNTLTKRKEEFKPIEPHKVRMYVCGPTVYNLIHIGNARPYIVFDTVRRYFESVGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII++A +E + + + ++ ++ +KD L TH PR Sbjct: 61 -VNYVQNFTDVDDKIIKKANEE------GRSTNEVVTQYIEETLKDVNNLNVTPATHHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG--TRVPEK 182 T + ++I +I+ +I G+AYE N + FDT++ YG S++ ++E + G RV Sbjct: 114 VTEEMDRIIEMIKELIEKGYAYEINGTVYFDTAAFEQYGKLSKKVLEELEAGRSERVALT 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKN DF+LWK EP WESPW GRPGWHIECSAM+ YLG DIH GG DL+F Sbjct: 174 EEKKNHMDFVLWKPKKEGEPYWESPWSNGRPGWHIECSAMAKRYLGDTIDIHAGGEDLVF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA+ E A+ W+HN FLN++ +KMSKS GNF T+ ++ G + Sbjct: 234 PHHENEIAQSECANGKE-FAHYWMHNAFLNIDNKKMSKSLGNFKTLRDV-------GEMY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------------- 342 V+R ML HYR P++F+ + + A+ L + Sbjct: 286 GYDVVRFFMLNAHYRSPLNFSAELIESAKNSLERIKNAKATLSFALEHSQIADLTEEEKA 345 Query: 343 ---SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASA 389 + +D NT AI + +L + + +L +FN Sbjct: 346 LLKELDDFKARFHEHMEDDFNTADAISIIFELVKFANTYAKEGASQPFVEAVLKLFNELT 405 Query: 390 HILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 ILG+ ++ N++ I++ +++R K + F+ AD IR L+ +G ++ED + Sbjct: 406 DILGLIYDRKGNNEDGLSDEEIKEYIEKRTAAKKARDFAEADRIRDFLKDQGVLIEDTRE 465 Query: 448 PDNGQRM 454 +R+ Sbjct: 466 GVRFKRI 472 >gi|83719803|ref|YP_442471.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis E264] gi|167581386|ref|ZP_02374260.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis TXDOH] gi|167621097|ref|ZP_02389728.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis Bt4] gi|257138679|ref|ZP_05586941.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis E264] gi|109894888|sp|Q2SX78|SYC_BURTA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83653628|gb|ABC37691.1| cysteinyl-tRNA synthetase [Burkholderia thailandensis E264] Length = 465 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 180/484 (37%), Positives = 251/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R +F P +RMYVCG TVYD+ HIG+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------LENGETIQSLTRRFIDAMNADFDALGVERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K K +P DF+LWKR+ P EP WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 KDAKDDPLDFVLWKRAKPEEPAGASWESKYGAGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----SKGIID------ 348 + A V+R ++ THYR P++++ L +A L++ +D Sbjct: 288 --KYDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVTPDAAPLDWSEAHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT A+ L +LA E + + L A L Sbjct: 346 QRFAAAMNDDFNTAVAVAVLFELATEVNRTREPALARQLKRLAGLLGLLGREPREFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 AGAARTGALEPDEIEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|113477437|ref|YP_723498.1| cysteinyl-tRNA synthetase [Trichodesmium erythraeum IMS101] gi|123160290|sp|Q10XJ9|SYC_TRIEI RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110168485|gb|ABG53025.1| cysteinyl-tRNA synthetase [Trichodesmium erythraeum IMS101] Length = 489 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 176/506 (34%), Positives = 263/506 (51%), Gaps = 71/506 (14%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YN+L R+ F+ ++P+ I+MYVCG TVYD+ H+G+AR I +D + R L + + Sbjct: 3 LKLYNSLTRQEETFEPLEPNIIKMYVCGVTVYDYCHLGHARSYIAWDTMRRYLIWQGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKI++RAR+ ++ + + T+ + +D RL L PR Sbjct: 62 -VRYVQNFTDIDDKILKRARE------TGSSMDSVAKRFTEAYFEDMKRLNVLEADEYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I ++ LI ++ G AY + ++ + YG S R+++E + G Sbjct: 115 ATQNIDRIQNLIHDLEKKGFAYSSGGDVYYQVREFSQYGKLSGRRLEEMQAGASGRVDSE 174 Query: 185 ------KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 KK+P DF LWK + EP W+SPWG+GRPGWHIECSAM LG+ DIH GG Sbjct: 175 DLETAKKKDPFDFALWKAAKTGEPAWDSPWGKGRPGWHIECSAMVQDCLGETIDIHAGGA 234 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DLIFPHHENEIAQS + + A W+HNGF+ + G KMSKS GNF TI +LL+ Sbjct: 235 DLIFPHHENEIAQSEASTG-KILARYWLHNGFVTINGEKMSKSLGNFTTIRDLLD----- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------SK 344 + +R+ +L YR+PIDFT + + A+ + + +K Sbjct: 289 -QPVDPMALRMFVLTAQYRKPIDFTEEAIASAKNGWNTIKEGILFPYQYGPKLGWEMPAK 347 Query: 345 GIID---------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------- 382 + D A+ +D+NT +A+ L +LA++ + ++L Sbjct: 348 NLSDQTLLLTSYLEKFQKAMDDDINTPAALAILFELAKDLRREGNVLIHEGKTETSLEEL 407 Query: 383 ----PIFNASAHILGIEVCKEHLNKNISI-----AIEKLVQERLILLKMKKFSSADYIRK 433 + + +LG+EV E NIS IE L+Q+RL K K +S AD IR Sbjct: 408 KKQWVTLVSLSQVLGLEVKIEEQVSNISEGLSNIEIESLIQQRLEAKKAKNYSEADRIRN 467 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQ 459 +L+S+G L D +T W + Sbjct: 468 ELQSQGIKLIDKSGG-----LTNWHR 488 >gi|238898628|ref|YP_002924309.1| cysteinyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259511836|sp|C4K6G8|SYC_HAMD5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229466387|gb|ACQ68161.1| cysteinyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 461 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 258/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT RK F I P+ + MYVCG T+YD HIG+AR +VFDV+ R LRY Sbjct: 2 LKIFNTFNRKKELFTPIHPNTVGMYVCGVTIYDLCHIGHARTFVVFDVVARYLRYLGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII+RA Q H + +T++ ++ +D L L P +PR Sbjct: 60 SLTYVRNITDIDDKIIQRASQNH------QSCEALTAQMLKEMYRDFDELNLLRPDLEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L Q ++ +AY A N +++F P+YG SR+ +++ + G RV Sbjct: 114 ATEHITEMITLTQQLLDQKYAYVAANGDVLFSVEKNPHYGLLSRQNLEQLQAGARVEVME 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK S P EP W SPWG GRPGWHIECSAM++ LG FDIHGGG DL+FP Sbjct: 174 SKHHPMDFVLWKMSKPNEPHWPSPWGEGRPGWHIECSAMNAKALGPHFDIHGGGADLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS CA + N W+H+G + + KMSKS NF TI +LL + + Sbjct: 234 HHENEMAQSICAHKA-PYVNCWMHSGMIMINKEKMSKSLNNFCTIRDLL-------QRYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 +R +L HYR P+++T + L +A I L++ + +SA Sbjct: 286 PETLRYFLLSAHYRSPLNYTEENLKQARIALTRLYTALRDTNQKAFPEGGESFEKRFVSA 345 Query: 355 LYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIEVCK-------- 398 + +D NT A L ARE K L +LG+ Sbjct: 346 MNDDFNTPEAYAVLFDTAREINKLKKEHPKAADGLAAQLRKMGKVLGLLESGSLLSLLNP 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 E +++ S I L+++R + K + AD R +L G ++ED +N T W+ Sbjct: 406 EKDDRHQSAEIADLIEKRNLARAHKNWEEADNARTRLFEMGVVVEDTEN------GTNWR 459 Query: 459 QK 460 ++ Sbjct: 460 RR 461 >gi|258509321|ref|YP_003172072.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus GG] gi|257149248|emb|CAR88221.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus GG] gi|259650602|dbj|BAI42764.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus GG] Length = 468 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 255/492 (51%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A +A + + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIITAA------HKTGEAPLDLAQRFIDAFMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 A+ IP ++ +Q++I G+AY + ++ + +YG S + +DE + G Sbjct: 114 ASQMIPDIVDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELDKKEDPIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS ++ W+HNGF+ + + +KMSKS GNFIT++++L+T Sbjct: 234 EFPHHENEIAQSEAKTG-KQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------------------Q 339 V+R M T YR PI ++ L A L++ Q Sbjct: 290 ----DPQVLRFFMAGTQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAVAGVDAQ 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + + ++A+ +D+N + + L LA+ + +DLL ++A Sbjct: 346 ITAELKTLKDRFIAAMDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ N+ I+ LV+ R + K F+ +D IR QL ++G ILED Sbjct: 406 LQIFGVVFTDP---TNLDANIDALVKARDVARAAKDFAKSDEIRDQLAAQGIILEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 460 ---PQGTRWRRK 468 >gi|300214882|gb|ADJ79298.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Lactobacillus salivarius CECT 5713] Length = 470 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 172/491 (35%), Positives = 259/491 (52%), Gaps = 60/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL + F+ ++P + MYVCGPTVY++ HIGNAR + FD + R L Y E Sbjct: 2 LQLYNTLTNQKERFEPLNPGKVTMYVCGPTVYNYIHIGNARSAVAFDTIRRYLEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ +++ +N ++ IT K F +DT+ L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKASQE------MNLSVKEITEKFINAFYEDTSVLNIKKATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +++ +I I+ ++ G+AYE+ ++ + T +YG S + ID+ + G Sbjct: 114 VMDNMDDIIKFIEVLVQKGYAYESAGDVYYKTRKFKDYGKLSGQLIDDLEQGASSRVDDI 173 Query: 185 KKN----PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 ++ P DF LWK++ E W+SPWG+GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 DQDKKQDPLDFALWKKAKQGEISWDSPWGQGRPGWHIECSVMSTKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS +K A W+HNGF+ + E +KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQSEAKTG-KKFARYWLHNGFVTIGEEDQKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIR M T YR PI ++ L EA++ L+K + Sbjct: 287 -KEVNPQVIRFFMSTTQYRRPIRYSSANLNEAKVNLNKLQTAYENLSYRLKDSVEGNDKE 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 + ++ + + +D N + I ++++A++ ++L+ + Sbjct: 346 VEANFANLEKDFVKVMDDDFNVQNGISVVYEMAKQLNVYSEKEKVYTDTINNLINTYKKV 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI +E + + IEKL+QER K K F +D IR L+ +G ILED Sbjct: 406 VEIFGISFNEEK--ELLDDTIEKLIQERNEARKNKNFKRSDEIRDLLKEQGIILEDT--- 460 Query: 449 DNGQRMTRWKQ 459 + TRWK+ Sbjct: 461 ---AQGTRWKR 468 >gi|116627043|ref|YP_819662.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMD-9] gi|116100320|gb|ABJ65466.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMD-9] gi|312277506|gb|ADQ62163.1| Cysteinyl-tRNA synthetase, putative [Streptococcus thermophilus ND03] Length = 447 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 253/469 (53%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENTVNMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------VGISTKELSDKFITAFMEDTAQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 N++ ++I + +I G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSILIDKGFAYVSEGDVYFRVTKSNNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDRKEDPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 V+R + YR+PI+FT + + +AE+ L T + + +D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTEEVSQAELQAYLD-A 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + + L +A+ + + F + GI +E L+++ Sbjct: 345 FQAAMDDDFNTANGVTVLFDMAKWINSGNYDETVKNAFEKILQVFGIVFEEETLDED--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 402 -IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|55820186|ref|YP_138628.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55822074|ref|YP_140515.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] gi|61216120|sp|Q5M1W6|SYC_STRT1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216121|sp|Q5M6F6|SYC_STRT2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|55736171|gb|AAV59813.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55738059|gb|AAV61700.1| cysteinyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] Length = 447 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 253/469 (53%), Gaps = 41/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENTVNMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------VGISTKELSDKFITAFMEDTAQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 N++ ++I + +I G AY + ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSILIDKGFAYVSEGDVYFRVTKSNNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDRKEDPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 V+R + YR+PI+FT + + +AE+ L T + + +D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTEEVSQAELQAYLD-A 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISI 407 +A+ +D NT + + L +A+ + + F + GI +E L+++ Sbjct: 345 FQAAMDDDFNTANGVTVLFDMAKWINSGNYDETVKDAFEKILQVFGIVFEEETLDED--- 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D K G R TR Sbjct: 402 -IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|320162457|ref|YP_004175682.1| cysteinyl-tRNA synthetase [Anaerolinea thermophila UNI-1] gi|319996311|dbj|BAJ65082.1| cysteinyl-tRNA synthetase [Anaerolinea thermophila UNI-1] Length = 468 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 183/485 (37%), Positives = 253/485 (52%), Gaps = 53/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK F+ ++P +RMYVCGPTVY+ AH+G+A +VFD++ R L Y + Sbjct: 3 LKIYNTLTRKKEPFETLEPGKVRMYVCGPTVYNKAHVGHAMSALVFDIIRRYLEYRGYQ- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V + N TD+DDKII RA Q + + Q++ K+ L L T PR Sbjct: 62 -VKHAMNYTDVDDKIILRASQ------LGMDPFALAETYIQEYRKNLEDLNVLPATINPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I Q+I +IQ +I G+AY A N ++ F + +YG S RK+DE + G R+ Sbjct: 115 ATQEIDQIIAIIQGLIEKGYAYPAPNGDVYFRVTRDEDYGRLSGRKLDEMQAGARIEVGE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM+ H+LG+ DIHGGG DLIFP Sbjct: 175 QKEHPMDFALWKAAKPGEPAWDSPWGKGRPGWHIECSAMNLHHLGEQIDIHGGGNDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + A W+HNG L G KMSKS GN +TI E L Sbjct: 235 HHENEIAQSESYTG-KPFARYWVHNGMLQFGGEKMSKSLGNLVTIEEFLARH-------D 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----PQTSTSKGIIDPA-------- 350 A V+RL +L + YR P+ F + + E L + P + GI A Sbjct: 287 ADVLRLMVLNSGYRAPLTFNDDVIEQTERALERLKSALRPALPGAAGISAEAVKALEEQA 346 Query: 351 ------VLSALYNDLNTVSAIQALHKLARESTKNHDLLP----------IFNASAHILGI 394 A+ +D NT A+ L +L R + A +LG+ Sbjct: 347 RAARAGFEEAMDDDFNTAGALSHLFELVRAINSARTEGATDEQLRVGQDVLRELAGVLGL 406 Query: 395 EVC-KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + +E + + I+ L++ R L K K ++ +D IR +L + G LED + Sbjct: 407 RLRMEEEKPQEAAPFIDLLIEVRTELRKQKLWALSDLIRDRLTALGVTLEDTR------E 460 Query: 454 MTRWK 458 T W+ Sbjct: 461 GTTWR 465 >gi|34762389|ref|ZP_00143391.1| Cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887971|gb|EAA25037.1| Cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 473 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 180/492 (36%), Positives = 272/492 (55%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKKDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSKKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENERAQSKCGCGG-TFARYWMHNGYININGEKMSKSSGSFVLLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P++F+ L + + L + T Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDAELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 +K I+ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEIEAKFIEAMDEDFNTAQALGYIFELVKAVNKTLDEVNISKKGLEVIDEVYSYLVM 405 Query: 390 ---HILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|293364920|ref|ZP_06611637.1| cysteine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307703173|ref|ZP_07640119.1| cysteinyl-tRNA synthetase [Streptococcus oralis ATCC 35037] gi|291316370|gb|EFE56806.1| cysteine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307623248|gb|EFO02239.1| cysteinyl-tRNA synthetase [Streptococcus oralis ATCC 35037] Length = 447 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVSFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPLEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + +++ G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVTDLVEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDAQELQAFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N+ + I + ++A+ + + A + GI +E L+ + Sbjct: 346 VAAMDEDFNSANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|75909922|ref|YP_324218.1| cysteinyl-tRNA synthetase [Anabaena variabilis ATCC 29413] gi|109894882|sp|Q3M6R3|SYC_ANAVT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|75703647|gb|ABA23323.1| cysteinyl-tRNA synthetase [Anabaena variabilis ATCC 29413] Length = 486 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 173/500 (34%), Positives = 250/500 (50%), Gaps = 58/500 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R+ + ++P ++MY CG TVYD+ H+G+AR IV+D + R L + Sbjct: 1 MTLTIYNTLTRRQEPLETVEPGKVKMYCCGVTVYDYCHLGHARSYIVWDTIRRYLIWRGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKI+ RA+++ ++ ++++ + D RL L Sbjct: 61 E--VKYIQNFTDIDDKILNRAKEQ------GSTMAEVSNRFIDAYFADIRRLNVLDADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PR T HIP++ LIQ + G AY ++ + P+YG S R++++ + G Sbjct: 113 PRVTEHIPEIHQLIQILEEKGLAYAVGGDVYYRVERFPSYGKLSGRELEQMQAGASGRVD 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM LG DIHGGG Sbjct: 173 VEDSEPKKQHPFDFALWKAAKPGEPAWDSPWGQGRPGWHIECSAMIRSKLGATIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET-KK 296 DLIFPHHENEIAQS A + A W HNG + + G+KMSKS GNFITI ELL+ Sbjct: 233 GDLIFPHHENEIAQSEAAMN-QPLARYWTHNGMVMVNGQKMSKSLGNFITIRELLDGVGS 291 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQT 340 + G +RL +L HYR+P+DFT + + AE W Q Sbjct: 292 WKGDPVNPMAVRLFVLQAHYRKPLDFTEEAIANAENSWKTLKEGLLFGYQYGEKLGWGQE 351 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------P 383 S + +D N + L +LA+E + ++L Sbjct: 352 SAIIPELATRFQELGDDDFNFSGGLAVLFELAKELRREGNILVHEGTTKTPSDELQRQWN 411 Query: 384 IFNASAHILGIEVCKEHLN----KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 +LG+E + IE L+++R K K FS +D IR +L+++G Sbjct: 412 TLVTLGKVLGLEATPDDETLTQPGLSDTDIEALIEQRQAARKNKNFSESDRIRNELQAQG 471 Query: 440 FILEDYKNPDNGQRMTRWKQ 459 L D + TRW + Sbjct: 472 VTLIDS------PQGTRWHR 485 >gi|168178810|ref|ZP_02613474.1| cysteinyl-tRNA synthetase [Clostridium botulinum NCTC 2916] gi|182669931|gb|EDT81907.1| cysteinyl-tRNA synthetase [Clostridium botulinum NCTC 2916] Length = 465 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 256/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISVIFDLIRDVNTNVTIESSKELVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 TQGVRWKQ 464 >gi|56752435|ref|YP_173136.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 6301] gi|81300471|ref|YP_400679.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 7942] gi|61216122|sp|Q5MZA4|SYC_SYNP6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894954|sp|Q31MM7|SYC_SYNE7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56687394|dbj|BAD80616.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 6301] gi|81169352|gb|ABB57692.1| cysteinyl-tRNA synthetase [Synechococcus elongatus PCC 7942] Length = 478 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 179/496 (36%), Positives = 246/496 (49%), Gaps = 58/496 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F+ + ++ +Y CG TVYD+ H+G+AR IV+D L R L + Sbjct: 1 MTLSLYNTLTRQKQRFEPLQAGSVSLYCCGVTVYDYCHLGHARSYIVWDTLRRYLLWLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N TDIDDKI+ R+RQE + I + TQ + +D RL L Sbjct: 61 --RVRYVQNFTDIDDKILRRSRQE------GTTMQAIADRYTQAYFEDMARLNILEADDY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + LI + G AY A+ ++ F +YG S RK+++ K G Sbjct: 113 PRATHTLDGIQRLIAELEDKGFAYAADGDVYFSVRRFQDYGKLSGRKLEDLKAGASGRVE 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K +P DF LWK + P EP W+SPWG GRPGWHIECSAM LG DIH GG Sbjct: 173 SAEESLKHDPFDFALWKAAKPEEPAWDSPWGPGRPGWHIECSAMVRDRLGDSIDIHVGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL+FPHHENEIAQS A W+HNG +N+ G KMSKS GNF TI +LL+ Sbjct: 233 DLVFPHHENEIAQSEAVTG-HPLARYWLHNGMVNVGGEKMSKSLGNFTTIRQLLDEGGI- 290 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQTST 342 V+RL +L +YR+PIDFT + L + W ++ T Sbjct: 291 ----SPMVLRLFVLQANYRKPIDFTDEALQACQNGWETLQEGLHFGEHWGDRLGWTESVT 346 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PIF 385 + A+ +DLNT +A+ L +LA+E + +LL Sbjct: 347 VDPDLSDRFRMAMDDDLNTPAALAVLFELAKELRRQQNLLIHEGHLDGDAQQLHQHWVTL 406 Query: 386 NASAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A +LG+E E N+ AIE + +R + K F+ AD IR L G L Sbjct: 407 VQLAGVLGLEAEPELAETNELDEAAIEDWIAKRHAARQAKDFAEADRIRHYLADLGITLI 466 Query: 444 DYKNPDNGQRMTRWKQ 459 D +TRW + Sbjct: 467 DQAGG-----ITRWSR 477 >gi|299541906|ref|ZP_07052229.1| cysteinyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] gi|298725644|gb|EFI66285.1| cysteinyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] Length = 466 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 169/489 (34%), Positives = 249/489 (50%), Gaps = 56/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+N+L R+ F ++ ++MYVCGPTVY++ HIGN+RP+IV+D + R +Y Sbjct: 1 MGIQIFNSLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNSRPVIVYDTVRRYFQYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDKII+ A + + + + +T + + +D T L C Sbjct: 61 D--VKFVSNFTDVDDKIIKAANE------LGEEVHELTERFIAAYFEDVTALGCKKADVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ +I IQ +I G+AYE+ ++ + T YG S + +D+ K+G R+ Sbjct: 113 PRVTEHMDDIIQFIQVLIEKGYAYESAGDVYYRTRKFDGYGKLSHQSVDDLKIGARIEAG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K + DF LWK + P E W+SPWG GRPGWHIECS M+ +LG DIH GG DL F Sbjct: 173 EKKDDALDFALWKAAKPGEIFWQSPWGDGRPGWHIECSVMAREHLGDTIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG++N++ KMSKS GNFI +N++ + Sbjct: 233 PHHENEIAQSE-AHNDKTFARYWMHNGYINIDNEKMSKSLGNFILVNDIR-------KQI 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----------------- 345 ++R ML HYR PI+F + A L + + Sbjct: 285 DPQILRFFMLSVHYRHPINFAKDLVEAAASGLERIRTAYNNVKHRLTTTVSLGDHSEEWL 344 Query: 346 ----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAH 390 A+ +D NT +AI L ++AR + + F Sbjct: 345 NKITEQKAHFEEAMDDDFNTANAISVLFEVARIANIYLSEANTCKKVLETFIETFEVLGD 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGIE KE + I QER+ K + F+ +D IR L+++G ILED + Sbjct: 405 VLGIEFAKEEELLDEEIEALL--QERVEARKNRDFARSDEIRDHLQAQGIILEDTR---- 458 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 459 --QGTRWKR 465 >gi|57233567|ref|YP_180814.1| cysteinyl-tRNA synthetase [Dehalococcoides ethenogenes 195] gi|109894896|sp|Q3ZAD5|SYC_DEHE1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57224015|gb|AAW39072.1| cysteinyl-tRNA synthetase [Dehalococcoides ethenogenes 195] Length = 458 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 173/477 (36%), Positives = 241/477 (50%), Gaps = 42/477 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++ ++MYVCG T HIG+A I FDV+ R L Y Sbjct: 1 MKIYNTLSGKLEEFVPLEDGKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLSYKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII +A + S + +N F+ L + PR Sbjct: 59 RVKYIQNFTDIDDKIIAKANAQ------GIEPSTLAERNIGVFLDAMAALNITPADYYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++I ++ +I G+AYEA + + YG S R +++ G R+ Sbjct: 113 ATQEVPKIIEMVSGLIEKGYAYEAGGSVYLRVQKVEGYGKLSHRTLEQMMAGARIEPGEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 173 KEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + A Sbjct: 233 HENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALSR-------YSA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------DPAVL 352 +R+ +L + YR P+ ++ + L AE + QT+ + Sbjct: 286 DALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARQDNPRLQEINVDVKTYRERFT 345 Query: 353 SALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFNASAHILGIEV--CKEHLNK 403 + ND NT +A+ + L RE K+ +F A ILG+ + + + Sbjct: 346 QYMDNDFNTSAALATIFDLGRELNRIEAEGGKSTQGQELFKELAGILGLSLIIAEPTTSA 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + + I+ L++ R L K++ AD IR L++ G +LED T WK K Sbjct: 406 DAAPFIDMLIELRKDLRLAKQYQLADKIRTSLDAAGILLEDS------AGGTIWKIK 456 >gi|315274656|ref|ZP_07869496.1| cysteinyl-tRNA synthetase [Listeria marthii FSL S4-120] gi|313615713|gb|EFR89001.1| cysteinyl-tRNA synthetase [Listeria marthii FSL S4-120] Length = 471 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 170/487 (34%), Positives = 252/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L T Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKATVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQMINTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG+ DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGETIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|237741373|ref|ZP_04571854.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 4_1_13] gi|294784133|ref|ZP_06749434.1| cysteine--tRNA ligase [Fusobacterium sp. 3_1_27] gi|229430905|gb|EEO41117.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 4_1_13] gi|294488203|gb|EFG35548.1| cysteine--tRNA ligase [Fusobacterium sp. 3_1_27] Length = 473 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 180/492 (36%), Positives = 272/492 (55%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKKDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSKKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENERAQSKCGCGG-TFARYWMHNGYININGEKMSKSSGSFVLLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P++F+ L + + L + T Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDAELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 +K I+ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEIEAKFIEAMDEDFNTAQALGYIFELVKAVNKTLDEVNISKKGLEVIDEVYSYLVM 405 Query: 390 ---HILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 MIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|311280587|ref|YP_003942818.1| cysteinyl-tRNA synthetase [Enterobacter cloacae SCF1] gi|308749782|gb|ADO49534.1| cysteinyl-tRNA synthetase [Enterobacter cloacae SCF1] Length = 461 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 179/482 (37%), Positives = 257/482 (53%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NT+ R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTMTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + + + + + KD L L P ++PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GEDFVGLVDRMIIEMHKDFDALNILRPDNEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I + + +I GHAY A+ +++F S P YG SR+ +D+ + G RV Sbjct: 114 ATHHIPEIIEITERLIERGHAYVADNGDVMFSVPSDPTYGELSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKAGEPAWASPWGEGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNTWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDASAAAAGGEAFEARFREA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCK-------- 398 + +D NT A L +ARE + + + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKGEDAQAASAMAAHLRKLSGVLGLLEQDPETFLQGG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED G + T W+ Sbjct: 406 AQADDSEVAEIESLIQQRLDARKAKDWAAADAARDRLNEMGIVLED------GPQGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|194289323|ref|YP_002005230.1| cysteinyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424] gi|229558628|sp|B3R4D1|SYC_CUPTR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|193223158|emb|CAQ69163.1| cysteine tRNA synthetase [Cupriavidus taiwanensis LMG 19424] Length = 462 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 181/481 (37%), Positives = 254/481 (52%), Gaps = 45/481 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR Sbjct: 2 QPLNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYV+NITDIDDKII RA + + I +T++ Q +D L + P H+ Sbjct: 62 E--VTYVQNITDIDDKIIRRA------VENGETIGELTTRFIQYMHEDAAALGVIRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+++PQM+ +I + G AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATDYVPQMLDMIGKLEAKGLAYQASDGDVNYSVRKFDGYGKLSGKSLEDLRAGERVSA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W+S WG GRPGWHIECSAMS LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKSAKASEPPESKWDSKWGAGRPGWHIECSAMSCALLGEHFDIHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQSEGASG-KPFVNLWMHNGFVRINDEKMSKSLGNFFTIREVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 +++ A V+R +L HYR P++++ L +A L++ Sbjct: 287 -KAYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKDSQPGGCAVDWDEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIEVCKEH------ 400 A+ +D NT A+ L LA E + A LG+ H Sbjct: 346 KRFAEAMGDDFNTPIAMSVLFDLASEINRTGSTAAARQLKGLAGTLGLLERDPHTFLQGG 405 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + IEKL+ R + F+ AD IR QL G +LED T W+ Sbjct: 406 KSADGPSPDEIEKLIAARKAAKAERNFAEADRIRAQLLEAGIVLEDKPGGA-----TEWR 460 Query: 459 Q 459 + Sbjct: 461 R 461 >gi|332685571|ref|YP_004455345.1| cysteinyl-tRNA synthetase [Melissococcus plutonius ATCC 35311] gi|332369580|dbj|BAK20536.1| cysteinyl-tRNA synthetase [Melissococcus plutonius ATCC 35311] Length = 469 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 177/492 (35%), Positives = 247/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I IYNTL RK F I+ + +RMYVCGPTVY++ HIGNAR I FD + R L Y Sbjct: 2 ITIYNTLTRKKEPFIPIEENKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TDIDDKII A++ + ++S+ F +D+ L T PR Sbjct: 60 TVNYVSNFTDIDDKIIRAAKE------MKITAEAVSSRFIHAFEEDSNALNIQPATCHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 HIP ++ IQ +I G+AYEA ++ + T YG S + ID+ ++G E Sbjct: 114 VMTHIPDILAFIQQLIEKGYAYEAQGDVYYRTYKFKQYGELSHQSIDDLEIGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK++ P E W+SPWG GRPGWHIECS M+ +LG+ DIHGGG DL Sbjct: 174 RSLKEDPLDFALWKKAKPGEISWDSPWGAGRPGWHIECSVMAMKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + N W+HNG++ + KMSKS GNF+T++EL++T Sbjct: 234 FPHHENEIAQSEAQSG-KTFVNYWMHNGYVTVGENDEKMSKSLGNFVTVHELIQT----- 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 V+R M T YR PI ++ + EA L + Sbjct: 288 --IDPQVLRFFMSTTQYRHPIHYSQTTIKEAASNLKRLQNAFNNLTFRKNDTLEQLTEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNA 387 + + + A+ +D NT + I +++LA+ + + F Sbjct: 346 NDLETLNLFKGQFIQAMDDDFNTANGITIVYELAKWMNLYSERKAVSKKVIEKTLTYFTQ 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L I I++L+ ER K F +D IR L +G +LED K Sbjct: 406 WLAIFGIFFSSEVL---IDQDIDQLINEREQARKEGNFGRSDEIRDLLNQQGIVLEDTK- 461 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 462 -----QGTRWRR 468 >gi|229824608|ref|ZP_04450677.1| hypothetical protein GCWU000282_01955 [Catonella morbi ATCC 51271] gi|229785979|gb|EEP22093.1| hypothetical protein GCWU000282_01955 [Catonella morbi ATCC 51271] Length = 480 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 171/493 (34%), Positives = 248/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ F+ I + YVCGPTVY++ HIGNAR + FD + R +Y + Sbjct: 9 IQVYNTLTRQKEVFRPIKEGQVAFYVCGPTVYNYIHIGNARSAVAFDTIRRYFQYRGYQ- 67 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A E I K F +DT +L A T PR Sbjct: 68 -VNYVSNFTDVDDKIIKAAIAE------GSTPEAIADKYIAAFKEDTGQLNIQAATVHPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 +I ++I +Q +I G+AYE+ ++ F T S +YG S + +++ +G Sbjct: 121 VMENIEEIIAFVQTLIEKGYAYESEGDVYFKTESFKDYGHLSDQSLEDLLVGASERLDQA 180 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K NP DF LWK + P E W+SPWG GRPGWHIECS M++ YLG DIHGGG DL Sbjct: 181 VAERKANPLDFALWKTAKPGEIAWDSPWGPGRPGWHIECSVMATKYLGDTIDIHGGGQDL 240 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A+ W+HNGF+ + + KMSKS GNF+ + +LL Sbjct: 241 TFPHHENEIAQSEACTG-HTFAHYWLHNGFVTIGKQDEKMSKSLGNFVLLRDLLA----- 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 ++ VIR + THYR P+ + +TEA+ ++K + Sbjct: 295 --AYDPMVIRYMLATTHYRRPLRYDEAVITEAQANVNKLREAIRRLKHRQEQASADLEGH 352 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFN 386 I ++A+ +D N + I AL L + + DL + + Sbjct: 353 ETWLAEINGIQEQFVTAMDDDFNASNGITALFDLVKSLNRYLDLELVSQVVLSLYDKVLH 412 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + G+++ E + +I IE L++ER K F+ +D IR QL+ +G +L+D Sbjct: 413 DLLAVFGLDL--EDKSNSIDQEIEALIEERRQARANKDFARSDAIRDQLKEQGILLDDT- 469 Query: 447 NPDNGQRMTRWKQ 459 + T WK+ Sbjct: 470 -----PQGTVWKR 477 >gi|255318181|ref|ZP_05359420.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262379610|ref|ZP_06072766.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SH164] gi|255304727|gb|EET83905.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262299067|gb|EEY86980.1| cysteinyl-tRNA synthetase [Acinetobacter radioresistens SH164] Length = 473 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 193/488 (39%), Positives = 274/488 (56%), Gaps = 57/488 (11%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 +YN+ +RK EF +I MYVCG TVYD+ HIG+AR M+ FD + R LR E V Sbjct: 6 LYNSEQRKKVEFVPRKAGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWE--V 63 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YVRNITDIDDKII+RA + + I +T + Q +D RL CLAP PRAT Sbjct: 64 KYVRNITDIDDKIIKRANEN------GETIQALTDRFIQAMNEDAHRLGCLAPDEAPRAT 117 Query: 127 NHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RVPEKY 183 +I QM +I ++ +G AY A N ++ F YG S RK+D+ + G RV + Sbjct: 118 EYIDQMQNMIGKLVDNGSAYPATNGDVYFQVEQFNKYGRLSGRKLDDMQAGASDRVDVEV 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP W SPWG+GRPGWHIECSAMS+ LG FDIHGGG DL+FP Sbjct: 178 DKKHPFDFVLWKHAKENEPFWNSPWGKGRPGWHIECSAMSTCCLGNHFDIHGGGSDLLFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E+ N W+H GF+N++G KMSKS GNF TI +++E + Sbjct: 238 HHENEIAQSEAATG-EQYVNYWMHVGFINVDGEKMSKSLGNFFTIRDVME-------KFH 289 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------KGIID-------PA 350 VIR ++ +HYR P++F+ L EA+ L+++ + + + D Sbjct: 290 PEVIRYFIVSSHYRSPVNFSDVALKEAKTALTRFYHAFKAYQQQFNEELTDHFSQIHLER 349 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK-----NHDLLPIF----NASAHILGI------E 395 +A+ +D NT A+ L +LA+E + N + +F +ILG+ + Sbjct: 350 FNAAMCDDFNTAEAMAVLFELAKELNRALKEENAEQAKVFYSTLRHLTNILGLVQHNVDD 409 Query: 396 VCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 + + + IE+L+Q+R+ K K F+ AD IR+ L ++G +LED + Sbjct: 410 FLRSDIGQEALGLSESEIEELIQQRVDAKKAKDFTKADSIRQNLLNQGVVLEDTR----- 464 Query: 452 QRMTRWKQ 459 + T W++ Sbjct: 465 -QGTLWRR 471 >gi|269122241|ref|YP_003310418.1| cysteinyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] gi|268616119|gb|ACZ10487.1| cysteinyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] Length = 465 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 183/477 (38%), Positives = 259/477 (54%), Gaps = 46/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K YNTL + EF+ I+P ++MYVCGPTVY++ HIGNARP++VFD+L R R+ Sbjct: 1 MKFYNTLTNQTEEFKPIEPGKVKMYVCGPTVYNYIHIGNARPIVVFDILARYFRHKNY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDK+I +A +E + I + + F++DT +L A +P+ Sbjct: 59 VVEYVQNFTDIDDKMINKANEE------GKTVREIADRYIEAFLEDTKKLNISADIIRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I MI I+ +I G+AYE N +++FD + YG S +K D+ + G R+ + Sbjct: 113 ATEYIEDMIITIEALIDKGYAYELNGDVLFDVTKYSEYGKLSNQKTDQLEAGARIEVGEN 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK EP W++PWG GRPGWHIEC+AMS Y G FDIHGGG DLIFPH Sbjct: 173 KRNPQDFVLWKNKKKGEPFWKAPWGEGRPGWHIECTAMSHKYFGLNFDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ CA AN W+HNG++ L+G KMSKS GNF + ++LE + Sbjct: 233 HENEIAQARCAYGGN-FANYWLHNGYIQLDGEKMSKSKGNFFLLRDVLE-------EFDG 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------------STSKG 345 V R + THYR+PI+F+ + + A+ L K S Sbjct: 285 NVFRWFLAGTHYRKPINFSKEDMLAAKAALEKINGALLRAKDFIIENNTKYDNILEGSIK 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGI 394 A+ +DLNT A+ +H+ RE K D + I + A++LGI Sbjct: 345 EFSEKFDQAMEDDLNTPLAVSLIHEFLREINKFIDNYGKSVIIKEAVAVINDRMANVLGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 E+ + L S ++ + R K F +D IR +L G L+D K+ Sbjct: 405 ELKESGLEDLSSSLLDLFIYIRKEARSEKNFKLSDLIRDKLSELGIELKDNKDGTTS 461 >gi|315640330|ref|ZP_07895447.1| cysteine--tRNA ligase [Enterococcus italicus DSM 15952] gi|315483992|gb|EFU74471.1| cysteine--tRNA ligase [Enterococcus italicus DSM 15952] Length = 468 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 173/493 (35%), Positives = 253/493 (51%), Gaps = 63/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL RK FQ I+ ++MYVCGPTVY++ HIGN R + FD + R Y + Sbjct: 2 IQIYNTLTRKKEVFQPIEEGKVKMYVCGPTVYNYIHIGNGRSTVSFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A++ N+ + ++ F +DT L PR Sbjct: 61 -VTYVSNFTDVDDKIIHAAKE------ANETALEVANRFIAAFYEDTEALHVKKADINPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +HIP +I I +I G+AYEA ++ + T YG S + IDE ++G E Sbjct: 114 VMDHIPDIIDFISVLINKGYAYEAQGDVYYRTRKFTKYGQLSDQSIDELEIGASQRTGQE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W SPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQIKEDPLDFALWKAAKADEISWSSPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + AN W+HNG++ + + +KMSKS GNF+T++EL+ Sbjct: 234 FPHHENEIAQSEANTG-KPFANYWMHNGYVTIGEDDQKMSKSLGNFVTVHELV------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------------------ 341 + V+R + T YR PI ++ L EA L + T Sbjct: 286 KEVDPKVLRFFLATTQYRRPIRYSQTTLKEAATNLQRLKNTVDNVVFRQEKAVAQLASDA 345 Query: 342 ---TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 T ++ ++ + +D N + I ++LA+ + L + Sbjct: 346 DKLTDLAKLEEQFITEMDDDFNAANGITVTYELAKWLNIYLEQSDVSQAVLAQGLSQLTS 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GIE N+ + IE+L+++R K + F+ +D IR QL+ +G +LED Sbjct: 406 WLEIFGIEF----TNELVDADIEQLIEQRNQARKDRDFARSDEIRDQLKEQGIVLEDT-- 459 Query: 448 PDNGQRMTRWKQK 460 + TRW+++ Sbjct: 460 ----AQGTRWRRE 468 >gi|257058375|ref|YP_003136263.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8802] gi|256588541|gb|ACU99427.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8802] Length = 484 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 171/504 (33%), Positives = 257/504 (50%), Gaps = 68/504 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ + ++ IRMY CG TVYD+ H+G+AR +V+DV+ R L++ Sbjct: 1 MTLTVYNTLTRRKEPLETLETGKIRMYCCGITVYDYCHLGHARTCMVWDVVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKI+ RARQE + ++ + + + +D RL Sbjct: 61 E--VQYIQNFTDIDDKILNRARQE------GTTMEAVSDRFIEAYFEDMERLHVQKADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----- 177 PRAT+ + + L+ + G+AY++N ++ + +YG S RK+++ + G Sbjct: 113 PRATHTLNGIKRLVSELEAKGYAYQSNGDVYYSVRHFKDYGKLSGRKLEDLQAGASGRVE 172 Query: 178 -RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 + PE KK+P DF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH G Sbjct: 173 VQDPEAAKKKDPFDFAVWKAAKPGEPSWDSPWGQGRPGWHIECSAMVRERLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W+HNG + +EG KMSKS GNFITI +LL+ Sbjct: 233 GSDLIFPHHENEIAQSEAATG-KPLARYWLHNGMVKVEGEKMSKSLGNFITIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 +RL +L HYR+P+DFT + L A + Sbjct: 289 ----KVDPMAMRLFILQAHYRKPVDFTDEALEAATNGWHTLKEGLLFGYNHGKQLNFTAS 344 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL--------------- 382 + + A+ +D N + L ++A+E K ++L Sbjct: 345 PPHPLTSSPLTQRFQQAVDDDFNFAGGLAILFEIAKELRKEGNILVHQGHTETSPQVLEE 404 Query: 383 --PIFNASAHILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 A +LG+ EV +E N IE+L+++R I + K ++ D +R +L Sbjct: 405 QWRTLVELAGVLGLETDISEVQEEVGNGLSDAEIEELIEQRKIARQNKNYAEGDRLRDEL 464 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 +++G IL D +T W + Sbjct: 465 KNQGIILVDQPGG-----ITTWHR 483 >gi|158423408|ref|YP_001524700.1| cysteinyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] gi|172047950|sp|A8I4X6|SYC_AZOC5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|158330297|dbj|BAF87782.1| cysteinyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] Length = 462 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 217/475 (45%), Positives = 284/475 (59%), Gaps = 34/475 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++YNTL R F+ +DP+ +R+YVCGPTVYD AHIGNARP+IVFDVL+RLLR YG Sbjct: 1 MELRLYNTLTRSKDAFRPLDPNLVRLYVCGPTVYDHAHIGNARPVIVFDVLFRLLRRLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YVRNITD+DDKI RA + +I +T + F DT L CL P + Sbjct: 61 ADHVRYVRNITDVDDKINARAAERS------ISIRELTEETYAWFRDDTAALGCLRPDVE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI +M LI+ ++ GHAY A ++F S+P YG SRR +DE G RV Sbjct: 115 PRATEHILEMQALIERLVASGHAYVAEEHVLFHVPSMPEYGKLSRRPLDEMLNGARVDVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF+LWK ST +PGW SP G GRPGWHIECSAMS +LG+ FDIHGGG+D Sbjct: 175 PFKRDPMDFVLWKPSTEGQPGWPSPCGIATPGRPGWHIECSAMSWRHLGETFDIHGGGID 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQS CA A +W+HNGFL +EG KMSKS GNF+TI ELL Sbjct: 235 LVFPHHENEIAQSRCAFDSGSMAQVWMHNGFLLVEGEKMSKSLGNFVTIRELLTD----- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPAVL 352 WP V+RLAML THYR+PI++T Q + A L KW + + + + Sbjct: 290 --WPGEVLRLAMLSTHYRQPINWTRQGIGFAAKTLDKWYRVIGDVEAETGEGNPFESEIA 347 Query: 353 SALYNDLNTVSAIQALHKLARES---TKNHDLLPIFNASAHILGIEVCKE--------HL 401 L +DLN+ SAI LH LA + + L F ++A+++G+ E Sbjct: 348 DRLGDDLNSPSAITHLHHLADVAEHEDASSALKRRFKSAANLMGLLHETETEWRARQRAA 407 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 AI L+ +R K + F++AD+IR+QL S+G +L D K+ +TR Sbjct: 408 VSVDPDAIAALIADRNAARKARDFATADHIREQLASQGIVLMDNKDGTTSWELTR 462 >gi|147668707|ref|YP_001213525.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. BAV1] gi|187629809|sp|A5FP90|SYC_DEHSB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146269655|gb|ABQ16647.1| cysteinyl-tRNA synthetase [Dehalococcoides sp. BAV1] Length = 457 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 176/477 (36%), Positives = 242/477 (50%), Gaps = 42/477 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL K+ EF ++ ++MYVCG T HIG+A I FDV+ R L Y Sbjct: 1 MKIYNTLSGKLEEFVPLENDKVKMYVCGITPQSEPHIGHAMSYINFDVIRRYLTYKGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TDIDDKII +A + S + +N F+ L + PR Sbjct: 59 RVKYIQNFTDIDDKIIAKANAQ------GIEPSTLAERNIGVFLDAMAALNITPADYYPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +P++I ++ +I G+AY + + + YG S R +++ G RV Sbjct: 113 ATQEVPKIIEIVSGLIDKGYAYAVDGSVYLRVQKVDGYGKLSHRTLEQMMAGARVEIDEE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+ P DF LWK + P EP WESPWG GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 173 KEYPMDFALWKATKPGEPSWESPWGLGRPGWHIECSAMSLRYLGEQIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS C ++ W+HNG L L KMSKS GN +TI E L + A Sbjct: 233 HENEIAQSECFSGVKPFVKYWLHNGLLKLGEEKMSKSLGNLVTIKEALSR-------YSA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------PAVL 352 +R+ +L + YR P+ ++ + L AE + QT+ K Sbjct: 286 DALRIFVLSSSYRNPLTYSEEALEAAEKGAERLRQTAARKDNPQFKETTVDTKAYRERFT 345 Query: 353 SALYNDLNTVSAIQALHKLAREST-------KNHDLLPIFNASAHILGIE--VCKEHLNK 403 + ND NT +A+ + L+RE K+ D +F A ILG+ V + Sbjct: 346 QYMDNDFNTSAALATIFDLSRELNRIEGEAGKSTDGQKLFKELADILGLSLIVAESKTGT 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +++ IE L++ R L K++ AD IR L++ G +LED T WK K Sbjct: 406 DVAPFIELLIELRKDLRVAKQYQLADKIRTSLDTAGILLEDS------AGGTVWKVK 456 >gi|46906472|ref|YP_012861.1| cysteinyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. F2365] gi|47094540|ref|ZP_00232204.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|47097639|ref|ZP_00235159.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|217965673|ref|YP_002351351.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|226222868|ref|YP_002756975.1| cysteinyl-tRNA synthetase [Listeria monocytogenes Clip81459] gi|254825717|ref|ZP_05230718.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|254853494|ref|ZP_05242842.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|254900580|ref|ZP_05260504.1| cysteinyl-tRNA synthetase [Listeria monocytogenes J0161] gi|254913469|ref|ZP_05263481.1| cysteinyl-tRNA synthetase [Listeria monocytogenes J2818] gi|254932458|ref|ZP_05265817.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HPB2262] gi|254937950|ref|ZP_05269647.1| cysteinyl-tRNA synthetase [Listeria monocytogenes F6900] gi|254991761|ref|ZP_05273951.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-064] gi|255520317|ref|ZP_05387554.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-175] gi|290892620|ref|ZP_06555613.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi|300764636|ref|ZP_07074628.1| hypothetical protein LMHG_11118 [Listeria monocytogenes FSL N1-017] gi|61216246|sp|Q724H3|SYC_LISMF RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254781684|sp|B8DF15|SYC_LISMH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|259511837|sp|C1KYH2|SYC_LISMC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|46879736|gb|AAT03038.1| cysteinyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. F2365] gi|47013983|gb|EAL04996.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|47017086|gb|EAL07955.1| cysteinyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|217334943|gb|ACK40737.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|225875330|emb|CAS04027.1| cysteinyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606866|gb|EEW19474.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|258610559|gb|EEW23167.1| cysteinyl-tRNA synthetase [Listeria monocytogenes F6900] gi|290557929|gb|EFD91450.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi|293584014|gb|EFF96046.1| cysteinyl-tRNA synthetase [Listeria monocytogenes HPB2262] gi|293591477|gb|EFF99811.1| cysteinyl-tRNA synthetase [Listeria monocytogenes J2818] gi|293594961|gb|EFG02722.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|300514743|gb|EFK41798.1| hypothetical protein LMHG_11118 [Listeria monocytogenes FSL N1-017] gi|307569778|emb|CAR82957.1| cysS [Listeria monocytogenes L99] gi|328467850|gb|EGF38890.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 1816] gi|332310650|gb|EGJ23745.1| Cysteinyl-tRNA synthetase [Listeria monocytogenes str. Scott A] Length = 471 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L T Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKATVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|227529487|ref|ZP_03959536.1| cysteinyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540] gi|227350572|gb|EEJ40863.1| cysteinyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540] Length = 472 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 172/491 (35%), Positives = 257/491 (52%), Gaps = 59/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LTIYNTLTRKQEEFKPQTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K Q F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAHEQ------GITVPQLADKYIQAFMEDTKAINIEPATMHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +IP++I IQ +I G+AYE + ++ + +YG S + ID+ ++G Sbjct: 114 ATENIPEIIKFIQGLIDKGYAYEKDGDVYYRARKFKDYGQLSGQSIDDLEVGASEHVSDD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIHGGG DL Sbjct: 174 EINKKEDPMDFALWKAAKPGEINWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + W+HNGF+ + + KMSKS NFIT+++++ Sbjct: 234 EFPHHENEIAQSEAKTGQK-FVRYWMHNGFVTIGKDNEKMSKSLHNFITVHDII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDP- 349 + V+R M T YR PI ++ L +A+ L + ++ DP Sbjct: 287 -KQVDPQVLRFFMATTQYRRPIQYSEDNLIDAKNNLEHIQTAFDNLTYRQKDAQDGADPV 345 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 + A+ ND+N + I +++L + + ++ + + Sbjct: 346 VTQKLADFKQSFTEAMDNDINVQNGITVVYELVKFANVYAQQKAVKAAALTEMKDLISEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+++ N+ I+ L+ ER K K F+ +D IR +L+++G ILED Sbjct: 406 VSIFGVKLAS-SDNELNDEHIQALIDERNEARKNKDFARSDQIRDELKAQGIILEDT--- 461 Query: 449 DNGQRMTRWKQ 459 + TR+K+ Sbjct: 462 ---PQGTRFKR 469 >gi|325686898|gb|EGD28923.1| cysteine--tRNA ligase [Streptococcus sanguinis SK72] Length = 450 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 170/469 (36%), Positives = 246/469 (52%), Gaps = 36/469 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + K F +D T L + T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKKE------GITPKEVADKYIAAFHEDVTALGVKSAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PR + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 QHPRVIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGR 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA----- 350 V+R HYR+PI+FT + + +A L T G D A Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYDQPFTGQADSAQFQAF 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKN 404 +A+ D N + I + +LA+ ++ + GI +E L+ + Sbjct: 345 LDKFTAAMDEDFNAANGITVVFELAKWINSGNYTAEVKAALAELLEVFGIVFVEEVLDAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + + F++AD IR +L ++G L D K+ R Sbjct: 405 ----IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTKDGVRWTR 449 >gi|116871622|ref|YP_848403.1| cysteinyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460673|sp|A0AF38|SYC_LISW6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116740500|emb|CAK19620.1| cysteinyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 471 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLTREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L + Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPDEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|257418802|ref|ZP_05595796.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T11] gi|257160630|gb|EEU90590.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T11] Length = 470 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEACKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|325697466|gb|EGD39352.1| cysteine--tRNA ligase [Streptococcus sanguinis SK160] Length = 450 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 170/469 (36%), Positives = 246/469 (52%), Gaps = 36/469 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + K F +D + L T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PR + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 QHPRVIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGR 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA----- 350 V+R HYR+PI+FT + + +A L T G D A Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVF 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKN 404 +A+ D N + I + +LA+ D+ F + GI +E L+ + Sbjct: 345 LDKFTAAMDEDFNAANGITVVFELAKWINSGNYTADIKAAFAELLEVFGIVFVEEVLDAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + + F++AD IR +L ++G L D K+ R Sbjct: 405 ----IERLIEERQVARGNRDFATADRIRDELAAQGIKLLDTKDGVRWTR 449 >gi|291287685|ref|YP_003504501.1| cysteinyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290884845|gb|ADD68545.1| cysteinyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 479 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 182/484 (37%), Positives = 258/484 (53%), Gaps = 55/484 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL K EFQ + N+++YVCG TVYD HIG+AR VFDV+ R L + Sbjct: 2 LKVFNTLSNKKEEFQPLQKDNVKIYVCGVTVYDLCHIGHARSSGVFDVIRRYLMFKGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TDIDDKII+R+ ++ + + + D L L P H P+ Sbjct: 61 -VTFVKNFTDIDDKIIKRSNEKQMDW------RELAANFIAEHDADMDSLNILRPDHTPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I QMI + + +I G AYE+N +I + YG S RK+++ G R+ Sbjct: 114 ATDYIKQMIQMCETLIEKGFAYESNGDIYYRVQKFEEYGKLSHRKLEDMMAGARIEVSVK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK S P EP WESPWG+GRPGWHIECS MS LG FDIHGGG DL+FPH Sbjct: 174 KENPYDFVLWKASKPGEPSWESPWGQGRPGWHIECSVMSEDLLGLPFDIHGGGKDLVFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A + WIHNGF+N+ KMSKS GNF TI ++L + + A Sbjct: 234 HENEIAQSEAACGCM-FSKYWIHNGFVNVNQEKMSKSLGNFFTIRDVL-------KEFDA 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------------------QTSTSK 344 ++R ++ THYR +DF+ L EAE L++ + K Sbjct: 286 EIVRYFLMTTHYRSALDFSQDHLLEAEKSLNRIYTMLDEISRFNAGKKGVDITKEAEKMK 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTK--------------NHDLLPIFNASAH 390 +A+ +D NT A+ A+ ++ RE+ + + +F Sbjct: 346 ETFMDKFQTAMDDDFNTPEALAAMFEVIRETNRLLGSKPNKISFPALQEAVQDVFKVILD 405 Query: 391 ILGIE--VCKEHLNKNISIAIEKL---VQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LGI ++ N+SI+ E+L +Q+R K K F AD IR++L+ +G L D Sbjct: 406 VLGIVKYTPEKWFRINLSISEEELRQKIQDRADAKKDKNFELADSIRQELKQQGIELLDT 465 Query: 446 KNPD 449 + Sbjct: 466 IDGT 469 >gi|119510000|ref|ZP_01629141.1| cysteinyl-tRNA synthetase [Nodularia spumigena CCY9414] gi|119465324|gb|EAW46220.1| cysteinyl-tRNA synthetase [Nodularia spumigena CCY9414] Length = 477 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 173/498 (34%), Positives = 247/498 (49%), Gaps = 62/498 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F ++P ++MY CG TVYD+ H+G+AR IV+DV+ R L++ Sbjct: 1 MTLTLYNTLTRRQEAFATVEPGKVKMYYCGVTVYDYCHLGHARACIVWDVVRRYLQFIGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKI++R+R+EH ++ + + + +D RL Sbjct: 61 E--VRYIQNFTDIDDKILKRSREEH------SSMEAVAERYINAYFEDMGRLGIKPADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--- 179 PRAT+ + + LI + G AY A+ ++ + YG S RK+++ + G Sbjct: 113 PRATHTMNGIQRLIHELENKGFAYPADGDVYYAVRQFNEYGKLSGRKLEDMQAGASERVQ 172 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 PE KK+P DF LWK + P EP WES WG GRPGWHIECSAM LG DIH G Sbjct: 173 VEDPEYQKKKDPFDFALWKAAKPGEPAWESSWGAGRPGWHIECSAMVRDRLGDTIDIHAG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS + A W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 233 GADLIFPHHENEIAQSEAVTG-KPLATYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------------ST 342 R +RL +LM YR+PIDFT + A + Sbjct: 289 ---RGVEPMAVRLFVLMAQYRKPIDFTDDAIAAATNGWHTLKEGLLFGYEYGGVGSGEKL 345 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------PIF 385 + I A+ +D N + L +LA+E + +++ Sbjct: 346 TSEIHIQRFQEAVNDDFNFPGGLAVLFELAKELRRQGNIIVHQGKTETSPEELQKQWQTL 405 Query: 386 NASAHILGIEVCKEHLNKNI----SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 A + G+ E N I IE L+Q+R K K F+ +D IR QL+++G Sbjct: 406 VILAEVFGLVAQPEAENAIIEGLSDAEIENLIQQRQAARKSKNFAESDRIRDQLQAEGIT 465 Query: 442 LEDYKNPDNGQRMTRWKQ 459 L D ++ TRW + Sbjct: 466 LIDSRD------GTRWHR 477 >gi|148381443|ref|YP_001255984.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|153933894|ref|YP_001385818.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|153937063|ref|YP_001389225.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. Hall] gi|187629799|sp|A7FZ91|SYC_CLOB1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187629801|sp|A5I7M8|SYC_CLOBH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148290927|emb|CAL85063.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|152929938|gb|ABS35438.1| cysteinyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|152932977|gb|ABS38476.1| cysteine--tRNA ligase [Clostridium botulinum A str. Hall] Length = 465 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 175/488 (35%), Positives = 256/488 (52%), Gaps = 57/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL K EF + P ++MYVCGPTVY+F HIGNAR +VFD + R L Y + Sbjct: 1 MKVYNTLTNKKEEFLTLVPGEVKMYVCGPTVYNFFHIGNARTFVVFDTIRRYLEYRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +++N TDIDDK+I+RA +E + + + +++ KD L T PR Sbjct: 60 -VKFIQNFTDIDDKMIKRANEE------GSTVKELGDRFIKEYYKDADDLNIERATKNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + ++I + ++I G+AYE + ++ F T +YG S + ++E ++G R+ Sbjct: 113 ATEFMEEIIKFVSDLIEKGYAYEIDGDVYFSTKKFNSYGKLSGQNLEELQLGARINVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF +WK P EP WESPWG GRPGWHIECS M+ + LG+ DIH GG DL FPH Sbjct: 173 KKDPMDFAIWKSQKPGEPAWESPWGMGRPGWHIECSCMAYNLLGETIDIHAGGSDLSFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS ++ A W+H+ F+N+ +KMSKS NF T E+LE + A Sbjct: 233 HENEIAQSEARTG-KQFAKYWLHSAFVNVNNQKMSKSLNNFFTAREILE-------KYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------- 351 V+R+ ML HYR I+F+++ L + L + + + + V Sbjct: 285 DVLRMFMLSGHYRTQINFSMELLDSTKAALDRLYNSINNLENLLDEVKNEELRDEELEYK 344 Query: 352 ----------LSALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAHI 391 + + +D NT AI + L R+ N + L + Sbjct: 345 NELQKYKEKYIEKMDDDFNTADAISIIFDLIRDVNTNVTIESSKELVKYTLDLIRELGSP 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 LGI +E ++ IEKL++ER K K ++ AD IR L+ +G +LED Sbjct: 405 LGI--LQESTKASLEEEIEKLIEERQKARKEKNWALADKIRDNLKERGIVLEDT------ 456 Query: 452 QRMTRWKQ 459 + RWKQ Sbjct: 457 PQGIRWKQ 464 >gi|256761895|ref|ZP_05502475.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T3] gi|256683146|gb|EEU22841.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T3] Length = 470 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAVANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|256855023|ref|ZP_05560384.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T8] gi|256709536|gb|EEU24583.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T8] Length = 470 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 249/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEELG---DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|154248635|ref|YP_001419593.1| cysteinyl-tRNA synthetase [Xanthobacter autotrophicus Py2] gi|229558802|sp|A7IPJ0|SYC_XANP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154162720|gb|ABS69936.1| cysteinyl-tRNA synthetase [Xanthobacter autotrophicus Py2] Length = 462 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 218/475 (45%), Positives = 283/475 (59%), Gaps = 34/475 (7%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++YNTL R + +DP+N+RMYVCGPTVYD AHIGNARP+IVFDVL+RLLR YG Sbjct: 1 MELRLYNTLTRSKDTLRPLDPANVRMYVCGPTVYDHAHIGNARPVIVFDVLFRLLRRLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITD+DDKI RA + I +T + + F +DT L CL PT + Sbjct: 61 EGHVKYVRNITDVDDKINARAAER------GITIRDLTEETYRWFREDTAALNCLRPTVE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI +M LI++++ GHAY A ++F S+P+YG SRR +DE G RV Sbjct: 115 PRATEHIAEMRTLIESLVASGHAYVAEEHVLFHVPSMPDYGRLSRRPLDEMVAGARVDVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 +K++P DF+LWK S PGW SP G GRPGWHIECSAMS +LG+ FDIHGGG+D Sbjct: 175 PYKRDPMDFVLWKPSEAGIPGWPSPCGIATPGRPGWHIECSAMSWRHLGETFDIHGGGID 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L+FPHHENEIAQS CA A +W+HNGFL LEG KMSKS GNF+TI ELL Sbjct: 235 LVFPHHENEIAQSRCAFHTGVMAQMWMHNGFLMLEGEKMSKSLGNFVTIRELLA------ 288 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-------IDPAVL 352 WP V+RLAML THYR+PI++T Q L A L KW + + + Sbjct: 289 -EWPGEVLRLAMLSTHYRQPINWTRQGLGFAAKTLDKWYRIIGEAEAETGEGNPFETEIA 347 Query: 353 SALYNDLNTVSAIQALH---KLARESTKNHDLLPIFNASAHILGI--------EVCKEHL 401 L +DLNT S I LH ++A + L F +A++LG+ ++ Sbjct: 348 DRLADDLNTPSVITHLHHLAEVAEHEEASSALRRRFKGAANLLGLLGDTETGWRARQKEA 407 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 I L+ +RL K K F AD IR++L ++G +L D K+ ++R Sbjct: 408 IALDEGVIAGLIADRLAARKAKDFKRADQIREELAAQGVVLMDNKDGTTSWEVSR 462 >gi|325567615|ref|ZP_08144282.1| cysteine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] gi|325159048|gb|EGC71194.1| cysteine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] Length = 470 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 170/493 (34%), Positives = 249/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ FQ ++ ++MYVCGPTVY++ HIGN R + FD + R Y Sbjct: 2 IKIYNTLTREKEVFQPLEEKKVKMYVCGPTVYNYIHIGNGRSTVSFDTVRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ + + + F +DT L T PR Sbjct: 60 TVDYLMNFTDVDDKIIRAAKE------LGTTAPEVAERFINAFNEDTAALNVKPATMNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +HI +I I ++ G+AY N ++ + T +YG S + IDE ++G E Sbjct: 114 VMDHIEDIIAFIAALVEKGYAYPVNGDVYYRTRKFAHYGQLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E WESPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKGDEIAWESPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + AN W+HNG++ + + KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KTFANYWMHNGYVTIGEDEEKMSKSLGNFVTVHEMV------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--------------- 344 + V+R + T YR PI ++ L EA+ L K T + Sbjct: 286 KKVDPQVLRFFLATTQYRRPIKYSETTLHEAQTNLQKLRTTYENAKFRLNSSHYQASDEE 345 Query: 345 ------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNA 387 + + + +D N + I +++LA+ + L F+ Sbjct: 346 VNAPVLEEFEERFIKEMDDDFNAANGITVVYELAKWLNLASEDPETDLALLTAGLAKFSE 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L+ ER+ K K F+ +D IR +L+ +G ILED Sbjct: 406 WLTIFGIYFVSEEL---LDEEIEQLINERIAARKAKDFARSDQIRDELKEQGIILEDT-- 460 Query: 448 PDNGQRMTRWKQK 460 + TRW+++ Sbjct: 461 ----PQGTRWRRE 469 >gi|322517683|ref|ZP_08070546.1| cysteine--tRNA ligase [Streptococcus vestibularis ATCC 49124] gi|322123671|gb|EFX95263.1| cysteine--tRNA ligase [Streptococcus vestibularis ATCC 49124] Length = 447 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MY+CGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLTENVVNMYICGPTVYNYIHIGNARSAVAFDTIRRYFEYCGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + ++ K F++DT +L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAANE------AGISTKELSDKFITAFMEDTAQLGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 N++ ++I + +I G AY A ++ F + NY + + +++ ++G E Sbjct: 114 VINYMDEIIAFVSTLIDKGFAYVAEGDVYFQVAKSKNYAKLANKTLEDLEIGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDRKENPLDFALWKAAKEGEISWESPWGPGRPGWHIECSVMATEILGNTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AE+ L T A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTHSLPLTDQVNQDELQTYLDAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + + L +A+ + + F + GI +E L+++ Sbjct: 346 QVAMDDDFNTANGVTVLFDMAKWINSGNYDETVKDAFEKMLQVFGIVFEEEVLDED---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IEKL++ER K F++AD IR +L ++G L D + G R TR Sbjct: 402 IEKLIEERQAARANKDFATADRIRDELAAQGIKLLDTR---EGVRWTR 446 >gi|303256926|ref|ZP_07342940.1| cysteine--tRNA ligase [Burkholderiales bacterium 1_1_47] gi|302860417|gb|EFL83494.1| cysteine--tRNA ligase [Burkholderiales bacterium 1_1_47] Length = 464 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 189/475 (39%), Positives = 262/475 (55%), Gaps = 34/475 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R + F++I P + MYVCG TVYD HIG+ R I FDV R L+ + Sbjct: 3 LKIYNTLSRSVEPFKSITPEKVGMYVCGVTVYDDCHIGHGRTFIAFDVARRWLQESGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TD+DDKII+RA + S + T++ +D L CL P+ +PR Sbjct: 62 -VKFVRNVTDVDDKIIKRAAERKIL------PSELAETYTKRMQEDLGELGCLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IP+M+ LI+ + G+AY+ N ++ F YG+ S +K+DE + G RV + Sbjct: 115 ATQYIPKMLALIEKLEEKGYAYQDKNGDVDFSVRKFKPYGALSGKKVDELQPGERVRVEE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWKR+ P EP W+S WG+GRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 175 AKQDPLDFALWKRAKPGEPEWDSKWGKGRPGWHIECSAMSCDLLGETFDIHGGGPDLMFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-ETKKFGGRSW 302 HHENEIAQS A+ +K N W+H+G L + G KMSKS GNF TI + L ET G Sbjct: 235 HHENEIAQSEAANG-KKFVNTWMHSGPLRVNGEKMSKSLGNFWTIRDALKETNTQYGDKN 293 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVL 352 +R +L +HYR PIDF+ + +A L + + D Sbjct: 294 GNETLRFFLLRSHYRSPIDFSSALVEDAHQALIRLYTALKNTPADDNPLDWNEKYAAQFK 353 Query: 353 SALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIE------VCKEHLNKN 404 A+ +D NT A+ L +LA+E K+ +L +LGI K ++ Sbjct: 354 EAMDDDFNTAQAVAVLFELAKEVNQTKSPELARQLKKLGGVLGILQLAPEAFVKGAVDSV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 A+E L+ ER K ++ AD IRK+L K +LED +T W++ Sbjct: 414 DEAAVEALIAERKAAKAAKNWARADEIRKELLEKNIVLEDAPGG-----VTTWRR 463 >gi|315649724|ref|ZP_07902808.1| cysteinyl-tRNA synthetase [Paenibacillus vortex V453] gi|315274912|gb|EFU38288.1| cysteinyl-tRNA synthetase [Paenibacillus vortex V453] Length = 468 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 247/490 (50%), Gaps = 58/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F A + +++YVCGPTVYD+ HIGNARPMI FDV+ Sbjct: 3 LQIYNTLTRMKETFVAQESGKVKIYVCGPTVYDYIHIGNARPMIFFDVVRAYFENQG--N 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V+YV N TD+DDK+I +A Q + + K Q + +D L T PR Sbjct: 61 DVSYVVNFTDVDDKMIRKAEQ------TGTTVPEVADKFIQAYYEDLDGLGIPRATLNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+++ +I IQ ++ AYE ++ + T +YG S++ +DE + G R+ Sbjct: 115 VTDNMENIIEFIQELVDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVDKR 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K+NP DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL FPH Sbjct: 175 KENPEDFVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE E+AQS + AN W+HNG++ + KMSKS GN + + EL E + Sbjct: 235 HECEVAQSEALTG-KPLANYWMHNGYIRINNEKMSKSLGNGVLVKELRE-------QYTK 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIIDP------- 349 +R ML THYR P++++ + + +A+ + + + T+ G D Sbjct: 287 EAVRYFMLSTHYRNPLNYSDEVMDQAQNSVERLANAAANIEHRLSTAIGSKDDEVSQEVA 346 Query: 350 --------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNASAH 390 + +D NT AI A+ + A E+ H++L FN Sbjct: 347 GKISAVLGEFHQKMQDDFNTPDAITAMFQWASEANQLLKEASIPAADLHEVLRAFNEMNG 406 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +L I + IE L+ ER+ K K ++ AD IR +L +G +LED Sbjct: 407 VLRI--VNTGTGDLLDEEIEALIAERIEARKNKNWARADEIRDKLADEGIVLEDT----- 459 Query: 451 GQRMTRWKQK 460 + RW++K Sbjct: 460 -AQGMRWRRK 468 >gi|255974563|ref|ZP_05425149.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T2] gi|257087877|ref|ZP_05582238.1| cysteinyl-tRNA synthetase [Enterococcus faecalis D6] gi|255967435|gb|EET98057.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T2] gi|256995907|gb|EEU83209.1| cysteinyl-tRNA synthetase [Enterococcus faecalis D6] Length = 470 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|256960771|ref|ZP_05564942.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Merz96] gi|256951267|gb|EEU67899.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Merz96] Length = 470 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILTFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|119505713|ref|ZP_01627782.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2080] gi|119458423|gb|EAW39529.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2080] Length = 458 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 192/477 (40%), Positives = 273/477 (57%), Gaps = 43/477 (9%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ NTL + F+ DP+ I +YVCGPTVY+ AHIGNARP++ FD+LYR+LR Y Sbjct: 3 ELRFTNTLTGQKEVFEPRDPNRITLYVCGPTVYNLAHIGNARPVVTFDMLYRVLRALY-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V Y RNITDIDDKII AR+ N+ I +T + T ++ +D +L L+P +P Sbjct: 61 PTVVYARNITDIDDKIIAAARER------NEGIDAVTKEFTDKYREDMAQLNALSPDLEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT +I M LI +I GHAY A ++FD +S+P+YG+ S R +++ G RV Sbjct: 115 RATENIKPMCDLITQLIARGHAYAAEGHVLFDVTSMPSYGALSGRNLEDMLAGARVEVAD 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S EPGW+SPWG GRPGWH+ECSAM +LG DIHGGG DLIFP Sbjct: 175 YKRSPGDFVLWKPSAEDEPGWDSPWGWGRPGWHLECSAMIRAHLGDAIDIHGGGRDLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQSCC + W+HN +++++G KMSKS GN T+ +LL +P Sbjct: 235 HHENERAQSCCGYGGD-FVRYWLHNAYVDMDGEKMSKSLGNVRTVRDLLGL-------YP 286 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--------VLSAL 355 V+R A+L THYR P++F+ + L A++ L+ + Q + I P +AL Sbjct: 287 GEVLRFALLSTHYRSPLNFSGEVLDNAKLTLNSFYQALRNTSDICPEDVRPEDTLAFTAL 346 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPI-----FNASAHILGI---EVCKEHLNKNISI 407 +DLNT AI ALH + K A ++G+ + + + S Sbjct: 347 LDDLNTPKAIAALHASCKALNKADAKTAATCKGELLAMGRLMGLLGSDPEQWFTESSSSA 406 Query: 408 A-----IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 A IE+ + RL K F++AD +R +L++ G LED + T W++ Sbjct: 407 ALTPEDIEQRLAARLEARARKDFAAADAVRDELQAAGIELEDS------PKGTTWRR 457 >gi|257871414|ref|ZP_05651067.1| cysteinyl-tRNA synthetase [Enterococcus gallinarum EG2] gi|257805578|gb|EEV34400.1| cysteinyl-tRNA synthetase [Enterococcus gallinarum EG2] Length = 469 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 177/491 (36%), Positives = 254/491 (51%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL RK FQ ++ ++MYVCGPTVY++ H+GN R ++ FD + R L Y E Sbjct: 2 IKIYNTLTRKKEVFQPLEQGRVKMYVCGPTVYNYIHVGNGRSVVSFDTIRRYLEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A++ + + I + + F KDT L T PR Sbjct: 61 -VDYVMNFTDVDDKIIRTAKE------LKTSAPEIADRFIEAFNKDTAALNVQPATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +HI +I IQ ++ G+AY ANN++ + T +YG S + IDE ++G E Sbjct: 114 VMDHIEDIIAFIQVLVDKGYAYMANNDVYYRTRKFKHYGQLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKENEIAWDSPWGLGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + AN W+HNG++ + E KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KTFANYWMHNGYVTIGEEEEKMSKSLGNFVTVHEMV------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--------------- 344 + V+R + T YR PI ++ L EAE L K + Sbjct: 286 QKIDPQVLRFFLATTQYRRPIKYSETTLKEAETNLQKLRTALENAQFRLQNSKEGFPEGT 345 Query: 345 -----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNAS 388 + + + +D N + I +++LA+ + I F Sbjct: 346 DHAILAEFEQRFVQEMDDDFNAANGITVVYELAKWLNTYSESASIDIELLTAAVEKFKEW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI E L + IE+L++ER+ + + F+ +D IR L+ KG ILED Sbjct: 406 LAIFGIYFVGEEL---LDEEIEQLIEERIQARQARDFARSDEIRDVLKEKGIILEDT--- 459 Query: 449 DNGQRMTRWKQ 459 + TRW++ Sbjct: 460 ---AQGTRWRR 467 >gi|330998823|ref|ZP_08322550.1| cysteine--tRNA ligase [Parasutterella excrementihominis YIT 11859] gi|329576037|gb|EGG57556.1| cysteine--tRNA ligase [Parasutterella excrementihominis YIT 11859] Length = 464 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 260/475 (54%), Gaps = 34/475 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R + F++I P + MYVCG TVYD HIG+ R I FDV R L+ + Sbjct: 3 LKIYNTLSRSVEPFKSITPEKVGMYVCGVTVYDDCHIGHGRTFIAFDVARRWLQESGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +VRN+TD+DDKII+RA + S + T++ +D L CL P+ +PR Sbjct: 62 -VKFVRNVTDVDDKIIKRAAERKIL------PSELAETYTKRMQEDLGELGCLPPSVEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IP+M+ LI+ + G+AY+ N ++ F YG+ S +K+DE + G RV + Sbjct: 115 ATQYIPKMLALIEKLEEKGYAYQDKNGDVDFSVRKFKPYGALSGKKVDELQPGERVRVEE 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWKR+ P EP W+S WG+GRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 175 AKQDPLDFALWKRAKPGEPEWDSKWGKGRPGWHIECSAMSCDLLGETFDIHGGGPDLMFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL-ETKKFGGRSW 302 HHENEIAQS A+ +K N W+H+G L + G KMSKS GNF TI + L ET G Sbjct: 235 HHENEIAQSEAANG-KKFVNTWMHSGPLRVNGEKMSKSLGNFWTIRDALKETNTQYGDKN 293 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVL 352 +R +L +HYR PIDF+ + +A L + + D Sbjct: 294 GNETLRFFLLRSHYRSPIDFSSALVEDAHQALIRLYTALKNTPADDNPLDWNEKYAAQFK 353 Query: 353 SALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHL------NKN 404 A+ +D NT A+ L +LA+E K+ +L +LGI + Sbjct: 354 EAMDDDFNTAQAVAVLFELAKEVNQTKSPELARQLKKLGGVLGILQLDPEAFVKGAVDSV 413 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 A+E L+ ER K ++ AD IRK+L K +LED +T W++ Sbjct: 414 DEAAVEALIAERKAAKAAKNWARADEIRKELLEKNIVLEDAPGG-----VTTWRR 463 >gi|257081388|ref|ZP_05575749.1| cysteinyl-tRNA synthetase [Enterococcus faecalis E1Sol] gi|256989418|gb|EEU76720.1| cysteinyl-tRNA synthetase [Enterococcus faecalis E1Sol] Length = 470 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---LDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|118595239|ref|ZP_01552586.1| cysteinyl-tRNA synthetase [Methylophilales bacterium HTCC2181] gi|118441017|gb|EAV47644.1| cysteinyl-tRNA synthetase [Methylophilales bacterium HTCC2181] Length = 456 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 190/477 (39%), Positives = 265/477 (55%), Gaps = 43/477 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++N+L +K F++I P ++MYVCG TVYDF H+G+AR +IVFD++YR + E Sbjct: 2 IKLFNSLSKKKEIFKSIVPGQVKMYVCGMTVYDFCHLGHARVLIVFDLIYRWFKASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA ++ ++T + + D L ++P +P+ Sbjct: 61 -VTYVRNITDIDDKIITRAAEQ------GVTYGVLTKQFIDEMNADAEALGVISPDAEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT I MI +IQ +I G+AY +NN++ + S YG S + +++ + G RV Sbjct: 114 ATESIDAMIIMIQGLIEKGYAYVGSNNDVFYAVSKFNGYGKLSGKSLEDLRAGNRVEVDK 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKN DF+LWK + P EP W SPWG+GRPGWHIECSAMS+ +LGK FDIHGGG DL FP Sbjct: 174 FKKNSFDFVLWKSAKPGEPCWNSPWGKGRPGWHIECSAMSNKFLGKNFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + AN W+HNGF+ ++ KMSKS GNF TI E+L + Sbjct: 234 HHENEIAQSEAFNGC-QMANYWLHNGFVKVDNEKMSKSLGNFFTIREILN-------HYE 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-QTSTSKGIIDPA----------VL 352 ++R +L YR P++++ L +A+ L++ + ID Sbjct: 286 PEIVRFFVLKAQYRSPLNYSDTHLEDAKQGLTRLYLAIRGNDTRIDQEIDWKNNFASQFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGIEVCKEHL-------NK 403 AL +D NT AI L LA E K++ + A+ILGI L + Sbjct: 346 DALDDDFNTSEAISILFSLANEVNKSNQDQEKQLLIQLANILGILEMDPELFLRGNIKSS 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I I+ L+ +RL K K + AD IR LE +LED N T W++K Sbjct: 406 DNDIDIDLLISDRLSAKKNKDYQKADEIRIFLEGHDILLEDTPN------GTIWRKK 456 >gi|16802285|ref|NP_463770.1| cysteinyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|224498915|ref|ZP_03667264.1| cysteinyl-tRNA synthetase [Listeria monocytogenes Finland 1988] gi|224502466|ref|ZP_03670773.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL R2-561] gi|254828699|ref|ZP_05233386.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] gi|255028571|ref|ZP_05300522.1| cysteinyl-tRNA synthetase [Listeria monocytogenes LO28] gi|21264004|sp|Q8YAB1|SYC_LISMO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|16409604|emb|CAD00766.1| cysteinyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|258601104|gb|EEW14429.1| cysteinyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] Length = 471 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 251/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L + Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|25010277|ref|NP_734672.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae NEM316] gi|77407940|ref|ZP_00784691.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae COH1] gi|30316158|sp|Q8E7F2|SYC_STRA3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|23094629|emb|CAD45847.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae NEM316] gi|77173487|gb|EAO76605.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae COH1] gi|319744134|gb|EFV96507.1| cysteine--tRNA ligase [Streptococcus agalactiae ATCC 13813] Length = 447 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 164/468 (35%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D L T PR Sbjct: 61 -VNYISNFTDVDDKIIKGAAE------AGMDTKSFSDKFISAFMEDVAALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G E Sbjct: 114 VIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRVDGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT++++L +S Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML-------KS 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 VIR + YR+P++FT + + +AE+ L T A Sbjct: 286 VDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNLKYLKNTFNLPIQENANDEELEQFVKAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + ++A+ H + I GI +E L+ + Sbjct: 346 QEAMDDDFNTANGITVIFEMAKWINSGHYTSKVKETLAELLEIFGIVFQEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R + F++AD IR +L +G L D K+ G R TR Sbjct: 402 IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTKD---GVRWTR 446 >gi|257126844|ref|YP_003164958.1| cysteinyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] gi|257050783|gb|ACV39967.1| cysteinyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] Length = 483 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 180/494 (36%), Positives = 267/494 (54%), Gaps = 64/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ KI EF+ I+ + ++MYVCGPTVY++ H+GNARP++VFD L R + E Sbjct: 1 MKLYNTMTNKIEEFKTIEENKVKMYVCGPTVYNYIHLGNARPIVVFDTLARYFEHKGME- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII ++ +E + S ++ K + F +D ++L L +P+ Sbjct: 60 -VEFVQNFTDVDDKIINKSMEE------GTSASEVSEKYIKYFFEDISKLNILESVKRPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I +IQ +I +G AYE + ++ F+ +YG S +KI+E ++G R+ Sbjct: 113 VTENMSEVIEIIQKLIDNGFAYEKDGDVYFEVKKYKDYGKLSNQKIEELELGARIDVSEI 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK+ EP WESPWG+GRPGWHIECSAM+ YLG FDIHGGG DL+FPH Sbjct: 173 KKNPVDFALWKKKKDGEPFWESPWGQGRPGWHIECSAMAKKYLGDTFDIHGGGQDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN W+HNGF+ + G KMSKS GNF + E+LE + Sbjct: 233 HENEIAQSKCAYHGN-FANYWLHNGFIQINGDKMSKSLGNFFLLREILE-------KFSG 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILL-------------------SKWPQTSTSK- 344 VIRL +L THYR+PI+F+ + + + + L K S+ Sbjct: 285 NVIRLFILSTHYRKPINFSFENMEDTKKALQNIIKSMNKFENIVEKYKNEKIENVKNSEF 344 Query: 345 ----GIIDPAVLSALYNDLNTVSAIQALHKLARESTK------------NHDLLPIFNAS 388 D A+ D+NT A+ + RE+ K +++ +++ Sbjct: 345 SQKIDEFDKKFEEAMAEDMNTPQALATIFDQIRETNKFISTNESEFSTIYYEIKKSYDSL 404 Query: 389 AH----ILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLE 436 + GI + E+ K IE L++ R K F +D IR +L+ Sbjct: 405 KAKIENVFGIAIEVENAVKEEDGENMELTKKLIELLIKLRSEARSEKNFKLSDEIRDELK 464 Query: 437 SKGFILEDYKNPDN 450 G ++D K+ Sbjct: 465 VLGVEIKDNKDGST 478 >gi|331266879|ref|YP_004326509.1| cysteinyl-tRNA synthetase [Streptococcus oralis Uo5] gi|326683551|emb|CBZ01169.1| cysteinyl-tRNA synthetase [Streptococcus oralis Uo5] Length = 447 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKTAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN WIHNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWIHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +AE L T + Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKITYEQPFTGNVDTQELQDFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N+ + I + ++A+ + + A + GI +E L+ + Sbjct: 346 VAAMDEDFNSANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|184154737|ref|YP_001843077.1| cysteinyl-tRNA synthetase [Lactobacillus fermentum IFO 3956] gi|227514004|ref|ZP_03944053.1| cysteine--tRNA ligase [Lactobacillus fermentum ATCC 14931] gi|260663234|ref|ZP_05864126.1| cysteinyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] gi|229558713|sp|B2GAB5|SYC_LACF3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|183226081|dbj|BAG26597.1| cysteinyl-tRNA synthase [Lactobacillus fermentum IFO 3956] gi|227087648|gb|EEI22960.1| cysteine--tRNA ligase [Lactobacillus fermentum ATCC 14931] gi|260552426|gb|EEX25477.1| cysteinyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] Length = 472 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 163/492 (33%), Positives = 253/492 (51%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + MYVCGPTVY++ HIGNAR ++ FD + R L + + Sbjct: 2 LKIYNTLTRQKEEFHPQQAGIVNMYVCGPTVYNYIHIGNARSVVAFDTVRRYLEFSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A+++ + + K Q +++DT L T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAKEQ------GITVPELAYKYIQAYMEDTAALNVEPATTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I +I I+++I G+AY++ ++ + +YG S + +D+ ++G Sbjct: 114 ATENIDGIISFIEDLIEKGYAYQSGGDVYYRARKFAHYGQLSGQSLDDLEVGASEHVSTE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E KK+P DF LWK + P E W+SPWG GRPGWHIECS MS+ YLG DIH GG DL Sbjct: 174 EVAKKKDPLDFALWKAAKPGEIKWDSPWGAGRPGWHIECSVMSTKYLGDTLDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + N W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 EFPHHENEIAQSEAKTG-HRFVNYWMHNGFVTIGRDNEKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------- 343 + V+R M T YR PI ++ + L EA+ L T + Sbjct: 287 -KEVDPQVLRFFMSTTQYRRPIQYSQESLVEAQANLEHLKNTYDNLAYRLKDATSGTDGG 345 Query: 344 ----KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNAS 388 ++A+ +D+N + I +++L R + + + + Sbjct: 346 VQRQLADFRARFVAAMDDDINVQNGIAVVYELMRFANQYVEQRLVQREPIVAIQLMLKRL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + G+++ + I++L+++R K F+ +D IR QL +G ILED Sbjct: 406 VAVFGVDLAV-SATEINDEKIKELIEKRNAARAEKDFALSDQIRDQLRDQGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TR++++ Sbjct: 462 ---PQGTRYRKE 470 >gi|154684612|ref|YP_001419773.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42] gi|187629789|sp|A7Z0L6|SYC_BACA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154350463|gb|ABS72542.1| CysS [Bacillus amyloliquefaciens FZB42] Length = 466 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 164/489 (33%), Positives = 252/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRKKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + ++ + + + +D L C Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTVSERFIKAYFEDVGALGCRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++ +I + +I G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVMENMDAIIEFVSELIKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKDGEISWDSPWGKGRPGWHIECSAMVKKYLGDEIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP--- 349 ++R ML HYR PI+++ + L + + ++ ST+ D Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLEKTKNAFNRLKTAYSNLNHRLISSTNLTDNDEEWL 344 Query: 350 --------AVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAH---- 390 A A+ +D NT +AI LA+ E ++ F + Sbjct: 345 AKIEEHRTAFEEAMDDDFNTANAISVWFDLAKVANYYMQEDNTADHVIKAFISMFDRIGS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + +E L L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGLTLGEEELVDEEIEE---LIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|306829040|ref|ZP_07462231.1| cysteine--tRNA ligase [Streptococcus mitis ATCC 6249] gi|304428845|gb|EFM31934.1| cysteine--tRNA ligase [Streptococcus mitis ATCC 6249] Length = 447 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ S ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDSKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E I K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEIADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMEDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDIQELQDFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + A + GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IETLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|270293221|ref|ZP_06199432.1| cysteine--tRNA ligase [Streptococcus sp. M143] gi|270279200|gb|EFA25046.1| cysteine--tRNA ligase [Streptococcus sp. M143] Length = 450 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 171/472 (36%), Positives = 246/472 (52%), Gaps = 39/472 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + K F +D T L T Sbjct: 61 GYE--VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PR + +I ++++I G+AYE+ ++ F NY + + +++ ++G Sbjct: 113 RHPRVVEFMADIIRFVEDLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGR 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKTAKTGEISWDSPWGAGRPGWHIECSVMSTGILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGII 347 V+R HYR+PI+FT + + +AE L T + Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDAQELQDF 344 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKN 404 ++A+ D N + I + ++A+ + + A + GI +E L+ Sbjct: 345 KDKFVAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLD-- 402 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 403 --AEIEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 449 >gi|227555727|ref|ZP_03985774.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HH22] gi|227175132|gb|EEI56104.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HH22] gi|315573949|gb|EFU86140.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0309B] gi|315581900|gb|EFU94091.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0309A] Length = 478 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|300811849|ref|ZP_07092315.1| cysteine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497168|gb|EFK32224.1| cysteine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 474 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 173/496 (34%), Positives = 256/496 (51%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E + + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARAE------GTTVPELAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ IP +I IQ +I G+AYE + ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYETDGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKVADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L+T Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDILKTV-- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 V+R M YR ID++ + L +A +L ++ T ++G+ D Sbjct: 290 -----DPQVLRFFMASVQYRSQIDYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFN 386 P +A+ +D N +A+ A+++ N + Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW ++ Sbjct: 465 T------PQGTRWSRE 474 >gi|256028172|ref|ZP_05442006.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11] gi|289766105|ref|ZP_06525483.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11] gi|289717660|gb|EFD81672.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11] Length = 472 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 182/492 (36%), Positives = 270/492 (54%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RAT++I +MI +IQ +I G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 RATDNIDEMIKIIQALIDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKRDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGNSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++ + G KMSKS G+F+ + ++L + + Sbjct: 234 PHHENEMAQSKCACGG-TFARYWMHNGYIKINGEKMSKS-GSFVLLRDIL-------KHF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L +HYR+P+DF+ + L + + L + T +D Sbjct: 285 EGRVIRLFVLGSHYRKPMDFSDEELNQTKSSLERIENTLKRIKELDRENIKGTDDCQELL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAH----------- 390 + A+ D NT A+ + +L + K D I Sbjct: 345 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEANISKKGLEVIDEVYSYLVM 404 Query: 391 ----ILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 405 IIQNVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 464 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 465 KDK------TTW 470 >gi|309799903|ref|ZP_07694108.1| cysteinyl-tRNA synthetase [Streptococcus infantis SK1302] gi|308116493|gb|EFO53964.1| cysteinyl-tRNA synthetase [Streptococcus infantis SK1302] Length = 457 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 173/465 (37%), Positives = 244/465 (52%), Gaps = 33/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 12 IKIYDTMSRDLREFVPITKGEVLMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 71 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRYPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 124 VVEFMDDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 184 TARKENPVDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ LET Sbjct: 244 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALET------- 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R HYR+PI+FT + + +AE L T G +DP Sbjct: 296 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDPGELQAFKDKF 355 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 ++A+ D NT + I + ++A+ + + A +L + + + IE Sbjct: 356 VAAMDEDFNTANGITVIFEMAKWINSGNYDAAVKETLAAML-EVFGVVFVEEVLDEEIEA 414 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+Q+R K F++AD IR QL ++G L D K+ G R TR Sbjct: 415 LIQKRQEARANKDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 456 >gi|327468352|gb|EGF13837.1| cysteine--tRNA ligase [Streptococcus sanguinis SK330] Length = 447 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 173/468 (36%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + D+ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTSDIKAAFAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQVARGNRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|257088530|ref|ZP_05582891.1| cysteinyl-tRNA synthetase [Enterococcus faecalis CH188] gi|256997342|gb|EEU83862.1| cysteinyl-tRNA synthetase [Enterococcus faecalis CH188] Length = 470 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 249/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIGVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|325288490|ref|YP_004264671.1| cysteinyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] gi|324963891|gb|ADY54670.1| cysteinyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] Length = 476 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 178/497 (35%), Positives = 251/497 (50%), Gaps = 60/497 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNT+ ++ EF + + MY CGPT Y++ H+GNAR ++VFD++ R L Y Sbjct: 1 MTVKIYNTIHKEKEEFIPREAGKVAMYACGPTTYNYFHLGNARMLVVFDMVRRYLAYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYV+N TD+DDKII+RA +E N + + +++ KD L T Sbjct: 61 E--VTYVQNFTDVDDKIIKRASEE------NCEPLALAGRYIEEYYKDANALNIQPATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT+HI +MI +I+ + G AY ++ F P YG S R +++ + G RV Sbjct: 113 PKATDHIKEMIEIIKGLEKKGLAYPVEGDVYFAVEHFPQYGRLSGRNLEDLQAGARVEID 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K NP DF LWK++ P EP W SPWG GRPGWHIECSAM+ YLG FDIHGGG DL+F Sbjct: 173 DKKLNPMDFALWKKAKPGEPAWPSPWGDGRPGWHIECSAMALKYLGPNFDIHGGGGDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS E+ A W+HN F+ + KMSKS GNF I ++L + + Sbjct: 233 PHHENEIAQSEGYLDGEQFARYWMHNAFITVNQEKMSKSLGNFFMIRDIL-------KKF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 P V+R +L THYR P+DF ++L A L + + G Sbjct: 286 PGEVVRFYLLGTHYRSPLDFDDEKLEMAARGLDRLKTSVRLAGEALSKGKSTDSAGTRGE 345 Query: 347 -------IDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 A A+ +D N+ A +L LA+E + Sbjct: 346 LLNASSKARAAFEEAMEDDFNSAQAYASLFDLAKEINTALNEGGWTGAQIAEARDTLIDL 405 Query: 389 AHILGIEVCKEH-----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A ILG ++ K+ + + +E +++ R K +S+AD IR +L+ ILE Sbjct: 406 AGILGFDLQKDSEVPAGESGKFNAVMELVLELRAKARADKDWSTADLIRDRLKEASIILE 465 Query: 444 DYKNPDNGQRMTRWKQK 460 D +RW K Sbjct: 466 DT------AEGSRWYLK 476 >gi|145589043|ref|YP_001155640.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|187629841|sp|A4SX62|SYC_POLSQ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|145047449|gb|ABP34076.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 473 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 188/491 (38%), Positives = 256/491 (52%), Gaps = 56/491 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ I P ++MYVCG TVYDF HIG+AR MIVFD++ R LR E Sbjct: 2 LQIYNTLSRSKQVFKPIVPGKVKMYVCGMTVYDFCHIGHARVMIVFDMVVRWLRASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + IS +T++ D+ L + P +PR Sbjct: 61 -VQYVRNITDIDDKIIKRALENS------EPISALTNRFIAAMHADSDELGLMHPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I QM +I +I + AY+ + ++ F +P YG S + +DE G RV Sbjct: 114 ATDYIQQMQGMIGKLIENELAYQGEDGDVNFAVRLLPRYGQLSGKTLDELNAGERVAIGG 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W SPWG GRPGWHIECSAMS LG FDIHGGG DL Sbjct: 174 GKRDPLDFVLWKSAKPEEPADTRWNSPWGEGRPGWHIECSAMSCDLLGAHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIE-------KTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 FPHHENEIAQS A + N W+HNG + + KMSKS GNF I ++L Sbjct: 234 QFPHHENEIAQSEGALYGQNRQENDAPFVNYWMHNGHIRVNEEKMSKSLGNFFLIRDVL- 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----- 348 +S+ V+R ML HYR PI+++ +L EA L++ T +D Sbjct: 293 ------KSFDPEVVRFFMLKAHYRSPINYSDAQLEEARSGLTRLYTALTHIPEVDTVPID 346 Query: 349 ------PAVLSALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILG---- 393 A+ +D NT AI L LA E + L + + L Sbjct: 347 LQNPWAKRFADAMNDDFNTPEAIAVLFDLASEVNRAQGAEKQMLAGLLKSLGGTLNFLQR 406 Query: 394 -----IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 ++ + + S IE+ + R+ + K F+ AD IRK L +G +LED Sbjct: 407 DPTNFLQAGSKDQSGLSSEQIEEHIAARVAAKQAKDFAKADGIRKALLEQGVVLEDKPGG 466 Query: 449 DNGQRMTRWKQ 459 +T W++ Sbjct: 467 -----ITEWRR 472 >gi|256846544|ref|ZP_05552001.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] gi|256718313|gb|EEU31869.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] Length = 473 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 179/492 (36%), Positives = 272/492 (55%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT+++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NISIKEIAERYIKAYFEDTSKINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKKDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSKKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENERAQSKCGCGG-TFARYWMHNGYININGEKMSKSSGSFVLLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 VIRL +L +HYR+P++F+ L + + L + T Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDAELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 +K I+ + A+ D NT A+ + +L + K D + I Sbjct: 346 ATKKEIEAKFIEAMDEDFNTAQALGYIFELVKAVNKTLDEVNISKKGLEVIDEVYSYLVM 405 Query: 390 ---HILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|300704462|ref|YP_003746065.1| cysteine tRNA synthetase [Ralstonia solanacearum CFBP2957] gi|299072126|emb|CBJ43458.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Ralstonia solanacearum CFBP2957] Length = 465 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 175/484 (36%), Positives = 252/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+ +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIESGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII+RA + + I +T + +D L P H+ Sbjct: 62 G--VTYVRNITDIDDKIIKRA------VENGETIGALTDRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQANGLAYQAADGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWTSPWGEGRPGWHIECSAMSCELLGTHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQ+ A+ N W+HNGF+ + KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQAEGANG-NTFVNTWMHNGFVRVNDEKMSKSLGNFFTIREVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + + V+R +L +HYR ++++ L +A L++ A Sbjct: 287 -KVYDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCKEH----- 400 A+ +D NT A+ L +LA E K L A ++G+ H Sbjct: 346 GQRFREAMNDDFNTPVAMAVLFELASEVNKTRSAALASQLAALGGVMGLLGRDPHAFLQG 405 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + +E ++ R + + F+ AD IR L + G +LED +T Sbjct: 406 GVGAAADGLDTAEVEARIEARRVAKAARDFARADGIRADLLAAGIVLEDKPGG-----VT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|171463666|ref|YP_001797779.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229470557|sp|B1XUY8|SYC_POLNS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171193204|gb|ACB44165.1| cysteinyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 473 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 190/491 (38%), Positives = 255/491 (51%), Gaps = 56/491 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL R F+ I P ++MYVCG TVYDF HIG+AR MIVFD++ R LR E Sbjct: 2 LQIYNTLSRSKQVFKPIVPGKVKMYVCGMTVYDFCHIGHARVMIVFDMVVRWLRASGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA I + IS +T++ D+ L + P +PR Sbjct: 61 -VLYVRNITDIDDKIINRA------IENGEPISALTNRFVDAMHADSDELGLMHPDQEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT++I QM +I +I + AY+A + ++ F +P YG S + +DE G RV Sbjct: 114 ATDYIAQMQGMIGKLIENELAYQANDGDVNFAVRLLPRYGQLSGKTLDELNAGERVAVGD 173 Query: 184 HKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 174 GKRDPLDFVLWKSAKPEEPADTRWKSPWGEGRPGWHIECSAMSCDLLGEHFDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIE-------KTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 FPHHENEIAQS A + N W+HNG + + KMSKS GNF I ++L Sbjct: 234 QFPHHENEIAQSEGALYGKDRKVDDAPFVNYWMHNGHIRVNEEKMSKSLGNFFLIRDVL- 292 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----------- 342 +S+ VIR ML THYR PI+++ +L EA L + Sbjct: 293 ------KSFDPEVIRFFMLKTHYRSPINYSDAQLEEARSGLVRLYTALAQGSKAQTISLG 346 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN--------HDLLPIFNASAHILG- 393 S A+ +D NT AI L + E + ++L AS + L Sbjct: 347 SSNPWAKRFADAMNDDFNTPEAIAVLFDIVSEVNRAQGEEKQVLANILKALGASLNFLQR 406 Query: 394 -----IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 ++ + IE+ + R+ + K F+ AD IRK L +G +LED Sbjct: 407 DPTVFLQSSAKDQAGLSPEQIEEQIAARVAAKQAKDFAKADAIRKALLEQGIVLEDKPGG 466 Query: 449 DNGQRMTRWKQ 459 G W++ Sbjct: 467 LTG-----WRR 472 >gi|284800534|ref|YP_003412399.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284993720|ref|YP_003415488.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5923] gi|284056096|gb|ADB67037.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284059187|gb|ADB70126.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 08-5923] Length = 471 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 251/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L + Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQSDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|319891494|ref|YP_004148369.1| Cysteinyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] gi|317161190|gb|ADV04733.1| Cysteinyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] gi|323465335|gb|ADX77488.1| cysteinyl-tRNA synthetase [Staphylococcus pseudintermedius ED99] Length = 466 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 171/481 (35%), Positives = 259/481 (53%), Gaps = 47/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I +YNTL R+ FQ I+P ++MYVCGPTVY++ HIGNARP I +DV+ R Y E Sbjct: 2 ITLYNTLTRQKEVFQPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+R+++ + + + I + Q F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKLIKRSQE------LGETVPEIAERYIQAFYEDTEALNVKKATSNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 +H+ +I I+ ++ G+AYE+ ++ F T +YG S + ID+ K+G R+ + + Sbjct: 114 VMDHMDDIIKFIKKLVDEGYAYESGGDVYFRTRQFEDYGKLSHQSIDDLKVGARIEQGEN 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK++ P E WESP+G GRPGWHIECS M+ LG DIH GG DL FPH Sbjct: 174 KEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFEKLGPTIDIHAGGSDLQFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + E AN W+HNGF+N++ KMSKS GNFI +++++ + Sbjct: 234 HENEIAQSEAHNH-ETFANYWMHNGFINIDNEKMSKSLGNFILVHDII-------KEVDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------------- 344 V+R M+ HYR PI++ ++ + A L + + + Sbjct: 286 DVLRFFMISVHYRSPINYNLELVEAARSGLERIRNSYQALTERETVATDLTNDATMLTQI 345 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILG 393 I + + +D NT +AI A + L + + K +F + +LG Sbjct: 346 DAILTQFETVMDDDFNTANAITAWYDLVKLANKYLLEDNTSTQVIQRFKEVFAIFSDVLG 405 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + H+ + IE+L++ER + K ++ AD IR QL+++ ILED +R Sbjct: 406 VPLTSNHVEGLLDEEIERLIEERNAARQAKDYARADEIRDQLKAQNIILEDTPQGVRYKR 465 Query: 454 M 454 Sbjct: 466 G 466 >gi|262281989|ref|ZP_06059758.1| cysteinyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] gi|262262443|gb|EEY81140.1| cysteinyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 168/469 (35%), Positives = 244/469 (52%), Gaps = 36/469 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + K F +D T L T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVTALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PR + +I +++++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 RHPRVVEFMADIIRFVEDLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGR 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L Sbjct: 233 ADLEFPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDAL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID------- 348 ++ V+R HYR+PI+FT + + +A L T G D Sbjct: 287 --KTIDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSDQLQAF 344 Query: 349 -PAVLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKN 404 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 345 LDKFTAAMDEDFNAANGITVVFELAKWINSGNYTAEVKEAFAKLLEVFGIVFVEEVLDAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + + F++AD IR L ++G L D K+ R Sbjct: 405 ----IERLIEERQVARANRDFATADRIRDDLAAQGIKLLDTKDGVRWTR 449 >gi|227873421|ref|ZP_03991676.1| cysteine--tRNA ligase [Oribacterium sinus F0268] gi|227840726|gb|EEJ51101.1| cysteine--tRNA ligase [Oribacterium sinus F0268] Length = 468 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 173/486 (35%), Positives = 245/486 (50%), Gaps = 54/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ ++ EF I+ IRMYVCGPTVY+ HIGNARPMIVFD R + Y + Sbjct: 1 MKIYNTMSKQKEEFVPIEEGKIRMYVCGPTVYNLIHIGNARPMIVFDTFRRFMEYKGYKV 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 C YV N TD+DDKII+ A E S IT + + KD + L + T P+ Sbjct: 61 C--YVSNYTDVDDKIIKTAMDE------GTDCSSITERYISEVEKDMSDLNIMEATAHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I M+ LI ++ G AY + + +DT++ P+YG S + +++ + G R V Sbjct: 113 ATEEIQGMVNLIDVLVKKGFAYPVDGTVYYDTTAFPSYGKLSHKNMEDLRSGLRELKVSG 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + KK+P DF+LWK EP W SPW GRPGWH EC M+ Y G DIH GG DL+ Sbjct: 173 EEEKKSPTDFVLWKPKKMGEPYWNSPWSEGRPGWHTECCVMAPKYCGGALDIHAGGEDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQ A E+ A W+HN F+N++ +KMSKS GNF T+ ++ Sbjct: 233 FPHHENEIAQYEAAHG-EQFARYWMHNAFINIDNKKMSKSLGNFFTVRDVTS-------Q 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-----------------------P 338 + V+R ML HYR P++F+ + A+ L + Sbjct: 285 FDPMVLRFYMLSAHYRSPLNFSKDLMEAAKTSLGRILTAIWRLQDLIPRLEEKAFSKEEE 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNAS 388 + + + + +DLNT AI + +L R + LL Sbjct: 345 ENVKTAEGYEAIFSEKMEDDLNTADAITQIFELVRLANATVEEHSSKAYGEALLQKLETL 404 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 +LGI E + + +E L+Q+R K K F+ AD IR +L + G L+D +N Sbjct: 405 MAVLGIRT--EKKEEELGAKVEALIQQRQDARKNKDFAKADQIRDELLAMGIQLKDTRNG 462 Query: 449 DNGQRM 454 Q++ Sbjct: 463 VEWQKI 468 >gi|313887550|ref|ZP_07821233.1| cysteine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846428|gb|EFR33806.1| cysteine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 465 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 179/489 (36%), Positives = 250/489 (51%), Gaps = 59/489 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK +F I + +Y CGPTVY+F H+GNARP++VFD L R Y + Sbjct: 1 MKLYNTLTRKKEDFVPIKEGEVGIYNCGPTVYNFIHVGNARPLVVFDTLRRYFDYKGMK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDK+I +A E + S I + ++F KD L T P Sbjct: 60 -VKFVVNFTDIDDKMINKANDEGVKV------SDIAERYIKEFKKDAGGLHLYDYETINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI ++I IQ +I G AY +N ++ FD S +YG S++ +++ G RV Sbjct: 113 RATEHIDEIIDFIQTLIDKGAAYVSNGDVYFDISHAKDYGKLSKKNLEDLISGHRVDVND 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF LWK EP W++PWG GRPGWHIECS M+ +G DIH GG DL FP Sbjct: 173 NKKNPQDFALWKNKKEGEPYWQAPWGEGRPGWHIECSVMAKTIIGDNIDIHTGGEDLQFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + + AN W+HNG + ++ KMSKS GNF T+ E+ E + Sbjct: 233 HHENEIAQSETCNGV-PFANYWLHNGMITVDNEKMSKSKGNFFTVREISE-------EFD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII---------------- 347 V+R +L T YR PI+F+ + + + + + Sbjct: 285 LEVLRFFLLTTQYRSPINFSREVMEQTKNSSKRLYNAKYKLEDAIEKTSVEKMTEEEENL 344 Query: 348 -------DPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAH 390 A+ +DLNT AI A+ L ++ N D L + Sbjct: 345 LKGYDKHIEKFEKAMEDDLNTADAITAIFDLVKDINLNLDENSSKEVLEKSLELLKKLTK 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI E + IS IE+L++ER K K F+ AD IR +L++ G +ED ++ Sbjct: 405 VLGI---MEEEREEISGDIEELIKERNEARKNKDFTRADEIRDELKNMGIEIEDTRS--- 458 Query: 451 GQRMTRWKQ 459 T WK+ Sbjct: 459 ---GTTWKR 464 >gi|332365578|gb|EGJ43338.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1059] Length = 447 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 173/468 (36%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKKE------GITPKEVADKYIAAFHEDVTALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVAKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKEAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRNELAAQGIKLLDTKD---GVRWTR 446 >gi|307296635|ref|ZP_07576455.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|306495971|gb|EFM65559.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|315029626|gb|EFT41558.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4000] Length = 478 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEELG---DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|308171985|ref|YP_003918690.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|307604849|emb|CBI41220.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|328551795|gb|AEB22287.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens TA208] gi|328910056|gb|AEB61652.1| cysteinyl-tRNA synthetase [Bacillus amyloliquefaciens LL3] Length = 466 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 161/489 (32%), Positives = 250/489 (51%), Gaps = 57/489 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL RK F ++ ++MYVCGPTVY++ HIGNARP IV+D + L Y Sbjct: 1 MTITLYNTLTRKKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV N TD+DDK+I+ A + + + + ++ + + + +D L C Sbjct: 61 D--VQYVSNFTDVDDKLIKAANE------LGEDVPTVSERFIKAYFEDVGALGCRKADLH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++ +I + +I G+AYE+ ++ F T + YG S++ IDE + G R+ Sbjct: 113 PRVMENMDAIIEFVSELIKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + E W+SPWG+GRPGWHIECSAM YLG DIH GG DL F Sbjct: 173 EKKEDALDFALWKAAKDGEISWDSPWGKGRPGWHIECSAMVKKYLGDEIDIHAGGQDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG++N++ KMSKS GNF+ +++++ + + Sbjct: 233 PHHENEIAQSEALTG-KTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-------KQY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK------------------ 344 ++R ML HYR PI+++ + L + + ++ ++ Sbjct: 285 DPQLLRFFMLSVHYRHPINYSEELLEKTKNAFNRLKTAYSNLNHRLISSTNLTDNDDEWL 344 Query: 345 ---GIIDPAVLSALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAH---- 390 A A+ +D NT +AI LA+ E ++ F + Sbjct: 345 AKIEEHRTAFEEAMDDDFNTANAISVWFDLAKLANYYMQEDNTADHVIKAFISMFDRIGS 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + +E L L+++R + + F+ +D IR QL+S ILED Sbjct: 405 VLGLTLGEEELVDEEIEE---LIEKRNEARRNRDFALSDQIRDQLKSMNIILEDT----- 456 Query: 451 GQRMTRWKQ 459 + TRWK+ Sbjct: 457 -AQGTRWKR 464 >gi|261599939|dbj|BAI45220.1| cysteinyl tRNA synthetase [Beta vulgaris] Length = 582 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 178/510 (34%), Positives = 269/510 (52%), Gaps = 74/510 (14%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +KK + +YNT+ RK F+ + MYVCG T YDF+HIG+AR + FD+LYR L+Y Sbjct: 80 IKKDLWVYNTMSRKKEIFKPKVDGKVGMYVCGVTAYDFSHIGHARAYVTFDILYRYLKYL 139 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + C YVRN TD+DDKII RA + + + ++ + +F +D + L CL P+ Sbjct: 140 GYDVC--YVRNFTDVDDKIIARANE------VGENPISLSRRFCDEFHQDMSYLHCLPPS 191 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR ++H+PQ+I +I+ I+ +G AY + ++ F P+YG S RK+++ + G RV Sbjct: 192 VEPRVSDHMPQIIDMIKQIVDNGFAYGVDGDVYFSVEKFPDYGRLSGRKLEDNRAGERVA 251 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NPADF LWK + EP WESPWG GRPGWHIECSAMSS YLG FDIHGGG+DL Sbjct: 252 IDSRKRNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSSVYLGYSFDIHGGGMDL 311 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEI QSC A W+HNGF+ + KMSKS GNF TI +++E Sbjct: 312 MFPHHENEIVQSCAACCESN-IRYWVHNGFVTINSEKMSKSLGNFFTIRQVIEL------ 364 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSK-- 344 + +RL ++ THYR PI+++ Q L +++ LLS++ + + Sbjct: 365 -YHPLALRLFLMGTHYRSPINYSDVLLESASERIFYIYQTLQDSQALLSEYGRANLKDSI 423 Query: 345 --------GIIDPAVLSALYNDLNTVSAIQALHKLAREST-------------KNHDLLP 383 + + + ++ +DL+T + AL + + L Sbjct: 424 PQDIVSCINDLQNSFVISMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKRELRVESLAA 483 Query: 384 IFNASAHIL------------GIEVCKEHLNKNI---SIAIEKLVQERLILLKMKKFSSA 428 + H+L + +E K + +++ ++ER + K K++ + Sbjct: 484 LEKTIKHVLTALGLMPSSYSEALHQLREKALKRVKFSETEVQQKIEERDMARKNKEYEKS 543 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 D IRK+L + G L D T W+ Sbjct: 544 DAIRKELAAVGIALMDS------PEGTTWR 567 >gi|327472399|gb|EGF17830.1| cysteine--tRNA ligase [Streptococcus sanguinis SK408] Length = 447 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 167/465 (35%), Positives = 243/465 (52%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKKE------GITPKEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I +++++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VVEFMDDIIRFVEDLVDKGYAYESEGDVYFRVEKSRDYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + +N W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFSNYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQTDSAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + F++AD IR +L ++G L D K+ R Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTKDGVRWTR 446 >gi|255971591|ref|ZP_05422177.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T1] gi|257421384|ref|ZP_05598374.1| cysteinyl-tRNA synthetase [Enterococcus faecalis X98] gi|255962609|gb|EET95085.1| cysteinyl-tRNA synthetase [Enterococcus faecalis T1] gi|257163208|gb|EEU93168.1| cysteinyl-tRNA synthetase [Enterococcus faecalis X98] gi|323479282|gb|ADX78721.1| cysteinyl-tRNA synthetase [Enterococcus faecalis 62] Length = 470 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVADRFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|188997490|ref|YP_001931741.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|229558793|sp|B2V6B4|SYC_SULSY RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|188932557|gb|ACD67187.1| cysteinyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 487 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 177/508 (34%), Positives = 250/508 (49%), Gaps = 73/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL K +F I P +++Y CG TVYD+ H+G+ R +IVFD++ R LRY Sbjct: 1 MSLKIYNTLTGKKEDFAPIKPGEVKIYTCGVTVYDYNHVGHGRSLIVFDMIRRYLRYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN TD+DDKII RA+ E S+I+ K +++ D + + Sbjct: 61 N--VIFVRNFTDVDDKIINRAKNECLP------FSVISDKFIKEYFDDAEKFRIEPADIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HIP +I IQ ++ G+AYEA+ ++ F YG S+R IDE G R+ Sbjct: 113 PRVTTHIPDIINFIQKLVDAGYAYEADGDVYFSVRKFKEYGKLSKRSIDELLAGARIEPG 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP WESPWG+GRPGWH EC AM +LG+ DIHGGGLDL F Sbjct: 173 EKKKDPLDFALWKSAKAGEPYWESPWGKGRPGWHTECCAMIFKHLGETIDIHGGGLDLTF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + A WIHNG + + G+KMSKS GN+I + E+ + Sbjct: 233 PHHENEIAQAEALTG-KPFARYWIHNGLVTVNGQKMSKSLGNYIKLKEIYS-------KY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------- 349 ++RL +L HYR P+DF+ ++ E + + +++ Sbjct: 285 EPDILRLLVLSVHYRSPLDFSWDKMEETKKAYERLKNAIEEAEVLNKLPIDENFEGDLYN 344 Query: 350 -------AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASA-- 389 SA+ +D NT A+ +L L RE D + + +A Sbjct: 345 AIQKAQSGFYSAMSDDFNTPEALASLFGLVREMNILRDKAIKHGGISKKAIESYKEAAKT 404 Query: 390 ------HILGIEVCKE------------HLNKNISIAIEKLVQERLILLKMKKFSSADYI 431 I G+ + I+ L++ R K K+F+ AD I Sbjct: 405 LHDIGRDIFGLFDSLQPCIKQEEVKVKEKEESINEDLIQVLIEAREKARKEKQFTIADLI 464 Query: 432 RKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R +L KG ILED T+WK+ Sbjct: 465 RDKLAEKGIILED------APFGTKWKK 486 >gi|307284103|ref|ZP_07564273.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|306503474|gb|EFM72723.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|315026628|gb|EFT38560.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2137] Length = 478 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|114570948|ref|YP_757628.1| cysteinyl-tRNA synthetase [Maricaulis maris MCS10] gi|122315352|sp|Q0AM03|SYC_MARMM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|114341410|gb|ABI66690.1| cysteinyl-tRNA synthetase [Maricaulis maris MCS10] Length = 461 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 194/477 (40%), Positives = 271/477 (56%), Gaps = 39/477 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++T+ R+ +F+ DP + MYVCGPTVY +AHIGNARP +VFD L+R+LR YG Sbjct: 2 TSLTLFDTMARRKRDFEPTDPGRVTMYVCGPTVYSYAHIGNARPAVVFDTLFRVLRRLYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y RNITD+DDKIIE AR+ I ITS + D L PT + Sbjct: 62 EDQVIYARNITDVDDKIIETARESGKPI------EDITSHYADIYRADMGALGVTLPTIE 115 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT+HIP+MI ++QN++ GHAYEA+ ++FD SS YG S R +D+ G RV Sbjct: 116 PHATDHIPEMIGMVQNLVYSGHAYEADGHVLFDVSSYEKYGRLSNRDLDDMIAGARVEVA 175 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++PADF+LWK + EPGW+SPWGRGRPGWH+ECSAMS +LGK DIHGGG DL+F Sbjct: 176 SYKRSPADFVLWKPAKDDEPGWDSPWGRGRPGWHLECSAMSEKHLGKTIDIHGGGTDLVF 235 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + AN W+HNGFL + KMSKS GN +++L+ + + Sbjct: 236 PHHENEIAQSVCAHKGAPMANYWLHNGFLTMGTDKMSKSLGNVQLVHDLI-------KDY 288 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------QTSTSKGIIDPAVLSAL 355 P V+R A+L HYR P+ +T L + L + + + + PA L AL Sbjct: 289 PGEVLRYALLTAHYRAPLTWTADLLAKTRRSLDRIYGVLRRLGEIEAAPSDVPPAFLEAL 348 Query: 356 YNDLNTVSAIQALHKLARESTKN------HDLLPIFNASAHILGIEVCKE-------HLN 402 ++DLNT A+ L +LA + K A+A +LG+ L+ Sbjct: 349 HDDLNTPKALSELFQLAGNANKALSDVEKAQAKGELLAAAGMLGLGQADPDAWFGLTDLD 408 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I+ L+ R + K + +AD +R +L + ++D G + W++ Sbjct: 409 PAERARIDDLIVRRQTAREEKDWPTADAVRDELNALKVQVDD------GPEGSTWRK 459 >gi|261252446|ref|ZP_05945019.1| cysteinyl-tRNA synthetase [Vibrio orientalis CIP 102891] gi|260935837|gb|EEX91826.1| cysteinyl-tRNA synthetase [Vibrio orientalis CIP 102891] Length = 436 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 167/458 (36%), Positives = 240/458 (52%), Gaps = 47/458 (10%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCG T+YD HIG+ R + FDV+ R LRY + +T+VRNITDIDDKII+RA + Sbjct: 1 MYVCGVTIYDLCHIGHGRTFVSFDVVSRYLRYLGYD--LTFVRNITDIDDKIIKRANEN- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 ++ +T + + D L P +PRAT +I ++I L++ +I G AY Sbjct: 58 -----GESCDSLTERLIGEMHADFDALNMKRPDVEPRATEYIKEIIELVETLIERGFAYV 112 Query: 148 AN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 A+ +++F+ + YG S + +++ + G RV + K++ DF+LWK S P EP WES Sbjct: 113 ADNGDVMFEIAKYDEYGKLSGQDLEQLQAGARVEIESAKRSSLDFVLWKMSKPGEPTWES 172 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG GRPGWHIECSAM+S LG FDIHGGG DL FPHHENEIAQSCCA + N W+ Sbjct: 173 PWGPGRPGWHIECSAMNSSILGNHFDIHGGGSDLQFPHHENEIAQSCCAHGT-QYVNTWM 231 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQR 326 H+G + ++ KMSKS GNF TI ++L + A +R ++ HYR ++++ Sbjct: 232 HSGMVMVDREKMSKSLGNFFTIRDVLG-------HYDAETVRYFLMSGHYRSQLNYSEDN 284 Query: 327 LTEAEILLSKWPQTSTSKGIIDPA---------VLSALYNDLNTVSAIQALHKLAREST- 376 L +A L + + + A A+ +D NT A L +ARE Sbjct: 285 LNQARSALERLYTSLRGLDLTVSAVGGEEYVARFNDAMNDDFNTPEAYSVLFDMAREINR 344 Query: 377 -KNHDLLPI------FNASAHILGIEVCKEHL-------NKNISIAIEKLVQERLILLKM 422 K D+ A ++GI N + IE L++ R Sbjct: 345 LKAEDVAAASSLGVTMRQLADVIGILHQDPEAFLKGDAGNDDEVAEIEALIKLRNDSRAS 404 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K +++AD R +L G +LED G T W++K Sbjct: 405 KDWANADMARDKLTEMGIVLED------GPEGTTWRRK 436 >gi|325126288|gb|ADY85618.1| Cys-tRNA synthetase cycrs [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 474 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 171/496 (34%), Positives = 256/496 (51%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E + + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEAGAE------GTTVPELAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 P-----------AVLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFN 386 P +A+ +D N +A+ A+++ N + Sbjct: 345 PNLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW ++ Sbjct: 465 T------PQGTRWSRE 474 >gi|17228587|ref|NP_485135.1| cysteinyl-tRNA synthetase [Nostoc sp. PCC 7120] gi|21264005|sp|Q8YXW5|SYC_ANASP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|17130438|dbj|BAB73049.1| cysteinyl-tRNA synthetase [Nostoc sp. PCC 7120] Length = 486 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 173/500 (34%), Positives = 249/500 (49%), Gaps = 58/500 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R+ + ++P ++MY CG TVYD+ H+G+AR IV+D + R L + Sbjct: 1 MTLTIYNTLTRRQEPLETVEPGKVKMYCCGVTVYDYCHLGHARSYIVWDTIRRYLIWRGF 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKI+ RA+++ ++ ++++ + D RL L Sbjct: 61 G--VKYIQNFTDIDDKILNRAKEQGL------TMAEVSNRFIDAYFADIRRLNVLDADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PR T HIP++ LIQ + G AY ++ + P+YG S R++++ + G Sbjct: 113 PRVTEHIPEIHQLIQILEEKGLAYAVGGDVYYRVERFPSYGKLSGRELEQMQAGASGRVD 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK + P EP W+SPWG GRPGWHIECSAM LG DIHGGG Sbjct: 173 AEDSEPKKQHPFDFALWKAAKPGEPAWDSPWGAGRPGWHIECSAMIRSKLGATIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET-KK 296 DLIFPHHENEIAQS A + A W HNG + + G+KMSKS GNFITI ELL+ Sbjct: 233 GDLIFPHHENEIAQSEAAMN-QPLARYWTHNGMVMVNGQKMSKSLGNFITIRELLDGVGS 291 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQT 340 + +RL +L HYR+P+DFT + + AE W Q Sbjct: 292 WKEDPVNPMAVRLFVLQAHYRKPLDFTEEAIATAENSWKTLKEGLLFGYQYGEKLGWGQE 351 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------P 383 S + +D N + L +LA+E + ++L Sbjct: 352 SAIIPELATRFQELGDDDFNFSGGLAVLFELAKELRREGNILVHEGTTKTPSDELQRQWN 411 Query: 384 IFNASAHILGIEVCKEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A ILG+E + + IE L+++R K K FS +D IR +L+++G Sbjct: 412 TLVTLAKILGLEAKLDDETQTQAGLSDTDIEALIEQRQAARKNKNFSESDRIRNELQAQG 471 Query: 440 FILEDYKNPDNGQRMTRWKQ 459 L D + TRW + Sbjct: 472 VTLIDS------PQGTRWHR 485 >gi|16799348|ref|NP_469616.1| cysteinyl-tRNA synthetase [Listeria innocua Clip11262] gi|21264012|sp|Q92F36|SYC_LISIN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|16412700|emb|CAC95504.1| cysteinyl-tRNA synthetase [Listeria innocua Clip11262] Length = 471 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L T Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKATVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + A W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFAKYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLSKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKDIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|293382260|ref|ZP_06628200.1| cysteine--tRNA ligase [Enterococcus faecalis R712] gi|293386691|ref|ZP_06631264.1| cysteine--tRNA ligase [Enterococcus faecalis S613] gi|312908762|ref|ZP_07767701.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|312979222|ref|ZP_07790926.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] gi|291080374|gb|EFE17738.1| cysteine--tRNA ligase [Enterococcus faecalis R712] gi|291083860|gb|EFE20823.1| cysteine--tRNA ligase [Enterococcus faecalis S613] gi|310625200|gb|EFQ08483.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|311287987|gb|EFQ66543.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] Length = 478 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILTFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|237743811|ref|ZP_04574292.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 7_1] gi|229432842|gb|EEO43054.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 7_1] Length = 472 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 182/492 (36%), Positives = 270/492 (54%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RAT++I +MI +IQ +I G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 RATDNIDEMIKIIQALIDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKRDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGNSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++ + G KMSKS G+F+ + ++L + + Sbjct: 234 PHHENEMAQSKCACGG-TFARYWMHNGYIKINGEKMSKS-GSFVLLRDIL-------KHF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L +HYR+P+DF+ + L + + L + T +D Sbjct: 285 EGRVIRLFVLGSHYRKPMDFSDEELNQTKSSLERIENTLKRIKELDRENIKGTDDCQELL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 + A+ D NT A+ + +L + K D I Sbjct: 345 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEANISKEGLEVIDEVYSYLVM 404 Query: 390 ---HILGIEV-CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ K +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 405 IIQDVLGVKLKLKVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 464 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 465 KDK------TTW 470 >gi|313124319|ref|YP_004034578.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280882|gb|ADQ61601.1| Cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 474 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 173/496 (34%), Positives = 257/496 (51%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E + + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARAE------GTTVPELAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSKENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFN 386 P +A+ +D N +A+ A+++ N + Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K N IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGNDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW ++ Sbjct: 465 T------PQGTRWSRE 474 >gi|225017556|ref|ZP_03706748.1| hypothetical protein CLOSTMETH_01483 [Clostridium methylpentosum DSM 5476] gi|224949706|gb|EEG30915.1| hypothetical protein CLOSTMETH_01483 [Clostridium methylpentosum DSM 5476] Length = 464 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 173/477 (36%), Positives = 259/477 (54%), Gaps = 50/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R+ EF+ I P+ + MY CGPTVY++ HIGNARP+IVFD L + + Sbjct: 1 MKVYNTLTRQKEEFKTIHPNEVDMYACGPTVYNYIHIGNARPIIVFDCLRSYFEFRGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII++A +E S I+ K +++ KD L T P+ Sbjct: 60 -VKFVQNFTDVDDKIIKKANEEGVEA------SEISEKYIKEYEKDAKGLNVRPATIHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I ++Q+++ +G+AYE+ ++ F T+ YG S +++ + G RV Sbjct: 113 VTQSMDMIIDIVQHLVDNGYAYESQGDVYFRTTKFKEYGKLSHMPLEDLEAGNRVEVSDI 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF +WK + P EP W+SPWG+GRPGWHIECSAM+++YLGK D+H GG DLIFPH Sbjct: 173 KEDPMDFAVWKAAKPGEPAWDSPWGKGRPGWHIECSAMATNYLGKTIDLHCGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS CA AN W+HNG++N++ RKMSKS GNF T+ E+ E + Sbjct: 233 HENEIAQSECATGA-VFANYWMHNGYINVDNRKMSKSLGNFFTVREVAEKFGY------- 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------------- 347 IR ML HYR PI++ V+ + + + L + + Sbjct: 285 EPIRYMMLQAHYRSPINYNVEVIEQCKASLERMYNFKKNIAFALSKAEDGEFTDKQKEAI 344 Query: 348 ---DPAVLSALYNDLNTVSAIQALHKLAREST----------KNHDLLP--IFNASAHIL 392 + A+ +D NT AI A+ +L R+ K H L IF+ +L Sbjct: 345 LARKQQFIDAMEDDFNTADAISAVFELIRDINPLISGETLGSKQHIALAKEIFDELIGVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 G+ + + I + LV++R K K F AD +R ++ G+ +E+ + Sbjct: 405 GLLYNDKE--EEIPAEVTALVEQRAAARKEKNFKLADELRDRIGELGYAIEETRQGT 459 >gi|296134921|ref|YP_003642163.1| cysteinyl-tRNA synthetase [Thiomonas intermedia K12] gi|295795043|gb|ADG29833.1| cysteinyl-tRNA synthetase [Thiomonas intermedia K12] Length = 460 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 189/476 (39%), Positives = 268/476 (56%), Gaps = 43/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R F I+P ++RMYVCG TVYD+ HIG+AR M+VFD+L R L+ Sbjct: 4 LHLHNTLTRGKDRFVPIEPGHVRMYVCGMTVYDYCHIGHARVMVVFDLLQRWLKAQGL-- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ + I +T + +D L PTH+PR Sbjct: 62 RVTYVRNITDIDDKIIRRAQEN------GETIRALTDRFIAAMHEDADALGVERPTHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ LI + G AY ++ ++ F + P YG S + +DE + G RV Sbjct: 116 ATDYVPQMLDLIGKLKTRGLAYRDSAGDVNFHVRAFPGYGKLSGKSLDELRAGERVEVDT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W S G GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKAAKPAEPEEVKWPSDDGPGRPGWHIECSAMSCALLGETFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN+W+HNGF+ ++G KMSKS GNF TI ++L + Sbjct: 236 QFPHHENEIAQSEGASG-KPMANVWLHNGFVRVDGEKMSKSLGNFFTIRDIL-------Q 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PA 350 A +RL ++ HYR P++++ + L +A L++ + A Sbjct: 288 HVDAETVRLFIVRAHYRSPLNYSDEHLQDAHAALTRLYTALDPFADLPARLDWSHPRAQA 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI------EVCKEHLN 402 +A+ +DLNT A+ L +LA E K + DL + +LG+ E + Sbjct: 348 FAAAMNDDLNTPEAMAVLFELATEVNKTGDADLAALLKGLGGVLGLLQQNPREFLQSKAA 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E+LVQER+ + + F+ AD IR +L +KG +LED +T W+ Sbjct: 408 AVDAAWVEQLVQERIAAKQARNFAEADRIRAELSAKGIVLEDKPGG-----ITVWR 458 >gi|323350502|ref|ZP_08086164.1| cysteine--tRNA ligase [Streptococcus sanguinis VMC66] gi|322123184|gb|EFX94869.1| cysteine--tRNA ligase [Streptococcus sanguinis VMC66] Length = 447 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVTALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + +N W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFSNYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKEAFAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQEARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|77413794|ref|ZP_00789974.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 515] gi|77160156|gb|EAO71287.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 515] Length = 447 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 163/468 (34%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D L T PR Sbjct: 61 -VNYISNFTDVDDKIIKGAAE------AGMDTKSFSDKFISAFMEDVAALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G E Sbjct: 114 VIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRVDGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT++++L + Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML-------KI 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 VIR + YR+P++FT + + +AE+ L T A Sbjct: 286 VDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNLKYLKNTFNLPIQENANDEELEQFVKAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + ++A+ H + I GI +E L+ + Sbjct: 346 QEAMDDDFNTANGITVIFEMAKWINSGHYTSKVKETLAELLEIFGIVFQEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R + F++AD IR +L +G L D K+ G R TR Sbjct: 402 IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTKD---GVRWTR 446 >gi|256956971|ref|ZP_05561142.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DS5] gi|257078648|ref|ZP_05573009.1| cysteinyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294780003|ref|ZP_06745382.1| cysteine--tRNA ligase [Enterococcus faecalis PC1.1] gi|256947467|gb|EEU64099.1| cysteinyl-tRNA synthetase [Enterococcus faecalis DS5] gi|256986678|gb|EEU73980.1| cysteinyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294452897|gb|EFG21320.1| cysteine--tRNA ligase [Enterococcus faecalis PC1.1] Length = 470 Score = 550 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVADRFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|227518065|ref|ZP_03948114.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|256964025|ref|ZP_05568196.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|257084048|ref|ZP_05578409.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Fly1] gi|227074501|gb|EEI12464.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|256954521|gb|EEU71153.1| cysteinyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|256992078|gb|EEU79380.1| cysteinyl-tRNA synthetase [Enterococcus faecalis Fly1] Length = 470 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 249/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|148244266|ref|YP_001218960.1| cysteinyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] gi|146326093|dbj|BAF61236.1| cysteinyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] Length = 462 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 181/483 (37%), Positives = 265/483 (54%), Gaps = 49/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ F I+ + + +YVCG TVYD+ H+G+AR +++FDV+ R LR ++ Sbjct: 2 LKIYNTLSKQKEIFHPINNNKVGIYVCGMTVYDYCHMGHARVLVMFDVITRHLRRHFSN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I +T++ +D L L P +PR Sbjct: 61 -VEYVRNITDIDDKIIKRA------VENKEDIYTLTNRFINAMHEDEHALGILPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN + Q+ +I+++I G AY+A N ++ + NYG FSR+ +++ ++G R+ + Sbjct: 114 ATNTMEQIFCMIKSLIEKGFAYQAHNGDVYYSVRHFKNYGKFSRKNLNKLEIGARIKVES 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK S P EP W SPWG+GRPGWHIECSAMS+H+LG FDIHGGG+DL FP Sbjct: 174 AKKDPLDFVLWKMSKPNEPSWSSPWGKGRPGWHIECSAMSTHHLGNHFDIHGGGMDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ NIW+H GF+N+ +KMSKS NF TI +L +++ Sbjct: 234 HHENEIAQSEGANNC-TFVNIWMHVGFVNINNKKMSKSLNNFFTIRNVL-------KNYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------------IIDPA 350 ++R ++ +HY P++F+ + L +A+ LS+ T Sbjct: 286 GEILRYFIMSSHYHSPLNFSDENLNKAKSSLSRLYTTIRGLNTSNVRTEEISIHFDYSVR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEV--CKEH 400 AL +D NT A+ L +LA+ + L + +GI + Sbjct: 346 FNEALDDDFNTPIALSVLFELAKIVNIQRENNTDQAKTLAQLLKKLGGYIGILQMNADKF 405 Query: 401 LNKNI---SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 L + I I + R K F+ +DYIR +L ILED N T W Sbjct: 406 LKQGISLSDEQINIKITNRNKARINKDFTLSDYIRDELAKFDIILEDNIN------GTTW 459 Query: 458 KQK 460 ++K Sbjct: 460 RKK 462 >gi|299533876|ref|ZP_07047243.1| cysteinyl-tRNA synthetase [Comamonas testosteroni S44] gi|298718160|gb|EFI59150.1| cysteinyl-tRNA synthetase [Comamonas testosteroni S44] Length = 461 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 253/478 (52%), Gaps = 44/478 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R + F ++P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR Sbjct: 1 MSLRIYNTLSRALESFSPLEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRASGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T + +D L PT + Sbjct: 61 K--VTYVRNITDIDDKIIKRA------VENGETIRSLTDRMIDALHQDADALGIERPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV Sbjct: 113 PRATEYVPQMLGMIARLQDKGLAYQAGNGDVNYAVRKFPGYGKLSGKSLDELNAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K +P DF+LWK + EP W+SP+G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 173 ADGKHDPLDFVLWKSAKADEPADVRWQSPFGEGRPGWHIECSAMGCELLGESFDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A W+HNGF+N++ KMSKS GNF TI ++L Sbjct: 233 DLQFPHHENEIAQSEGATG-KPFARTWMHNGFINVDNEKMSKSLGNFFTIRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + + A IR ++ +HYR P++++ L +A L + + Sbjct: 286 -KEYDAETIRFFVVRSHYRSPLNYSNVHLDDARGALKRLYTALDLVTPAEVQIDWSNPYA 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGI------EVCKEH 400 +A+ D T A+ L +LA E K+ ++ + A LG+ + + Sbjct: 345 ARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSPEVAGLLKALGACLGLLQAEPQKFLQAG 404 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + AIE + R K ++ AD IRK+L +G +L+D T W+ Sbjct: 405 AEGVDAAAIEAQIAARAEAKATKNWAEADRIRKELLDQGIVLKDSAA------GTTWE 456 >gi|169335260|ref|ZP_02862453.1| hypothetical protein ANASTE_01668 [Anaerofustis stercorihominis DSM 17244] gi|169257998|gb|EDS71964.1| hypothetical protein ANASTE_01668 [Anaerofustis stercorihominis DSM 17244] Length = 468 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 173/483 (35%), Positives = 255/483 (52%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF I+ + MYVCGPTVY+F HIGNARP I+FD L R L Y + Sbjct: 1 MKLYNTLTRKKEEFVPINEGEVNMYVCGPTVYNFFHIGNARPFIIFDTLRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TDIDDKII +A++EH + K +++ D L T PR Sbjct: 60 -VNYVQNFTDIDDKIINKAKEEHT------TSKAVADKYIKEYFTDAKGLGIKEATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 + I +I LI ++ +G+AY + + + S +YG S++ IDE G RV Sbjct: 113 VSECIGDIIDLISDLEKNGYAYNVDGNVYYRVSKFKDYGKLSKKPIDELISGARVEVNDE 172 Query: 185 KKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK+ E ++SPWG+GRPGWHIECSAMS YLG DIHGGG DLIFP Sbjct: 173 KESPLDFALWKKQKEDSEIAFDSPWGKGRPGWHIECSAMSRKYLGSTIDIHGGGEDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ + + ++HNG++N+ KMSKS GNF + ++ + + Sbjct: 233 HHENEIAQSEGANG-KDFVHYFVHNGYININNEKMSKSKGNFFMVRDI-------SKDFD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------------- 342 V+RL ML HY+ P++F+ L + + L++ T Sbjct: 285 LEVVRLFMLSAHYKTPVNFSFDILKQTQSGLNRLYNTKENLLYLLDKAKDKDLKEDEKEF 344 Query: 343 --SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAH 390 S +A+ +D+NT +A+ ++ L+++ N ++ Sbjct: 345 INSLPKYREEFKNAMEDDINTANAVSTIYDLSKDINSNVNENSSKEMIMKSYEMYMELNG 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LG+ + KE ++ + I +L+++R K K F+ AD IR L KG +LED + Sbjct: 405 VLGL-LTKEKEDEILEDEIIELIEKRQNARKNKDFALADKIRDDLLDKGIVLEDTREGVK 463 Query: 451 GQR 453 + Sbjct: 464 WHK 466 >gi|254480424|ref|ZP_05093671.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] gi|214039007|gb|EEB79667.1| cysteinyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] Length = 458 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 200/479 (41%), Positives = 279/479 (58%), Gaps = 44/479 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNT+ EF+ + + MYVCGPTVY+ AHIGNARP++VFD L+RLL+ YG Sbjct: 1 MSLKIYNTMSGAKEEFEPLVADTVTMYVCGPTVYNLAHIGNARPVVVFDTLFRLLQTQYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTY RNITD+DDKII A++ + +I +T + T ++ +D +L L P+ + Sbjct: 61 --SVTYARNITDVDDKIIAAAKE------GDRSIESVTDEYTAKYREDMAQLNALPPSLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT++I MI L +I GHAYE+ ++F S+ +YG S R ID+ G RV Sbjct: 113 PHATHNIDAMIELTSTLIEKGHAYESQGHVLFAVESMEDYGKLSNRSIDDMLAGARVQVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK + +PGW+SPWGRGRPGWH+ECSAM +LG+ DIHGGG DLIF Sbjct: 173 DYKRHPGDFVLWKPADITDPGWDSPWGRGRPGWHLECSAMIRAHLGETIDIHGGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + W+HN +L+++G KMSKS GNF T+ +LL +S+ Sbjct: 233 PHHENEIAQSRCAHGGD-YVKYWMHNAYLDIDGEKMSKSLGNFRTVRDLL-------QSY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLS 353 V+R A+L HYR P++F+V+ L +A L + T D Sbjct: 285 RGEVLRFALLSAHYRSPLNFSVELLEQARSNLDGFYGTLREVADMEIDVDVPLADEPFYQ 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGI--EVCKEHLNK--- 403 AL +DLNT AI LH LA++ K L A+ ++LGI + +E L Sbjct: 345 ALNDDLNTPLAIAELHALAKQLNKAAAEDKPQLKARIIAAGNLLGILGQDPEEWLQGDAA 404 Query: 404 ---NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + AIE L+QER+ + F+ AD IR L ++G +LED + T+WK+ Sbjct: 405 ADAISAEAIETLIQERVDAKANRNFARADEIRDSLLAEGVVLEDSR------EGTQWKR 457 >gi|254831936|ref|ZP_05236591.1| cysteinyl-tRNA synthetase [Listeria monocytogenes 10403S] Length = 471 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 250/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L + Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I +I +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQMISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG ++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGFKLENTQSDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|229550658|ref|ZP_04439383.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|229304224|gb|EEN70220.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] Length = 478 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITPPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------I 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQAAVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|329897619|ref|ZP_08272161.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC3088] gi|328921107|gb|EGG28515.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC3088] Length = 457 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 201/478 (42%), Positives = 275/478 (57%), Gaps = 43/478 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YNTL RK F+ P + MYVCGPTVY+ AHIGNARP++VFDVL+RLL+ Y Sbjct: 1 MDITLYNTLARKKERFEPRVPGEVTMYVCGPTVYNLAHIGNARPVVVFDVLFRLLQTQY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITDIDDKII AR+ + I +TS+ TQ+F +D L L PT + Sbjct: 60 -QTVRYARNITDIDDKIITAARERA------EPIDAVTSEFTQKFREDVAALGTLPPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT+++ MI +++ ++ HAYEA+ ++F +S+PNYG S R +D+ G RV Sbjct: 113 PHATHNLGPMIAMVEALLAKNHAYEADGHVLFSVTSMPNYGELSGRNLDDMLAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK + EPGWESPWGRGRPGWH+ECSAM +LG DIHGGG DLIF Sbjct: 173 DYKRHPGDFVLWKPAADDEPGWESPWGRGRPGWHLECSAMIHEHLGLEIDIHGGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA W+HN +++++G KMSKS GNF TI ELL + Sbjct: 233 PHHENEIAQSCCAYGGS-YVRYWMHNAYIDIDGEKMSKSLGNFKTIRELLGL-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLS 353 V+R A+L HYR ++F+ + L ++E L+ +D + + Sbjct: 285 RGEVLRFALLSAHYRSSLNFSKELLDQSENALNGLYNALRKVESVDAVGPESVEQESWYA 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGI------EVCKEHLN 402 AL +D+NT AI LH+L E K D + A A +LGI + + + Sbjct: 345 ALCDDVNTPLAISELHQLISELNKADDSDKASIKGRILACASLLGILQSAPSDWLRGDDS 404 Query: 403 KNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + +S I+ LV ER+ K ++ AD IR L G +LED T W++ Sbjct: 405 EGLSAEAIDALVAERVEAKAAKNYARADEIRTVLTEAGVVLEDS------PSGTTWRR 456 >gi|315174139|gb|EFU18156.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1346] Length = 478 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 171/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------I 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQAAVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 FN I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FNGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|146328731|ref|YP_001209134.1| cysteinyl-tRNA synthetase class I [Dichelobacter nodosus VCS1703A] gi|166200146|sp|A5EWG6|SYC_DICNV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146232201|gb|ABQ13179.1| cysteinyl-tRNA synthetase class I [Dichelobacter nodosus VCS1703A] Length = 456 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 174/466 (37%), Positives = 252/466 (54%), Gaps = 35/466 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YN+L R+ F I P+++ MYVCG TVYDF HIG+AR M+VFD + R LR + Sbjct: 4 LHLYNSLSRQKEPFHPITPNHVMMYVCGMTVYDFCHIGHARVMVVFDTIARHLRASGYQ- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITDIDDKII RA + N+ I +T + +D L CL P+ +P+ Sbjct: 63 -LTYVRNITDIDDKIIRRAAEN------NEPIQALTQRFINAMHEDEAALGCLPPSIEPK 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ +MI +I +I HAY A+ ++ + S YG + R++++ + G R+ Sbjct: 116 ATEYVAEMIAMIGELIAQNHAYIADNGDVYYSVRSFDEYGKLANRRLEDLRAGERIAINE 175 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK++ EP WESPWG GRPGWHIECS MS H LG FDIHGGG+DL FP Sbjct: 176 AKNDPLDFVLWKKAKTGEPSWESPWGAGRPGWHIECSVMSRHQLGDHFDIHGGGMDLKFP 235 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHE EIAQS + N W+HNGF+N++ KMSKS GNF T+ ++L +++ Sbjct: 236 HHECEIAQSEPVCGGKH-VNYWLHNGFINIDNEKMSKSLGNFFTVRDVL-------KNYA 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------DPAVLSAL 355 VIR ML +HYR P++++ L EA+ L + + ++A+ Sbjct: 288 GEVIRFFMLQSHYRGPVNYSDAALEEAKRGLQRLYTALETAPTTGGAILLPYQERFVAAM 347 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLP-----IFNASAHILGI-----EVCKEHLNKNI 405 +D NT AI L +LA+ K A LG+ + + Sbjct: 348 DDDFNTPQAIAVLFELAKMLNKAAAAEAADIAFTLRTLAARLGLLTGDAKTLFQQKGALS 407 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 + IE + R K +++AD IR++L + G L+D Sbjct: 408 AAEIEAEIARRQAAKAAKDYATADSIREKLSALGIELKDSATGTQW 453 >gi|260495810|ref|ZP_05815931.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_33] gi|260196657|gb|EEW94183.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_33] Length = 472 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 184/492 (37%), Positives = 271/492 (55%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRDYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT++L +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKLNLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 RAT++I +MI +IQ +I G+AYE+N ++ F+ + + YG S++ I++ + G R+ Sbjct: 114 RATDNIDEMIKIIQALIDKGYAYESNGDVYFEVNKYKDGYGELSKQNIEDLESGARINVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EVKRDPLDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGNSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++ + G KMSKS G+FI + ++L + + Sbjct: 234 PHHENEMAQSKCACGG-TFARYWMHNGYIKINGEKMSKS-GSFILLRDIL-------KHF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L +HYR+P+DF+ + L + + L + T +D Sbjct: 285 EGRVIRLFVLGSHYRKPMDFSDEELNQTKSSLERIENTLKRIKELDRENIKGTDDCQELL 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 + A+ D NT A+ + +L + K D I S Sbjct: 345 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEANISKKSLEVIDEVYSYLVM 404 Query: 390 ---HILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 405 IIQDVLGVKLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 464 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 465 KDK------TTW 470 >gi|256618484|ref|ZP_05475330.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] gi|256598011|gb|EEU17187.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] Length = 470 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKTFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------IFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQAAVSEPILVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|325685668|gb|EGD27750.1| cysteine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 474 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 173/496 (34%), Positives = 257/496 (51%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E + + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARAE------GTTVPELAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSKENLEQAANILGRFKNTLEGINYRLADETEGLPD 344 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFN 386 P +A+ +D N +A+ A+++ N + Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K N IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGNDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW ++ Sbjct: 465 T------PQGTRWSRE 474 >gi|159029961|emb|CAO90340.1| cysS [Microcystis aeruginosa PCC 7806] Length = 480 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 169/499 (33%), Positives = 254/499 (50%), Gaps = 62/499 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F + P + MY CG TVYD+ H+G+AR +V+DV+ R L Y Sbjct: 1 MTLILYNTLSRREEPFTPLIPGIVSMYCCGITVYDYCHLGHARTCVVWDVVRRYLEYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y++N TDIDDKI+ RA+ EH ++ + K Q + +D +L Sbjct: 61 K--VRYIQNFTDIDDKILNRAKNEHT------TMAAVAEKFIQAYFEDMAKLGVRPADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG------ 176 PRAT+ + + L+ + G+AY ++ ++ + +YG S RK+D+ + G Sbjct: 113 PRATHTLDGIKRLVYELEQKGYAYPSDGDVYYSVRRFSDYGKLSGRKLDDLQAGASGRVE 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 T PE K++P DF LWK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH G Sbjct: 173 TDDPEAIKKQDPFDFALWKGAKPGEPSWDSPWGQGRPGWHIECSAMVKEQLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A+ W+HNG + + G KMSKS GNFITI ELL Sbjct: 233 GSDLIFPHHENEIAQSEAATG-KPLAHYWLHNGMVKVAGEKMSKSLGNFITIRELLA--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STS 343 + +RL +L YR+PIDF+ + L A + + + Sbjct: 289 ----KYDPLAVRLLILGAQYRKPIDFSDEGLQAATNGWHTLQEGLSFGYKHLPPDNPAIT 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------------IFN 386 ++ A+ +D N + L ++A+E K + L Sbjct: 345 DQELENRFQEAVNHDFNFAGGLAVLFEIAKELRKEGNNLTHAGKTDSNLAQLAVKWHTLV 404 Query: 387 ASAHILGIEVCKEHLNKNIS-----IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + +LG+E+ + +S IE L+Q+R K K ++ +D IR +L+++G Sbjct: 405 KLSRVLGLEIAADQGETPVSEGISAAEIENLIQQRTEAKKAKNYAESDRIRAELKAQGIT 464 Query: 442 LEDYKNPDNGQRMTRWKQK 460 L D +T+W ++ Sbjct: 465 LIDQPGG-----VTKWLRE 478 >gi|257417468|ref|ZP_05594462.1| cysteinyl-tRNA synthetase [Enterococcus faecalis AR01/DG] gi|300862011|ref|ZP_07108091.1| cysteine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|257159296|gb|EEU89256.1| cysteinyl-tRNA synthetase [Enterococcus faecalis ARO1/DG] gi|295112378|emb|CBL31015.1| cysteinyl-tRNA synthetase [Enterococcus sp. 7L76] gi|300848536|gb|EFK76293.1| cysteine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] Length = 470 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 249/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|289433593|ref|YP_003463465.1| hypothetical protein lse_0224 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169837|emb|CBH26375.1| cysS [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 471 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 171/485 (35%), Positives = 250/485 (51%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIKAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S + + E + G RV Sbjct: 115 VTENMDEIIQLINTLIEKGYAYESAGDVYFRTKKFEDYGKLSGQALSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DLIFPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 235 HEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDNDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------PQT 340 VIR ML HYR+PI L +A+ L + + Sbjct: 287 NVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHQDEW 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASA 389 + A + +D NT +AI H+LA+ + + L + A Sbjct: 347 LEQLTELKHAFEEDMDDDFNTANAITTFHELAKRANIYLSKEVVSVNVLREFLSMMRLFA 406 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG+++ +E L++ERL + F+ AD IR L+ K ILED Sbjct: 407 EVLGLKLEYTQTESLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQGT 466 Query: 450 NGQRM 454 +R Sbjct: 467 RFRRG 471 >gi|313620930|gb|EFR92103.1| cysteinyl-tRNA synthetase [Listeria innocua FSL S4-378] Length = 471 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 250/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L + Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + A W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFAKYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLSKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ERL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKDIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|312903154|ref|ZP_07762335.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|310633545|gb|EFQ16828.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|315163378|gb|EFU07395.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0645] gi|315578631|gb|EFU90822.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0630] Length = 478 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIGVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|238855655|ref|ZP_04645955.1| cysteine--tRNA ligase [Lactobacillus jensenii 269-3] gi|260664903|ref|ZP_05865754.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|282933604|ref|ZP_06338973.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] gi|238831721|gb|EEQ24058.1| cysteine--tRNA ligase [Lactobacillus jensenii 269-3] gi|260561386|gb|EEX27359.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|281302259|gb|EFA94492.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] Length = 473 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 174/494 (35%), Positives = 249/494 (50%), Gaps = 61/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 1 MKIYNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E + + + F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAE------GITVPELAKRYINAFMEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G AYE + ++ + YG S + I + G Sbjct: 113 ATEEIKDIIAFIKTLIEKGFAYEVDGDVYYRAKKFTGYGKLSDQDIASLEEGASQHVNEA 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K++P DF LWK+ E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EFAKKEDPIDFALWKKQKQSDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + +KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKDEQKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR+PI+++ + L +A I+L K T Sbjct: 287 --KRVDPQVLRFFMASVQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLKETNSQENQ 344 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + + A+ +D N +A+ ++ L KN L Sbjct: 345 DLTIAIEDSENRFKEAMDDDFNVQNALSVVYDLLPVINKNISEDTSDLSALRKFLQHLEK 404 Query: 388 SAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 I G+++ K K + IE+LV++R K K F+++D IR QL IL+D Sbjct: 405 WLAIFGVDIDKLTTEKVSDDDAEIEELVKKRDEARKNKDFATSDTIRDQLAEMNIILQDT 464 Query: 446 KNPDNGQRMTRWKQ 459 + T+W++ Sbjct: 465 ------PKGTKWRR 472 >gi|329121962|ref|ZP_08250574.1| cysteine--tRNA ligase [Dialister micraerophilus DSM 19965] gi|327467260|gb|EGF12763.1| cysteine--tRNA ligase [Dialister micraerophilus DSM 19965] Length = 481 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 246/500 (49%), Gaps = 64/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IK+YNTL+R+ F+ I+ +++YVCG T Y+ HIGNARP + +D++ R L Y Sbjct: 2 EEIKVYNTLKREKQIFKPIEEGKVKIYVCGVTPYNHPHIGNARPAVTWDIIRRYLEYIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +++N TD+DDKII +A E ++++ + K L Sbjct: 62 --HVDFIQNFTDVDDKIINKANAEKSDW------KTVSTRYIDAYFKVMDALHIRRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P + H+ +I +++ +I GHAY N++ +D S+ +Y S RK+++ G RV Sbjct: 114 PYVSKHMEDIIDMVKTLIEKGHAYVLGNDVYYDISTFKDYCKLSGRKVEDMLAGARVMVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP WESPWG GRPGWHIECS MS+HYLG FD HGGG DLIF Sbjct: 174 TAKRNPGDFALWKGAKPGEPFWESPWGNGRPGWHIECSVMSTHYLGATFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGATGQK-FVKYWLHNGFITINSEKMSKSLNNFFLVKDVLE-------KY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-------------- 348 +R +L THYR P+DF+ +RL EAE +SK ++ Sbjct: 286 SGDALRYFLLSTHYRSPLDFSDERLEEAEKNMSKLKDVIARIKEMEKEDGKVETNESVSL 345 Query: 349 --------PAVLSALYNDLNTVSAIQALHKLARESTKNH---------------DLLPIF 385 A+ +D NT A L ++ + + F Sbjct: 346 KKAAARTIEEFRQAMNDDFNTGLATGVLFDFVKDINIYYNAVNSGVAIEKEAVIEAKETF 405 Query: 386 NASAHILGIEVCKEHLNK-----NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ILGI + + + + +E ++ R K K++ AD IR +L G Sbjct: 406 KTILDILGILESEWNTQESYAGSDYDALMEMILSVRETARKEKQYKLADEIRDKLAELGI 465 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 I+ED RWK++ Sbjct: 466 IVEDSAT------GARWKKR 479 >gi|307708306|ref|ZP_07644773.1| cysteinyl-tRNA synthetase [Streptococcus mitis NCTC 12261] gi|307615752|gb|EFN94958.1| cysteinyl-tRNA synthetase [Streptococcus mitis NCTC 12261] Length = 447 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 168/468 (35%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSAKSGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L ++ Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDAL-------KN 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +AE L T + Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVNAQELQAFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + A + GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKEALAAMLEVFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD+IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADHIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|218245339|ref|YP_002370710.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8801] gi|226735051|sp|B7JUH4|SYC_CYAP8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218165817|gb|ACK64554.1| cysteinyl-tRNA synthetase [Cyanothece sp. PCC 8801] Length = 484 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 167/504 (33%), Positives = 255/504 (50%), Gaps = 68/504 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ + ++ IRMY CG TVYD+ H+G+AR +V+DV+ R L++ Sbjct: 1 MTLTVYNTLTRRKEPLETLETGKIRMYCCGITVYDYCHLGHARTCMVWDVVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKI+ RARQE + ++ + + + +D L Sbjct: 61 E--VQYIQNFTDIDDKILNRARQE------GTTMEAVSDRFIEAYFEDMEHLHVQKADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----- 177 PRAT+ + + L+ + G+AY++N ++ + +YG S RK+++ + G Sbjct: 113 PRATHTLNGIKRLVSELEAKGYAYQSNGDVYYSVRHFKDYGKLSGRKLEDLQAGASGRVE 172 Query: 178 -RVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 + PE KK+P DF +WK + P EP W+SPWG+GRPGWHIECSAM LG+ DIH G Sbjct: 173 VQDPEAAKKKDPFDFAVWKAAKPGEPSWDSPWGQGRPGWHIECSAMVRERLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A W+HNG + +EG KMSKS GNFITI +LL+ Sbjct: 233 GSDLIFPHHENEIAQSEAATG-KPLARYWLHNGMVKVEGEKMSKSLGNFITIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 +RL +L HYR+P+DFT + L A + Sbjct: 289 ----KVDPMAMRLFILQAHYRKPVDFTDEALEAATNGWHTLKEGLLFGYNHGKQLNFTAS 344 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL--------------- 382 + + A+ +D N + L ++A+E K ++L Sbjct: 345 PPHPLTSSPLTQRFQQAVDDDFNFAGGLAILFEIAKELRKEGNILVHQGQTETSPQVLEE 404 Query: 383 --PIFNASAHILGIEVCKEHLNKNI-----SIAIEKLVQERLILLKMKKFSSADYIRKQL 435 A +LG+E + + + IE+L+++R I + K ++ D +R +L Sbjct: 405 QWRTLVELAGVLGLETDISEVQEAVGNGLSDAEIEELIEQRKIARQNKNYAEGDRLRDEL 464 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQ 459 +++G IL D +T W + Sbjct: 465 KNQGIILVDQPGG-----ITTWHR 483 >gi|306832715|ref|ZP_07465852.1| cysteine--tRNA ligase [Streptococcus bovis ATCC 700338] gi|304425171|gb|EFM28300.1| cysteine--tRNA ligase [Streptococcus bovis ATCC 700338] Length = 448 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 163/470 (34%), Positives = 249/470 (52%), Gaps = 39/470 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 1 MTIKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+ N TD+DDKII+ A + + + K F++D +L T Sbjct: 61 K--VNYISNFTDVDDKIIKGAAE------VGMDTKAFSDKFIAAFMEDVKQLGVKPATKN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---V 179 PR +++ ++I ++ ++ G AYEAN ++ F + NY + + + + ++G Sbjct: 113 PRVIDYMDEIIDFVKVLVDKGFAYEANGDVYFRVAKSQNYAKLANKTLADLEVGASGRVD 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG D Sbjct: 173 GEGEIKENPLDFALWKSAKPGEVSWQSPWGEGRPGWHIECSVMATTILGDTIDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L Sbjct: 233 LEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDML------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP 349 ++ V+R + YR+P++FT + + +A + L T + Sbjct: 285 KNVDGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLTEEADAAELAKFKA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNIS 406 +A+ +D NT + I + +A+ N + F + GI +E L+ + Sbjct: 345 DFEAAMDDDFNTANGITVIFDMAKWINSGNYNQAVKDTFAKMLAVFGIVFEEEVLDAD-- 402 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR QL ++G L D K+ G R TR Sbjct: 403 --IEALIEKRQAARANKDFATADAIRDQLAAQGIKLLDTKD---GVRWTR 447 >gi|322386163|ref|ZP_08059796.1| cysteine--tRNA ligase [Streptococcus cristatus ATCC 51100] gi|321269743|gb|EFX52670.1| cysteine--tRNA ligase [Streptococcus cristatus ATCC 51100] Length = 447 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 243/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITSQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVEFMGDIIRFVEDLIDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +A L T S Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVYDAATNLKYLKNTYEQPFTGQAESAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAKVKAALAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|312901251|ref|ZP_07760534.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|311291628|gb|EFQ70184.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0470] Length = 478 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 169/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KDMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +D L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDAQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|78048109|ref|YP_364284.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|109894961|sp|Q3BSH9|SYC_XANC5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78036539|emb|CAJ24230.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 476 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 197/496 (39%), Positives = 267/496 (53%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIATGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWPSPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALEAESGSDLAVSMT 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNH-DLLPIFNASAHI-------------- 391 V SAL +DLNT A+ + +A ++ DL+ ASA + Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSDLMQSGQASARMIELHAARAKLLGAG 405 Query: 392 --LGIEVCKEHL------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 LG+ + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFSRGTDAGDDARITALVEERSAAKKAKDFARADAIRKQLAEEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|218961048|ref|YP_001740823.1| cysteinyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] gi|167729705|emb|CAO80617.1| cysteinyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] Length = 469 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 184/488 (37%), Positives = 260/488 (53%), Gaps = 54/488 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT RK EFQ I P + +Y CGPTVY++ HIGNAR I FDV+ R Y E Sbjct: 1 MLLYNTQTRKKEEFQPITPGKVGIYACGPTVYNYFHIGNARAFIFFDVVRRYFTYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+NITDIDDKII +A +E N + +++ K T+ F+ DT+ L PT+QP+ Sbjct: 60 -VTYVQNITDIDDKIIAQANEE------NISFTLVAEKYTRAFLDDTSALGIKPPTYQPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT + +I I + G+AYE ++ F T ++P+YG S +K +EQ G RV E Y+ Sbjct: 113 ATEVMDDIIAFIAELEKKGYAYEVEGDVYFATENLPSYGCLSGKKTEEQLAGARVMENYN 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++PADF LWK+ P EP WESPWG+GRPGWH EC MS YLG+ FDIH GG+DLIFPH Sbjct: 173 KRHPADFTLWKKGKPGEPVWESPWGKGRPGWHTECVVMSQKYLGETFDIHCGGIDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQ+ + AN W+HNGFLN++G KMSKS NF T ++L + A Sbjct: 233 HENELAQAMAYSG-KPLANYWMHNGFLNVDGEKMSKSLKNFFTARDILA-------EYDA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------------------TSTSK 344 IR L HYR PIDF+ + + E++ ++ T+ Sbjct: 285 ESIRFFFLSKHYRSPIDFSRELMEESQRAVANLYSSLAEINYPENAENRRPTVCGTAQEL 344 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARES-TKNHDLLPIFNA------SAHILG-IEV 396 ++ + A+ +D NT AI L +L R+ + + +A +LG + Sbjct: 345 QNLEQEFILAMDDDFNTAKAISLLFELNRKVKNTSATMADRISAAIKMVELGSVLGFFQN 404 Query: 397 CKEHLNKNISIAIEKLVQE----RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + L + + + L+ R K ++ AD IR L G ++D Sbjct: 405 LEAKLKQKMPDLSKDLICLILSYRKEARDKKDWALADKIRNDLAQLGIEIKDT------P 458 Query: 453 RMTRWKQK 460 +W K Sbjct: 459 EGVKWTLK 466 >gi|171058353|ref|YP_001790702.1| cysteinyl-tRNA synthetase [Leptothrix cholodnii SP-6] gi|170775798|gb|ACB33937.1| cysteinyl-tRNA synthetase [Leptothrix cholodnii SP-6] Length = 457 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 180/476 (37%), Positives = 252/476 (52%), Gaps = 45/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+N+L R++ F++I+P ++RMYVCG T+YD HIG+AR M+ FDV+YR LR Sbjct: 1 MRIHNSLSRELETFKSIEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVYRWLRASG--W 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA + I +T + +D L PTH+PR Sbjct: 59 RVTYVRNITDIDDKIIRRA------VERGITIRQLTDEMIDAMHRDIGALGIERPTHEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I + G AY + N ++ + YG S + +D+ + G RV Sbjct: 113 ATEYIPQMLSMISTLESKGLAYRSGNGDVNYAVRRFEGYGKLSGKSLDQLRAGERVAVAD 172 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP ++SP+G GRPGWHIECSAMS LG+ FDIHGGGLDL Sbjct: 173 GKEDPLDFVLWKSAKPQEPDDAKYDSPYGPGRPGWHIECSAMSCALLGETFDIHGGGLDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A W+HNGFLN++ KMSKS GNF TI ++L + Sbjct: 233 QFPHHENEIAQSEGALG-HSWVPTWMHNGFLNVDNEKMSKSLGNFFTIRDVL-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-----------P 349 S+ +R ML YR P +F+ L +A L++ + D Sbjct: 285 SYDGETVRFFMLRVQYRSPFNFSDAGLDDARSSLTRLYTALDGVAVDDASEIDWTHPAAA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGIE------VCKEHL 401 +A+ +D NT A+ L LA E +N D + +LG+ + Sbjct: 345 RFKAAMDDDFNTPIAVSVLFDLAGEVNRNKDAGTAGLLKRLGAVLGVLQQSPRTFLQGDT 404 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 I++ + ER + F+ AD IR L ++G L+D + T W Sbjct: 405 GGLDEAHIQQQIGERQAAKAARNFAEADRIRLALAAQGITLKDT------PQGTTW 454 >gi|22536391|ref|NP_687242.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|77405339|ref|ZP_00782434.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae H36B] gi|30316157|sp|Q8E1Z4|SYC_STRA5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|22533218|gb|AAM99114.1|AE014201_12 cysteinyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|77176017|gb|EAO78791.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae H36B] Length = 447 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 247/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D L T PR Sbjct: 61 -VNYISNFTDVDDKIIKGAAE------AGMDTKSFSDKFISAFMEDVAALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G E Sbjct: 114 VIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRVDGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG+GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT++++L +S Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML-------KS 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 VIR + YR+P++FT + + +AE+ L T A Sbjct: 286 VDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNLKYLKNTFNLPIQENANDEELEQFVKAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + ++A+ H + F I GI +E L+ + Sbjct: 346 QGAMDDDFNTANGITVIFEMAKWINSGHYTSRVKETFAELLEIFGIVFQEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R + F++AD IR +L +G L D K+ G R TR Sbjct: 402 IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTKD---GVRWTR 446 >gi|313625379|gb|EFR95169.1| cysteinyl-tRNA synthetase [Listeria innocua FSL J1-023] Length = 471 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 51/487 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y Sbjct: 1 MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +V N TD+DDK+I A + ++P + + + D +L T Sbjct: 61 D--VKFVSNFTDVDDKLIRAANELKLTVP------EVADRFIGAYFDDVDQLNVAKATVN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++I LI +I G+AYE+ ++ F T +YG S +++ E + G RV Sbjct: 113 PRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQELSELQHGARVEYN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DL+F Sbjct: 173 ERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EIAQS A + A W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 233 PHHEDEIAQSEAATG-KTFAKYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDN 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------P 338 VIR ML HYR+PI L +A+ L + Sbjct: 285 DPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEETHED 344 Query: 339 QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + A + +D NT +AI H+LA+ + + L + Sbjct: 345 EWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLSKETVSINVLREFLSMMRL 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A +LG+++ + +E L++ RL + F+ AD IR L+ K ILED Sbjct: 405 FAEVLGLKLENTQTDSLDDSEVEALIEARLQARNERNFARADEIRDILKEKDIILEDTAQ 464 Query: 448 PDNGQRM 454 +R Sbjct: 465 GTRFRRG 471 >gi|289168428|ref|YP_003446697.1| cysteinyl-tRNA synthetase [Streptococcus mitis B6] gi|288907995|emb|CBJ22835.1| cysteinyl-tRNA synthetase [Streptococcus mitis B6] Length = 447 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++ +I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEELIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKLGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFSGTVDAQELQAFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + + GI +E L+ + Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|307276290|ref|ZP_07557417.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|306507033|gb|EFM76176.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|315149012|gb|EFT93028.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4244] gi|315168265|gb|EFU12282.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1341] Length = 478 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVADRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|104774470|ref|YP_619450.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077205|sp|Q1G8Z0|SYC_LACDA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|103423551|emb|CAI98469.1| Cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 474 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 171/496 (34%), Positives = 256/496 (51%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E + + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEAGAE------GTTVPELAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ IP +I IQ +I G+AYEA+ ++ + T +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRTKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS N +T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDEEKMSKSLHNCVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFN 386 P +A+ +D N +A+ A+++ N + Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW ++ Sbjct: 465 T------PQGTRWSRE 474 >gi|294338858|emb|CAZ87192.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Thiomonas sp. 3As] Length = 460 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 188/476 (39%), Positives = 266/476 (55%), Gaps = 43/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R F I+P ++RMYVCG TVYD+ HIG+AR M+VFD+L R L+ Sbjct: 4 LHLHNTLTRGKDRFVPIEPGHVRMYVCGMTVYDYCHIGHARVMVVFDLLQRWLKAQGL-- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA+ + I +T + +D L PTH+PR Sbjct: 62 RVTYVRNITDIDDKIIRRAQDN------GETIRALTDRFIAAMHEDADALGVERPTHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++PQM+ LI + G AY ++ ++ F + P YG S + +DE + G RV Sbjct: 116 ATDYVPQMLDLIGKLKTRGLAYRDSAGDVNFHVRAFPGYGKLSGKSLDELRAGERVEVDT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF+LWK + P EP W S G GRPGWHIECSAMS LG+ FDIHGGG DL Sbjct: 176 AKQDPLDFVLWKAAKPAEPEEVKWPSDDGPGRPGWHIECSAMSCALLGETFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A + AN+W+HNGF+ ++G KMSKS GNF TI ++L + Sbjct: 236 QFPHHENEIAQSEGASG-KPMANVWLHNGFVRVDGEKMSKSLGNFFTIRDIL-------Q 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PA 350 A +RL ++ HYR P++++ + L +A L++ + A Sbjct: 288 HVDAETVRLFIVRAHYRSPLNYSDEHLQDAHAALTRLYTALDPFAELPARLDWSHPRAQA 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGI------EVCKEHLN 402 +A+ +DLNT A+ L +LA E K + DL + +LG+ E + Sbjct: 348 FAAAMNDDLNTPEAMAVLFELATEVNKTGDADLAALLKGLGGVLGLLQQNPREFLQSKAA 407 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +E+LVQ R+ + + F+ AD IR +L +KG +LED +T W+ Sbjct: 408 AVDAAWVEQLVQARIAAKQARNFAEADRIRAELSAKGIVLEDKPGG-----ITVWR 458 >gi|306830478|ref|ZP_07463648.1| cysteine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427503|gb|EFM30605.1| cysteine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 448 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 163/470 (34%), Positives = 248/470 (52%), Gaps = 39/470 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 1 MTIKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+ N TD+DDKII+ A + + K F++D +L T Sbjct: 61 K--VNYISNFTDVDDKIIKGAAE------AGMDTKAFSDKFIAAFMEDVKQLGVKPATKN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---V 179 PR +++ ++I ++ ++ G AYEAN ++ F + NY + + + + ++G Sbjct: 113 PRVIDYMDEIIDFVKVLVDKGFAYEANGDVYFRVAKSQNYAKLANKTLADLEVGASGRVD 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG D Sbjct: 173 GEGEIKENPLDFALWKSAKPGEVSWQSPWGEGRPGWHIECSVMATTILGDTIDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L Sbjct: 233 LEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDML------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP 349 ++ V+R + YR+P++FT + + +A + L T + Sbjct: 285 KNVDGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLTEEADAAELAKFKA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNIS 406 +A+ +D NT + I + +A+ N + F + GI +E L+ + Sbjct: 345 DFEAAMDDDFNTANGITVIFDMAKWINSGNYNQAVKDTFAKMLAVFGIVFEEEVLDAD-- 402 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR QL ++G L D K+ G R TR Sbjct: 403 --IEALIEKRQAARANKDFATADAIRDQLAAQGIKLLDTKD---GVRWTR 447 >gi|297587609|ref|ZP_06946253.1| cysteine--tRNA ligase [Finegoldia magna ATCC 53516] gi|297574298|gb|EFH93018.1| cysteine--tRNA ligase [Finegoldia magna ATCC 53516] Length = 462 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 250/478 (52%), Gaps = 47/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLYNTLTRKKEEFKPIKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC-LAPTHQP 123 V +V N TDIDDKII +A+ E + IT K Q ++ + + L T P Sbjct: 59 NVKFVSNFTDIDDKIINKAKDE------DIDFREITKKYIQAYLDNVSGLNFDEEDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATEYIDEMIKFVKTLEDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNS 172 Query: 184 HKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK+ EP WESPWG GRPGWH+ECS MS LG DIH GG DL F Sbjct: 173 EKKNPMDFALWKKRKEESEPAWESPWGMGRPGWHLECSVMSKSILGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS AN W+HN + ++ KMSKS NF + ++ + + Sbjct: 233 PHHENEIAQSETCTGAH-FANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EKEF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------QTSTSKGIID--- 348 VIRL +L HYR PIDF+ L + L + +S +G D Sbjct: 285 DLEVIRLWLLSVHYRNPIDFSHDTLVATKNSLERLYTAKKFLNRILENSSEKEGSDDNIQ 344 Query: 349 ---PAVLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHILGIE 395 A+ +D+NT AI L + KN+D + + +++LGI Sbjct: 345 SFREKFEQAMDDDINTSDAISVLFDFIKYINKNYDENTSKNILTEAKKLMDDISYVLGIL 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 +E + ++ IE L+++R K K F AD IR +L S G +L+D ++ +R Sbjct: 405 FKEE--DDDLDSEIEDLIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRDGVIWER 460 >gi|226944443|ref|YP_002799516.1| cysteinyl-tRNA synthetase [Azotobacter vinelandii DJ] gi|259511824|sp|C1DHE6|SYC_AZOVD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|226719370|gb|ACO78541.1| cysteinyl-tRNA synthetase [Azotobacter vinelandii DJ] Length = 461 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 184/480 (38%), Positives = 262/480 (54%), Gaps = 46/480 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IY+TL + F+ ++ + +RMYVCG TVYDF HIG+AR M+ FDV+ R LR+ Sbjct: 1 MTLSIYSTLSKGKEAFKPLEGNKVRMYVCGMTVYDFCHIGHARVMVAFDVVSRWLRHSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + ++ + + +D RL L P + Sbjct: 61 D--VTYVRNITDIDDKIIRRANEN------GESFQDLVGRMIAAMHEDEARLNVLRPDSE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+HI M +I+ +I +AY N ++ + YG SRRKI++ K+G R+ Sbjct: 113 PRATDHIAGMHAMIRTLIDKSYAYAPGNGDVYYRVGKFEGYGKLSRRKIEDLKIGARIEP 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF+LWK + P EP WESPWG GRPGWHIECS MS+ LG+ FDIHGGG DL+ Sbjct: 173 GEAKEDPLDFVLWKGAKPGEPSWESPWGAGRPGWHIECSVMSTCCLGETFDIHGGGPDLV 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A ++ ANIW+H G + ++G KMSKS GNF TI E+LE Sbjct: 233 FPHHENEIAQSEAATG-KRYANIWMHAGAVRVDGEKMSKSLGNFFTIREVLE-------K 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP--------AVLS 353 + V+R ++ +HYR PI+++ L EA L ++ P + Sbjct: 285 YHPEVVRYLLVSSHYRSPINYSEDSLREARAALERFYNALKGLPAAQPTGGDEYVARFNA 344 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 A+ +D NT A L +LARE ++ DL + +A + + L ++ Sbjct: 345 AMNDDFNTPEACAVLFELAREVNRLRDTDLQSAASLAARLKELGGLLGVLQLEPEAFLQA 404 Query: 412 LVQERLILLKM-------------KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +R+ ++ K ++ +D IR QL + G +LED KN T W+ Sbjct: 405 GAADRVDAAEVEALIAARLAARAGKNWAESDRIRDQLAAMGVLLEDGKN------GTTWR 458 >gi|242398167|ref|YP_002993591.1| Cysteinyl-tRNA synthetase [Thermococcus sibiricus MM 739] gi|242264560|gb|ACS89242.1| Cysteinyl-tRNA synthetase [Thermococcus sibiricus MM 739] Length = 468 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 178/487 (36%), Positives = 240/487 (49%), Gaps = 60/487 (12%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + ++ EF+ + IRMYVCGPTVYD+ H+G+AR I FDV+ R L + V V Sbjct: 1 MTKQKEEFKPLRDDEIRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEHKGY--TVLMVM 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TDIDDKII RA + + + K + F++D L PR T HI Sbjct: 59 NFTDIDDKIIRRANE------TGEDPKELAEKFLKYFLEDMKALKVKPADIYPRVTEHIQ 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 +I ++ + G+AY +++ + F+ YG S+ +++ + G RV KKNP D Sbjct: 113 DIIEFVRKLEEKGYAYGSSDGVYFEVRKYEKYGKLSKVNLEDLRKGVRVEPGEGKKNPED 172 Query: 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 F LWK++ P EP WESPWG GRPGWHIECS MS+ YLG+ FDIHGGG DLIFPHHENEIA Sbjct: 173 FALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPHHENEIA 232 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 Q+ E W H GF+ + G KMSKS GNF+TI ELL + + VIR Sbjct: 233 QTEACTGKE-WVKYWFHTGFVMVSGEKMSKSLGNFVTIRELL-------QRYSPEVIRFF 284 Query: 311 MLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------------------- 351 +L HYR P+D+T + + A+ L + T + I V Sbjct: 285 VLQKHYRSPLDYTEEGIQHAKNNLERLYNTIENIRIAMEKVEVPFKWEKEEFELYETIRD 344 Query: 352 -----LSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNASAHILGI 394 A+ +D NT A++ + ++A L F + + GI Sbjct: 345 AKKKLYEAMDDDFNTAEAMKPIFEVANAVNAYLTKVEKPKESVLRKALEFFRIISEVFGI 404 Query: 395 --EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 E KE IE L++ R L K K F AD IR QL G LED Sbjct: 405 FEEYFKEAKETKEEELIELLIEVRSALRKQKNFELADKIRAQLRELGIQLEDT------P 458 Query: 453 RMTRWKQ 459 + T WK+ Sbjct: 459 QGTIWKR 465 >gi|307268962|ref|ZP_07550326.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|307287137|ref|ZP_07567208.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|306501735|gb|EFM71026.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|306514770|gb|EFM83321.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|315033512|gb|EFT45444.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0017] gi|315036335|gb|EFT48267.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0027] gi|315165683|gb|EFU09700.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1302] gi|329576209|gb|EGG57727.1| cysteine--tRNA ligase [Enterococcus faecalis TX1467] Length = 478 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVADRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|324996026|gb|EGC27937.1| cysteine--tRNA ligase [Streptococcus sanguinis SK678] Length = 447 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPKEVADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 SA+ D N + I + +LA+ + F + GI +E L+ + Sbjct: 346 TSAMDEDFNAANGITVVFELAKWINSGNYTAQVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQMARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|229547086|ref|ZP_04435811.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|312952479|ref|ZP_07771347.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|229307815|gb|EEN73802.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|310629575|gb|EFQ12858.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|315153507|gb|EFT97523.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0031] gi|315155078|gb|EFT99094.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0043] gi|315158521|gb|EFU02538.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0312] Length = 478 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KDMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVADRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|163791190|ref|ZP_02185607.1| cysteinyl-tRNA synthetase [Carnobacterium sp. AT7] gi|159873521|gb|EDP67608.1| cysteinyl-tRNA synthetase [Carnobacterium sp. AT7] Length = 468 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 169/491 (34%), Positives = 248/491 (50%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK F I+ +RMYVCGPTVY++ HIGNAR + FD + R L Y + Sbjct: 2 LKIYNTLTRKKEAFIPIEEGKVRMYVCGPTVYNYIHIGNARSTVAFDTVRRYLEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII A++ +N + K + +DT L +H PR Sbjct: 61 -VNYVSNFTDVDDKIIRTAKE------LNLTAPEVADKFIAAYHEDTHALGVEEASHHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 ++P +I I +I +AYE + ++ + T NYG S IDE ++G Sbjct: 114 VMENMPDIIDFIAVLIEKEYAYEVDGDVYYRTRKFKNYGELSDISIDELEVGASNRLNAQ 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E WESPWG GRPGWHIECS M++ YLG DIH GG DL Sbjct: 174 ENNKKEDPLDFALWKAAKEAEINWESPWGPGRPGWHIECSVMATKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A+ W+HNGF+ ++ KMSKS GNF+ +++++ + Sbjct: 234 AFPHHENEIAQSEAKTG-HPFAHYWMHNGFVTMDNEKMSKSLGNFVLVHDII-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPA 350 ++R M T YR PI ++ + EA L+K + + + G D Sbjct: 286 QVDPQILRFFMATTQYRRPISYSETTIEEARANLTKITMAFDNVTYRLKDAAAVGEDDQE 345 Query: 351 -----------VLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 ++ + +D N+ + I ++++A+ + +L F Sbjct: 346 QISQFKLFKENFVTEMDDDFNSANGITVIYEMAKAMNIYSERTVVSKVVLEAMLHQFQEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + GI + L + IE+L++ER K F +D IR QL+ +G IL+D Sbjct: 406 VQVFGITFGETEL---LDETIEQLIEERNAARAAKNFQRSDDIRDQLKEEGIILDDT--- 459 Query: 449 DNGQRMTRWKQ 459 + TRW++ Sbjct: 460 ---PQGTRWRR 467 >gi|282899565|ref|ZP_06307529.1| Cysteinyl-tRNA synthetase, class Ia [Cylindrospermopsis raciborskii CS-505] gi|281195444|gb|EFA70377.1| Cysteinyl-tRNA synthetase, class Ia [Cylindrospermopsis raciborskii CS-505] Length = 488 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 180/506 (35%), Positives = 256/506 (50%), Gaps = 69/506 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R+ EF+ ++P +RMY CG TVYD+ H+G+AR IV+DV+ R L + Sbjct: 1 MTLSIYNTLTRRQEEFKPVEPGQVRMYYCGVTVYDYCHLGHARACIVWDVVRRYLEFIGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKI+ RAR+E N + + + Q + +D RL Sbjct: 61 --RVRYIQNFTDIDDKILNRARKE------NSTMETVAERYIQAYFEDMGRLGVREADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--- 179 PRAT+ + + LIQ++ + G+AY A+ ++ + YG S RK+ + + G Sbjct: 113 PRATHTMNGIKRLIQDLEVRGYAYPADGDVYYAVRKFNEYGKLSGRKLADLQAGASERVN 172 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 PE KK+P DF LWK + P EP WESPWG+GRPGWHIECSAM LG DIH G Sbjct: 173 IEDPEYQKKKDPFDFALWKAAKPCEPAWESPWGKGRPGWHIECSAMVRDRLGDTIDIHAG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS + AN W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 233 GADLIFPHHENEIAQSEAVTG-KPLANYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------Q 339 R +RL +LM YR+P+DFT + + A Q Sbjct: 289 ---RGVDPMALRLFVLMAQYRKPLDFTEEAILAATNGWHTLKEGLLFGYHHGAKLDWDLQ 345 Query: 340 TSTSKGIID----PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------- 382 ++ ID +A+ +D N + + ++A+E K +++ Sbjct: 346 SAKDNTNIDQVEIEKFTTAVDDDFNFPGGLAVIFEIAKELRKEGNIIVHEGKTQTPCAKL 405 Query: 383 ----PIFNASAHILGIEVCKEH----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +LG+ E IE LVQ+R K K F+ +D IR++ Sbjct: 406 LTKWQTLVTLTSVLGLIAKPEEQKTIDESLSDKVIENLVQKRQEARKAKDFAESDRIREE 465 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L++KG L D K TRW+++ Sbjct: 466 LKAKGITLIDSK------EGTRWQRE 485 >gi|302390937|ref|YP_003826757.1| cysteinyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] gi|302203014|gb|ADL11692.1| cysteinyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] Length = 481 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 179/501 (35%), Positives = 254/501 (50%), Gaps = 67/501 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL +K EF+ +D +++Y CGPTVYD+ HIGNAR I+ D+L R L Y Sbjct: 1 MTLQIYNTLTQKKEEFEPLDQDEVKLYSCGPTVYDYFHIGNARAFILPDILKRYLEYKGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +V N TD+DDK+I+RA +E I + + + +DT RL Sbjct: 61 N--VLHVTNFTDVDDKMIKRANEEEIEIEE------LADRFITAYFEDTERLNIKQADVY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI +I L++ + G+AYE + ++ F +YG S ++++E G+RV Sbjct: 113 PKATEHISDIIELVKKLEDKGYAYEVDGDVFFAVRKFADYGKLSNQELEELTSGSRVEVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF+LWK+S EP WESPWG GRPGWHIECSAMS YLG+ FD H GG+DL+F Sbjct: 173 DKKEDPLDFVLWKKSKEGEPSWESPWGTGRPGWHIECSAMSMCYLGEEFDFHTGGVDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + N W+HNG++N++G KMSKS GNF T ++L + + Sbjct: 233 PHHENEIAQNEAGVG-SQVVNYWLHNGYINVDGEKMSKSLGNFFTTRDIL-------QDY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 A V+R ++ HYR PI+F+ L A L + T + Sbjct: 285 SAEVLRFFLISKHYRSPINFSDAELDNAAKSLQRLQNTVNKLKDLLDRDRADLKPGNKEE 344 Query: 348 -----------DPAVLSALYNDLNTVSAIQALHKLARESTK----------------NHD 380 A+ +DLNT AI ALH+LA+E Sbjct: 345 LQELEKKIKAKREKFEEAMDDDLNTALAIGALHELAKELNIVVNDADFELNQANIIVLEK 404 Query: 381 LLPIFNASA-HILGIEVCKEHL--NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 F + +LGI + E + S I L++ R + + + AD IR +L Sbjct: 405 AYDTFKELSQQVLGINLETEDDISDNLTSDLIGLLLEVRNKARQNQDWELADQIRDELSE 464 Query: 438 KGFILEDYKNPDNGQRMTRWK 458 G ILED + T WK Sbjct: 465 LGIILEDT------PQGTDWK 479 >gi|291333822|gb|ADD93505.1| cysteinyl tRNA synthetase [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 458 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 189/478 (39%), Positives = 264/478 (55%), Gaps = 42/478 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YN+L + F +DP + MYVCGPTVY+F HIGNARP +VFD L+R+L+ Y Sbjct: 1 MSLVLYNSLTKAKQPFVPLDPERVTMYVCGPTVYNFVHIGNARPAVVFDTLFRVLQRLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y RNITDIDDKI+ A + + + IS ++++ Q + D + L CL P+ Sbjct: 60 -PQVVYARNITDIDDKIMNTAAE------LGEDISQLSTRFAQAYFDDMSALNCLEPSIV 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT HIP+MI ++Q ++ GHAY A ++F S+ +YG+ S R +++ G RV Sbjct: 113 PYATAHIPEMISMVQRLVDKGHAYVAEGNVLFAVESMADYGALSGRSLEDMMAGARVEIA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K+ DF+LWK ST EPGW+SPWGRGRPGWH+ECSAM +LG DIH GG DLIF Sbjct: 173 SYKRYAGDFVLWKPSTDHEPGWDSPWGRGRPGWHLECSAMIEKHLGVTIDIHAGGQDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA + AN W+HNGF+N++G KMSKS GNF +N+LL + + Sbjct: 233 PHHENEIAQSCCAHDGQPFANYWLHNGFINIDGEKMSKSLGNFRMVNDLL-------KQY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAV------LSALY 356 P V+R +L +HYR +F L A L + + AL Sbjct: 286 PGEVLRYVILSSHYRSEQNFGKDLLDSAWRSLDSLYGYLRGLPETEAVIDRDSISFKALL 345 Query: 357 NDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEVC----------KEHL 401 +DLNT AI L++LA+E D L A ++G+ Sbjct: 346 DDLNTPVAISELYRLAKEMHTASDSEKAALHSELMGLAELMGLLQQDPEQWFKQSRDGEA 405 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+ +R K ++ AD +R+QL +G +LED + T W++ Sbjct: 406 ESISEAEIERLIAKRQQAKADKDYAGADQVREQLLEQGVVLEDSR------EGTSWRR 457 >gi|83592028|ref|YP_425780.1| cysteinyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] gi|109894932|sp|Q2RWK2|SYC_RHORT RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|83574942|gb|ABC21493.1| cysteinyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] Length = 459 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 200/480 (41%), Positives = 267/480 (55%), Gaps = 45/480 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + I+NT+ R F+ +DP ++R+YVCGPTVYD AHIGNARP+IVFD+L Sbjct: 1 MTLHIHNTMTRTKEVFEPLDPGHVRLYVCGPTVYDRAHIGNARPVIVFDLLA--RLLRRL 58 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKI RA I IT + T+ F +D L L P + Sbjct: 59 YPQVTYVRNITDVDDKINARASAS------GRTIGEITEETTRLFHEDMAELGALPPDVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI M+ +I+ +I GHAYEA ++F S+ YGS S R +D+ G RV Sbjct: 113 PRATAHIADMVAMIERLIAKGHAYEAEGHVLFSVPSMGAYGSLSGRSMDDMIAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++PADF+LWK S PGW+SPWGRGRPGWHIECSAMSS YLG FDIHGGGLDLIF Sbjct: 173 PYKRDPADFVLWKPSDASLPGWDSPWGRGRPGWHIECSAMSSRYLGPSFDIHGGGLDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C + A W+HNG+L +EG KMSKS GNF+T+ +LL+ Sbjct: 233 PHHENEIAQSVCCNGPGTFARYWMHNGYLMVEGEKMSKSLGNFVTVRDLLD-------QA 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGIIDPAVLSAL 355 P +RLAML THYR+P D+T + L +A L + + S + V++AL Sbjct: 286 PGEAMRLAMLGTHYRQPFDWTAEGLEQARRGLDRLYSALRRVAGIAASPAEVPEGVMAAL 345 Query: 356 YNDLNTVSAIQALHKLARESTKNHDLLPI----------------FNASAHILGIEVCKE 399 +DLNT A+ ++ L + F A + + Sbjct: 346 CDDLNTPKALAEVYDLLGVLNRATTTEEQAKAKGALLAAGALLGLFQADPEV-WLCGAGT 404 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + ++ +E L+ +R + + F+ AD IR +L G +LED G T W++ Sbjct: 405 GEEEGLAARVEDLICQRKAARQARDFARADAIRDELTQAGIVLED------GPNGTTWRK 458 >gi|319939876|ref|ZP_08014231.1| cysteinyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] gi|319810887|gb|EFW07206.1| cysteinyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] Length = 447 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 246/471 (52%), Gaps = 42/471 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLRKFVPLEEGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPKEVADKYIAAFREDVTTLGVQPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ +I +Q ++ G AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVDYMMDIIDFVQVLVDKGFAYESEGDVYFRVEKSSNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TTRKENPVDFALWKAAKPGEIFWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +AE+ L T G +D Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAEVNLKYLKNTYEQPFTGTVDLTELQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + ++A+ H ++ F + GI E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFEMAKWINSGHYSQEVKTAFAELLQVFGIVFTAEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+++R K F++AD IR +L +KG L D K+ RW + Sbjct: 402 IEALIEQRQAARVAKDFATADKIRDELAAKGIKLLDTKD------GVRWIR 446 >gi|300769737|ref|ZP_07079619.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492645|gb|EFK27831.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 506 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 175/484 (36%), Positives = 252/484 (52%), Gaps = 53/484 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 34 VANMLSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYC 93 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T Sbjct: 94 GY--HVDYVSNFTDVDDKLIKRAAEDHTTVP------AVADRFIKAFMEDTTAVNIEPAT 145 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PRA+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G Sbjct: 146 VHPRASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQH 205 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E K++P DF LWK + P E WESPWG GRPGWHIECS MS+ YLG FDIHGG Sbjct: 206 TADEETDRKEDPIDFALWKAAKPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGG 265 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 G DL FPHHENEIAQS + AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 266 GQDLEFPHHENEIAQSEAKTG-KTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKT 324 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGI 346 V+R M T YR PI +T L EA L K + Sbjct: 325 V-------DPQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNG 377 Query: 347 IDPAVLS-----------ALYNDLNTVSAIQALHKLARESTKNH-----------DLLPI 384 D AV A+ +D N + + A+++LA+ + L Sbjct: 378 TDTAVAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAKATVQKETLIALQEA 437 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + G+ + AI+ L+ ER K K F+ AD IR L+++G ILED Sbjct: 438 LVQLTGVFGVTFETANAT-LADDAIQALIDEREAARKAKDFAKADQIRDDLKAQGIILED 496 Query: 445 YKNP 448 Sbjct: 497 TPQG 500 >gi|315143639|gb|EFT87655.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX2141] Length = 478 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|297568576|ref|YP_003689920.1| cysteinyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296924491|gb|ADH85301.1| cysteinyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 494 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 174/509 (34%), Positives = 265/509 (52%), Gaps = 75/509 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I I+NT + + ++ +++MYVCG T YD+ HIG+AR ++VFD++YR L++ Sbjct: 1 MPILIHNTKTARKEKLAPLEEGHVKMYVCGITAYDYCHIGHARSVLVFDMIYRYLQHRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+VRN TDIDDKII+RA+++ + ++ + +F +D T L L PT + Sbjct: 61 --RVTFVRNFTDIDDKIIKRAQEQ------GTTCTELSQRFIAKFHEDMTALNTLPPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT H+P+MI +I+ ++ AYEA ++ + YG S R +++ + G RV Sbjct: 113 PLATEHLPEMIAMIEELVAKDLAYEAQGDVYYRVQRFAGYGVLSGRGLEDMQAGARVAVN 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK S P EP W+SPWG GRPGWHIECSAM YLG+ FDIHGGG DL+F Sbjct: 173 DNKEHPMDFVLWKASKPGEPAWDSPWGPGRPGWHIECSAMGKKYLGETFDIHGGGKDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + AN+W+H+GF+ ++ KMSKS GNF+TI E+LE Sbjct: 233 PHHENEIAQSEGASG-KSFANLWVHHGFVTIKDEKMSKSLGNFLTIREVLERH------- 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 PA +RL + THYR P+D++ L +AE L++ + Sbjct: 285 PAEALRLFVFSTHYRNPLDYSETALQDAEAALTRIYSALAATAQLPGAAGDPSPSASVVG 344 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL--------------- 382 ++ + A+ D N+ A+ + + K L Sbjct: 345 EKDRDKLAKLEQSFHQAMDIDFNSALALGRIFDAIKIINKVRQALPANPAPQDLQLLQQT 404 Query: 383 -PIFNASAHILG---------IEVCKEHLNKNIS---IAIEKLVQERLILLKMKKFSSAD 429 + G +E ++ L +S IE L+++R + K ++ AD Sbjct: 405 AATIRDLTAVFGLAQEEPVSWLEKRQQRLLAQLSIKPAEIEALLEQREQARRDKDWAEAD 464 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IR QL + +++D G T+W+ Sbjct: 465 RIRDQLLQQRIVIKD------GPDGTKWE 487 >gi|327533897|gb|AEA92731.1| cysteine--tRNA ligase [Enterococcus faecalis OG1RF] Length = 478 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KDMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILTFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|170733433|ref|YP_001765380.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] gi|229558621|sp|B1JUK8|SYC_BURCC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169816675|gb|ACA91258.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] Length = 465 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 178/484 (36%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D T L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDETALGIQRPDVE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + +YG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQAADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ EP W S +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKRAKEDEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDTLALDWNEPHG 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 SGAAQAGGLAADEIEAQIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|59712207|ref|YP_204983.1| cysteinyl-tRNA synthetase [Vibrio fischeri ES114] gi|71657967|sp|Q5E4F1|SYC_VIBF1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|59480308|gb|AAW86095.1| cysteinyl-tRNA synthetase [Vibrio fischeri ES114] Length = 461 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 173/482 (35%), Positives = 254/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVISRYLRFLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + D L P +PR Sbjct: 61 -LTFVRNITDIDDKIIKRAAEN------GETCDALTERLIADMHADFDALNMKRPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--PE 181 AT +I ++I L++ +I G AY A N +++F+ YG SR+ +++ + G+RV E Sbjct: 114 ATEYIKEIIALVERLIERGFAYVASNGDVMFEVKKYDEYGCLSRQDLEQLQAGSRVTLEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 174 ASVKRSGMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGDHFDIHGGGSDLM 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 234 FPHHENEIAQSCCAHDT-PYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------H 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + + +R ++ HYR ++++ + L +A L + T Sbjct: 286 YDSETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLSVTPAGGEEFVGRFS 345 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L ++ARE + L + A +LG+ + Sbjct: 346 TAMNDDFNTPEAYSVLFEMAREVNRLKTENIDTASKLGALMRELADVLGLLSQEPEAFLQ 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L++ R K +++AD R + + +LED G T W+ Sbjct: 406 GGSSNDDVAEIEALIKARNDARAAKDWAAADAARDAIAALNIVLED------GPEGTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >gi|332526279|ref|ZP_08402408.1| cysteinyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2] gi|332110113|gb|EGJ10741.1| cysteinyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2] Length = 457 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 255/478 (53%), Gaps = 43/478 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++NTL R++ F ++P +RMYVCG TVYD H+G+AR + FDV+YR L+ Sbjct: 1 MTLRLHNTLTRRLETFVPLEPGRVRMYVCGITVYDLCHMGHARMNLAFDVVYRWLKASGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRNITDIDDKII RA + I +T + +D L PTH+ Sbjct: 61 E--VTYVRNITDIDDKIIRRALERGVGI------RALTDEMVAAMHRDFAALGLEPPTHE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +PQM+ +I + +G AY A + ++ F P YG S + +DE + G RV Sbjct: 113 PRATEFVPQMLDIIGRLERNGLAYRAEDGDVNFAVRRFPGYGKLSGKSLDELRAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + P EP W+SP+G GRPGWHIECSAMS LG+ FD+HGGG+ Sbjct: 173 AGGKEDPLDFVLWKSAKPEEPAEAKWDSPFGAGRPGWHIECSAMSCALLGERFDLHGGGM 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A N W+HNGFLN++ KMSKS GNF TI ++L Sbjct: 233 DLQFPHHENEIAQSEGAFG-HPFVNYWLHNGFLNVDNEKMSKSLGNFFTIADVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII----------D 348 + + +R ML THYR P +F L EA L + + Sbjct: 286 -KKFDGETVRFFMLRTHYRSPFNFADSLLDEARAALRRLYTALDGADAVACEVDWSDPRA 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGI-----EVCKEHL 401 A +A+ +D NT A+ L +LA E ++ D + + +LGI + Sbjct: 345 AAFKAAMDDDFNTPGALAVLFELANEFNRSRDAAMARLLVSLGAVLGILQQAPRAFLQAG 404 Query: 402 NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I + ++ R + ++F+ AD IR +L ++G L+D + T W + Sbjct: 405 TGVDDAEIARQIEARATAKRERRFADADRIRAELAAQGVELKDT------PQGTTWVR 456 >gi|169830402|ref|YP_001716384.1| cysteinyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] gi|229558630|sp|B1I0T1|SYC_DESAP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169637246|gb|ACA58752.1| cysteinyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 478 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 174/499 (34%), Positives = 247/499 (49%), Gaps = 66/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL + F DP + +YVCGPT Y+F H+GNAR ++VFD + R + Y Sbjct: 1 MQIFNTLTGRKETFCPRDPGRVSIYVCGPTTYNFIHLGNARALVVFDTIRRY--FLYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII R+R+E + +K ++ D L P+ Sbjct: 59 RVLYIQNFTDVDDKIINRSREE------GIDPQTLAAKYVDEYFVDADALNVRRADVHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++HIP++I LI II G AY A ++ F YG S+R +D+ G RV Sbjct: 113 VSDHIPEIIALITMIIDRGLAYVAGGDVYFAVRKFGGYGRLSKRSLDDLLAGARVEVGEQ 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + P EP WESPWGRGRPGWHIECSAM+ YLG FDIHGGG DLIFPH Sbjct: 173 KRDPLDFALWKAAKPGEPWWESPWGRGRPGWHIECSAMALKYLGTGFDIHGGGADLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS A E A WIHNGF+ + KMSKS GN + EL R +P Sbjct: 233 HENEIAQSEGATG-EPFARYWIHNGFITIREEKMSKSLGNVFLVREL-------TRLYPP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------------QTS 341 +RL +L HYR P+D+ + + + +++ + Sbjct: 285 EALRLFLLSNHYRNPLDYDPEAMEASVRAVNRLKTCLGLLRESLDRPAPDGDGGGGNRLE 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------HDLLPIFNASA 389 ++ +A+ +D NT A + L E L +F+A Sbjct: 345 AVLEVLQGRFEAAMDDDFNTALAQAVMFDLTHEVNTYLHQNDRPSRGALQKALDLFDAFN 404 Query: 390 HILGIEV--------CKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +LGI ++ ++S ++ L+ R + K F++AD IR L + G Sbjct: 405 RVLGIFPEHKGRIVLEAGAVSGDLSQGLLDLLIALRQDARRNKDFATADRIRDGLRALGI 464 Query: 441 ILEDYKNPDNGQRMTRWKQ 459 +LED + RWK+ Sbjct: 465 LLEDT------PQGVRWKK 477 >gi|329999154|ref|ZP_08303351.1| cysteine--tRNA ligase [Klebsiella sp. MS 92-3] gi|328538407|gb|EGF64532.1| cysteine--tRNA ligase [Klebsiella sp. MS 92-3] Length = 444 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 167/442 (37%), Positives = 238/442 (53%), Gaps = 42/442 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVALVDRMIAEMHKDFDALNILRPDSEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I + + +I GHAY A+ +++FD + PNYG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 VKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA E N W+H+G + ++ KMSKS GNF T+ ++L + + Sbjct: 234 HHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPAVLSA 354 A IR ++ HYR ++++ + L +A L + + + + A Sbjct: 286 AETIRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKSVDAAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL----- 401 + +D NT A L +ARE + + A +LG+ + Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFLQSG 405 Query: 402 ---NKNISIAIEKLVQERLILL 420 + IE L+Q+RL Sbjct: 406 AQVDDAEVAEIESLIQQRLDAR 427 >gi|324992446|gb|EGC24367.1| cysteine--tRNA ligase [Streptococcus sanguinis SK405] gi|327462791|gb|EGF09113.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1057] Length = 447 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 169/468 (36%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVCRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +A L T S Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQAESAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTSEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|269837621|ref|YP_003319849.1| cysteinyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786884|gb|ACZ39027.1| cysteinyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] Length = 468 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 179/489 (36%), Positives = 245/489 (50%), Gaps = 52/489 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ +T + F+ I+P +RMYVCGPTVYD AHIG+A IVFDVL R L Y Sbjct: 1 MTLRLTDTRTGEQRPFEPIEPGVVRMYVCGPTVYDDAHIGHAMSAIVFDVLRRYLEYSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V + +N TD+DDKII+RA + + + + +++DT RL T Sbjct: 61 --RVIHAQNFTDVDDKIIQRAAT------LGIEPRELAERLIEDWLRDTARLNVKPATIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT I +I +I+ +I GHAY ++ F S P YG S R +DE G R+ Sbjct: 113 PRATQEIDTIIEMIKGLIAEGHAYAVEGGDVFFRVDSFPGYGKLSHRSLDEMMAGARIEV 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P EP W+SPWG GRPGWHIECSAM +LG DIHGGG DLI Sbjct: 173 DPRKENPMDFALWKGAKPGEPAWDSPWGPGRPGWHIECSAMIYRHLGDRIDIHGGGADLI 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS E A W+HNG L L G KMSKS GN ITI ELLE Sbjct: 233 FPHHENEIAQSEAFTDQEPLARFWVHNGLLQLGGEKMSKSLGNLITIRELLERG------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------------------ 343 R +L +HYR P+ F+ + + A L++ Sbjct: 287 -DGEAFRFLVLSSHYRSPLTFSDEAMDSARRGLARLQSAVRGFDPATAPATAPDHALARI 345 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------PIFNASAHILG 393 +A+ +DLNT A+ L +LAR + D + A +LG Sbjct: 346 ADETRAEFRAAMDDDLNTPVALSHLFELARAINRERDAGAPAAAVAYAQSVLKELAGVLG 405 Query: 394 --IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 +E + ++ I ++ L++ R L K + + AD IR +L G +ED Sbjct: 406 LTLETTTQRTDEAIEPFVDLLLEVRAELRKQRLWDLADRIRVRLGELGIRVEDT------ 459 Query: 452 QRMTRWKQK 460 + + W+++ Sbjct: 460 AQGSTWRRE 468 >gi|76787565|ref|YP_328938.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae A909] gi|77410936|ref|ZP_00787292.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae CJB111] gi|109894950|sp|Q3K3G5|SYC_STRA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|76562622|gb|ABA45206.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae A909] gi|77162991|gb|EAO73946.1| cysteinyl-tRNA synthetase [Streptococcus agalactiae CJB111] Length = 447 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 164/468 (35%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ + MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLQDFIPLNEGKVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYCGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + K F++D L T PR Sbjct: 61 -VNYISNFTDVDDKIIKGAAE------AGMDTKSFSDKFISAFMEDVAALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I ++ ++ AYEAN ++ F S +Y + + +++ ++G E Sbjct: 114 VIDYMDEIIDFVKVLVDKEFAYEANGDVYFRVSKSHHYAKLANKTLEDLEIGASGRVDGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG+GRPGWHIECS M++ G DIHGGG DL Sbjct: 174 GEIKENPLDFALWKSAKSGEVSWESPWGKGRPGWHIECSVMATEIFGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT++++L +S Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFITVHDML-------KS 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 VIR + YR+P++FT + + +AE+ L T A Sbjct: 286 VDGQVIRFFLATQQYRKPVNFTEKAVHDAEVNLKYLKNTFNLPIQENANDEELEQFVKAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + ++A+ H + F I GI +E L+ + Sbjct: 346 QGAMDDDFNTANGITVIFEMAKWINSGHYTSRVKETFAELLEIFGIVFQEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R + F++AD IR +L +G L D K+ G R TR Sbjct: 402 IESLIEQRQEARANRDFATADRIRDELAKQGIKLLDTKD---GVRWTR 446 >gi|325981668|ref|YP_004294070.1| cysteinyl-tRNA synthetase [Nitrosomonas sp. AL212] gi|325531187|gb|ADZ25908.1| cysteinyl-tRNA synthetase [Nitrosomonas sp. AL212] Length = 459 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 183/480 (38%), Positives = 262/480 (54%), Gaps = 48/480 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN++ R+ +F I P +++YVCG TVYD+ H+G+AR ++VFD + R + Sbjct: 2 LKIYNSIAREKQDFVPITPGKVKLYVCGMTVYDYCHLGHARVLVVFDTVVRWFEA--NDF 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA++ N++I +T + Q +D+ L +PTH+P Sbjct: 60 TVNYVRNITDIDDKIIKRAQEN------NESIEALTQRFIQAMNEDSVALGVSSPTHEPC 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+H+ MI +I ++ AY+A N ++ F + P YG S + +++ + G RV Sbjct: 114 ATHHVKSMIGMISTLVEKNLAYQAHNGDVYFSVHNFPGYGKLSGKSLNDLRAGERVDIDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + EP WESPWG GRPGWHIECSAM +LG+ FDIHGGG DL FP Sbjct: 174 SKKDPLDFVLWKSAKSGEPFWESPWGPGRPGWHIECSAMCEQFLGEHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A N W+HNGF+ ++ KMSKS GNF T+ E+L + + Sbjct: 234 HHENEIAQSEGAH-DHPFVNYWMHNGFVRVDNEKMSKSLGNFFTVREIL-------KLYQ 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-----------VL 352 V+R +L HYR P++++ Q L + ++ L + I A Sbjct: 286 PEVVRFFILRAHYRSPLNYSDQHLKDTKLALDRLYIALKEVEPISVARVDWNYPYAQKFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-------------HILGIEVCKE 399 A+ +D NT AI L LA + K A L + Sbjct: 346 RAMDDDFNTPDAIALLFDLASDINKTGSREHAGLLKALGGLLGLLQQNPQEYLQNKAASS 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 LN + +E+L+QER+ K ++S AD IRKQL+ +G ILED + T W++ Sbjct: 406 ELNSSAHD-VEQLIQERINARKEGRYSDADTIRKQLQEQGIILEDS------SQGTTWRR 458 >gi|160947200|ref|ZP_02094367.1| hypothetical protein PEPMIC_01133 [Parvimonas micra ATCC 33270] gi|158446334|gb|EDP23329.1| hypothetical protein PEPMIC_01133 [Parvimonas micra ATCC 33270] Length = 461 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 180/479 (37%), Positives = 258/479 (53%), Gaps = 47/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL RK +F+ I +YVCGPTVY++ HIGN+RPMIV+D L R L Y + Sbjct: 1 MKIYNTLTRKKEDFKPIQAGKALIYVCGPTVYNYIHIGNSRPMIVYDTLRRYLLYIGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC-LAPTHQP 123 V +V N TDIDDKII RA++E N + IT K +++D+ L + T P Sbjct: 60 -VKFVSNFTDIDDKIINRAKEE------NVPFTDITKKYIDAYLEDSYGLNLFESHTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATECINEMIEFVKVLEEKGIAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDISD 172 Query: 184 HKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK+ EP WESPWG GRPGWH+ECS M+ YLG DIH GG DL F Sbjct: 173 EKKNPLDFALWKKRKDETEPAWESPWGMGRPGWHLECSVMAKKYLGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C + + AN W+HNG +N++ KMSKS GNF TI ++ + + Sbjct: 233 PHHENEIAQSECCNG-KVFANYWMHNGMINIDNVKMSKSKGNFFTIKDI-------QKEY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----------------- 345 VIRL +L THYR P++F+ + + + + L + Sbjct: 285 DLEVIRLWILSTHYRNPLNFSREVMEQTKNGLDRMYNGKEHLERLLEICEEKEDGDISKL 344 Query: 346 -IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGIE 395 + L + +DLNT AI +++L R + + + + + A +LG+ Sbjct: 345 VELKKEFLDCMDDDLNTADAISKVYELIRYTNTFGENTDLKVVKGAVKLLSDFASVLGLL 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 +E + N+ +EKL++ER K K F AD IR L+ L+D +N +R+ Sbjct: 405 YKEE--DDNLDEKVEKLIKEREEARKNKDFKRADEIRDALKEMNIELKDTRNGVIWKRV 461 >gi|227545183|ref|ZP_03975232.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri CF48-3A] gi|300909140|ref|ZP_07126601.1| cysteine--tRNA ligase [Lactobacillus reuteri SD2112] gi|227184829|gb|EEI64900.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri CF48-3A] gi|300893005|gb|EFK86364.1| cysteine--tRNA ligase [Lactobacillus reuteri SD2112] Length = 478 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 166/492 (33%), Positives = 257/492 (52%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 10 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYK- 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K F++DT + T PR Sbjct: 69 -VNYVSNFTDVDDKMIKAAAEQ------GITVPQLAEKYINAFMEDTAAINIEPATLHPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I ++I +Q ++ G+AY + ++ + + +YG S + +D+ ++G Sbjct: 122 ATENITEIIKFVQGLVEKGYAYPKDGDVYYRSRKFNHYGQLSGQSLDDLEVGASEHVSAD 181 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 182 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 241 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 242 EFPHHENEIAQSEAETGQK-FVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 295 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQIAFDNLTYREQDADEGDVQE 353 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 ++A+ +D+N + I +++L + + + Sbjct: 354 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSLGAIQAIKKELVEL 413 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G++ + N+ I++L++ER I K K F+ +D IR L+ +G ILED Sbjct: 414 MSIFGVK-LEASDNQINDEKIKQLIEERNIARKNKDFARSDEIRDNLKKQGIILEDT--- 469 Query: 449 DNGQRMTRWKQK 460 + TR+K++ Sbjct: 470 ---PQGTRYKKE 478 >gi|294624692|ref|ZP_06703360.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601000|gb|EFF45069.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 476 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 197/496 (39%), Positives = 268/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALETESGGDVAISKT 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIE 395 V SAL +DLNT A+ + +A ++ + + A A +LG Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSELMHSGQASARMAQLQAARAKLLGAG 405 Query: 396 VCKEHLNKN------------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 V L ++ I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 VALGLLQQDPAAWFSRGTDVGDDARITALVEERSAAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|259047744|ref|ZP_05738145.1| cysteine--tRNA ligase [Granulicatella adiacens ATCC 49175] gi|259035935|gb|EEW37190.1| cysteine--tRNA ligase [Granulicatella adiacens ATCC 49175] Length = 469 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 167/490 (34%), Positives = 245/490 (50%), Gaps = 55/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+IYNTL R+ F+ I+ +RMYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IQIYNTLTRQKEAFKPIEEGKVRMYVCGPTVYNYIHIGNARSTVSFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII A + ++ K + F +DT L T P Sbjct: 61 -VNFVSNFTDVDDKIIRVANE------TGMTAEEVSKKYIEAFFEDTNALNVKKATLNPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 N + +I + ++I G AYE+ ++ F T YG S ++I++ +MG Sbjct: 114 VMNTMDDIIAFVADLIDKGMAYESEGDVYFITEKFEGYGKLSDQRIEDLQMGASNRTASE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K+NP DF LWK + P E W SPWG+GRPGWHIECS M++ +LG DIHGGG DL Sbjct: 174 DDAKKRNPLDFALWKNAKPNEISWNSPWGKGRPGWHIECSVMATKHLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS +K AN W+HN F+ + KMSKS GNF+ +++L+ + Sbjct: 234 AFPHHENEIAQSESKTG-KKFANYWMHNAFVTMGEEKMSKSLGNFVLVHDLI-------Q 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------------- 344 V+R + HYR P+ F+ L EA + L K T + Sbjct: 286 QLDPQVLRFFLASAHYRRPLKFSEAALQEAAVNLEKVQTTFKNARYRLETAVDALPEDAE 345 Query: 345 -----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHI 391 I+ + +D N + + L++ +E + L + +A + Sbjct: 346 RLAKFAAIEADFQKEMDDDFNAANGMTVLYQWLKEWNVYLEQEVVSKAVLEALLEKAAVL 405 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 GI E + I+ L++ERL K K F+ +D IR L+ +G +LED Sbjct: 406 FGIFGIVEKQEALLDDDIQALIEERLEARKAKNFARSDEIRDLLKEQGIVLEDT------ 459 Query: 452 QRMTRWKQKP 461 + TRW+++ Sbjct: 460 PQGTRWRREA 469 >gi|116514575|ref|YP_813481.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274693|sp|Q048S9|SYC_LACDB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116093890|gb|ABJ59043.1| cysteinyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 474 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 171/496 (34%), Positives = 255/496 (51%), Gaps = 62/496 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKLFNTLTRQKEEFKPLVPGQVSMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E + + + Q F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEAGAE------GTTVPELAERYIQAFLEDTRALNIEEATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT+ IP +I IQ +I G+AYEA+ ++ + +YG S + ID+ + G Sbjct: 113 ATHEIPAIIDFIQTLIDKGYAYEADGDVYYRAKKFADYGHLSDQNIDQLEEGASQHVNDE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQGRKEDPIDFALWKGQKAADEIAWDSPWGKGRPGWHIECSVMSTKYLGDTLDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T+ ++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDEEKMSKSLHNFVTVYDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIID 348 ++ V+R M YR I+++ + L +A +L ++ T ++G+ D Sbjct: 287 --KNVDPQVLRFFMASVQYRSQINYSEENLEQAANILGRFKNTLEGINYRLADATEGLPD 344 Query: 349 PA-----------VLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFN 386 P +A+ +D N +A+ A+++ N + Sbjct: 345 PDLAKLVTETTAKFEAAMDDDFNVQNALTAIYEALPAVNSNANAEKADKESLRLFAKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++V K + IE+LV +R K K ++ +D +R QL+ G +L+D Sbjct: 405 AWLSVFGLDVDKLLAKEAGDDDAVIEELVAQRTEARKNKDWAKSDELRDQLKEMGVVLKD 464 Query: 445 YKNPDNGQRMTRWKQK 460 + TRW ++ Sbjct: 465 T------PQGTRWSRE 474 >gi|148543540|ref|YP_001270910.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|184152946|ref|YP_001841287.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri JCM 1112] gi|227363504|ref|ZP_03847624.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri MM2-3] gi|189082068|sp|A5VI99|SYC_LACRD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558714|sp|B2G5S5|SYC_LACRJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148530574|gb|ABQ82573.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|183224290|dbj|BAG24807.1| cysteinyl-tRNA synthase [Lactobacillus reuteri JCM 1112] gi|227071441|gb|EEI09744.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri MM2-3] Length = 470 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 167/492 (33%), Positives = 256/492 (52%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAAEQ------GITVPQLAEKYINAFMEDTAAINIEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I ++I +Q +I G+AY + ++ + +YG S + +D+ ++G Sbjct: 114 ATENITEIIKFVQGLIEKGYAYPKDGDVYYRARKFNHYGQLSGQSLDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 174 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 234 EFPHHENEIAQSEAETGQK-FVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 287 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQTAFDNLTYREQDADEGDVQE 345 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 ++A+ +D+N + I +++L + + + Sbjct: 346 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSLGAIQAIKKELVEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G++ + N+ I++L++ER I K K F+ +D IR L+ +G ILED Sbjct: 406 MSIFGVK-LEASDNQINDEKIKQLIEERNIARKNKDFARSDEIRDNLKKQGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TR+K++ Sbjct: 462 ---PQGTRYKKE 470 >gi|325926478|ref|ZP_08187798.1| cysteinyl-tRNA synthetase [Xanthomonas perforans 91-118] gi|325543127|gb|EGD14570.1| cysteinyl-tRNA synthetase [Xanthomonas perforans 91-118] Length = 476 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 197/496 (39%), Positives = 266/496 (53%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVAPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATTHIPQIVAMIEQLIATGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWPSPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALEAESGSDPAVSMT 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNH-DLLPIFNASAHI-------------- 391 V SAL +DLNT A+ + +A ++ DL+ ASA + Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSDLMQSGQASARMIELHAARAKLLGAG 405 Query: 392 --LGIEVCKEHL------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 LG+ + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 MALGLLQQDPAAWFSRGTDAGDDARITALVEERSAAKKAKDFARADAIRKQLAEEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|110834996|ref|YP_693855.1| cysteinyl-tRNA synthetase [Alcanivorax borkumensis SK2] gi|123050340|sp|Q0VML5|SYC_ALCBS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|110648107|emb|CAL17583.1| Cysteinyl-tRNA synthetase [Alcanivorax borkumensis SK2] Length = 460 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 212/482 (43%), Positives = 278/482 (57%), Gaps = 47/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ NTL K +F +DP+ I +YVCGPTVY+F HIGNARP++VFDVLYRLL+ Y Sbjct: 1 MTLRLQNTLTGKKDDFIPLDPNRITLYVCGPTVYNFVHIGNARPVVVFDVLYRLLQRLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y RNITDIDDKII+ A +AIS +T + TQ F D L P+ Sbjct: 60 -PNVVYARNITDIDDKIIKAAADN------GEAISTLTERFTQAFADDMASLNAKTPSII 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT+HIP+MI +I ++ GHAYEA+ +++F S+P+YG S RK+++ G RV Sbjct: 113 PKATDHIPEMIQMIAILVEKGHAYEADGQVLFAVESMPDYGKLSGRKLEDMLAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DFILWK ST +PGW+SPWGRGRPGWHIECSAM +LG V DIHGGG DLIF Sbjct: 173 DYKRHPGDFILWKPSTDEQPGWDSPWGRGRPGWHIECSAMIHKHLGDVIDIHGGGQDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ CCA + W+HNG++N++G KMSKS GNF + +LL + Sbjct: 233 PHHENEIAQGCCAHGTD-YVRYWLHNGYINIDGEKMSKSLGNFRLVRDLLT-------QY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-----------DPAV 351 +R A+L +HYR P++F+ L AE L +G + V Sbjct: 285 HGETLRFALLSSHYRSPLNFSADVLDNAEKGLDTLYYALLGRGETVAPEAGYQLPDNHPV 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEHLNK 403 L AL +DLNT A+ ALH +A E K L +L +E NK Sbjct: 345 LDALKDDLNTSEAVSALHAIAGELNKAELDDKPKLKAELLAAADLLGLLTVEPTAWFQNK 404 Query: 404 NISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 N+S AI+ LV+ER K K F+ AD IR+QL G LED + TRW Sbjct: 405 NVSEDGLSNDAIDALVEERTQAKKDKNFARADEIRQQLTKAGIQLEDTR------EGTRW 458 Query: 458 KQ 459 + Sbjct: 459 SR 460 >gi|268318912|ref|YP_003292568.1| hypothetical protein FI9785_418 [Lactobacillus johnsonii FI9785] gi|262397287|emb|CAX66301.1| cysS [Lactobacillus johnsonii FI9785] Length = 470 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 170/493 (34%), Positives = 251/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 1 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH + + + + F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARKEHT------TVEKLAERYIKAFMEDTEALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 113 ATHEIKEIIDFVQDLIDKGFAYEVDGDVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 172 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 287 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETILKRYQNTLRNLDARLNDENETLED 344 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFN 386 + A+ +D N +A+ ++ LA + + Sbjct: 345 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLATTLNNHLQKDQVDKPALKRAKKLLI 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ +E IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 405 AWLEIFGVSFKEEQAGN--DDEIEKLIAQRDEARKNKDWAESDRLRDELQAKGIVIEDT- 461 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 462 -----PQGTRWHR 469 >gi|221632709|ref|YP_002521930.1| cysteinyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] gi|221155785|gb|ACM04912.1| cysteinyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] Length = 465 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 175/484 (36%), Positives = 243/484 (50%), Gaps = 49/484 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ NTL R+ +F+ ++P ++RMYVCGPTVY AHIG+A IVFD++ R L Y Sbjct: 1 MTLRVTNTLTREKEQFETLEPGHVRMYVCGPTVYSDAHIGHAMSAIVFDMIRRYLEYSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+ N TDIDDKII+RA + + + ++ +T L T Sbjct: 61 --RVTFAMNFTDIDDKIIQRAAT------LGLPPHELAEQLIDAWLDETAALNIKPATIY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT IP +I +++ +++ GHAY + ++ F S P YG S R ++E G RV Sbjct: 113 PRATQEIPTIIEMVKGLLVKGHAYTIDGDVYFRVLSFPEYGKLSHRTLEEMLAGARVEID 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP W+SPWG GRPGWHIECSAM +LG+ DIHGGG DLIF Sbjct: 173 PRKEHPMDFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMIYRHLGEQIDIHGGGADLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNG L L G KMSKS GN ITI ELL G Sbjct: 233 PHHENEIAQSEAFTGKKPFVRYWLHNGLLQLGGEKMSKSIGNLITIRELLARNGAGP--- 289 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------QTSTSKG 345 RL +L +HYR P+ FT + A + + +T Sbjct: 290 ----FRLLVLSSHYRSPLTFTEEAFEAATRGFDRLRLAVQGVEPAELPNRPEHELATLAD 345 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA----------SAHILGIE 395 A A+ +D +T A+ L +LAR + A A +LG Sbjct: 346 ATRLAFRQAMDDDFDTPVALARLFELARAINRARASGERLEAIRYAQFTLLELATVLGFR 405 Query: 396 VCKEHLN-KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 ++ ++ I+ L+ R L +++ ADYIR +L G ++ED Sbjct: 406 FDEQSTGRQSAEPFIDLLLDVRARLRAQRQWELADYIRGRLNELGVLVEDT------PGG 459 Query: 455 TRWK 458 T W+ Sbjct: 460 TTWR 463 >gi|223933939|ref|ZP_03625899.1| cysteinyl-tRNA synthetase [Streptococcus suis 89/1591] gi|223897386|gb|EEF63787.1| cysteinyl-tRNA synthetase [Streptococcus suis 89/1591] Length = 447 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 168/468 (35%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+ N TD+DDKII+ A + ++ K F +D +L T PR Sbjct: 61 -VTYISNFTDVDDKIIKAANE------AGMTTKELSDKFIAAFREDVAKLGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G+AYEA+ ++ F NY + + + + + G E Sbjct: 114 VIDYMDEIIDFVQVLIDKGYAYEASGDVYFRVEKAENYARLANKTLSDLEAGASGRVEGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GQLKEHPFDFALWKTAKPGEVSWESPWGAGRPGWHIECSVMATEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS C + AN W+HN LN+ KMSKS GNF+T +++LE Sbjct: 234 FPHHTNEIAQSECKTG-QTFANYWMHNAMLNINDEKMSKSLGNFLTAHDMLE-------Q 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIID--------PAV 351 V+R + HYR P+++T + +++AEI L T T + +D A Sbjct: 286 IDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVDKSALELHLAAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I A+ A+ + + F + GI +E L+ Sbjct: 346 EAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLEVFGIVFEEEVLDS----E 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IEALIAERQAARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|315612689|ref|ZP_07887601.1| cysteine--tRNA ligase [Streptococcus sanguinis ATCC 49296] gi|315315276|gb|EFU63316.1| cysteine--tRNA ligase [Streptococcus sanguinis ATCC 49296] Length = 447 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVADLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPDEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDTQELQAFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N+ + I + ++A+ + + + GI +E L+ + Sbjct: 346 VAAMDEDFNSANGITVVFEMAKWINSGNYDASVKQALADMLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|159905981|ref|YP_001549643.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C6] gi|229558715|sp|A9AAN8|SYC_METM6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|159887474|gb|ABX02411.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C6] Length = 476 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 166/480 (34%), Positives = 238/480 (49%), Gaps = 54/480 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ ++ ++MYVCGPTVYD H+G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRKEEEFKPLNEKEVKMYVCGPTVYDHTHLGHGRTYVSFDIIRRYLEHIGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA + + ++ + F+ D T L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRANENGKN------PKELSEQFITVFLNDMTTLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I I+ +I G AYE N + F+ NYG S +++ G R+ Sbjct: 114 VTEHIPEIIAFIEKLIEKGFAYETENGVYFEVKKFENYGKLSNINLEDLFSGVRIETSEE 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + P EP W+SP+ GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNPEDFALWKTAKPGEPKWKSPFVEGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNF+TI + + + Sbjct: 234 HENEIAQSVAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFVTIEGI-------SKEYDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 ++R + HYR PID+T + +T + L K + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESITHVKNNLEKIYNVIENIRISLEKSEKSRVWGENEVLL 345 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI------------FNAS 388 A+ +D NTV A++++ +++ K L+ F Sbjct: 346 YDILKNSKRNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVKTPSEGLLLKAFDFFKIV 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ K + I+ L++ R L K + +D IR L++ G+ +ED Sbjct: 406 GEIFGLFENYFKTSSESDDEEFIKFLIELRSDLRLQKNYEMSDKIRDGLKNLGYQIEDNP 465 >gi|254555716|ref|YP_003062133.1| cysteine-tRNA ligase [Lactobacillus plantarum JDM1] gi|254044643|gb|ACT61436.1| cysteine-tRNA ligase [Lactobacillus plantarum JDM1] Length = 470 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 179/479 (37%), Positives = 258/479 (53%), Gaps = 51/479 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYCGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T PR Sbjct: 60 HVDYVSNFTDVDDKLIKRAAEDHTTVP------AVADRFIKAFMEDTTAVNIEPATVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 A+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G Sbjct: 114 ASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHTADE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E WESPWG GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETDRKEDPIDFALWKAAKPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 234 EFPHHENEIAQSEAKTG-KTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIIDPA 350 V+R M T YR PI +T L EA L K + D A Sbjct: 290 ----DPQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNGTDTA 345 Query: 351 VLS-----------ALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHI 391 V A+ +D N + + A+++LA+ + + L+ + A + Sbjct: 346 VAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAKATVQKETLIALQKALVQL 405 Query: 392 LGI-EVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 G+ V E N + AI+ L+ ER K K F+ AD IR L+++G ILED Sbjct: 406 TGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKAQGIILEDTPQG 464 >gi|134296083|ref|YP_001119818.1| cysteinyl-tRNA synthetase [Burkholderia vietnamiensis G4] gi|166200137|sp|A4JFD0|SYC_BURVG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|134139240|gb|ABO54983.1| cysteinyl-tRNA synthetase [Burkholderia vietnamiensis G4] Length = 465 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 176/484 (36%), Positives = 249/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKII RA + ++I +T + D L P + Sbjct: 62 --RVTYVRNITDVDDKIIRRA------VENGESIKSLTDRFIGAMHDDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEQLEANGYAYQASDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKAEDPEGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALALDWNEPYA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D+NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQG 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 H + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 AGSAHAGALAADEIEARIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|315923786|ref|ZP_07920016.1| cysteine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622906|gb|EFV02857.1| cysteine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 465 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 176/482 (36%), Positives = 261/482 (54%), Gaps = 51/482 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNT+ ++ EF I+P +RMY CGPTVY++ HIGNARP IVFDVL R L Y + Sbjct: 1 MKLYNTMTQRKEEFVPIEPGKVRMYSCGPTVYNYFHIGNARPFIVFDVLRRFLEYIGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII R+ +E I K ++ KD L T PR Sbjct: 60 -VTFVQNFTDVDDKIINRSHEE------GCTAKEIADKYIAEYFKDADALGIRRATVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 ++ +P++I +++ + G AY + + P+YG S + + + + G R+ Sbjct: 113 VSDTMPEIIAMVKALEDRGLAYNVGGNVYYAVDRFPDYGKLSGQNVADLEAGARIDVNDE 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K +P DF LWK++ P EP W+SPWGRGRPGWHIECSAMS +LG+ DIHGGG DLIFPH Sbjct: 173 KHSPLDFALWKKAKPGEPYWDSPWGRGRPGWHIECSAMSRKFLGETIDIHGGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + E A W+HNG++N+ KMSKS GNF T+ ++ + Sbjct: 233 HENEIAQSEGSCGCE-FARYWVHNGYININDEKMSKSKGNFFTVRDI-------AGKYDL 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------TSTSKGIIDPA--- 350 V+R+ MLM HYR P++F+ + L A+ L ++ K D A Sbjct: 285 EVVRMFMLMAHYRSPVNFSDELLASAQNALERFYNAKNQMIYLADHAEDRKPSPDEAAWI 344 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHD----------LLPIFNASAHI 391 ++A+ +DLNT AI A+ +L R + L +F A + Sbjct: 345 QSLTQYKNGFIAAMNDDLNTADAIAAMFELVRAANTALSESSPKSAVTAALKLFRELAGV 404 Query: 392 LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 +G+ ++ + ++ +E L+ ER + + F+ AD IR +L ++G +LED + Sbjct: 405 IGL--AEKEPDSHLESEVEALIAERQAARRARDFARADAIRDELAARGIVLEDTREGVKW 462 Query: 452 QR 453 + Sbjct: 463 HK 464 >gi|241662706|ref|YP_002981066.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12D] gi|240864733|gb|ACS62394.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12D] Length = 463 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 263/482 (54%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + +S +T + +D L P ++ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETMSALTGRFIAAMHEDADALGVQRPDYE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLGMIGKLQTNGLAYQATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG+ FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKAEEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ + KMSKS GNF TI ++L Sbjct: 234 DLQFPHHENEIAQSEGATG-KTFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIID----- 348 + + A V+R +L +HYR ++++ L +A L++ + + D Sbjct: 287 -KVYDAEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAAGAKPDWNESH 345 Query: 349 -PAVLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCKEHL---- 401 L A+ +D NT A+ L +LA E K +L A A +LG+ H Sbjct: 346 GKRFLEAMNDDFNTPVAVSVLFELASEVNKTRSPELASQLAALAGVLGLLGRDPHAFLQG 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +E ++ER + F+ AD IR L + G +LED +T W Sbjct: 406 GVSPDGLDAAEVEARIEERRAAKAARDFARADAIRADLLAAGIVLEDKPGG-----VTEW 460 Query: 458 KQ 459 ++ Sbjct: 461 RR 462 >gi|313639766|gb|EFS04515.1| cysteinyl-tRNA synthetase [Listeria seeligeri FSL S4-171] Length = 471 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 171/485 (35%), Positives = 250/485 (51%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIKAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S + + E + G RV Sbjct: 115 VTENMDEIIQLITTLIEKGYAYESAGDVYFRTKKFEDYGKLSGQALSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DLIFPH Sbjct: 175 KQDELDFTLWKAAKPDEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 235 HEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDNDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------PQT 340 VIR ML HYR+PI L +A+ L + + Sbjct: 287 NVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHQDEW 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASA 389 + A + +D NT +AI H+LA+ + + L + A Sbjct: 347 LEQLTELKHAFEEDMDDDFNTANAITTFHELAKRANIYLSKEVVSVNVLREFLSMMRLFA 406 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG+++ +E L++ERL + F+ AD IR L+ K ILED Sbjct: 407 EVLGLKLEYTQTESLADSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQGT 466 Query: 450 NGQRM 454 +R Sbjct: 467 RFRRG 471 >gi|304405640|ref|ZP_07387299.1| cysteinyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] gi|304345679|gb|EFM11514.1| cysteinyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] Length = 477 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 172/495 (34%), Positives = 245/495 (49%), Gaps = 63/495 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNT+ R F+ P ++MYVCGPTVYD+ HIGNARP+I FDV+ R L E V Sbjct: 5 IYNTMTRAQEAFKPQQPGQVKMYVCGPTVYDYIHIGNARPVIFFDVVRRYLEVTGYE--V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 Y+ N TD+DDK+I +A Q + + + F +D L T PR T Sbjct: 63 NYIVNFTDVDDKLIRKAEQ------LGTTVPEVADTFIAAFNEDIEALGVHKATRNPRVT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +HIP ++ IQ ++ G AYE+ ++ F T+ YG S + +E ++G R+ K+ Sbjct: 117 DHIPLIVSFIQGLVDKGIAYESAGDVYFRTNQFEAYGKLSHQNTEELQLGIRIEIDERKQ 176 Query: 187 NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE 246 + DF+LWK + P E W SPWG GRPGWHIECSAM+ YLG DIHGGG DL FPHHE Sbjct: 177 HAQDFVLWKSAKPGEIHWSSPWGNGRPGWHIECSAMAREYLGDTLDIHGGGHDLQFPHHE 236 Query: 247 NEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 E+AQS + AN W+HNG++++ KMSKS GN IT+ ELL+ K Sbjct: 237 CEVAQSESLTG-KPLANYWMHNGYVHINNEKMSKSLGNGITVRELLKRTK-------PQA 288 Query: 307 IRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------------TSTS 343 IR +L THYR P++F+ + +AE + + ++ Sbjct: 289 IRYFVLATHYRSPLNFSDDTIAQAENSVERIVNCAGNLLHRLSVLGEKPLEPQQAVAASG 348 Query: 344 KGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIF 385 +D + + +D NT AI AL L E+ LL + Sbjct: 349 NDALDARLAAIAGQFAAKMNDDFNTPDAITALFDLVSEANGAMQRQDASAAELQALLALL 408 Query: 386 NASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 LG+ + + + IEKL+ ER + K ++ AD IR L + +LED Sbjct: 409 EQFDRTLGLLPRADEAGELLDEQIEKLIVERTEARQAKNWARADEIRDLLAADNIVLEDT 468 Query: 446 KNPDNGQRMTRWKQK 460 + +W++K Sbjct: 469 ------PQGIKWRRK 477 >gi|195978850|ref|YP_002124094.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229558791|sp|B4U570|SYC_STREM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|195975555|gb|ACG63081.1| cysteinyl-tRNA synthetase CysS [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 448 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 242/471 (51%), Gaps = 42/471 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 3 IKIYDTMTRSLREFVPITDKVVNMYVCGPTVYNYIHIGNARSAVAFDTVRRYFEYAGY-- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ + + + F++DT L T PR Sbjct: 61 TVNYISNFTDVDDKIIKAAKE------AGLSPKQLADQFIAAFMEDTKALGVKPATKNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I I +I G+AYE+ ++ F + NY + + I + + G E Sbjct: 115 VMDYMDEIIAFIAALIKKGYAYESAGDVYFRVAKASNYARLANKTIADLEAGASGRTDTE 174 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W SPW GRPGWHIECS M++ LG DIHGGG DL Sbjct: 175 TALKENPLDFALWKSAKPGEVSWTSPWSAGRPGWHIECSVMATELLGDTIDIHGGGADLE 234 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 235 FPHHTNEIAQSEAKT-SKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTV------ 287 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 +R + HYR+PI+FT + + +AE+ L T S+ A Sbjct: 288 -DGQTLRFFLATQHYRKPINFTEKAIHDAEVNLKYLKNTLQQPTVATADSSQLAAFVTAF 346 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D NT + I L +A+ + + F + GI E L+ Sbjct: 347 KAAMNDDFNTANGITVLFDMAKWINSGAYSEAVKSAFEEMLAVFGIVFEAESLD----TE 402 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+ ER + F+ AD IR QL ++G L D K+ RW + Sbjct: 403 IEQLIAERQEARANRDFAKADAIRDQLAAQGIKLLDTKD------GVRWIR 447 >gi|169834403|ref|YP_001694075.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] gi|168996905|gb|ACA37517.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] Length = 457 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 12 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 70 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 71 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 124 VVEFMDDIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 184 TARKENPVDFALWKSAKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 243 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 244 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 295 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 296 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 355 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 356 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 411 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 412 IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTKD---GVRWTR 456 >gi|29374703|ref|NP_813855.1| cysteinyl-tRNA synthetase [Enterococcus faecalis V583] gi|61216301|sp|Q839V5|SYC_ENTFA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|29342161|gb|AAO79927.1| cysteinyl-tRNA synthetase [Enterococcus faecalis V583] Length = 470 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 168/492 (34%), Positives = 249/492 (50%), Gaps = 62/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y E Sbjct: 2 IKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A++ + + + + F +DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---E 181 +H+P ++ I+ +I G AYE ++ + T PNYG S + IDE ++G E Sbjct: 114 VMDHMPDILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +L + DIHGGG DL Sbjct: 174 QQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLEETIDIHGGGQDLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 234 FPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 286 QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PIFNA 387 ++ ++ + +D N + I +++LA+ + + +F+ Sbjct: 346 HYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSG 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 406 WLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 460 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 461 ----PQGTRWRR 468 >gi|315171290|gb|EFU15307.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX1342] Length = 478 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 170/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAKRFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|315151334|gb|EFT95350.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0012] Length = 478 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 169/495 (34%), Positives = 250/495 (50%), Gaps = 62/495 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ H+GNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHLGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILTFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------PI 384 ++ ++ + +D N + I +++LA+ + + + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 F+ I G+ E L + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFGLFFKNEEL---VDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLED 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW++ Sbjct: 468 T------PQGTRWRR 476 >gi|238027920|ref|YP_002912151.1| cysteinyl-tRNA synthetase [Burkholderia glumae BGR1] gi|237877114|gb|ACR29447.1| Cysteinyl-tRNA synthetase [Burkholderia glumae BGR1] Length = 464 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 184/484 (38%), Positives = 259/484 (53%), Gaps = 49/484 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR M+VFDV+ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRHPGEVRMYVCGITVYDYCHVGHARMMVVFDVVQRWLRALGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +TS+ +D L P H+ Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIGSLTSRFIAAMHEDLDALGVARPEHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ +PQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATDFVPQMLGMIETLEANGYAYQASDGDVNYAVRKFANYGRLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + P EP W+S +GRGRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKSAKPGEPADTSWDSKYGRGRPGWHIECSAMGCTLLGHHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLAR---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + A V+R ++ THYR P++++ L +A L++ T+ D A Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSEVHLDDARASLTRLY-TALKDVTPDAAPLDRDEPH 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILG---------IEV 396 +A+ +D NT A+ L +LA E + + L +LG ++ Sbjct: 345 ARRFAAAMNDDFNTALAVSVLFELAGEVNRTREPALARQLKQLGGLLGLLGREPRAYLQQ 404 Query: 397 CKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + AIE + R+ + K ++ AD IR L G LED +T Sbjct: 405 ASGAASGALEAGAIEAQIAARVAAKQAKNYAEADRIRAALLEAGVALEDKPGG-----LT 459 Query: 456 RWKQ 459 W++ Sbjct: 460 EWRR 463 >gi|308179697|ref|YP_003923825.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045188|gb|ADN97731.1| cysteine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 470 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 178/479 (37%), Positives = 258/479 (53%), Gaps = 51/479 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYCGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T PR Sbjct: 60 HVDYVSNFTDVDDKLIKRAAEDHTTVP------AVADRFIKAFMEDTTAVNIEPATVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 A+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G Sbjct: 114 ASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHTADE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETDRKEDPIDFALWKAAKPGEISWKSPWGAGRPGWHIECSVMSTKYLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 234 EFPHHENEIAQSEAKTG-KTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIIDPA 350 V+R M T YR PI +T L EA L K + D A Sbjct: 290 ----DPQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNGTDTA 345 Query: 351 VLS-----------ALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHI 391 V A+ +D N + + A+++LA+ + + L+ + A + Sbjct: 346 VAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAQATVQKETLIALQKALVQL 405 Query: 392 LGI-EVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 G+ V E N + AI+ L+ ER K K F+ AD IR L+++G ILED Sbjct: 406 TGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKAQGIILEDTPQG 464 >gi|254252008|ref|ZP_04945326.1| Cysteinyl-tRNA synthetase [Burkholderia dolosa AUO158] gi|124894617|gb|EAY68497.1| Cysteinyl-tRNA synthetase [Burkholderia dolosa AUO158] Length = 465 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 179/484 (36%), Positives = 250/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRRSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEQLESNGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P WES +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWESKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----IID------ 348 + A V+R ++ THYR P++++ L +A L++ +D Sbjct: 289 ---YDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALALDWSEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT AI L +LA E + D L A L Sbjct: 346 QRFAAAMNDDFNTPVAIATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 SGAARDGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|126658705|ref|ZP_01729850.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] gi|126619967|gb|EAZ90691.1| cysteinyl-tRNA synthetase [Cyanothece sp. CCY0110] Length = 482 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 249/492 (50%), Gaps = 58/492 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNT R++ F + P + MY CG TVYD+ H+G+AR I++D++ R L++ Sbjct: 1 MTLKIYNTQTRRLEPFITLLPGRVTMYCCGVTVYDYCHLGHARSYIIWDMVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYV+N TDIDDKI+ RA+QE ++ I+ + + + D L + Sbjct: 61 E--VTYVQNFTDIDDKILRRAQQE------GVSMVDISERFIEAYFTDIRPLNVMDADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PR T++I + LIQ ++ +AY + ++ F + YG S R + G Sbjct: 113 PRVTDNISGIQQLIQVLLEKNYAYAVDGDVYFHVEAFGEYGKLSGRSQSMMQAGASGRVA 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P HKK+P+DF LWK + P EP W SPWG GRPGWHIECSAM LG+ DIHGG Sbjct: 173 MSDPANSHKKHPSDFALWKSAKPEEPAWNSPWGEGRPGWHIECSAMVRGLLGETIDIHGG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL+FPHHENEIAQS A+ + A W+HNG + + G KMSKS GNF TI ELL Sbjct: 233 GGDLVFPHHENEIAQSEAANG-KPLAKYWVHNGMVTVNGEKMSKSLGNFTTIRELLN--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQT 340 R VIRL +L HYR+P+DFT + ++ A W + Sbjct: 289 ---RPLDPMVIRLFVLQAHYRKPLDFTEEAISSATNGWQTLQQGLRFGEKYGNRLGWQKN 345 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------P 383 + +A+ +D N+ + L +LA+ + +LL Sbjct: 346 QELDSAVIEQFNAAMDDDFNSPGGLAVLFELAKNLRREGNLLTHEGKTPTDSDNLQRQWQ 405 Query: 384 IFNASAHILGIEVCK----EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A ILG+E E I +L+Q+R K+K ++ +D IR+QL+ KG Sbjct: 406 TLVHLAGILGLEAKPKANLEDTQNFDEAKITRLIQQRNAARKVKDYAQSDRIREQLQQKG 465 Query: 440 FILEDYKNPDNG 451 L D+ N + Sbjct: 466 ITLIDHPNGETS 477 >gi|67922209|ref|ZP_00515723.1| Cysteinyl-tRNA synthetase, class Ia [Crocosphaera watsonii WH 8501] gi|67855912|gb|EAM51157.1| Cysteinyl-tRNA synthetase, class Ia [Crocosphaera watsonii WH 8501] Length = 482 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 172/492 (34%), Positives = 253/492 (51%), Gaps = 58/492 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNT R++ F + P + MY CG TVYD+ H+G+AR I++D++ R L++ Sbjct: 1 MTLKIYNTQTRRLEPFVTLLPGRVTMYCCGVTVYDYCHLGHARSYIIWDMVRRYLKWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYV+N TDIDDKI+ RA+++ +++ I+ + + + +D L + Sbjct: 61 E--VTYVQNFTDIDDKILRRAQEQ------GVSMADISERFIEAYFEDIRPLNVMDADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PR T++I + LI+ ++ +AY A+ ++ F + YG S R + G Sbjct: 113 PRVTDNISGIQQLIEVLLEKNYAYAADGDVYFHVEAFEQYGKLSGRSQSMMQAGASGRVA 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P HKK+P+DF LWK + P EP W+SPWG GRPGWHIECSAM LG+ DIHGG Sbjct: 173 VSDPTNSHKKHPSDFALWKSAKPEEPAWDSPWGEGRPGWHIECSAMVRGLLGETIDIHGG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL+FPHHENEIAQS A+ + A W+HNG + + G KMSKS GNF TI ELL Sbjct: 233 GGDLVFPHHENEIAQSEAANG-KPLAKYWVHNGMVTVNGEKMSKSLGNFTTIRELLN--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQT 340 R VIRL +L HYR+P+DFT + ++ A W + Sbjct: 289 ---RPLEPMVIRLFVLQAHYRKPLDFTEEAISSATNGWQTLQQGLLFGEKYGNRLGWEKN 345 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------P 383 + + + +D N+ + L +LA+ + +LL Sbjct: 346 QELDSAVIEQFKATVDDDFNSPGGLAVLFELAKNLRREGNLLTHEGKITTDGEDLQRQWQ 405 Query: 384 IFNASAHILGIEVCKEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A ILG+E E +++ I KL+Q+R K+K ++ +D IR+QL+ G Sbjct: 406 TLVHLAGILGLEAKSEVGSEDTNNFDQAEITKLIQQRNAARKVKDYAESDRIREQLQEMG 465 Query: 440 FILEDYKNPDNG 451 L D N + Sbjct: 466 ITLIDQPNGETS 477 >gi|50915009|ref|YP_060981.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] gi|61216145|sp|Q5X9W5|SYC_STRP6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|50904083|gb|AAT87798.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] Length = 447 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIVFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|222152459|ref|YP_002561634.1| cysteinyl-tRNA synthetase [Streptococcus uberis 0140J] gi|222113270|emb|CAR40797.1| cysteinyl-tRNA synthetase [Streptococcus uberis 0140J] Length = 446 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 167/467 (35%), Positives = 248/467 (53%), Gaps = 38/467 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R++ +F+ I+ + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRQLRDFKPINDNQVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + F++DT++L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAAAEN------GVTPKELADRFIAAFMEDTSKLGIKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I I ++ G AY+ ++ F + NY + + + + ++G E Sbjct: 114 VMDYMDEIIAFISVLMEKGFAYQVAGDVYFRVAKSENYARLANKTLADLEVGASGRTDSE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDLKENPLDFALWKSAKSGEISWESPWGPGRPGWHIECSVMATELLGHTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-HTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS------KWPQTSTSK---GIIDPAVL 352 V+R + YR+PI+FT + + +AE+ L + P TS A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTYRLPVAETSDLGYKTYIEAFK 345 Query: 353 SALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIAI 409 +A+ +D N + I + A+ H ++ F + GI +E L+ + I Sbjct: 346 AAMDDDFNAANGITVVFDFAKWINSGHYSAEIKTAFEEMLAVFGIVFEEEVLDAD----I 401 Query: 410 EKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 E L+ ER + F+ AD IR QL S+G L D K+ G R TR Sbjct: 402 EALIAERQEARAQRDFAKADQIRDQLASQGIKLLDTKD---GVRWTR 445 >gi|257875920|ref|ZP_05655573.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC20] gi|257810086|gb|EEV38906.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC20] Length = 470 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 169/494 (34%), Positives = 248/494 (50%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ FQ ++ ++MYVCGPTVY++ HIGN R + FD + R Y Sbjct: 2 IKIYNTLTREKEVFQPLEEKKVKMYVCGPTVYNYIHIGNGRSTVSFDTVRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ + + + F +DT L T PR Sbjct: 60 TVDYLMNFTDVDDKIIRAAKE------LGTTAPEVAERFINAFNEDTAALNVKPATMNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +HI +I I ++ G+AY N ++ + T +YG S + IDE ++G E Sbjct: 114 VMDHIEDIIAFIAALVEKGYAYPVNGDVYYRTRKFAHYGQLSDQSIDELEVGASQRTGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E WESPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKGDEIAWESPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + AN W+HNG++ + + KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KTFANYWMHNGYVTIGEDEEKMSKSLGNFVTVHEMV------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + V+R + T YR PI ++ L EA+ L K T Sbjct: 286 KKVDPQVLRFFLATTQYRRPIKYSETTLHEAQTNLQKLRTTYENAKFRLNSSHYQASDEE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNA 387 + + + + +D N + I +++LA+ + F+ Sbjct: 346 VNAAVLEEFEERFVKEMDDDFNAANGITVVYELAKWLNLASEDPETDLALLAAGLAKFSE 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L+ ER+ K K F+ +D IR +L+ +G ILED Sbjct: 406 WLTIFGIYFVSEEL---LDEEIEQLINERIAARKAKDFARSDQIRDELKEQGIILEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|322392299|ref|ZP_08065760.1| cysteine--tRNA ligase [Streptococcus peroris ATCC 700780] gi|321144834|gb|EFX40234.1| cysteine--tRNA ligase [Streptococcus peroris ATCC 700780] Length = 447 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 168/465 (36%), Positives = 242/465 (52%), Gaps = 33/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMDDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWNSPWGPGRPGWHIECSVMSTEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +AE L T + Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGTVDAGELQAFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 ++A+ D NT + I + ++A+ + + A +L + + + IE Sbjct: 346 VAAMDEDFNTANGITVVFEMAKWINSGNYDAAVKETLAAML-EVFGVVFVEEVLDEEIEA 404 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 405 LIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|325695526|gb|EGD37426.1| cysteine--tRNA ligase [Streptococcus sanguinis SK150] Length = 447 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPKEVADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IECLIEERQVARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|323339370|ref|ZP_08079655.1| cysteine--tRNA ligase [Lactobacillus ruminis ATCC 25644] gi|323093193|gb|EFZ35780.1| cysteine--tRNA ligase [Lactobacillus ruminis ATCC 25644] Length = 470 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I NTL K F+ ++ ++MYVCGPTVY++ HIGNAR + FD + R Y E Sbjct: 2 IQILNTLSGKKEIFKPLEEGKVKMYVCGPTVYNYIHIGNARSAVAFDTVRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ + + +T K F +D L T PR Sbjct: 61 -VDYVSNFTDVDDKIIKAG------HEMKMTVKEVTDKFIAAFYEDIDALNIKRATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP---- 180 + + +I IQ +I G+AY++ ++ + +YG S + +D+ + G Sbjct: 114 VMDTMDDIIKFIQVLIDKGYAYQSEGDVYYRARKFKDYGKLSGQSVDDLEQGASERVADF 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 ++ K++P DF LWK + P E WE+P+G GRPGWHIECS M++ YLGK DIH GG DL Sbjct: 174 DQGKKEDPLDFALWKAAKPGEIYWEAPFGNGRPGWHIECSVMATKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + N W+HNGF+ + E KMSKS GNF+T+++LL Sbjct: 234 EFPHHENEIAQSEAETGQK-FVNYWMHNGFVTIGEEDEKMSKSLGNFVTVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-------------- 344 + V+R M T YR PI ++ L EA+ L K + Sbjct: 287 -KKVDPQVVRFFMATTQYRHPIRYSQANLAEAKTNLQKLKTAVDNLRYRKNDAEKSDVEN 345 Query: 345 ------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNA 387 + + A+ +D NT + I ++++A+ + LL F+ Sbjct: 346 EIREKFSALKNRFIEAMDDDFNTQNGIAVIYEMAKLLNVYSEKATVSLETIEYLLDGFSK 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +A + GI+ +E + + IE L++ER+ K + F+ +D IR L+ KG ILED Sbjct: 406 AAEVFGIKFEEE--TELLDEKIEALIEERIAARKARNFAQSDEIRDMLKEKGVILEDT-- 461 Query: 448 PDNGQRMTRWKQ 459 + TRWK+ Sbjct: 462 ----PQGTRWKR 469 >gi|325681889|ref|ZP_08161407.1| cysteine--tRNA ligase [Lactobacillus reuteri MM4-1A] gi|324978533|gb|EGC15482.1| cysteine--tRNA ligase [Lactobacillus reuteri MM4-1A] Length = 478 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 167/492 (33%), Positives = 256/492 (52%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 10 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYK- 68 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K F++DT + T PR Sbjct: 69 -VNYVSNFTDVDDKMIKAAAEQ------GITVPQLAEKYINAFMEDTAAINIEPATLHPR 121 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I ++I +Q +I G+AY + ++ + +YG S + +D+ ++G Sbjct: 122 ATENITEIIKFVQGLIEKGYAYPKDGDVYYRARKFNHYGQLSGQSLDDLEVGASEHVSAD 181 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 182 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 241 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 242 EFPHHENEIAQSEAETGQK-FVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 295 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQTAFDNLTYREQDADEGDVQE 353 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 ++A+ +D+N + I +++L + + + Sbjct: 354 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSLGAIQAIKKELVEL 413 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G++ + N+ I++L++ER I K K F+ +D IR L+ +G ILED Sbjct: 414 MSIFGVK-LEASDNQINDEKIKQLIEERNIARKNKDFARSDEIRDNLKKQGIILEDT--- 469 Query: 449 DNGQRMTRWKQK 460 + TR+K++ Sbjct: 470 ---PQGTRYKKE 478 >gi|306825734|ref|ZP_07459073.1| cysteine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432095|gb|EFM35072.1| cysteine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 447 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMEDIIRFVTDLIEKGYAYESQGDVYFRVEKSHNYARLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGSGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R HYR+PI+FT + + +AE L T GI+D Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGIVDAGELQDFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++ + D N+ + I + ++A+ + + A + GI +E L+ + Sbjct: 346 VAVMDEDFNSANGITVVFEMAKWINSGNYDASVKKSLAAMLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|56808516|ref|ZP_00366253.1| COG0215: Cysteinyl-tRNA synthetase [Streptococcus pyogenes M49 591] gi|209560085|ref|YP_002286557.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes NZ131] gi|209541286|gb|ACI61862.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes NZ131] Length = 447 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYIGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++E+L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHEMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|261599941|dbj|BAI45221.1| cysteinyl tRNA synthetase [Beta vulgaris] Length = 582 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 178/510 (34%), Positives = 269/510 (52%), Gaps = 74/510 (14%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +KK + +YNT+ RK F+ + MYVCG T YDF+HIG+AR + FD+LYR L+Y Sbjct: 80 IKKDLWVYNTMSRKKEIFKPKVDGKVGMYVCGVTAYDFSHIGHARAYVTFDILYRYLKYL 139 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + C YVRN TD+DDKII RA + + + ++ + +F +D + L CL P+ Sbjct: 140 GYDVC--YVRNFTDVDDKIIARANE------VGENPISLSRRFCDEFHQDMSYLHCLPPS 191 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR ++H+PQ+I +I+ I+ +G AY + ++ F P+YG S RK+++ + G RV Sbjct: 192 VEPRVSDHMPQIIDMIKQIVDNGFAYGVDGDVYFSVEKFPDYGRLSGRKLEDNRAGERVA 251 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NPADF LWK + EP WESPWG GRPGWHIECSAMSS YLG FDIHGGG+DL Sbjct: 252 IDSRKRNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSSVYLGYSFDIHGGGMDL 311 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEI QSC A W+HNGF+ + KMSKS GNF TI +++E Sbjct: 312 MFPHHENEIVQSCAACCESN-IRYWVHNGFVTINSEKMSKSLGNFFTIRQVIEL------ 364 Query: 301 SWPAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWPQTSTSK-- 344 + +RL ++ THYR PI+++ Q L +++ LLS++ + + Sbjct: 365 -YHPLALRLFLMGTHYRSPINYSDVLLESASERIFYIYQTLQDSQALLSEYGRANLKDSI 423 Query: 345 --------GIIDPAVLSALYNDLNTVSAIQALHKLAREST-------------KNHDLLP 383 + + + ++ +DL+T + AL + + L Sbjct: 424 PQDIVSCINDLQNSFVISMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKRELRVESLAA 483 Query: 384 IFNASAHIL------------GIEVCKEHLNKNI---SIAIEKLVQERLILLKMKKFSSA 428 + H+L + +E K + +++ ++ER + K K++ + Sbjct: 484 LEKTIKHVLTALGLMPSSYSEALHQLREKALKRVKFSETEVQQKIEERDMARKYKEYEKS 543 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 D IRK+L + G L D T W+ Sbjct: 544 DAIRKELAAVGIALMDS------PEGTTWR 567 >gi|172054928|ref|YP_001806255.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] gi|171701209|gb|ACB54189.1| cysteinyl-tRNA synthetase [Cyanothece sp. ATCC 51142] Length = 486 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 175/493 (35%), Positives = 256/493 (51%), Gaps = 58/493 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + +KIYN+ R++ F + P + MY CG TVYD+ H+G+AR I++D++ R L+++ Sbjct: 4 EMTLKIYNSQTRRLEPFVTLLPGRVTMYCCGVTVYDYCHLGHARSYIIWDMVRRYLQWWG 63 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E VTYV+N TDIDDKI+ RA+QE +++ I+ + + + D L + Sbjct: 64 YE--VTYVQNFTDIDDKILRRAQQE------GVSMADISQRFIEAYFTDIRPLNVMDADQ 115 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR--- 178 PR T++I + LIQ ++ +AY + ++ F + YG S R + G Sbjct: 116 YPRVTDNISGIQQLIQVLLDKNYAYAVDGDVYFHVEAFGEYGKLSGRSQSMMQAGASGRV 175 Query: 179 ---VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 EK KK+P+DF LWK + P EP W SPWG GRPGWHIECSAM LG+ DIHG Sbjct: 176 AVNDLEKTKKKHPSDFALWKSAKPEEPAWHSPWGEGRPGWHIECSAMVRALLGETIDIHG 235 Query: 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 GG DL+FPHHENEIAQS A+ + A W+HNG + + G KMSKS GNF TI ELL Sbjct: 236 GGGDLVFPHHENEIAQSEAANG-KPLAKYWLHNGMVTVNGEKMSKSLGNFTTIRELLN-- 292 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSK--WPQ 339 R VIRL +L HYR+P+DFT + ++ A E + W + Sbjct: 293 ----RPLDPMVIRLFVLQAHYRKPLDFTEEAISSATNGWQTLQQGLRFGEKYEDRLGWQK 348 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 + +A+ +D N+ + L +LA+ + +LL Sbjct: 349 NQELDSAVIEQFKAAMDDDFNSPGGLAVLFELAKNLRREGNLLTHEGKNPTDSDNLQRQW 408 Query: 383 PIFNASAHILGIEVCKEHLNKN----ISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 A ILG+E E ++ I KL+Q+R K+K ++ +D +R+QL+ K Sbjct: 409 QTLVHLAGILGLEAKSEANLEDNQNFDEAEITKLIQQRNEARKVKDYAQSDRLREQLQEK 468 Query: 439 GFILEDYKNPDNG 451 G L D+ N + Sbjct: 469 GITLIDHPNGETS 481 >gi|269468026|gb|EEZ79749.1| cysteinyl-tRNA synthetase [uncultured SUP05 cluster bacterium] Length = 452 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 179/467 (38%), Positives = 253/467 (54%), Gaps = 43/467 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL ++ F IDP+ + MYVCG TVYD+ H+G+AR +++FDV+ R LR ++ Sbjct: 2 LKIYNTLSKQKEVFHPIDPNKVGMYVCGMTVYDYCHMGHARVLVMFDVITRHLRRHF--P 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + I +T++ +D L L P +PR Sbjct: 60 NVEYVRNITDIDDKIIKRA------VENKEDIYSLTNRFIDAMHEDERALGVLPPDVEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+ + QM Y+I+ +I G AY+A N ++ + YG S + +DE + G RV + Sbjct: 114 ATDAMDQMFYMIEALIEKGIAYQAKNGDVYYSVRDFEGYGKLSGKNLDELEAGARVDIET 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KK+P DF+LWK + P EP W SPWG GRPGWHIECSAMS+H+LG FDIHGGG+DL FP Sbjct: 174 DKKDPLDFVLWKMAKPSEPSWSSPWGDGRPGWHIECSAMSTHHLGNHFDIHGGGMDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H GF+N+ KMSKS NF TI +LE S+ Sbjct: 234 HHENEIAQSEGANGC-TFVNTWMHVGFVNINDEKMSKSLNNFFTIRVVLE-------SYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------- 350 +R ++ +HYR P++F+ L A+ L++ D A Sbjct: 286 GETLRYFIMSSHYRSPLNFSDDNLNLAKTSLTRLYTAMRGLSASDAAMDEVSQRFDFESR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCK---- 398 +AL +D NT A+ L +LA+ D L + +GI Sbjct: 346 FNAALDDDFNTPIALSILFELAKAVNLQRDQDIDQANALSQLLQKLGGYIGILQTDADSF 405 Query: 399 -EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + I+ +++R K F+ +D+IR +L G L+D Sbjct: 406 LKRGVDLADEDIDAKIKQRDEAKAYKDFALSDHIRGELPKLGLELKD 452 >gi|319943420|ref|ZP_08017702.1| cysteine--tRNA ligase [Lautropia mirabilis ATCC 51599] gi|319743235|gb|EFV95640.1| cysteine--tRNA ligase [Lautropia mirabilis ATCC 51599] Length = 506 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 176/527 (33%), Positives = 258/527 (48%), Gaps = 89/527 (16%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +K+YN+L R+ +FQ ++ + +YVCG TVYD+ HIG+AR ++ FDV+ R LR Sbjct: 1 MARTLKLYNSLTRRKEDFQPLEAGRVGLYVCGMTVYDYCHIGHARMLVAFDVVQRWLRAR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VTYVRNITDIDDKII RA + + +S +T + +D L P Sbjct: 61 GYQ--VTYVRNITDIDDKIIRRA------VENGETLSSLTGRFIAAMHEDEAALGIQRPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 +PRAT ++PQM+ L+ + +G+AY + + + +F YG + +D+ + G RV Sbjct: 113 LEPRATQYVPQMLDLVSLLEKNGYAYRSGDGDTLFRVRRFAGYGRLGGKSLDDLRAGERV 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 K++P DF+LWK + P EP W+ P+G GRPGWH+ECSAMS+ LG+ FDIHGG Sbjct: 173 AVAAGKEDPFDFVLWKAAKPEEPAEACWQGPFGPGRPGWHLECSAMSTRLLGRQFDIHGG 232 Query: 237 GLDLIFPHHENEIAQSCCAD---RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 G DL FPHHENEIAQS A + W+HNGF+ ++G KMSKS GNF TI ++L Sbjct: 233 GADLQFPHHENEIAQSDAAYFPEGGKSFVRYWLHNGFVQVDGEKMSKSLGNFFTIRDVL- 291 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA--- 350 + + VIR ++ +HYR ++++ L +A L + ++ A Sbjct: 292 ------KKFDGEVIRFFIVRSHYRSQVNYSDAGLDDARESLLRLYNALSTDWPAAQAQVE 345 Query: 351 -------------------------------------------VLSALYNDLNTVSAIQA 367 A+ +D NT A+ Sbjct: 346 GQAGQGAAVSAGAGQAAAAACADGEAARAAVAAIDWSEPRAMRFAEAMDDDFNTPVAVSV 405 Query: 368 LHKLARESTKNHD--LLPIFNASAHILGIEVCK-------------EHLNKNISIAIEKL 412 L +LA + + D + A +LG+ H AI+ L Sbjct: 406 LFELATDLNRTRDPAIERQLRGLAAVLGLLGQDPVAVRRNGLRGAAAHEGDLDDNAIQAL 465 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 V RL K + F+ AD IR+QL G LED G T W++ Sbjct: 466 VDARLAARKARNFAEADAIRQQLAEAGITLED------GPAGTTWRR 506 >gi|289548117|ref|YP_003473105.1| cysteinyl-tRNA synthetase [Thermocrinis albus DSM 14484] gi|289181734|gb|ADC88978.1| cysteinyl-tRNA synthetase [Thermocrinis albus DSM 14484] Length = 490 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 172/511 (33%), Positives = 249/511 (48%), Gaps = 76/511 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNTL ++ EF ++P + +Y CG TVYD +H+G+ R +IVFDVL R L Y Sbjct: 1 MSLRLYNTLTGRVEEFVPLNPPQVLIYTCGVTVYDDSHVGHGRSLIVFDVLRRYLEYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +VRN TD+DDKII +AR+E + ++ + +D + + Sbjct: 61 --RVKFVRNFTDVDDKIINKAREECTHFM------TVANRYIASYYRDMEAIGVRPADVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T HI ++I LIQ +I G+AY + ++ F + P YG SRR +E + G RV Sbjct: 113 PRVTEHIQEIIQLIQGLIDKGYAYVSGGDVYFSVKAFPEYGKLSRRNPEELEAGARVEPS 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + EP W+SPWG GRPGWH EC AM +LG DIHGGGLDL+F Sbjct: 173 EKKRDPLDFALWKAAKAGEPAWDSPWGPGRPGWHTECVAMIFKHLGTTIDIHGGGLDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ A W+HNG + + G+KMSKS GN++T+ E+ + Sbjct: 233 PHHENEIAQAEALTG-RPFARYWVHNGLVTVGGQKMSKSLGNYVTLREVYSR-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 V+RL +LMTHYR P+DF+ ++ E + + T ++ Sbjct: 285 HPDVLRLLVLMTHYRSPLDFSWDKMEETKRSYERLKNAITDAELLKELPSEEVREKHPLL 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTK-NHDLLP----------------- 383 + + L +D NT SA+ L L E K ++L Sbjct: 345 DKIRDAEEKFFADLADDFNTPSALGRLFTLVSEMGKLKKEVLERRRVKTSELDAYQQASE 404 Query: 384 -IFNASAHILGI--------------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSA 428 + I G+ E E + IE L++ R + K ++ A Sbjct: 405 TLLKHLRGIFGLFEDLYPVCSVRRVVEKEMEAGHVLDERLIELLIEVRSKARQEKAYAIA 464 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 D IR +L G ILED T+WK+ Sbjct: 465 DLIRDRLRELGIILEDT------PAGTKWKR 489 >gi|332076428|gb|EGI86891.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA41301] Length = 447 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|88705054|ref|ZP_01102766.1| Cysteinyl-tRNA synthetase [Congregibacter litoralis KT71] gi|88700749|gb|EAQ97856.1| Cysteinyl-tRNA synthetase [Congregibacter litoralis KT71] Length = 462 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 199/481 (41%), Positives = 280/481 (58%), Gaps = 46/481 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++YNT + F+ + P+ + MYVCGPTVY+ AHIGNARP++VFD L+RLL+ Y Sbjct: 1 MDLQLYNTRAKTKEVFRPLSPNRVTMYVCGPTVYNLAHIGNARPVVVFDTLFRLLQTRYD 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y RNITDIDDKI+ A+++ AI +I + T ++ +DT +L L PT + Sbjct: 61 E--VVYARNITDIDDKIMLAAKEQ------GVAIDVIAKEFTDKYREDTAQLNALPPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT++I MI L + +I GHAY + ++F +S+ NYG S R +D+ G RV Sbjct: 113 PHATDNIGPMIALTEKLIEKGHAYASEGHVLFAVTSMENYGQLSGRSLDDMLAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK S+ EPGW+SPWGR RPGWH+ECSAM +LG DIHGGG DLIF Sbjct: 173 DYKRHPGDFVLWKPSSDDEPGWDSPWGRVRPGWHLECSAMIREHLGPTIDIHGGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQSCCA E +W+HN FL+++G KMSKS GN TI ELL + Sbjct: 233 PHHENELAQSCCAFGDE-FVRVWMHNAFLDMDGEKMSKSLGNVATIRELLTR-------Y 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLS 353 V+R A+L HYR P++F+ L +AE L+ + T S I+ A S Sbjct: 285 RGEVLRFALLSAHYRSPLNFSEALLAQAEQTLTNFYNTLRSVQHIELDEDVPLEGEAFYS 344 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILG---------IEVCKE 399 AL +DLNT AI LH LAR+ K + L A+ ++LG ++ Sbjct: 345 ALCDDLNTPLAISELHALARDINKAAEDDKPQLKARLLAAGNLLGVLQHDPLEWLQGDSA 404 Query: 400 HLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + ++ A++ L+ ER K ++ AD IR++L + G +LED T W+ Sbjct: 405 STDSSLDADAVDALIAERAAAKADKNYARADGIREELTAAGIVLEDS------AGGTLWR 458 Query: 459 Q 459 + Sbjct: 459 R 459 >gi|306826617|ref|ZP_07459922.1| cysteine--tRNA ligase [Streptococcus pyogenes ATCC 10782] gi|304431195|gb|EFM34199.1| cysteine--tRNA ligase [Streptococcus pyogenes ATCC 10782] Length = 447 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|194468084|ref|ZP_03074070.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri 100-23] gi|194452937|gb|EDX41835.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri 100-23] Length = 470 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 166/492 (33%), Positives = 255/492 (51%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAAEQ------GITVPQLAEKYINAFMEDTAAINIEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I ++I +Q +I G+AY + ++ + +YG S + +D+ ++G Sbjct: 114 ATENITEIIKFVQGLIEKGYAYPKDGDVYYRARKFNHYGQLSGQSLDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 174 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 234 EFPHHENEIAQSEAETGQK-FVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIID- 348 + V+R M T YR PI ++ LT A+ L+ + + +G + Sbjct: 287 -KEVDPQVLRFFMATTQYRRPIQYSQANLTAAQNNLNHIQTAFDNLTYREQDADEGDVQG 345 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 ++A+ +D+N + I +++L + + + Sbjct: 346 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVNLGAIQAIKKELVEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G++ + N+ I++L++ER + K K F+ +D IR L+ +G ILED Sbjct: 406 MSIFGVK-LEASDNQINDEKIKQLIEERNVARKNKDFARSDEIRDNLKKQGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TR+K++ Sbjct: 462 ---PQGTRYKKE 470 >gi|21911208|ref|NP_665476.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS315] gi|28896585|ref|NP_802935.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes SSI-1] gi|25009287|sp|Q8K5T7|SYC_STRP3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21905420|gb|AAM80279.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS315] gi|28811839|dbj|BAC64768.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes SSI-1] Length = 447 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TDIDDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDIDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|302024504|ref|ZP_07249715.1| cysteinyl-tRNA synthetase [Streptococcus suis 05HAS68] gi|330833540|ref|YP_004402365.1| cysteinyl-tRNA synthetase [Streptococcus suis ST3] gi|329307763|gb|AEB82179.1| cysteinyl-tRNA synthetase [Streptococcus suis ST3] Length = 447 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 168/468 (35%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+ N TD+DDKII+ A + ++ K F +D +L T PR Sbjct: 61 -VTYISNFTDVDDKIIKAANE------AGMTTKELSDKFIAAFKEDVAKLGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G+AYEA+ ++ F NY + + + + + G E Sbjct: 114 VIDYMGEIIDFVQVLIDKGYAYEASGDVYFRVEKAENYARLANKTLSDLEAGASGRVEGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GQLKEHPFDFALWKTAKPGEVSWESPWGAGRPGWHIECSVMATEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS C + AN W+HN LN+ KMSKS GNF+T +++LE Sbjct: 234 FPHHTNEIAQSECKTG-QTFANYWMHNAMLNINDEKMSKSLGNFLTAHDMLE-------Q 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIID--------PAV 351 V+R + HYR P+++T + +++AEI L T T + +D A Sbjct: 286 IDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVDKSALELHLAAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I A+ A+ + + F + GI +E L+ Sbjct: 346 EAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLEVFGIVFEEEVLDS----E 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IEALIAERQAARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|169824112|ref|YP_001691723.1| cysteinyl-tRNA synthetase [Finegoldia magna ATCC 29328] gi|229558634|sp|B0S0W3|SYC_FINM2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167830917|dbj|BAG07833.1| cysteinyl-tRNA synthetase [Finegoldia magna ATCC 29328] Length = 462 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 172/478 (35%), Positives = 247/478 (51%), Gaps = 47/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLYNTLTRKKEEFKPIKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT-HQP 123 V +V N TDIDDKII +A+ E N IT K Q ++ + + L P Sbjct: 59 NVKFVSNFTDIDDKIINKAKDE------NIDFREITKKYIQAYLDNVSGLNFDEDDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATEYIDEMIKFVKTLEDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNS 172 Query: 184 HKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK+ EP WESPWG GRPGWH+ECS MS LG DIH GG DL F Sbjct: 173 EKKNPMDFALWKKRKEESEPAWESPWGMGRPGWHLECSVMSKTILGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS AN W+HN + ++ KMSKS NF + ++ + + Sbjct: 233 PHHENEIAQSETCTGAH-FANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EKEF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------QTSTSKG 345 VIRL +L HYR PIDF+ L + L + + + Sbjct: 285 DLEVIRLWLLSVHYRNPIDFSHDTLVATKNSLDRLYTAKKFLNRILENSSEKEEKDDNIK 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------DLLPIFNASAHILGIE 395 A+ +D+NT AI L + KN+ D + + +++LGI Sbjct: 345 TFREKFEQAMDDDINTADAISVLFDFIKYINKNYDENTSKNILLDAKKLMDDISYVLGIL 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 ++ + ++ IE+L+++R K K F AD IR +L S G +L+D ++ +R Sbjct: 405 FKED--DDDLDSEIEELIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRDGVIWER 460 >gi|19746854|ref|NP_607990.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] gi|24418689|sp|Q8NZD1|SYC_STRP8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|19749094|gb|AAL98489.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] Length = 447 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++E+L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHEMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|158340032|ref|YP_001521202.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] gi|158310273|gb|ABW31888.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] Length = 496 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 175/509 (34%), Positives = 243/509 (47%), Gaps = 66/509 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++NTL + F ++ P + MY CG TVYD H+G+AR + +DVL R L++ Sbjct: 1 MNLTLHNTLTNQKEPFISVHPERVVMYCCGVTVYDNCHLGHARSYMAWDVLRRYLKWCGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N TDIDDKI+ RA E + ++ + + +D RL L Sbjct: 61 --TVRYVQNFTDIDDKILHRAIVE------GITMQEVSDRYINAYFRDIRRLNILDADDY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK--MGTRVP 180 PR T HIP + LIQ + G+AY + ++ + YG S RK+++ K G RV Sbjct: 113 PRVTEHIPAIHQLIQALEQQGYAYAIDGDVYYSVRQFSEYGKLSGRKLEQLKVGAGGRVA 172 Query: 181 EKYH---KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K++P DF LWK + P EP WESPWG GRPGWHIECSAM LG+ DIHGGG Sbjct: 173 DDTQDQKKRDPFDFALWKSAKPGEPAWESPWGLGRPGWHIECSAMIRARLGETIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK-K 296 DL+FPHHENEIAQS + A W+HNG + + G KMSKS GNF TI +LL+ Sbjct: 233 GDLVFPHHENEIAQSEVLTG-QPLARYWLHNGMVTVNGEKMSKSLGNFTTIRDLLDGGWA 291 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------- 337 +RL +L HYR+P+DFT + + Sbjct: 292 DYPEPVDPMAVRLFVLQGHYRKPLDFTKDAIVASINSWQTLKAGILFGNRHRVALSSPFA 351 Query: 338 -----PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL---------- 382 PQ +S+ SA+ +DLNT A+ L +LA+ + + L Sbjct: 352 SIQSSPQEPSSEDPWTKRFQSAMDDDLNTSGALAVLFELAKALQREGNRLVHEGKSQSSP 411 Query: 383 -------PIFNASAHILGIEVC-----KEHLNKNISIAIEKLVQERLILLKMKKFSSADY 430 A +LG+E E K I L+Q+R K + F +AD Sbjct: 412 ELLWQQWQTLLYLAQVLGLEAKVNSDTDEATGKLDEAVITDLIQQRQTARKQRDFITADD 471 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IR QL + G + D + TRW + Sbjct: 472 IRAQLSAAGITVVDQPDGA-----TRWHR 495 >gi|125718833|ref|YP_001035966.1| cysteinyl-tRNA synthetase [Streptococcus sanguinis SK36] gi|125498750|gb|ABN45416.1| Cysteinyl-tRNA synthetase, putative [Streptococcus sanguinis SK36] Length = 447 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 168/468 (35%), Positives = 243/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +A L T S Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQAESAQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKGALAELLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|158337192|ref|YP_001518367.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] gi|158307433|gb|ABW29050.1| cysteinyl-tRNA synthetase [Acaryochloris marina MBIC11017] Length = 504 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 176/518 (33%), Positives = 254/518 (49%), Gaps = 74/518 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R F ++ ++ Y CG TVYD+ H+G+AR IV+D++ R L++ Sbjct: 1 MPLQIYNTLSRTKEPFTTLEAGKVQFYCCGVTVYDYCHLGHARSYIVWDIVRRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+N TDIDDKI++RA + +T Q + D RL LA Sbjct: 61 D--VTYVQNYTDIDDKILKRAAE------TGQDWQAVTQTFIQAYEADMARLNILAADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 P+AT IP +I LI+++ G AY A ++ F P YG S R +D+ + G Sbjct: 113 PKATESIPAIINLIRDLETRGVAYAAQGDVYFAVERFPGYGKLSGRLLDQMEAGASGRVE 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P + K++P DF LWK + P EP W+SPWG GRPGWHIECSAM + LG DIH G Sbjct: 173 QLEPAEQKKRHPLDFALWKATKPGEPSWDSPWGPGRPGWHIECSAMVNQCLGAEIDIHAG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK- 295 G DL+FPHHENEIAQS + A W+HNGF+N+ G KMSKS GNF TI +LL+T Sbjct: 233 GSDLVFPHHENEIAQSEAGL-TPRLARYWMHNGFVNVGGEKMSKSLGNFTTIRQLLDTPL 291 Query: 296 -KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST------------ 342 G++ +RL +L YR+PIDFT + A+ + Sbjct: 292 PILAGKTLHPMALRLFVLQAQYRKPIDFTDDAIAAAQQSWQTLKEGLLFGYDYGAQLQWS 351 Query: 343 ----------------SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP--- 383 + A+ +D N+ S + L +LA++ K ++L Sbjct: 352 DYTDPDFGNPANMRIPDPNVAVQRFQLAMDDDFNSPSGLVVLFELAKDLRKAGNILSHQG 411 Query: 384 --------------IFNASAHILGIEVCKEHL-------NKNISIAIEKLVQERLILLKM 422 A +LG+E + + AIE L++ER + Sbjct: 412 ETSTTSEQLREQWQTLVCLAQVLGLEAQPDSDAASTDSEDGLSEQAIEALIEERQAARQA 471 Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 K ++ +D IR QL+++G L D +TRW ++ Sbjct: 472 KNYAESDRIRDQLKAEGITLIDQAGG-----VTRWLRE 504 >gi|94989286|ref|YP_597387.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94993175|ref|YP_601274.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] gi|94542794|gb|ABF32843.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94546683|gb|ABF36730.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] Length = 447 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDSEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|107028742|ref|YP_625837.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] gi|116690099|ref|YP_835722.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia HI2424] gi|254247826|ref|ZP_04941147.1| Cysteinyl-tRNA synthetase, class Ia [Burkholderia cenocepacia PC184] gi|123370109|sp|Q1BHP1|SYC_BURCA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200131|sp|A0K8K2|SYC_BURCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|105897906|gb|ABF80864.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] gi|116648188|gb|ABK08829.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia HI2424] gi|124872602|gb|EAY64318.1| Cysteinyl-tRNA synthetase, class Ia [Burkholderia cenocepacia PC184] Length = 465 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 178/484 (36%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D T L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDETALGIQRPDVE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + +YG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQAADGDVNYSVRKFADYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ EP W S +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKRAKADEPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDTLALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 SGAAQAGGLAADEIEAQIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|157150688|ref|YP_001449668.1| cysteinyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|157075482|gb|ABV10165.1| cysteinyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] Length = 447 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 242/465 (52%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I +++++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVEFMADIIRFVEDLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTC-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R HYR+PI+FT + + +A L T S Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSDQLQDFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKTAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + + F++AD IR +L ++G L D K+ R Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTKDGVRWTR 446 >gi|303234834|ref|ZP_07321459.1| cysteine--tRNA ligase [Finegoldia magna BVS033A4] gi|302493952|gb|EFL53733.1| cysteine--tRNA ligase [Finegoldia magna BVS033A4] Length = 462 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 172/478 (35%), Positives = 246/478 (51%), Gaps = 47/478 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ I N+ +YVCGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLYNTLTRKKEEFKPIKEKNVGIYVCGPTVYNYIHVGNARPIVVFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT-HQP 123 V +V N TDIDDKII +A+ E N IT K Q ++ + + L P Sbjct: 59 NVKFVSNFTDIDDKIINKAKDE------NIDFREITKKYIQAYLNNVSGLNFDEDDTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 +AT +I +MI ++ + G AY + + FD + +YG S++ ID+ + G R+ Sbjct: 113 KATEYIDEMIKFVKTLEDKGAAYNVDGNVYFDITKAKDYGKLSKKNIDDLRAGARIDVNS 172 Query: 184 HKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KKNP DF LWK+ EP WESPWG GRPGWH+ECS MS LG DIH GG DL F Sbjct: 173 EKKNPMDFALWKKRKEESEPAWESPWGMGRPGWHLECSVMSKSILGDTIDIHAGGEDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS AN W+HN + ++ KMSKS NF + ++ + + Sbjct: 233 PHHENEIAQSETCTGAH-FANYWLHNSMITVDKEKMSKSKNNFFLLKDI-------EKEF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------QTSTSKG 345 VIRL +L HYR PIDF+ L + L + + + Sbjct: 285 DLEVIRLWLLSVHYRNPIDFSHDTLVATKNSLDRLYTAKKFLNRILENSSEKEEKDDNIK 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------DLLPIFNASAHILGIE 395 A+ +D+NT AI L + KN+ D + + +++LGI Sbjct: 345 TFREKFEQAMDDDINTADAISVLFDFIKYINKNYDENTSKNILLDAKKLMDDISYVLGIL 404 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 ++ + ++ IE L+++R K K F AD IR +L S G +L+D ++ +R Sbjct: 405 FKED--DDDLDSEIEDLIEQRNAARKEKDFKKADEIRDKLLSMGIVLKDTRDGVIWER 460 >gi|299821033|ref|ZP_07052921.1| cysteine--tRNA ligase [Listeria grayi DSM 20601] gi|299816698|gb|EFI83934.1| cysteine--tRNA ligase [Listeria grayi DSM 20601] Length = 473 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 171/485 (35%), Positives = 251/485 (51%), Gaps = 51/485 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NTL R+ F+ + + MYVCGPTVY++ HIGNARP+I FD + R L Y + Sbjct: 3 LQLFNTLTREKEVFKPLVNGKVSMYVCGPTVYNYIHIGNARPIIFFDTVRRYLTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A + ++ + + K F +D +L T PR Sbjct: 62 -VNYVSNFTDVDDKLIRAAEE------LDLTVPEVADKFIHAFFEDVDQLNVARATTNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I IQ ++ G+AYE+ ++ F T YG S + + + + G RV Sbjct: 115 VTENMQEIIDFIQALVDKGYAYESAGDVYFATKKFDAYGKLSHQPLQDLQHGIRVETTDK 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESPWG+GRPGWHIECSAM+ +LG DIH GG DLIFPH Sbjct: 175 KRDELDFTLWKAAKPGEINWESPWGKGRPGWHIECSAMAQKFLGDTIDIHAGGHDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE+EIAQS ++ AN W+HN FLN++G KMSKS GNFIT++++L Sbjct: 235 HEDEIAQSEARTG-KQFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLAEH-------AP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 V+R ML HYR PI + L +A+ L + + Sbjct: 287 DVVRFFMLSVHYRNPISLSEDTLEDAKNSLERLRTAYQNIDYRIQHAEEDVADEETTEDW 346 Query: 346 -----IIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASA 389 + + + +D NT +AI H+LA+ + + L + A Sbjct: 347 LEQLTELKQSFEDEMDDDFNTANAITVFHELAKRANIYLAEEDVSITVLREFLSMLQLFA 406 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 ++LG+++ E + IE L++ERL + F AD IR+ L SK ILED + Sbjct: 407 NVLGLKLETEQAFELADEEIEALIEERLKARNERNFERADEIRELLRSKHIILEDTAHGT 466 Query: 450 NGQRM 454 +R Sbjct: 467 RFKRG 471 >gi|327460677|gb|EGF07012.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1] gi|327488752|gb|EGF20551.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1058] Length = 447 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPKEVADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I ++ ++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHDYAKLANKTLADLELGASGRTNEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +A L T G D Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSNQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|186476148|ref|YP_001857618.1| cysteinyl-tRNA synthetase [Burkholderia phymatum STM815] gi|184192607|gb|ACC70572.1| cysteinyl-tRNA synthetase [Burkholderia phymatum STM815] Length = 465 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 181/487 (37%), Positives = 259/487 (53%), Gaps = 54/487 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQNFVPLHEGEVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 K--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIAALHEDADALGIERPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +PQM+ +I+ + +G+AY+A + ++ + NYG+ S + +++ + G RV Sbjct: 114 PRATEFVPQMLGMIEKLEANGYAYQAADGDVNYAVRKFENYGALSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK+S P EP GWES +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQSKPDEPADTGWESKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A R + N W+HNG++ ++ KMSKS GNF TI E+L Sbjct: 234 DLQFPHHENEIAQSEGATR-QTFVNYWMHNGYVQIDNEKMSKSLGNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----QTSTSKGIID------ 348 + A V+R + HYR P++++ L +A L++ T G +D Sbjct: 288 --KYDAEVVRFFIARAHYRSPLNYSDVHLDDARGALARLYTALKDTPPQAGEVDWNEAYA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF----------------NASAHIL 392 +A+ +D NT A+ L +L E + D Sbjct: 346 QRFRAAMNDDFNTPVAVSVLFELVSEVNRTRDAALARQLHGLGLVLGLLGREPRVYLQQA 405 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 G V + L+ + AIE + R+ + K ++ AD IRK+L G LED Sbjct: 406 GASVGEGALD---TAAIEAKIAARVAAKQAKDYAEADRIRKELLDAGIALEDKPGG---- 458 Query: 453 RMTRWKQ 459 +T W++ Sbjct: 459 -LTEWRR 464 >gi|281492464|ref|YP_003354444.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] gi|281376128|gb|ADA65619.1| Cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] Length = 448 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 164/473 (34%), Positives = 253/473 (53%), Gaps = 42/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A E N + ++ + F +DT L + P+ Sbjct: 60 -VQYISNFTDVDDKIIKAAANE------NISTKELSERYIAAFYEDTDALNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI IQ ++ AY + ++ F S +Y + + + + G E Sbjct: 113 ATEFIEAMIEFIQELVDKEFAYVSQGDVYFRVSKSKDYAKLANKNLADLLAGASGRTDEE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK + E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TKLKESPADFALWKSAKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS ++ N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQSEAKTG-QRFVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVVN----- 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 ++R + THYR P++FT LTEAE + K ++ Sbjct: 287 --PQILRFFLATTHYRRPVNFTDDALTEAENNIKKIENAYRHLDEQAESNLSALTTFRND 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + + + K + ++ F+ ILGI+ E ++ Sbjct: 345 FVAAMDEDFNIANGMTVFYDFVSWVNKGNGGPEVKEFFDQVLEILGIKFKFEQ---SLDS 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE +++ R + +++ F+ +D IR L+++G +LED K+ RW ++ Sbjct: 402 EIEAMIEARQLAREVRDFAKSDEIRDALKAQGIVLEDTKD------GVRWHRE 448 >gi|301793788|emb|CBW36177.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae INV104] gi|332204613|gb|EGJ18678.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA47901] Length = 447 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 175/468 (37%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++ +I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEGLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|296327724|ref|ZP_06870264.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155162|gb|EFG95939.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 473 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 267/492 (54%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V YV+N TD+DDK+I +A E N +I I + + + +DT+++ +P Sbjct: 61 -VNYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKINLKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +IQ+++ G+AYE+N ++ F+ + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIQSLVDKGYAYESNGDVYFEVKKYRDGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENEMAQSKCGCGG-TFARYWMHNGYININGEKMSKSSGSFVLLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L +HYR+P++F+ L + + L + T +D Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 + A+ D NT A+ + +L + K D I Sbjct: 346 ATKKEMEAKFIEAMNEDFNTAQALGHIFELVKAVNKTLDEANISKKGLEVIDEVYSYLVM 405 Query: 390 ---HILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVQLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|81429293|ref|YP_396294.1| cysteinyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] gi|109894906|sp|Q38UZ6|SYC_LACSS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78610936|emb|CAI55988.1| Cysteinyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] Length = 468 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 165/491 (33%), Positives = 251/491 (51%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL R+ F+ ++ ++MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 2 LTVYNTLTRQKETFKPLEEGRVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A E N + + + F +DT L T PR Sbjct: 61 -VDYVSNFTDVDDKMIKAANAE------NITVPELADRYITAFKEDTKALNIEPATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT++I +++ IQ++I +AY + ++ + YG + + +D+ + G Sbjct: 114 ATDNIEEIVAFIQDLIAKDYAYAVDGDVYYRARKFKAYGHLAGQDLDQLEQGASEHTATE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK E WESPWG+GRPGWHIECS MS+ YLG DIHGGG DL Sbjct: 174 ETLRKEDPIDFALWKAEKGNEIAWESPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + N W+HNGF+ + + +KMSKS GNF+T+++L+ Sbjct: 234 EFPHHENEIAQSEAKTG-QTFVNYWLHNGFVTVGDDDQKMSKSLGNFVTVHDLI------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------- 343 + +R M T YR PI ++ L EA+ L + T + Sbjct: 287 -QEVNPQALRFLMSSTQYRRPIRYSQSLLAEAQTNLDRLKTTLDNLAFRQPTAEPGEDQI 345 Query: 344 ----KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 ++ A ++A+ +D N + + L++LA+ S + + L Sbjct: 346 VMDKAAELEAAFVTAMDDDFNVQNGLTQLYELAKLSNQYLEQPTVQSDTLTSLATRLTRL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ ++ + +E L++ER K F+ +D IR QL+++G ILED Sbjct: 406 LAIFGVVF---KADQLLDTEVESLIEERQAARAAKDFAKSDAIRDQLKAQGIILEDT--- 459 Query: 449 DNGQRMTRWKQ 459 + RW++ Sbjct: 460 ---PQGMRWRR 467 >gi|257866301|ref|ZP_05645954.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257873183|ref|ZP_05652836.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC10] gi|257800259|gb|EEV29287.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257807347|gb|EEV36169.1| cysteinyl-tRNA synthetase [Enterococcus casseliflavus EC10] Length = 470 Score = 547 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 169/494 (34%), Positives = 248/494 (50%), Gaps = 62/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL R+ FQ ++ ++MYVCGPTVY++ HIGN R + FD + R Y Sbjct: 2 IKIYNTLTREKEVFQPLEEKKVKMYVCGPTVYNYIHIGNGRSTVSFDTVRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ + + + F +DT L T PR Sbjct: 60 TVDYLMNFTDVDDKIIRAAKE------LGTTAPEVAERFINAFNEDTAALNVKPATMNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---PE 181 +HI +I I ++ G+AY N ++ + T +YG S + IDE ++G E Sbjct: 114 VMDHIEDIIAFIVALVEKGYAYPVNGDVYYRTRKFAHYGQLSDQSIDELEVGASQRIGEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 + K++P DF LWK + E WESPWG GRPGWHIECS M++ +LG+ DIHGGG DL Sbjct: 174 QKIKEDPLDFALWKAAKGDEIAWESPWGAGRPGWHIECSVMATKHLGETIDIHGGGQDLT 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGG 299 FPHHENEIAQS + AN W+HNG++ + + KMSKS GNF+T++E++ Sbjct: 234 FPHHENEIAQSEAKTG-KTFANYWMHNGYVTIGEDEEKMSKSLGNFVTVHEMV------- 285 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------- 340 + V+R + T YR PI ++ L EA+ L K T Sbjct: 286 KKVDPQVLRFFLATTQYRRPIKYSETTLHEAQTNLQKLRTTYENAKFRLNSSHYQASDEE 345 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNA 387 + + + + +D N + I +++LA+ + F+ Sbjct: 346 INAAVLEEFEERFVKEMDDDFNAANGITVVYELAKWLNLASEDPETDLALLAAGLAKFSE 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I GI E L + IE+L+ ER+ K K F+ +D IR +L+ +G ILED Sbjct: 406 WLTIFGIYFVSEEL---LDEEIEQLINERIAARKAKDFARSDQIRDELKEQGIILEDT-- 460 Query: 448 PDNGQRMTRWKQKP 461 + TRW+++ Sbjct: 461 ----PQGTRWRREA 470 >gi|294665915|ref|ZP_06731181.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604319|gb|EFF47704.1| cysteinyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 476 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 197/496 (39%), Positives = 267/496 (53%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I +I +GHAY A ++F SS YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIDQLIANGHAYAAEGHVLFSVSSFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +R A+L HYR+P+D++ + +A+ L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALETESGGDVAISKT 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNASAHILGIE 395 V SAL +DLNT A+ + +A ++ + + A A +LG Sbjct: 346 IPAEVESALDDDLNTPLALSVMASIASDARALRSELMHSGQASARMAQLQAARAKLLGAG 405 Query: 396 VCKEHLNKN------------ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 V L ++ I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 VALGLLQQDPAAWFSRGTDVGDDARITALVEERSAAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|139474431|ref|YP_001129147.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] gi|134272678|emb|CAM30949.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] Length = 447 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 162/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRIDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + L +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKALHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARTNRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|53719852|ref|YP_108838.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|53723757|ref|YP_103282.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|67642953|ref|ZP_00441703.1| cysteine--tRNA ligase [Burkholderia mallei GB8 horse 4] gi|76809388|ref|YP_334067.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121599658|ref|YP_993471.1| cysteinyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124385862|ref|YP_001029097.1| cysteinyl-tRNA synthetase [Burkholderia mallei NCTC 10229] gi|126441734|ref|YP_001059571.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 668] gi|126449503|ref|YP_001080979.1| cysteinyl-tRNA synthetase [Burkholderia mallei NCTC 10247] gi|126452065|ref|YP_001066849.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|134277835|ref|ZP_01764550.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|167001797|ref|ZP_02267589.1| cysteine--tRNA ligase [Burkholderia mallei PRL-20] gi|167720284|ref|ZP_02403520.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei DM98] gi|167739281|ref|ZP_02412055.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 14] gi|167816497|ref|ZP_02448177.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 91] gi|167830172|ref|ZP_02461643.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 9] gi|167846407|ref|ZP_02471915.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei B7210] gi|167894988|ref|ZP_02482390.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 7894] gi|167903372|ref|ZP_02490577.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177] gi|167916840|ref|ZP_02503931.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 112] gi|167919625|ref|ZP_02506716.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei BCC215] gi|217420917|ref|ZP_03452422.1| cysteine--tRNA ligase [Burkholderia pseudomallei 576] gi|226198973|ref|ZP_03794536.1| cysteine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|237812906|ref|YP_002897357.1| cysteine--tRNA ligase [Burkholderia pseudomallei MSHR346] gi|242315930|ref|ZP_04814946.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|254178125|ref|ZP_04884780.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|254184417|ref|ZP_04891007.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|254191450|ref|ZP_04897954.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|254197349|ref|ZP_04903771.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|254200234|ref|ZP_04906600.1| cysteinyl-tRNA synthetase [Burkholderia mallei FMH] gi|254209314|ref|ZP_04915660.1| cysteinyl-tRNA synthetase [Burkholderia mallei JHU] gi|254258938|ref|ZP_04949992.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1710a] gi|254297083|ref|ZP_04964536.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|254358017|ref|ZP_04974290.1| cysteinyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|61216158|sp|Q62J37|SYC_BURMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|61216161|sp|Q63SS8|SYC_BURPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894887|sp|Q3JQT6|SYC_BURP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200132|sp|A3ML43|SYC_BURM7 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200133|sp|A2SAX8|SYC_BURM9 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200134|sp|A1V5G8|SYC_BURMS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200135|sp|A3NWX8|SYC_BURP0 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166200136|sp|A3NB50|SYC_BURP6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52210266|emb|CAH36245.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|52427180|gb|AAU47773.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|76578841|gb|ABA48316.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121228468|gb|ABM50986.1| cysteinyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124293882|gb|ABN03151.1| cysteine--tRNA ligase [Burkholderia mallei NCTC 10229] gi|126221227|gb|ABN84733.1| cysteine--tRNA ligase [Burkholderia pseudomallei 668] gi|126225707|gb|ABN89247.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|126242373|gb|ABO05466.1| cysteine--tRNA ligase [Burkholderia mallei NCTC 10247] gi|134251485|gb|EBA51564.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|147749830|gb|EDK56904.1| cysteinyl-tRNA synthetase [Burkholderia mallei FMH] gi|147750087|gb|EDK57158.1| cysteinyl-tRNA synthetase [Burkholderia mallei JHU] gi|148027144|gb|EDK85165.1| cysteinyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|157807476|gb|EDO84646.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|157939122|gb|EDO94792.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|160699164|gb|EDP89134.1| cysteinyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|169654090|gb|EDS86783.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|184214948|gb|EDU11991.1| cysteinyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|217396329|gb|EEC36346.1| cysteine--tRNA ligase [Burkholderia pseudomallei 576] gi|225929073|gb|EEH25097.1| cysteine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|237504389|gb|ACQ96707.1| cysteine--tRNA ligase [Burkholderia pseudomallei MSHR346] gi|238524180|gb|EEP87614.1| cysteine--tRNA ligase [Burkholderia mallei GB8 horse 4] gi|242139169|gb|EES25571.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|243062482|gb|EES44668.1| cysteine--tRNA ligase [Burkholderia mallei PRL-20] gi|254217627|gb|EET07011.1| cysteine--tRNA ligase [Burkholderia pseudomallei 1710a] Length = 465 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 246/484 (50%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R +F P +RMYVCG TVYD+ HIG+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQDFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDIVQRWLRARGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + T D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIQSLTRRFTDAMNADFDALGVERPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATEFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFANYGRLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P EP WES +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPQEPAGASWESKYGAGRPGWHIECSAMGCTLLGAHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK----------GIID 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 288 --KFDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDATPDAQPLDWSEAHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA-------------HILGIE 395 +A+ +D NT A+ L +LA E + + L Sbjct: 346 QRFAAAMNDDFNTAVAVAVLFELATEVNRTREPALARQLRLLAGLLGLLGREPREFLQHA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 AGAARTGALEPHEIEARIAARVAAKQAKNYAEADRIRAELLEAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|42518493|ref|NP_964423.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] gi|61216256|sp|Q74L26|SYC_LACJO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|41582778|gb|AAS08389.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] Length = 470 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 170/493 (34%), Positives = 251/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 1 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH + + + + F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARKEHT------TVEKLAERYIKAFMEDTEALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 113 ATHEIKEIIDFVQDLIDKGVAYEVDGDVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 172 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 287 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLNDENETLED 344 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFN 386 + A+ +D N +A+ ++ LA + + Sbjct: 345 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLATTLNNHLQKDQVDKPALKRAKKLLI 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ +E IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 405 AWLEIFGVSFKEEQAEN--DDEIEKLIAQRDEARKNKDWAESDRLRDELQAKGIVIEDT- 461 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 462 -----PQGTRWHR 469 >gi|197334356|ref|YP_002156417.1| cysteinyl-tRNA synthetase [Vibrio fischeri MJ11] gi|197315846|gb|ACH65293.1| cysteinyl-tRNA synthetase [Vibrio fischeri MJ11] Length = 460 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 172/482 (35%), Positives = 254/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L R+ EF+ I + MYVCG T+YD HIG+ R + FDV+ R LR+ + Sbjct: 1 MKIYNSLTRQKEEFKPITEGKVGMYVCGVTIYDLCHIGHGRTFVSFDVISRYLRFLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +T+VRNITDIDDKII+RA + + +T + D L P +PR Sbjct: 60 -LTFVRNITDIDDKIIKRAAEN------GETCDALTERLIADMHADFDALNMKRPDVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--PE 181 AT +I +++ L++ +I G AY A N +++F+ YG SR+ +++ + G+RV E Sbjct: 113 ATEYIKEIVALVERLIERGFAYVASNGDVMFEVKKYDEYGRLSRQDLEQLQAGSRVTLEE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++ DF+LWK S P EP WESPWG GRPGWHIECSAM+S LG FDIHGGG DL+ Sbjct: 173 ASVKRSGMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSSILGDHFDIHGGGSDLM 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA N W+H+G + ++ KMSKS GNF TI ++L Sbjct: 233 FPHHENEIAQSCCAHDT-PYVNTWMHSGMVMVDREKMSKSLGNFFTIRDVLA-------H 284 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------TSTSKGIIDPAVL 352 + + +R ++ HYR ++++ + L +A L + T Sbjct: 285 YDSETVRYFLMSGHYRSQLNYSEENLNQARASLERLYTSLRGLDLSVTPAGGEEFVGRFS 344 Query: 353 SALYNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILGIE------VCK 398 +A+ +D NT A L ++ARE + L + A +LG+ + Sbjct: 345 TAMNDDFNTPEAYSVLFEMAREVNRLKTENLDTASKLGALMRELADVLGLLSQEPEAFLQ 404 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L++ R K +++AD R + + +LED G T W+ Sbjct: 405 GGSSNDDVAEIEALIKARNDARAAKDWAAADAARDAIAALNIVLED------GPEGTTWR 458 Query: 459 QK 460 +K Sbjct: 459 RK 460 >gi|295687961|ref|YP_003591654.1| cysteinyl-tRNA synthetase [Caulobacter segnis ATCC 21756] gi|295429864|gb|ADG09036.1| cysteinyl-tRNA synthetase [Caulobacter segnis ATCC 21756] Length = 463 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 192/481 (39%), Positives = 271/481 (56%), Gaps = 42/481 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KI++TL R+ +F DP + MYVCGPTVY++AHIGN RP++VFDVLYR+LR+ YG Sbjct: 1 MTLKIHDTLAREKRDFVPADPKRVTMYVCGPTVYNYAHIGNFRPVVVFDVLYRVLRHLYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E+ V Y RN+TD+DDKI ++A E I S+IT + + +D L L P + Sbjct: 61 EEAVVYARNVTDVDDKINKKAADEGVPI------SVITERYLAAYHEDADALGALRPDLE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI ++ +I ++ +G AY A ++FDT S +YG S R +DE G RV Sbjct: 115 PKATEHIDAILEMIGQLVDNGSAYAAEGHVLFDTQSFADYGQLSGRPLDEMIAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++PADF+LWK S EP WESPWG GRPGWHIECSAM LGK DIH GG+DL F Sbjct: 175 PYKRHPADFVLWKPSKENEPEWESPWGAGRPGWHIECSAMIDKALGKTIDIHAGGIDLTF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA + AN W+HNGFL++ G KMSKS GN I +ELL+T Sbjct: 235 PHHENEVAQSRCAHKTAVLANYWMHNGFLDMGGEKMSKSLGNVIIPHELLKTV------- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------DPAVLSA 354 P VIR A+L HYR+P+D+T + L +++ L + + V++A Sbjct: 288 PGEVIRWALLSAHYRQPLDWTPELLEQSKKSLDRLYGALRRAKDVPMDQAMEAPAEVIAA 347 Query: 355 LYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFNASAHILGIEV------CKE 399 L +DLNT A A ++ A +S + +LG + Sbjct: 348 LMDDLNTPLATSAFFEVSSLIEKAVTAGDSVAIAANKARLLEAGALLGFLQADPDSWFEG 407 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + + +E L+ +R+ K +++AD IR +L++ G ++ D G W+ Sbjct: 408 DASDELKAKVEDLLAQRVAARAAKDWTAADAIRAELDALGVVVMD------GPSGATWRM 461 Query: 460 K 460 K Sbjct: 462 K 462 >gi|332359270|gb|EGJ37091.1| cysteine--tRNA ligase [Streptococcus sanguinis SK49] Length = 447 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 242/465 (52%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I +++++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VVEFMADIIRFVEDLVDKGYAYESEGDVYFRVEKSRDYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +A L T G D Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSNQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKEAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + F++AD IR +L ++G L D K+ R Sbjct: 402 IERLIEERQAARANRDFATADRIRDELATQGIKLLDTKDGVRWTR 446 >gi|209542601|ref|YP_002274830.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|209530278|gb|ACI50215.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 453 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 197/468 (42%), Positives = 268/468 (57%), Gaps = 32/468 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++ ++++ RK F +DP N+R+Y CGPTVYD AHIGN R M+ D+L RLLR+ Y Sbjct: 6 PQLTLHDSRSRKTVPFAPLDPGNVRVYYCGPTVYDLAHIGNLRAMVTADILVRLLRHLY- 64 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKI RAR + I +T++ + F +D + L P + Sbjct: 65 -PRVTYVRNITDVDDKINTRARAN------GETIDSLTARTIRDFHEDLDAVGILPPDIE 117 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT+HI +M+ LI +I GHAYEA ++F S P YG+ S R ++ G RV Sbjct: 118 PRATHHIAEMLTLIGQLIDSGHAYEAQGHVLFAVSRFPAYGALSGRSPEDLLAGARVEVA 177 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK S P PGWESPWGRGRPGWHIECSAMS YLG+ FDIHGGG DL+F Sbjct: 178 PYKRDPGDFVLWKPSAPDLPGWESPWGRGRPGWHIECSAMSHRYLGESFDIHGGGSDLLF 237 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C + AN W+HN L + G KMSKS GNF+T+ + L Sbjct: 238 PHHENELAQSQCCFPHGRFANHWVHNAMLLVNGEKMSKSLGNFLTVRDALSVS------- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----IIDPAVLSALYN 357 PA +RL +L YR ++FT+ L +A+ L+++ + + VL+AL + Sbjct: 291 PAEALRLLLLHAQYRSVLNFTLAGLEDAKQTLNRFYRAVGDTPPDGTVPVPAPVLAALCD 350 Query: 358 DLNTVSAIQALHKLA-RESTKNHDLLPIFNASAHILGIEVCKEHLNKNIS-----IAIEK 411 DLNT A+ +H LA R + D A+ +LG+ E IE+ Sbjct: 351 DLNTPRALAEMHALADRALAGDRDAALGLRAAGQLLGLLGQTEDAWFRAGTYVHPETIER 410 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 L+ ER K + F+ AD IR+ L G +LED G T W++ Sbjct: 411 LIVERQDARKSRDFARADAIRESLAKDGIVLED------GPSGTTWRR 452 >gi|313891890|ref|ZP_07825492.1| cysteine--tRNA ligase [Dialister microaerophilus UPII 345-E] gi|313119665|gb|EFR42855.1| cysteine--tRNA ligase [Dialister microaerophilus UPII 345-E] Length = 481 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 245/500 (49%), Gaps = 64/500 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IK+YNTL+R+ + I+ +++YVCG T Y+ HIGNARP + +D++ R L Y Sbjct: 2 EEIKVYNTLKREKQILKPIEEGKVKIYVCGVTPYNHPHIGNARPAVTWDIIRRYLEYIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V +++N TD+DDKII +A E ++++ + K L Sbjct: 62 --HVDFIQNFTDVDDKIINKANAEKSDW------KTVSTRYIDAYFKVMDALHIRRADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P + H+ +I +++ +I GHAY N++ +D S+ +Y S RK+++ G RV Sbjct: 114 PYVSKHMGDIIDMVKTLIEKGHAYVLGNDVYYDISTFKDYCKLSGRKVEDMLAGARVMVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK + P EP WESPWG GRPGWHIECS MS+HYLG FD HGGG DLIF Sbjct: 174 TAKRNPGDFALWKGAKPGEPFWESPWGNGRPGWHIECSVMSTHYLGATFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + W+HNGF+ + KMSKS NF + ++LE + Sbjct: 234 PHHENEIAQSEGATGQK-FVKYWLHNGFITINSEKMSKSLNNFFLVKDVLE-------KY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID-------------- 348 +R +L THYR P+DF+ +RL EAE +SK ++ Sbjct: 286 SGDALRYFLLSTHYRSPLDFSDERLEEAEKNMSKLKDVIARIKEMEKEDGKVETNESVSL 345 Query: 349 --------PAVLSALYNDLNTVSAIQALHKLARESTKNH---------------DLLPIF 385 A+ +D NT A L ++ + + F Sbjct: 346 KKAAARTIEEFRQAMNDDFNTGLATGVLFDFVKDINIYYNAVNSGVAIDKEAVIEAKETF 405 Query: 386 NASAHILGIE-----VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ILGI + + H + +E ++ R I K K++ AD IR +L G Sbjct: 406 KTILDILGILENEWNIQESHAGSDYDALMEMILSVREIARKEKQYKLADEIRDKLAELGI 465 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 +ED RWK++ Sbjct: 466 TVEDSAT------GARWKKR 479 >gi|58336686|ref|YP_193271.1| cysteinyl-tRNA synthetase [Lactobacillus acidophilus NCFM] gi|227903247|ref|ZP_04021052.1| cys-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] gi|81311530|sp|Q5FM34|SYC_LACAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58254003|gb|AAV42240.1| cys-tRNA synthetase cycrs [Lactobacillus acidophilus NCFM] gi|227869052|gb|EEJ76473.1| cys-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] Length = 477 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 171/495 (34%), Positives = 254/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRIYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYKGYQ- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E + + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEK------ITVPELAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEIKDIINFVKVLIDKGYAYEVDGDVYYRAKKFQHYGELSDQNIEQLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKGPDEIAWDSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS + N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTDQK-FVNYWMHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------- 342 R V+R M YR I+++ + L +A +L ++ T T Sbjct: 290 --RKIDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRIADDTPTKTS 347 Query: 343 -----SKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + ++A+ +D N +A+ +++ L A + D L +F Sbjct: 348 EDLVKAINETEEKFVAAMDDDFNVQNALTSIYDLLPVVNANANSDNVDKDALKLFEEKLA 407 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G+++ K + IE+LV +R K ++++D IR QL+ G ++D Sbjct: 408 AWLLVFGVDIKKLCAQTTGSNDEEIEELVSKRDEARNNKDWATSDQIRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|304309880|ref|YP_003809478.1| Cysteinyl-tRNA synthetase [gamma proteobacterium HdN1] gi|301795613|emb|CBL43812.1| Cysteinyl-tRNA synthetase [gamma proteobacterium HdN1] Length = 474 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 201/494 (40%), Positives = 275/494 (55%), Gaps = 58/494 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I ++NTL + F I P + MYVCGPTVY++ HIGNARP++VFD LYRLL+ +Y Sbjct: 1 MNIYLHNTLSGQKERFVPISPDRVTMYVCGPTVYNYVHIGNARPVVVFDTLYRLLKRHYP 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y RNITD+DDKI + A + I ++S+ + D L L P + Sbjct: 61 E--VRYARNITDVDDKINKAASDN------RETICELSSRYADAYRSDMQALFNLTPQFE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT++I MI +I +I GHAYEA ++F+ S+ P+YG S+R +D+ G RV Sbjct: 113 PRATDNIGAMIEIITTLIEKGHAYEAEGHVLFNVSTDPHYGCLSKRNLDDMIAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KKNPADF+LWK S+ PGW+SPWGRGRPGWHIEC+AM + +LGK DIH GGLDL+F Sbjct: 173 PYKKNPADFVLWKPSSDDLPGWDSPWGRGRPGWHIECTAMINAHLGKTIDIHAGGLDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ CA + E+ N W+HNG+L ++G KMSKS GNF T++ELL + W Sbjct: 233 PHHENEIAQGTCAHQDERYVNYWLHNGYLTIDGEKMSKSLGNFATVHELL-------QHW 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA-------- 354 P V+R A+L HYR P+D++ LT+A L + A A Sbjct: 286 PGEVLRYALLSAHYRSPLDWSDDALTQARASLDRLYGALRGHTPSSCADTHATAPDALQH 345 Query: 355 ---------LYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIEVCKE 399 L +DL T A+ LH+LA E+ ++ D L + ++ +G+ Sbjct: 346 PLLDTLEQHLADDLATPQALAVLHQLAGEANRSSDTPSRTQLQAVLASAGERMGLLTQDP 405 Query: 400 H--------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 N AIE L+Q+R K K F+ +D IR L+++G LED Sbjct: 406 ESWFKWQAPAARDATGNGLDDAAIEDLIQQRRDARKAKNFARSDEIRDLLKAQGIELEDT 465 Query: 446 KNPDNGQRMTRWKQ 459 + TRW + Sbjct: 466 R------EGTRWTR 473 >gi|19704900|ref|NP_602395.1| cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22257049|sp|Q8RIK9|SYC_FUSNN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|19712793|gb|AAL93694.1| Cysteinyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 473 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 267/492 (54%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V YV+N TD+DDK+I +A E N +I I + + + +DT+++ +P Sbjct: 61 -VNYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKINLKEEGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +IQ+++ G+AYE+N ++ F+ + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIQSLVDKGYAYESNGDVYFEVKKYRDGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENEMAQSKCGCGG-TFAKYWMHNGYININGEKMSKSSGSFVLLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L +HYR+P++F+ L + + L + T +D Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENTLKRIKELDRENIKGIDDCQELL 345 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------------ 389 + A+ D NT A+ + +L + K D I Sbjct: 346 ATKKEMEAKFIEAMNEDFNTAQALGHIFELVKAVNKTLDEANISKKGLEVIDEVYSYLVM 405 Query: 390 ---HILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVQLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|329666764|gb|AEB92712.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026] Length = 470 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 170/493 (34%), Positives = 250/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 1 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH + + + + F++DT L T PR Sbjct: 60 -VNYVSNFTDVDDKMINEARKEHT------TVEKLAERYIKAFMEDTEALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + + + PNYG S + I E + G Sbjct: 113 ATHEIKEIIDFVQDLIDKGFAYEVDGNVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 172 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 287 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLDDENERLED 344 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFN 386 + A+ +D N +A+ ++ LA + + Sbjct: 345 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLATTLNNHLQKDQVDKPALKRAKKLLI 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ +E IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 405 AWLEIFGVSFKEEQAEN--DDEIEKLIAQRDEARKNKDWAESDRLRDELQAKGIVIEDT- 461 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 462 -----PQGTRWHR 469 >gi|283852945|ref|ZP_06370204.1| cysteinyl-tRNA synthetase [Desulfovibrio sp. FW1012B] gi|283571635|gb|EFC19636.1| cysteinyl-tRNA synthetase [Desulfovibrio sp. FW1012B] Length = 485 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 174/499 (34%), Positives = 245/499 (49%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ R F + P + MYVCG T YD HIG+AR +VFDVL R LR+ E Sbjct: 1 MQLFNTMARGKEPFVSRLPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHLGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII++A E + I + F +D RL L +PR Sbjct: 60 -VTFVRNFTDVDDKIIKKANSEGA------TSAEIAERYIAAFYEDMDRLGILRADAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT +I +M + +I +GHAY + ++ F S YG S R +++ + G RV Sbjct: 113 ATEYIAEMADMAARLIENGHAYRTPSGDVYFRVRSFDGYGKLSGRDVEDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK S P EP W+SP+G GRPGWH+ECS MS LG DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKASKPGEPVWDSPFGPGRPGWHLECSVMSEKLLGIPIDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A + W+HNGF+ + KMSKS GNF+TI + E + Sbjct: 233 HHENEIAQSEAATGSD-FCRFWVHNGFVRINTEKMSKSLGNFVTIRTIYER-------YL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW----------------------PQTS 341 V+R ++ +HYR P+D++ Q L EAE + + P+ Sbjct: 285 PEVLRFFLVSSHYRSPLDYSDQALDEAEKGIKRIYAAKGQMEQALTRAKWSETKLPPEIG 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 ++ A+ +DLNT AI + L R + + D +L Sbjct: 345 QELNKLEEGFTGAMDDDLNTAQAIGHVFGLVRLAGRVLDDKTLAKSREAAEALGRILADL 404 Query: 386 NASAHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRK 433 + + ILG+ E E + + ++ LV ER K K F+ +D IR Sbjct: 405 DTWSGILGVFGRDSREFLAELKASRLARLGIDAARVDGLVAERQEARKTKDFARSDAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L G + D Sbjct: 465 ELAGLGVTVMDTPAGPQWD 483 >gi|254411359|ref|ZP_05025136.1| cysteinyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] gi|196181860|gb|EDX76847.1| cysteinyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] Length = 482 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 64/501 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F I+ +RMY CG T YD+ H+G+AR I++D R L++ Sbjct: 1 MTLTLYNTLTRRKEPFSPIEAGKVRMYCCGITAYDYCHLGHARTCIIWDTARRYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV+N TDIDDKI+ RARQE ++ ++ + Q + +D RL Sbjct: 61 D--VNYVQNFTDIDDKILNRARQE------GTSMEAVSERFIQAYFEDMARLNVDEADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + LI ++ +AY A ++ + YG S RK+++ + G Sbjct: 113 PRATHCLDGIKRLIYDLEQKNYAYPAAGDVYYAVRRFGEYGKLSGRKLEDLQAGASGRVE 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E KK+ DF LWK S P EP WESPWG GRPGWHIECSAM LG DIH G Sbjct: 173 VADAEAGKKKDAFDFALWKGSKPGEPAWESPWGAGRPGWHIECSAMIRDNLGDTVDIHAG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL+FPHHENEIAQS + A W+H G + + G KMSKS GNFITI +LL+ Sbjct: 233 GSDLVFPHHENEIAQSEAVTG-QPLARYWLHTGMVIVNGEKMSKSLGNFITIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQT 340 R+ +RL +L YR+P+DFT + L A W + Sbjct: 289 ---RATDPMAVRLFVLQAQYRKPLDFTDEALAAATNGWHTLKDGLLFGDQYGEQLGWQDS 345 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL-----------------P 383 + + +A+ +D N + L +LA++ + ++L Sbjct: 346 DKRQTAVLERFQAAVDDDFNFAEGLAVLFELAKDLGREGNILVHEGKTRTSPQELEAQWQ 405 Query: 384 IFNASAHILGIEVCKEHLNKN-----ISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 A + G+EV E +++ IE L+Q+R K K F +D IR +L+++ Sbjct: 406 TLVELAQVFGLEVQGEEISQESTSGLSDAEIEALIQQRSSARKRKDFEMSDRIRDELKAQ 465 Query: 439 GFILEDYKNPDNGQRMTRWKQ 459 G L D +TRW + Sbjct: 466 GITLIDQSGG-----VTRWHR 481 >gi|193211882|ref|YP_001997835.1| cysteinyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] gi|193085359|gb|ACF10635.1| cysteinyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] Length = 488 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 165/500 (33%), Positives = 244/500 (48%), Gaps = 54/500 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IYN+L RK F+ I P +YVCGPTVY AH+G+A+ + FDV+ R LR+ Sbjct: 1 MPSSLHIYNSLTRKKEPFEPIQPGLATIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRHV 60 Query: 61 Y--GEKCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114 V YV+NITD+ DD + + + + T+ F +D RL Sbjct: 61 GEQQGYKVRYVQNITDVGHLTDDADEGEDKIQKQARQERIEPMEVAQFYTRSFYEDMDRL 120 Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR-KIDEQ 173 P P AT HIP+ I L++ ++ GHAYE+N + FD +S YG S R + Sbjct: 121 GVERPNIAPTATGHIPEQIALVERLVETGHAYESNGNVYFDVNSFAGYGKLSGRTDQEAL 180 Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 + G RV E+ K+NP+DF LWK++ P W+SPWG G PGWH+ECSAM+ YLG D Sbjct: 181 QSGGRVAERSDKRNPSDFALWKKAEPSHIMKWQSPWGEGYPGWHLECSAMAMKYLGDTID 240 Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 IHGGG++ FPHH+ EIAQS A + W+HN + ++G KM KS NF+ + EL Sbjct: 241 IHGGGMENKFPHHDCEIAQSEAATG-KPFVRYWMHNNMVTVDGVKMGKSLKNFVNLKELF 299 Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKG 345 T + VIR +L +HYR P+DF+ + ++ K +T + KG Sbjct: 300 GT-------FDPLVIRFFILQSHYRSPLDFSEAAIKASQSGFEKLQETYKRLVESAEDKG 352 Query: 346 IIDPA-----VLSALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNAS 388 ++ A + AL +D NT AI L + + D + + Sbjct: 353 QLEVATFEQKITDALNDDFNTPVAIAVLFEFIKALNGALDKGGLDAASKAAALALLATYA 412 Query: 389 AHILGIEVCKEHL--------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 +LGI + L + + ++ L++ R K F+++D IR L +G Sbjct: 413 GEVLGILKSRNELLAGESGESAQTLDDVMQVLLELRKEARANKDFATSDKIRDLLMERGI 472 Query: 441 ILEDYKNPDNGQRMTRWKQK 460 ++D K W +K Sbjct: 473 EVKDTK------EGATWTKK 486 >gi|325689003|gb|EGD31011.1| cysteine--tRNA ligase [Streptococcus sanguinis SK115] Length = 447 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPKEVADKYIAAFREDVTTLGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I ++ ++ G+AYE+ ++ F +Y + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSRDYAKLANKTLADLELGASGRTNEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +A L T G D Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSNQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|134045577|ref|YP_001097063.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C5] gi|132663202|gb|ABO34848.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis C5] Length = 476 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 168/480 (35%), Positives = 239/480 (49%), Gaps = 54/480 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + ++MYVCGPTVYD H G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRKEEEFKPLTEKEVKMYVCGPTVYDHTHFGHGRTYVSFDIIRRYLEHIGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA ++ + ++ + F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRANEKGKN------PQELSEQFINVFLNDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HIP++I I+ +I G AY+ N + F+ NYG S +++ G R+ Sbjct: 114 VTEHIPEIIAFIEKLIEKGFAYKTENGVYFEVKKFENYGKLSNINLEDLYSGVRIETSEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF LWK + P EP WESP+G GRPGWHIECSAMSS YLGK FDIHGGG DL FPH Sbjct: 174 KKNPEDFALWKTAKPREPKWESPFGEGRPGWHIECSAMSSKYLGKQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNF+TI ++ + + Sbjct: 234 HENEIAQSVAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFVTIEDI-------SKEYDP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 ++R + HYR PID+T + +T + L K + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMTHVKNNLEKIYNVIENIRISLEKSKKSGAWGENEFLL 345 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI------------FNAS 388 A+ +D NTV A++++ +++ K L+ F Sbjct: 346 YDILKNSKHNFYEAMNSDFNTVEALKSVFEVSNGVNKYLSLVETPSEGLLLKAFDFFKIV 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ K N I+ L++ R L K + +D IR L++ G+++ED Sbjct: 406 GEIFGLFENYFKTSSESNDEEFIKFLIELRSDLRLQKNYEMSDKIRDGLKNIGYLIEDNP 465 >gi|254302121|ref|ZP_04969479.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322313|gb|EDK87563.1| cysteine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 473 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 178/492 (36%), Positives = 271/492 (55%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ + + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPLKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT+++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANIE------NVSIKEIAERYIKAYFEDTSKINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT +I +MI +I++++ G+AYE+N ++ F+ + YG S++ I++ + G R+ Sbjct: 114 KATENINEMIEIIKSLVDKGYAYESNGDVYFEVKKYRDGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKASKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G+KMSKS+G+FI + ++L + + Sbjct: 234 PHHENEMAQSKCGCGG-TFARYWMHNGYININGQKMSKSSGSFILLRDIL-------KHF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------------ 350 VIRL +L +HYR+P++F+ L + + L + T +D Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENTLKRIKELDRENLKGTDDCQDLL 345 Query: 351 ---------VLSALYNDLNTVSAIQALHKLARESTKNHDL-------LPIFNA------- 387 + A+ D NT A+ + +L + K D L + N Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHIFELVKAVNKTLDEVNISEKGLEVINEVYSYLVM 405 Query: 388 -SAHILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E +N + IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIQDVLGVQLKLEVEVNNISADLIELILELRRNAREEKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|15900500|ref|NP_345104.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] gi|111657664|ref|ZP_01408394.1| hypothetical protein SpneT_02001141 [Streptococcus pneumoniae TIGR4] gi|149005703|ref|ZP_01829442.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|149021553|ref|ZP_01835608.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|168490519|ref|ZP_02714662.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] gi|168576506|ref|ZP_02722380.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|225858428|ref|YP_002739938.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 70585] gi|225860592|ref|YP_002742101.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|298230928|ref|ZP_06964609.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254670|ref|ZP_06978256.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502386|ref|YP_003724326.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A] gi|307126794|ref|YP_003878825.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] gi|21264019|sp|Q97S25|SYC_STRPN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|14972066|gb|AAK74744.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] gi|147762643|gb|EDK69603.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|147930249|gb|EDK81234.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|183575011|gb|EDT95539.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] gi|183577730|gb|EDT98258.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|225720814|gb|ACO16668.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 70585] gi|225728330|gb|ACO24181.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|298237981|gb|ADI69112.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A] gi|306483856|gb|ADM90725.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] gi|327390330|gb|EGE88671.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA04375] gi|332077024|gb|EGI87486.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA17545] Length = 447 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|320547739|ref|ZP_08042023.1| cysteine--tRNA ligase [Streptococcus equinus ATCC 9812] gi|320447499|gb|EFW88258.1| cysteine--tRNA ligase [Streptococcus equinus ATCC 9812] Length = 448 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 247/470 (52%), Gaps = 39/470 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKIY+T+ R + EF I + + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 1 MTIKIYDTMTRSLREFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYCGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+ N TD+DDKII+ A + + K F++D L T Sbjct: 61 K--VNYISNFTDVDDKIIKGAAE------AGMDTKAFSDKFIAAFMEDVKELGVEPATKN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---V 179 PR ++ ++I +++++ G AYEAN ++ F + NY + + +++ ++G Sbjct: 113 PRVIEYMDEIIAFVKDLVDKGFAYEANGDVYFRVAKSKNYAKLANKTLEDLEVGASGRVD 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K+NP DF LWK + P E W+SPWG+GRPGWHIECS M++ LG DIHGGG D Sbjct: 173 GEGDIKENPLDFALWKSAKPGEVSWQSPWGQGRPGWHIECSVMATSILGDTIDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 233 LEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV---- 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP 349 V+R + YR+P++FT + + +A + L T + Sbjct: 288 ---DGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPVGEVADAAELAKFKD 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNIS 406 +A+ +D NT + I + +A+ + + F + GI +E L+ + Sbjct: 345 DFETAMDDDFNTANGITVIFDMAKWINSGNYDQTVKDTFAKMLAVFGIVFEEEVLDAD-- 402 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +E L+ +R + F++AD IR QL +G L D K+ G R TR Sbjct: 403 --VEALIAKRQEARANRDFATADAIRDQLAVQGIKLLDTKD---GVRWTR 447 >gi|90021548|ref|YP_527375.1| cysteinyl-tRNA synthetase [Saccharophagus degradans 2-40] gi|109894935|sp|Q21JG6|SYC_SACD2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|89951148|gb|ABD81163.1| cysteinyl-tRNA synthetase [Saccharophagus degradans 2-40] Length = 459 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 193/479 (40%), Positives = 271/479 (56%), Gaps = 43/479 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNT RK F ++P +I+MYVCGPTVY+ HIGNARP++VFDVL+R+L+ Y Sbjct: 1 MSLTVYNTRTRKKEPFVPVNPQSIKMYVCGPTVYNLVHIGNARPVVVFDVLFRVLKTLYP 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y RNITDIDDKI++ A++ ++IS +T++ T+ +++D L L P+ Sbjct: 61 E--VVYARNITDIDDKIMKAAKEN------GESISALTARFTEAYIEDMAALHNLPPSIA 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT HI MI ++ ++ GHAYEA+ ++FD S+ NYG S R +++ G RV Sbjct: 113 PKATAHIEPMIAMVAALVEKGHAYEADGHVLFDVQSMKNYGKLSNRALEDMLDGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K+ DF+LWK S EPGW SPWGRGRPGWH+ECSAM +LG DIHGGG DLIF Sbjct: 173 DYKRYAGDFVLWKPSADDEPGWASPWGRGRPGWHLECSAMIETHLGNTIDIHGGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA E+ W+HNG++N++G KMSKS GNF T+ +LL + + Sbjct: 233 PHHENELAQSECAHGGEEYVRYWMHNGYVNIDGEKMSKSLGNFRTVRDLL-------QQY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPAVLSA 354 IR A+L YR +DF+V L +++ L + + + D A A Sbjct: 286 HGETIRFALLSAQYRSELDFSVSLLDQSKAGLDTLYGALKNAPATSTDAVDLSDNAGYLA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILG--------------IEVCKEH 400 L +DLNT I LH+LA+ KN A+ + Sbjct: 346 LLDDLNTPQVIAELHRLAKIVNKNEGQEAAIAAAQLQALGGLLGLLQQEPEAWFKATTSG 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ + IE+L+ ER K ++ AD IRK+L KG LED + T WK+ Sbjct: 406 SSELSAEDIEQLIVERKDAKLAKNYARADEIRKELTEKGIALEDSAS------GTSWKR 458 >gi|288904445|ref|YP_003429666.1| cysteinyl-tRNA synthetase [Streptococcus gallolyticus UCN34] gi|325977441|ref|YP_004287157.1| cysteinyl-tRNA synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731170|emb|CBI12718.1| cysteinyl-tRNA synthetase [Streptococcus gallolyticus UCN34] gi|325177369|emb|CBZ47413.1| cysS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 448 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 163/470 (34%), Positives = 248/470 (52%), Gaps = 39/470 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 1 MTIKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+ N TD+DDKII+ A + + K F++D +L T Sbjct: 61 K--VNYISNFTDVDDKIIKGAAE------AGMDTKAFSDKFIAAFMEDVKQLGVKPATKN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---V 179 PR +++ ++I ++ ++ G AYEAN ++ F + NY + + + + ++G Sbjct: 113 PRVIDYMDEIIDFVKVLVDKGFAYEANGDVYFRVAKSQNYAKLANKTLADLEVGASGRVD 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K+NP DF LWK + P E W+SPWG GRPGWHIECS M++ LG DIHGGG D Sbjct: 173 GEGEIKENPLDFALWKSAHPGEVSWQSPWGEGRPGWHIECSVMATTILGDTIDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L Sbjct: 233 LEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDML------- 284 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP 349 ++ V+R + YR+P++FT + + +A + L T + Sbjct: 285 KNVDGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLTEEADAAELAKFKA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNIS 406 +A+ +D NT + I + +A+ N + F + GI +E L+ + Sbjct: 345 DFEAAMDDDFNTANGITVIFDMAKWINSGNYNQAVKDTFAKMLAVFGIVFEEEVLDAD-- 402 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+++R K F++AD IR QL ++G L D K+ G R TR Sbjct: 403 --IEALIEKRQAARANKDFATADAIRDQLAAQGIKLLDTKD---GVRWTR 447 >gi|121605784|ref|YP_983113.1| cysteinyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] gi|187629840|sp|A1VRB4|SYC_POLNA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120594753|gb|ABM38192.1| cysteinyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] Length = 463 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 252/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R + +F + P +RMYVCG T+YD HIG+AR M+ FDV+ R L+ Sbjct: 1 MSLRIYNTLSRAVEDFSPLVPGQVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YVRNITDIDDKII+RA + I +T + +D L PT + Sbjct: 61 E--VRYVRNITDIDDKIIKRA------VERGITIRALTDEMIAAMHQDIGALGIEPPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + G AY ++ ++ + P YG S + +DE + G RV Sbjct: 113 PRATEYVPQMLAMIGKLEEKGLAYRGSSGDMNYAVRKFPGYGKLSGKSLDELRAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEP---GWES-----PWGRGRPGWHIECSAMSSHYLGKVFDI 233 K +P DF+LWK + EP W+S +G+GRPGWHIECSAMS LG+ FDI Sbjct: 173 LEGKDDPLDFVLWKSAKESEPEDAKWDSAALGHDYGKGRPGWHIECSAMSCQTLGETFDI 232 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE 293 HGGG DL FPHHENEIAQS A+ + A W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 233 HGGGADLQFPHHENEIAQSEGANG-KPLARFWVHNGFVRVDNEKMSKSLGNFFTIRDVL- 290 Query: 294 TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----IIDP 349 + + A IR ++ HYR ++++ L +A L + ID Sbjct: 291 ------QKYDAETIRFFIIRAHYRSALNYSDAHLDDARNSLKRLYTALALVAPATVEIDW 344 Query: 350 A------VLSALYNDLNTVSAIQALHKLARESTKNHDL--LPIFNASAHILGIEVCK--- 398 A +A+ D T AI L +LA E K H + + LG+ + Sbjct: 345 ADPFAARFKAAMDEDFGTPEAIAVLFELAGEVNKTHSAERAGLLKSLGACLGLLQGEPSA 404 Query: 399 --EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 + AI+ L+ +R K + F++AD IR +L +G +L+D T Sbjct: 405 YLQAGAGLDDAAIQALITQRADAKKARDFAAADRIRTELLGQGIVLKDS------PLGTT 458 Query: 457 WKQK 460 W+ + Sbjct: 459 WEVQ 462 >gi|187928101|ref|YP_001898588.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12J] gi|229558781|sp|B2U9P8|SYC_RALPJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|187724991|gb|ACD26156.1| cysteinyl-tRNA synthetase [Ralstonia pickettii 12J] Length = 463 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 181/482 (37%), Positives = 262/482 (54%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + +S +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETMSALTGRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGRLQTNGLAYQATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG+ FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N+W+HNGF+ + KMSKS GNF TI ++L Sbjct: 234 DLQFPHHENEIAQSEGATG-KTFVNMWMHNGFVRVNDEKMSKSLGNFFTIRDVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + + A V+R +L +HYR ++++ L +A L++ A Sbjct: 287 -KVYDAEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAVGAKPDWSESH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNH--DLLPIFNASAHILGIEVCKEH----- 400 L A+ +D NT A+ L +LA E K +L A A ++G+ H Sbjct: 346 GKRFLEAMNDDFNTPVAVSVLFELASEVNKTRSPELASQLAALAGVIGLLGRDPHVFLQG 405 Query: 401 ---LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +E ++ER + F+ AD IR L + G +LED +T W Sbjct: 406 GVSADGVDAAEVEARIEERRAAKAARDFARADAIRADLLAAGIVLEDKPGG-----LTEW 460 Query: 458 KQ 459 ++ Sbjct: 461 RR 462 >gi|312865434|ref|ZP_07725661.1| cysteine--tRNA ligase [Streptococcus downei F0415] gi|311098952|gb|EFQ57169.1| cysteine--tRNA ligase [Streptococcus downei F0415] Length = 447 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 165/465 (35%), Positives = 245/465 (52%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLHEGQVNMYVCGPTVYNYIHIGNARSSVAFDTIRRYFEYAGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ + + + +K F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAAKE------ADMSPKDLAAKFIAAFMEDTKALGIKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + Q+I +Q ++ G AYEA ++ F NY + + + + + ++G E Sbjct: 114 VMDFMDQIIDFVQVLMDKGFAYEAGGDVYFRVQKSHNYAALANKTLADLEVGASGRTDSE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TELKEDPLDFALWKSAKLGEISWDSPWGAGRPGWHIECSVMSTTILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------SKGIID---PAV 351 V+R + HYR+PI+FT + + +A+ L T T + +D Sbjct: 287 -DGQVLRFFLATQHYRKPINFTDKAIHDAKANLKYLKNTYTLPLDEQSDQADLDKFLADF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I + LA+ H + F + GI +E L+ Sbjct: 346 KTAMDDDFNAANGITVIFDLAKWINSGHYNQAIKDAFAKMLEVFGIVFQEESLDS----E 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+++R K F++AD IR L ++G L D K+ R Sbjct: 402 IEALIKKRQAARAAKDFATADKIRDDLAAQGIKLLDTKDGVRWTR 446 >gi|307274057|ref|ZP_07555267.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0855] gi|306509365|gb|EFM78425.1| cysteinyl-tRNA synthetase [Enterococcus faecalis TX0855] Length = 478 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 169/492 (34%), Positives = 249/492 (50%), Gaps = 56/492 (11%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K IKIYNTL R+ F I+ +RMYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 7 KGMIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRG 66 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YV N TD+DDKII+ A++ + + + + F +DT L T Sbjct: 67 YE--VNYVSNFTDVDDKIIKAAKE------LKITAPEVAERFIKAFEEDTQALNVQPATL 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP- 180 PR +H+P ++ I +I G AYE ++ + T PNYG S + IDE ++G Sbjct: 119 HPRVMDHMPDILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRT 178 Query: 181 --EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 E+ K++P DF LWK + E W+SPWG+GRPGWHIECS M++ +LG+ DIHGGG Sbjct: 179 GVEQQLKEDPLDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQ 238 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKK 296 DL FPHHENEIAQS AN W+HNG++ + + KMSKS GNFIT++E++ Sbjct: 239 DLEFPHHENEIAQSEAKTG-HTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMI---- 293 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 + ++R M T YR PI ++ L EA K Sbjct: 294 ---QKVDPQILRFFMSTTQYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLP 350 Query: 341 -----STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----PIFNASAHI 391 ++ ++ + +D N + I +++LA+ + + P+ A + Sbjct: 351 EDEHYLAQLNELEQRFITEMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKL 410 Query: 392 ----LGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 L I + + ++ L++ER K + F+ +D IR L+ +G +LED Sbjct: 411 FSGWLAIFCLFFKNEELVDAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDT-- 468 Query: 448 PDNGQRMTRWKQ 459 + TRW++ Sbjct: 469 ----PQGTRWRR 476 >gi|71904305|ref|YP_281108.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] gi|109894951|sp|Q48RA7|SYC_STRPM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71803400|gb|AAX72753.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] Length = 447 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 239/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F+ AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFAIADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|256848164|ref|ZP_05553608.1| cysteinyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256715224|gb|EEU30201.1| cysteinyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 469 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 163/492 (33%), Positives = 254/492 (51%), Gaps = 60/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R EF + P + MYVCGPTVY++ HIGNAR I FD + R L + Sbjct: 2 LKIYNTLTRTKEEFHPVHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFIGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ AR++ + + K + F++DTT + T PR Sbjct: 60 HVNYVSNFTDVDDKMIKAAREQ------EITVPELADKYIRAFLEDTTAVNIEPATMHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT++IP++I IQ +I G+AY + ++ + +YG S + ID+ ++G Sbjct: 114 ATDNIPEIIKFIQRLIQRGYAYAVDGDVYYRARKFKHYGQLSGQSIDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K +P DF LWK + P E W+SPWG GRPGWHIECS MS+ YL DIH GG DL Sbjct: 174 EVNKKADPMDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTKYLADTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A +K N W+HNGF+ + + KMSKS NF+T+++++ Sbjct: 234 EFPHHENEIAQSEAATG-KKFVNYWMHNGFVTIGKDNEKMSKSLHNFVTVHDII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 + V+R M T YR PI ++ L +A+ L+ Sbjct: 287 -KHVDPQVLRFFMATTQYRRPIQYSEDNLVDAQNNLAHIQTAFNNLEYRKNDATDGDDTT 345 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 + + + A+ +D+N + I +++L + + + + + + Sbjct: 346 VANQLATFRSSFIEAMDDDINVQNGIAVVYELVKFANRYTEKETVAKDAIGNIQKLLKEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+++ + I++L+ +R + K F+ +D IR L+++G I+ED Sbjct: 406 LLIFGVKLT--ATGQIDDETIKQLIAKRDEARRQKNFALSDQIRDDLKAQGIIIEDT--- 460 Query: 449 DNGQRMTRWKQK 460 + TR++++ Sbjct: 461 ---PQGTRYRKE 469 >gi|328944848|gb|EGG39008.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1087] Length = 447 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 167/465 (35%), Positives = 241/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLREFVPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D + L T PR Sbjct: 61 -VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R HYR+PI+FT + + +A L T G D Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSDQLQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAEVKVAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L+ ER + F++AD IR +L ++G L D K+ R Sbjct: 402 IERLIDERQEARANRDFATADRIRDELAAQGIKLLDTKDGVRWTR 446 >gi|229074151|ref|ZP_04207197.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock4-18] gi|228708921|gb|EEL61048.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock4-18] Length = 449 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 167/472 (35%), Positives = 244/472 (51%), Gaps = 57/472 (12%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y E V YV N TD+DDK+ Sbjct: 2 PLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYE--VQYVSNFTDVDDKL 59 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 I+ A + + + + I + + + +D T L C T PR T ++ +I IQ + Sbjct: 60 IKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQEL 113 Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 + G+AYE+ ++ F T YG S + I + + G R+ K++P DF LWK + Sbjct: 114 VNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKE 173 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + Sbjct: 174 GEIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-K 232 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A W+HNG++N++ KMSKS GNFI +++++ + + +IR ML HYR P Sbjct: 233 TFARYWMHNGYINIDNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHP 285 Query: 320 IDFTVQRLTEAEILLSKWPQT---------------------STSKGIIDPAVLSALYND 358 I+F+ + L L + A A+ +D Sbjct: 286 INFSEELLQSTNNGLERIKTAYGNLKHRMESSANLTDHNEKWLAEMEKFQAAFEEAMDDD 345 Query: 359 LNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISI 407 NT +AI L+ +A + + + ILG+E+ KE L + Sbjct: 346 FNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDILGLELAKEEL---LDE 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+Q+R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 403 EIEALIQKRIEARKNRDFALSDQIRDDLKERNIILEDT------AQGTRWKR 448 >gi|324989717|gb|EGC21660.1| cysteine--tRNA ligase [Streptococcus sanguinis SK353] Length = 447 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 242/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + F I + MYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 IKIYDTMTRSLRNFVPITEKTVNMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDKIINRAKEE------GITPKEVADKYIAAFREDVTALGVKPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLVDLELGASGRTDDE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ + F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGNYTAQVKEAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQAARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|193214317|ref|YP_001995516.1| cysteinyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] gi|193087794|gb|ACF13069.1| cysteinyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] Length = 489 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 169/496 (34%), Positives = 243/496 (48%), Gaps = 60/496 (12%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 + ++IYNTL RK F+ + + +YVCGPTVY +H+G+A+ + FDV+ R LR Sbjct: 8 ISMSLQIYNTLTRKKEIFEPLVDGRVSLYVCGPTVYGHSHLGHAKSYVSFDVVARWLRQL 67 Query: 61 YGEKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 + V YV+NITD+ DDKII +A++EH + + F D Sbjct: 68 GYK--VKYVQNITDVGHLTDDADEGDDKIIAQAKREH------IDPMEVAQFYARSFFAD 119 Query: 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR-K 169 L P P AT HIP+ I LI+ +I HAYE N + FD +S YG S R Sbjct: 120 MDALGNQRPNISPTATGHIPEQIALIEQLIEKNHAYEVNGNVYFDVASFEGYGKLSGRIN 179 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLG 228 +E + G RV + K++PADF LWK++ P W SPWG G PGWHIECSAMS YLG Sbjct: 180 QEELEAGARVEVRSEKRHPADFALWKKAEPNHLMKWASPWGVGYPGWHIECSAMSMKYLG 239 Query: 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITI 288 + FDIHGGGL+ FPHH+ EIAQS CA + W+HN + + G+KM KS GN I++ Sbjct: 240 ETFDIHGGGLENQFPHHDCEIAQSECATG-KPFVRYWMHNNMVTVNGQKMGKSLGNSISL 298 Query: 289 NELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII- 347 ++ + +P VIR +L +HYR +DF+ + A+ L K +++ Sbjct: 299 KDIF-------KKFPPVVIRFFILQSHYRSTLDFSDAAIEAAQTGLKKLQESAARLNEAQ 351 Query: 348 -----------DPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIF 385 + A+ +D N AI L LARE + F Sbjct: 352 AGKTDLDLAPYEQRFTDAMNDDFNAPMAIAVLFDLAREINSALAADGLSATSLENAKAFF 411 Query: 386 NASA-HILGIE--------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 A +LGI + + + + +++ R K K F++AD IR L Sbjct: 412 ETYANGVLGILSTAGESDAAGSDKDKERLEGVMALVLELRQAARKNKDFATADKIRDGLT 471 Query: 437 SKGFILEDYKNPDNGQ 452 G ++D K+ + Sbjct: 472 GIGIEVKDTKDGAIWK 487 >gi|256852089|ref|ZP_05557476.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260661341|ref|ZP_05862254.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|282934881|ref|ZP_06340113.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] gi|297205036|ref|ZP_06922432.1| cysteine--tRNA ligase [Lactobacillus jensenii JV-V16] gi|256615501|gb|EEU20691.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260547796|gb|EEX23773.1| cysteinyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|281301062|gb|EFA93374.1| cysteine--tRNA ligase [Lactobacillus jensenii 208-1] gi|297149614|gb|EFH29911.1| cysteine--tRNA ligase [Lactobacillus jensenii JV-V16] Length = 473 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 249/494 (50%), Gaps = 61/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 1 MKIYNTLTRQKEEFKPLVPGKVSMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGFD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E + + + F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAE------GITVPELAKRYINAFMEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY- 183 AT I +I I+++I G AYE + ++ + YG S + I + G Sbjct: 113 ATEEIKDIIAFIKDLIEKGFAYEVDGDVYYRAKKFNGYGKLSDQDIASLEEGASEHVNEA 172 Query: 184 ---HKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K++P DF LWK+ E WESPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EFAKKEDPIDFALWKKQKQSDEIAWESPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKDEEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR+PI+++ + L +A I+L K T Sbjct: 287 --KRVDPQVLRFFMASVQYRKPINYSEENLKQAAIILDKIKNTVLNVQDKLQDTDSQENK 344 Query: 341 --STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNA 387 + + + A+ +D N +A+ ++ L KN L Sbjct: 345 ALAVAIEDSENRFKEAMDDDFNVQNALSVVYDLLPIINKNISESTSDLSNLKQFLQHLEN 404 Query: 388 SAHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 I G+++ K K + IE+LV++R K K F+++D IR QL + +L+D Sbjct: 405 WMAIFGVDIHKLTAEKVSDDDSEIEELVKKRDEARKHKDFATSDAIRDQLAAMNIVLQDT 464 Query: 446 KNPDNGQRMTRWKQ 459 + T+W++ Sbjct: 465 ------PKGTKWRR 472 >gi|284919700|emb|CAX65477.1| hypothetical protein [Enterobacter hormaechei] Length = 480 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 180/479 (37%), Positives = 252/479 (52%), Gaps = 47/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + + S I MYVCG TVYD H+G+AR + FD++ R LR+ + Sbjct: 22 IKLTNTLGMQKELLVPVKESKIGMYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYD- 80 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RAR + +T + + D +L L P +PR Sbjct: 81 -VTFVRNITDIDDKIIQRARD------TGEDWRSLTERMVHEMHIDFAKLGILPPNIEPR 133 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIPQ+I +I+ ++ AY A N +++F T+S YG S + I + GTR+ Sbjct: 134 PTEHIPQIISMIERLLHRQFAYIAENGDVMFSTASAKGYGKLSGQDITMLRAGTRIEVNE 193 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWKR+ P EP W SPWG GRPGWHIECSAM+ HYLG FDIHGGG DLIFP Sbjct: 194 YKRDPLDFVLWKRAKPGEPVWPSPWGEGRPGWHIECSAMNCHYLGTHFDIHGGGSDLIFP 253 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H G + + KMSKS NF T+ ++L + Sbjct: 254 HHENEIAQSTSANDG-PYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDILNR-------FD 305 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPAVLSAL 355 A +R +L HYR+P++++ + + A L++ S A+ Sbjct: 306 AQSVRFFLLSAHYRKPLNYSEENIHLARASLTRLYTACQFADGSRSEQHDAWRARFCEAM 365 Query: 356 YNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNIS 406 +D NT A+ L +L RE + L ++LG +E + KN S Sbjct: 366 DDDFNTPQALAILFELTREINRLCGTNDDEAAALATTLKDLGNVLGLLEQSADAFLKNRS 425 Query: 407 I-------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IEKL+ +R +M K+ AD +R +L +G LED T W+ Sbjct: 426 DLHPAELQLIEKLIHQRSEARRMGKWDKADRLRNELAEQGIDLEDV------GENTSWR 478 >gi|323126489|gb|ADX23786.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 447 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 240/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPLTEKTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYAGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q + ++ + F++DT L T PR Sbjct: 60 RVNYISNFTDVDDKIIKAAAQ------AGVSPKELSDRFIAAFMEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G AYE ++ F +Y + + + E ++G E Sbjct: 114 VMDYMTEIISFVQVLIEKGFAYEVAGDVYFRVEKSEHYAQLANKTLSELEVGASGRTDVE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TSLKENPLDFALWKSAKTGEVSWDSPWGSGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AEI L T A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETANEQELKRFVTAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L+ + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGFYTGMVKEAFEKILAVFGIVFEEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIAKRQEARTNRDFATADAIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|227894572|ref|ZP_04012377.1| cys-tRNA synthetase [Lactobacillus ultunensis DSM 16047] gi|227863731|gb|EEJ71152.1| cys-tRNA synthetase [Lactobacillus ultunensis DSM 16047] Length = 477 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 174/495 (35%), Positives = 256/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYK- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINEIINFVKVLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST--------------- 342 + V+R M YR I+++ + L +A +L ++ T T Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNIDYRLDDNTASEKS 347 Query: 343 -----SKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + D ++A+ +D N +A+ A++ L A + D L F Sbjct: 348 SELVKAIEDTDQKFIAAMDDDFNVQNALTAVYDLLSVVNANANSKKADKDALKQFEEKLT 407 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A I G++ K + IE LV++R K ++++D +R QL+ G ++D Sbjct: 408 AWLLIFGVDTNKLCAQNTGSNDDEIEALVKKRDEARANKDWATSDQLRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|251781692|ref|YP_002995994.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390321|dbj|BAH80780.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 447 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 240/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF + + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPLTEKTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYAGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A Q + ++ + F++DT L T PR Sbjct: 60 RVNYISNFTDVDDKIIKAAAQ------AGVSPKELSDRFIAAFMEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G AYE ++ F +Y + + + E ++G E Sbjct: 114 VMDYMTEIISFVQVLIGKGFAYEVAGDVYFRVEKSEHYAQLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TSLKENPLDFALWKSAKTGEVSWDSPWGSGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AEI L T A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETANEQELKRFVTAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD---LLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L+ + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTGMVKEAFEKILAVFGIVFEEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIAKRQEARTNRDFATADAIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|28377486|ref|NP_784378.1| cysteine--tRNA ligase [Lactobacillus plantarum WCFS1] gi|38258341|sp|Q88YX9|SYC_LACPL RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|28270318|emb|CAD63219.1| cysteine--tRNA ligase [Lactobacillus plantarum WCFS1] Length = 470 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 178/479 (37%), Positives = 257/479 (53%), Gaps = 51/479 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++NTL R+ F+ I P ++MYVCGPTVY++ HIGNAR I FD + R Y Sbjct: 2 LSVFNTLTRQKEPFKPITPGVVKMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYCGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+RA ++H ++P + + + F++DTT + T PR Sbjct: 60 HVDYVSNFTDVDDKLIKRAAEDHTTVP------AVADRFIKAFMEDTTAVNIEPATVHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 A+ +IP++I +Q +I G+AYE+ ++ + YG S ++ID+ ++G Sbjct: 114 ASENIPEIIAFVQALIEKGYAYESAGDVYYRARKFKKYGQLSDQRIDDLEVGASQHTADE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E WESPWG GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETDRKEDPIDFALWKAAKPGEISWESPWGAGRPGWHIECSVMSTKYLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + AN W+HNGF+ + + KMSKS GNF+T++++++T Sbjct: 234 EFPHHENEIAQSEAKTG-KTFANYWLHNGFVTVGDDNEKMSKSLGNFVTVHDIIKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIIDPA 350 V+R M T YR PI +T L EA L K + D A Sbjct: 290 ----DPQVLRFFMATTQYRRPIQYTQANLDEAANNLDKLRNAYRNLTFRLQDATNGTDTA 345 Query: 351 VLS-----------ALYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHI 391 V A+ +D N + + A+++LA+ + + L+ + A + Sbjct: 346 VAEQLQTLITNFGTAMDDDFNVQNGVAAVYELAKLANVYAAKATVQKETLIALQKALVQL 405 Query: 392 LGI-EVCKEHLNKNI-SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 G+ V E N + AI+ L+ ER K K F+ AD IR L+ +G +LED Sbjct: 406 TGVFGVTFETANATLADDAIQALIDEREAARKAKDFAKADQIRDDLKVQGIMLEDTPQG 464 >gi|328958761|ref|YP_004376147.1| cysteine--tRNA ligase [Carnobacterium sp. 17-4] gi|328675085|gb|AEB31131.1| cysteine--tRNA ligase [Carnobacterium sp. 17-4] Length = 468 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 165/491 (33%), Positives = 245/491 (49%), Gaps = 61/491 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF I+ ++MYVCGPTVY++ HIGNAR + FD + R L Y + Sbjct: 2 LKIYNTLTREKEEFVPIEEGKVKMYVCGPTVYNYIHIGNARSTVAFDTVRRYLEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A++ ++ + + K + + +DT L TH PR Sbjct: 61 -VAYISNFTDVDDKIIRTAKE------LDLSAQEVADKFIEAYHEDTHALGVEKATHHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 ++P+++ I +I G+AYE ++ + T +YG S IDE ++G V Sbjct: 114 VMENMPEIVDFIAVLINKGYAYEVEGDVYYRTRKFKDYGKLSDISIDELEVGASNRLTVQ 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E WESPWG GRPGWHIECS M++ YLG DIH GG DL Sbjct: 174 ENNKKEDPLDFALWKSAKAEEISWESPWGAGRPGWHIECSVMATKYLGDTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A+ W+HNGF+ ++ KMSKS GN + +++++ + Sbjct: 234 TFPHHENEIAQSEAKTG-HPFAHYWMHNGFVTMDNEKMSKSIGNVVLVHDII-------K 285 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------------- 344 ++R M T YR PI + + EA LSK + Sbjct: 286 QVDPQIVRFFMATTQYRRPISYNETTIEEARANLSKIKTAYDNAMYRLKDAVETETDDQE 345 Query: 345 -----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 + + +D N+ + I ++++A+ + +L F Sbjct: 346 QLNQFTSFKENFIKEMDDDFNSANGITVVYEMAKAMNIYSERSVVSKVVLEAMLDQFQEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I GI L + IE+L+++R K F +D IR QL+ +G IL+D Sbjct: 406 VQIFGIAFAATEL---LDETIEQLIEDRNAARAEKNFQRSDEIRDQLKEEGIILDDT--- 459 Query: 449 DNGQRMTRWKQ 459 + TRW++ Sbjct: 460 ---PQGTRWRR 467 >gi|182683526|ref|YP_001835273.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] gi|303253920|ref|ZP_07340041.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS455] gi|303260086|ref|ZP_07346059.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|303261270|ref|ZP_07347218.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|303263935|ref|ZP_07349856.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS397] gi|303265926|ref|ZP_07351822.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|303268308|ref|ZP_07354105.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|182628860|gb|ACB89808.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] gi|301801464|emb|CBW34156.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae INV200] gi|302599096|gb|EFL66121.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS455] gi|302637404|gb|EFL67891.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|302638781|gb|EFL69243.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|302642146|gb|EFL72496.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|302644510|gb|EFL74761.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|302646340|gb|EFL76566.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae BS397] Length = 447 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ + Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|166712436|ref|ZP_02243643.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 476 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 195/496 (39%), Positives = 268/496 (54%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFTPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDELPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------- 349 P +R A+L HYR+P+D++ + +A+ L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALEACGSSGVEVSKT 345 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNH-DLLPIFNASAHILGIEVCKEH----- 400 V SAL +DLNT A+ + +A E+ +L+ +SA + + + Sbjct: 346 IPVEVESALEDDLNTPLALSVIASIASEARALRNELVHAGESSARMSELHAVRAKLLGAG 405 Query: 401 -----------------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + I LVQER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFSRGTDAGDDARITALVQERSAAKKGKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|94991232|ref|YP_599332.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] gi|94544740|gb|ABF34788.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] Length = 447 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 160/465 (34%), Positives = 239/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AY A+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYAADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADVIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|254514497|ref|ZP_05126558.1| cysteinyl-tRNA synthetase [gamma proteobacterium NOR5-3] gi|219676740|gb|EED33105.1| cysteinyl-tRNA synthetase [gamma proteobacterium NOR5-3] Length = 462 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 202/479 (42%), Positives = 277/479 (57%), Gaps = 46/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNT R+ F +DP + MYVCGPTVY+ AHIGNARP++VFD L+RLL+ +Y Sbjct: 3 LQLYNTRARRKEAFDPVDPDCVTMYVCGPTVYNLAHIGNARPVVVFDTLFRLLQTHY--D 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RNITDIDDKI+ A+++ AI +I + Q++ +DT +L L PT +P Sbjct: 61 KVVYARNITDIDDKIMRAAQEQ------GVAIDVIAGEFAQKYREDTAQLNALPPTLEPH 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I MI L +++I HAY A ++FD +S+ +YG S R +D+ G RV + Sbjct: 115 ATDNIGPMIALTESLIERNHAYAAEGHVLFDVTSMKDYGQLSGRSLDDMLAGARVEVAGY 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S+ EPGWESPWGR RPGWH+ECSAM +LG DIHGGG DLIFPH Sbjct: 175 KRHPGDFVLWKPSSADEPGWESPWGRVRPGWHLECSAMIREHLGPTIDIHGGGRDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE+AQSCCA E +W+HN FL+++G KMSKS GN TI ELL + Sbjct: 235 HENELAQSCCAFGDE-FVRVWMHNAFLDMDGEKMSKSLGNVATIRELLTR-------YRG 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------PAVLSAL 355 V+R A+L HYR P++F+ L +AE L+ + T S I+ +AL Sbjct: 287 EVLRFALLSAHYRSPLNFSEALLEQAEQTLTSFYNTLRSVQGIELDCEVSLEGEGFYAAL 346 Query: 356 YNDLNTVSAIQALHKLARESTKNH-----DLLPIFNASAHILGIEVCKE----------H 400 +DLNT AI LH LAR+ K L A+ ++LGI Sbjct: 347 CDDLNTPLAISELHVLARDINKASGSDKPALKARLLAAGNLLGILQQDPLEWLQGDGASD 406 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 L + A+E L+ ER+ + ++ AD IR +L + G ILED T W++ Sbjct: 407 LQGLDAEAVEALIAERVAAKANRDYARADEIRDELTAGGIILEDS------AGGTLWRR 459 >gi|94995145|ref|YP_603243.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] gi|94548653|gb|ABF38699.1| Cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] Length = 447 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLHKFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL ++G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAAQGIKLLDTKDGVRWLR 446 >gi|58582301|ref|YP_201317.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624181|ref|YP_451553.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|81311823|sp|Q5GZD9|SYC_XANOR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894962|sp|Q2P2E8|SYC_XANOM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58426895|gb|AAW75932.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368121|dbj|BAE69279.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 476 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 193/496 (38%), Positives = 264/496 (53%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFTPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDELPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------- 349 P +R A+L HYR+P+D++ + +A L + T ++ Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQATNTLDRLYGTLRDLAALEACGSSGVEVSKT 345 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHDLL----PIFNASAHILGIEV------ 396 V SAL +DLNT A+ + +A E+ + L + + + Sbjct: 346 IPVEVESALQDDLNTPLALSVIASIASEARALRNELVHGGEPSARMSELHAVRAKLLGAG 405 Query: 397 -------------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + + I LVQER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFSRGTDADDDARITALVQERSAAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|166365576|ref|YP_001657849.1| cysteinyl-tRNA synthetase [Microcystis aeruginosa NIES-843] gi|189082070|sp|B0JJL5|SYC_MICAN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|166087949|dbj|BAG02657.1| cysteinyl-tRNA synthetase [Microcystis aeruginosa NIES-843] Length = 480 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 166/499 (33%), Positives = 253/499 (50%), Gaps = 62/499 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F + P + MY CG TVYD+ H+G+AR +V+DV+ R L Y Sbjct: 1 MTLILYNTLSRREEPFTPLIPGIVSMYCCGITVYDYCHLGHARTCVVWDVVRRYLEYLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y++N TDIDDKI+ RA+ EH ++ + + + + +D +L Sbjct: 61 K--VRYIQNFTDIDDKILNRAKNEHT------TMAAVAERFIEAYFEDMAKLGVRPADAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMG------ 176 PRAT+ + + L+ + G+AY ++ ++ + +YG S RK+D+ + G Sbjct: 113 PRATHTLDGIKRLVYELEQKGYAYPSDGDVYYSVRRFSDYGKLSGRKLDDLQAGASGRVE 172 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 T PE K++P DF LWK + EP W+SPWG+GRPGWHIECSAM LG+ DIH G Sbjct: 173 TDDPEAIKKQDPFDFALWKGAKSGEPSWDSPWGQGRPGWHIECSAMVKEQLGETIDIHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS A + A+ W+HNG + + G KMSKS GNFITI ELL Sbjct: 233 GSDLIFPHHENEIAQSEAATG-KPLAHYWLHNGMVKVAGEKMSKSLGNFITIRELLA--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------------STS 343 + +RL +L YR+PIDF+ + L A + + + Sbjct: 289 ----KYDPLAVRLLILGAQYRKPIDFSDEGLQAATNGWHTLQEGLSFGYKHLPPDNPAIT 344 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------------IFN 386 ++ A+ +D N + L ++A+E K + L Sbjct: 345 DQELENRFQEAVNHDFNFAGGLAVLFEIAKELRKEGNNLTHAGKTDSNLAQLAVKWHTLV 404 Query: 387 ASAHILGIEVCKEHLNKNIS-----IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + +LG+E+ + +S IE L+Q+R K K ++ +D IR +L+++G Sbjct: 405 KLSRVLGLEMAADQGETPVSEGISAADIENLIQQRTEAKKAKNYAESDRIRAELKAQGIT 464 Query: 442 LEDYKNPDNGQRMTRWKQK 460 L D +T+W ++ Sbjct: 465 LIDQPGG-----VTKWLRE 478 >gi|291459364|ref|ZP_06598754.1| cysteine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417963|gb|EFE91682.1| cysteine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 469 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 177/486 (36%), Positives = 249/486 (51%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYNT+ + EF+ I+ IRMYVCGPTVY+ HIGNARPMIVFD R + Y Sbjct: 1 MRIYNTMSGRKEEFKPIEEGKIRMYVCGPTVYNLIHIGNARPMIVFDTFRRYMEYRGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 YV N TD+DDKII++A +E + IT + + KD L + PR Sbjct: 59 RFNYVSNYTDVDDKIIQKANEE------GTSCQRITERYIGEVEKDMKALNIEPASAHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VP 180 AT I MI LI ++ G+AY ++ + ++T + NYG S + IDE + G R V Sbjct: 113 ATEEISGMISLIAELVEKGYAYASDDGTVYYNTKAFRNYGELSHKNIDELQSGLRELKVS 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++PADF+LWK EP W SPW GRPGWH EC M+ Y G DIH GG DL Sbjct: 173 GEEKKRSPADFVLWKPKKEGEPYWNSPWSEGRPGWHTECCVMAPKYCGGRLDIHAGGEDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ A E+ AN W+HN F+N++ +KMSKS GNF+T+ +++ + Sbjct: 233 IFPHHENEIAQYEAAHG-ERFANYWMHNAFINIDHKKMSKSLGNFLTVRDVI-------K 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------D 348 W V+R ML HYR P++F+ + + A+ L + + + Sbjct: 285 RWDPMVLRFYMLSAHYRNPLNFSAELMDSAKQSLERILTAVQRLRELSGRLSGEELLPGE 344 Query: 349 PAVLSA-----------LYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNA 387 V A + +DLNT AI A+ +L R + + +L Sbjct: 345 EKVREAAEEQRRNFNERMDDDLNTADAITAVFELVRIANSSVSEQSSAAICRYMLDTIVT 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 +LGI E + + +E+L++ER + K F AD IR +L S G L+D + Sbjct: 405 LLSVLGIRT--ERKEEKLDREVEELIEERQKAREKKDFKRADEIRDRLLSMGISLKDTRE 462 Query: 448 PDNGQR 453 R Sbjct: 463 GVKWSR 468 >gi|313635089|gb|EFS01438.1| cysteinyl-tRNA synthetase [Listeria seeligeri FSL N1-067] Length = 471 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 253/490 (51%), Gaps = 57/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I+I+NTL+R+ F+ + ++MYVCGPTVY++ HIGNARP+IVFD + R Y + Sbjct: 3 IQIFNTLKREKEPFKPLRDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I+ A + ++P + + + D +L + PR Sbjct: 62 -VKFVSNFTDVDDKLIKAANELKLTVP------EVADRFIGAYFDDVDQLNVAKASVNPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ ++I LI +I G+AYE+ ++ F T +YG S + + E + G RV Sbjct: 115 VTENMDEIIQLINTLIEKGYAYESAGDVYFRTKKFEDYGKLSGQALSELQHGARVEYNER 174 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF LWK + P E WESP+G GRPGWHIECSA++ YLG DIH GG DLIFPH Sbjct: 175 KQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLIFPH 234 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HE+EIAQS A + AN W+HN FLN++G KMSKS GNFIT++++L + Sbjct: 235 HEDEIAQSEAATG-KTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVL-------KDNDP 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW------------------------PQT 340 VIR ML HYR+PI L +A+ L + + Sbjct: 287 NVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHQDEW 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNASA 389 + A + +D NT +AI H+LA+ + + L + A Sbjct: 347 LEQLTELKHAFEEDMDDDFNTANAITTFHELAKRANIYLSKEVVSVNVLREFLSMMRLFA 406 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 +LG+++ +E L++ERL + F+ AD IR L+ K ILE Sbjct: 407 EVLGLKLEYTQTESLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILE------ 460 Query: 450 NGQRMTRWKQ 459 + TR+++ Sbjct: 461 XXXQGTRFRR 470 >gi|242280816|ref|YP_002992945.1| cysteinyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] gi|259511828|sp|C6BS23|SYC_DESAD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|242123710|gb|ACS81406.1| cysteinyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] Length = 485 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 174/498 (34%), Positives = 244/498 (48%), Gaps = 67/498 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF ++ + + +Y CG T YD HIG+AR +VFD+L R LR+ + Sbjct: 1 MRLYNTLNRKKEEFVPLNGNKVNLYACGITAYDLCHIGHARSSVVFDILVRYLRFKGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TDIDDKII RA + + + K +F D +L L +P+ Sbjct: 60 -VTFVRNFTDIDDKIINRANE------TGVTSTELAEKFIGEFYVDMDKLNILRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP+MI L Q +I HAY + ++ F S +YG S R I++ + G R+ Sbjct: 113 CTEHIPEMIELTQTLIEKDHAYATPSGDVYFKVRSFDDYGKLSGRNIEDLQSGARIQPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWH+ECSAMS Y FDIHGGG DL FP Sbjct: 173 EKQDPLDFALWKAAKPGEPSWESPWGQGRPGWHLECSAMSEKYFELPFDIHGGGQDLSFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E A W+HNGF+ + KMSKS GNF TI ++L+ + Sbjct: 233 HHENEIAQSEAATGKE-MARFWVHNGFVQINSEKMSKSLGNFFTIRDILD-------KFM 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------------QTS 341 +R +L HYR P+DF+ + L EAE + + + Sbjct: 285 PETLRYFLLTMHYRSPLDFSFEALEEAEKGIRRVYSALEQTAEALNKSKWSKAALPEEVL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 + A+ +D+NT A+ + L R + + + +L Sbjct: 345 AEIEDAEKGWADAMEDDMNTAGAMGHMFTLIRLAGRIGEEKSWRKSEGGRDAWIRILEDM 404 Query: 386 NASAHILGI------EVCKE------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LGI E +E +E+LV R K K F+ +D IR Sbjct: 405 KKWGEVLGIFTRDPKEFLEELKLCMLERKGIEVAKVEELVAARQEARKNKDFARSDEIRD 464 Query: 434 QLESKGFILEDYKNPDNG 451 +L G ++D Sbjct: 465 ELIELGVEVKDTPQGAVW 482 >gi|15675744|ref|NP_269918.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71911468|ref|YP_283018.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] gi|21264023|sp|Q99XZ9|SYC_STRP1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|13622964|gb|AAK34639.1| putative cysteinyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71854250|gb|AAZ52273.1| cysteinyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] Length = 447 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 160/465 (34%), Positives = 239/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + + +YVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLRKFVPLTENTVNIYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYTGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ + F++DT L T PR Sbjct: 61 -VNYISNFTDVDDKIIKAA------TQAGVSPKELSDRFIAAFIEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 ++I ++I ++++I AYEA+ ++ F +Y + + + E ++G E Sbjct: 114 VMDYIAEIISFVESLIEKDFAYEADGDVYFRVEKSEHYAKLANKTLSELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEVSWDSPWGFGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+ ++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVTVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDP--------AV 351 V+R + YR+PI+FT + + +AEI L T D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKTIHDAEINLKYLKNTLQQPLTETADEQELKQFVIAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTEPVKSAFEKMLAVFGIIFEEEVL----EVD 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE L+ +R + F++AD IR QL +G L D K+ R Sbjct: 402 IEALIAKRQEARANRDFATADAIRDQLAVQGIKLLDTKDGVRWLR 446 >gi|148983973|ref|ZP_01817292.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|148992298|ref|ZP_01822021.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|149010789|ref|ZP_01832160.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] gi|168482827|ref|ZP_02707779.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] gi|168488279|ref|ZP_02712478.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|168492751|ref|ZP_02716894.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|221231418|ref|YP_002510570.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] gi|225854126|ref|YP_002735638.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae JJA] gi|225856294|ref|YP_002737805.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae P1031] gi|147765270|gb|EDK72199.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] gi|147924120|gb|EDK75232.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|147928924|gb|EDK79936.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|172043769|gb|EDT51815.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] gi|183573040|gb|EDT93568.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|183576856|gb|EDT97384.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|220673878|emb|CAR68383.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] gi|225723999|gb|ACO19852.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae JJA] gi|225725363|gb|ACO21215.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae P1031] gi|301799643|emb|CBW32201.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae OXC141] gi|332074402|gb|EGI84878.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA17570] gi|332203756|gb|EGJ17823.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA47368] Length = 447 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|225867828|ref|YP_002743776.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] gi|225701104|emb|CAW97948.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] Length = 447 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 165/471 (35%), Positives = 240/471 (50%), Gaps = 42/471 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPITDKVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYAGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ + + + F++DT L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAKE------AGLSPKQLADQFIAAFMEDTKALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I I +I G+AYE+ ++ F + NY + + I + + G E Sbjct: 114 VMDYMDEIIVFIAALIKKGYAYESAGDVYFRVAKAANYAKLANKTIADLEAGASGRTDTE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W SPW GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKENPLDFALWKSAKAGEIAWASPWSSGRPGWHIECSVMATELLGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 234 FPHHTNEIAQSEAKTG-KSFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 +R + HYR+PI+FT + + +A + L T ++ A Sbjct: 287 -DGQTLRFFLATQHYRKPINFTEKAIHDAGVNLKYLKNTLQQPTVATADASQLNAFITAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D NT + I L +A+ + + F + GI E L+ Sbjct: 346 KAAMNDDFNTANGITVLFDMAKWINSGAYSEAVKSAFEEMLAVFGIVFEAESLD----TE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE+L+ ER + F+ AD IR QL ++G L D K+ RW + Sbjct: 402 IEQLIAERQEARANRDFAKADAIRDQLAAQGIKLLDTKD------GVRWIR 446 >gi|148998267|ref|ZP_01825736.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] gi|147755910|gb|EDK62954.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] Length = 447 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 173/468 (36%), Positives = 242/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++ + + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMTKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|332202472|gb|EGJ16541.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae GA41317] Length = 447 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 173/468 (36%), Positives = 242/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TVRKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++ + + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMTKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|332359942|gb|EGJ37756.1| cysteine--tRNA ligase [Streptococcus sanguinis SK1056] Length = 450 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 169/469 (36%), Positives = 242/469 (51%), Gaps = 36/469 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + IKIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y Sbjct: 1 MDRMIKIYDTMTRSLREFMPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTVRRYFEYR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V Y+ N TD+DDKII RA++E + K F +D + L T Sbjct: 61 GFE--VNYISNFTDVDDKIIHRAKEE------GITPKEVADKYIAAFREDVSALGVKPAT 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR-- 178 PR + + +I ++ ++ G+AYE+ ++ F NY + + + + ++G Sbjct: 113 QHPRVIDFMEAIIDFVRTLVDKGYAYESEGDVYFRVEMSHNYAKLANKTLADLELGASGR 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG Sbjct: 173 TDEETARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 233 ADLEFPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT--- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA----- 350 V+R HYR+PI+FT + + +A L T G D A Sbjct: 289 ----IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLKAF 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKN 404 +A+ D N + I + +LA+ + F + GI +E L + Sbjct: 345 LDKFTTAMDEDFNAANGITVVFELAKWINSGNYTAQVKEAFAKLLEVFGIVFVEEVLEAD 404 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IE+L++ER + F++AD IR +L +G L D K+ R Sbjct: 405 ----IERLIEERQEARANRDFATADRIRDELADQGIKLLDTKDGVRWTR 449 >gi|148988955|ref|ZP_01820355.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] gi|147925452|gb|EDK76529.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] Length = 447 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 173/468 (36%), Positives = 243/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIENGKVKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|295694815|ref|YP_003588053.1| cysteinyl-tRNA synthetase [Bacillus tusciae DSM 2912] gi|295410417|gb|ADG04909.1| cysteinyl-tRNA synthetase [Bacillus tusciae DSM 2912] Length = 476 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 178/496 (35%), Positives = 252/496 (50%), Gaps = 60/496 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I+++NTL ++ F+ +P ++MY CGPTVYD+ HIGNAR +VFD++ Y Sbjct: 1 MPIRVFNTLTKRKEVFEPQEPGVVKMYCCGPTVYDYFHIGNARAFVVFDLVR--RYLRYR 58 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYV+N TD+DDKII RA +EH A+ + K + + +D L Q Sbjct: 59 GYRVTYVQNFTDVDDKIIRRAAEEH------MAVQDLAEKYIRAYFEDAAALGIEPADVQ 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ ++I +IQ ++ G AY ++ FDTS P+YG S + G RV Sbjct: 113 PRVTMHMHEIIDMIQALLDKGFAYRIQEDVYFDTSRDPDYGKLSGQDPAALMAGARVEVD 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK S P E W+SPWG+GRPGWHIECSAMS YLG DIH GG DLIF Sbjct: 173 ERKRHPLDFALWKGSKPGEVAWDSPWGKGRPGWHIECSAMSRTYLGDTLDIHAGGQDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C A W+HNG+L KMSKS GN +T+ ELL+ + Sbjct: 233 PHHENEIAQSECVTG-HPFARYWMHNGYLQWNRVKMSKSLGNVVTVRELLKRVR------ 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------------- 346 IRL +L HYR P++F+++ L +A+ L + + G Sbjct: 286 -PHAIRLYLLSAHYRHPLNFSLELLEQADRGLERIESSLRDLGDWLGPDSSLTGAVTEES 344 Query: 347 -------------IDPAVLSALYNDLNTVSAIQALHK---LARESTKNHDLLPI------ 384 I A+ +D NT A+ AL++ LA + + D+ Sbjct: 345 GHVPGLEVDEVQRIHEKWTEAMDDDFNTAEALGALYEGVGLANRAIREQDVTRAKAWQGW 404 Query: 385 FNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + A +G+ + ++ IE L+ R K + +++AD IR QL G +LED Sbjct: 405 LSYHARFMGLIADGQKESETEREKIEALIARRAEARKKRDWAAADRIRDQLSEMGIVLED 464 Query: 445 YKNPDNGQRMTRWKQK 460 RW+++ Sbjct: 465 T------PYGVRWRRR 474 >gi|168485706|ref|ZP_02710214.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] gi|183571202|gb|EDT91730.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] Length = 447 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 173/468 (36%), Positives = 245/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLRKFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F++AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFATADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|332708902|ref|ZP_08428873.1| cysteinyl-tRNA synthetase [Lyngbya majuscula 3L] gi|332352444|gb|EGJ32013.1| cysteinyl-tRNA synthetase [Lyngbya majuscula 3L] Length = 494 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 168/513 (32%), Positives = 242/513 (47%), Gaps = 76/513 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F+ ++ +RMY CG TVYD H+G+AR IV+D L++ Sbjct: 1 MTLNLYNTLTRRKESFEPLETGKVRMYCCGITVYDLCHLGHARTCIVWDTARHYLQWRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YV+N TDIDDKI+ RAR+E ++ ++ + + +D RL Sbjct: 61 D--VNYVQNFTDIDDKILNRARRE------GTSMEAVSERFIDAYFEDMARLNVQEANAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + L+ + G+AYEA+ ++ + YG S RK+++ + G Sbjct: 113 PRATHSLDGIKRLVCELEQKGYAYEADGDVYYSVRRFEEYGKLSGRKLEDLQAGASGRVD 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 KK+P DF +WK + P EP WESPWG GRPGWHIECSAM LG+ DIH G Sbjct: 173 VADSVGPKKKDPFDFAVWKSAKPEEPSWESPWGPGRPGWHIECSAMVRDMLGETIDIHTG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DL+FPHHENEIAQS + A W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 233 GSDLVFPHHENEIAQSEAVTG-KSLARYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 R +RL +LM YR+PIDFT + A + Sbjct: 289 ---RPVDPMAVRLFVLMAQYRKPIDFTDDAIASATNGWQTLKEGLLFGHNYGIQLGWQDQ 345 Query: 341 ------------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------ 382 S I A+ +DLN + L ++A+ + ++L Sbjct: 346 SATPKPSQPLQDDLSNKTIAQQFQEAVDDDLNFAGGLAVLFEVAKGLRREGNILVHQGKT 405 Query: 383 -----------PIFNASAHILGIEVCKEH-----LNKNISIAIEKLVQERLILLKMKKFS 426 A +LG+E E + IE L+Q+R K K F Sbjct: 406 ETPASELEQQWRSLVELAEVLGLEAQPEEEAEVSTDGLSDGEIEALIQQRAEARKTKNFE 465 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 +D IR L+++G L D G +T W + Sbjct: 466 LSDRIRDDLQAQGITLID-----QGGGVTTWHR 493 >gi|322411055|gb|EFY01963.1| cysteinyl-tRNA synthetase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 447 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 166/468 (35%), Positives = 242/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF + + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDTMTRSLREFVPLTENTVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYAGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A Q + ++ + F++DT L T PR Sbjct: 61 -VNYVSNFTDVDDKIIKAAAQ------AGVSPKELSDRFIAAFMEDTKALGVKPATQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G AYE ++ F +Y + + I E ++G E Sbjct: 114 VMDYMAEIISFVQVLISKGFAYEVAGDVYFRVEKSEHYAQLANKTISELEVGASGRTDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TSLKENPLDFALWKSAKTGEVSWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AE+ L T A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTDKAIRDAEVNLKYLKNTFQQPLTEKADEQELKRFVTAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD---LLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D NT + I + +A+ + F + GI +E L+ + Sbjct: 346 QDAMDDDFNTANGITVVFDMAKWINSGSYTGMVKESFEKILAVFGIIFEEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F +AD +R QL ++G L D K+ G R TR Sbjct: 402 IEALIAKRQEARTNRDFVTADALRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|237738879|ref|ZP_04569360.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 2_1_31] gi|229423982|gb|EEO39029.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 2_1_31] Length = 473 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 178/492 (36%), Positives = 270/492 (54%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ I + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPIKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT ++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANAE------NVSIKEIAERYIKAYFEDTAQINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT++I MI +I++++ G+AYE+N ++ F+ YG S++ I++ + G R+ Sbjct: 114 KATDNIDGMINIIKSLVDKGYAYESNGDVYFEVKKYKEGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKKDALDFALWKSSKPNEPSWDSPWGKGRPGWHIECSAMSRKYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENEMAQSKCGCGG-TFARYWMHNGYININGEKMSKSSGSFVLLRDIL-------KHF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 VIRL +L +HYR+P++F+ L + + L + + Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENSLKRIKELNRENLDGTNDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNA------- 387 +K ++ + A+ D NT A+ + +L + K D + + + Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHVFELVKSVNKALDEENFSKTAIEVLDEVYSYLVM 405 Query: 388 -SAHILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIEEVLGVKLKLEAEVNNISADLIELILELRKDAREQKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|326403598|ref|YP_004283680.1| cysteinyl-tRNA synthetase [Acidiphilium multivorum AIU301] gi|325050460|dbj|BAJ80798.1| cysteinyl-tRNA synthetase [Acidiphilium multivorum AIU301] Length = 449 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 200/467 (42%), Positives = 267/467 (57%), Gaps = 32/467 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK++NT R+ F DP+++++YVCGPTVYD AH+GNAR ++VFD L RLLR+ + Sbjct: 3 QIKLHNTKTRRREPFAPADPAHVKLYVCGPTVYDRAHLGNARTVVVFDTLVRLLRHLF-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKI RA + + I IT++ T F +D L C P +P Sbjct: 61 PRVTYVRNITDIDDKINARAAE------TGETIGEITARTTSWFHEDMAALYCAPPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +I LI+ +I GHAY A ++F ++ YG FS R +E G RV Sbjct: 115 RATGHIGDIIALIERLIARGHAYAAEGHVLFAVATDAEYGKFSGRSPEELLAGARVDVAT 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P PGW+SPWGRGRPGWHIECSAM LG+ DIHGGG DLIFP Sbjct: 175 YKRDPGDFVLWKPSPPDLPGWDSPWGRGRPGWHIECSAMIHATLGETIDIHGGGADLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + A +W+H G L + G+KMSKS GNF T+ ++L+ P Sbjct: 235 HHENEIAQSCCAFPGSEFARVWVHAGMLQVNGQKMSKSLGNFRTVQDVLDEA-------P 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------KGIIDPAVLSALYN 357 +R +L THYR +DF+ L EA+ L ++ + A + AL + Sbjct: 288 GEAVRFLLLKTHYRGVLDFSTAALAEAKRELDRFYRALEKHADPAPAATPPAAFIEALAD 347 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL-GIEV--CKEHL--NKNISIAIEKL 412 DLNT AI LH LA + + +A +L GI + I+ L Sbjct: 348 DLNTPGAIAELHALADAAMQGDAASAAGLRAAGMLIGIFNHTADQWFRGEATDDARIDAL 407 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + ERL + K F+ AD IR +L + G +LED G T W++ Sbjct: 408 IAERLAARRNKDFARADAIRAELAAAGILLED------GPGGTTWRR 448 >gi|146319578|ref|YP_001199290.1| cysteinyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|146321776|ref|YP_001201487.1| cysteinyl-tRNA synthetase [Streptococcus suis 98HAH33] gi|253752580|ref|YP_003025721.1| cysteinyl-tRNA synthetase [Streptococcus suis SC84] gi|253754406|ref|YP_003027547.1| cysteinyl-tRNA synthetase [Streptococcus suis P1/7] gi|253756340|ref|YP_003029480.1| cysteinyl-tRNA synthetase [Streptococcus suis BM407] gi|145690384|gb|ABP90890.1| Cysteinyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|145692582|gb|ABP93087.1| Cysteinyl-tRNA synthetase [Streptococcus suis 98HAH33] gi|251816869|emb|CAZ52516.1| cysteinyl-tRNA synthetase [Streptococcus suis SC84] gi|251818804|emb|CAZ56644.1| cysteinyl-tRNA synthetase [Streptococcus suis BM407] gi|251820652|emb|CAR47412.1| cysteinyl-tRNA synthetase [Streptococcus suis P1/7] gi|292559192|gb|ADE32193.1| Cysteinyl-tRNA synthetase [Streptococcus suis GZ1] Length = 447 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 248/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ HIGNAR ++ FD + R Y + Sbjct: 2 IKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTY+ N TD+DDKII+ A + ++ K F +D T+L T PR Sbjct: 61 -VTYISNFTDVDDKIIKAANE------AGMTTKELSDKFIAAFKEDVTKLGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G+AYEA ++ F + NY + + + + ++G E Sbjct: 114 VIDYMDEIIDFVQVLIDKGYAYEAAGDVYFRVEKVENYARLANKTLSDLEVGASGRVEGE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 GQLKEHPFDFALWKTAKSGEVSWGSPWGAGRPGWHIECSVMATEILGATIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS C + AN W+HN LN+ KMSKS GNF+T +++LE Sbjct: 234 FPHHTNEIAQSECKTG-QTFANYWMHNAMLNINDEKMSKSLGNFLTAHDMLE-------Q 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIID--------PAV 351 V+R + HYR P+++T + +++AEI L T T + +D A Sbjct: 286 IDGQVLRFFLATQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVDKSALELHLAAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D N + I A+ A+ + + F + GI +E L+ Sbjct: 346 EAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGKMLAVFGIVFEEEVLDS----E 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ ER + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IEALIAERQAARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|148260406|ref|YP_001234533.1| cysteinyl-tRNA synthetase [Acidiphilium cryptum JF-5] gi|187629816|sp|A5FYD2|SYC_ACICJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|146402087|gb|ABQ30614.1| cysteinyl-tRNA synthetase [Acidiphilium cryptum JF-5] Length = 449 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 200/467 (42%), Positives = 267/467 (57%), Gaps = 32/467 (6%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK++NT R+ F DP+++++YVCGPTVYD AH+GNAR ++VFD L RLLR+ + Sbjct: 3 QIKLHNTKTRRREPFAPADPAHVKLYVCGPTVYDRAHLGNARTVVVFDTLVRLLRHLF-- 60 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRNITDIDDKI RA + + I IT++ T F +D L C P +P Sbjct: 61 PRVTYVRNITDIDDKINARAAE------TGETIGEITARTTSWFHEDMAALYCAPPDIEP 114 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI +I LI+ +I GHAY A ++F ++ YG FS R +E G RV Sbjct: 115 RATGHIGDIIALIERLIARGHAYAAEGHVLFAVATDAEYGKFSGRSPEELLAGARVDVAT 174 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWK S P PGW+SPWGRGRPGWHIECSAM LG+ DIHGGG DLIFP Sbjct: 175 YKRDPGDFVLWKPSPPDLPGWDSPWGRGRPGWHIECSAMIHATLGETIDIHGGGADLIFP 234 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + A +W+H G L ++G+KMSKS GNF T+ ++L P Sbjct: 235 HHENEIAQSCCAFPGSEFARVWVHAGMLQVDGQKMSKSLGNFRTVQDVLGEA-------P 287 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS------KGIIDPAVLSALYN 357 +R +L THYR +DF+ L EA+ L ++ + A + AL + Sbjct: 288 GEAVRFLLLKTHYRGVLDFSTAALAEAKRELDRFYRALEKHADPAPAATPPAAFIEALAD 347 Query: 358 DLNTVSAIQALHKLARESTKNHDLLPIFNASAHIL-GIEV--CKEHL--NKNISIAIEKL 412 DLNT AI LH LA + + +A +L GI + I+ L Sbjct: 348 DLNTPGAIAELHALADAAMQGDAASAAGLRAAGMLIGIFNHTADQWFRGEATDDARIDAL 407 Query: 413 VQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + ERL + K F+ AD IR +L + G +LED G T W++ Sbjct: 408 IAERLAARRNKDFARADAIRAELAAAGILLED------GPGGTTWRR 448 >gi|71906558|ref|YP_284145.1| cysteinyl-tRNA synthetase [Dechloromonas aromatica RCB] gi|109894895|sp|Q47HK6|SYC_DECAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|71846179|gb|AAZ45675.1| cysteinyl-tRNA synthetase [Dechloromonas aromatica RCB] Length = 456 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 184/476 (38%), Positives = 266/476 (55%), Gaps = 43/476 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYN+L+R+ F I+P+ +RMYVCG TVYD+ H+G+AR M+VFD++YR L+ + Sbjct: 2 LKIYNSLKREKQVFTPIEPNKVRMYVCGMTVYDYCHLGHARVMVVFDMVYRWLKASGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA I + I +T++ +D L P ++PR Sbjct: 61 -VTYVRNITDIDDKIIKRA------IENGETIQQLTNRFIAFMHEDADALGVQRPDYEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++P+M+ LI + +G AY+A + ++ + P YG S + +D+ + G RV Sbjct: 114 ATEYVPEMLDLIGKLEANGLAYQASDGDVNYAVRKFPGYGKLSGKSLDDLRAGERVEVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF+LWK + P EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL FP Sbjct: 174 AKQDPLDFVLWKHAKPGEPAWQSPWGDGRPGWHIECSAMSSKLLGQHFDIHGGGQDLQFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+HNGF+ ++ KMSKS GNF TI +LE + Sbjct: 234 HHENEIAQSEGANCCN-FVNYWMHNGFVRVDNEKMSKSLGNFFTIRTVLE-------QFD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----QTSTSKGIIDP------AVLS 353 A V+R +L HYR P++++ L +A L + ID + Sbjct: 286 AEVVRFFILRAHYRSPLNYSDAHLDDARRSLDSLYFALRDVPPAAADIDWSNEFAGRFAA 345 Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGIEVCKEHL--------NK 403 AL D ++ AI L +LA E K+ L + ++G+ + Sbjct: 346 ALNEDFDSHGAIAVLFELAAEVNRQKSAGLSCLLKGLGGVIGLLEREPSAYLQGGAGVGG 405 Query: 404 NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 A+ +++ +R K K F+ AD IR +L++ G IL+D + T W++ Sbjct: 406 LDEAAVGQMIVDRAAAKKAKNFAEADRIRDELKAAGIILDDS------PQGTTWRR 455 >gi|227888795|ref|ZP_04006600.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] gi|227850632|gb|EEJ60718.1| cysteinyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] Length = 472 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 169/493 (34%), Positives = 249/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL RK EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRKKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A +EH + + + + F++DT L T PR Sbjct: 62 -VNYVSNFTDVDDKMINEAHKEHT------TVEKLAERYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIKEIIDFVQDLIDKGFAYEVDGDVYYRARKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 175 EQSKKEDPIDFALWKAQKEEDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQSEAKTG-RKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 289 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLNDENETLED 346 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFN 386 + A+ +D N +A+ ++ LA + + Sbjct: 347 NGLRDDLTQAKAEFIEAMDDDFNVQNALSIMYDLATTLNNHLQKDQVDKPALKRAKKLLI 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ +E IEKL+ +R K K ++ +D +R +L++KG ++ED Sbjct: 407 AWLEIFGVSFNEEQAEN--DDEIEKLIAQRDEARKNKDWAESDRLRAELQAKGIVIEDT- 463 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 464 -----PQGTRWHR 471 >gi|15902563|ref|NP_358113.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116517189|ref|YP_816017.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae D39] gi|30316153|sp|Q8DQS8|SYC_STRR6 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|15458093|gb|AAK99323.1| Cysteinyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116077765|gb|ABJ55485.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae D39] Length = 447 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIERGFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|304438773|ref|ZP_07398701.1| cysteine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372775|gb|EFM26353.1| cysteine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 461 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 174/485 (35%), Positives = 250/485 (51%), Gaps = 55/485 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R + EF + + MY CGPTVY+F H+GNARP+++FD L R + Y Sbjct: 1 MKLYNTLSRSLEEFVPVKEGQVNMYNCGPTVYNFIHVGNARPLVIFDTLRRY--FIYKGY 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDKII RA +EH + I+ + ++F KD L T P Sbjct: 59 DVNFVVNFTDIDDKIINRANEEHV------DFTEISERYIKEFKKDANGLHLYDYETINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT I +MI I+ + AY + ++ FD + +YG S++ IDE G R+ Sbjct: 113 RATEMIKEMIEFIKILESKDAAYVLDGDVYFDINKAKDYGKLSKKNIDELMAGARIGVAE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK+ EP WESPW GRPGWHIECS M+ LG DIH GG DL FP Sbjct: 173 GKRNPGDFVLWKKKKEGEPSWESPWSEGRPGWHIECSVMAKTILGDTIDIHSGGEDLQFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ + AN W+HNG +N++ KMSKS GNF TI E+ + + Sbjct: 233 HHENEIAQSETANG-KTFANYWLHNGMINVDNEKMSKSKGNFFTIREV-------SKEYD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDPA---- 350 V+R +L HYR PI+F+ + + + + L + + + G +D Sbjct: 285 LEVLRYFLLTCHYRSPINFSHEVMDQCKASLERMYNAKEKLEKLIENANAGSLDEEVKEL 344 Query: 351 -------VLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 A+ +D+NT A+ A+ + + D + N + +LGI Sbjct: 345 VDAEVKYFEDAMEDDINTADALTAIFNIVKIINTKVDDSSKETLEYVRDSLNKLSKVLGI 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 E + +S E L ERL K K ++ +D +R +L + G ++D + Sbjct: 405 L---ERKEEGLSPEEEALFYERLEARKNKDYAKSDELRDKLLAMGIEVKDSR------EG 455 Query: 455 TRWKQ 459 T WK+ Sbjct: 456 TTWKR 460 >gi|254429556|ref|ZP_05043263.1| cysteinyl-tRNA synthetase [Alcanivorax sp. DG881] gi|196195725|gb|EDX90684.1| cysteinyl-tRNA synthetase [Alcanivorax sp. DG881] Length = 460 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 208/482 (43%), Positives = 276/482 (57%), Gaps = 47/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ NTL K +F +DP I +YVCGPTVY+F HIGNARP++VFDVLYRLL+ Y Sbjct: 1 MTLRLQNTLTGKKDDFIPLDPDRITLYVCGPTVYNFVHIGNARPVVVFDVLYRLLQRLY- 59 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y RNITDIDDKII+ A + + IS++T + T F +D L P Sbjct: 60 -PNVVYARNITDIDDKIIKAAAEN------GEDISVLTERFTAAFAEDMASLNAKTPNII 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT+HIP+MI +I ++ GHAYEA+ +++F S+P+YG S RK+++ G RV Sbjct: 113 PKATDHIPEMIQMIATLVEKGHAYEADGQVLFAVESMPDYGKLSGRKLEDMLAGARVEVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DFILWK S+ +PGWESPWGRGRPGWHIECSAM +LG V DIHGGG DLIF Sbjct: 173 DYKRHPGDFILWKPSSDEQPGWESPWGRGRPGWHIECSAMIHKHLGDVIDIHGGGQDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ CCA + W+HNG++N++G KMSKS GNF + +LL + Sbjct: 233 PHHENEIAQGCCAHGTD-YVRYWLHNGYINIDGEKMSKSLGNFRLVRDLLT-------QY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-----------DPAV 351 ++R A+L +HYR P++F+ L AE L +G + V Sbjct: 285 HGEILRFALLSSHYRSPLNFSADVLDNAEKGLDTLYYALLGRGETVAPEADYQLPDNHPV 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVCKEHLNK 403 L AL +DLNT A+ ALH +A E K L +L ++ NK Sbjct: 345 LDALKDDLNTSEAVSALHAIAGELNKAELADKPTLKAELLAAADLLGLLTVDPTAWFQNK 404 Query: 404 NISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 N+S I+ LV ER K K F+ AD IR+QL G LED + TRW Sbjct: 405 NVSEDGLSNDDIDALVAERTQAKKDKNFARADEIRQQLTDAGIQLEDTR------EGTRW 458 Query: 458 KQ 459 + Sbjct: 459 SR 460 >gi|157145196|ref|YP_001452515.1| hypothetical protein CKO_00929 [Citrobacter koseri ATCC BAA-895] gi|157082401|gb|ABV12079.1| hypothetical protein CKO_00929 [Citrobacter koseri ATCC BAA-895] gi|204636645|gb|ACI01739.1| putative cysteinyl-tRNA synthetase class Ia [Escherichia coli] Length = 460 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 180/479 (37%), Positives = 252/479 (52%), Gaps = 47/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK+ NTL + + S I MYVCG TVYD H+G+AR + FD++ R LR+ + Sbjct: 2 IKLTNTLGMQKELLVPVKESKIGMYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITDIDDKII+RAR + +T + + D +L L P +PR Sbjct: 61 -VTFVRNITDIDDKIIQRARD------TGEDWRSLTERMVHEMHIDFAKLGILPPNIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIPQ+I +I+ ++ AY A N +++F T+S YG S + I + GTR+ Sbjct: 114 PTEHIPQIISMIERLLHRQFAYIAENGDVMFSTASAKGYGKLSGQDITMLRAGTRIEVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K++P DF+LWKR+ P EP W SPWG GRPGWHIECSAM+ HYLG FDIHGGG DLIFP Sbjct: 174 YKRDPLDFVLWKRAKPGEPVWPSPWGEGRPGWHIECSAMNCHYLGTHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A+ N W+H G + + KMSKS NF T+ ++L + Sbjct: 234 HHENEIAQSTSANDG-PYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDILNR-------FD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPAVLSAL 355 A +R +L HYR+P++++ + + A L++ S A+ Sbjct: 286 AQSVRFFLLSAHYRKPLNYSEENIHLARASLTRLYTACQFADGSRSEQHDAWRARFCEAM 345 Query: 356 YNDLNTVSAIQALHKLARESTK--------NHDLLPIFNASAHILG-IEVCKEHLNKNIS 406 +D NT A+ L +L RE + L ++LG +E + KN S Sbjct: 346 DDDFNTPQALAILFELTREINRLCGTNDDEAAALATTLKDLGNVLGLLEQSADAFLKNRS 405 Query: 407 I-------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IEKL+ +R +M K+ AD +R +L +G LED T W+ Sbjct: 406 DLHPAELQLIEKLIHQRSEARRMGKWDKADRLRNELAEQGIDLEDV------GENTSWR 458 >gi|188584813|ref|YP_001916358.1| cysteinyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349500|gb|ACB83770.1| cysteinyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 469 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 176/493 (35%), Positives = 262/493 (53%), Gaps = 59/493 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 MK IK++NT+++K EF + MYVCGPTVYD+ H+GNAR ++FDV+ R L Y Sbjct: 1 MKMSIKLFNTMKKKKEEFVPKQEGKVDMYVCGPTVYDYFHVGNARAFLIFDVVRRYLDYK 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 + VTYV+NITDI+DK+I RA ++ ++ + K T ++ D + Sbjct: 61 GYQ--VTYVQNITDIEDKMINRANED------GITVAELAEKYTSEYFDDARAIGIKDAD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H P+AT HI ++I +IQ+++ G+AY ++ FDT++ +YG R+ +E G RV Sbjct: 113 HHPKATEHIAEIIEIIQDLLDKGYAYRQGGDVYFDTAAFDDYGKLCRQDPEELVSGARVA 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KKNPADF+LWK EP W+SP+G+GRPGWHIECSAMS YL DIH GG DL Sbjct: 173 VDDRKKNPADFVLWKSKKEGEPAWDSPFGQGRPGWHIECSAMSMKYLDTPLDIHAGGSDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENE+AQS A + W+H G+L ++ RKMSKS GNF+T+ + + Sbjct: 233 VFPHHENEVAQSEAATGQD-FCKYWMHVGYLEIDNRKMSKSMGNFLTVRDFR-------Q 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDP- 349 + V+RL ++ HYR P++FT + + +A+ L + + S + + D Sbjct: 285 KYDPRVLRLFLMSAHYRSPLNFTDELIEQAKSSLDRLDNFYNNLKFYLEKSREQELTDKE 344 Query: 350 ------------AVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFN 386 +A+ +D NT SA+ + LA+E + + Sbjct: 345 QDIMEYLKQARTEFEAAMDDDFNTASALAVIFSLAKEINSYIGNGGENALVFKNTYDLLL 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 ++G+ ++ + IE+ +QER K K F AD IR +L +G ILED Sbjct: 405 EFDQVMGLLP---ETDEILPEEIEQKIQEREQARKQKDFQRADAIRDELRDRGIILEDT- 460 Query: 447 NPDNGQRMTRWKQ 459 RWK+ Sbjct: 461 -----PEGVRWKR 468 >gi|167648484|ref|YP_001686147.1| cysteinyl-tRNA synthetase [Caulobacter sp. K31] gi|189082061|sp|B0T101|SYC_CAUSK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|167350914|gb|ABZ73649.1| cysteinyl-tRNA synthetase [Caulobacter sp. K31] Length = 462 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 189/480 (39%), Positives = 273/480 (56%), Gaps = 41/480 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+Y+T+ R+ +F DP + MYVCGPTVY+ AHIGN RP++VFDVL+RLLR+ YG Sbjct: 1 MTLKLYDTMAREKRDFVPADPGRVTMYVCGPTVYNHAHIGNFRPVVVFDVLFRLLRHVYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y RN+TD+DDKI +A E I +IT + + +D L L P+ + Sbjct: 61 EDAVVYARNVTDVDDKINAKATAEGVEI------KVITDRYLAAYHEDAAALLTLPPSLE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P+AT H+ +I +I ++ +G AY A ++FDT + P+YG S R +D+ G RV Sbjct: 115 PKATEHMGPIIEMIGELVANGSAYAAEGHVLFDTQAFPDYGQLSGRDLDDMIAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++PADF+LWK S EP W+SPWG GRPGWHIECSAM LG+ DIHGGG+DL F Sbjct: 175 PYKRHPADFVLWKPSKENEPEWDSPWGAGRPGWHIECSAMIDKTLGQTIDIHGGGIDLAF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA AN W+HNGFL++ G KMSKS GN I +ELL+T Sbjct: 235 PHHENELAQSRCAHGAPVLANYWLHNGFLDMAGEKMSKSLGNVIIPHELLKTT------- 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP-------AVLSAL 355 P IR A+L HYR+P+D+T + + +++ L + ++ V++AL Sbjct: 288 PGEAIRWALLSGHYRQPLDWTPELIEQSKKALDRLYGALRRAKTVEAGESEPSDEVMAAL 347 Query: 356 YNDLNTVSAIQALHKLA----RESTKNHDLL-----PIFNASAHILGIEV------CKEH 400 +DLNT A+ +L+ R T +L ASA +LG + Sbjct: 348 SDDLNTPLAVSGFFELSSAIERAVTAGDELAITANKGRLLASAGLLGFLQADPDSWFEGD 407 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + ++ +E L+ R+ K +++AD IR ++++ G ++ D G W+ K Sbjct: 408 ADDDLKAKVEDLLARRIAARTAKDWTAADAIRAEIDALGVVVMD------GPAGATWRMK 461 >gi|260584970|ref|ZP_05852714.1| cysteine--tRNA ligase [Granulicatella elegans ATCC 700633] gi|260157400|gb|EEW92472.1| cysteine--tRNA ligase [Granulicatella elegans ATCC 700633] Length = 470 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 160/490 (32%), Positives = 246/490 (50%), Gaps = 57/490 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 I++YNTL R+ EF+ ++P ++MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IQVYNTLTRQKEEFKPLEPGIVKMYVCGPTVYNYIHIGNARSTVAFDTIRRYFEYRGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII+ A + ++ K + F +DT L T P Sbjct: 61 -VNYVSNFTDVDDKIIKAANE------TGMTPEEVSKKYIEAFYEDTAALNVKKATLNPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 N + +I ++ ++ AYE+ ++ F T +YG S + I + ++G Sbjct: 114 VMNTMDDIIAFVEALVEKEAAYESGGDVYFITEKFKDYGKLSDQSIQDLQVGASQRTESA 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K+NP DF LWK + P E W+SPWG+GRPGWHIECS M++ +LG DIHGGG DL Sbjct: 174 DDAKKRNPLDFALWKSAKPGEISWDSPWGKGRPGWHIECSVMATKHLGDTIDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS A W+HN F+ + +G KMSKS GNF+ +++++ Sbjct: 234 AFPHHENEIAQSESKTG-HPFARYWMHNAFVTMGEDGEKMSKSLGNFVLVHDII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------------- 341 + ++R + HYR P+ F+ L EA +SK T Sbjct: 287 -KEIDPQILRFFLASAHYRRPLKFSESSLQEATANVSKIQTTFSNTRYRLEQAVESLEDD 345 Query: 342 ----TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASA 389 S ++ + +D N + + L++ +E + L + + Sbjct: 346 QDVWASFEALEGKFQEEMDDDFNAANGMTVLYQFVKEWNVYLEREIVSRVILEKLLEKAE 405 Query: 390 HILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 + I KE + + I+ L+ ERL K K F+ +D IR+ L+++G +LED Sbjct: 406 QLFAIFGMKEVQEELVDDDIQALIDERLEARKAKNFARSDEIRELLKAQGIVLEDT---- 461 Query: 450 NGQRMTRWKQ 459 + TRW++ Sbjct: 462 --AQGTRWRR 469 >gi|240141599|ref|YP_002966079.1| cysteine tRNA synthetase [Methylobacterium extorquens AM1] gi|240011576|gb|ACS42802.1| cysteine tRNA synthetase [Methylobacterium extorquens AM1] Length = 462 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 204/476 (42%), Positives = 279/476 (58%), Gaps = 37/476 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M +++YNTL R+ F IDP+N+RMY CGPTVYD AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MTPMLRLYNTLTREKAAFVPIDPTNVRMYACGPTVYDAAHIGNARPIIVFDLLFRLLRHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG VTY RN+TD+DDKI RA + I +T QF +D L L Sbjct: 61 YGAAHVTYARNVTDVDDKINARA------LERGITIRELTDGTLAQFHRDIRDLGVLMAG 114 Query: 121 -----------HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRK 169 +PRAT+HI +M LI+ +++ GHAY A ++FD S+P+YG+ S+R Sbjct: 115 DVNRAGEPARFIEPRATDHIAEMHRLIEGLVVAGHAYVAEGHVLFDVPSMPDYGALSKRP 174 Query: 170 IDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHY 226 +DE + G RV +K++P DF+LWK S EP W SP G GRPGWHIECSAMS + Sbjct: 175 LDEMESGARVEVAPYKRSPLDFVLWKPSKAGEPSWPSPCGIDLPGRPGWHIECSAMSWKH 234 Query: 227 LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFI 286 LG+ FDIH GGLDLIFPHHENE+AQS C + A++W+HNGFL +EG KMSKS GNFI Sbjct: 235 LGETFDIHAGGLDLIFPHHENEVAQSRCCFGTDVMAHVWLHNGFLQVEGEKMSKSLGNFI 294 Query: 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--- 343 TI ++L+ WP V+RL ML THYR+PID+T++ L E+ +L +W + + Sbjct: 295 TIRQVLDD-------WPGEVVRLNMLKTHYRQPIDWTLRGLEESSRMLDRWYEAAGEAAP 347 Query: 344 KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNK 403 + V+ AL +DLNT +A+ LH+LA S + + E + Sbjct: 348 DAEVPEGVVEALCDDLNTPAALGELHRLAGTSPSALKAGAGLMGFLAVTQAQREAERVGA 407 Query: 404 N--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 +E L+ ER K ++++D +R L + G ++D K+ T W Sbjct: 408 AGIDVARVEALIAERKAARVAKDWAASDRVRDALTALGVSVKDNKDGT-----TTW 458 >gi|225871262|ref|YP_002747209.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] gi|225700666|emb|CAW95246.1| cysteinyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] Length = 447 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 164/466 (35%), Positives = 237/466 (50%), Gaps = 36/466 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I + MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLREFVPITDKVVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYAGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A++ + + + F++DT L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAKES------GVSPKELADRFIAAFMEDTKALGVKPATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I I +I G+AYE+ +I F + NY + + I + + G E Sbjct: 114 VMDYMDEIIAFIAALIKKGYAYESAGDIYFRVAKASNYARLANKTIADLEAGASGRTDTE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W SPW GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TALKEDPLDFALWKSAKLGEISWASPWSAGRPGWHIECSVMATELLGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T+++LL+T Sbjct: 234 FPHHTNEIAQSEAKT-SKTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDLLKTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 +R + HYR+PI+FT + + +A + L T ++ A Sbjct: 287 -DGQTLRFFLATQHYRKPINFTEKAIHDAGVNLKYLKNTLQQPTVATADASQLAAFITAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ +D NT + I L +A+ + + F + GI E L+ Sbjct: 346 KAAMNDDFNTANGITVLFDMAKWINSGAYSEAVKSAFEEMLAVFGIVFEAESLD----TE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 IE+L+ ER + F+ AD IR QL ++G L D K R Sbjct: 402 IEQLIAERQEARANRDFARADAIRDQLAAQGIKLLDTKEGVRWIRG 447 >gi|256829728|ref|YP_003158456.1| cysteinyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] gi|256578904|gb|ACU90040.1| cysteinyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] Length = 485 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 172/499 (34%), Positives = 247/499 (49%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L RK EF + P ++ MYVCG T YD+ HIG+AR +VFDVL R LRY + Sbjct: 1 MQIYNSLTRKKEEFIPLKPGHVSMYVCGITAYDYCHIGHARSAVVFDVLVRYLRYIGMQ- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII RA +E I F D RL L +P+ Sbjct: 60 -VTFVRNFTDVDDKIINRANRE------GTDFESIARSYIDAFYTDMDRLGILRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L +N+I HAY + ++ F S +YG S R I++ G R+ Sbjct: 113 ATEHIKEMIELCENLIAKKHAYSTPSGDVYFRVRSYADYGKLSGRNIEDLMSGARIEPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS YL FDIHGGG DL FP Sbjct: 173 EKEDPLDFALWKGAKPGEPSWPSPWGPGRPGWHIECSAMSERYLPLPFDIHGGGQDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQ+ A ++ W+HNGF+ + KMSKS NF+TI ++L ++ Sbjct: 233 HHENERAQTEAAT-DKQFVRYWVHNGFVQINSEKMSKSLNNFVTIRDILA-------NYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------ 345 V+R ++ HYR P+D+T L E+E L + T T+ Sbjct: 285 PEVLRFFLITKHYRSPLDYTSDALEESERALKRIYLTKTAAEAHVAGTKWTATPLPAEIV 344 Query: 346 ----IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 ++ ++ +D+NT +A+ + L + + + L +F Sbjct: 345 VEATALEAKWDDSMADDMNTAAALGHVFVLMKIVNRILEDKTLKKSEQGRDMIRHALKLF 404 Query: 386 NASAHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG+ + + + + ++ +QER K F+ +D IR Sbjct: 405 ERWGEVLGLFLMPSSDFLTQLKESRVLRRKIDTDLVQTKLQERKEARAAKDFARSDAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L + G ++D Sbjct: 465 ELLALGVTIQDTAQGVQWD 483 >gi|253581402|ref|ZP_04858628.1| cysteinyl-tRNA synthetase [Fusobacterium varium ATCC 27725] gi|251836766|gb|EES65300.1| cysteinyl-tRNA synthetase [Fusobacterium varium ATCC 27725] Length = 473 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 187/493 (37%), Positives = 266/493 (53%), Gaps = 63/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL KI EF+ + + MYVCGPTVY++ HIGNARP I FD + R Y + Sbjct: 2 IKIYNTLSGKIDEFKPVKEGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV+N TD+DDK+I RA +E ++ I K + + +DT+++ +P Sbjct: 61 -VKYVQNFTDVDDKMIRRANEE------GVSLKDIAEKYIKAYFEDTSKVNLKEAGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI +IQN+I G+AYEA ++ F+ + YG+ S++ +++ K G R+ Sbjct: 114 KATEHIGDMIEIIQNLIEKGYAYEAEGDVYFNVEKYKDGYGALSKQNVEDLKSGARIEVA 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 174 DIKKSPVDFALWKAAKEGEPSWDSPWGKGRPGWHIECSAMSHRYLGDTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ E A W+HNG++N+ G KMSKS G F+ + ++LE + Sbjct: 234 PHHENEIAQSKCSCGGE-FARYWMHNGYININGEKMSKS-GTFMLLRQVLE-------QF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------TSTSKGIIDPA-- 350 VIRL +L HYR+P+DF+ L +A+ L + T +G D A Sbjct: 285 EGRVIRLFILGAHYRKPMDFSNYELNQAKSSLERIENALLRAKDALAADTKEGGADCAEL 344 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTKNH--DLLP-------------IF 385 ++A+ +D NT + A+ +L +E K D L + Sbjct: 345 AEVLKSSSEKFVTAMDDDFNTAQGLGAIFELIKELNKALEGDKLSAKGKETVKETVDYVV 404 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N +LG I + S +E +++ R K ++ +D IR +L G ++D Sbjct: 405 NIMQEVLGVILKLDNEVGNLTSELVEFILEMRREARADKNWAMSDKIRDRLAEMGIKIKD 464 Query: 445 YKNPDNGQRMTRW 457 K+ T W Sbjct: 465 GKD------TTTW 471 >gi|206560514|ref|YP_002231278.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia J2315] gi|229558622|sp|B4ED73|SYC_BURCJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|198036555|emb|CAR52452.1| cysteinyl-tRNA synthetase [Burkholderia cenocepacia J2315] Length = 465 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D + L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHEDESALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQASDGDVNYSVRKFTNYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W S +G GRPGWHIECSAM LG FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWASKYGMGRPGWHIECSAMGCSLLGNHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A E N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-ETFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVDADTLALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 SGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLEAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|15673833|ref|NP_268008.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|24418700|sp|Q9CEJ0|SYC_LACLA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|12724882|gb|AAK05949.1|AE006415_4 cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|326407342|gb|ADZ64413.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56] Length = 448 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 250/473 (52%), Gaps = 42/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A+ N + + + F +DT L + P+ Sbjct: 60 -VQYISNFTDVDDKIINGAKA------ANMTTTDFSERYIAAFYEDTDALNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI IQ ++ AY + ++ F S +Y + + + + G E Sbjct: 113 ATEFIEAMIEFIQELVDKEFAYVSQGDVYFRVSKSKDYAKLANKNLADLLAGASGRTDEE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK + E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TKLKESPADFALWKSAKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQSEAKTGQK-FVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVVN----- 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 ++R + THYR P++FT LTEAE + K ++ Sbjct: 287 --PQILRFFLATTHYRRPVNFTDDALTEAENNIKKIENAYRHLDEQAESNLSALTTFRND 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + + + K + ++ F+ ILGI+ E ++ Sbjct: 345 FVAAMDEDFNIANGMTVFYDFVSWVNKGNGGPEVKEFFDQVLEILGIKFKFEQ---SLDS 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE +++ R + +++ F+ +D IR L+++G +LED K+ RW ++ Sbjct: 402 EIEAMIEARQLAREVRDFAKSDEIRDALKAQGIVLEDTKD------GVRWHRE 448 >gi|163783157|ref|ZP_02178151.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159881491|gb|EDP75001.1| cysteinyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 489 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 164/511 (32%), Positives = 254/511 (49%), Gaps = 77/511 (15%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K+ EF ++P + +Y CG TVYD +H+G+ R +IVFD R L + + Sbjct: 1 MKIHNTLTGKVEEFVPVNPPKVLIYTCGVTVYDDSHVGHGRSLIVFDTFRRFLEHLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII RA++E I ++ + +D + +PR Sbjct: 60 -VTFVRNFTDVDDKIINRAKEECT------DFMTIANRYIASYYRDMEAIRVKPADVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T H+ +++ +IQ++I G+AYE++ ++ F S +YG S+R +E + G RV Sbjct: 113 VTEHMKEIVDVIQSLIEKGYAYESDGDVYFSVRSFKDYGKLSKRSPEEMEAGARVEPSEK 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + EP W+SPWG+GRPGWH EC AM +LG+ DIHGGGLDL+FPH Sbjct: 173 KRDPLDFALWKSAKAGEPSWDSPWGKGRPGWHTECVAMIFKHLGETIDIHGGGLDLVFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQ+ + A W+HNG + + G+KMSKS GN++T+ E+ + Sbjct: 233 HENEIAQAEAVTG-KPFARYWMHNGLVTVGGQKMSKSLGNYVTLKEIYT-------KYHP 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------------- 345 ++RL +L THYR P+DF+ +++ E + + Sbjct: 285 DILRLLVLFTHYRSPLDFSWEKMEETQRAYDRLKGAIEDYEVLKELEVIPGKGGAHPLYD 344 Query: 346 ---IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------------------- 380 ++ + +L +D NT A+ + L E K + Sbjct: 345 KVKEVEESFFESLSDDFNTPEALSHIFSLVSELGKVKNRTYSEGKIDESELGAYEYASRF 404 Query: 381 LLPIFNASAHILG-----------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSAD 429 LL +L +E E + ++ L++ R + + K+F AD Sbjct: 405 LLNTLKKIFGLLEDLYPECEVRRVVERELEAGEVLDTKLVDLLIEVRTLARQEKQFRIAD 464 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IR +L+ G LED TRWK++ Sbjct: 465 LIRDRLKELGIELEDT------PAGTRWKKR 489 >gi|290968519|ref|ZP_06560058.1| cysteine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] gi|290781515|gb|EFD94104.1| cysteine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] Length = 481 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 163/501 (32%), Positives = 239/501 (47%), Gaps = 65/501 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + + +YNTL RK +F + P ++MYVCG T Y+ +H+GNARP + +DV+ R L + Sbjct: 2 RDLYVYNTLTRKKEKFVPLTPGQVKMYVCGITPYNHSHMGNARPFVTWDVIKRYLEHLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VT+++N TD+DDKII A E I ++ + L Sbjct: 62 --AVTHIQNFTDVDDKIIHAANGEQVRW------DTIANRYIASYFDVMDALHVRHADIY 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR + H+P++I +IQ ++ G AY ++ + +YG S R +D+ + G R+ Sbjct: 114 PRVSEHMPEIIQMIQTLLDKGMAYVVEQDVYYSVEKFVDYGKLSGRTLDDMQAGARIEVD 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + EP WESPWG+GRPGWHIECSAMS YLGK FD HGGG DLIF Sbjct: 174 TRKHHPMDFALWKGAKEGEPSWESPWGQGRPGWHIECSAMSCKYLGKTFDFHGGGSDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + W+HNGF+ + KMSKS NF + ++L + Sbjct: 234 PHHENEIAQSEACTGVSPMVRYWLHNGFITINSEKMSKSLHNFFLVKDVLA-------YY 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------- 340 +R ++ HYR P+DFT RL E L + + Sbjct: 287 DPDAVRFFLISNHYRSPLDFTDARLEEMTRSLERLRTSIMNVLELATMPAGGKSAEAAAL 346 Query: 341 STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH----------------DLLPI 384 T + +A+ +D NT A AL +LA++ ++ I Sbjct: 347 LTEAQQVAEDFETAMCDDFNTALAAAALFELAKKVNIYREAVVNNGVPVDTSVITEVKRI 406 Query: 385 FNASAHILGIE------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 F ILGI + +E +++ R + K++ AD IR +L++ Sbjct: 407 FKMMTDILGILESAWNGQTSSADASEYAALVEAVLEIRKECREKKQYELADAIRDKLQAL 466 Query: 439 GFILEDYKNPDNGQRMTRWKQ 459 G +ED + RWK+ Sbjct: 467 GITIEDS------PQGARWKK 481 >gi|332365783|gb|EGJ43540.1| cysteine--tRNA ligase [Streptococcus sanguinis SK355] Length = 447 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 246/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ ++MYVCGPTVY++ H+GNAR I FD + R Y E Sbjct: 2 IKIYDTMSRDLREFVPIEGGKVKMYVCGPTVYNYIHVGNARSTIAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DD+II RA++E + K F +D T L T PR Sbjct: 61 -VNYISNFTDVDDRIINRAKEE------GITPKEVADKYIAAFREDVTALGVKLATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + + +I +Q ++ G+AYE+ ++ F NY + + + + ++G E Sbjct: 114 VIDFMEAIIDFVQTLVDKGYAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGAGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +A L T G D A Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVHDAATNLKYLKNTYEQPFTGQADSAQLQVFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I +LA+ ++ F + GI +E L+ + Sbjct: 346 TAAMDEDFNAANGITVAFELAKWINSGNYTAEVKAAFAKLLEVFGIVFVEEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE+L++ER + + F++AD IR +L ++G L D K+ G R TR Sbjct: 402 IERLIEERQVARANRDFATADRIRDELAAQGIKLLDTKD---GVRWTR 446 >gi|310779627|ref|YP_003967960.1| cysteinyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] gi|309748950|gb|ADO83612.1| cysteinyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] Length = 475 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 261/494 (52%), Gaps = 63/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL+ K+ EF+ + + MYVCGPTVY++ HIGNARP I FD + R L Y Sbjct: 2 LRIFNTLKGKVEEFKPLKEGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV+N TD+DDK+I+RA +E + + K + +DT ++ +P Sbjct: 61 -VKYVQNFTDVDDKMIKRANEE------GITLKEVADKYIAAYFEDTAKVNLKEDGMLRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEK 182 +AT HI +MI LI+ +I AYE ++ F + YG S++ ++ + G+RV Sbjct: 114 KATEHIGEMIKLIKTLIEKDFAYEVQGDVYFSVKNYNEKYGELSKQNTEDLQSGSRVDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + EP W SPWG+GRPGWHIECSAMS+ YLG FDIHGGG DLIF Sbjct: 174 DIKRSPLDFALWKAAKEGEPSWGSPWGKGRPGWHIECSAMSNKYLGPTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA + A WIHNG++N++G KMSKS GNF + E+LE + Sbjct: 234 PHHENEIAQSKCATGGD-FARYWIHNGYINVKGEKMSKSLGNFFLLREVLE-------KY 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------- 340 V+R +L +HYR+PIDF+ L +A+ + + + Sbjct: 286 EGKVVRFFVLSSHYRKPIDFSEDELNQAKAAVERIENSLMRVLEKMDERDSIGDHLAVES 345 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------------LLPIF- 385 + + ++A+ D NT I ++ +L +E K D F Sbjct: 346 LAKALEESKTKFVAAMDEDFNTSQGIGSIFELIKEMNKFMDGTSLDAEGREVLTAASDFI 405 Query: 386 -NASAHILGIEV-CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 A +LG+++ ++ + S ++ +++ R + ++ +D IR +L G ++ Sbjct: 406 KEAIIEVLGVDIKVEKKVGNMTSELVDFILEIRQNARVERNWALSDKIRDRLGDMGVKIK 465 Query: 444 DYKNPDNGQRMTRW 457 D K+ T W Sbjct: 466 DGKDK------TTW 473 >gi|294084247|ref|YP_003551005.1| cysteine--tRNA ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663820|gb|ADE38921.1| Cysteine--tRNA ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 465 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 204/484 (42%), Positives = 280/484 (57%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K+YNTL R+ EF +DP++I +Y CGPTVYD H+GNARP++VFDVL RLLR YG Sbjct: 2 SGLKLYNTLTRQKDEFVPLDPAHIGIYACGPTVYDRIHVGNARPIVVFDVLVRLLRRQYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITD+DDKII RA + N +I+ + + + F DT L AP + Sbjct: 62 --TVTYVRNITDVDDKIIARADER------NMSIATLCADTIKSFHADTESLLTKAPDAE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI M+ +I+ +I +G AYEA ++F +P YG SRR +D+ G RV Sbjct: 114 PRATKHIDGMVAMIKTLIANGFAYEAEGHVLFHVKQMPTYGGLSRRSMDDMIAGARVEVA 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++ +DFILWK S+ +PGW+SPWGRGRPGWHIECSAMS YLG+VFDIH GGLDLIF Sbjct: 174 PYKRDASDFILWKPSSQAQPGWDSPWGRGRPGWHIECSAMSKFYLGEVFDIHAGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA +K AN W+HNGF+ +EG MSKS G+F+T+ + + + Sbjct: 234 PHHENEIAQSCCAHNTDKMANYWLHNGFVTVEGETMSKSTGHFVTVADAVAKHR------ 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----STSKGIIDPAVLSALYND 358 V+R +L HYR P+DF+ +A L + + + + +D A L L +D Sbjct: 288 -GEVVRYILLSAHYRAPLDFSDHAAFDARNSLDRLYRAVGDVAADETKVDAAFLDCLCDD 346 Query: 359 LNTVSAIQALHKLARESTKNHDLLPI-FNASAHILGI----------------------E 395 LNT +A+ LH+LAR + K I +SA ++G+ E Sbjct: 347 LNTPAAMARLHELARLANKGDAAAAIALKSSAEVMGLLGQTGDAWGKGEIKDLSSSMTRE 406 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + I+ + R + + F+ AD IR +L + G LED T Sbjct: 407 PTSSAQLEVDNSDIDAKIAARNVARNRRDFAEADRIRDELAADGIHLEDT------AEGT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 IWRR 464 >gi|21674967|ref|NP_663032.1| cysteinyl-tRNA synthetase [Chlorobium tepidum TLS] gi|34222752|sp|Q8KAK2|SYC_CHLTE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21648199|gb|AAM73374.1| cysteinyl-tRNA synthetase [Chlorobium tepidum TLS] Length = 487 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 166/498 (33%), Positives = 241/498 (48%), Gaps = 54/498 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY- 61 + IYN+L R F+ I P +YVCGPTVY AH+G+A+ + FDV+ R LR+ Sbjct: 2 SSLHIYNSLTRTKEPFKPIHPGLATIYVCGPTVYGHAHLGHAKSYVSFDVVVRWLRHVGE 61 Query: 62 -GEKCVTYVRNITDI----DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 V YV+NITD+ DD + + + + T+ F +D RL Sbjct: 62 EQGYKVRYVQNITDVGHLTDDADEGEDKIQKQARQERIEPMEVAQYYTRSFYEDMDRLGV 121 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRR-KIDEQKM 175 P P AT HIP+ I L++ +I GHAYE+N + FD +S YG S R + + Sbjct: 122 ERPNIAPTATGHIPEQIALVERLIESGHAYESNGNVYFDVNSFEGYGKLSGRTDQEALQS 181 Query: 176 GTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 G RV E+ K+NP+DF LWK++ P W+SPWG G PGWH+ECSAM+ YLG DIH Sbjct: 182 GGRVAERSDKRNPSDFALWKKAEPGHIMKWQSPWGEGYPGWHLECSAMAMKYLGDTIDIH 241 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG++ FPHH+ EIAQS A + W+HN + ++G KM KS NF+ + EL Sbjct: 242 GGGMENKFPHHDCEIAQSEAATG-KPFVRYWMHNNMVTVDGVKMGKSLKNFVNLKELFG- 299 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-------STSKGII 347 + VIR +L +HYR P+DF+ + ++ K +T + KG + Sbjct: 300 ------KFDPLVIRFFILQSHYRSPLDFSEAAIRASQSGFEKLQETYKRLVESAEGKGQL 353 Query: 348 DPA-----VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS------------AH 390 D A + AL +D NT AI L + + D + AS Sbjct: 354 DVATFEQKITDALNDDFNTPVAIAVLFEFIKALNGALDKDGLDAASKSGAQNLFDSYAGK 413 Query: 391 ILGIEVCKEHLNKNISIA--------IEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +LGI ++ L S + L++ R K F+++D IR L +G + Sbjct: 414 VLGILKSRDELLAGESGESAQTLNDVMAVLLELRKEARASKDFATSDKIRDLLMERGIEI 473 Query: 443 EDYKNPDNGQRMTRWKQK 460 +D + W +K Sbjct: 474 KDTR------EGATWSKK 485 >gi|262067257|ref|ZP_06026869.1| cysteine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] gi|291379031|gb|EFE86549.1| cysteine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] Length = 473 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 178/492 (36%), Positives = 271/492 (55%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ I + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPIKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT ++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANAE------NVSIKEIAERYIKAYFEDTAQINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT++I MI +I++++ G+AYE+N ++ F+ YG S++ I++ + G R+ Sbjct: 114 KATDNIDGMINIIKSLVDKGYAYESNGDVYFEVKKYREGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKRDALDFALWKSSKPNEPSWDSPWGKGRPGWHIECSAMSRRYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS C A W+HNG++N+ G KMSKS+G+F+ + ++L + + Sbjct: 234 PHHENEMAQSKCGCGG-TFARYWMHNGYININGEKMSKSSGSFVLLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 VIRL +L +HYR+P++F+ L + + L + + Sbjct: 286 EGRVIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENSLKRIKELNRENLDGTNDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNA------- 387 +K ++ + A+ D NT A+ + +L + K D + +F+ Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHVFELVKSVNKALDEGNFSKTAIEVFDEVYSYLVM 405 Query: 388 -SAHILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIEEVLGVKLKLEAEVNNISADLIELILELRKDAREQKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|303249127|ref|ZP_07335367.1| cysteinyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] gi|302489452|gb|EFL49399.1| cysteinyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] Length = 485 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 170/499 (34%), Positives = 244/499 (48%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++NT+ R F + P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQLFNTMARAKEPFSPLHPCKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHLGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII++A E + I + F +D +L L +PR Sbjct: 60 -VTFVRNFTDVDDKIIKKAASEGA------TCAGIAERYIAAFYEDMDKLGILRADAEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT ++ M + + +I GHAY + ++ F S +YG S R I++ + G RV Sbjct: 113 ATEYVAAMADMAERLIETGHAYRTPSGDVYFRVRSFADYGKLSGRDIEDMRAGARVAPGD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK S P EP WESP+G GRPGWH+ECS MS LG FDIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKASKPGEPVWESPFGPGRPGWHLECSVMSEKLLGIPFDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A E W+HNGF+ + KMSKS GNFITI ++ + + Sbjct: 233 HHENEIAQSEAATGKE-FCRFWVHNGFVRINTEKMSKSLGNFITIRDI-------YKRYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------------S 341 V+R ++ +HYR P+D++ Q L EAE + + + Sbjct: 285 PEVLRFFLVASHYRSPLDYSDQALDEAEKGIKRLYAAKGQMEQALTRAKWSGTKLPAEIA 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 + ++A+ +D NT A+ + R + + + +L F Sbjct: 345 EELARHEQGFIAAMDDDCNTAQALGHVFGAVRLAGRLLEDKTLAKSAETADILRRILADF 404 Query: 386 NASAHILG------------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 + ILG ++ C+ ++ LV ER K K F +D IR Sbjct: 405 ETWSGILGVCGRDSREFLDALKACRAARLGIDPTRVDALVAERQDARKAKDFPRSDAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L + G + D Sbjct: 465 ELATLGVTVMDTPTGPQWD 483 >gi|77745319|gb|ABB02560.1| cysteinyl-tRNA synthetase [Lactobacillus reuteri] Length = 470 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 166/492 (33%), Positives = 256/492 (52%), Gaps = 59/492 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL RK EF+ + P + MYVCGPTVY++ HIGNAR I FD + R L + + Sbjct: 2 LTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A ++ + + K F++DT + T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAAEQ------GITVPQLAEKYINAFMEDTAAINIEPATLHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I ++I +Q ++ G+AY + ++ + + +YG S + +D+ ++G Sbjct: 114 ATENITEIIKFVQGLVEKGYAYPKDGDVYYRSRKFNHYGQLSGQSLDDLEVGASEHVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ YLGK DIH GG DL Sbjct: 174 EVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS + W+HNGF+ + + KMSKS NFIT++E++ Sbjct: 234 EFPHHENEIAQSEAETGQK-FVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEII------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK---------WPQTSTSKGIIDP 349 + V+R M T YR PI ++ LT+A+ L+ + + +G + Sbjct: 287 -KEVDPQVLRFFMATTQYRRPIQYSQANLTDAQNNLNHIQIAFDNLTYREQDADEGDVQE 345 Query: 350 ----------AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNAS 388 ++A+ +D+N + I +++L + + + Sbjct: 346 VTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAHQDNVSLGAIQAIKKELVEL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G++ + N+ I++L++ER I K K F+ +D IR L+ +G ILED Sbjct: 406 MSIFGVK-LEASDNQINDEKIKQLIEERNIARKNKDFARSDEIRHNLKKQGIILEDT--- 461 Query: 449 DNGQRMTRWKQK 460 + TR K++ Sbjct: 462 ---PQGTRHKKE 470 >gi|194396665|ref|YP_002037254.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae G54] gi|194356332|gb|ACF54780.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae G54] Length = 447 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 243/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I G AYE+ ++ F NY + + +++ +G E Sbjct: 114 VVEFMADIIRFVEDLIERGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|315221317|ref|ZP_07863240.1| cysteinyl-tRNA synthetase [Streptococcus anginosus F0211] gi|315189676|gb|EFU23368.1| cysteinyl-tRNA synthetase [Streptococcus anginosus F0211] Length = 447 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 168/471 (35%), Positives = 244/471 (51%), Gaps = 42/471 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F ++ ++MYVCGPTVY++ H+GNAR FD + R Y E Sbjct: 2 IKIYDTMTRSLRKFVPLEEGKVKMYVCGPTVYNYIHVGNARSTAAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVQPATQHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ +I +Q ++ G AYE+ ++ F NY + + + + ++G E Sbjct: 114 VVDYMTDIIDFVQVLVDKGFAYESEGDVYFRVEKSHNYAKLANKTLADLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK P E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAVKPGEIFWDSPWGPGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDDVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIID--------PAV 351 V+R +YR+PI+FT + + +AE+ L T G +D Sbjct: 286 IDGQVLRFFFATQYYRKPINFTEKAVHDAEVNLKYLKNTYEQPFTGTVDLTELQAFLDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D N + I + +LA+ H ++ F + GI E L+ + Sbjct: 346 TAAMDEDFNAANGITVVFELAKWINSGHYSQEVKTAFAELLQVFGIVFTAEVLDAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+++R K F++AD IR +L +KG L D K+ RW + Sbjct: 402 IEALIEQRQAARVAKDFATADKIRDELAAKGIKLLDTKD------GVRWIR 446 >gi|329116688|ref|ZP_08245405.1| cysteine--tRNA ligase [Streptococcus parauberis NCFD 2020] gi|326907093|gb|EGE54007.1| cysteine--tRNA ligase [Streptococcus parauberis NCFD 2020] Length = 447 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 166/468 (35%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+++ R + +F I + + MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 IKIYDSMTRSLRDFYPIKENQVNMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII A Q + K F++DT +L + PR Sbjct: 61 -VNYISNFTDVDDKIINAAAQ------AKMTPKELADKFIAAFMEDTAQLGIKPASQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ Q+I + +I G AY++ ++ F NYG + + +++ ++G E Sbjct: 114 VMDYMDQIIDFVAALIEKGFAYQSEGDVYFRVDKSSNYGKLANKTLEDLEIGASGRTDTE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + E WESPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 TDLKENPLDFALWKSAKVGEISWESPWGAGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 234 FPHHTNEIAQSEAKTG-QTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLQTV------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------AV 351 V+R + YR+PI+FT + + +AE+ L T + D A Sbjct: 287 -DGQVLRFFLATQQYRKPINFTEKAIHDAEVNLKYLKNTQSQPLTGDASAEELQSYVTAF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D N + I + A+ H + F + + GI ++ LN + Sbjct: 346 TDAMDDDFNAANGITVVFDFAKWINSGHYTEAVKAAFESMLDVFGIIFQEDVLNAD---- 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+ +R + F+ AD IR QL ++G L D K+ G R TR Sbjct: 402 IEALIADRQAARASRDFAKADAIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|295676873|ref|YP_003605397.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1002] gi|295436716|gb|ADG15886.1| cysteinyl-tRNA synthetase [Burkholderia sp. CCGE1002] Length = 465 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 254/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLREGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRALGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII+RA + + I +T + +D L P + Sbjct: 62 N--VTYVRNITDIDDKIIKRA------VENGETIKSLTDRFIAALHEDADALGIERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIEALEKNGYAYQASDGDVNYAVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPDEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEQFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R + HYR P++++ + +A L++ Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALARLYTALKDVTPDSAALDWNEAYA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL----- 401 +A+ +D NT A+ L +LA E + D L A +LG+ + Sbjct: 346 QRFQAAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRALGAVLGLLGREPRAYLQQA 405 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 AIE + R+ + K +++AD IR +L G LED +T Sbjct: 406 AGAAAEGALEPAAIEAKIAARIAAKQAKDYAAADRIRAELLEAGVALEDKPGG-----LT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|289207861|ref|YP_003459927.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] gi|288943492|gb|ADC71191.1| cysteinyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] Length = 474 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 190/482 (39%), Positives = 282/482 (58%), Gaps = 44/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ ++NTL + F+ DP + +YVCGPTVY+ H+GN RP++VFDVL+R+LR YG Sbjct: 7 RELILHNTLGGRDEPFRPQDPERVTLYVCGPTVYNRVHVGNGRPVVVFDVLFRVLRELYG 66 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI + A + + I+ +T + T+ F +D L L PT + Sbjct: 67 PEHVIYARNITDVDDKINKAAAEN------GEPIAALTERYTRAFHEDIAELGTLPPTLE 120 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT+HI MI LI+ +I GHAY A ++FD +S P+YG+ S R +++ + G RV Sbjct: 121 PRATDHIQPMIELIERLIERGHAYPAEGHVLFDVTSYPDYGALSGRTLEDMQAGARVEVA 180 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK + EPGW+S WG GRPGWH+EC+AM +LG + DIHGGG DL+F Sbjct: 181 RYKRHPGDFVLWKPAAEGEPGWDSLWGYGRPGWHLECTAMIRSHLGAMIDIHGGGHDLVF 240 Query: 243 PHHENEIAQSCCADRIEK----TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 PHHENEIAQ C A+ + A W+HNG + ++G KMSKS GNF +++LL Sbjct: 241 PHHENEIAQGCAAEGCTEHGTYYARYWVHNGHVTIDGEKMSKSLGNFQLLHDLL------ 294 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 ++WP V+R+A+L HYR P++F+ LT++ L+ + ++PA Sbjct: 295 -QAWPGEVLRMALLSRHYRAPLNFSEDTLTQSRNALNGLYRVLRDHADVEPAPVNAADTP 353 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIEVCK------ 398 V +AL +DLNT I ALH+LA D L A A +LG+ Sbjct: 354 VFTALLDDLNTPGGITALHRLADALAAAGDPAERARLKGELTAGAGLLGLLQQDPTAWFQ 413 Query: 399 -EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + ++ +E+ + R K + F++AD IR +L ++G LED TRW Sbjct: 414 GDGEDPGLAAWVEERIAARQAARKNRDFATADAIRDELTARGIELEDT------PEGTRW 467 Query: 458 KQ 459 ++ Sbjct: 468 QR 469 >gi|292670589|ref|ZP_06604015.1| cysteine-tRNA ligase [Selenomonas noxia ATCC 43541] gi|292647755|gb|EFF65727.1| cysteine-tRNA ligase [Selenomonas noxia ATCC 43541] Length = 475 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 250/494 (50%), Gaps = 60/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L Sbjct: 2 LTVYNTMTRKKEEFHPLRTGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRFLSRKGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII A +E I+ + + K L PR Sbjct: 60 RVRYIQNFTDVDDKIINAANRE------GVTWKEISDRYIAAYFKAMDALNVRRADVFPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + + ++I +I+ +I G AY ++ + + +YG S R +++ + G RV Sbjct: 114 VSETMAEIIRMIETLIERGFAYVTGAGDVYYRVEAFAHYGRLSGRSLEDMEAGARVEVNE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG+GRPGWHIECSAMS YLG+VFD HGGG DLIFP Sbjct: 174 TKEHPMDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSVKYLGEVFDFHGGGNDLIFP 233 Query: 244 HHENEIAQSC-CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ+ C D EK A W+HNGF+ ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQAEPCIDGDEKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KEF 286 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------QTSTSKGIID-PAVLSA 354 P VIR +L THYR P+DF+ +RL EA+ L + + S+ +G D A L+A Sbjct: 287 PGEVIRFFILQTHYRSPLDFSDERLHEAQAALDRLHNVHDVIVEFSSREGTADTAAELAA 346 Query: 355 LYNDL------------NTVSAIQALHKLARESTKNHD---------------LLPIFNA 387 NT AI + LA+E + H F Sbjct: 347 QAETFLHDFDAAMDDDFNTALAISQMFGLAKEINRYHQEVERGTSFDAANFKKAADAFYT 406 Query: 388 SAHILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A I+GI +E + + ++ ++ R K ++ AD IR L++ G ++ED Sbjct: 407 MAEIIGIFEQEEMVADDGLADALMDIIIGIRQEARAAKNWAVADKIRDGLKNAGVVIEDT 466 Query: 446 KNPDNGQRMTRWKQ 459 RWK+ Sbjct: 467 PT------GVRWKR 474 >gi|89900143|ref|YP_522614.1| cysteinyl-tRNA synthetase [Rhodoferax ferrireducens T118] gi|89344880|gb|ABD69083.1| cysteinyl-tRNA synthetase [Rhodoferax ferrireducens T118] Length = 470 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 174/473 (36%), Positives = 245/473 (51%), Gaps = 38/473 (8%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++IYNTL R I + P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ Sbjct: 11 PMSLRIYNTLSRAIEPLIPLQPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVSG 70 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN+TDIDDKII+RA + ++I +T + +D L PTH Sbjct: 71 L--RVTYVRNVTDIDDKIIKRA------LENGESIRALTERMVDALHQDADALGIERPTH 122 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PRAT +PQM+ LI + G AY+A N ++ + P YG S + +DE + G RV Sbjct: 123 EPRATEFVPQMLSLIGRLEQKGLAYQAVNGDVNYAVRKFPGYGKLSGKSLDELRAGERVA 182 Query: 181 EKYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 K +P DF+LWK + P EP W+S +G+GRPGWHIECSAM LG+ DIHGGG Sbjct: 183 VADGKDDPLDFVLWKTAKPNEPLDAKWDSVYGQGRPGWHIECSAMCGQMLGETVDIHGGG 242 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL FPHHENEIAQS A + A+IW+HNGF+ + KMSKS GNF TI ++L Sbjct: 243 ADLQFPHHENEIAQSEGATG-KPLASIWMHNGFVTRDNEKMSKSLGNFFTIRDILAR--- 298 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----------I 346 + A R ++ HYR ++ + L +A L + Sbjct: 299 ----YDAETTRFFIIRAHYRSALNHSDAHLDDARNSLKRLYTALDLVAPEPLLEIDWRQP 354 Query: 347 IDPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI-----EVCKE 399 +A+ D T A+ + +LA E K D L + A LG+ +V + Sbjct: 355 FAARFKAAMDEDFGTPEAVAVMFELATEVNKTRDPKLAGLLKALGACLGLLQGDPKVFLQ 414 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + +I L+ +R K F+ AD IR+ L ++G +L+D + Sbjct: 415 AGATLDAASIAALIAQRTAAKAAKNFAEADRIRQDLLARGIVLKDSAAGTVWE 467 >gi|294781851|ref|ZP_06747183.1| cysteine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] gi|294481662|gb|EFG29431.1| cysteine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] Length = 473 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 179/492 (36%), Positives = 271/492 (55%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL + EF+ I + + MYVCGPTVY++ HIGNARP I FD + R L Y + Sbjct: 2 IKIYNTLTGHLDEFKPIKENEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 VTYV+N TD+DDK+I +A E N +I I + + + +DT ++ +P Sbjct: 61 -VTYVQNFTDVDDKMINKANAE------NVSIKEIAERYIKAYFEDTAQINLKEDGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT++I MI +I++++ G+AYE+N ++ F+ YG S++ I++ + G R+ Sbjct: 114 KATDNIDGMINIIKSLVDKGYAYESNGDVYFEVKKYKEGYGELSKQNIEDLESGARIDVN 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+ DF LWK S P EP W+SPWG+GRPGWHIECSAMS YLG FDIHGGGLDLIF Sbjct: 174 EIKKDALDFALWKSSKPNEPSWDSPWGKGRPGWHIECSAMSRRYLGDSFDIHGGGLDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA A W+HNG++N+ G KMSKS+G+FI + ++L + + Sbjct: 234 PHHENEMAQSKCACGG-TFARYWMHNGYININGEKMSKSSGSFILLRDIL-------KYF 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------PQTS 341 +IRL +L +HYR+P++F+ L + + L + + Sbjct: 286 EGRIIRLFVLGSHYRKPMEFSDTELNQTKSSLERIENSLKRIKELNRENLDGTNDCQELL 345 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNA------- 387 +K ++ + A+ D NT A+ + +L + K D + + + Sbjct: 346 ATKKEMEAKFIEAMDEDFNTAQALGHVFELVKSVNKALDEGNFSKTAIEVLDEVYSYLVM 405 Query: 388 -SAHILGIEVCKEHLNKNISI-AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 +LG+++ E NIS IE +++ R + K ++ +D IR +L G ++D Sbjct: 406 IIEEVLGVKLKLEAEVNNISADLIELILELRKDAREQKNWALSDKIRDRLLELGIKIKDG 465 Query: 446 KNPDNGQRMTRW 457 K+ T W Sbjct: 466 KDK------TTW 471 >gi|116333230|ref|YP_794757.1| cysteinyl-tRNA synthetase [Lactobacillus brevis ATCC 367] gi|122270082|sp|Q03SU6|SYC_LACBA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116098577|gb|ABJ63726.1| cysteinyl-tRNA synthetase [Lactobacillus brevis ATCC 367] Length = 470 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 173/492 (35%), Positives = 252/492 (51%), Gaps = 60/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NT+ R+ F+ I P + MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 LKVFNTMTRQKETFEPITPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A +E + + + F +DT L T PR Sbjct: 61 -VKYVSNFTDVDDKMINEANKE------GITVPELGDRFIAAFKEDTAALNIEPATVNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT HI ++I +Q++I +AY + ++ + +YG + +D+ + G Sbjct: 114 ATEHINEIIEFVQDLIDKDYAYPVDGDVYYRAHKFSHYGELAHLNLDDLEEGASQHTNDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W SPWG GRPGWHIECS MS+HYLG+ FDIHGGG DL Sbjct: 174 ETARKEDPVDFALWKGAKPGEISWPSPWGAGRPGWHIECSVMSTHYLGETFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 IFPHH+NEIAQS + + W+HNGF+ + + KMSKS GNF+T++++L+T Sbjct: 234 IFPHHQNEIAQSEAKTG-KTFVHYWLHNGFVTIGDDNEKMSKSLGNFVTVHDILKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------PQTSTSKGIIDPA 350 +R M T YR PI +T Q L AE L + + ++ DP Sbjct: 290 ----DPQTLRFFMSTTQYRRPIQYTQQNLDTAERNLERLQTAYDNMGYRLKDAEAGNDPK 345 Query: 351 V-----------LSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 V + A+ +D N + I +H+LAR + + + Sbjct: 346 VEQETRQIVADYIDAMDDDFNVQNGIAKVHELARLGNVYAERPVVFAGTLDFIRQTLSDL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + GI+ I+ L+ ERL K + F +D IR+QL+S+G ILED Sbjct: 406 LSVFGIKFAAAATLD--DDRIQALIDERLAARKSRDFLRSDEIREQLKSQGIILEDT--- 460 Query: 449 DNGQRMTRWKQK 460 + TRW+++ Sbjct: 461 ---PQGTRWRKE 469 >gi|254422183|ref|ZP_05035901.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7335] gi|196189672|gb|EDX84636.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7335] Length = 486 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 167/493 (33%), Positives = 242/493 (49%), Gaps = 60/493 (12%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R+ F+ + P + MY CG TVYD+ H+G+AR IV+D + R L + V Sbjct: 5 IYNTLSRQKEAFKPLSPEQVTMYCCGVTVYDYCHLGHARSYIVWDTIRRYLSWRGYN--V 62 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 YV+N TDIDDKI+ RARQE N ++ + + T + +D RL L AT Sbjct: 63 RYVQNFTDIDDKILNRARQE------NSSMEAVAKEYTTAYFEDMARLNILEADEYTYAT 116 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VPEK 182 + I + LI + G+AY A ++ + YG S RK+D+ + G Sbjct: 117 HTIDGIKRLIHQLEQKGYAYSAKGDVYYSVRKFEGYGKLSGRKLDDMEAGRSGRVGTQAD 176 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + P EP WES WG GRPGWHIECSAM LG DIH GG DL F Sbjct: 177 SIKQDPFDFALWKSAKPDEPAWESTWGPGRPGWHIECSAMVRDRLGDTIDIHMGGADLQF 236 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS A + A W+HNG +N++G KMSKS GNF TI LL+ + + Sbjct: 237 PHHENEIAQSEAATG-KPLATYWMHNGMVNVDGTKMSKSLGNFTTIRNLLDAEA----AP 291 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQTSTSKGI 346 +R+ ++ + YR P+DFT + + A+ S W + + + Sbjct: 292 DPMAVRMFVMQSQYRMPLDFTEEAIVAAKKGWSTLNEGLNFGVRHGEDLGWAKAAADEIA 351 Query: 347 ID-------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 +D ++ +D NT AI L LA+E + +++ Sbjct: 352 VDALDQAAVEQFRISMDDDFNTPGAIAVLFGLAKELQRQSNVIIHEGAADANPAELQQQW 411 Query: 383 PIFNASAHILGIEVCK-EHLNKNI--SIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 A +LG+E E ++ + IE L+ +R + K ++ +D IR +L+++G Sbjct: 412 QTLVTLAGVLGLEAQAIESVDAGVLSEAEIETLIAQRANAKQAKNYAESDRIRDELKAQG 471 Query: 440 FILEDYKNPDNGQ 452 L D Sbjct: 472 ITLIDKPGGVTAW 484 >gi|45358623|ref|NP_988180.1| cysteinyl-tRNA synthetase [Methanococcus maripaludis S2] gi|61216204|sp|Q6LYD1|SYC_METMP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|45047489|emb|CAF30616.1| Cysteinyl-tRNA synthetase [Methanococcus maripaludis S2] Length = 476 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 236/480 (49%), Gaps = 54/480 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL R EF+ ++ ++MYVCGPTVYD H+G+ R + FD++ R L + Sbjct: 2 LKVYNTLTRCEEEFKTLNEKEVKMYVCGPTVYDNTHLGHGRTYVSFDIIRRYLEHMGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA I+ + + F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRA------YEKEKDPKEISEQFIKVFLDDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I I+ +I G AY+ + + F+ NYG S +++ G R+ Sbjct: 114 VTEHISEIIAFIEKLIEKGFAYKTEDGVYFEVKKFKNYGKLSNINLEDLVSGARIETSEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKN DF LWK + P EP WESP+G GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNQKDFALWKTAKPGEPKWESPFGSGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N W+H GF+ + G KMSKS GNF+TI ++ + + Sbjct: 234 HENEIAQSSAYSG-KDWVNYWLHTGFVMVNGEKMSKSLGNFVTIGDI-------SKEYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 ++R + HYR PID+T + + + L K + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMNHVKNNLEKIYNVIENIRISLEKSEKSRTWDENEFLL 345 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNAS 388 +A+ +D NTV A++++ +++ K L L + Sbjct: 346 YDILKNSKNNFYNAMNSDFNTVKALKSVFEVSNGVNKYLSLTKTPSEGLLLKALDFYKII 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ KE + + + L++ R + K + +D IR L++ G+ +ED Sbjct: 406 GEIFGLFENYFKESSDSDEEEFVTFLIELRSDVRLQKNYEMSDKIRDGLKNLGYQIEDNP 465 >gi|171778429|ref|ZP_02919587.1| hypothetical protein STRINF_00438 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282830|gb|EDT48254.1| hypothetical protein STRINF_00438 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 448 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 165/470 (35%), Positives = 250/470 (53%), Gaps = 39/470 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 IKIY+T+ R + +F I + + MYVCGPTVY++ HIGNAR ++ FD + R Y Sbjct: 1 MTIKIYDTMTRSLRDFVPITENTVNMYVCGPTVYNYIHIGNARSVVAFDTIRRYFEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y+ N TD+DDKII+ A + K F++D L T Sbjct: 61 K--VNYISNFTDVDDKIIKGAAA------AGMDTKAFSDKFIAAFMEDVKELGVEPATKN 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---V 179 PR +++ ++I +++++ G AYEAN ++ F + NY + + +++ ++G Sbjct: 113 PRVIDYMDEIIAFVKDLVDKGFAYEANGDVYFRVAKSKNYAKLANKTLEDLEVGASGRVD 172 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K+NP DF LWK + P E W+SPWG+GRPGWHIECS M++ LG DIHGGG D Sbjct: 173 GEGDIKENPLDFALWKAAKPGEVSWKSPWGQGRPGWHIECSVMATSILGDTIDIHGGGAD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 L FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNF+T++++L+T Sbjct: 233 LEFPHHTNEIAQSEAKTG-KTFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLKTV---- 287 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDP 349 V+R + YR+P++FT + + +A + L T S Sbjct: 288 ---DGQVLRFFLATQQYRKPVNFTEKAVHDASVNLKYLKNTFTLPLGEAVDSAELEKFKA 344 Query: 350 AVLSALYNDLNTVSAIQALHKLARESTK-NHDL--LPIFNASAHILGIEVCKEHLNKNIS 406 +A+ +D NT + I + +A+ N+D F + G+ +E L+ + Sbjct: 345 DFEAAMDDDFNTANGITVVFDMAKWINSGNYDQVTKDTFAKILAVFGVVFEEEVLDAD-- 402 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE LV++R + F++AD IR QL ++G L D K+ G R TR Sbjct: 403 --IEALVEKRQEARANRDFATADAIRDQLAAQGIKLLDTKD---GVRWTR 447 >gi|125624812|ref|YP_001033295.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363] gi|187629844|sp|A2RMS1|SYC_LACLM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|124493620|emb|CAL98607.1| CysS protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071611|gb|ADJ61011.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000] Length = 448 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 254/473 (53%), Gaps = 42/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A E N + ++ + F +DT L + P+ Sbjct: 60 -VEYISNFTDVDDKIIKAAASE------NISTKELSERYIAAFYEDTDLLNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI IQ ++ +AY + ++ F + +Y + + + + G E Sbjct: 113 ATEFIEAMIDFIQELLDKDYAYISEGDVYFRVAKSKDYAKLANKNLADLLAGASGRTDEE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TNLKESPADFALWKSVKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQSEAKTGQK-FVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVV------ 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 ++R + THYR P++FT LTEAE + K ++ Sbjct: 286 -DPQILRFFLTTTHYRRPLNFTDDALTEAENNIKKIENAYRHLDDQAESNLSALTTFRND 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + + + K + ++ F+ ILGI+ + +++ Sbjct: 345 FVAAMDEDFNIANGMTVFYDFVSWVNKGNGGAEVKAFFDQVLEILGIKF---EIEQSLDS 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE +++ER + +++ F+ +D IR L+++G +LED K+ RW ++ Sbjct: 402 EIEAMIEERQLAREVRDFAKSDEIRDALKAQGIVLEDTKD------GVRWHRE 448 >gi|94676564|ref|YP_588592.1| cysteinyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123081502|sp|Q1LTX2|SYC_BAUCH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|94219714|gb|ABF13873.1| cysteinyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 462 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 176/481 (36%), Positives = 258/481 (53%), Gaps = 48/481 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL K F+ I + +YVCG T YD HIG+ R + FDV+ R LRY E Sbjct: 2 LAIFNTLTNKKEIFKPIHIGKVALYVCGVTAYDLCHIGHVRTFVTFDVVIRYLRYCGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+RNITDI+DKII +A ++ +T + + D L L P +PR Sbjct: 61 -VNYIRNITDIEDKIIRKAANN------GESCQQLTDRMIAEMHHDLDLLNILRPDKEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI ++I L + +I HAY +N +++F S NYG S + +++ ++G RV Sbjct: 114 ATQHIKEIIQLTRQLIDKEHAYIASNGDVMFAIESANNYGILSSQNLNQLQIGQRVKITT 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAMS YLGK FDIHGGG DLIFP Sbjct: 174 VKRNPMDFVLWKMSKHGEPTWSSPWGNGRPGWHIECSAMSIKYLGKHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS C + N W+H+G + + KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQSTCMEN-NPYVNFWMHSGMVTICNEKMSKSLSNFFTVRDVL-------KYYD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK---------GIIDPAVLSA 354 A +R ++ +HYR+P++++ + L A L + + A Sbjct: 286 AETVRYFLISSHYRKPLNYSEKSLQLARTALKSLYIALRNTKKEVIPSGGEYFIEQFMMA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIE-------VCKE 399 + ND NT +A L +LA E + + A+ILG+ + K+ Sbjct: 346 MNNDFNTPAAHAVLFQLAHEVNRLKTKNIKSAQGMAATLRYLANILGLLEQDPEVFLQKQ 405 Query: 400 HLNKNISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + +++IA IE+LV++R + K ++ AD +R++L + G +LED + T W+ Sbjct: 406 KIVTDLNIALIEELVKQRNNIRKKHQWVQADKVREKLAAMGIVLEDT------PQGTIWR 459 Query: 459 Q 459 + Sbjct: 460 R 460 >gi|209518045|ref|ZP_03266876.1| cysteinyl-tRNA synthetase [Burkholderia sp. H160] gi|209501549|gb|EEA01574.1| cysteinyl-tRNA synthetase [Burkholderia sp. H160] Length = 476 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 175/484 (36%), Positives = 256/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFDV+ R LR Sbjct: 13 ESLRIYNTLARDKQTFVPLREGVVRMYVCGMTVYDYCHVGHARVMVVFDVVQRWLRTLGY 72 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII+RA + + I +T + +D L P + Sbjct: 73 N--VTYVRNITDIDDKIIKRA------VENGETIKSLTDRFIAALHEDADALGIARPDIE 124 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + YG S + +++ + G RV Sbjct: 125 PRATDFIPQMLGMIETLEKNGYAYQASDGDVNYAVRKFEGYGKLSGKSLEDLRAGERVAA 184 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 185 NDAKQDPLDFVLWKQAKPEEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEQFDIHGGGQ 244 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 245 DLQFPHHENEIAQSEAATG-QTFVNYWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 298 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R + HYR P++++ + +A L++ Sbjct: 299 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALARLYTALKDVTPDTAALDWNEAYA 356 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEV--CKEHLNKN 404 +A+ +D NT A+ L +LA E + D L A +LG+ + +L Sbjct: 357 QRFQTAMNDDFNTPVAVSVLFELATEVNRTRDPALARQLRALGAVLGLLGREPRAYLQHA 416 Query: 405 ISIAIEKLVQ---------ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 A E ++ R+ + K +++AD IR +L G LED +T Sbjct: 417 AGAAAEGALEPAAIEAKIAARIAAKQAKDYAAADRIRAELLDAGVALEDKPGG-----LT 471 Query: 456 RWKQ 459 W++ Sbjct: 472 EWRR 475 >gi|312114423|ref|YP_004012019.1| cysteinyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311219552|gb|ADP70920.1| cysteinyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 449 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 220/467 (47%), Positives = 282/467 (60%), Gaps = 32/467 (6%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K+K+YNT R+ F+ IDP +RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 1 MKLKLYNTRTRRKELFRPIDPKAVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI RA E +I +T + QF D + L PT + Sbjct: 61 AEHVIYARNITDVDDKINARAAAE------GVSIRELTERTAAQFHADAAAIGALPPTIE 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT HI +MI L++ ++ GHAY A ++F+ S +YG SRR +D+ + G RV Sbjct: 115 PRATEHIAEMIALVERLVERGHAYAAEGHVLFNVPSDDDYGGLSRRSVDDMRAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK S EPGWESPWG GRPGWH+ECSAM+ +LG VFDIHGGG+DL+F Sbjct: 175 PYKRDPMDFVLWKPSEGAEPGWESPWGFGRPGWHLECSAMAEKHLGTVFDIHGGGIDLLF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQS CA E AN W+HNG L +EG+KMSKS GNFITI +LL + W Sbjct: 235 PHHENELAQSTCAHDTEVMANYWVHNGHLQVEGQKMSKSLGNFITIRDLL-------KDW 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVL 352 P VIRL ML THYR+P+D+T + L E++ +L +W + + D Sbjct: 288 PGDVIRLNMLRTHYRQPMDWTAKGLAESDQMLRRWRTNLSHEASEDDLDSKDFAELEFFR 347 Query: 353 SALYNDLNTVSAIQALHKLARESTK-NHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 L +DLNT AI +HK+ K DLL LG L IE Sbjct: 348 RDLADDLNTPMAIAEIHKMGPSGRKFALDLLG--------LGEPAEDPRLMAVDETGIEA 399 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + RL K K ++ AD IR +L + G L D KNP G+ T W+ Sbjct: 400 RITARLAARKSKNWAEADRIRDELAAMGVALMDAKNPATGEIETTWE 446 >gi|322390880|ref|ZP_08064388.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 903] gi|321142393|gb|EFX37863.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 903] Length = 447 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 173/465 (37%), Positives = 246/465 (52%), Gaps = 33/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMEDIIRFVADLIEKGYAYESQGDVYFRVEKSNNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L ++ Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDAL-------KT 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--KGIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +DPA Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFAGEVDPADLQNFVDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 ++A+ D+N + I + +LA+ H + +A A +L + + + IE Sbjct: 346 IAAMDEDINAANGITVVFELAKWINSGHYNQDVKDALAKML-EVFGVVFVEEVLDADIEA 404 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+ ER K F+ AD IR +L ++G L D K G R TR Sbjct: 405 LIAERQEARAKKDFARADAIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|325526735|gb|EGD04251.1| cysteinyl-tRNA synthetase [Burkholderia sp. TJI49] Length = 465 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 176/484 (36%), Positives = 246/484 (50%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIDAMHADEDALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATLFIPQMLGMIEKLEANGYAYQASDGDVNYSVRKFRNYGKLSGKSLDDLRAGERVAS 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDTLALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 SGAAQAGALAADEIEARIAARVAAKQAKDYAEADRIRAELLEAGVALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|299782847|gb|ADJ40845.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) [Lactobacillus fermentum CECT 5716] Length = 473 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 160/493 (32%), Positives = 250/493 (50%), Gaps = 60/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ EF + MYVCGPTVY++ HIGNAR ++ FD + R L + + Sbjct: 2 LKIYNTLTRQKEEFHPQQAGIVNMYVCGPTVYNYIHIGNARSVVAFDTVRRYLEFSGYQ- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I+ A+++ + + K Q +++DT L T PR Sbjct: 61 -VNYVSNFTDVDDKMIKAAKEQ------GITVPELAYKYIQAYMEDTAALNVEPATTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT +I +I I+++I G+AY++ ++ + +YG S + +D+ ++G Sbjct: 114 ATENIDGIISFIEDLIEKGYAYQSGGDVYYRARKFAHYGQLSGQSLDDLEVGASEHVSTE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E K +P DF LWK + P E W+SP G G PGWHIECS MS+ YLG DIH GG D Sbjct: 174 EVAKKXDPLDFALWKAAKPGEIKWDSPVGGPGAPGWHIECSVMSTKYLGDTLDIHAGGQD 233 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS + N W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 LEFPHHENEIAQSEAKTG-HRFVNYWMHNGFVTIGRDNEKMSKSLGNFVTVHDLI----- 287 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS-------------- 343 + V+R M T YR PI ++ + L EA+ L T + Sbjct: 288 --KEVDPQVLRFFMSTTQYRRPIQYSQESLVEAQANLEHLKNTYDNLAYRLKDATSGTDG 345 Query: 344 -----KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FNA 387 ++A+ +D+N + I +++L R + + + + Sbjct: 346 GVQRQLADFRARFVAAMDDDINVQNGIAVVYELMRFANQYVEQRLVQREPIVAIQLMLKR 405 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 + G+++ + I++L+++R K F+ +D IR QL +G ILED Sbjct: 406 LVAVFGVDLAV-SATEINDEKIKELIEKRNAARAEKDFALSDQIRDQLRDQGIILEDT-- 462 Query: 448 PDNGQRMTRWKQK 460 + TR++++ Sbjct: 463 ----PQGTRYRKE 471 >gi|116512729|ref|YP_811636.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] gi|123125354|sp|Q02WZ9|SYC_LACLS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116108383|gb|ABJ73523.1| cysteinyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] Length = 448 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 253/473 (53%), Gaps = 42/473 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT R++ +FQ I+P ++MYVCGPTVY++ H+GNAR ++ FD++ + L + E Sbjct: 1 MKIYNTYSRQLEDFQPIEPGKVKMYVCGPTVYNYIHVGNARSVVAFDLVRKYLEFRGFE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A E N + ++ + F +DT L + P+ Sbjct: 60 -VEYISNFTDVDDKIIKAAVSE------NISTKELSERYIAAFYEDTDLLNVKRASQNPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 AT I MI IQ ++ +AY + ++ F + NY + + + + G E Sbjct: 113 ATEFIEAMIDFIQELLDKDYAYISEGDVYFRVAKSKNYAKLANKNLADLLAGASGRTDEE 172 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++PADF LWK E W++PWG GRPGWHIECS MS+ LG+ DIHGGG DL Sbjct: 173 TNLKESPADFALWKSVKADEVSWQAPWGAGRPGWHIECSVMSTSLLGETIDIHGGGADLE 232 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + N W+HNGF+N++G KMSKS GNF T++ELL+ Sbjct: 233 FPHHTNEIAQSEAKTGQK-FVNYWMHNGFVNVDGEKMSKSLGNFTTVHELLQVV------ 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----------STSKGIIDPA 350 ++R + THYR P++FT LTEAE + K ++ Sbjct: 286 -DPQILRFFLATTHYRRPLNFTDDALTEAENNIKKIENAYRHLDDQAESNLSALTTFRND 344 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISI 407 ++A+ D N + + + K + ++ F+ ILGI+ + +++ Sbjct: 345 FVAAMDEDFNIANGMTVFYDFVSWVNKGNGGAEVKAFFDQVLEILGIKF---EIEQSLDS 401 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE +++ R + +++ F+ +D IR L+++G +LED K+ RW ++ Sbjct: 402 EIEAMIEARQLAREVRDFAKSDEIRDALKAQGIVLEDTKD------GVRWHRE 448 >gi|282897582|ref|ZP_06305582.1| Cysteinyl-tRNA synthetase, class Ia [Raphidiopsis brookii D9] gi|281197505|gb|EFA72401.1| Cysteinyl-tRNA synthetase, class Ia [Raphidiopsis brookii D9] Length = 488 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 182/506 (35%), Positives = 257/506 (50%), Gaps = 69/506 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R EFQ ++P +RMY CG TVYD+ H+G+AR IV+DV+ R L + Sbjct: 1 MTLSIYNTLTRCQEEFQPVEPGQVRMYYCGVTVYDYCHLGHARACIVWDVVRRYLEFIGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y++N TDIDDKI+ RAR+E N + + + Q + +D RL Sbjct: 61 --RVRYIQNFTDIDDKILNRARKE------NSTMETVAERYIQAYFEDMGRLGVREADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--- 179 PRAT+ + + LIQ++ + G+AY A+ ++ + + YG S RK+ + + G Sbjct: 113 PRATHTMNGIKKLIQDLEVRGYAYAADGDVYYAVRNFNEYGKLSGRKLADLQAGASERVN 172 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 PE KK+P DF LWK + P EP WESPWG+GRPGWHIECSAM LG DIH G Sbjct: 173 IEDPEYQKKKDPFDFALWKAAKPCEPAWESPWGKGRPGWHIECSAMVRDRLGDTIDIHAG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS + AN W+HNG + ++G KMSKS GNF TI +LL+ Sbjct: 233 GADLIFPHHENEIAQSEAVTG-KPLANYWLHNGMVKVDGEKMSKSLGNFTTIRDLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-----------------Q 339 R +RL +LM YR+P+DFT + + A Q Sbjct: 289 ---RGVDPMALRLFVLMAQYRKPLDFTEEAILAATNGWHTLKEGLLFGYHHGGKLDWDLQ 345 Query: 340 TSTSKGIID----PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------- 382 ++ ID +A+ +D N + + ++A+E K +++ Sbjct: 346 STNEITDIDQVEIEKFTTAVDDDFNFPGGLVVIFEIAKELRKEGNIIVHEGKTQTPSAEL 405 Query: 383 ----PIFNASAHILGI----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 +LG+ E K IE LVQ+R K K F+ +D IR++ Sbjct: 406 LTKWQTLVTLTRVLGLIAKPEDQKTIDESLSDKVIENLVQKRQEARKAKDFAESDRIREE 465 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L++KG L D K TRW+++ Sbjct: 466 LKAKGITLIDSK------EGTRWQRE 485 >gi|46579990|ref|YP_010798.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|61216247|sp|Q72BQ5|SYC_DESVH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|46449406|gb|AAS96057.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|311234011|gb|ADP86865.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris RCH1] Length = 485 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 177/499 (35%), Positives = 244/499 (48%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ F P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ RN TD+DDKII+RA +E + K F +D RL L +P+ Sbjct: 60 -VTFARNFTDVDDKIIKRANEEGL------TSQQVAEKYIDTFYEDMDRLNVLRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L + +I G AY + ++ F S P YG S R ID+ + G RV Sbjct: 113 ATGHILEMIALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS ++ DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKAAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A + W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 233 HHENEIAQTEAAL-DKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILE-------GYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------------S 341 V+R +L HYR PIDFT + EAE L + + + Sbjct: 285 PEVLRFFLLTKHYRSPIDFTFDSMDEAEKSLKRIYEALSLARTERSRSKWSATPLPADVT 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 +D A AL +DLNT +A+ + R + + L + Sbjct: 345 AEFDTLDRAFDEALEDDLNTAAALGHVFGTIRLVNRLLEDKNLRKSAETLALLERLDGLV 404 Query: 386 NASAHILGIEVCKEHL------------NKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG+ + + ++ L++ER + K F+ AD IR Sbjct: 405 AKWMKVLGVFGREPEAFLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L + G + D + Sbjct: 465 ELAALGIEVRDTPSGAVWD 483 >gi|258512691|ref|YP_003186125.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479417|gb|ACV59736.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 474 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 179/495 (36%), Positives = 248/495 (50%), Gaps = 65/495 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YN+L K Q ++P +R Y CGPTVY F H+GNAR +VFD + R L Y Sbjct: 1 MGILLYNSLTGKKEPLQTLEPGKVRFYACGPTVYHFFHLGNARMFVVFDTIRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V +V+N TDIDD+II+RA++ + + + +N + + +D +L T Sbjct: 61 E--VRFVQNFTDIDDRIIQRAQE------LGISPRELAEENIRYYFEDAGKLFIRPATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + ++I IQ++I GHAYE N + FDTSS P YG S + ++ + G R+ + Sbjct: 113 PRVTECVDEIIRFIQDLIDRGHAYERNGSVYFDTSSFPEYGKLSHQSPEDMRAGYRIEVQ 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + P E W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIF Sbjct: 173 DEKDDPTDFALWKAAKPGEEWWPSPWGPGRPGWHIECSVMNYLYLGEQIDIHAGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG LN+ G KMSKS GNFI +LLE + Sbjct: 233 PHHENEIAQSEAHSG-KTFARYWLHNGTLNINGEKMSKSTGNFIMARDLLERR------- 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----------------- 345 +R +L HYR P+++T + L +AE LS+ + Sbjct: 285 DPRAVRFFLLSAHYRNPLNYTEEALDQAEQALSRIDRLIRDLDHRAEALKAMRGALDRAD 344 Query: 346 ------------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LL 382 I A + A+ +D NT + A+ R + Sbjct: 345 EVPSTRGRSDVEQIRSAFIQAMDDDFNTADGMAAIFDGVRVVNTRLEEGGVTLGDLRLYR 404 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +F +LGI + + + IE+L+ ER K + F+ AD IR QL +G +L Sbjct: 405 DLFVELLGVLGI---PKKEEERLEDEIERLIAERAEARKRRDFARADEIRDQLRHRGIVL 461 Query: 443 EDYKNPDNGQRMTRW 457 ED TRW Sbjct: 462 EDT------PYGTRW 470 >gi|149002271|ref|ZP_01827213.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69] gi|237650136|ref|ZP_04524388.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974] gi|237821667|ref|ZP_04597512.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2] gi|147759586|gb|EDK66577.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69] Length = 447 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 242/468 (51%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + Sbjct: 2 IKIYDTMSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RAR+E + K F +D L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAREE------GVTPQEVADKYIAAFREDVAALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I ++++I AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMADIIRFVEDLIEKDFAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT------- 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +D Sbjct: 286 LDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIA 408 ++A+ D N + I + ++A+ + + I GI +E L+ Sbjct: 346 VAAMDEDFNAANGITVVFEMAKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 IE L+Q+R + F +AD IR QL ++G L D K+ G R TR Sbjct: 402 IEDLIQKRQEARANRDFETADQIRDQLVTQGIKLLDTKD---GVRWTR 446 >gi|329113816|ref|ZP_08242587.1| Cysteinyl-tRNA synthetase [Acetobacter pomorum DM001] gi|326696826|gb|EGE48496.1| Cysteinyl-tRNA synthetase [Acetobacter pomorum DM001] Length = 478 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 201/465 (43%), Positives = 275/465 (59%), Gaps = 31/465 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++++ R F IDP+++++Y CGPTVYD AHIGN R M+ DVL RLLR+ Y Sbjct: 34 LSLHDSQSRATVPFTPIDPAHVKVYYCGPTVYDLAHIGNLRAMLTADVLVRLLRHVY--P 91 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKI RAR + I +T + T++F +D + L P +PR Sbjct: 92 RVTFVRNITDVDDKITARARAN------GEDIGSLTQRTTEEFHQDLASMNVLPPDIEPR 145 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I +M +I +I +GHAYEA ++F S P+YG+ S R ++ + G RV + Sbjct: 146 ATHNIGEMQAMIARLIKNGHAYEAEGHVLFSVGSFPSYGALSGRNPEDLEAGARVEVAPY 205 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK S +PGW+SPWGRGRPGWHIECSAMS YLG FDIHGGG DL+FPH Sbjct: 206 KKAPGDFVLWKPSDADQPGWDSPWGRGRPGWHIECSAMSHRYLGDSFDIHGGGSDLLFPH 265 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS C K AN W+HN L +EG KMSKS GNF+TI ++L PA Sbjct: 266 HENERAQSMCCFPHGKFANYWVHNAMLLVEGEKMSKSLGNFLTIRDVLA-------QAPA 318 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----KGIIDPAVLSALYNDLN 360 +RL +L HYR +++T L EA L ++ + + K + VL AL +DLN Sbjct: 319 EALRLLLLGAHYRSTLNYTQAGLQEARKTLDRFYRALAAGPVPKTDVPEGVLQALADDLN 378 Query: 361 TVSAIQALHKLARESTK-NHDLLPIFNASAHILGI-----EVCKEHLNKNISIAIEKLVQ 414 T AI LH LA ++ + A A +LG+ E + + AIE L+ Sbjct: 379 TPKAIAELHALAAQALAGDRQAAGALKAGAGMLGLLQGDPEQWFKGDASDEDAAIEALIN 438 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ERL K + F+ AD +R QL+++G +LED K+ T W++ Sbjct: 439 ERLAARKARDFAKADALRDQLQAQGIVLEDTKD------GTSWRR 477 >gi|170079458|ref|YP_001736096.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7002] gi|229558794|sp|B1XND1|SYC_SYNP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|169887127|gb|ACB00841.1| cysteinyl-tRNA synthetase [Synechococcus sp. PCC 7002] Length = 472 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 172/493 (34%), Positives = 243/493 (49%), Gaps = 56/493 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F+ ++ + +RMY CG TVYD+ H+G+AR +++DV+ R L++ Sbjct: 1 MSLSLYNTLHRRSEPFEPLEANLVRMYCCGITVYDYCHLGHARTCLIWDVVRRYLQWSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKI+ RAR E ++ I K + + +D L Sbjct: 61 E--VHYIQNFTDIDDKILNRARAEK------SSMGAIAEKFIEAYFEDMEALHIQPADEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + LI ++ G AY + ++ + YG S RK+D+ + G Sbjct: 113 PRATHSLDGIQKLIHDLEQRGFAYASQGDVYYAVRKFDGYGKLSGRKLDDMQAGASGRVN 172 Query: 179 -VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 P+ K +P DF LWK + EP W+SPWG GRPGWHIECSAM LG+ DIH GG Sbjct: 173 EDPDAPKKHDPFDFALWKAAKAGEPAWDSPWGAGRPGWHIECSAMVRDRLGETIDIHVGG 232 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHHENEIAQS A + A W+HNG + +EG KMSKS GNFITI ELL Sbjct: 233 SDLIFPHHENEIAQSEAATG-QPLAKYWLHNGMVKVEGEKMSKSLGNFITIRELL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS------------TSKG 345 + + +RL +L HY +P+DFT + LT A T+ Sbjct: 287 --KKYDPMAVRLFILQAHYTKPLDFTDEALTAATKGWETLNDALLFGAEHLDTNNITADK 344 Query: 346 IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-----------------IFNAS 388 I + + NDLN + L +LA+E K ++L Sbjct: 345 GILAKFKAIVDNDLNFSGGLAILFELAKELKKEKNILVHEGKLQQNPQILASLWLTLKEL 404 Query: 389 AHILGIEVC-KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 A ILG K+ IE L+Q+R K ++ D +R L KG +L D Sbjct: 405 ADILGFVPETKQQAAGLTDAEIEDLIQQRKDARANKNYAEGDRLRDLLAEKGIVLVDKPG 464 Query: 448 PDNGQRMTRWKQK 460 +T W ++ Sbjct: 465 G-----ITEWHRE 472 >gi|218290036|ref|ZP_03494203.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218239870|gb|EED07058.1| cysteinyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 474 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 180/495 (36%), Positives = 248/495 (50%), Gaps = 65/495 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I +YN+L K Q ++P +R Y CGPTVY F H+GNAR +VFD + R L Y Sbjct: 1 MGIVLYNSLTGKKEPLQTLEPGKVRFYACGPTVYHFFHLGNARMFVVFDTIRRYLEYRGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V +V+N TDIDD+II+RA++ + + + +N + + +D +L T Sbjct: 61 E--VLFVQNFTDIDDRIIQRAQE------LGISPRELAEENIRYYFEDAGKLFIRPATVH 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T + +I IQ++I GHAYE N + FDTSS P YG S + ++ + G R+ + Sbjct: 113 PRVTECVDDIIRFIQDLIDRGHAYERNGSVYFDTSSFPEYGKLSHQSPEDMRAGYRIEVQ 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K +P DF LWK + P E W SPWG GRPGWHIECS M+ YLG+ DIH GG DLIF Sbjct: 173 DEKDDPTDFALWKAAKPGEEWWPSPWGPGRPGWHIECSVMNYLYLGEQIDIHAGGRDLIF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS + A W+HNG LN+ G KMSKS GNFI +LLE + Sbjct: 233 PHHENEIAQSEAHSG-KTFARYWLHNGTLNINGEKMSKSTGNFIMARDLLERR------- 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP------------------------ 338 +R +L HYR P+++T + L +AE LS+ Sbjct: 285 DPRAVRFFLLSAHYRNPLNYTEEALDQAEQALSRIDRLIRDLDHRAEALKAMRGALDRAD 344 Query: 339 -----QTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LL 382 Q + I A + A+ +D NT + A+ R + Sbjct: 345 EVPSTQGRSDVEQIRSAFIQAMDDDFNTADGMAAIFDGVRLVNTRLEEGGVTLGDLHLYR 404 Query: 383 PIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 +F +LGI + + + IE+L+ ER K + F+ AD IR QL +G +L Sbjct: 405 DLFVELLGVLGI---PKKEEERLEDEIERLIAERAEARKRRDFARADEIRDQLRHRGIVL 461 Query: 443 EDYKNPDNGQRMTRW 457 ED TRW Sbjct: 462 EDT------PYGTRW 470 >gi|163868002|ref|YP_001609206.1| cysteinyl-tRNA synthetase [Bartonella tribocorum CIP 105476] gi|187629795|sp|A9IRQ9|SYC_BART1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|161017653|emb|CAK01211.1| Cysteinyl-tRNA synthetase [Bartonella tribocorum CIP 105476] Length = 503 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 234/506 (46%), Positives = 312/506 (61%), Gaps = 51/506 (10%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M K+++ YNTL RK F IDP+ +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ Sbjct: 1 MMKELRFYNTLTRKKENFIPIDPTKVRLYVCGPTVYDYAHIGNARPLIVFDILFRLLRHV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG V Y RNITD+DDKI RA E+P++P+N+AI +T + QF +DT L CL PT Sbjct: 61 YGSDHVLYARNITDVDDKINARAACEYPNLPLNEAIRQLTERTYFQFQQDTIALGCLLPT 120 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGT 177 QPRAT H+ +M LI+ ++ GHAY+A N I+F SSI P+YG+F+ R +DE + G Sbjct: 121 SQPRATEHLEEMRALIERLLEKGHAYKAENHILFSISSIKNPPHYGAFANRSLDEMRAGA 180 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------- 227 R+ +K+ DF+LWK S EPGW+SP G GRPGWHIECSAMS L Sbjct: 181 RIDVAAYKREEMDFVLWKPSAEGEPGWKSPGGIPVLGRPGWHIECSAMSMAKLLAPYGGG 240 Query: 228 -------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 +FDIHGGGLDLIFPHHENEIAQSC A E+ AN W+HNGFL +EG+KMSK Sbjct: 241 LTCDDPIANIFDIHGGGLDLIFPHHENEIAQSCSAFGTERMANFWMHNGFLQVEGKKMSK 300 Query: 281 SNGNFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 S GNFITI +LE ++W R +ML THYREP+++T QRL ++ Sbjct: 301 SFGNFITIRSVLENNFLEFNGALAYEIKQNWAGLSARFSMLQTHYREPLNWTAQRLMQSS 360 Query: 332 ILLSKWPQTSTSK-------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +W + K I+ ++ AL +DLNT A L R+ K D L + Sbjct: 361 SELYRWYELLRDKKSMMENNEAIEDTLIDALSDDLNTPKA----FTLLRKFYKAGDALAL 416 Query: 385 FNASAHILGI---EVCKE-------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 N ++LG+ E KE S IE+ + ERL L+ K++ +AD IR + Sbjct: 417 ANGM-NLLGLLRQEWIKEIDCPLFIKKTSLDSKFIEQCIAERLRLIHNKEWGAADKIRNE 475 Query: 435 LESKGFILEDYKNPDNGQRMTRWKQK 460 L ++G +L+D K+P +G+R+T W+ K Sbjct: 476 LAAEGILLKDGKDPQSGKRITVWEIK 501 >gi|288818363|ref|YP_003432711.1| cysteinyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|288787763|dbj|BAI69510.1| cysteinyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|308751956|gb|ADO45439.1| cysteinyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] Length = 490 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 174/511 (34%), Positives = 250/511 (48%), Gaps = 76/511 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +KIYNTL K+ EF ++P + +Y CG TVYD +H+G+ R +IVFDV R L + Sbjct: 1 MSLKIYNTLSGKVEEFVPLNPPKVYIYTCGVTVYDDSHVGHGRSLIVFDVFRRYLEHLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V +VRN TD+DDKII RA++E N I ++ + D + + Sbjct: 61 K--VKFVRNFTDVDDKIINRAKEE------NTDFMTIANRYIASYYIDMESIKVKPADVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T H+ ++I +I+ ++ G+AYE+ ++ F + P YG S+R +E ++G RV Sbjct: 113 PRVTEHLQEIIDVIKGLVEKGYAYESGGDVYFSVKAFPEYGKLSKRSTEELEVGARVEPS 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K++P DF LWK + EP WESPWG GRPGWH EC AM +LGK DIHGGGLDL+F Sbjct: 173 EKKRDPLDFALWKSAKAGEPAWESPWGLGRPGWHTECVAMVFKHLGKTIDIHGGGLDLVF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQ+ + A W+HNG + + G+KMSKS GN++T+ E+ R + Sbjct: 233 PHHENEIAQAEALTG-KPFARYWMHNGLVTVGGQKMSKSLGNYVTLREV-------YRRY 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII--------------- 347 V+RL +L THYR P+DF+ +++ EA+ + ++ Sbjct: 285 HPDVLRLLVLFTHYRSPLDFSWEKMEEAKRAYERIRHAIEDLDMLKNLQVVEENKISQLY 344 Query: 348 ------DPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------------- 382 + A L D NT SA+ + L E K Sbjct: 345 EKVKEAEEAFFEDLSEDFNTPSALSHIFALVGELGKVKSRAISERRISRQDLSAYEFAVS 404 Query: 383 PIFNASAHILGI-----------EVCKEHLNKN---ISIAIEKLVQERLILLKMKKFSSA 428 I I G+ EV + L I+ LV R K F A Sbjct: 405 SILRHMRGIFGLFEDIYPEKPVREVVRRELEAGQVLDERLIDILVDVRNQARAEKVFKIA 464 Query: 429 DYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 DYIR +L+ G +LED T+W++ Sbjct: 465 DYIRDRLKEVGIVLEDT------PAGTKWRK 489 >gi|120602598|ref|YP_966998.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris DP4] gi|187629811|sp|A1VDQ5|SYC_DESVV RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120562827|gb|ABM28571.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris DP4] Length = 485 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 177/499 (35%), Positives = 244/499 (48%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++IYN+L R+ F P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ RN TD+DDKII+RA +E + K F +D RL L +P+ Sbjct: 60 -VTFARNFTDVDDKIIKRANEEGL------TSQQVAEKYIDTFYEDMDRLNVLRADIEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L + +I G AY + ++ F S P YG S R ID+ + G RV Sbjct: 113 ATGHILEMIALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W SPWG GRPGWHIECSAMS ++ DIHGGG DLIFP Sbjct: 173 EKEDPLDFALWKSAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A + W+HNGF+ ++ KMSKS GNF TI ++LE + Sbjct: 233 HHENEIAQTEAAL-DKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILE-------GYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------------S 341 V+R +L HYR PIDFT + EAE L + + + Sbjct: 285 PEVLRFFLLTKHYRSPIDFTFDSMDEAEKSLKRIYEALSLARTERGRSKWSATPLPADVT 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 +D A AL +DLNT +A+ + R + + L + Sbjct: 345 AEFDTLDRAFDEALEDDLNTAAALGHVFGTIRLVNRLLEDKNLRKSAETLALLERLDGLV 404 Query: 386 NASAHILGIEVCKEHL------------NKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG+ + + ++ L++ER + K F+ AD IR Sbjct: 405 AKWMKVLGVFGREPEAFLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L + G + D + Sbjct: 465 ELAALGIEVRDTPSGAVWD 483 >gi|188576215|ref|YP_001913144.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520667|gb|ACD58612.1| cysteinyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 474 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 192/494 (38%), Positives = 263/494 (53%), Gaps = 58/494 (11%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR YG Sbjct: 1 MSLRLHNNLTRRVEPFTPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRRYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + Y RNITD+DDKI A+ + I S IT + + +D L + P + Sbjct: 61 --ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPDIE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P AT HIPQ++ +I+ +I +GHAY A ++F SS +YG SRR DE G RV Sbjct: 113 PEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFEDYGKLSRRDPDEMLAGARVDVA 172 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL F Sbjct: 173 PYKRDPGDFVLWKPSSDELPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDLQF 232 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 PHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH------- 285 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP------------- 349 P +R A+L HYR+P+D++ + +A L + T ++ Sbjct: 286 PPEALRYALLSAHYRQPLDWSDGLIEQATNTLDRLYGTLRDLAALEACGSSGVEVSKTIP 345 Query: 350 -AVLSALYNDLNTVSAIQALHKLARESTKNHDLL----PIFNASAHILGIEV-------- 396 V SAL +DLNT A+ + +A E+ + L + + + Sbjct: 346 VEVESALQDDLNTPLALSVIASIASEARALRNELVHGGEPSARMSELHAVRAKLLGAGLA 405 Query: 397 -----------CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 + + I LVQER K K F+ AD IRKQL +G +LED Sbjct: 406 LGLLQQDPAAWFSRGTDADDDARITALVQERSAAKKAKDFARADAIRKQLADEGIVLEDT 465 Query: 446 KNPDNGQRMTRWKQ 459 + RWK+ Sbjct: 466 ------PQGVRWKR 473 >gi|295396934|ref|ZP_06807057.1| cysteine--tRNA ligase [Aerococcus viridans ATCC 11563] gi|294974827|gb|EFG50531.1| cysteine--tRNA ligase [Aerococcus viridans ATCC 11563] Length = 473 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 162/493 (32%), Positives = 241/493 (48%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL + EF+ + P +I MYVCGPTVY++ HIGNAR + FD + R Y + Sbjct: 2 LKIYNTLTNQKEEFKPLVPGSISMYVCGPTVYNYIHIGNARSTVAFDTVRRYFEYRGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDKII RA +E I K + F +DT L T PR Sbjct: 61 -VKYVSNFTDVDDKIINRANEEGL------TPEQIADKYIEAFYEDTDALNVKRATKNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 ++ +I + +++ AY + ++ + T YG S + ID+ + G Sbjct: 114 VVENMDDIIQFVADLVDKDFAYVVDGDVYYRTRKFEKYGQLSDQNIDDLRAGASERLEAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 + K++ DF LWK + P E W SPWG GRPGWHIECS M++ LG DIH GG DL Sbjct: 174 SQSKKEDVVDFALWKSAKPGEISWTSPWGEGRPGWHIECSVMATKLLGDTLDIHAGGHDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS AN W+HNGF+ + + KMSKS GNF+ ++L+ Sbjct: 234 TFPHHENEIAQSEAHTG-HTFANYWMHNGFVTMGDDDEKMSKSLGNFVLAHDLM------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------- 345 + V+R + HYR P+ F + + +A L+ + Sbjct: 287 -KQVDPQVVRFFLASAHYRSPLRFNEENIQDATNNLNNLKTAYANLNYRFEDAKAQLDND 345 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FN 386 ++ + A+ +D+NT + + +++L R+ + + F Sbjct: 346 AEVLAQIKALENEFIEAMDDDVNTPNGLTVVYRLMRDMNVYTNQKEVSIPVLEAFKESFT 405 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ + E + ++ I+ L+ ER K F+ AD IR QL+++G IL+D Sbjct: 406 ALLTIFGVTLSDEQ--ELLADDIQALIDERNQARADKNFARADEIRDQLKAEGIILDDT- 462 Query: 447 NPDNGQRMTRWKQ 459 + TRWK+ Sbjct: 463 -----AQGTRWKR 470 >gi|258543649|ref|YP_003189082.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256634727|dbj|BAI00703.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256637783|dbj|BAI03752.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03] gi|256640837|dbj|BAI06799.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07] gi|256643892|dbj|BAI09847.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22] gi|256646947|dbj|BAI12895.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26] gi|256650000|dbj|BAI15941.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32] gi|256652990|dbj|BAI18924.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656044|dbj|BAI21971.1| cysteinyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12] Length = 477 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 200/465 (43%), Positives = 275/465 (59%), Gaps = 31/465 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + ++++ R F IDP+++++Y CGPTVYD AHIGN R M+ DVL RLLR+ Y Sbjct: 33 LSLHDSQSRATVPFTPIDPAHVKVYYCGPTVYDLAHIGNLRAMLTADVLVRLLRHVY--P 90 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRNITD+DDKI RAR + I +T + T++F +D + L P +PR Sbjct: 91 RVTFVRNITDVDDKITARARAN------GEDIGSLTQRTTEEFHQDLASMNVLPPDIEPR 144 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT++I +M +I +I +GHAYEA ++F S P+YG+ S R +E + G RV + Sbjct: 145 ATHNIGEMQAMIARLIENGHAYEAEGHVLFSVGSFPSYGALSGRNPEELEAGARVEVAPY 204 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK P DF+LWK S +PGWESPWGRGRPGWHIECSAMS YLG FDIHGGG DL+FPH Sbjct: 205 KKAPGDFVLWKPSDADQPGWESPWGRGRPGWHIECSAMSHRYLGDSFDIHGGGSDLLFPH 264 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS C K AN W+HN L +EG KMSKS GNF+TI ++L PA Sbjct: 265 HENERAQSLCCFPHGKFANYWVHNAMLLVEGEKMSKSLGNFLTIRDVLA-------QAPA 317 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----KGIIDPAVLSALYNDLN 360 +RL +L HYR +++T L EA L ++ + + + + V+ AL +DLN Sbjct: 318 EALRLLLLGAHYRSTLNYTQAGLQEARKTLDRFYRALAAGPVPETDVPEGVMQALADDLN 377 Query: 361 TVSAIQALHKLARESTK-NHDLLPIFNASAHILGI---EVCKEHLNK--NISIAIEKLVQ 414 T AI LH LA ++ + A A +LG+ + + + AIE L+ Sbjct: 378 TPKAIAELHALAAQALAGDRQAAGALKAGAGMLGLLQGDPEQWFKGDACDEDAAIEALIN 437 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ERL K + F+ AD +R QL+++G +LED K+ T W++ Sbjct: 438 ERLAARKARDFAKADALRDQLQAQGIVLEDTKD------GTSWRR 476 >gi|295425605|ref|ZP_06818292.1| cysteine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] gi|295064621|gb|EFG55542.1| cysteine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] Length = 486 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 171/498 (34%), Positives = 259/498 (52%), Gaps = 62/498 (12%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ +K++NTL RK EF+ + P I MYVCGPTVY++ HIGNAR +I FD + R Y Sbjct: 10 EQAVKVFNTLSRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRG 69 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YV N TD+DDK+I AR E N + + + +++DT L T Sbjct: 70 YK--VKYVSNFTDVDDKMINEARAE------NTTVPKLAERYINAYLEDTEALNVEPATL 121 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV-- 179 PRAT+ I ++I ++ +I G+AYE + ++ + +YG S + I + + G Sbjct: 122 HPRATHEIKEIIAFVKELIAKGYAYEVDGDVYYRAKKFADYGKLSDQNIAQLEEGASEHI 181 Query: 180 --PEKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGG Sbjct: 182 NDTEQQRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGG 241 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLET 294 G DL FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T+++++ Sbjct: 242 GQDLEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDII-- 298 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------- 343 + V+R M YR I+++ L +A+++L ++ T T+ Sbjct: 299 -----KEVDPQVLRFFMASVQYRRQINYSEDNLKQAQVILERFKNTLTNINYRLEDDTAS 353 Query: 344 --KGIIDPA-------VLSALYNDLNTVSAIQALHKLARESTKNHDL-------LPIFNA 387 + A A+ +D N +A+ A+++L N +L L F Sbjct: 354 QEDAALKQAVAQTKLKFEQAMDDDFNVQNALTAIYELLPVVNANTNLANVDKTELKQFKK 413 Query: 388 S----AHILGIEVCKEHLNK--NISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 +I GI+ K K I+ LV++R K K ++++D IR+QL+ G Sbjct: 414 LLCQWLNIFGIDCDKLVATKASAEDEQIDALVKKRDEARKNKDWATSDQIREQLKKMGIT 473 Query: 442 LEDYKNPDNGQRMTRWKQ 459 ++D + TRW + Sbjct: 474 IQDT------PQGTRWTR 485 >gi|21231689|ref|NP_637606.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768188|ref|YP_242950.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] gi|24418691|sp|Q8P8J0|SYC_XANCP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|81305837|sp|Q4UVJ3|SYC_XANC8 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21113388|gb|AAM41530.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573520|gb|AAY48930.1| cysteinyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] Length = 457 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 192/477 (40%), Positives = 265/477 (55%), Gaps = 39/477 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I HAY A ++F +S +YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIASAHAYAAEGHVLFAVASFADYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGW+SPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSDDLPGWDSPWGRGRPGWHIECSAMAATHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGAVFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVLSA 354 P +R A+L HYR+P+D++ + +A+ L + T + +I V +A Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLHDVAASAVIPAPVEAA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE------------VCKEHLN 402 L +DLNT A+ + ++A E+ K +D A +LG + Sbjct: 346 LDDDLNTPQALAEVARIAGEARKANDAADRARLKAELLGAGLALGLLQQEPAAWFSRGAD 405 Query: 403 KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I LV ER K K F+ AD IR+QL +G +LED + RWK+ Sbjct: 406 AGDDARIAALVDERSAAKKAKDFARADAIRQQLADEGIVLEDT------AQGVRWKR 456 >gi|78066853|ref|YP_369622.1| cysteinyl-tRNA synthetase [Burkholderia sp. 383] gi|109894879|sp|Q39EY8|SYC2_BURS3 RecName: Full=Cysteinyl-tRNA synthetase 2; AltName: Full=Cysteine--tRNA ligase 2; Short=CysRS 2 gi|77967598|gb|ABB08978.1| cysteinyl-tRNA synthetase [Burkholderia sp. 383] Length = 465 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 176/484 (36%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + D + L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIGAMHDDESALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATEFIPQMLGMIETLETNGYAYQATDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEDPEGTSWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEADTLALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDFNTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 SGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLETGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|332523431|ref|ZP_08399683.1| cysteine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314695|gb|EGJ27680.1| cysteine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176] Length = 447 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 161/468 (34%), Positives = 244/468 (52%), Gaps = 39/468 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+T+ R + +F + + I MYVCGPTVY++ HIGNAR + FD + R Y Sbjct: 2 IKIYDTMTRSLRDFVPLKENQISMYVCGPTVYNYIHIGNARSAVAFDTIRRYFEYSGYN- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + + + K + F+ DT +L + PR Sbjct: 61 -VNYISNFTDVDDKIIKAAAES------GISPKALADKFIEAFMADTKQLGIKPASQNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ ++I +Q +I G AYE+ ++ F + NY + + + + ++G E Sbjct: 114 VMDYMGEIIAFVQELIQKGFAYESAGDVYFRVTKSENYARLANKTLADLEVGASGRIDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P E W+SPW +GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 ATLKEDPLDFALWKSAKPGEIFWDSPWSKGRPGWHIECSVMATEILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS ++ AN W+HNGF+N++ KMSKS GNF+T++++LE S Sbjct: 234 FPHHTNEIAQSEAKTG-QRFANYWMHNGFVNVDNEKMSKSLGNFVTVHDMLE-------S 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------STSKGIIDPAV 351 V+R + YR+PI+FT + + +AE+ L T + + Sbjct: 286 VDGQVLRFFLATQQYRKPINFTEKAIRDAEVNLKYLKNTYLLPLKTVSDTNRLFDFKKSF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 A+ +D N + I + A+ H + F + GI +E ++ Sbjct: 346 KEAMDDDFNAANGITVIFDFAKWINSGHYDQTIKTAFGEMLEVFGIVFQEEVIDS----E 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +E L+ +R + F+ AD IR QL ++G L D K+ G R TR Sbjct: 402 VEALIAQRQTARAARDFAKADSIRDQLAAQGIKLLDTKD---GVRWTR 446 >gi|30316152|sp|Q8DHW6|SYC_THEEB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 486 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 165/503 (32%), Positives = 244/503 (48%), Gaps = 64/503 (12%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R++ F + P + +Y CG TVYD+ H+G+AR + +DVL R L + Sbjct: 1 MPLHLYNTLSRRLEPFSPLHPERVTIYACGVTVYDYCHLGHARSYVAWDVLRRYLTFLGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V YV+N TDIDDKI+ RA + ++ ++ + + +D L L + Sbjct: 61 --TVHYVQNFTDIDDKILRRA------YENGETMATVSDRYIAAYHQDMAALNILPASAY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT IP++I LIQ ++ G+AY A ++ + + P+YG S R++++ G Sbjct: 113 PRATEVIPEIINLIQGLLDRGYAYVAGGDVYYAVAQFPSYGKLSGRQLEQLMAGASGRIE 172 Query: 179 VPEKYHKKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 E+ K++P DF LWK + P E WE+PWG+GRPGWHIECSAM G DIH Sbjct: 173 EEEEQRKRHPLDFALWKAAKPEEMSVYHPWEAPWGKGRPGWHIECSAMVRQAFGATVDIH 232 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GG+DLIFPHHENEIAQS + A W+HNGF+ + KMSKS GNF TI +LL Sbjct: 233 CGGMDLIFPHHENEIAQSEAVT-QQPLARFWLHNGFVTVNTEKMSKSLGNFTTIRDLL-- 289 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------ 348 + +RL +L YR+P+DFT + LT A + I Sbjct: 290 ----AQGLDPMALRLLVLQAQYRKPLDFTPEALTAAAKGWQTLGEALHLHQQIPLPPIDA 345 Query: 349 ---------PAVLSALYNDLNTVSAIQALHKLARESTKNHDLL----------------- 382 A A+ DLNT +A+ + +LA+ + Sbjct: 346 AEVRSHPKTEAFCQAMDEDLNTAAALAVIFELAKTLNREQHRYLHGGGWGRSPAEVSRDW 405 Query: 383 PIFNASAHILGIEVCKEHLN----KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 A +LG+E +E + I+ L+ R + K ++ +D +R L ++ Sbjct: 406 HTLVTLAQVLGLEAKEESNPALTVELTDEEIQALIAARTAARQAKNYTESDRLRDLLLAQ 465 Query: 439 GFILEDYKNPDNGQRMTRWKQKP 461 G L D K+ T W + P Sbjct: 466 GVKLVDQKDGT-----THWFRVP 483 >gi|331006994|ref|ZP_08330231.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC1989] gi|330419182|gb|EGG93611.1| Cysteinyl-tRNA synthetase [gamma proteobacterium IMCC1989] Length = 478 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 187/498 (37%), Positives = 263/498 (52%), Gaps = 64/498 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F ID IR+YVCG TVYD+ HIG+AR +I FDV+ R LR Sbjct: 3 LTIYNTLAREKVIFTPIDAGKIRLYVCGMTVYDYCHIGHARVLISFDVIVRFLRSQG--W 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKII RA + ++ I+ + +D L L P +PR Sbjct: 61 DVEYVRNITDVDDKIINRAEEN------GESSEILAQRFIDAMHEDERALNILPPNQEPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT H+ +I +++ +I +AY A NN++ + NYG S +K DE G RV Sbjct: 115 ATAHMDNIIAMVKTLINKNYAYVASNNDVYYRVGKFGNYGQLSGKKPDELMAGARVEVGD 174 Query: 184 HKKNPADFILWKRSTPMEP---------GWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 K++P DF LWK P WESPWG GRPGWHIECSAMS LG FDIH Sbjct: 175 IKEDPRDFALWKAIDPSNVVGDGKNAPVSWESPWGAGRPGWHIECSAMSKSCLGNSFDIH 234 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG DL FPHHENEIAQS A+ + N W+H G + ++G KMSKS GNF TI ++L Sbjct: 235 GGGPDLPFPHHENEIAQSEAANGCK-YVNYWLHAGAVRVDGEKMSKSLGNFFTIRDVL-- 291 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---- 350 + + + VIR ++ +HYR I+++ L EA+ L ++ QT ++PA Sbjct: 292 -----KKYHSEVIRYLIVNSHYRSSINYSEDNLIEAKSGLDRFYQTLKHYTDVEPAAIES 346 Query: 351 ---------VLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFNASAHILG 393 + ++ +D NT A+ +++L + ++ K L+ A A+ILG Sbjct: 347 LSDSVYYQHFVDSMNDDFNTRIALSGMYELIKTINTVAVDDAEKAKKLVAELKAMANILG 406 Query: 394 IEVCK--EHLNKNIS---------IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 + E L IE L+ +R+ K K++ AD IR+QL+ +G +L Sbjct: 407 VLQADPTEFLQAEDKTSQVVGLSIDVIETLISQRIQAKKDKQYQRADDIRQQLDDQGVLL 466 Query: 443 EDYKNPDNGQRMTRWKQK 460 ED + T W++K Sbjct: 467 EDSR------EGTAWRRK 478 >gi|94310030|ref|YP_583240.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] gi|93353882|gb|ABF07971.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] Length = 491 Score = 540 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 177/481 (36%), Positives = 254/481 (52%), Gaps = 45/481 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++ IYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD+++R LR Sbjct: 31 QQLNIYNTLAREKQPFVPIEPGKVRMYVCGMTVYDYCHVGHARVMVVFDMVHRWLRAAGY 90 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYV+NITDIDDKII RA + + I +T++ Q +D T L + P ++ Sbjct: 91 D--VTYVQNITDIDDKIIRRAAEN------GETIGQLTTRFIQYMHEDATALGVIRPDYE 142 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I+ + G AY+A + ++ + P YG S + +++ + G RV Sbjct: 143 PRATEYVPQMLNIIEKLEAKGLAYQATDGDVNYSVRKFPGYGKLSGKSLEDLRAGERVNA 202 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W+S WG GRPGWHIECSAMS LG+ FDIHGGG Sbjct: 203 NDAKQDPLDFVLWKSAKATEPPESKWDSKWGSGRPGWHIECSAMSCTLLGEHFDIHGGGA 262 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A N+W+HNGF+ + KMSKS GNF TI ++L Sbjct: 263 DLQFPHHENEIAQSEGASG-RPFVNMWMHNGFVRVNDEKMSKSLGNFFTIRDVL------ 315 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + + A V+R +L HYR P++++ L +A L++ + Sbjct: 316 -KEYDAEVVRFFILRAHYRSPLNYSDAHLDDARHALTRLYTALKETQPGGCAVDWEESHA 374 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--FNASAHILGIEVCKEH------ 400 A+ +D NT A+ L LA E + + A LG+ H Sbjct: 375 KRFAEAMNDDFNTPIAMSVLFDLASEVNRTGSVAAAHQLKALGGTLGLLERDPHTFLQGG 434 Query: 401 --LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE + R + F+ AD IR +L G +LED T W+ Sbjct: 435 HVAGSLSGEQIEAQIAARRAAKAARNFAEADRIRAELLEAGVVLEDKPGGA-----TEWR 489 Query: 459 Q 459 + Sbjct: 490 R 490 >gi|116493238|ref|YP_804973.1| cysteinyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] gi|122265298|sp|Q03E41|SYC_PEDPA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116103388|gb|ABJ68531.1| cysteinyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] Length = 470 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 168/492 (34%), Positives = 249/492 (50%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNT+ R F+ + + MYVCGPTVY++ HIGNAR +I FD + R Y E Sbjct: 2 IKIYNTMSRTKETFKPLVDHKVSMYVCGPTVYNYIHIGNARSIIAFDTIRRYFEYRGFE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDK+I AR++ + + + F +D + T PR Sbjct: 61 -VKFVSNFTDVDDKMINSAREQ------GITVPELADRYIGAFKEDVQAVNVEPATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT----RVP 180 AT +I +I I +++ G AY + ++ + YG+ S + IDE + G Sbjct: 114 ATENIDDIIAFIADLMDKGFAYAVDGDVYYRARKFSKYGALSHQNIDELEQGASQHVDDE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + E W++PWG GRPGWHIECS MS+ YLG FDIHGGG DL Sbjct: 174 ETARKEDPIDFALWKAAKGDEIAWKAPWGTGRPGWHIECSVMSTKYLGDTFDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS ++ A W+HNGF+ + + KMSKS GNF+T+++L+ Sbjct: 234 QFPHHENEIAQSEAKTG-KQFARYWMHNGFVTVGDDNEKMSKSLGNFVTVHDLV------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 + V+R M T YR PI +T L +A+ L K Sbjct: 287 -QKINPQVLRFLMSTTQYRRPIQYTQASLQDAKNNLEKLQNAFINLNYRLQGAQGAADAT 345 Query: 341 -STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 + ++ ++A+ +D N + I +++ AR + LL + Sbjct: 346 VAEQAAQLETDFITAMDDDFNAQNGITVVYEFARLINVYSEKTAVNAEQINQLLTSYAKM 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A + GIE+ + +N I++LV++R + F ++D +R QL+ G ILED Sbjct: 406 AAVFGIELKQI---ENDDAEIDELVKQRDQARADRDFETSDRLRNQLKEMGVILEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 460 ---PQGTRWRKK 468 >gi|229009599|ref|ZP_04166825.1| Cysteinyl-tRNA synthetase [Bacillus mycoides DSM 2048] gi|229053936|ref|ZP_04195370.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH603] gi|229131097|ref|ZP_04260009.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|229165078|ref|ZP_04292873.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH621] gi|228618341|gb|EEK75371.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH621] gi|228652310|gb|EEL08235.1| Cysteinyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|228721354|gb|EEL72875.1| Cysteinyl-tRNA synthetase [Bacillus cereus AH603] gi|228751621|gb|EEM01421.1| Cysteinyl-tRNA synthetase [Bacillus mycoides DSM 2048] Length = 449 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 164/472 (34%), Positives = 242/472 (51%), Gaps = 57/472 (12%) Query: 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI 79 ++ + ++MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+ Sbjct: 2 PLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKL 59 Query: 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNI 139 I+ A + + + + I + + + +D T L C T PR T ++ +I IQ + Sbjct: 60 IKAANE------LGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQEL 113 Query: 140 ILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP 199 + G+AYE+ ++ F T YG S + I + + G R+ K++P DF LWK + Sbjct: 114 VNKGYAYESEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKE 173 Query: 200 MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIE 259 E WESPWG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + Sbjct: 174 GEIFWESPWGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-K 232 Query: 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 A W+HNG++N+ KMSKS GNFI +++++ + + +IR ML HYR P Sbjct: 233 TFARYWMHNGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHP 285 Query: 320 IDFTVQRLTEAEILLSKWPQT---------------------STSKGIIDPAVLSALYND 358 I+F+ L L + A A+ +D Sbjct: 286 INFSEDLLQSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEMEKFQVAFEEAMDDD 345 Query: 359 LNTVSAIQALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISI 407 NT +AI L+ +A + + + ILG+E+ +E L + Sbjct: 346 FNTANAITELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFSILGLELAQEEL---LDE 402 Query: 408 AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 IE L+Q+R+ + + F+ +D IR L+ + ILED + TRWK+ Sbjct: 403 EIEALIQKRIEARQNRDFALSDQIRDDLKGRNIILEDT------AQGTRWKR 448 >gi|90423589|ref|YP_531959.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] gi|109894931|sp|Q216P6|SYC_RHOPB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|90105603|gb|ABD87640.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] Length = 488 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 217/496 (43%), Positives = 296/496 (59%), Gaps = 55/496 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++Y+TL ++ +F +DPSN+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 3 LRLYDTLTKEKRDFAPLDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYGPD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITD+DDKI +RA ++ P +P+N+AI +T + +QF D L CL PT +PR Sbjct: 63 HVKYVRNITDVDDKINDRATRDFPGLPLNEAIRKVTEQTEKQFHDDVDALGCLRPTIEPR 122 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-------PNYGSFSRRKIDEQKMGT 177 AT HI +M +I ++ G AY A + ++F ++ P YGS + R +DE G Sbjct: 123 ATEHIGEMRSIIDRLVEGGFAYVAEDHVLFSPQAMNAADGILPRYGSLANRSLDEMIAGA 182 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYLGKVFDIH 234 RV +K++ DF+LWK S P EP W SP G +GRPGWHIECSAM+ +LG+ FDIH Sbjct: 183 RVDVAPYKRDVTDFVLWKPSKPGEPSWPSPAGIATQGRPGWHIECSAMAWKHLGEKFDIH 242 Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 GGG+DL+FPHHENE+AQSCCA ++ A W+HNGFL +EG KMSKS GNF+TI++ + Sbjct: 243 GGGIDLVFPHHENEVAQSCCAFHTDRMATTWMHNGFLQVEGEKMSKSLGNFLTISDQRD- 301 Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----A 350 W V+RL ML THYR+PID+T L+E L +W + S DP Sbjct: 302 ------QWGPAVLRLNMLKTHYRQPIDWTQHNLSETGRELDRWFEFLESASGGDPNDAND 355 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI--- 407 V+SAL +DLNT +AI AL + KN + +LGI + +E + + Sbjct: 356 VMSALADDLNTSAAITALR--VQFKNKNS---AALRSGLDLLGIPIGREFIQGRKHVRLY 410 Query: 408 -------------------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFIL 442 I++L+ R K F +D IR QL + G +L Sbjct: 411 AEGAFVAAGGGTATFSTASSSVERSDIQQLIDARAAARARKDFKESDRIRDQLAAMGVVL 470 Query: 443 EDYKNPDNGQRMTRWK 458 +D K+ D G+ T W+ Sbjct: 471 KDGKDAD-GKPTTTWE 485 >gi|159044247|ref|YP_001533041.1| cysteinyl-tRNA synthetase [Dinoroseobacter shibae DFL 12] gi|187629812|sp|A8LLR2|SYC_DINSH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157912007|gb|ABV93440.1| cysteinyl-tRNA synthetase [Dinoroseobacter shibae DFL 12] Length = 458 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 204/456 (44%), Positives = 271/456 (59%), Gaps = 25/456 (5%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++K+ NT R+ F IDP N+RMYVCGPTVYD AH+GNARP +VFD+L+R+LR YG Sbjct: 4 TELKLTNTKTRRKEVFTPIDPDNVRMYVCGPTVYDRAHLGNARPAVVFDMLFRVLREVYG 63 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITD+DDKI RA + +I IT + T +++D L L PTH Sbjct: 64 PEHVTYVRNITDVDDKINARAAE------TGRSIREITDETTGWYLEDMAALGTLPPTHV 117 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PRAT +IPQM+ +I+ +I GHAY A ++FD S YG+ S R +D+ G RV Sbjct: 118 PRATEYIPQMVAMIETLIARGHAYVAEGHVLFDVRSYGAYGALSGRSVDDMIAGARVEVA 177 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +K++P DF+LWK S PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL F Sbjct: 178 PYKRDPMDFVLWKPSEAGLPGWDSPWGRGRPGWHIECSAMSHELLGESFDIHGGGNDLQF 237 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA A +W+HN L +EG+KMSKS GNF T+ +LL+ + Sbjct: 238 PHHENEIAQSCCAHPEGGFAKVWMHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGV 291 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---KGIIDPAVLSALYNDL 359 P VIR L THY +P+D+T ++ EA +L KW P+V++AL +DL Sbjct: 292 PGEVIRFVFLGTHYSKPMDWTERKRDEAMAVLRKWRAAVAGTRPAPAAAPSVMAALVDDL 351 Query: 360 NTVSAIQALHKLARESTKNHDLLPIFNASAHILGIE-----VCKEHLNKNISIAIEKLVQ 414 NT AI LH+L R+ LP ASA ++G+ ++S +L + Sbjct: 352 NTPGAIAELHQLYRDGN-----LPGLLASAQLMGLLSDEMGGWDSSPQVDLSELAARLAE 406 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 R + K F+ D ++ L + G + K Sbjct: 407 VREAAIGTKDFTQVDRMKAALIAAGVEVRMSKAGVE 442 >gi|312868029|ref|ZP_07728233.1| cysteine--tRNA ligase [Streptococcus parasanguinis F0405] gi|311096433|gb|EFQ54673.1| cysteine--tRNA ligase [Streptococcus parasanguinis F0405] Length = 447 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 172/465 (36%), Positives = 244/465 (52%), Gaps = 33/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I G+AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMDDIIRFVADLIEKGYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L ++ Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDAL-------KT 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +DPA Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGEVDPADLQGFVDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 + A+ D+N + I + +LA+ H + +A +L + + + IE Sbjct: 346 IVAMDEDINAANGITVVFELAKWINSGHYNQDVKDALTKML-EVFGVVFVEEVLDADIEA 404 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+ ER K F+ AD IR +L ++G L D K G R TR Sbjct: 405 LIAERQEARAKKDFARADAIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|58040207|ref|YP_192171.1| cysteinyl-tRNA synthetase [Gluconobacter oxydans 621H] gi|61216109|sp|Q5FQ31|SYC_GLUOX RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58002621|gb|AAW61515.1| Cysteinyl-tRNA synthetase [Gluconobacter oxydans 621H] Length = 452 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 199/464 (42%), Positives = 267/464 (57%), Gaps = 30/464 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++++T R F +DP N+R+Y CGPTVYD AH+GN R M+ D+L RLLR Y Sbjct: 9 LRLHDTHLRDKRPFTPLDPENVRVYFCGPTVYDRAHLGNLRAMMCADILIRLLRTMY--P 66 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN+TD+DDKI RA++ + IS +T + TQ F +D L L P +PR Sbjct: 67 RVTYVRNVTDVDDKINARAKEN------GEDISALTERTTQAFHEDLASLFILPPDIEPR 120 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT+HI M+ +I ++ +GHAY A ++F + P+YG S R +D+ G RV + Sbjct: 121 ATHHIDDMLEMIGRLVENGHAYVAEGHVLFAVRNFPSYGELSGRSLDDMIAGARVEVAPY 180 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK S P PGW+SP+GRGRPGWHIECSAMS YLG+ FDIHGGG DL+FPH Sbjct: 181 KRDPGDFVLWKPSEPDLPGWDSPYGRGRPGWHIECSAMSHRYLGESFDIHGGGDDLLFPH 240 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS C K A W+HNG L G KMSKS GNF TI E+L+ PA Sbjct: 241 HENERAQSMCCYPHGKFATHWVHNGMLLSNGEKMSKSLGNFFTIREVLDRS-------PA 293 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----IIDPAVLSALYNDL 359 +RL L HYR +DF+ ++L EA +L + + + AV+ AL +DL Sbjct: 294 EPLRLLYLGAHYRSTLDFSWEKLEEARRVLDRLYRALERGNAQPGTALPAAVMDALCDDL 353 Query: 360 NTVSAIQALHKLARESTKNHDLLP----IFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 NT AI ALH LA + + + + + + + AIEKL++E Sbjct: 354 NTPLAIAALHPLADAAMQGDQDAASSLLAAGKLLGLFNVTPAEWFQSGVDASAIEKLIEE 413 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 RL K + F+ AD IR QL + G LED G T W++ Sbjct: 414 RLAARKSRDFARADAIRAQLAADGITLED------GPGGTTWRK 451 >gi|109894929|sp|Q21YS0|SYC_RHOFD RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS Length = 459 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 174/472 (36%), Positives = 245/472 (51%), Gaps = 38/472 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R I + P ++RMYVCG TVYD H+G+AR M+ FDV+ R L+ Sbjct: 1 MSLRIYNTLSRAIEPLIPLQPGHVRMYVCGMTVYDLCHLGHARAMVAFDVVQRWLKVSGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRN+TDIDDKII+RA + ++I +T + +D L PTH+ Sbjct: 61 --RVTYVRNVTDIDDKIIKRA------LENGESIRALTERMVDALHQDADALGIERPTHE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +PQM+ LI + G AY+A N ++ + P YG S + +DE + G RV Sbjct: 113 PRATEFVPQMLSLIGRLEQKGLAYQAVNGDVNYAVRKFPGYGKLSGKSLDELRAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K +P DF+LWK + P EP W+S +G+GRPGWHIECSAM LG+ DIHGGG Sbjct: 173 ADGKDDPLDFVLWKTAKPNEPLDAKWDSVYGQGRPGWHIECSAMCGQMLGETVDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A+IW+HNGF+ + KMSKS GNF TI ++L Sbjct: 233 DLQFPHHENEIAQSEGATG-KPLASIWMHNGFVTRDNEKMSKSLGNFFTIRDILAR---- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----------II 347 + A R ++ HYR ++ + L +A L + Sbjct: 288 ---YDAETTRFFIIRAHYRSALNHSDAHLDDARNSLKRLYTALDLVAPEPLLEIDWRQPF 344 Query: 348 DPAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI-----EVCKEH 400 +A+ D T A+ + +LA E K D L + A LG+ +V + Sbjct: 345 AARFKAAMDEDFGTPEAVAVMFELATEVNKTRDPKLAGLLKALGACLGLLQGDPKVFLQA 404 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 + +I L+ +R K F+ AD IR+ L ++G +L+D + Sbjct: 405 GATLDAASIAALIAQRTAAKAAKNFAEADRIRQDLLARGIVLKDSAAGTVWE 456 >gi|238853164|ref|ZP_04643551.1| cysteine--tRNA ligase [Lactobacillus gasseri 202-4] gi|238834218|gb|EEQ26468.1| cysteine--tRNA ligase [Lactobacillus gasseri 202-4] Length = 472 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 250/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRQKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 62 -VKYVSNFTDVDDKMINEARKEHTTVG------ELADRYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIQEIIDFVQDLIDKGFAYEVDGDVYYRAKKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 175 EQSKKEDPIDFALWKAQKEDDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKKKEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 289 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLMDEQETLED 346 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN----------- 386 + A+ +D N +A+ ++ L + + Sbjct: 347 SILRDNLTQAKAEFIEAMDDDFNVQNALSIMYDLTSNLNTHLQKNQVDKPALKKAKKLLL 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ ++ IE +V +R K K ++ +D +R +L++KG ++ED Sbjct: 407 AWLEIFGVSFNEKQTEN--DDEIEVMVAKRDEARKNKNWAESDRLRDELQAKGIVIEDT- 463 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 464 -----PQGTRWHR 471 >gi|116629010|ref|YP_814182.1| cysteinyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|282852713|ref|ZP_06262055.1| cysteine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311111194|ref|ZP_07712591.1| cysteine--tRNA ligase [Lactobacillus gasseri MV-22] gi|122273992|sp|Q045X8|SYC_LACGA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|116094592|gb|ABJ59744.1| cysteinyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|282556455|gb|EFB62075.1| cysteine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311066348|gb|EFQ46688.1| cysteine--tRNA ligase [Lactobacillus gasseri MV-22] Length = 472 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 250/493 (50%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRQKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + + + F++DT L T PR Sbjct: 62 -VKYVSNFTDVDDKMINEARKEHTTVG------ELADRYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIQEIIDFVQDLIDKGFAYEVDGDVYYRAKKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 175 EQSKKEDPIDFALWKAQKDDDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 289 --KQIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLMDEQETLED 346 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN----------- 386 + A+ +D N +A+ ++ L + + Sbjct: 347 SILRDNLTQAKAEFIEAMDDDFNVQNALSIMYDLTSNLNTHLQKNQVDKPALKKAKKLLL 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 A I G+ ++ IE +V +R K K ++ +D +R +L++KG ++ED Sbjct: 407 AWLEIFGVSFNEKQTEN--DDEIEVMVAKRDEARKNKNWAESDRLRDELQAKGIVIEDT- 463 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 464 -----PQGTRWHR 471 >gi|300362340|ref|ZP_07058516.1| cysteine--tRNA ligase [Lactobacillus gasseri JV-V03] gi|300353331|gb|EFJ69203.1| cysteine--tRNA ligase [Lactobacillus gasseri JV-V03] Length = 472 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 253/493 (51%), Gaps = 62/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++NTL R+ EF+ + + MYVCGPTVY++ HIGNAR +I FD + R Y + Sbjct: 3 MKVFNTLTRQKEEFKPLVAGKVSMYVCGPTVYNYIHIGNARSVIAFDTIRRYFEYRGYD- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+EH ++ + ++ + F++DT L T PR Sbjct: 62 -VKYVSNFTDVDDKMINEARKEHTTVG------ELANRYIKAFMEDTEALNIEPATLHPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q++I G AYE + ++ + PNYG S + I E + G Sbjct: 115 ATHEIKEIIDFVQDLIDKGFAYEVDGDVYYRAKKFPNYGQLSDQNIAELEEGASEHINEE 174 Query: 181 EKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK E W+SPWG+GRPGWHIECS MS+ YLG+ DIHGGG D Sbjct: 175 EQNKKEDPIDFALWKAQKEDDEIAWDSPWGKGRPGWHIECSVMSTKYLGETIDIHGGGQD 234 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + KMSKS NF+T++++L Sbjct: 235 LEFPHHENEIAQSEAKTG-KKFVNYWMHNGFVTVGKKQEKMSKSLHNFVTVHDIL----- 288 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI----------- 346 + V+R M YR PI+++ L +AE +L ++ T + Sbjct: 289 --KEIDPQVLRFYMSSVQYRRPINYSEDGLKQAETVLKRYQNTLRNLDARLADEQEPLED 346 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN----------- 386 + A+ +D N +A+ ++ LA + + Sbjct: 347 NTLRDNLTQAKAEFIEAMDDDFNVQNALSIMYDLASNLNTHLQKDQVDKPALKKAKKLLL 406 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ ++ + IE +V +R K K ++ +D +R +L++KG ++ED Sbjct: 407 DWLEIFGVSFNEKQADD--DDEIEAMVAKRDEARKNKNWAESDRLRDELQAKGIVIEDT- 463 Query: 447 NPDNGQRMTRWKQ 459 + TRW + Sbjct: 464 -----PQGTRWHR 471 >gi|134094511|ref|YP_001099586.1| cysteinyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|166200149|sp|A4G4M2|SYC_HERAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|133738414|emb|CAL61459.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Herminiimonas arsenicoxydans] Length = 462 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 252/479 (52%), Gaps = 45/479 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNTL R+ F IDP +RMYVCG TVYD+ HIG+AR M+VFD++ R LR + Sbjct: 4 LKIYNTLAREKQLFTPIDPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASGFD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII+RA + + IS +T + +D L P H+PR Sbjct: 63 -VTYVRNITDIDDKIIKRAAEN------GETISQLTQRFIDAMDEDAAALGVQKPDHEPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 ATN++PQM+ LI + +G AY A+ ++ + YG S + +D+ + G RV Sbjct: 116 ATNYVPQMLGLIDMLERNGLAYKAADGDVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNT 175 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K +P DF+LWK S EP W S WG GRPGWHIECSAM+ LG+ FDIHGGG DL Sbjct: 176 GKHDPLDFVLWKSSKENEPEEVKWSSKWGSGRPGWHIECSAMACELLGEQFDIHGGGADL 235 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 236 QFPHHENEIAQSEGASG-HTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLE------- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PA 350 + A V+R +L HYR ++++ L +A L++ Sbjct: 288 KFDAEVVRFFILRAHYRSQLNYSDAHLDDARNALTRMYTALKDVAPDHLPLDMTEAHAVR 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI--EVCKEHL----- 401 + A+ +D NT AI L +LA E + L A I+G+ ++ L Sbjct: 348 FIDAMNDDFNTPLAIAVLFELANEINREKSPVLARQLIGLAGIVGLLQRPAQQFLHAGLA 407 Query: 402 -NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + I + R K K F+ AD IR L KG ILED +T W++ Sbjct: 408 GADEMETLIIGQIAARADAKKAKNFAEADRIRAALLEKGIILEDKPGG-----LTEWRR 461 >gi|109898207|ref|YP_661462.1| cysteinyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] gi|109700488|gb|ABG40408.1| cysteinyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] Length = 464 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 258/484 (53%), Gaps = 51/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R+ F + S + +YVCG TVYD +H+G+AR + FD++ R LR+ E Sbjct: 2 LHIYNTLTRQKELFTPLHESKVGLYVCGITVYDLSHMGHARTYLSFDLMVRYLRHKGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII+RA + + S +T + D + LAP +PR Sbjct: 61 -VNYVRNITDIDDKIIQRANEN------GETTSELTERTIAMMHDDFAAIGLLAPDIEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T H+P++I +I+ +I GHAY+A + +++FD SS +YG S++ +D+ MG+RV Sbjct: 114 VTTHMPEIIAIIERLIQRGHAYQAKSGDVLFDVSSYADYGKLSKQDLDQLNMGSRVDVDS 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAM+ +LG+ FDIHGGG DLIFP Sbjct: 174 DKDDPMDFVLWKTAKPGEPSWQSPWGDGRPGWHIECSAMNQKHLGEHFDIHGGGSDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N W+H G + ++ KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCAYDT-PYVNYWVHAGMVQVDSEKMSKSLGNFFTLRDVL-------QQHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------AVLS 353 A +R ++ HYR + ++ +T+A L + + Sbjct: 286 AETLRYFLMSAHYRSQLSYSQSNITQARSALERLYTSLRDVKANTQVDMHSADYLTRFDK 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNH-----------DLLPIFNASAHILGIE------- 395 A+ +D NT A+ L +A+E + DL + +LGI Sbjct: 346 AMDDDFNTPEAMAVLFDVAKELNRAKAEGQEGHERASDLAGVLINLGKVLGILQRSPSEY 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + E + + IE L++ R K +++AD R L + ILED G T Sbjct: 406 LQGEQQDDDEVAEIEGLIKARNDARAAKDWAAADAARDGLNALNIILED------GPSGT 459 Query: 456 RWKQ 459 W++ Sbjct: 460 TWRK 463 >gi|167563301|ref|ZP_02356217.1| cysteinyl-tRNA synthetase [Burkholderia oklahomensis EO147] gi|167570473|ref|ZP_02363347.1| cysteinyl-tRNA synthetase [Burkholderia oklahomensis C6786] Length = 465 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 181/485 (37%), Positives = 253/485 (52%), Gaps = 50/485 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F P +RMYVCG TVYD+ HIG+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQPGEVRMYVCGITVYDYCHIGHARMVVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +TS+ T D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------VENGETIRSLTSRFTDAMNADFDALGVERPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + YG S + +++ + G RV Sbjct: 114 PRATEFIPQMLGMIEKLEANGYAYQAKDGDVNYSVRKFAGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ P EP W+S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKPEEPVGASWDSKYGLGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDSEKMSKSLGNFFTIREVLE----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 ++ A V+R ++ THYR P++++ L +A L++ T+ D A Sbjct: 288 --NFDAEVVRFFIVRTHYRSPLNYSDVHLDDARASLTRLY-TALKDATPDSAPLDWNEAH 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD-------------LLPIFNASAHILGI 394 +A+ +D NT A+ L +LA E + D L + L Sbjct: 345 ARRFAAAMNDDFNTPVAVAVLFELATEVNRTRDPALARQLGRLAGLLGLLGREPREFLQQ 404 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRM 454 IE + R+ + K ++ AD IR +L G LED Sbjct: 405 AAGTPRAGALEPEEIEAKIAARVAAKRAKNYAEADRIRAELLEAGIALEDKPGGS----- 459 Query: 455 TRWKQ 459 T W++ Sbjct: 460 TEWRR 464 >gi|171320751|ref|ZP_02909762.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MEX-5] gi|171094016|gb|EDT39118.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MEX-5] Length = 465 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 175/484 (36%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------LENGETIKSLTDRFIGAMHEDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIETLETNGYAYQAGDGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D+NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQG 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 TGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|21243088|ref|NP_642670.1| cysteinyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] gi|24418693|sp|Q8PK23|SYC_XANAC RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|21108603|gb|AAM37206.1| cysteinyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] Length = 476 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 193/496 (38%), Positives = 262/496 (52%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS+ +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSSPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITDRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F SS YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFSVSSFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK S+ PGWESPWGRGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSSADLPGWESPWGRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T++EL+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHELIARH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP----------- 349 P +R A+L HYR+P+D++ + +A+ L + T + Sbjct: 288 --PPEALRYALLSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDLAALQADSGNDVAPSRT 345 Query: 350 ---AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA----SAHILGI-------- 394 V SAL +DLNT A+ + +A E+ + L + + + Sbjct: 346 IPVEVESALEDDLNTPLALSVIASIASEARALRNELVHGGEPSTRMSDLHAVHAKLLGAG 405 Query: 395 -----------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 + I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFSRGTDAGDDARITALVEERSTAKKAKDFARADAIRKQLAEEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|323465875|gb|ADX69562.1| Cysteinyl-tRNA synthetase [Lactobacillus helveticus H10] Length = 474 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 174/495 (35%), Positives = 257/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 1 MKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 113 ATHEIKEIIAFVQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 344 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + A+ +D N +A+ A++ L A + L +F Sbjct: 345 DELAKAIAKTNEKFEVAMDDDFNVQNAVTAIYDLLPIVNANANAEKADKKSLKLFKDKLS 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + GI+ K + I++LV++R K K ++++D IR QL+ G ++D Sbjct: 405 AWLLVFGIDTEKLCSQSAGSNDDEIDQLVKKRDEARKKKDWATSDQIRDQLKEMGITIQD 464 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 465 T------PQGTRWTR 473 >gi|264677338|ref|YP_003277244.1| cysteinyl-tRNA synthetase [Comamonas testosteroni CNB-2] gi|262207850|gb|ACY31948.1| cysteinyl-tRNA synthetase [Comamonas testosteroni CNB-2] Length = 461 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 253/478 (52%), Gaps = 44/478 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R + F ++P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR Sbjct: 1 MSLRIYNTLSRALESFSPLEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRASGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T + +D L PT + Sbjct: 61 K--VTYVRNITDIDDKIIKRA------VENGETIRSLTDRMIDALHQDADALGIERPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + G AY+A N ++ + P YG S + +DE G RV Sbjct: 113 PRATEYVPQMLGMIARLQDKGLAYQAGNGDVNYAVRKFPGYGKLSGKSLDELNAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K +P DF+LWK + EP W+SP+G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 173 ADGKHDPLDFVLWKSAKADEPADVRWQSPFGEGRPGWHIECSAMGCELLGESFDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A W+HNGF+N++ KMSKS GNF TI ++L Sbjct: 233 DLQFPHHENEIAQSEGATG-KPFARTWMHNGFINVDNEKMSKSLGNFFTIRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + + A IR ++ +HYR P++++ L +A L + + Sbjct: 286 -KEYDAETIRFFVVRSHYRSPLNYSNVHLDDARGALKRLYTALDLVTPAEVQIDWSNPYA 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGI------EVCKEH 400 +A+ D T A+ L +LA E K+ ++ + A LG+ + + Sbjct: 345 ARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSPEVAGLLKALGACLGLLQAEPQKFLQAG 404 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + AIE + R K ++ AD IRK+L +G +L+D T W+ Sbjct: 405 AEGVDAAAIEAQIAARAEAKAAKNWAEADRIRKELLDQGIVLKDSAA------GTTWE 456 >gi|255994717|ref|ZP_05427852.1| cysteine--tRNA ligase [Eubacterium saphenum ATCC 49989] gi|255993430|gb|EEU03519.1| cysteine--tRNA ligase [Eubacterium saphenum ATCC 49989] Length = 462 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 160/474 (33%), Positives = 241/474 (50%), Gaps = 48/474 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIYNT+ + EF I+ +YVCGPTVY+F H+GNARP++VFD L R L Y Sbjct: 1 MKIYNTMTGEKEEFVPINEGEANIYVCGPTVYNFFHLGNARPLVVFDCLRRYLEYIGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII +AR+E + ++ +++ +D L + P+ Sbjct: 59 RVNFVQNFTDVDDKIINKAREE------GITANEVSINYIKEYFQDAKALNVREASLHPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T ++ +I I+ +I G AYE + ++ + T + YG S + IDE + G R+ + Sbjct: 113 VTENMSDIIAFIEKLITKGFAYEVDGDVYYKTRAFSEYGKLSHQNIDELEAGARINIEEK 172 Query: 185 KKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF LWK P E WESPWG GRPGWHIECSAM+ +LG DIH GG DL FP Sbjct: 173 KHDPLDFALWKARKEPDEIAWESPWGLGRPGWHIECSAMAQKFLGDTIDIHAGGRDLCFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS A W+HNG++ + K+SKS GNF T+ ELLE + Sbjct: 233 HHENEIAQSEACTG-RPFARYWMHNGYITMNKEKVSKSKGNFFTVRELLE-------EFD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS---------KGIIDPAVLS- 353 +R +L HYR PI+F+ + + +A+ L + + + +G + ++ Sbjct: 285 GETLRFFLLQGHYRNPIEFSKELIYQAKAGLDRIRRAKENLQYIIENGHEGEVSEDCINQ 344 Query: 354 ----------ALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI 394 + +DLNT AI + ++ + + L ++ILG Sbjct: 345 LNKRIDSFKMHMEDDLNTADAITDIFEMVTDINSQLEKNGKEYARLALSKLQEVSNILG- 403 Query: 395 EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + + I ++ L ER K K F AD +R ++ G+ ++D Sbjct: 404 -FLQGEGTEEIPENVKILADERQEARKNKDFKRADELRDEVLKLGYEIKDMPEG 456 >gi|218885586|ref|YP_002434907.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735052|sp|B8DKL0|SYC_DESVM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|218756540|gb|ACL07439.1| cysteinyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 485 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 177/499 (35%), Positives = 244/499 (48%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK F+ P + MYVCG T YD HIG+AR +VFDVL R LR+ + Sbjct: 1 MQLYNTLTRKKEHFEPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+ RN TD+DDKII RA QE + K F +D RL L +PR Sbjct: 60 -VTFARNFTDVDDKIITRANQEGL------TSQEVAEKYIATFYEDMDRLNVLRADLEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI L +I AY + ++ F + P YG S R +D+ + G RV Sbjct: 113 ATTHIEEMISLCVRLIEQDKAYATPSGDVYFRVRAFPGYGKLSGRDVDDLRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG GRPGWHIECSAMS +L DIHGGG DL+FP Sbjct: 173 EKEDPLDFALWKAAKPGEPFWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A + W+HNGF+ + KMSKS GNF TI ++LE ++ Sbjct: 233 HHENEIAQTEAALG-KDFVRYWVHNGFVQVNAEKMSKSLGNFRTIRDILE-------NYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------------S 341 +R +L HYR PIDFT + + EAE L + + + Sbjct: 285 PETLRYFLLTKHYRSPIDFTFESMDEAEKNLKRIYEALGLLHAELEREKWTSGPLPKDVT 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAH-- 390 + A A+ +D+NT +A+ + + R + + D F A Sbjct: 345 EEFEGLRQAFADAMEDDMNTAAALGHVFTMVRLANRILDNKGQRKTEGARAFFRAVLDEA 404 Query: 391 -----ILG------------IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG + C+ +E+L+Q R+ K F+ AD IR Sbjct: 405 ATWFAVLGVFGREPAGFLAELRACRVARKGIDPAKVEELLQARINARADKDFARADAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 ++ + G + D + Sbjct: 465 EIAALGIEVRDTPSGAVWD 483 >gi|260424802|ref|ZP_05733345.2| cysteine--tRNA ligase [Dialister invisus DSM 15470] gi|260403249|gb|EEW96796.1| cysteine--tRNA ligase [Dialister invisus DSM 15470] Length = 488 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 172/503 (34%), Positives = 251/503 (49%), Gaps = 65/503 (12%) Query: 1 MK-KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY 59 MK ++IK+YNTL + T F+ + P +++YVCG T Y+ HIGNARP + +DV+ R L++ Sbjct: 6 MKMEEIKVYNTLTGEKTVFRPLVPGEVKIYVCGVTPYNHPHIGNARPAVTWDVICRYLKH 65 Query: 60 YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP 119 + V +V+N TD+DDKII +A E I+ + + + + Sbjct: 66 IGYK--VEFVQNFTDVDDKIINKANAE------GSDWKTISDRYIDAYFQVMDAMHVRRA 117 Query: 120 THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV 179 PR ++H+ +I ++Q +I GHAY N++ +D S+ +YG+ S RKID+ G R+ Sbjct: 118 DVYPRVSDHMQDIIDMVQGLIDKGHAYVLGNDVYYDISTFEHYGALSGRKIDDMLAGARI 177 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 K+NP DF LWK + P EP WESPWG+GRPGWHIECSAMS HYLGK FD HGGG D Sbjct: 178 EVNEGKRNPGDFALWKGAKPGEPFWESPWGKGRPGWHIECSAMSVHYLGKTFDFHGGGSD 237 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299 LIFPHHENEIAQS + N W+HNGF+ + KMSKS NF ++L Sbjct: 238 LIFPHHENEIAQSEGCTGCK-FVNYWLHNGFITINSEKMSKSLNNFFLAKDVL------- 289 Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------------------- 337 + + +R +L YR P+D++ RL EAE + + Sbjct: 290 KEYSGDALRYFLLSVQYRNPLDYSRDRLDEAEKNMERLSGVIRRLKELAAKEGAEKTDAS 349 Query: 338 PQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP-------------- 383 + A A+ +D NT A A+ LA+ + Sbjct: 350 RSLEKAAEESLKAFHEAMDDDFNTGLATGAMFDLAKAINIYGTAVDGGLSVDHEAVEKAY 409 Query: 384 -IFNASAHILGI-----EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLES 437 ILGI E +K+ + ++ ++ R K K + AD IR +L++ Sbjct: 410 TALKTIMDILGILEEVWEKTDSPDDKSYNDLMDIILAVRQTARKEKMYKIADEIRDRLDA 469 Query: 438 KGFILEDYKNPDNGQRMTRWKQK 460 G ++ED RWK++ Sbjct: 470 AGIVIEDTPT------GARWKRR 486 >gi|290579657|ref|YP_003484049.1| putative cysteinyl-tRNA synthetase [Streptococcus mutans NN2025] gi|254996556|dbj|BAH87157.1| putative cysteinyl-tRNA synthetase [Streptococcus mutans NN2025] Length = 447 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 168/465 (36%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+TL R + EF I + + MYVCGPTVY++ H+GN R I FD + R Y Sbjct: 2 IKIYDTLTRSLREFVPIHENTVNMYVCGPTVYNYIHVGNGRSAIAFDTIRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ K F +D L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAAK------AGMTTKALSDKFIAAFKEDVAALGVKPATENPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ +I +Q ++ G AYE++ ++ F NY + + + ++E ++G E Sbjct: 114 VIDYMQDIIDFVQVLVDKGFAYESSGDVYFRVRKSDNYAALANKTLEELEIGASGRVDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 SDCKEDPLDFALWKAAKEGEIAWDSPWGAGRPGWHIECSVMATTILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS +K AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KKFANYWMHNGFVNIDNEKMSKSLGNFITVHDALKTM------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+P +FT + + +AEI L T +D A Sbjct: 287 -DGQVLRFFFATQHYRKPFNFTEKAIRDAEINLKYLKNTYEQPFTATVDEATFIRFLEKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D NT + I + +LA+ H + F I G+ +E L+ Sbjct: 346 QAAMDEDFNTANGITVVFELAKWINSGHYNQTVKDKFAEILQIFGVVFKEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IEKL++ER + F+ AD IR L ++G L D K+ R Sbjct: 402 IEKLIEERQKARAARDFTKADAIRDDLAAQGIKLLDTKDGVRWMR 446 >gi|309781263|ref|ZP_07676000.1| cysteine--tRNA ligase [Ralstonia sp. 5_7_47FAA] gi|308920084|gb|EFP65744.1| cysteine--tRNA ligase [Ralstonia sp. 5_7_47FAA] Length = 463 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 182/482 (37%), Positives = 262/482 (54%), Gaps = 46/482 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRAAGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + +S +T + +D L P H+ Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETMSALTGRFIAAMHEDADALGVQRPDHE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGRLQTNGLAYQATDGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG+ FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKAEEPAESRWASPWGEGRPGWHIECSAMSCELLGEHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ + KMSKS GNF TI ++L Sbjct: 234 DLQFPHHENEIAQSEGATG-KTFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT-----STSKGIID----- 348 + + A V+R +L +HYR ++++ L +A L++ + + D Sbjct: 287 -KLYDAEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAAAGAKPDWNESH 345 Query: 349 -PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL---- 401 L A+ +D NT A+ L +LA E K L A A +LG+ H Sbjct: 346 GKRFLEAMNDDFNTPVAVSVLFELASEVNKTRSPALASQLAALAGVLGLLGRDPHAFLQG 405 Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 + + +E ++ER + F+ AD IR L + G +LED +T W Sbjct: 406 GVSPDGLDAAEVEARIEERRAAKAARDFARADAIRADLLAAGIVLEDKPGG-----VTEW 460 Query: 458 KQ 459 ++ Sbjct: 461 RR 462 >gi|315037580|ref|YP_004031148.1| cysteinyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] gi|312275713|gb|ADQ58353.1| cysteinyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] Length = 477 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 169/495 (34%), Positives = 256/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 LKVYNTLTRKKEEFKPLVSGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYKGYK- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEIKDIINFVKTLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRLEDDTASEAV 347 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + ++A+ +D N +A+ A++ L A + + L +F Sbjct: 348 PDLAKAIEETEQKFVTAMDDDFNVQNALTAIYDLLPAVNANANSEKADKETLTLFEKKLA 407 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++ K + IE+LV++R K ++++D +R QL+ G ++D Sbjct: 408 AWLLVFGVDTEKLCAQNAGSNDDEIEELVKKRDEARANKDWATSDKLRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|6899996|emb|CAB71305.1| cysteinyl tRNA synthetase [Clostridium sticklandii] Length = 443 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 173/464 (37%), Positives = 252/464 (54%), Gaps = 55/464 (11%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY+F HIGNARP ++FD + Y E VTYV+N TD+DDKII+RA +E Sbjct: 1 MYVCGPTVYNFFHIGNARPFMIFDAFRNYMEYRGYE--VTYVQNFTDVDDKIIKRANEE- 57 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + K ++ KD L T PR T +I +I I+++I G AYE Sbjct: 58 -----GISPIEVAEKYIAEYFKDADALGIKRATVHPRVTENIENIITFIEDLISKGFAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 N ++ F++ + YG S++ ++E +G R+ KK+P DF LWK E GW+SP Sbjct: 113 LNGDVYFNSQAYKEYGKLSKQNLEELNLGARIDVNDEKKHPIDFALWKAKKEGEIGWQSP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG GRPGWHIECS MS+ YLG DIH GG DLIFPHHENEIAQS ++ A W+H Sbjct: 173 WGEGRPGWHIECSVMSARYLGDTIDIHAGGQDLIFPHHENEIAQSEARSG-KQFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N++ +KMSKS GNF T+ ++L + VIR +L HYR P++F+ + + Sbjct: 232 NGYINVDNQKMSKSLGNFFTVRDILS-------EFSGQVIRFFLLSAHYRNPVNFSKELI 284 Query: 328 TEAEILLSKWP----------------------QTSTSKGIIDPAVLSALYNDLNTVSAI 365 +A+ + + + ++ + A+ +D+NT AI Sbjct: 285 LQAKAGMERLANSKERLVFTISHAKGQMNESELELVSALENHRDRFIEAMDDDINTADAI 344 Query: 366 QALHKLARESTKN----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 + +LAR S N L +FN +L I + E + N + IEKL+++ Sbjct: 345 SIIFELARFSNTNVTENSSLEWAEKNLSLFNELTGVLNI-IKAEDTDSNDNEQIEKLIKD 403 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K K F+ AD IR +L+S G +ED + + T+WK+ Sbjct: 404 RVEAKKNKDFALADAIRDELKSMGIEIEDTR------QGTKWKK 441 >gi|257470811|ref|ZP_05634901.1| cysteinyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|317065015|ref|ZP_07929500.1| cysteinyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|313690691|gb|EFS27526.1| cysteinyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] Length = 473 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 186/493 (37%), Positives = 265/493 (53%), Gaps = 63/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIYNTL K+ EF+ + + MYVCGPTVY++ HIGNARP I FD + R Y + Sbjct: 2 IKIYNTLSGKVDEFKPVREGEVSMYVCGPTVYNYIHIGNARPAIFFDTVRRYFEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP-THQP 123 V YV+N TD+DDK+I RA +E ++ I K + + +DT+++ +P Sbjct: 61 -VKYVQNFTDVDDKMIRRANEE------GVSLKDIAEKYIKAYFEDTSKVNLKEAGMIRP 113 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEK 182 +AT HI MI +IQN+I G+AYEA ++ F+ + YG+ S++ +D+ K G R+ Sbjct: 114 KATEHIGDMIEIIQNLIEKGYAYEAEGDVYFNVEKYKDGYGALSKQNVDDLKSGARIEVA 173 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+P DF LWK + EP WESPWG+GRPGWHIECSAMS YLG FDIHGGG DLIF Sbjct: 174 DIKKSPVDFALWKAAKEGEPSWESPWGKGRPGWHIECSAMSHRYLGDTFDIHGGGQDLIF 233 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQS C+ E A W+HNG++N+ G KMSKS G F+ + ++L+ + Sbjct: 234 PHHENEIAQSKCSCGGE-FARYWMHNGYININGEKMSKS-GTFMLLRQVLD-------QF 284 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------TSTSKGIIDPA-- 350 VIRL +L HYR+P+DF+ L +A+ L + T + D A Sbjct: 285 EGRVIRLFILGAHYRKPMDFSNYELNQAKSSLERIENALLRAKDALAADTKEDGADCAEL 344 Query: 351 ----------VLSALYNDLNTVSAIQALHKLARESTKN--HDLLP-------------IF 385 ++A+ +D NT + A+ +L +E K D L + Sbjct: 345 AEVLKSSSEKFVTAMDDDFNTAQGLGAIFELIKELNKALEEDKLSAKGKETVKETVDYVV 404 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 N +LG I + S +E +++ R K ++ +D IR +L G ++D Sbjct: 405 NIMQEVLGVILKLDNEVGNLTSELVEFILELRREARADKNWAMSDKIRDRLAEIGIKIKD 464 Query: 445 YKNPDNGQRMTRW 457 K+ T W Sbjct: 465 GKD------TTTW 471 >gi|325956062|ref|YP_004286672.1| cysteinyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|325332627|gb|ADZ06535.1| cysteinyl-tRNA synthetase [Lactobacillus acidophilus 30SC] Length = 474 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 169/495 (34%), Positives = 256/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKVYNTLTRKKEEFKPLVSGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 113 ATHEIKDIINFVKTLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRLEDDTASEAV 344 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + ++A+ +D N +A+ A++ L A + + L +F Sbjct: 345 PDLAKAIEETEQKFVTAMDDDFNVQNALTAIYDLLPAVNANANSEKADKETLTLFEKNLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++ K + IE+LV++R K ++++D +R QL+ G ++D Sbjct: 405 AWLLVFGVDTEKLCAQNAGSNDDEIEELVKKRDEARANKDWATSDKLRDQLKEMGITIQD 464 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 465 T------PQGTRWTR 473 >gi|190570547|ref|YP_001974905.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|254781699|sp|B3CN54|SYC_WOLPP RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|190356819|emb|CAQ54186.1| cysteinyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 464 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 204/475 (42%), Positives = 279/475 (58%), Gaps = 38/475 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL +K F ID +I+MYVCGPTVYD AHIGNAR ++V+DVL+RLL++ YG+ Sbjct: 2 VKLYNTLTKKKEPFTPIDKDHIKMYVCGPTVYDTAHIGNARSIVVYDVLFRLLKFCYGK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII A ++ N I I+ T+ F +D + C PT++P+ Sbjct: 61 -VTYVRNITDIDDKIINAANEK------NSNIESISKYYTKTFHEDMESINCAEPTYEPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 AT +I +I LI++++ GHAYE+N + F S P YG S +KIDE G+RV + Sbjct: 114 ATENIDNIIKLIESLLQAGHAYESNKHVYFSVESYPEYGVLSGKKIDELNYGSRVEVGEN 173 Query: 185 KKNPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + + W SPWG GRPGWHIECSAMS YLGK FDIHGGG+DL Sbjct: 174 KKHPGDFVLWKPANETDYKLSSHWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A A W+HNGFL + KMSKS N + + +LL++ G Sbjct: 234 QFPHHENEIAQSKSAFAESTFAKYWVHNGFLTVNEEKMSKSLFNIVKVRDLLDSGIKG-- 291 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------STSKGIIDPAVLSA 354 VIR A+L THYR+P+D+T ++E++ L+K+ + S + + A Sbjct: 292 ----EVIRYALLKTHYRKPLDWTENVISESQETLNKFYRLLRSTCIEESDTEVSKDFIEA 347 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIE---VCKEHLNKNI 405 L NDLN A+ LH++A E K + L F SA +GI + + Sbjct: 348 LKNDLNIPEAVAILHEMATEINKTSNEYEKLKLTKKFVKSARFIGILESSYQEWFASGVS 407 Query: 406 SIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IE+L+ R + + K + +AD IR+QL+ G + D ++ T W K Sbjct: 408 HQEIERLIDLRKVAKQNKDYDTADKIREQLKQMGVTISDNEDGT-----TTWYGK 457 >gi|119897351|ref|YP_932564.1| cysteinyl-tRNA synthetase [Azoarcus sp. BH72] gi|119669764|emb|CAL93677.1| CysS protein [Azoarcus sp. BH72] Length = 460 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 189/480 (39%), Positives = 257/480 (53%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL R F+ I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR + Sbjct: 2 LSIHNTLSRSKEVFRPIEPGKVRMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGFD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRNITDIDDKII RA++ ++I +T + +D L L P H+PR Sbjct: 61 -VTYVRNITDIDDKIIRRAQEN------GESIRALTDRFIAAMHEDADALGVLRPDHEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+++ M LI+ + G AY A N+++ + YG S + +DE + G RV Sbjct: 114 ATDYVASMQSLIERLHAKGLAYVAANHDVCYAVRKFEGYGKLSGKSLDELRAGERVEVAG 173 Query: 184 HKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 KK+P DF+LWK + EP W SPWG GRPGWHIECSAMSS LG+ FDIHGGG DL Sbjct: 174 EKKDPLDFVLWKHAKAEEPDEAKWASPWGSGRPGWHIECSAMSSDLLGEHFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS A N W+HNGF+ ++ KMSKS GNF TI ++LET Sbjct: 234 QFPHHENEIAQSEGAHG-HAFVNYWMHNGFVRVDDEKMSKSLGNFFTIRDVLET------ 286 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA---------- 350 + A V+R +L HYR P++++ L +A L++ S A Sbjct: 287 -YDAEVVRFFILRAHYRSPLNYSDAHLDDARQALTRLYTALRSVEAAPAAVDWTESHALR 345 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCK---------E 399 +A+ +D NT A+ L +LA E + D L A +LG+ Sbjct: 346 FRAAMDDDFNTAEALAVLFELANEVNRGRDPLLAAQLKALGAVLGLLERDPVAFLQGSTP 405 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + IE + R K K F+ AD IR +L + G +LED G T W++ Sbjct: 406 AASGLGPEDIEARIAARAAAKKAKDFAEADRIRAELLAAGIVLED------GAGGTTWRR 459 >gi|239618081|ref|YP_002941403.1| cysteinyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506912|gb|ACR80399.1| cysteinyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] Length = 458 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 172/469 (36%), Positives = 235/469 (50%), Gaps = 40/469 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I NTL K EF I P +R+YVCGPTVY+F H+GN+RP I FD R L Y Sbjct: 2 LRITNTLTGKKEEFIPITPGEVRIYVCGPTVYNFVHLGNSRPAITFDAFRRYLEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +N TDIDDKII +A +E I + Q+ KD+ L PR Sbjct: 60 RVILAQNFTDIDDKIIIKANEEGVDAL------EIAERYIVQYWKDSLALGIRPANFHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T+ + ++I IQ++I G AY + ++ F+ S NYG S RK+++ G R+ Sbjct: 114 TTHFVDEIIEFIQDLIDKGFAYVVDGDVYFNVSEFKNYGELSHRKLEDMIAGARIEPGEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P DF LWK + EP W SPWG GRPGWHIECS MS+ LG+ FDIH GG DLIFPH Sbjct: 174 KKSPEDFALWKAAKEGEPFWNSPWGPGRPGWHIECSVMSTCILGETFDIHAGGADLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENE AQS + A W+HNG + L G KMSKS GNFITI + + + + Sbjct: 234 HENEKAQSEARHG-KTFARYWMHNGMMRLAGSKMSKSLGNFITIKDAV-------KKYGK 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----WPQTSTSKGIID------------ 348 IRL + HYR PID++ + L E + + S+G Sbjct: 286 DAIRLFIFSKHYRSPIDYSEEMLAENLRAVKRVNAILRDFEKSEGDKPLFSKKTPFVKEQ 345 Query: 349 -PAVLSALYNDLNTVSAIQALHKLA------RESTKNHDLLPIF-NASAHILGIEVCKEH 400 + AL +D NT A+ + L + + ++ + N +LGI E Sbjct: 346 IERFIEALDDDFNTPKAVALMFDLINKMGETKNRNRKLEIYHLIRNEFGPVLGILEKDEE 405 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 ++ NI ++ L++ R K K + AD IR +L G L D Sbjct: 406 VSANIDGLVKLLIEIRAEFKKDKNYEKADQIRDRLNELGIKLMDTPEGT 454 >gi|327182876|gb|AEA31323.1| cysteinyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118] Length = 474 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 169/495 (34%), Positives = 256/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 1 MKVYNTLTRKKEEFKPLVSGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYFEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEARAEGTTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++ +I G+AYE + ++ + +YG S + I++ + G Sbjct: 113 ATHEIKDIINFVKTLIDKGYAYEVDGDVYYRARKFKHYGELSDQNIEQLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSEENLKQAATILDRFKNTLTNINYRLEDDTASEAV 344 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + ++A+ +D N +A+ A++ L A + + L +F Sbjct: 345 PDLAKAIEETEQKFVTAMDDDFNVQNALTAIYDLLPAVNANANSEKADKETLTLFEKKLA 404 Query: 387 ASAHILGIEVCK--EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 A + G++ K + IE+LV++R K ++++D +R QL+ G ++D Sbjct: 405 AWLLVFGVDTEKLCAQNAGSNDDEIEELVKKRDEARANKDWATSDKLRDQLKEMGITIQD 464 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 465 T------PQGTRWTR 473 >gi|145629045|ref|ZP_01784844.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 22.1-21] gi|144978548|gb|EDJ88271.1| cysteinyl-tRNA synthetase [Haemophilus influenzae 22.1-21] Length = 414 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 164/414 (39%), Positives = 229/414 (55%), Gaps = 34/414 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ F+ I + + MYVCG TVYD HIG+ R + FDV+ R LR + Sbjct: 2 LKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 +TYVRNITD+DDKII+RA + + + + Q+ KD L L P +PR Sbjct: 61 -LTYVRNITDVDDKIIKRALENK------ETCDQLVDRMVQEMYKDFDALNVLRPDFEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HIP++I +++ +I GHAY A+ +++FD S YG SR+ +++ + G R+ Sbjct: 114 ATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FP Sbjct: 174 IKKNPMDFVLWKMSKENEPSWASPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA + N WIH+G + ++ KMSKS GNF TI ++L + Sbjct: 234 HHENEIAQSCCAHGG-QYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLN-------HYN 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI---------IDPAVLSA 354 A +R +L HYR ++++ + L A+ L + A Sbjct: 286 AEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVVFGGENFVETFREA 345 Query: 355 LYNDLNTVSAIQALHKLAREST--------KNHDLLPIFNASAHILGIEVCKEH 400 + +D NT +A+ L ++ARE K + L ILG+ Sbjct: 346 MDDDFNTPNALSVLFEMAREINKLKTEDAEKANGLAARLRELGAILGLLQQDPE 399 >gi|296877283|ref|ZP_06901323.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] gi|296431803|gb|EFH17610.1| cysteine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] Length = 447 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 171/465 (36%), Positives = 244/465 (52%), Gaps = 33/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KIY+T+ R + EF I+ +RMYVCGPTVY++ H+GNAR + FD + R Y E Sbjct: 2 LKIYDTMSRDLREFIPIEEGKVRMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII RA++E + K F +D T L T PR Sbjct: 61 -VAYISNFTDVDDKIINRAKEE------GITPQEVADKYIAAFREDVTALGVKPATRHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 + +I + ++I +AYE+ ++ F NY + + +++ ++G E Sbjct: 114 VVEFMDDIIRFVADLIEKDYAYESQGDVYFRVEKSHNYAKLANKTLEDLELGASGRTDEE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K+NP DF LWK + P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL Sbjct: 174 TARKENPVDFALWKAAKPGEISWDSPWGPGRPGWHIECSVMSTGILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L ++ Sbjct: 234 FPHHTNEIAQSEAKTG-KTFANYWMHNGFVNIDNVKMSKSLGNFITVHDAL-------KT 285 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+PI+FT + + +AE L T G +DPA Sbjct: 286 IDGQVLRFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGEVDPADLEGFVDKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEK 411 ++A+ D+N + I + +LA+ H + +A +L + + + IE Sbjct: 346 IAAMDEDINAANGITVVFELAKWINSGHYNQDVKDALTKML-EVFGVVFVEEVLDADIEA 404 Query: 412 LVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 L+ ER K F+ AD IR +L ++G L D K G R TR Sbjct: 405 LIAERQEARAKKDFARADAIRDELAAQGIKLLDTK---EGVRWTR 446 >gi|121602424|ref|YP_988796.1| cysteinyl-tRNA synthetase [Bartonella bacilliformis KC583] gi|187629794|sp|A1US43|SYC_BARBK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|120614601|gb|ABM45202.1| cysteinyl-tRNA synthetase [Bartonella bacilliformis KC583] Length = 500 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 224/502 (44%), Positives = 306/502 (60%), Gaps = 51/502 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL RK +F ID S +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ YG+ Sbjct: 4 LRFYNTLTRKKEDFIPIDSSKVRLYVCGPTVYDYAHIGNARPVIVFDILFRLLRHVYGKD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI RA +E+P + +NDAI +T + QF +DT L CL PT+QPR Sbjct: 64 HVIYARNVTDVDDKINARAIREYPKLTLNDAIHQLTERTYDQFQQDTEALGCLLPTYQPR 123 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKIDEQKMGTRVPE 181 AT+H+ +M LI+ ++ GHAY A N ++F +SI N YG F++R ++E K G RV Sbjct: 124 ATDHLEEMRSLIERLLEKGHAYIAENHVLFSVNSIKNNPLYGVFAKRSLNEMKAGARVDV 183 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSH-----YLG----- 228 +K++ DF+LWK ST EPGW+SP G GRPGWHIECSAMS Y G Sbjct: 184 APYKRDDMDFVLWKPSTQQEPGWKSPAGISVLGRPGWHIECSAMSMAKLLTPYGGGLACD 243 Query: 229 ----KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGN 284 VFDIHGGG+DLIFPHHENEIAQSC E+ AN W+HNGFL +EGRKMSKS GN Sbjct: 244 DLSVNVFDIHGGGIDLIFPHHENEIAQSCSVFGTERMANFWMHNGFLQVEGRKMSKSFGN 303 Query: 285 FITINELLETK---------KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS 335 FITI +LE+ +SW R +ML THYREP+++T QRL ++ L Sbjct: 304 FITIRSILESNFVEFSNAMTDDLKQSWAGLSARFSMLQTHYREPLNWTAQRLAQSSSELY 363 Query: 336 KWPQT-------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS 388 +W + + G+ID +++S L +DLNT ++ L K +E Sbjct: 364 RWYELLRCERSCLDNGGVIDASLISTLSDDLNTPNSFTLLRKFYKEEN-----AVALVQG 418 Query: 389 AHILGIEVCKEHLN----------KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + G+ + S I++ + ERL+ ++ K++++AD IR +L K Sbjct: 419 MDLFGLLRQEWVREIECPLFVKGIDLDSKFIDQRIAERLLFIQNKEWAAADEIRNELAKK 478 Query: 439 GFILEDYKNPDNGQRMTRWKQK 460 G L+D K+ G+R+T W+ K Sbjct: 479 GIALKDEKDSQTGERITTWEVK 500 >gi|313896271|ref|ZP_07829824.1| cysteine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975070|gb|EFR40532.1| cysteine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 475 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 163/494 (32%), Positives = 236/494 (47%), Gaps = 60/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ RK EF + + +Y CG T Y+ HIGNARP + +DV+ R L Sbjct: 2 LTVYNTMTRKKEEFHPLKEGEVSIYCCGVTPYNDPHIGNARPFVTWDVIRRYLARKGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y++N TD+DDKII A + I+ + + L PR Sbjct: 60 RVRYIQNFTDVDDKIINAANR------AGVTWKEISDRYIAAYFTAMDALNVHRADVFPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + + +I ++ +I G+AY + ++ + +YG S R +D+ + G RV Sbjct: 114 VSETMEDIIRMVGTLIARGYAYATSEGDVYYSVEKFAHYGRLSGRSLDDMEAGARVEINE 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS YLG+ FD HGGG DLIFP Sbjct: 174 TKRHPMDFALWKAAKPGEPAWESPWGKGRPGWHIECSAMSVKYLGEAFDFHGGGSDLIFP 233 Query: 244 HHENEIAQSC-CADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 HHENEIAQ+ C D EK A W+HNGF+ ++ KMSKS NF T+ ++L + + Sbjct: 234 HHENEIAQAEPCIDGHEKFARYWLHNGFITIDNEKMSKSKNNFFTVKDIL-------KEF 286 Query: 303 PAPVIRLAMLMTHYREPIDFTV--------------------QRLTEAEILLSKWPQTST 342 P VIR +L THYR P+DF+ L+ E Sbjct: 287 PGEVIRFFILQTHYRSPLDFSDERLREAEAALARLAHTKEVVDELSGREGTADTAAALVA 346 Query: 343 SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLP---------------IFNA 387 A +A+ +D NT A+ + L++E + L + Sbjct: 347 QAKDFLTAFDAAMDDDFNTALALSQMFGLSKEINRYRQELEHGTAFDAAHFAEAADAYRT 406 Query: 388 SAHILGIEVCKEHLNKN--ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A I+GI + + +E ++ R K ++ AD IR +L+ +G +LED Sbjct: 407 MAEIIGIFEQEPAAVEGGLADGLMEIIIALRQDARVQKNWALADRIRDELKERGVVLEDT 466 Query: 446 KNPDNGQRMTRWKQ 459 RWK+ Sbjct: 467 PT------GVRWKR 474 >gi|282882291|ref|ZP_06290922.1| cysteine--tRNA ligase [Peptoniphilus lacrimalis 315-B] gi|281297841|gb|EFA90306.1| cysteine--tRNA ligase [Peptoniphilus lacrimalis 315-B] Length = 467 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 174/483 (36%), Positives = 248/483 (51%), Gaps = 51/483 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K++N+L K EF I+ + MY CGPTVY++ H+GNARP++VFD L R + Y Sbjct: 1 MKLFNSLTGKKEEFYPINSGKVTMYNCGPTVYNYIHVGNARPIVVFDTLRRY--FLYKGL 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLA-PTHQP 123 V +V N TDIDDKII RA +E N I K ++F KD + L T P Sbjct: 59 DVKFVLNFTDIDDKIINRANEE------NKTTEQIAEKYIEEFKKDASALGLYDYQTINP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT+ + QMI IQ +I G AY ++ ++ FD + YG S +KI++ + G+RV Sbjct: 113 RATHVVDQMISFIQTLIDKGAAYVSSGDVYFDVNYDKEYGKLSGKKIEDLRAGSRVDVSD 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF LWK EP W++PWG GRPGWHIECS M+ LG DIH GG DL FP Sbjct: 173 LKRNPYDFALWKNKKENEPYWKAPWGEGRPGWHIECSVMAKTLLGDTIDIHTGGEDLKFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS + A W+HNG + + KMSKS GNF T+ E+ + + Sbjct: 233 HHENEIAQSETCNDA-PFARFWLHNGMITVNNEKMSKSKGNFFTVREV-------SKEYD 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------STSKGII 347 ++R +L T YR PI+F+ + + + + L + + + I Sbjct: 285 LEILRFFLLTTSYRAPINFSREVMNQTKNALERLYNAKYKLEKDIELSKERDLTEDEKKI 344 Query: 348 DPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHDL----------LPIFNASAH 390 + + A+ +DLNT AI A+ L ++ N D + + Sbjct: 345 EEKFQAHRQSFEKAMEDDLNTADAITAIFDLVKDINVNLDENSAKKLLEEGMSLLKTLTK 404 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 ILGI + +E ++ I L++ER K K F AD IR +L KG ++D + Sbjct: 405 ILGI-MEREKNCDDLDEEILNLIKEREDARKNKDFKRADEIRDELLEKGIEIKDTRKGIE 463 Query: 451 GQR 453 +R Sbjct: 464 WKR 466 >gi|296158961|ref|ZP_06841789.1| cysteinyl-tRNA synthetase [Burkholderia sp. Ch1-1] gi|295890836|gb|EFG70626.1| cysteinyl-tRNA synthetase [Burkholderia sp. Ch1-1] Length = 465 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 256/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F + +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQTFVPLQDGVVRMYVCGMTVYDYCHVGHARVMVVFDIVQRWLRTLGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + + +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIRRA------VENGETIKSLTDRFIKALHEDADALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT+ IPQM+ +I+ + +G+AY+A + ++ + NYG S + +++ + G RV Sbjct: 114 PRATDFIPQMLGMIERLEANGYAYQASDGDVNYAVRKFANYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK++ P EP GW+S +GRGRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKQDPLDFVLWKQAKPDEPADTGWDSKYGRGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNG++ ++ KMSKS NF TI E+L Sbjct: 234 DLQFPHHENEIAQSEAATG-QTFVNFWMHNGYVQIDNEKMSKSLNNFFTIREVLA----- 287 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R + HYR P++++ + +A L++ Sbjct: 288 --QYDAEVVRFFIARAHYRSPLNYSDVHIDDARNALTRLYTALKDVTPDGAELDWNEAYA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHL----- 401 +A+ +D NT A+ L +LA E + D L + ++G+ + Sbjct: 346 QRFQAAMNDDFNTPVAVSVLFELASEVNRTRDSALARQLRSLGAVIGLLGREPRAYLQQA 405 Query: 402 ------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + AIE + R + K F++AD IR +L G LED +T Sbjct: 406 AGTAAVGALEAAAIEAKIAARAAAKQSKDFAAADRIRSELLEAGVALEDKPGG-----LT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|269926934|ref|YP_003323557.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269790594|gb|ACZ42735.1| cysteinyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 453 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 163/464 (35%), Positives = 237/464 (51%), Gaps = 31/464 (6%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I+NTL + EF ++P N+ MYVCGPTVY AHIG+A VFD++ R L Y + Sbjct: 2 LYIHNTLTDRKEEFIPLNPPNVLMYVCGPTVYGPAHIGHAMSYTVFDIVRRYLEYKGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V+N TD+DDKII R+ +E + + ++ ++F++ L L + PR Sbjct: 61 -VKHVQNFTDVDDKIIARSNEE------GISWKDLATRYEREFLRQMDSLNILRAHYYPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 A+ IP++I IQ +I G+AY + ++ F YG S R++DE + G R+ Sbjct: 114 ASEVIPEIIEDIQRLIARGYAYVVDGDVYFRVLKDEEYGELSHRRLDEMRAGARIEADPR 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF LWK + EP WESPWG GRPGWHIEC+ M+ LG+ DIHGGG DLIFPH Sbjct: 174 KEHPMDFALWKSAKLGEPYWESPWGPGRPGWHIECTTMNLRMLGEQIDIHGGGADLIFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS WIHNG L LE KM++S GN ++I F R + A Sbjct: 234 HENEIAQSEAITGKHPFVRYWIHNGLLQLEEEKMARSVGNVLSI-------DFIVRQYGA 286 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG--------IIDPAVLSALY 356 RL +L +HYR+P++F+ + L A+ + + Q SA+ Sbjct: 287 DAFRLFVLSSHYRKPLNFSFEALESAKRGVLRLYQAVGEDAGPAGSEFKDFRQRFESAMD 346 Query: 357 NDLNTVSAIQALHKLAREST-------KNHDLLPIFNASAHILGIEVCK-EHLNKNISIA 408 +D NT AI L +LAR+ + + +LG+ + Sbjct: 347 DDFNTPQAIAVLFELARDVNALRSEGKDASTAAGLLRELSALLGLRLDSVGGEATEAEPF 406 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 I+ +V R L + + +DYIR +L G + D + Sbjct: 407 IDLIVGVRDKLRASRIYELSDYIRDKLGELGVSVMDTPEGSKWR 450 >gi|328462973|gb|EGF34781.1| cysteinyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463] Length = 473 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 258/494 (52%), Gaps = 61/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 1 MKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGYK- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + K F++DTT L T PR Sbjct: 60 -VKYVSNFTDVDDKMINEAHAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 113 ATHEIKEIIAFVQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 172 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 233 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 287 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 344 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + A+ +D N +A+ A++ L A + L +F Sbjct: 345 DELAKAIAKTNEKFEVAMDDDFNVQNALTAIYDLLPIVNANANAEKADKKSLKLFKDKLS 404 Query: 387 ASAHILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A + GI+ K + + + I++LV++R K K ++++D IR QL+ G ++D Sbjct: 405 AWLLVFGIDTEKLCSQSADSNDEIDQLVKKRDEARKKKDWATSDQIRDQLKEMGITIQDT 464 Query: 446 KNPDNGQRMTRWKQ 459 + TRW + Sbjct: 465 ------PQGTRWTR 472 >gi|24378673|ref|NP_720628.1| cysteinyl-tRNA synthetase [Streptococcus mutans UA159] gi|30316156|sp|Q8DWA9|SYC_STRMU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|24376535|gb|AAN57934.1|AE014867_6 putative cysteinyl-tRNA synthetase [Streptococcus mutans UA159] Length = 447 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 168/465 (36%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKIY+TL R + EF I + + MYVCGPTVY++ H+GN R I FD + R Y Sbjct: 2 IKIYDTLTRSLREFVPIHENTVNMYVCGPTVYNYIHVGNGRSAIAFDTIRRYFEYRGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDKII+ A + ++ K F +D L T PR Sbjct: 60 TVNYISNFTDVDDKIIKAAAK------AGMTTKALSDKFIAAFKEDVAALGVKPATENPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPE 181 +++ +I +Q ++ G AYE++ ++ F NY + + + ++E ++G E Sbjct: 114 VIDYMQDIIDFVQILVDKGFAYESSGDVYFRVRKSDNYAALANKTLEELEIGASGRVDAE 173 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + E W+SPWG GRPGWHIECS M++ LG DIHGGG DL Sbjct: 174 SDCKEDPLDFALWKAAKEGEIAWDSPWGAGRPGWHIECSVMATTILGDTIDIHGGGADLE 233 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHH NEIAQS +K AN W+HNGF+N++ KMSKS GNFIT+++ L+T Sbjct: 234 FPHHTNEIAQSEAKTG-KKFANYWMHNGFVNIDNEKMSKSLGNFITVHDALKTM------ 286 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------V 351 V+R HYR+P +FT + + +AEI L T +D A Sbjct: 287 -DGQVLRFFFATQHYRKPFNFTEKAIRDAEINLKYLKNTYEQPFTATVDEAVFARFLEKF 345 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNH---DLLPIFNASAHILGIEVCKEHLNKNISIA 408 +A+ D NT + I + +LA+ H + F I G+ +E L+ Sbjct: 346 QAAMDEDFNTANGITVVFELAKWINSGHYDQTVKDKFAEILQIFGVVFKEEVLD----AE 401 Query: 409 IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 IEKL++ER + F+ AD IR L ++G L D K+ R Sbjct: 402 IEKLIEERQKARAARDFTKADAIRDDLAAQGIKLLDTKDGVRWMR 446 >gi|254420661|ref|ZP_05034385.1| cysteinyl-tRNA synthetase [Brevundimonas sp. BAL3] gi|196186838|gb|EDX81814.1| cysteinyl-tRNA synthetase [Brevundimonas sp. BAL3] Length = 469 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 182/487 (37%), Positives = 262/487 (53%), Gaps = 48/487 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + I++TL R+ F+ DP+ + +YVCGPTVYD+AHIGNARP +VFDVL RLLR YG Sbjct: 1 MPLHIHDTLHREKRLFEPRDPNRVTLYVCGPTVYDYAHIGNARPPVVFDVLVRLLRRTYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 V Y RN+TD+DDKI ++A +E I +T++ ++ D L P Sbjct: 61 ADHVIYARNVTDVDDKINQKAAREGVPIG------EVTARYEAAYLADMGLLNVSPPDLA 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P T++IP ++ IQ I+ G AY A ++FD SS P+YG+ S R +D+ G RV Sbjct: 115 PHVTDYIPAIVAQIQAIVDAGCAYAAEGHVLFDVSSYPSYGALSGRNLDDMIAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM LG DIHGGG+DL+F Sbjct: 175 PYKKNPHDFVLWKPSKPDEPSWPSPWGEGRPGWHIECSAMIEQALGLPIDIHGGGIDLVF 234 Query: 243 PHHENEIAQSCCADRIEK-------TANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 PHHENEIAQ CA + A W+HNGFL ++ KMSKS GN + +++L+ Sbjct: 235 PHHENEIAQGVCAHGHAQGDKAHDEYARYWMHNGFLTVDAEKMSKSVGNVLLLHDLV--- 291 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------- 348 ++ P V+R A+L HYR+P+D+ L +++ L + ++ Sbjct: 292 ----QAMPGEVVRWALLSAHYRQPLDWNQGLLDQSKKSLDRLYGALHRSSGVEVLDLDPP 347 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHILGIEV--- 396 + ++ +DLNT A+ +L L+ E + A A ILG+ Sbjct: 348 ADFMKSIEDDLNTPGAMASLFALSSEIERGMTAGDLDAVAQARARLMACASILGVLQSDP 407 Query: 397 ---CKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + ++ + I +E L+++R K + AD IR +L + ++ D G Sbjct: 408 AAWLEGDVSDALRIEVEALLEQRAAARAAKDWPEADRIRDRLNALNVVVMD------GPD 461 Query: 454 MTRWKQK 460 W+ K Sbjct: 462 GATWRMK 468 >gi|254469086|ref|ZP_05082492.1| cysteinyl-tRNA synthetase [beta proteobacterium KB13] gi|207087896|gb|EDZ65179.1| cysteinyl-tRNA synthetase [beta proteobacterium KB13] Length = 453 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 183/474 (38%), Positives = 262/474 (55%), Gaps = 40/474 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IKI+NT K +F+ I ++++MYVCG TVYD H+G+AR +IVFD++YR + Sbjct: 2 IKIFNTFTSKKEKFKPITENHVKMYVCGMTVYDDCHVGHARVLIVFDLIYRW--FLNSGY 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII ++ + +T + +D+ L+ + PT QP+ Sbjct: 60 DVQYVRNITDIDDKIINKSNDQDCKFN------ELTDRYIDSMHEDSKALSVIPPTFQPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT IP MI +I ++ G AY N ++ F+ + +YG S++ +D+ G+RV Sbjct: 114 ATEAIPSMIKMISILVDKGFAYIGKNGDVFFEIAKFKDYGKLSKKNVDDLDAGSRVKIDD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KK+ DF+LWK S EP W+SPWG GRPGWHIECSAMSS LG+ FDIHGGG DLIFP Sbjct: 174 NKKSFGDFVLWKLSKENEPSWQSPWGNGRPGWHIECSAMSSDILGESFDIHGGGQDLIFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS K AN WIHNGF+N++ KMSKS GNF T+ +L + + Sbjct: 234 HHENEIAQSESCHG-HKMANYWIHNGFVNVDDEKMSKSLGNFFTLKNVL-------KKYS 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVLS 353 V+R + +HYR P++++ Q L +A++ + K I + Sbjct: 286 GEVVRFFVYKSHYRSPLNYSDQNLNDAKVAVEKIYIALRPYKCIQVDLDWSKASLSKIKD 345 Query: 354 ALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASAHILGIEVCKEHL-----NKNIS 406 AL +D N+ AI + KL + K N+DL + LG+ + +K Sbjct: 346 ALDDDFNSPKAISIIFKLINQLNKGSNNDLANEIYSVLKALGLMAIPQEEFFTKSSKIDH 405 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 IEKL+Q+R K + AD +R +++S G +LED + T W+ K Sbjct: 406 DHIEKLIQQRAQAKLQKDYQKADELRNEIDSLGVVLEDTAS------GTVWRIK 453 >gi|302382798|ref|YP_003818621.1| cysteinyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302193426|gb|ADL00998.1| cysteinyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 469 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 183/487 (37%), Positives = 258/487 (52%), Gaps = 48/487 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +++TL R+ F DP + +YVCGPTVYDFAHIGNARP +VFDVL RLLR YG Sbjct: 1 MTLFLHDTLHREKRAFVPRDPERVTLYVCGPTVYDFAHIGNARPPVVFDVLVRLLRREYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RN+TD+DDKI +A +E I +T++ ++ D + L P Sbjct: 61 AESVIYARNVTDVDDKINAKAHREGVPIG------DVTARYEAAYLADMSALNVTPPDIA 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 P T H+ ++ I I+ G AY A ++FD SS P+YG+ S R +D+ G RV Sbjct: 115 PHVTGHMDAIVRQIGEIMDQGCAYAAEGHVLFDVSSYPSYGALSGRNLDDMIAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM LG DIHGGG+DL+F Sbjct: 175 PYKKNPHDFVLWKPSKPDEPSWPSPWGDGRPGWHIECSAMIEQTLGLPIDIHGGGIDLVF 234 Query: 243 PHHENEIAQSCCADR-------IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETK 295 PHHENEIAQ CA + + W+HNGFL ++ KMSKS GN + +++L++T Sbjct: 235 PHHENEIAQGVCAHGHAHDADSHDAYSRYWMHNGFLTVDAEKMSKSVGNVLLLHDLVQT- 293 Query: 296 KFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII-------D 348 P V+R A+L HYR+P+D+ L ++ L + + Sbjct: 294 ------IPGEVVRWALLSAHYRQPLDWNQSLLDQSRKNLDRLYGALRRAEAVAPLGDMPS 347 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD---------LLPIFNASAHILGI----- 394 P L+A+ +DLNT A+ L L+ E + AS+ ILG+ Sbjct: 348 PEFLTAISDDLNTPGAMATLFALSSEIERAMTAGDHHAVGIAKAELLASSRILGVLLSTP 407 Query: 395 -EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQR 453 + + + + +E L+ ER+ K ++ AD IR +L + ++ D G Sbjct: 408 DQWFEGGADDALKAEVEGLLAERVTARAEKNWAEADRIRDRLTALNVVVMD------GPT 461 Query: 454 MTRWKQK 460 W+ K Sbjct: 462 GATWRLK 468 >gi|161506926|ref|YP_001576880.1| cysteinyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] gi|172048174|sp|A8YTD3|SYC_LACH4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|160347915|gb|ABX26589.1| Cysteinyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] Length = 476 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 174/494 (35%), Positives = 257/494 (52%), Gaps = 61/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 4 VKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGYK- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEAHAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I IQ +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 116 ATHEIKEIIAFIQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 347 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + A+ +D N +A+ A++ L A + L +F Sbjct: 348 DELAKAIAKTNEKFEVAMDDDFNVQNALTAIYDLLPIVNANANAEKADKKSLKLFKDKLS 407 Query: 387 ASAHILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A + GI+ K + + I++LV++R K K ++++D IR QL+ G ++D Sbjct: 408 AWLLVFGIDTEKLCSQSAGSNDEIDQLVKKRDEARKKKDWATSDQIRDQLKEMGITIQDT 467 Query: 446 KNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 ------PQGTRWTR 475 >gi|240850206|ref|YP_002971599.1| cysteinyl-tRNA synthetase [Bartonella grahamii as4aup] gi|240267329|gb|ACS50917.1| cysteinyl-tRNA synthetase [Bartonella grahamii as4aup] Length = 502 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 234/504 (46%), Positives = 312/504 (61%), Gaps = 51/504 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K+++ YNTL RK F IDP+ +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ YG Sbjct: 2 KELRFYNTLTRKKENFTPIDPTRVRLYVCGPTVYDYAHIGNARPVIVFDILFRLLRHVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI RA E+P++ +NDAI +T + QF +DT L CL PT Q Sbjct: 62 NEHVLYARNITDVDDKINARAVFEYPNLSLNDAIRQLTERTYCQFQQDTIALGCLLPTSQ 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRV 179 PRAT H+ +M LI+ ++ GHAY+A N I+F SSI P+YG+F+ R +DE + G R+ Sbjct: 122 PRATEHLEEMRSLIERLLEKGHAYKAENHILFSVSSIKNPPHYGAFANRSLDEMRAGARI 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL--------- 227 +K+ DF+LWK S EPGWESP G GRPGWHIECSAMS L Sbjct: 182 DVAAYKREEMDFVLWKPSVEGEPGWESPAGIPVLGRPGWHIECSAMSMAKLLAPYGGGLT 241 Query: 228 -----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 VFDIHGGGLDLIFPHHENEIAQSC A E+ AN W+HNGFL +EG+KMSKS Sbjct: 242 CDDPTANVFDIHGGGLDLIFPHHENEIAQSCSAFGTERMANFWMHNGFLQVEGKKMSKSF 301 Query: 283 GNFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 GNFITI +LE ++W R +ML THYREP+++T QRL ++ Sbjct: 302 GNFITIRSVLENNFLEFNGILIDEMKKNWAGLSARFSMLQTHYREPLNWTAQRLIQSSGE 361 Query: 334 LSKWPQTSTSK-------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN 386 L +W + SK I+ ++ AL +DLNT A+ L K +E L + N Sbjct: 362 LYRWYELLRSKKSEMENNEAINDTLIDALSDDLNTPKALTLLRKFYKEGN----ALALSN 417 Query: 387 ASAHILGI---EVCKE-------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLE 436 ++LG+ E KE S I++ + ERL L+ K++ +AD IR +L Sbjct: 418 GM-NLLGLLRQEWIKEIDCPLFIKKTFLDSKFIDQRIAERLRLIHNKEWEAADTIRDELA 476 Query: 437 SKGFILEDYKNPDNGQRMTRWKQK 460 ++G +L+D K+P +G+R+T W+ K Sbjct: 477 AEGVLLKDSKDPQSGERITVWEIK 500 >gi|319404030|emb|CBI77618.1| Cysteinyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498] Length = 502 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 225/503 (44%), Positives = 309/503 (61%), Gaps = 51/503 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ YNTL R+ +F ID + +R+YVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 ELRFYNTLTRRKEDFIPIDATKVRLYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHIYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +A ++P + +NDAI +T + QF +DT L CL PT QP Sbjct: 63 NHVIYVRNITDVDDKINAKAALQYPDLELNDAIHQLTEHTSYQFQQDTLALGCLPPTSQP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 RAT+H+ ++ +LI+ ++ GHAY A+N I+F SS+ P YG F++R +DE + G R+ Sbjct: 123 RATDHLEEIRFLIERLLEKGHAYIADNHILFSVSSMGDNPRYGMFAKRSLDEMRAGARID 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL---------- 227 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 183 VASYKKGEMDFVLWKPSAQGEPGWTSPAGISVLGRPGWHIECSAMSMAKLLSPYGGGFVC 242 Query: 228 ----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +FDIHGGG+DLIFPHHENEIAQSC E+ AN W+HNGFL +EG+KMSKS G Sbjct: 243 EDPTANIFDIHGGGIDLIFPHHENEIAQSCSVFGTERMANFWMHNGFLQVEGKKMSKSLG 302 Query: 284 NFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 NFITI LLE F + W IR +ML THYREP+++T+QRL ++ L Sbjct: 303 NFITIRSLLEDDFFEFADILSAEVKQIWAGLSIRFSMLQTHYREPLNWTMQRLIQSSSEL 362 Query: 335 SKWPQTSTSKG-------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA 387 +W + S+ +D +++ L NDLNT + I L K +E H+++ + + Sbjct: 363 YRWYELLRSEKYCLEDNQTVDSSLIKTLSNDLNTSNTITILRKFYKE----HNVIALTHG 418 Query: 388 SAHILGIEVCKEHLNKNIS----------IAIEKLVQERLILLKMKKFSSADYIRKQLES 437 LG+ + K I++ + ERL L+ K++++AD IR +L Sbjct: 419 M-DFLGLLRQELVKEKECPLFIGKTHLNLQFIDQRIAERLALIHNKEWAAADKIRDELAV 477 Query: 438 KGFILEDYKNPDNGQRMTRWKQK 460 +G L+D K+P G+R+T W+ K Sbjct: 478 EGIFLKDSKDPQTGERITTWEMK 500 >gi|84686990|ref|ZP_01014873.1| cysteinyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654] gi|84664964|gb|EAQ11445.1| cysteinyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654] Length = 457 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 212/450 (47%), Positives = 273/450 (60%), Gaps = 17/450 (3%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +IK +NT R F IDP N+RMYVCGPTVYD AH+GNARP++VFDVLYRLLR YG Sbjct: 3 EIKFHNTATRSKEVFTPIDPDNVRMYVCGPTVYDRAHLGNARPVVVFDVLYRLLREVYGP 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 VTYVRN TD+DDKIIERA ++ I ITS+ TQ ++ D L L PT P Sbjct: 63 NHVTYVRNFTDVDDKIIERANRDGKEI------DQITSETTQWYLDDMAALGALEPTAMP 116 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 RAT HI M+ +I+ +I GHAY A ++F S +YG S R +D+ G RV Sbjct: 117 RATQHIDDMVTMIEGLIDSGHAYAAEGHVLFAVDSYDDYGKLSGRSVDDMIAGARVEVAP 176 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +K+NP DF+LWK + EPGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 177 YKRNPMDFVLWKPARDGEPGWDSPWGRGRPGWHIECSAMSYGLLGESFDIHGGGNDLMFP 236 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA AN+W+HN L +EG+KMSKS GNF T+++LLE + P Sbjct: 237 HHENEIAQSKCAHAGAGFANVWLHNEMLQVEGKKMSKSLGNFFTVHDLLE------QGVP 290 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--PQTSTSKGIIDPAVLSALYNDLNT 361 VIR L THYR+P+D+T ++ EAE L KW + S G + A++ A+ NDLNT Sbjct: 291 GEVIRFVFLGTHYRKPMDWTEKKREEAEATLGKWHRMRGSNKPGAVPKAIVDAVANDLNT 350 Query: 362 VSAIQALHKLARESTKNHDLLPIFNASAHILG---IEVCKEHLNKNISIAIEKLVQERLI 418 AI LHKLA L + + +++ +E + +S KL Q R+ Sbjct: 351 PEAISVLHKLANIGDIEGLLGGLDFLGLKTIDTEMLDLIREGEQERLSELEAKLTQLRIG 410 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNP 448 + K +S D ++ L + G + K Sbjct: 411 AMNTKDYSQVDAMKSALIAAGVEVRMSKAG 440 >gi|260102407|ref|ZP_05752644.1| cysteine-tRNA ligase [Lactobacillus helveticus DSM 20075] gi|260083775|gb|EEW67895.1| cysteine-tRNA ligase [Lactobacillus helveticus DSM 20075] Length = 476 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 173/494 (35%), Positives = 258/494 (52%), Gaps = 61/494 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ + P I MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 4 VKVYNTLTRKKEEFKPLVPGQISMYVCGPTVYNYIHIGNARSSIAFDTIRRYLEYKGYK- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I A E ++P + K F++DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEAHAEETTVPK------LAEKFINAFLEDTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I ++I +Q +I G+AYE++ ++ + +YG S + I+ + G Sbjct: 116 ATHEIKEIIAFVQTLIDKGYAYESHGDVYYRAKKFKHYGELSDQNIERLEEGASEHINDE 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQNRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------- 340 + V+R M YR I+++ + L +A +L ++ T Sbjct: 290 --KEVDPQVLRFFMASVQYRRQINYSAENLQQAATILDRFKNTLVNINYRLEDDTPSKDS 347 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKL-------ARESTKNHDLLPIFN---- 386 + + + A+ +D N +A+ A++ L A + L +F Sbjct: 348 DELAKAIAKTNEKFEVAMDDDFNVQNALTAIYDLLPIVNANANAEKADKKSLKLFKDKLS 407 Query: 387 ASAHILGIEVCKE-HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDY 445 A + GI+ K + + + I++LV++R K K ++++D IR QL+ G ++D Sbjct: 408 AWLLVFGIDTEKLCSQSADSNDEIDQLVKKRDEARKKKDWATSDQIRDQLKEMGITIQDT 467 Query: 446 KNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 ------PQGTRWTR 475 >gi|298490116|ref|YP_003720293.1| cysteinyl-tRNA synthetase ['Nostoc azollae' 0708] gi|298232034|gb|ADI63170.1| cysteinyl-tRNA synthetase ['Nostoc azollae' 0708] Length = 486 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 172/506 (33%), Positives = 241/506 (47%), Gaps = 70/506 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + IYNTL R+ F ++P ++MY CG TVYD+ H+G+AR I++DV+ R L+ Sbjct: 1 MTLSIYNTLTRRQEPFTTVEPGKVKMYCCGVTVYDYCHLGHARACIIWDVVRRYLQLIGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y++N TDIDDKI+ RARQE + + + Q + +D +RL Sbjct: 61 D--VRYIQNFTDIDDKILNRARQEK------STMEAVAERYIQAYFEDMSRLGIKEANEY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--- 179 PRAT+ + + LI ++ G AY AN ++ + YG S RK+++ ++G Sbjct: 113 PRATHTMNGIQRLIHDLEHKGFAYPANGDVYYAVQKFDEYGKLSGRKLEDLQLGASERVN 172 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 E K+ P DF LWK EP WESPWG+GRPGWHIECSAM LG DIH G Sbjct: 173 IEDAEYQKKQYPFDFALWKAVKQGEPAWESPWGKGRPGWHIECSAMVRERLGDTIDIHTG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS + AN W+HNG + ++G KMSKS GNF TI LL+ Sbjct: 233 GADLIFPHHENEIAQSEAVTG-KPLANYWLHNGMVKVDGEKMSKSLGNFTTIRNLLD--- 288 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------- 340 R +RL +LM YR+PIDFT + + A Q Sbjct: 289 ---RGVDPMALRLFVLMAQYRKPIDFTDEAILAATNGWYTLRQGLLFGYQYGKKLGTGEW 345 Query: 341 ------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLL------------ 382 + + + +D N + + +LA+E + +++ Sbjct: 346 GLGIRNNLTSNTYIERFKEVVNDDFNFPGGLAVIFELAKELIREKNIIVHQGKTETPPDK 405 Query: 383 -----PIFNASAHILGIEVCKE----HLNKNISIAIEKLVQERLILLKMKKFSSADYIRK 433 A +LG+ E + IE L+Q+R K K F+ +D IR Sbjct: 406 LLQEWQTLVTLADVLGLTAQLEIETISEDALTDAEIEDLIQKRQEARKGKNFAESDCIRD 465 Query: 434 QLESKGFILEDYKNPDNGQRMTRWKQ 459 L SKG L D TRW + Sbjct: 466 DLLSKGITLIDNC------EGTRWHR 485 >gi|221068474|ref|ZP_03544579.1| cysteinyl-tRNA synthetase [Comamonas testosteroni KF-1] gi|220713497|gb|EED68865.1| cysteinyl-tRNA synthetase [Comamonas testosteroni KF-1] Length = 461 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 176/478 (36%), Positives = 250/478 (52%), Gaps = 44/478 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R + F ++P ++RMYVCG TVYD H+G+AR M+ FDV+ R LR Sbjct: 1 MSLRIYNTLSRALESFSPLEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRASGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII RA + + I +T + +D L PT + Sbjct: 61 K--VTYVRNITDIDDKIIRRA------VENGETIRSLTDRMIDALHQDADALGIERPTLE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + G AY+A N ++ + YG S + +DE G RV Sbjct: 113 PRATEYVPQMLGMIAKLQDKGLAYQAGNGDVNYAVRKFAGYGKLSGKSLDELNAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K +P DF+LWK + EP W+SP+G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 173 ADGKLDPLDFVLWKSAKADEPADVKWQSPFGEGRPGWHIECSAMGCELLGESFDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A W+HNGF+N++ KMSKS GNF TI ++L Sbjct: 233 DLQFPHHENEIAQSEGATG-KPFAQTWMHNGFINVDNEKMSKSLGNFFTIRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID---------- 348 + + A IR ++ +HYR P++++ L +A L + + Sbjct: 286 -KEYDAETIRFFVVRSHYRSPLNYSNVHLDDARGALKRLYTALDLVAPAEVQVDWSNPYA 344 Query: 349 PAVLSALYNDLNTVSAIQALHKLAREST--KNHDLLPIFNASAHILGI------EVCKEH 400 +A+ D T A+ L +LA E K+ ++ + LG+ + + Sbjct: 345 ARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSPEVAGLLKTLGACLGLLQAEPQKFLQAG 404 Query: 401 LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + AIE + R K ++ AD IRK+L +G +L+D T W+ Sbjct: 405 SEGVDAAAIEAQIAARAQAKAAKNWAEADRIRKELLEQGIVLKDSAA------GTTWE 456 >gi|325299474|ref|YP_004259391.1| cysteinyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] gi|324319027|gb|ADY36918.1| cysteinyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] Length = 492 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 167/492 (33%), Positives = 244/492 (49%), Gaps = 43/492 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY H+G+ARP I FD+L+R L++ Sbjct: 1 MENKLIIYNTLSRRKEPFVPLHAPHVGMYVCGPTVYGDPHLGHARPAITFDILFRYLQHL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIP----INDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ + E + ++ K L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLEPMEVVQYYLLRYHKAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQ 173 L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S R +D+ Sbjct: 119 LPPSIEPHASGHIIEQIKLVEEILKNGYAYESQGSVYFDVAKYNKDHHYGVLSGRNLDDV 178 Query: 174 KMGTRV-PEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 TR + K NPADF LWK + P W SPW G PGWH EC+AM YLG+ F Sbjct: 179 INTTRELDGQQEKHNPADFALWKCAQPEHIMRWPSPWSDGFPGWHCECTAMGRKYLGETF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQ+ A W+HN + + G+KM KS GNFIT+ E Sbjct: 239 DIHGGGMDLIFPHHECEIAQA-VASEGHPMVRYWMHNNMITINGQKMGKSLGNFITLEEF 297 Query: 292 L-ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------S 341 + K +++ IR +L HYR +DF+ + L AE L + + S Sbjct: 298 FTGSNKLLAQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLLEGIKNLERITPS 357 Query: 342 TSKGIIDPA-----VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASA------- 389 S I+PA A+ +DLNT I L R D +A+ Sbjct: 358 ASTSGIEPAGLREKCYEAMNDDLNTPIVISHLFDGIRMINTVLDKKATISAADLEELKSV 417 Query: 390 ------HILGIEVCKEHL---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ILG++ E+ + S ++ L++ER+ K ++++D IR L + GF Sbjct: 418 FHLFAFDILGLKAEGENNAAREEAFSKVVDMLLEERMKAKANKDWATSDKIRDSLAALGF 477 Query: 441 ILEDYKNPDNGQ 452 ++D K+ + Sbjct: 478 EVKDTKDGFTWR 489 >gi|329890424|ref|ZP_08268767.1| cysteinyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] gi|328845725|gb|EGF95289.1| cysteinyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] Length = 468 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 183/484 (37%), Positives = 262/484 (54%), Gaps = 47/484 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + I++TL R+ F+ DP+ + +YVCGPTVYD+AHIGNARP +VFDVL RLLR YG Sbjct: 3 LHIHDTLRREKRLFEPRDPNRVSLYVCGPTVYDYAHIGNARPPVVFDVLVRLLRRTYGAD 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y RN+TD+DDKI +A +E AI IT++ ++ D L P P Sbjct: 63 KVVYARNVTDVDDKINAKAAKE------GVAIGEITARYEAAYLADMGLLNVSPPDIAPH 116 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T++I + IQ II G AY A ++FD SS P+YG+ S R +D+ G RV + Sbjct: 117 VTDYIEAITRQIQAIIDAGCAYAAEGHVLFDVSSYPSYGALSGRNLDDMIAGARVEVAPY 176 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKNP DF+LWK S EP W SPWG GRPGWHIECSAM LG DIHGGG+DL+FPH Sbjct: 177 KKNPHDFVLWKPSKADEPSWPSPWGEGRPGWHIECSAMIEETLGLPIDIHGGGIDLVFPH 236 Query: 245 HENEIAQSCCADR-------IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 HENEIAQ CA ++ A W+HNGFL ++ KMSKS GN + +++L+ Sbjct: 237 HENEIAQGVCAHGHAHGEEAHDEYARYWMHNGFLTVDAEKMSKSIGNVLLLHDLV----- 291 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA------- 350 ++ P V+R A+L HYR+P+D+ L ++ L + ++ A Sbjct: 292 --QAMPGEVVRWALLSAHYRQPLDWNQTLLEQSRKNLDRLYGALHRAAGVEAAEVEPPVE 349 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKN---------HDLLPIFNASAHILGIEVCKEH- 400 + ++ +DLNT A+ AL L+ + + + A+A ILG+ Sbjct: 350 FMKSIEDDLNTPGAMAALFALSSDIERGMTAGDEGAVAEAKGRLIAAASILGVLQADPAE 409 Query: 401 ----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +++ + +E L+++R K ++ AD IR +L ++ D G + Sbjct: 410 WFSGVDEGLKAEVEGLLEQRAAARTAKNWAEADRIRDRLNELNVVVMD------GPQGAT 463 Query: 457 WKQK 460 W+ K Sbjct: 464 WRMK 467 >gi|229083409|ref|ZP_04215757.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-44] gi|228699842|gb|EEL52479.1| Cysteinyl-tRNA synthetase [Bacillus cereus Rock3-44] Length = 440 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 167/464 (35%), Positives = 240/464 (51%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y E V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYE--VQYVSNFTDVDDKLIKAANE-- 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + + I + + + +D T L C T PR T ++ +I I+ ++ G+AYE Sbjct: 57 ----LGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIEELVKKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ + T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYYKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLTFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWPQTSTSK---------------------GIIDPAVLSALYNDLNTVSAIQ 366 L + + A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLVEIEKFQLAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 L+ LA + + + F ILG+E+ KE L + IE L+Q+ Sbjct: 345 ELYNLANHANQYLLEEHTSKVVIEAYVKQFETLFGILGLELTKEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILEDT------AQGTRWKR 439 >gi|170699316|ref|ZP_02890365.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] gi|170135808|gb|EDT04087.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] Length = 465 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 175/484 (36%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------LENGETIKSLTDRFIGAMHEDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEKLETNGYAYQAADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D+NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDINTPVAVATLFELAGEVNRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 TGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|78357164|ref|YP_388613.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|109894898|sp|Q30ZH8|SYC_DESDG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|78219569|gb|ABB38918.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 485 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 180/499 (36%), Positives = 247/499 (49%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK +F +YVCG T YD H+G+AR + FDVL R LR+ + Sbjct: 1 MQLYNTLTRKKEKFIPQREGKASVYVCGITAYDLCHLGHARSSVAFDVLVRYLRHTGLD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+VRN TD+DDKII+RA + + + K F +D RL CL +PR Sbjct: 60 -VTFVRNFTDVDDKIIKRAGETGL------TSTEVAEKYMAAFHEDMDRLGCLRADIEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HI +MI L +++I G AY A+ ++ F S +YG S R +D+ + G RV Sbjct: 113 CTQHIGEMIALCEDLISKGKAYSTASGDVYFRVRSFASYGKLSGRDVDDMRSGARVAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG GRPGWHIECSAMS +L DIHGGG DL+FP Sbjct: 173 EKEDPLDFALWKSAKPGEPYWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQ+ A E A W+HNGF+ + KMSKS GNF TI ++L + + Sbjct: 233 HHENEIAQTEAATGKE-FARYWVHNGFVQVNAEKMSKSLGNFSTIRDIL-------QGYL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------------------S 341 +R +L HYR PIDFT + EAE L + QT Sbjct: 285 PETLRYFLLTKHYRSPIDFTFDGMDEAEKNLRRIYQTLNLVENELQKTKWSAAPLPEEVL 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK------------NHDLLPIFNASA 389 + + A A+ +DLNT +A+ + L R + D L + Sbjct: 345 SEMDETERAWNEAMEDDLNTAAALGHIFGLVRLVNRIIEDKTMRKSAQARDALLRMQSMM 404 Query: 390 ----HILGI------EVCKEHLN------KNISIAIEKLVQERLILLKMKKFSSADYIRK 433 +LG+ E +E + + +E L+ ER K K F +D IR+ Sbjct: 405 ARWGAVLGLFTRQPAEFLREMRDCRAARRDVDTARVETLLLERQEARKAKDFERSDAIRE 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L G ++D Sbjct: 465 ELARMGVEVQDTPAGAAWD 483 >gi|57239053|ref|YP_180189.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58578996|ref|YP_197208.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|81819263|sp|Q5HBK5|SYC_EHRRW RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|57161132|emb|CAH58045.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58417622|emb|CAI26826.1| Cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] Length = 457 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 201/473 (42%), Positives = 275/473 (58%), Gaps = 39/473 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R F +D +N+++YVCGPTVYDFAHIGN+R ++++D+L+RLL Y V Sbjct: 3 IYNTLTRSKELFVPLDVNNVKIYVCGPTVYDFAHIGNSRSIVIYDILFRLLNVLY--PKV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY+RNITDIDDKII A+ N I +T++ + F +D RL CL PT++PRAT Sbjct: 61 TYIRNITDIDDKIINVAQNN------NQNIYDVTARYIKAFNEDMGRLNCLKPTYEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I M+ LI+ +I +GHAY +N + FD S P YG S R I E G+R+ + KK Sbjct: 115 ENIDVMLALIEKLINYGHAYICDNTVFFDIESYPAYGKLSGRNIMELIYGSRIDIEVGKK 174 Query: 187 NPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS +YLG+ FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATDIDNKLMSCWPSPWGVGRPGWHIECSAMSYNYLGENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQSCCA A WIHNGFL + KMSKS GNF+T+ +LL++ G Sbjct: 235 PHHENELAQSCCAFPNSYYAKYWIHNGFLTVNHEKMSKSLGNFLTVRQLLDSGIRG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIIDPAVLSA 354 VIR L THYR+P+D+ ++ A+ L++ + + ++S Sbjct: 291 --EVIRYIFLSTHYRKPLDWNDNVVSNAQESLNRIYMALNVTDERLLLDDVEVSDEIISC 348 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL------LPIFNASAHILGIEV--CKEHLNKNIS 406 L +D+NT AI LH++ K D+ + + SA+ LGI +E + Sbjct: 349 LKDDMNTPKAIAVLHEMVTRINKASDIDKKVYFIKVLIKSANFLGILYHSWQEWFKVDND 408 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I +L+ ER + F AD IR+ L KG +L D K+ T W + Sbjct: 409 QDIIQLIHERKMAKTNGDFRKADRIRQILLDKGIVLSDNKDGT-----TLWYR 456 >gi|242050146|ref|XP_002462817.1| hypothetical protein SORBIDRAFT_02g032450 [Sorghum bicolor] gi|241926194|gb|EER99338.1| hypothetical protein SORBIDRAFT_02g032450 [Sorghum bicolor] Length = 571 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 188/509 (36%), Positives = 270/509 (53%), Gaps = 74/509 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +++ +YNT RK +F+ DP + MYVCG T YD +HIG+AR + FDVLYR LRY Sbjct: 71 TRELHLYNTKSRKKEQFRPRDPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYL 130 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 131 DYE--VRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRFSDDFLSDMANLQCLPPS 182 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR ++HI ++I +I+ I+ + AY ++ F + P YG S RK+D+ + G RV Sbjct: 183 VEPRVSDHIHEIINMIKQILDNSCAYVVGGDVYFSVENFPEYGELSGRKLDDNRAGERVA 242 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DL Sbjct: 243 VDERKRNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDL 302 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + T N WIHNGF+N+ +KMSKS GNF+TI +++E Sbjct: 303 IFPHHENEIAQSRAA-CCDSTINYWIHNGFVNVNSQKMSKSLGNFVTIRKVIEM------ 355 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI-------------- 346 + +R+ +L THYR PI++T+++L A L QT Sbjct: 356 -YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLRDCEESCQQQGSNTGNSLP 414 Query: 347 ---------IDPAVLSALYNDLNTVSAIQALHKLAREST------------KNHDLLPIF 385 + +++ +DL+T A+ A+ + + K + L Sbjct: 415 PNTLNYIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQDKRLEALSAL 474 Query: 386 NA----SAHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSAD 429 + +LG+ E ++ +K + + + ++ER K K++ +D Sbjct: 475 DEKIRVVLSVLGLLPSSYHEALQQLRDKALRRASITEELVLQKIEERTAARKAKQYEKSD 534 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IRK+L + G L D G T W+ Sbjct: 535 EIRKELAAVGIALMD------GPNGTTWR 557 >gi|212723404|ref|NP_001131561.1| hypothetical protein LOC100192902 [Zea mays] gi|194691858|gb|ACF80013.1| unknown [Zea mays] Length = 573 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 189/509 (37%), Positives = 270/509 (53%), Gaps = 74/509 (14%) Query: 2 KKKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 +++ +YNT RK +F+ DP + MYVCG T YD +HIG+AR + FDV+YR LRY Sbjct: 73 TRELHLYNTKSRKKEQFRPRDPGGEVGMYVCGITPYDDSHIGHARAYVAFDVVYRYLRYL 132 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 E V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 133 DYE--VRYVRNFTDIDDKIIARANQ------LGEDPFNLSKRFSDDFLLDMANLQCLPPS 184 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR ++HI ++I +I+ I+ + AY ++ F S P+YG S RK+D+ + G RV Sbjct: 185 VEPRVSDHIDEIINMIKQILDNSCAYVVGGDVYFSVDSFPDYGELSGRKLDDNRAGERVS 244 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K+NPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DL Sbjct: 245 VDERKRNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDL 304 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQS A + T N WIHNGF+N+ +KMSKS GNF+TI +++E Sbjct: 305 IFPHHENEIAQSRAA-CCDSTINYWIHNGFVNVNSQKMSKSLGNFVTIRKVIEM------ 357 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII------------- 347 + +R+ +L THYR PI++T+++L L QT I Sbjct: 358 -YHPLALRMFLLGTHYRSPINYTIEQLNVTSDRLYYTYQTLLDCEEICQQQQSNTGNSLP 416 Query: 348 ----------DPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNAS 388 +++ +DL+T A+ A+ + + K L +A Sbjct: 417 ANTLNYIQKLHEEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQDKRLESLSAL 476 Query: 389 -------AHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSAD 429 +LG+ E ++ +K + + + ++ER K K++ +D Sbjct: 477 EEKIRVVLSVLGLLPSSYHEALQQLRDKALRRASITEELVVQKIEERTAARKAKQYEKSD 536 Query: 430 YIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IRK+L + G L D G T W+ Sbjct: 537 EIRKELAAIGIALMD------GPDGTTWR 559 >gi|315498776|ref|YP_004087580.1| cysteinyl-tRNA synthetase [Asticcacaulis excentricus CB 48] gi|315416788|gb|ADU13429.1| cysteinyl-tRNA synthetase [Asticcacaulis excentricus CB 48] Length = 463 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 193/482 (40%), Positives = 258/482 (53%), Gaps = 42/482 (8%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K+++ +TL+R +F +P + MYVCGPTVY++AHIGNARP++VFDVL+RLLRY YG Sbjct: 1 MKLRLSDTLKRHKVDFVPKNPQRVTMYVCGPTVYNYAHIGNARPVVVFDVLFRLLRYIYG 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E+ V Y RNITD+DDKI ++A E I +ITSK + D L L PT Q Sbjct: 61 EEAVIYARNITDVDDKINQKAMAE------GVDIDVITSKFADIYNADMRALNALEPTIQ 114 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR T ++ ++ I +I +GHAY A ++FD S YG+ S R +D+ G RV Sbjct: 115 PRVTQNMSAIVAQIAALIRNGHAYAAEGHVLFDVESYRAYGALSNRSLDDMIAGARVEVA 174 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +KKNP DF+LWK S P EP W SPWG GRPGWHIECSAM LG DIHGGG DLIF Sbjct: 175 PYKKNPQDFVLWKPSKPGEPKWPSPWGEGRPGWHIECSAMIEANLGLPIDIHGGGHDLIF 234 Query: 243 PHHENEIAQSCCADRIE-----KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 PHHENEIAQ CA A W+HNGFL ++ KMSKS GN + +++L+ Sbjct: 235 PHHENEIAQGVCAQHGHSHQEESYARYWMHNGFLTMDAEKMSKSLGNVLLVHDLI----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-------IIDPA 350 + +P VIRLA+L HYR P+D+ L + L + + A Sbjct: 290 --KEFPGEVIRLALLSAHYRAPLDWNSDLLVQTRKRLDGLYEALRKAANVPVVETAVPEA 347 Query: 351 VLSALYNDLNTVSAIQALHKLARESTKNHD-----LLPIFNASAHILGIEV------CKE 399 V+ AL +DL+T + L LA K A+ ++GI K Sbjct: 348 VIDALCDDLSTPRVLAELSALASALEKASQSEKPLAKAQLLAAGALMGILQQEAESWFKG 407 Query: 400 HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + ++S +E L+ R K ++ AD IR +L + + D G WK Sbjct: 408 GADDDLSAKVETLLIARKTARAEKNWAEADRIRNELTALNVEVMD------GPEGATWKL 461 Query: 460 KP 461 K Sbjct: 462 KA 463 >gi|332141401|ref|YP_004427139.1| cysteinyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551423|gb|AEA98141.1| cysteinyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] Length = 460 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 171/480 (35%), Positives = 256/480 (53%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT R+ +F + + +YVCG TVYD +H+G+AR + FDVL R LR+ + Sbjct: 2 LHLYNTRTREKAKFVPLQEGKVGLYVCGITVYDLSHMGHARTYLSFDVLVRYLRHLGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++ +T++ +D + L P +P Sbjct: 61 -VKYVRNITDIDDKIIARANEN------GESFEALTARTIAMMHEDFAAINLLEPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + H+ ++I +IQ ++ G+AY+A + +++FD S +YG S++ +D+ K G RV Sbjct: 114 VSGHMDEIIEIIQRLMDKGYAYQAKSGDVLFDVSKYEDYGKLSKQDLDQLKAGARVEVAA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 GKDDPLDFVLWKTTKPGEPAWQSPWGEGRPGWHIECSAMNHKHLGAHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N+W+H G + + KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCAYDT-PYVNVWMHAGMVQVNDEKMSKSLGNFFTLRDVL-------KEHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------QTSTSKGIIDPAVLS 353 + +R ++ HYR + ++ +T+A+ L + T S G + Sbjct: 286 SETLRFFLMSAHYRSQLSYSQDNITQAKAALERLYTALRGVVVNESTDLSYGGYLARFEA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKEHL----- 401 A+ +DLN A L +ARE + D L + ILG+ Sbjct: 346 AMNDDLNVPEAFSVLFDVARELNRQKDNAEEAGKLAAVLKGLGAILGMLQSDPDTYLKGG 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K +++AD R L +KG +LED G T W++ Sbjct: 406 EGNDDEAAEIEALIKQRNDARASKDWAAADAARDALNAKGVVLED------GPSGTTWRK 459 >gi|326523811|dbj|BAJ93076.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 573 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 188/508 (37%), Positives = 263/508 (51%), Gaps = 74/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 + + +YNT R+ F+ P + MYVCG T YD +HIG+AR + FDVL+R LRY Sbjct: 72 RDMHLYNTRSRRREPFRPRAPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLFRYLRYLD 131 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 E V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 132 YE--VRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRYSDDFLSDMAHLQCLPPSV 183 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI Q++ +I+ II +G AY + ++ F + P Y S RK+D+ + G RV Sbjct: 184 EPRVSDHIDQIVTMIKQIIDNGCAYVVSGDVYFSVDNFPEYRKLSGRKLDDNRAGERVAV 243 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+ YLG FDIHGGG DLI Sbjct: 244 DERKKNPADFALWKAAKDGEPWWDSPWGPGRPGWHIECSAMSAQYLGNSFDIHGGGEDLI 303 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A N W+HNGF+N+ G+KMSKS GNFITI +++E Sbjct: 304 FPHHENEIAQSRAACCDSS-INYWVHNGFVNVNGQKMSKSLGNFITIRKVIEL------- 355 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------------- 346 + +R+ +L THYR PI++TV++L A L QT Sbjct: 356 YHPLALRMFLLGTHYRSPINYTVEQLNVASDRLYYTYQTLRDSEESTQQDQSSSGDSLPF 415 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNAS- 388 + +++ +DL+T A+ A+ + + K L A Sbjct: 416 TTTHCIEKLHEDFETSMSDDLHTSVALAAVSEPLKVMNDLLHTRKGKKQEKRLESLAALE 475 Query: 389 ------AHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADY 430 +LG+ E ++ K + + + ++ER K K+F +D Sbjct: 476 EKVRMVLSVLGLMPSSYHEALQQLRGKALRRACVTEEQVLQKIEERTAARKAKQFGRSDE 535 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWK 458 IR +L + G L D G T W+ Sbjct: 536 IRDELAALGIALMD------GPDGTAWR 557 >gi|172061028|ref|YP_001808680.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MC40-6] gi|229558620|sp|B1YSM8|SYC_BURA4 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|171993545|gb|ACB64464.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria MC40-6] Length = 465 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + + I +T + +D L P + Sbjct: 62 --RVTYVRNITDIDDKIIRRA------LENGETIKSLTDRFIGAMHEDEAALGIQRPDIE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEKLETNGYAYQAADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPQGASWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVQPDALALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTK--NHDLLPIFNASA-----------HILGIE 395 +A+ +D+NT A+ L +LA E + + L A L Sbjct: 346 QRFAAAMNDDINTPVAVATLFELAGEVNRTCDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 TGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|73666934|ref|YP_302950.1| cysteinyl-tRNA synthetase [Ehrlichia canis str. Jake] gi|109894899|sp|Q3YSF3|SYC_EHRCJ RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|72394075|gb|AAZ68352.1| cysteinyl-tRNA synthetase [Ehrlichia canis str. Jake] Length = 459 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 208/476 (43%), Positives = 270/476 (56%), Gaps = 41/476 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL F ++ NI++YVCGPTVY+F HIGNAR ++++DVL+RLL+ Y V Sbjct: 3 IYNTLTGIKEPFIPLNVDNIKVYVCGPTVYNFVHIGNARSIVIYDVLFRLLKLLY--PSV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TYVRNITDIDDKII A+ +I +TS + F +D L CL PT++P+AT Sbjct: 61 TYVRNITDIDDKIINVAQSNGQNI------CEVTSVYIKAFHEDMKMLNCLEPTYEPKAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 ++I MI LIQ +I HGHAY N + F+ S P+YG S+R I E G+RV + KK Sbjct: 115 DNINVMINLIQKLIDHGHAYVDNATVFFNVESYPSYGQLSKRNIKELIYGSRVDIELGKK 174 Query: 187 NPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS YL + FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATEVDNKLMSCWPSPWGLGRPGWHIECSAMSYCYLSENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSCCA A WIHNGFL + G KMSKS GN +T+ +LLE+ G Sbjct: 235 PHHENEIAQSCCAFPGSYYAKYWIHNGFLTVNGEKMSKSLGNVLTVRQLLESGVKG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLS 353 +IR +L THYR+P+D+ L A+ L++ +S + V+ Sbjct: 291 --ELIRYVLLNTHYRKPLDWFNMTLVSAQESLNRMYTALSSVNVDLSLDDDVELSSDVVD 348 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIEV---CKEHLNKN 404 L +D+NT AI LH++ E K D L +A+ LGI Sbjct: 349 CLKDDINTPKAISVLHEMVTEINKTSDVMKKTSLAKTLIKTANFLGILQHSWQDWFRVNE 408 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 I+KL+ ER I F AD IR+ L SKG +L D K+ T W +K Sbjct: 409 NDQEIDKLIDERRIARANNDFKKADDIRQLLLSKGIVLSDNKDGT-----THWYKK 459 >gi|6599476|gb|AAF18750.1|AF163997_1 cysteinyl-tRNA synthetase [Methanococcus maripaludis] Length = 476 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 165/480 (34%), Positives = 237/480 (49%), Gaps = 54/480 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +K+YNTL RK EF+ ++ + ++MYVCGP VYD H+G+ R + D++ R L + Sbjct: 2 LKVYNTLTRKEEEFKTLNKNEVKMYVCGPPVYDTTHLGHGRTYVSLDIIRRYLEHIGY-- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V V N TDIDDKII+RA I+ + + F+ D L P+ Sbjct: 60 TVNLVINFTDIDDKIIKRA------YEKGKDPKEISEQFIKVFLDDMATLKVKPADIYPK 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T HI ++I I+ +I G AY+ + + F+ NYG S +++ G RV Sbjct: 114 VTEHISEIIAFIERLIEKGFAYKTEDGVYFEVKKFKNYGKLSNINLEDLVSGARVETSEK 173 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KKN DF LWK + P EP WESP+G+GRPGWHIECSAMSS YLG+ FDIHGGG DL FPH Sbjct: 174 KKNQKDFALWKTAKPGEPKWESPFGKGRPGWHIECSAMSSKYLGEQFDIHGGGRDLSFPH 233 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + N WIH GF+ + G KMSKS GNFITI ++ + + Sbjct: 234 HENEIAQSSAYSG-KDWVNYWIHTGFVMVNGEKMSKSLGNFITIGDI-------SKEYSP 285 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS--------------------- 343 ++R + HYR PID+T + + + L K + Sbjct: 286 EILRFFFIQRHYRSPIDYTAESMNHVKNNLEKIYNVIENIRISLEKSEKSRIWGENEFLL 345 Query: 344 ---KGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL------------LPIFNAS 388 +A+ +D NTV A++++ +++ K L L + Sbjct: 346 YDILKNSKNNFYNAMNSDFNTVEALKSVFEVSNGVNKYLSLTETPSEGLLLKALDFYKII 405 Query: 389 AHILGI--EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I G+ KE N ++ L++ R L K + +D IR L++ G+ +ED Sbjct: 406 GEIFGLFENYFKESSESNEEEFVKFLIELRSDLRLQKNYEMSDKIRDGLKNLGYQIEDNP 465 >gi|199598530|ref|ZP_03211947.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus HN001] gi|199590572|gb|EDY98661.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus HN001] Length = 468 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 254/492 (51%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A +A + + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIITAA------HKTGEAPLDLAQRFIDAFMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 A+ IP +I +Q++I G+AY + ++ + +YG S + +DE + G Sbjct: 114 ASQMIPDIIDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELDKKEDPIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS ++ W+HNGF+ + + +KMSKS GNFIT++++L+T Sbjct: 234 EFPHHENEIAQSEAKTG-KQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------------------Q 339 V+R M T YR PI ++ L A L++ Q Sbjct: 290 ----DPQVLRFFMAGTQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAVAGVDAQ 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + + ++A+ +D+N + + L LA+ + +DLL ++A Sbjct: 346 ITAELKTLKDRFIAAMDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ N+ I+ LV+ R K F+ +D IR QL ++G ILED Sbjct: 406 LQIFGVVFTDP---TNLDADIDALVKARDAARAAKDFAKSDEIRDQLAAQGIILEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 460 ---PQGTRWRRK 468 >gi|256849116|ref|ZP_05554549.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] gi|256713892|gb|EEU28880.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] Length = 477 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 168/495 (33%), Positives = 253/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAEKFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E GW+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIGWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------ 345 R V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTVTNINYRLAYDTASEES 347 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKLA-----------RESTKNHDLLPIFN 386 + A+ +D N +A+ A++ L + + Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAIYDLLPVVNANANAARADKQELQKFKEKLA 407 Query: 387 ASAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + G++ K + I+ LV++R K ++++D IR QL+ G ++D Sbjct: 408 SWLLVFGVDTNKLCVKNAGSNDDEIDALVKKRDEARANKDWATSDQIRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|306845278|ref|ZP_07477854.1| cysteinyl-tRNA synthetase [Brucella sp. BO1] gi|306274437|gb|EFM56244.1| cysteinyl-tRNA synthetase [Brucella sp. BO1] Length = 506 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 224/502 (44%), Positives = 295/502 (58%), Gaps = 52/502 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 PQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Q Sbjct: 66 AQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQ 125 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMGT 177 PRAT H+ +M +I ++ G AY A + ++ + P YG+ +RR +DE G Sbjct: 126 PRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGA 185 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------- 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 186 RVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGG 245 Query: 228 -------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSK Sbjct: 246 LKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSK 305 Query: 281 SNGNFITINELLETKKFGGRSWPAPVI---------RLAMLMTHYREPIDFTVQRLTEAE 331 S GNFITI ++L W + RL+ML THYREPI++T QRL E+ Sbjct: 306 SLGNFITIRDVLNDGLPQLGEWSDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESA 365 Query: 332 ILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +W +G P AV +AL +DLN+ +AI AL R++ K+ D+ + Sbjct: 366 DELHRWYGLLRDEGFGAPEKLSHAGAVAAALCDDLNSWAAITAL----RQAFKSRDVAAL 421 Query: 385 FNASAHILGI---------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 A ++G+ +V + AI + ERL + K ++ AD IR +L Sbjct: 422 GEGMA-LMGLFDPYFVTASDVPIFAKADVDASAIAARIAERLNFINAKNWAEADRIRDEL 480 Query: 436 ESKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 481 LQEGVQLKDSKDPATGERITTW 502 >gi|56696997|ref|YP_167359.1| cysteinyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] gi|61216118|sp|Q5LRJ6|SYC_SILPO RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|56678734|gb|AAV95400.1| cysteinyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] Length = 465 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 212/455 (46%), Positives = 269/455 (59%), Gaps = 24/455 (5%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 IK++NT R EF IDP N+RMYVCGPTVYD AH+GN RP++VFDVLYRLLR+ YG Sbjct: 4 IKLHNTRTRTKEEFVPIDPDNVRMYVCGPTVYDRAHLGNGRPVVVFDVLYRLLRHVYGAD 63 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYVRN TD+DDKI RA + I IT++ TQ F+ D L L P H PR Sbjct: 64 HVTYVRNFTDVDDKINARAAERGRPIG------DITAETTQWFLDDMGALGALEPDHMPR 117 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN-YGSFSRRKIDEQKMGTRVPEKY 183 AT +IPQM+ +I+ ++ GHAYEA ++F S YG S R +D+ G RV Sbjct: 118 ATQYIPQMVAMIEELVAKGHAYEAEGHVLFAVDSWKEHYGKLSGRSVDDMIAGARVEVAP 177 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 +KKNP DF+LWK STP PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+FP Sbjct: 178 YKKNPMDFVLWKPSTPDLPGWDSPWGRGRPGWHIECSAMSYELLGESFDIHGGGNDLMFP 237 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQSCCA AN W+HN L +EG+KMSKS GNF T+ +LL+ + P Sbjct: 238 HHENEIAQSCCAHPEGHFANFWLHNEMLQVEGKKMSKSLGNFFTVRDLLD------QGIP 291 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----PAVLSALYNDL 359 VIR L THYR+P+D+T ++ EAE L KW + + ++ P + AL +DL Sbjct: 292 GEVIRFVFLSTHYRKPMDWTEKKAKEAEATLRKWWRLTAPLDEMEIKPSPQFIDALTDDL 351 Query: 360 NTVSAIQALHKLARESTKNHDLLPIFNASAHI-----LGIEVCKEHLNKNISIAIEKLVQ 414 NT AI LH+LA+E K++ L + G+ + + A L + Sbjct: 352 NTPGAIAELHRLAKE--KDYAALEAGLEMLGLQETVNFGVASFGFSTSVEVLEAANDLAR 409 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPD 449 + K F AD ++K G L K Sbjct: 410 RWMAYRDAKNFEEADRLKKSALLAGVDLSVSKEGG 444 >gi|300088786|ref|YP_003759308.1| cysteinyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528519|gb|ADJ26987.1| cysteinyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 482 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 166/497 (33%), Positives = 237/497 (47%), Gaps = 62/497 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI NTL F+ + MYVCG T AHIG+A I FDV+ R L Y Sbjct: 1 MKISNTLTGTREVFKPA-ADPVSMYVCGITPQSSAHIGHAMSYINFDVIRRYLLYRGY-- 57 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII +A P + +N F D + L L PR Sbjct: 58 RVKYVQNFTDVDDKIIAKAA------PAGLTPLELADRNIADFQADMSALNILPADAYPR 111 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T IP +I L++ ++ G AYE + F + +YG S R +++ + G R+ Sbjct: 112 VTEEIPAIIELVEGLVARGFAYEVRGSVYFRVRRLADYGKLSHRTLEQMQAGARIEVDET 171 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++P DF+LWK + P EP W SPWG+GRPGWHIECSAMS YLG+ DIHGGG DLIFPH Sbjct: 172 KEDPMDFVLWKATKPGEPAWASPWGQGRPGWHIECSAMSHKYLGETIDIHGGGADLIFPH 231 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + W+HNG L L G KMSKS GN ITI E L + + A Sbjct: 232 HENEIAQSESFTGQKPFVRYWLHNGLLQLGGEKMSKSLGNLITIKEAL-------QKYSA 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------------V 351 +R+ +L +HYR P+ ++ + + AE + Q + K + A Sbjct: 285 DALRVFVLSSHYRSPLTYSDEIVEAAEKGARRLTQAAGDKTVTSEADDPLFDREVCRSRF 344 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKE----- 399 + A+ +D NT A+ AL LAR+ + + + A +LG+ + Sbjct: 345 VEAMDDDFNTPRALAALFDLARDINRLEAEGRPTGKVRALLRELAGVLGLRLESADKTAG 404 Query: 400 ---------------------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 + + A+ ++ R L + K ++ AD +R +L+ Sbjct: 405 DHSGLLVAAAEIWRADGRELPDWDGDAERAMADILSLRAELRREKNYAEADKLRNRLDET 464 Query: 439 GFILEDYKNPDNGQRMT 455 G +++D T Sbjct: 465 GIVIKDTPTGPVWSYKT 481 >gi|227879317|ref|ZP_03997183.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|262047597|ref|ZP_06020552.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] gi|227861086|gb|EEJ68739.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|260572173|gb|EEX28738.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] Length = 477 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 168/495 (33%), Positives = 253/495 (51%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAEKFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E GW+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIGWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------ 345 R V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTVTNINYRLADDTASEES 347 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKLA-----------RESTKNHDLLPIFN 386 + A+ +D N +A+ A++ L + + Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAIYDLLPVVNANANAARADKQELQKFKEKLA 407 Query: 387 ASAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + G++ K + I+ LV++R K ++++D IR QL+ G ++D Sbjct: 408 SWLLVFGVDTNKLCVKNAGSNDDEIDALVKKRDEARANKDWATSDQIRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|227513730|ref|ZP_03943779.1| cysteinyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577] gi|227522453|ref|ZP_03952502.1| cysteinyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290] gi|227083049|gb|EEI18361.1| cysteinyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577] gi|227090405|gb|EEI25717.1| cysteinyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290] Length = 468 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 178/492 (36%), Positives = 257/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK +F+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 2 LQIFNTLTRKKEKFEPVTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+ H ++ I K F++DT L PR Sbjct: 61 -VNYVSNFTDVDDKMINAARENHTTVG------AIAEKYINAFMQDTAALNISKDVTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK-- 182 AT +IP++I ++N+ G+AY + + F P YG +D+ ++G + Sbjct: 114 ATQNIPEIIAFVKNLEDQGYAYNVDGNVYFRARKFPTYGELPHINVDQLEVGASQHVEKG 173 Query: 183 --YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK+S E W+SPWG+GRPGWHIECS MS YLGK DIHGGG DL Sbjct: 174 EFEQKEDPIDFALWKKSKGDEISWDSPWGKGRPGWHIECSVMSMKYLGKTLDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 IFPHHENE AQS + W+HNGF+ + + KMSKS GNFIT+++LL Sbjct: 234 IFPHHENERAQSEAETH-QTFVKYWMHNGFVTIGEDNEKMSKSLGNFITVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIRL M THYR PI ++ + EA+ L K P+ Sbjct: 287 -KKIDGQVIRLLMSTTHYRRPIQYSDASVQEAKSNLKKLQTAFNNSTYRLHNAEAGSDPK 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 T I + A+ +D N + I A+++LA+ S + ++ Sbjct: 346 TEQEVRQIVADFIDAMDDDFNVQNGIAAVYELAKFSNMYSERNVVFQNSLQFIINTLKQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A I GI++ + L + I L+ ER K F +D IR++L+++G +LED Sbjct: 406 AAIFGIKLEQSELKDD---EIWALIHERQQARANKDFIRSDEIREELKARGIVLEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + TR++++ Sbjct: 460 ---PQGTRFRKE 468 >gi|149914707|ref|ZP_01903237.1| pyrroloquinoline quinone biosynthesis protein PqqB [Roseobacter sp. AzwK-3b] gi|149811500|gb|EDM71335.1| pyrroloquinoline quinone biosynthesis protein PqqB [Roseobacter sp. AzwK-3b] Length = 462 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 211/457 (46%), Positives = 274/457 (59%), Gaps = 20/457 (4%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I++YNT R + ++P N+RMYVCGPTVYD AH+GNARP+IVFDVLYRLLR+ YG Sbjct: 1 MTIRLYNTKARAKQVLEPLNPDNVRMYVCGPTVYDRAHLGNARPVIVFDVLYRLLRHVYG 60 Query: 63 EKCVTYVRNITDIDDKIIERA-RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 VTYVRN TD+DDKI RA +N I+ IT++ T F+ D L L P Sbjct: 61 PDHVTYVRNFTDVDDKINARAIENVGKGGDVNAEIARITAQTTHWFLDDMGALGALEPDA 120 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT +IPQMI +I+++I GHAYEA ++F S +YG S R +D+ G+RV Sbjct: 121 MPRATQYIPQMIAMIEDLIGRGHAYEAEGHVLFAVDSYADYGRLSGRSVDDMIAGSRVEV 180 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +K+NP DF+LWK S+ PGW+SPWGRGRPGWHIECSAMS LG+ FDIHGGG DL+ Sbjct: 181 APYKRNPMDFVLWKPSSADLPGWDSPWGRGRPGWHIECSAMSHELLGESFDIHGGGNDLM 240 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSCCA A IW+HN L +EG+KMSKS GNF T+++LLE Sbjct: 241 FPHHENEIAQSCCAHPGSGFARIWMHNEMLQVEGKKMSKSLGNFFTVHDLLE------EG 294 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-QTSTSKGIIDP--AVLSALYND 358 P VIR L THYR+P+D+T ++ EA+ L KW Q +G +P AV+ A+ +D Sbjct: 295 VPGEVIRFVFLSTHYRKPMDWTAEKAREAQATLRKWYRQAEQGEGNAEPYVAVVEAVSDD 354 Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEV-----CKEHLNKNISIAIEKLV 413 LNT AI LH+L D A+ LG+ ++S +L Sbjct: 355 LNTPKAITELHRL-----SQADDRSTLRATLRFLGLMADGVPDWAARPVADLSALETRLA 409 Query: 414 QERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 Q R ++ K FS D ++ L + G + K+ Sbjct: 410 QARAAAMQSKDFSEVDRLKAALVAVGVEVRMSKDGVE 446 >gi|49474075|ref|YP_032117.1| cysteinyl-tRNA synthetase [Bartonella quintana str. Toulouse] gi|61216196|sp|Q6G073|SYC_BARQU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49239579|emb|CAF25936.1| Cysteinyl-tRNA synthetase [Bartonella quintana str. Toulouse] Length = 502 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 226/505 (44%), Positives = 308/505 (60%), Gaps = 53/505 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K++ YNTL RK F ID + +R+YVCGPT+YD+AHIGNAR +IVFDVL+RLLRY YG Sbjct: 2 RKLRFYNTLTRKKENFTPIDATKVRLYVCGPTIYDYAHIGNARSVIVFDVLFRLLRYVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V YVRNITD+DDKI RA EHP + +NDAI +T + QF +DT L CL PT Q Sbjct: 62 NEHVIYVRNITDVDDKINARAACEHPELALNDAIRQLTERTYSQFQQDTMALGCLLPTSQ 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS---IPNYGSFSRRKIDEQKMGTRV 179 PRAT+H+ M LI+ ++ GHAY+ N ++F S P+YG+F++R +DE + G RV Sbjct: 122 PRATDHLEDMRSLIERLLEKGHAYKVQNHVLFSVRSIRNHPHYGAFAKRSLDEMRAGARV 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL--------- 227 +K+ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 182 DVAAYKREEMDFVLWKPSAVGEPGWASPAGIPVLGRPGWHIECSAMSMAKLLAPYGGGLT 241 Query: 228 -----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 VFDIHGGG+DLIFPHHENEIAQSC A E+ AN+W+HNGFL +EG+KMSKS Sbjct: 242 CDDPTANVFDIHGGGIDLIFPHHENEIAQSCSAFGTERMANLWMHNGFLQVEGKKMSKSL 301 Query: 283 GNFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 GNFITI +LE+ F ++W R +ML THYREP+++T QRL ++ Sbjct: 302 GNFITIRSILESDFFEFNGVLTDEMKQNWAGLSARFSMLQTHYREPLNWTAQRLVQSSSE 361 Query: 334 LSKWPQTS-------TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFN 386 L +W + +D +V+ AL +DLNT A+ L K + + + N Sbjct: 362 LYRWYELLCFEREEMEKNEALDDSVIDALSDDLNTPKALTLLRKFYKAGN----AIALAN 417 Query: 387 ASAHILGIEVCKEHLNKNI-----------SIAIEKLVQERLILLKMKKFSSADYIRKQL 435 ++ G+ + +E + + S I++ + ERL L+ K++++AD IR +L Sbjct: 418 GM-NLFGL-LRQEWVQEVECPLFMRKISLNSKFIDQRIAERLRLIHNKEWAAADTIRDEL 475 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 +KG IL+D K+P G+R T W+ + Sbjct: 476 AAKGVILKDGKDPQTGERTTMWEMR 500 >gi|227510715|ref|ZP_03940764.1| cysteinyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189836|gb|EEI69903.1| cysteinyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 468 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 257/492 (52%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++I+NTL RK +F+ + P + MYVCGPTVY++ HIGNAR I FD + R L Y + Sbjct: 2 LQIFNTLTRKKEKFEPVTPGVVNMYVCGPTVYNYIHIGNARSAIAFDTIRRYLEYRGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR+ H ++ I K F++DT L PR Sbjct: 61 -VNYVSNFTDVDDKMINAARENHTTVG------AIAEKYINAFMQDTAALNISKDVTHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK-- 182 AT +IP++I ++N+ G+AY + + F P YG +D+ ++G + Sbjct: 114 ATQNIPEIIAFVKNLEDQGYAYNVDGNVYFRARKFPTYGELPHINVDQLEVGASQHVEKG 173 Query: 183 --YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 K++P DF LWK+S E W+SPWG+GRPGWHIECS MS YLGK DIHGGG DL Sbjct: 174 EFEQKEDPIDFALWKKSKGDEISWDSPWGKGRPGWHIECSVMSMKYLGKTLDIHGGGEDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 IFPHHENE AQS + W+HNGF+ + + KMSKS GNFIT+++LL Sbjct: 234 IFPHHENERAQSEAETH-QTFVKYWMHNGFVTIGEDNEKMSKSLGNFITVHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------------PQ 339 + VIRL M THYR PI ++ + EA+ L K P+ Sbjct: 287 -KKIDGQVIRLLMSTTHYRRPIQYSDASVQEAKSNLKKLQTAFNNSTYRLHNAEAGSDPK 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----------LLPIFNAS 388 T I + A+ +D N + I A+++LA+ + + ++ Sbjct: 346 TEQEVRQIVADFIDAMDDDFNVQNGIAAVYELAKFANMYSERDVVFQNSLQFIINTLKQL 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 A + GI++ + L + I L+ ER K F +D IR++L+++G +LED Sbjct: 406 AAVFGIKLEQSELKDD---EIWALIHERQQARANKDFIRSDEIREELKARGIVLEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + TR++++ Sbjct: 460 ---PQGTRFRKE 468 >gi|227501071|ref|ZP_03931120.1| cysteine--tRNA ligase [Anaerococcus tetradius ATCC 35098] gi|227216844|gb|EEI82242.1| cysteine--tRNA ligase [Anaerococcus tetradius ATCC 35098] Length = 471 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 172/486 (35%), Positives = 253/486 (52%), Gaps = 55/486 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF ID + I+MYVCGPTVYD+ HIGNARP++VFD L R + + + Sbjct: 1 MKIHNTLTRQKEEFIPIDENKIKMYVCGPTVYDYMHIGNARPLVVFDTLRRYMNFRGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC-LAPTHQP 123 V YV N TD+DDKII ++ E + +T K +++D L T P Sbjct: 60 -VKYVVNFTDVDDKIINKSIAE------GISTKEVTDKYIAAYMEDAKDLNIDEENTIHP 112 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV---- 179 RAT + +I ++ +I G AYE+ ++ FD S +YG S + I++ G Sbjct: 113 RATEVMDDIIAFVKGLIDKGMAYESEGDVYFDVSKADDYGKLSGKNIEDLIHGASNRLDR 172 Query: 180 PEKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + KK+P DF LWK++ E W+SPWG GRPGWHIECS MS LG DIH GG Sbjct: 173 ADGSKKKSPVDFALWKKTKKEGEISWKSPWGDGRPGWHIECSTMSKKILGDTIDIHAGGE 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS + +K AN W+HNG + ++G KMSKS GNF T++++ Sbjct: 233 DLEFPHHENEIAQSEGLNG-KKFANYWMHNGMIQVDGSKMSKSLGNFFTLHDI------- 284 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS----------------- 341 + + VIR +L T+YR+PI+FT + + +A L + Sbjct: 285 KKEYDLSVIRFWLLTTNYRQPINFTKEIINQANSSLQRLTNAYFRLEDLKKSQAEKSQTI 344 Query: 342 -----TSKGIIDPAVLSALYNDLNTVSAIQALHKLAR------ESTKNHDLL----PIFN 386 + + +DLNT AI L +A+ + + DL+ ++ Sbjct: 345 NQDLIRELDSFKNKFIEVMDDDLNTADAITVLFDIAKFINTKIDENSDKDLVNKTFDLYK 404 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 + LG+ K+ N ++ IE+L+ +R K K F++AD IR +L G ++D + Sbjct: 405 SLFDTLGLLAKKKEDNVDV-AKIEELIAKRSEAKKAKDFATADAIRDELSHMGITIKDTR 463 Query: 447 NPDNGQ 452 + Sbjct: 464 EGVKWE 469 >gi|323700147|ref|ZP_08112059.1| cysteinyl-tRNA synthetase [Desulfovibrio sp. ND132] gi|323460079|gb|EGB15944.1| cysteinyl-tRNA synthetase [Desulfovibrio desulfuricans ND132] Length = 485 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 179/499 (35%), Positives = 245/499 (49%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL+R+ EF +++ MYVCG T YD HIG+AR +VFDVLYR L++ + Sbjct: 1 MRLYNTLKRRKEEFTPAHNNDVNMYVCGITAYDLCHIGHARSSVVFDVLYRYLKHEGYD- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V ++RN TDIDDKII+RA + + S I K +F D RL P+ +P+ Sbjct: 60 -VNFIRNFTDIDDKIIKRANE------VGKEASEIAEKFIGEFYVDMDRLNIERPSVEPK 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 T HIP+MI L Q +I GHAY + ++ F S YG S R IDE + G R+ Sbjct: 113 CTEHIPEMIALTQRLIDKGHAYATPSGDVYFKVRSFEGYGKLSGRNIDELESGARIAPGE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP WESPWG+GRPGWH+ECSAMS Y DIHGGG DL FP Sbjct: 173 EKEDPLDFALWKAAKPGEPFWESPWGKGRPGWHLECSAMSEKYADLPLDIHGGGQDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQS A + AN W+HNGF+ + KMSKS GNF TI ++L + Sbjct: 233 HHENEVAQSEAATG-KPFANYWVHNGFVQINSEKMSKSLGNFFTIRDILA-------KFL 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP----------------------QTS 341 +R +L HYR P+DF+ L EAE L + + Sbjct: 285 PETLRYFLLTMHYRSPLDFSFDALEEAEKGLKRIYSALNQIDEELARDKWKKSPFPEELV 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK------------NHDLLPIFNA-- 387 ++ A+ +DLNT A+ + R + + DL A Sbjct: 345 KELDDLEKHFAEAMADDLNTAGALGHVFSAIRLAGRVAEDKNLRKSEGGRDLFARIKADM 404 Query: 388 --SAHILGI------EVCKEHLNKN------ISIAIEKLVQERLILLKMKKFSSADYIRK 433 A +LGI E E + + +L+ R K K F+ +D IR Sbjct: 405 ADWASVLGIFERKPAEFLLELRDSRAARAGIDPAKVRELLDARAQARKDKDFARSDAIRD 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L + + D Sbjct: 465 ELAAMQVEVHDTPQGATWD 483 >gi|282163962|ref|YP_003356347.1| cysteinyl-tRNA synthetase [Methanocella paludicola SANAE] gi|282156276|dbj|BAI61364.1| cysteinyl-tRNA synthetase [Methanocella paludicola SANAE] Length = 471 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 164/484 (33%), Positives = 249/484 (51%), Gaps = 49/484 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL K+ +F + ++MYVCGPTVYD+ H+G+AR +VFD + R L+Y + Sbjct: 3 LRFYNTLASKVEDFVPLHDMEVKMYVCGPTVYDYCHMGHARAYVVFDTIRRYLQYKGYK- 61 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV+N TD+DDKI++RA ++ N + K + +D RL L + PR Sbjct: 62 -VTYVQNFTDVDDKILKRAAEQ------NVPPKELAEKFINAYFEDMDRLNILRADYYPR 114 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI-PNYGSFSRRKIDEQKMGTRVPEKY 183 + ++P +I +I+ ++ G+AY ++ + F S+ G+ S + D K+G RV Sbjct: 115 VSQNLPAIIDMIKALVDKGYAYVSDGSVYFSVDSMSEKVGALSHQSYDALKVGARVEVDE 174 Query: 184 HKKNPADFILWKRSTPMEP-GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 K+NP DF LWK S P E WESPWG GRPGWHIECSAMS LG DIHGGGLDL+F Sbjct: 175 RKRNPMDFALWKASKPGEIISWESPWGPGRPGWHIECSAMSMTTLGPNIDIHGGGLDLVF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHE+EI Q+ A WIHNGFL + KMSKS GNF + ++L + + Sbjct: 235 PHHESEIMQTEAYTGKPPFAKYWIHNGFLLVNKEKMSKSLGNFFLVRDVL-------KKF 287 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------------------S 341 +R +L THY+ P+DF Q L +A L + Sbjct: 288 SPDTVRFFILNTHYQSPLDFNDQALEDASRGLERIKNAISGIEARIRSPLAGAASIPGVP 347 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTK-----------NHDLLPIFNASAH 390 + ++L+T A+ + +L R+ + ++L ++ + Sbjct: 348 ERLSESKKRFEERMDDNLDTREALAEIFELTRDVNRWLAEGDMPADQWKEVLDLYGIYSD 407 Query: 391 ILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 +LGI+ + S ++ +V R + K K + ++D IRK+L+ G +ED K Sbjct: 408 VLGIKWTGSMEDLFASELLQLIVDIRDAVRKKKDYETSDLIRKRLKELGITIEDSKEGTK 467 Query: 451 GQRM 454 +R+ Sbjct: 468 IKRI 471 >gi|186684074|ref|YP_001867270.1| cysteinyl-tRNA synthetase [Nostoc punctiforme PCC 73102] gi|186466526|gb|ACC82327.1| cysteinyl-tRNA synthetase [Nostoc punctiforme PCC 73102] Length = 524 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 171/521 (32%), Positives = 244/521 (46%), Gaps = 85/521 (16%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +YNTL R+ F+ ++ ++MY CG TVYD+ H+G+AR IV+DV+ R L++ Sbjct: 24 MTLTLYNTLTRRQEPFETVEAGKVKMYYCGVTVYDYCHLGHARACIVWDVVRRYLQFIGY 83 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V Y++N TDIDDKI+ RA EH ++ + ++ + + +D RL Sbjct: 84 E--VRYIQNFTDIDDKILNRACVEH------SSMEAVANRFIKAYFEDMARLGIREADEY 135 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV--- 179 PRAT+ + + LI + G AY A+ ++ + YG S RK+++ + G Sbjct: 136 PRATHTMNGIQRLIHELEKKGFAYPADGDVYYAVRQFAEYGKLSGRKLEDMQAGKSERVN 195 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 PE KK+P DF LWK + P E WESPWG GRPGWHIECSAM LG DIH G Sbjct: 196 VEDPEYQKKKDPFDFALWKAAKPGETAWESPWGAGRPGWHIECSAMVRDRLGDTIDIHAG 255 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS + A W+HNG + ++G KMSKS GNFITI ELL+ Sbjct: 256 GADLIFPHHENEIAQSEAVTG-KPLARYWLHNGMVKVDGEKMSKSLGNFITIRELLD--- 311 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST-------------- 342 R +RL +L YR PIDFT + + A + Sbjct: 312 ---RGVNPMAVRLFVLTAQYRTPIDFTDEAIAAATNGWHTIKEGLLFGYQYGEKLGWDLG 368 Query: 343 -----------------------SKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH 379 + + ND N + L +LA+E + Sbjct: 369 TGDLGLGTEEEFSQSPIPNPQYPVPNLYVERFQEIVNNDFNFPGGLTVLFELAKELRREG 428 Query: 380 DLL-----------------PIFNASAHILGIEVCKE----HLNKNISIAIEKLVQERLI 418 +L A +LG+E E +N IE +Q+R Sbjct: 429 HILVHEGKTETSPDKLKHQWQTLVTLAGVLGLEAEIEAETDKINGLSDAEIEAKIQQRQE 488 Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 + K F+ +D IR +L+++G L D ++ TRW + Sbjct: 489 ARQGKNFAESDRIRDELQAEGITLIDSRD------GTRWHR 523 >gi|259500940|ref|ZP_05743842.1| cysteine-tRNA ligase [Lactobacillus iners DSM 13335] gi|302190608|ref|ZP_07266862.1| cysteinyl-tRNA synthetase [Lactobacillus iners AB-1] gi|259167634|gb|EEW52129.1| cysteine-tRNA ligase [Lactobacillus iners DSM 13335] Length = 470 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 179/490 (36%), Positives = 259/490 (52%), Gaps = 62/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E N +++ + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKE------NVSVADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS + N W+HNGF+ + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQSEAKTGQK-FVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------T 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLKQAEAVLKRYKNILRNIKERLSEKNDVSDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L HD + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLHDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILEDT-- 459 Query: 448 PDNGQRMTRW 457 + TRW Sbjct: 460 ----PQGTRW 465 >gi|58617054|ref|YP_196253.1| cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] gi|81311364|sp|Q5FHI9|SYC_EHRRG RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|58416666|emb|CAI27779.1| Cysteinyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] Length = 457 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 201/473 (42%), Positives = 275/473 (58%), Gaps = 39/473 (8%) Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCV 66 IYNTL R F +D +N+++YVCGPTVYDFAHIGN+R ++++D+L+RLL Y V Sbjct: 3 IYNTLTRSKELFVPLDVNNVKIYVCGPTVYDFAHIGNSRSIVIYDILFRLLNVLY--PKV 60 Query: 67 TYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRAT 126 TY+RNITDIDDKII A+ N I +T++ + F +D RL CL PT++PRAT Sbjct: 61 TYIRNITDIDDKIINVAQNN------NQNIYDVTARYIKAFNEDMGRLNCLKPTYEPRAT 114 Query: 127 NHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKK 186 +I M+ LI+ +I +GHAY +N + FD S P YG S R I E G+R+ + KK Sbjct: 115 ENIDVMLALIEKLINYGHAYIRDNTVFFDIQSYPAYGKLSGRNIMELIYGSRIDIEVGKK 174 Query: 187 NPADFILWKRSTPMEPG----WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 +P DF+LWK +T ++ W SPWG GRPGWHIECSAMS +YLG+ FDIHGGG DL F Sbjct: 175 HPGDFVLWKPATDIDSKLMSCWPSPWGVGRPGWHIECSAMSYNYLGENFDIHGGGADLQF 234 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENE+AQSCCA A WIHNGFL + KMSKS GNF+T+ +LL++ G Sbjct: 235 PHHENELAQSCCAFPNSYYAKYWIHNGFLTVNHEKMSKSLGNFLTVRQLLDSGIRG---- 290 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP--------QTSTSKGIIDPAVLSA 354 VIR L THYR+P+D+ ++ A+ L++ + + ++S Sbjct: 291 --EVIRYIFLSTHYRKPLDWNDNVVSSAQESLNRIYMALNVTDERLLLDDVEVSDEIISC 348 Query: 355 LYNDLNTVSAIQALHKLARESTKNHDL------LPIFNASAHILGIE--VCKEHLNKNIS 406 L +D+NT AI LH++ K D+ + + SA+ LGI +E + Sbjct: 349 LKDDMNTPKAIAVLHEMVTRINKASDIDKKVYFIKVLIKSANFLGILHHSWQEWFKVDND 408 Query: 407 IAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 I +L+ ER + F AD IR+ L KG +L D K+ T W + Sbjct: 409 QDIIQLIHERKMAKTNGDFIKADRIRQILLDKGIVLSDNKDGT-----TLWYR 456 >gi|115480611|ref|NP_001063899.1| Os09g0556500 [Oryza sativa Japonica Group] gi|113632132|dbj|BAF25813.1| Os09g0556500 [Oryza sativa Japonica Group] gi|125606594|gb|EAZ45630.1| hypothetical protein OsJ_30298 [Oryza sativa Japonica Group] Length = 569 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 189/508 (37%), Positives = 264/508 (51%), Gaps = 74/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++ +YNT R+ FQ P + MYVCG T YD +HIG+AR + FDVLYR LRY Sbjct: 70 RELHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYL- 128 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 129 -DHKVRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRYSDDFLSDMANLHCLPPSV 181 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI Q+I +I+ II + AY ++ F + P YG S RK+D+ + G RV Sbjct: 182 EPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKLDDNRAGERVAV 241 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DLI Sbjct: 242 DERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLI 301 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A N WIHNGF+N+ +KMSKS GNF+TI ++ E Sbjct: 302 FPHHENEIAQSRAACCDSS-INYWIHNGFVNVNSQKMSKSLGNFVTIRKVTEL------- 353 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------------- 346 + +R+ +L THYR PI++T+++L A L QT Sbjct: 354 YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQHQSKAGDPLPV 413 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNAS- 388 + +++ +DL+T A+ A+ + + K L +A Sbjct: 414 NTTNCIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQEKRLESLSAME 473 Query: 389 ------AHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADY 430 +LG+ E ++ K + + + ++ER K K++ +D Sbjct: 474 EKIRMVLSVLGLLPSSYYEALQQLREKALRRASMTEEQVLQKIEERTSARKAKQYEKSDE 533 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWK 458 IRK+L + G L D G T W+ Sbjct: 534 IRKELAAVGIALMD------GPDGTTWR 555 >gi|330996564|ref|ZP_08320446.1| cysteine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329573120|gb|EGG54739.1| cysteine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 494 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 163/494 (32%), Positives = 243/494 (49%), Gaps = 45/494 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ IYNTL RK EF+ I P + MYVCGPTVY AH+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLFIYNTLSRKKEEFKPITPGRVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLQHI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIP----INDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ + E + T +F L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADEGEDKIAKKARLEELEPMEVAQYYTNRFHAAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQ 173 L P+ +P AT HI + I L++ I+ +G+AY + + FD +YG S R +++ Sbjct: 119 LPPSIEPHATGHIIEQIELVKEILDNGYAYVSEGSVYFDVEKYNKTHHYGKLSGRNLEDV 178 Query: 174 KMGTRVPEK-YHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 +R + K N DF LWK + P W SPW G PGWH EC+AM YLG F Sbjct: 179 INNSRALDGVGEKHNQVDFALWKCAQPQHIMRWPSPWSNGFPGWHCECTAMGRKYLGDHF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQ+ A + N W+HN + + G+KM KS GNFIT+ + Sbjct: 239 DIHGGGMDLIFPHHECEIAQA-VASQGSDMVNYWMHNNMITINGQKMGKSLGNFITLAQF 297 Query: 292 L-ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP- 349 + +++ IR +L HYR +DF+ + L +E LS+ + + I P Sbjct: 298 FSGEHESLTQAYSPMTIRFFILQAHYRSTVDFSNEALQASEKGLSRLMEGVANLKRITPT 357 Query: 350 ---------------AVLSALYNDLNTVSAIQALHKLA--------RESTKNHDLLPIFN 386 A+ +DLN+ I L R++T + D+L Sbjct: 358 AGGSVGMAYVDELRRKCYEAMDDDLNSPIVISHLFDACRVINTVVDRKATMSADVLAALA 417 Query: 387 ASAHILGIEV--CKEHL------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 H ++ KE + ++ L+++R+I K ++++D IR L + Sbjct: 418 EVFHTFAFDILGLKEETGGGSGREEAFGKVVDMLLEQRMIAKANKDWATSDKIRDNLAAL 477 Query: 439 GFILEDYKNPDNGQ 452 GF ++D K+ + Sbjct: 478 GFEVKDTKDGFTWK 491 >gi|254688949|ref|ZP_05152203.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 6 str. 870] gi|260754439|ref|ZP_05866787.1| cysteine-tRNA ligase [Brucella abortus bv. 6 str. 870] gi|260674547|gb|EEX61368.1| cysteine-tRNA ligase [Brucella abortus bv. 6 str. 870] Length = 506 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 224/503 (44%), Positives = 293/503 (58%), Gaps = 52/503 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 5 TPQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Sbjct: 65 GAQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTV 124 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMG 176 QPRAT H+ +M +I ++ G AY A + ++ + P YG+ +RR +DE G Sbjct: 125 QPRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAG 184 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------ 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 185 ARVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGG 244 Query: 228 --------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMS 279 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMS Sbjct: 245 GLKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMS 304 Query: 280 KSNGNFITINELL---------ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 KS GNFITI ++L W RL+ML THYREPI++T QRL E+ Sbjct: 305 KSLGNFITIRDVLNDGLPQLGEWGDNTVRDHWAGLAARLSMLQTHYREPINWTAQRLAES 364 Query: 331 EILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ Sbjct: 365 ADELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAA 420 Query: 384 IFNASAHILGI---------EVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ++G+ +V + AI + ERL + K ++ AD IR + Sbjct: 421 LGEGMA-LMGLLDPYFVTVSDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDE 479 Query: 435 LESKGFILEDYKNPDNGQRMTRW 457 L +G L+D K+P G+R+T W Sbjct: 480 LLQEGVQLKDSKDPATGERITTW 502 >gi|255021318|ref|ZP_05293366.1| Cysteinyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] gi|254969181|gb|EET26695.1| Cysteinyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] Length = 471 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 185/481 (38%), Positives = 253/481 (52%), Gaps = 47/481 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 I I++++E + + P + +YVCG TVYDF H+G+AR M+ FD + R LR Sbjct: 6 PPIHIHDSMEGRKLPLSLVQPGKVGIYVCGMTVYDFCHLGHARVMVTFDTVVRYLRARGL 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E VTYVRNITDIDDKII RA + + + +T + +D L C+APT + Sbjct: 66 E--VTYVRNITDIDDKIIRRAAER------GEGLDSLTQRFIDAMHEDEVALGCIAPTVE 117 Query: 123 PRATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT H+ QM+ LI+ ++ GHAY N ++ + S P YG S R ++E G RV Sbjct: 118 PRATQHVGQMLELIETLVRRGHAYAPGNGDVYYAVRSFPAYGRLSGRSLEELHSGARVEP 177 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 K++P DF LWK + P EP W+SPWG GRPGWHIECSAMS LG FDIHGGG DL+ Sbjct: 178 GEDKRDPLDFALWKAAKPGEPAWDSPWGPGRPGWHIECSAMSQETLGCRFDIHGGGADLL 237 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A A W+HNGF+ ++ KMSKS GNF + +LL Sbjct: 238 FPHHENEIAQSQGAGCA--FAQHWMHNGFVRIDEEKMSKSLGNFRLVRDLLPI------- 288 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAV 351 + V+R +L +HYR P++F+ + L +A L++ D P Sbjct: 289 YGGEVLRFFILNSHYRSPLNFSEKLLEQARSGLTRLYTALRELPDDDGSILPEDSWGPRF 348 Query: 352 LSALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGI------EVCK 398 SA+ +D +T A+ L LARE + D L +LGI + + Sbjct: 349 HSAMADDFHTPEALAVLFDLAREINRRRDAGEPFAALARRLRELGAVLGILQRRPEDFLR 408 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 IE + R + + F+ AD +RK+LE G +LED G T W+ Sbjct: 409 GDAAGIDVDWIEGRIAARAAARRERNFAEADRLRKELEECGILLED------GPGGTTWR 462 Query: 459 Q 459 Q Sbjct: 463 Q 463 >gi|326802927|ref|YP_004320745.1| cysteine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651090|gb|AEA01273.1| cysteine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 471 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 155/493 (31%), Positives = 243/493 (49%), Gaps = 63/493 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNTL + EF I+ + MYVCGPTVY++ HIGNAR ++ FDV+ R L Y E Sbjct: 2 LTVYNTLTKAKEEFHPINAGKVNMYVCGPTVYNYIHIGNARSIVAFDVIRRYLEYRGYE- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V +V N TD+DDKII+R+++E + K + +D +L T PR Sbjct: 61 -VNFVSNFTDVDDKIIKRSQEE------GITSRQVADKYIAAYYEDIDKLNVKRATLNPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 +I +I +Q+++ +AY + ++ + S +YG S + ID+ + G Sbjct: 114 VLENIDAIIEFVQDLVDKDYAYVVDGDVYYRARSFSSYGKLSDQSIDDLRSGASERVSAD 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E+ K++ DF LWK + EP W+SPWG GRPGWHIECS MS+ YL DIHGGG DL Sbjct: 174 EQGKKEDSVDFALWKAAKAGEPSWDSPWGAGRPGWHIECSVMSTRYLADTLDIHGGGADL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 +FPHHENE AQS + N W+HNGF+ + +G KMSKS GNF+ ++LL Sbjct: 234 VFPHHENERAQSEARTG-KTFVNYWLHNGFVTMGDDGEKMSKSLGNFVLAHDLL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT------------------ 340 + ++R + HYR P+ F+ L EA+ L + Sbjct: 287 -KEVDPTIVRFFLASAHYRAPLKFSHSNLEEAQRNLERLQTAHDNINYRLQDAKESLADD 345 Query: 341 ---STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI-----------FN 386 +D + + +D N +A+ +++ + + + + Sbjct: 346 EKQLGELQALDEHFIQVMDDDFNVPNALTVIYEALKRINIYMEAPQVSQAVLKAYDQQLS 405 Query: 387 ASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYK 446 I+GIE + + + ++ L++ER K + +D IR++L +G IL+D Sbjct: 406 QWLAIIGIEFQEASI---LDSEVQALIEERDQARLDKNYDRSDAIRQELLDQGIILDDT- 461 Query: 447 NPDNGQRMTRWKQ 459 + TRW++ Sbjct: 462 -----PQGTRWRR 469 >gi|62289637|ref|YP_221430.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82699565|ref|YP_414139.1| cysteinyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308] gi|189023890|ref|YP_001934658.1| cysteinyl-tRNA synthetase [Brucella abortus S19] gi|237815131|ref|ZP_04594129.1| cysteinyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|254693431|ref|ZP_05155259.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya] gi|254697084|ref|ZP_05158912.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59] gi|254729980|ref|ZP_05188558.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 4 str. 292] gi|256257197|ref|ZP_05462733.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|260545608|ref|ZP_05821349.1| cysteinyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260757658|ref|ZP_05870006.1| cysteine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260761485|ref|ZP_05873828.1| cysteine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260883467|ref|ZP_05895081.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|261213685|ref|ZP_05927966.1| cysteine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|297248048|ref|ZP_06931766.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] gi|81309440|sp|Q57E65|SYC_BRUAB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|109894886|sp|Q2YN22|SYC_BRUA2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|229558619|sp|B2S4T7|SYC_BRUA1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|62195769|gb|AAX74069.1| CysS, cysteinyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82615666|emb|CAJ10653.1| Cysteinyl-tRNA synthetase, class Ia [Brucella melitensis biovar Abortus 2308] gi|189019462|gb|ACD72184.1| Cysteinyl-tRNA synthetase, class Ia [Brucella abortus S19] gi|237789968|gb|EEP64178.1| cysteinyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|260097015|gb|EEW80890.1| cysteinyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260667976|gb|EEX54916.1| cysteine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260671917|gb|EEX58738.1| cysteine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260872995|gb|EEX80064.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|260915292|gb|EEX82153.1| cysteine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|297175217|gb|EFH34564.1| cysteinyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] Length = 506 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 224/503 (44%), Positives = 293/503 (58%), Gaps = 52/503 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 5 TPQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Sbjct: 65 GAQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTV 124 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMG 176 QPRAT H+ +M +I ++ G AY A + ++ + P YG+ +RR +DE G Sbjct: 125 QPRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAG 184 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------ 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 185 ARVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGG 244 Query: 228 --------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMS 279 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMS Sbjct: 245 GLKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMS 304 Query: 280 KSNGNFITINELL---------ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 KS GNFITI ++L W RL+ML THYREPI++T QRL E+ Sbjct: 305 KSLGNFITIRDVLNDGLPQLGEWGDNTVRDHWAGLAARLSMLQTHYREPINWTAQRLAES 364 Query: 331 EILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ Sbjct: 365 ADELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAA 420 Query: 384 IFNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ++G+ ++ I AI + ERL + K ++ AD IR + Sbjct: 421 LGEGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDE 479 Query: 435 LESKGFILEDYKNPDNGQRMTRW 457 L +G L+D K+P G+R+T W Sbjct: 480 LLQEGVQLKDSKDPATGERITTW 502 >gi|125564667|gb|EAZ10047.1| hypothetical protein OsI_32351 [Oryza sativa Indica Group] Length = 569 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 189/508 (37%), Positives = 264/508 (51%), Gaps = 74/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 +++ +YNT R+ FQ P + MYVCG T YD +HIG+AR + FDVLYR LRY Sbjct: 70 RELHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYLRYL- 128 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V YVRN TDIDDKII RA Q + + ++ + + F+ D L CL P+ Sbjct: 129 -DHKVRYVRNFTDIDDKIIARANQ------LGEDPFSLSKRYSDDFLSDMANLHCLPPSV 181 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +PR ++HI Q+I +I+ II + AY ++ F + P YG S RK+D+ + G RV Sbjct: 182 EPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKLDDNRAGERVAV 241 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+HYLG FDIHGGG DLI Sbjct: 242 DERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHGGGEDLI 301 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQS A N WIHNGF+N+ +KMSKS GNF+TI ++ E Sbjct: 302 FPHHENEIAQSRAACCDSS-INYWIHNGFVNVNSQKMSKSLGNFVTIRKVTEL------- 353 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGI--------------- 346 + +R+ +L THYR PI++T+++L A L QT Sbjct: 354 YHPLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQHQSKAGDPLPV 413 Query: 347 --------IDPAVLSALYNDLNTVSAIQALHKLAREST---------KNHDLLPIFNAS- 388 + +++ +DL+T A+ A+ + + K L +A Sbjct: 414 NTTNCIQKLHDEFETSMSDDLHTSVALAAISEPLKVMNDLLHTRKGKKQEKRLESLSAME 473 Query: 389 ------AHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADY 430 +LG+ E ++ K + + + ++ER K K++ +D Sbjct: 474 EKIRMVLSVLGLLPSSYYEALQQLREKALRRASMTEEQVLQKIEERTSARKAKQYEKSDE 533 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWK 458 IRK+L + G L D G T W+ Sbjct: 534 IRKELAAVGIALMD------GPDGTTWR 555 >gi|154253106|ref|YP_001413930.1| cysteinyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] gi|187629837|sp|A7HWJ0|SYC_PARL1 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|154157056|gb|ABS64273.1| cysteinyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 192/480 (40%), Positives = 265/480 (55%), Gaps = 44/480 (9%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 K K+ +YNTL R+ F+ +P + MYVCGPTVY+ +HIGNARP +VFDVL Sbjct: 7 KLKLSLYNTLTRQKEIFEPAEPDRVTMYVCGPTVYNRSHIGNARPAVVFDVLA--RLLRR 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + V Y RNITDI+DKII A++ IS+IT K + + +D L LAP Sbjct: 65 LYRHVVYARNITDIEDKIIAAAKE------AGVDISVITEKYARIYREDMGALGVLAPDI 118 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +P+AT I +MI +++ +I G+AY A ++F+ S YG S R D+ G RV Sbjct: 119 EPKATESIAEMISMMERLIASGNAYAAEGHVLFNVPSFAEYGRLSGRDRDDMIAGARVEV 178 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 +KK+PADF+LWK STP +PGW+SPWGRGRPGWHIECSAM +LG+ DIHGGG+DL Sbjct: 179 APYKKDPADFVLWKPSTPEQPGWDSPWGRGRPGWHIECSAMIEKHLGETIDIHGGGIDLQ 238 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENE+AQS CA A W+HNGF+N+ KMSKS GN + ++ELL Sbjct: 239 FPHHENELAQSSCAHGHTPLARFWLHNGFVNMGSEKMSKSLGNVLLVHELLA-------Q 291 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP---------AVL 352 P +RLA+L HYR+P+D++ + L +A+ +L + + + A + Sbjct: 292 APGEAVRLALLNAHYRQPLDWSDEGLAQAKRMLDRLYGALRALSDVKAEPTNDAAPDAFM 351 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILG-IEVCKEHLNKNI 405 AL +DLNT A+ L LA+ + D L + +LG +E+ E Sbjct: 352 EALADDLNTPKALAVLFDLAKRANTETDPGTKAQLKAALIGAGRLLGVLEMDPEAWFAGA 411 Query: 406 SI-------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 +E+L+ R K K F+ AD IR L G +ED G + T W+ Sbjct: 412 GAASHIDGEEVERLIAARNAARKAKDFAEADRIRGALAEMGVAIED------GPQGTSWR 465 >gi|42569504|ref|NP_565717.2| SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding [Arabidopsis thaliana] gi|330253408|gb|AEC08502.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] Length = 563 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 186/508 (36%), Positives = 267/508 (52%), Gaps = 74/508 (14%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 K++ ++NT+ RK F+ + MYVCG T YD +HIG+AR + FDVL R L++ Sbjct: 63 KELWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGY 122 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V+YVRN TD+DDKII RA++ + + ++ + ++F +D +L CL P+ Q Sbjct: 123 E--VSYVRNFTDVDDKIIARAKE------LEEDPISLSRRFCEEFNRDMEQLQCLDPSVQ 174 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 PR ++HIPQ+I LI+ I+ +G+AY+ + +I F P YG S RK+++ + G RV Sbjct: 175 PRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVD 234 Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 KK+PADF LWK + EP WESPWGRGRPGWHIECSAMS+ YLG FDIHGGG+DL+F Sbjct: 235 TRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVF 294 Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302 PHHENEIAQSC A + WIHNGF+ ++ KMSKS GNF TI ++++ + Sbjct: 295 PHHENEIAQSCAACDSSNIS-YWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-------Y 346 Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------------------- 339 +RL ++ THYR PI+++ L A + Q Sbjct: 347 HPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENGSVPS 406 Query: 340 -TSTSKGIIDPAVLSALYNDLNTVSAIQA-------LHKLA------RESTKNHDLLPI- 384 T TS ++++ +DL T + A ++ L +++ + L + Sbjct: 407 DTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIHTRKGKKQARREESLKALE 466 Query: 385 --FNASAHILG---------IEVCKEHLNKNI---SIAIEKLVQERLILLKMKKFSSADY 430 ILG +E KE K + + VQER K K++ +D Sbjct: 467 TTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQRVQERTDARKNKEYERSDA 526 Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWK 458 IRK L G L D T W+ Sbjct: 527 IRKDLAKVGIALMDS------PEGTTWR 548 >gi|189461692|ref|ZP_03010477.1| hypothetical protein BACCOP_02356 [Bacteroides coprocola DSM 17136] gi|189431579|gb|EDV00564.1| hypothetical protein BACCOP_02356 [Bacteroides coprocola DSM 17136] Length = 492 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 165/492 (33%), Positives = 244/492 (49%), Gaps = 43/492 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLTRRKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDID----DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ D + + + ++ K L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLEPMEVVQYYLNRYHKAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQ 173 L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S R +D+ Sbjct: 119 LPPSIEPHASGHIIEQIQLVEGILKNGYAYESQGSVYFDVAKYNKDHHYGKLSGRNLDDV 178 Query: 174 KMGTRV-PEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 TR + K NPADF LWK + P W SPW G PGWH EC+AM YLG+ F Sbjct: 179 INTTRELDGQQEKHNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGRKYLGENF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQS A + W+HN + + G+KM KS GNFIT++E Sbjct: 239 DIHGGGMDLIFPHHECEIAQS-VASQGHDMVRYWMHNNMITINGQKMGKSLGNFITLDEF 297 Query: 292 L-ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 + K +++ A IR +L HYR +DF+ + L AE L + + + I P+ Sbjct: 298 FTGSNKLLTQAYSAMTIRFFILQAHYRSTVDFSNEALQAAEKGLERMMEGVKNLERITPS 357 Query: 351 --------------VLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA--------- 387 A+ +DLNT I L R D +A Sbjct: 358 KTTSGIEPAGLREKCYEAMNDDLNTPIVISHLFDAIRMINTVIDKKATISADDLEELKSV 417 Query: 388 ----SAHILGIEVCKEHL---NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 ILG++ E+ + ++ L+++R+ K ++++D IR L + GF Sbjct: 418 FHTFVFDILGLKAEAENNAAREEAFGKVVDMLLEQRMQAKANKDWATSDKIRDTLAALGF 477 Query: 441 ILEDYKNPDNGQ 452 ++D K+ + Sbjct: 478 EVKDTKDGFTWK 489 >gi|91204303|emb|CAJ71956.1| strongly similar to cysteinyl-tRNA synthetase [Candidatus Kuenenia stuttgartiensis] Length = 492 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 175/514 (34%), Positives = 258/514 (50%), Gaps = 78/514 (15%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +K YN++ +K F+ + ++ MYVCGPTVYD HIG+A+ + +DV+ R LRY Sbjct: 1 MTLKFYNSITKKKEVFKPLVEGHVNMYVCGPTVYDHPHIGHAKSYVSYDVIVRYLRYLGY 60 Query: 63 EKCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 + C YV+NITD+ DDKI+ RA++E +++ T+ + +D Sbjct: 61 KVC--YVQNITDVGHLTDNADAGDDKILARAQRERIE------PAVLVEIYTRSYFEDMD 112 Query: 113 RLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDE 172 L L P PRAT HIP+ I LI+ +I G+AY +N + F+ S YG S RK ++ Sbjct: 113 ALNNLRPDISPRATAHIPEQIELIEKLISKGYAYVSNGSVYFEVSKYREYGKLSGRKQED 172 Query: 173 QKMGTRVPEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 + G R+ K+NP DF LWK++ P W+SPWG G PGWH+ECSAMS YLG+ Sbjct: 173 LEAGARIEINLEKRNPNDFALWKKAEPAHIMRWKSPWGEGFPGWHLECSAMSMKYLGESL 232 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG++ +FPHHE EIAQS A+ + WIHN + + G+KM KS GNF+T+ + Sbjct: 233 DIHGGGIENMFPHHECEIAQSEAANDM-TFVRYWIHNNMVTVNGQKMGKSLGNFVTLKDA 291 Query: 292 LETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT----------- 340 + + IR +L THYR P+DF+ + L A+ L + T Sbjct: 292 F-------KKYHPLTIRFFILSTHYRSPLDFSNEALDAADKGLKRLFNTIKRVRRQIDEA 344 Query: 341 ---------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN------------H 379 A L+A+ D+NT AI AL L++E Sbjct: 345 ANGETTVLVYEKLEEHKKAFLNAMDEDINTSGAIAALFDLSKEVNALLDSGEEVSKKCME 404 Query: 380 DLLPIFNASAH-ILGIEVCKEHLNKNIS------------IAIEKLVQERLILLKMKKFS 426 D+ ++ ILGI ++ + +I + L+ R L K K F Sbjct: 405 DINSLYQELGDGILGIVPVRKEVKADIEDDFSEGDKSVLKEVMGVLIDTRNQLRKEKLFQ 464 Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 +D+IR +L G LED ++ +T WK++ Sbjct: 465 LSDFIRNKLTEIGITLEDTQD------VTLWKKR 492 >gi|49475313|ref|YP_033354.1| cysteinyl-tRNA synthetase [Bartonella henselae str. Houston-1] gi|61216197|sp|Q6G5G9|SYC_BARHE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|49238119|emb|CAF27326.1| Cysteinyl-tRNA synthetase [Bartonella henselae str. Houston-1] Length = 503 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 221/505 (43%), Positives = 304/505 (60%), Gaps = 52/505 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++ YNTL RK F ID + +R+YVCGPTVYD+AHIGNARP+IVFD+L+RLLR+ YG Sbjct: 2 RELRFYNTLTRKKENFIPIDATRVRLYVCGPTVYDYAHIGNARPVIVFDILFRLLRHVYG 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + V Y RNITD+DDKI RA E+P + +NDAI +T QF +DT L CL PT + Sbjct: 62 NEHVIYARNITDVDDKINARAAYEYPELALNDAIRQLTQLTYTQFQQDTMALGCLPPTIE 121 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS---IPNYGSFSRRKIDEQKMGTRV 179 PRAT+H+ +M LI+ ++ GHAY+A N ++F SS P+YGSF++R +DE + G RV Sbjct: 122 PRATDHLEEMRSLIERLLEKGHAYKAENHVLFSVSSIRNDPHYGSFAKRSLDEMRAGARV 181 Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL--------- 227 +K+ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 182 DVASYKREEMDFVLWKPSAEGEPGWTSPAGIPVLGRPGWHIECSAMSMAKLLAPYGGGLT 241 Query: 228 -----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSN 282 VFDIHGGGLDLIFPHHENEIAQSC A E+ AN+W+HNGFL +EG+KMSKS Sbjct: 242 CDDPTENVFDIHGGGLDLIFPHHENEIAQSCSAFGTERMANLWMHNGFLQVEGKKMSKSL 301 Query: 283 GNFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL 333 NFITI +LE+ F ++W R +ML THYREP+++T QRL ++ Sbjct: 302 SNFITIRSILESDFFEFNGVLTNEMKQNWAGLSARFSMLQTHYREPLNWTAQRLMQSSSE 361 Query: 334 LSKWPQT--------STSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 L +W + +ID ++++AL +DLNT A+ L K + Sbjct: 362 LYRWYELLRCEKTEMEKKNEVIDDSLINALSDDLNTPKALTLLRKFYKRGN-----AVSL 416 Query: 386 NASAHILGIEVCKEHLNKN----------ISIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + + G+ + + I++ + ERL L+ K++++AD IR +L Sbjct: 417 ASGMNFFGLLRQEWVRDGKCPLFMRKTSLDEKFIDQRIAERLRLIHNKEWTAADTIRDKL 476 Query: 436 ESKGFILEDYKNPDNGQRMTRWKQK 460 ++G +L+D K+P G+R T W+ K Sbjct: 477 AAEGIVLKDIKDPQTGERTTMWEIK 501 >gi|256254697|ref|ZP_05460233.1| cysteinyl-tRNA synthetase [Brucella ceti B1/94] gi|261221878|ref|ZP_05936159.1| cysteinyl-tRNA synthetase [Brucella ceti B1/94] gi|260920462|gb|EEX87115.1| cysteinyl-tRNA synthetase [Brucella ceti B1/94] Length = 506 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 224/502 (44%), Positives = 294/502 (58%), Gaps = 52/502 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 PQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Q Sbjct: 66 AQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQ 125 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMGT 177 PRAT H+ +M +I ++ G AY A + ++ + P YG+ +RR +DE G Sbjct: 126 PRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGA 185 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------- 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 186 RVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGG 245 Query: 228 -------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSK Sbjct: 246 LKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSK 305 Query: 281 SNGNFITINELLETKKFGGRSWPAPVI---------RLAMLMTHYREPIDFTVQRLTEAE 331 S GNFITI ++L W + RL+ML THYREPI++T QRL E+ Sbjct: 306 SLGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESA 365 Query: 332 ILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 366 DELHRWYGLLRDEGFGTPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAAL 421 Query: 385 FNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQL 435 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 422 GEGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDEL 480 Query: 436 ESKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 481 LQEGVQLKDSKDPATGERITTW 502 >gi|67458460|ref|YP_246084.1| cysteinyl-tRNA synthetase [Rickettsia felis URRWXCal2] gi|75537070|sp|Q4UND9|SYC_RICFE RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|67003993|gb|AAY60919.1| Cysteinyl-tRNA synthetase [Rickettsia felis URRWXCal2] Length = 459 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 194/477 (40%), Positives = 276/477 (57%), Gaps = 35/477 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F D + ++MYVCGPTVYD HIGN+R ++V+D+LYR++ Sbjct: 1 MQIQFHLYNTLSRTKEVFNPQDQTKVKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +GE+ V YVRNITD+DDKII+RA ++ I+ +T K TQ+F + L CL P+ Sbjct: 61 FGEQSVKYVRNITDVDDKIIDRAEL------LSITINELTDKVTQEFHTNMAYLGCLLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+N + FD S PNY S R ++E G R+ Sbjct: 115 IEPKATEHIDVMIEIIERLIAKDHAYIADNHVYFDVLSAPNYTELSNRNLEEMFEGVRIE 174 Query: 181 EKYHKKNPADFILWKRSTPME---PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+P DF+LWK + P E ++SPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKHPQDFVLWKPAKPNESANMNFKSPWGFGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ L++ Sbjct: 235 ADLIFPHHTNEIAQSRCAFPDSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRNLMD---- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----IIDPAVLS 353 + V+RL +L +HYR P+D+ + + +A+ L W + + + + Sbjct: 291 --KEISGEVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHNFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-------ESTKNHDLLPIFNASAHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ A+ E K + I A+ +G+ + E N Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFISKTEEEKQLNASAII-TCANFIGLMNKTPHEWFNSG 407 Query: 405 ISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 + I +L+ +RL K K + AD IR QL + ILED + T W+++ Sbjct: 408 VDELYINELLNKRLEAKKQKNWLLADQIRNQLLEEKIILEDKPDGT-----TIWRKE 459 >gi|17987555|ref|NP_540189.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|225852198|ref|YP_002732431.1| cysteinyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|256044370|ref|ZP_05447274.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|256113213|ref|ZP_05454081.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|256264294|ref|ZP_05466826.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|260563723|ref|ZP_05834209.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|265990788|ref|ZP_06103345.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|265994624|ref|ZP_06107181.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|38258395|sp|Q8YG89|SYC_BRUME RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|254765182|sp|C0RI19|SYC_BRUMB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|17983259|gb|AAL52453.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|225640563|gb|ACO00477.1| cysteinyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|260153739|gb|EEW88831.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|262765737|gb|EEZ11526.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|263001572|gb|EEZ14147.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|263094565|gb|EEZ18363.1| cysteinyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|326408697|gb|ADZ65762.1| cysteinyl-tRNA synthetase [Brucella melitensis M28] gi|326538421|gb|ADZ86636.1| cysteinyl-tRNA synthetase [Brucella melitensis M5-90] Length = 506 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 224/503 (44%), Positives = 294/503 (58%), Gaps = 52/503 (10%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ Y Sbjct: 5 TPQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVY 64 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 G + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Sbjct: 65 GAQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTV 124 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMG 176 QPRAT H+ +M +I ++ G AY A + ++ + P YG+ +RR +DE G Sbjct: 125 QPRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAG 184 Query: 177 TRVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------ 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 185 ARVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGG 244 Query: 228 --------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMS 279 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMS Sbjct: 245 GLKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMS 304 Query: 280 KSNGNFITINELLETKKFGGRSWPAPVI---------RLAMLMTHYREPIDFTVQRLTEA 330 KS GNFITI ++L W + RL+ML THYREPI++T QRL E+ Sbjct: 305 KSLGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAES 364 Query: 331 EILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLP 383 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ Sbjct: 365 ADELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAA 420 Query: 384 IFNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQ 434 + A ++G+ ++ I AI + ERL + K ++ AD IR + Sbjct: 421 LGEGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDE 479 Query: 435 LESKGFILEDYKNPDNGQRMTRW 457 L +G L+D K+P G+R+T W Sbjct: 480 LLQEGVQLKDSKDPATGERITTW 502 >gi|309806486|ref|ZP_07700490.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|308167085|gb|EFO69260.1| cysteine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] Length = 470 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 178/490 (36%), Positives = 258/490 (52%), Gaps = 62/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E N +++ + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKE------NVSVADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS + N W+HNGF+ + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQSEAKTGQK-FVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------T 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAEAVLKRYKNILRNIQERLSEKNDVSDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILEDT-- 459 Query: 448 PDNGQRMTRW 457 + TRW Sbjct: 460 ----PQGTRW 465 >gi|241764153|ref|ZP_04762188.1| cysteinyl-tRNA synthetase [Acidovorax delafieldii 2AN] gi|241366490|gb|EER60990.1| cysteinyl-tRNA synthetase [Acidovorax delafieldii 2AN] Length = 459 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 178/478 (37%), Positives = 247/478 (51%), Gaps = 44/478 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++IYNTL R + +F ++P ++RMYVCG T+YD HIG+AR M+ FDV+ R L+ Sbjct: 1 MSLRIYNTLSRALEDFSPLEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGL 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDIDDKII RA + I +T + +D L P + Sbjct: 61 --RVTYVRNITDIDDKIIRRA------LERGITIRQLTDEMIAAMHQDIGALGIEPPAVE 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ LI + G AY A N ++ + YG S + +DE + G RV Sbjct: 113 PRATEYVPQMLSLIGQLEGKGLAYRATNGDVNYSVRKFAGYGKLSGKSLDELRAGERVAV 172 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 + K++P DF+LWK + P EP W+SP+G GRPGWHIECSAMS LG+ FDIHGGG Sbjct: 173 QDGKEDPLDFVLWKSAKPEEPPEAKWDSPFGTGRPGWHIECSAMSCATLGETFDIHGGGA 232 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + A W+HNGF+ ++ KMSKS GNF TI ++L Sbjct: 233 DLQFPHHENEIAQSEGATG-KPLAKFWVHNGFVRVDNEKMSKSLGNFFTIRDVL------ 285 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----TSTSKGIIDPA--- 350 + + A +R ++ HYR ++++ L +A L + + ID A Sbjct: 286 -QQYDAETVRFFIVRAHYRSALNYSDAHLDDARQALKRLYTALSLVAPSEVASIDWADPY 344 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEHLNKNI 405 +A+ D T AI L LA E K L + A A LG+ Sbjct: 345 AARFKAAMDEDFGTPEAIAVLFDLASEVNKTRSPQLAGLLKALAGCLGLLQGDPQAFLQA 404 Query: 406 SIAIEKLVQERLILLKM-----KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 ++ + I + K F+ AD IR L ++G +L+D T W+ Sbjct: 405 GAGFDEAAIQAQIAARAAAKAGKDFAEADRIRNALLAQGIVLKDSAA------GTTWE 456 >gi|298528309|ref|ZP_07015713.1| cysteinyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298511961|gb|EFI35863.1| cysteinyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 485 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 179/499 (35%), Positives = 252/499 (50%), Gaps = 67/499 (13%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + IYNTL R +F ++P +RMYVCG T YD+ HIG+AR +VFDVL R LRY Sbjct: 1 MLIYNTLHRAKEKFVPLEPGKVRMYVCGITAYDYCHIGHARSCVVFDVLVRYLRYLGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V++VRN TD+DDKII+RA +E + K + F D L L +PR Sbjct: 59 HVSFVRNFTDVDDKIIKRAEEEGL------DSDQVAEKYIEAFYLDMDELNVLKADVEPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT HI +MI + ++++ G AY + +I F +P YG S R I+E + G+R+ Sbjct: 113 ATRHIEEMIQVTKSLLDKGFAYITSGKDIYFRVRRMPRYGQLSGRNIEELQSGSRIAPDE 172 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K++P DF LWK + P EP W+SPWG GRPGWH+EC+AMS YLG FDIHGGG DL FP Sbjct: 173 EKEDPLDFALWKTAKPGEPSWDSPWGAGRPGWHLECTAMSEKYLGIPFDIHGGGQDLAFP 232 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE AQS A E W+HNGF+ ++ KMSKS GNFITI +++ + + Sbjct: 233 HHENEKAQSEAAFDRE-FVKYWVHNGFVRVDSEKMSKSLGNFITIRDIM-------KDFH 284 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSK----------------------WPQTS 341 V+R +L HYR P+D++ L E E L + +P+ S Sbjct: 285 GEVLRFFLLTKHYRSPLDYSDGSLEETEKALKRVYWAKTGLQKELQKEKWSKGQGFPEAS 344 Query: 342 TSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD----------------LLPIF 385 + A+ +DLNT A+ + L R + + + +L + Sbjct: 345 QELQDLASKWDQAMQDDLNTAEAVGYVFGLVRLANRMLEDKTFRKSEAGKEIIQQMLGML 404 Query: 386 NASAHILGI-----EVCKEHLN-------KNISIAIEKLVQERLILLKMKKFSSADYIRK 433 LG+ E E L ++++V +R K K F +AD IR+ Sbjct: 405 EGWGDALGVFQRSGEEFLEQLKLMRCNRLDIDPQTVQEMVLKRQQARKDKDFETADNIRE 464 Query: 434 QLESKGFILEDYKNPDNGQ 452 +L +KG + D Sbjct: 465 ELTAKGIEVMDTPEGPRWD 483 >gi|319407042|emb|CBI80679.1| Cysteinyl-tRNA synthetase [Bartonella sp. 1-1C] Length = 502 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 225/503 (44%), Positives = 308/503 (61%), Gaps = 51/503 (10%) Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63 +++ YNTL R+ +F ID + +R+YVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YGE Sbjct: 3 ELRFYNTLTRRKEDFIPIDATKVRLYVCGPTVYDYAHIGNARPVIVFDVLFRLLRHVYGE 62 Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123 V YVRNITD+DDKI +A ++P + +NDAI +T + QF +DT L CL PT QP Sbjct: 63 NHVIYVRNITDVDDKINAKAALQYPDLELNDAIHQLTEHTSYQFQQDTLALGCLPPTSQP 122 Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQKMGTRVP 180 RAT+H+ ++ +LI+ ++ GHAY A+N I+F S+ P YG F++R +DE + G R+ Sbjct: 123 RATDHLEEIRFLIERLLEKGHAYIADNHILFSVGSMGDNPRYGMFAKRSLDEMRAGARID 182 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL---------- 227 +KK DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 183 VASYKKGEMDFVLWKPSAQGEPGWISPAGISVLGRPGWHIECSAMSMAKLLSPYGGGFIC 242 Query: 228 ----GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283 +FDIHGGG+DLIFPHHENEIAQSC E+ AN W+HNGFL +EG+KMSKS G Sbjct: 243 EDPTANIFDIHGGGIDLIFPHHENEIAQSCSVFGTERMANFWMHNGFLQVEGKKMSKSLG 302 Query: 284 NFITINELLETKKFG---------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334 NFITI LLE F R W IR +ML THYREP+++T+QRL ++ L Sbjct: 303 NFITIRSLLENDFFEFADILSAEVKRIWAGLSIRFSMLQTHYREPLNWTMQRLVQSSSEL 362 Query: 335 SKWPQTSTSK-------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA 387 +W + S+ +D +++ L NDLNT + I L K +E H+++ + + Sbjct: 363 YRWYELLRSERCCLDDNQTVDSSLIKTLSNDLNTSNTITILRKFYKE----HNIIALAHG 418 Query: 388 SAHILGIEVCKEHLNKNIS----------IAIEKLVQERLILLKMKKFSSADYIRKQLES 437 LG+ + K I++ + ERL L+ K++ +AD IR +L + Sbjct: 419 M-DFLGLLRQELVKEKECPLFVGKTHLNLQFIDQRIAERLALIHNKEWEAADKIRGELAA 477 Query: 438 KGFILEDYKNPDNGQRMTRWKQK 460 +G L+D K+P G+R+T W+ K Sbjct: 478 EGIFLKDSKDPQTGERITTWEMK 500 >gi|229552880|ref|ZP_04441605.1| cysteine--tRNA ligase [Lactobacillus rhamnosus LMS2-1] gi|258540510|ref|YP_003175009.1| cysteinyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] gi|229313749|gb|EEN79722.1| cysteine--tRNA ligase [Lactobacillus rhamnosus LMS2-1] gi|257152186|emb|CAR91158.1| Cysteinyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] Length = 468 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 175/492 (35%), Positives = 254/492 (51%), Gaps = 61/492 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ R+ F+ + P IRMYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 2 LTLYNTMSRQKEPFKPLHPGEIRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGFK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VTYV N TD+DDKII A +A + + F++DTT L T PR Sbjct: 61 -VTYVSNFTDVDDKIITAA------HKTGEAPLDLAQRFIDAFMEDTTALGIEPATAHPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 A+ IP ++ +Q++I G+AY + ++ + +YG S + +DE + G Sbjct: 114 ASQMIPDIVDFVQDLIAKGYAYAVDGDVYYRARKFKHYGELSHQNVDELEEGASQHITQE 173 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 E K++P DF LWK + P E W+SPWG+GRPGWHIECS MS+ LG FDIHGGG DL Sbjct: 174 ELDKKEDPIDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTQLLGDTFDIHGGGQDL 233 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFG 298 FPHHENEIAQS ++ W+HNGF+ + + +KMSKS GNFIT++++L+T Sbjct: 234 EFPHHENEIAQSEAKTG-KQFVRYWMHNGFVTIGEDDQKMSKSLGNFITVHDILKTV--- 289 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWP-------------------Q 339 V+R M T YR PI ++ L A L++ Q Sbjct: 290 ----DPQVLRFFMAGTQYRMPIRYSEANLKNAANSLNRLKIARENLVYRRANAADGVDAQ 345 Query: 340 TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKN-----------HDLLPIFNAS 388 + + ++A+ +D+N + + L LA+ + +DLL ++A Sbjct: 346 ITAELKTLKDRFIAAMDDDVNVQNGLTVLFDLAKLLNEYANEDTVKQESVNDLLNQYDAW 405 Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 I G+ N+ I+ LV+ R K F+ +D IR QL ++G ILED Sbjct: 406 LQIFGVVFTDP---TNLDADIDALVKARDAARAAKDFAKSDEIRDQLAAQGIILEDT--- 459 Query: 449 DNGQRMTRWKQK 460 + TRW++K Sbjct: 460 ---PQGTRWRRK 468 >gi|115352164|ref|YP_774003.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria AMMD] gi|122322791|sp|Q0BDV4|SYC_BURCM RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|115282152|gb|ABI87669.1| cysteinyl-tRNA synthetase [Burkholderia ambifaria AMMD] Length = 465 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 174/484 (35%), Positives = 247/484 (51%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + ++IYNTL R F +RMYVCG TVYD+ H+G+AR ++VFD++ R LR Sbjct: 2 ESLRIYNTLARDKQVFVPRQSGEVRMYVCGITVYDYCHVGHARMLVVFDLVQRWLRAIGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 VTYVRNITDI+DKII RA + + I +T + +D L P + Sbjct: 62 --RVTYVRNITDIEDKIIRRA------VENGETIKSLTDRFIGAMHEDEAALGIQRPDLE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT IPQM+ +I+ + +G+AY+A + ++ + NYG S + +D+ + G RV Sbjct: 114 PRATQFIPQMLGMIEKLETNGYAYQAADGDVNYSVRKFANYGKLSGKSLDDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEP---GWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWKR+ +P W S +G GRPGWHIECSAM LG+ FDIHGGG Sbjct: 174 NDAKEDPLDFVLWKRAKADDPPGATWASKYGMGRPGWHIECSAMGCTLLGEHFDIHGGGQ 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A + N W+HNGF+ ++ KMSKS GNF TI E+LE Sbjct: 234 DLQFPHHENEIAQSEGATG-QTFVNYWMHNGFVQVDNEKMSKSLGNFFTIREVLER---- 288 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTS----------KGIID 348 + A V+R ++ THYR P++++ L +A L++ Sbjct: 289 ---YDAEVMRFFIVRTHYRSPLNYSDVHLDDARASLTRLYTALKDVEPDALALDWNEPHA 345 Query: 349 PAVLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASA-----------HILGIE 395 +A+ +D+NT A+ L +LA E + D L A L Sbjct: 346 QRFAAAMNDDINTPVAVATLFELAGEINRTRDASLARQLKQLAGLLGLLGREPRAFLQQA 405 Query: 396 VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + IE + R+ + K ++ AD IR +L G LED T Sbjct: 406 TGAAQAGGLAADEIEAKIAARVAAKQAKDYAEADRIRAELLDAGIALEDKPGGS-----T 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|291543500|emb|CBL16609.1| cysteinyl-tRNA synthetase [Ruminococcus sp. 18P13] Length = 464 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 251/477 (52%), Gaps = 48/477 (10%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT+ RK E + +Y CGPTVY+F HIGNARP+ FDVL R L + Sbjct: 1 MYLYNTMSRKKEELLPQQGKQVNIYACGPTVYNFIHIGNARPICAFDVLRRYLTWRGY-- 58 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N TD+DDKII+RA +E + + + K ++ D L + P+ Sbjct: 59 TVKYVQNFTDVDDKIIKRANEE------GSSAAQVAEKYIAEYKTDAHGLNVMDADVHPQ 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T + +I ++ ++ GHAYEA+ ++ F T+S P YG S+ +++ + G R+ Sbjct: 113 VTTCMQDIIDFVKALVDSGHAYEADGDVYFRTASFPEYGKLSKNSMEDLQAGARIGVDER 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 K++ DF +WK + P EP W+SPWG+GRPGWHIECSAMS YLG DIH GG DLIFPH Sbjct: 173 KESALDFAVWKAAKPGEPYWDSPWGKGRPGWHIECSAMSRKYLGDTLDIHCGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS + AN+W+HNG++N++ +KMSKS GNF T E+ E + Sbjct: 233 HENEIAQSESVTG-KPLANLWMHNGYINVDNKKMSKSLGNFFTAREVAE-------KYGY 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW--------------------PQTSTSK 344 V+R M+ HYR PI++ V+ L + L + P + Sbjct: 285 EVVRYMMVQAHYRSPINYCVELLDACKASLERLYTCRDTLDRAIANAPAGAADPDSLALF 344 Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDL-----------LPIFNASAHILG 393 A ++A+ +DLNT + L L R+ + +F+ +LG Sbjct: 345 DQRKQAFITAMDDDLNTADGVSVLFDLVRDLNTRSNDPATTKDTLTAGARLFDELTGVLG 404 Query: 394 IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 + ++ N+ I +++LV R + K K F+ AD +R ++ + G+ +++ + Sbjct: 405 LLYNRKQGNE-IPAQVQELVDARTVARKAKDFAEADRLRDEIAALGYAVKETRQGVE 460 >gi|157803268|ref|YP_001491817.1| cysteinyl-tRNA synthetase [Rickettsia canadensis str. McKiel] gi|187630858|sp|A8EXE9|SYC_RICCK RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157784531|gb|ABV73032.1| cysteinyl-tRNA synthetase [Rickettsia canadensis str. McKiel] Length = 459 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 197/476 (41%), Positives = 275/476 (57%), Gaps = 35/476 (7%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ + +YNTL R F+ D +N++MYVCGPTVYD HIGN+R V+D+LYR+L Sbjct: 1 MQIQFHLYNTLTRTKELFRPQDQANVKMYVCGPTVYDNPHIGNSRSAAVYDLLYRILIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +G V Y+RNITD+DDKII+RA + I+ +T K TQ+F + L C P+ Sbjct: 61 FGSTAVKYIRNITDVDDKIIDRAEL------LGSTINELTDKVTQEFHINMEYLGCKLPS 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY A+ + F+ S PNY S R ++E G RV Sbjct: 115 IEPKATEHIDIMIEIIERLIAKKHAYIADKHVYFNVLSAPNYTELSNRNLEEMFEGVRVE 174 Query: 181 EKYHKKNPADFILWKRSTPME---PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 KK+P DF+LWK + P E ++SPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 NSKTKKHPQDFVLWKPAKPNESANMNFDSPWGLGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DLIFPHH NEIAQS CA A W+H+GFL + G KMSKS GNFIT+ +L++ Sbjct: 235 ADLIFPHHTNEIAQSRCAFPSSTYAKYWVHHGFLTVNGEKMSKSLGNFITVRDLMD---- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK-----GIIDPAVL 352 + VIRL +L +HYR P+D+ + + +A+ L W + + II + Sbjct: 291 --KEISGEVIRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIVNINLQKIDIIPNDFM 348 Query: 353 SALYNDLNTVSAIQALHKLARES-TKNHDLLPIFNAS-----AHILGI--EVCKEHLNKN 404 +L +D+NT A++ ++ AR T + FNAS A+ +G+ + E N Sbjct: 349 QSLLDDMNTPLAVKIINDYARGVFTSTTEEEKKFNASNLITCANFIGLMNKTPHEWFNSG 408 Query: 405 ISIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 ++ I +LV +RL K K + AD IR QL + +LED + T W++ Sbjct: 409 VNELYINELVNKRLEAKKQKNWLLADQIRNQLLEQQIVLEDKPD------GTIWRK 458 >gi|295692211|ref|YP_003600821.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus ST1] gi|295030317|emb|CBL49796.1| Cysteinyl-tRNA synthetase [Lactobacillus crispatus ST1] Length = 477 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 167/495 (33%), Positives = 252/495 (50%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + K F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAEKFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------ 345 R V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTLTNINYRLADDTASEES 347 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKLA-----------RESTKNHDLLPIFN 386 + A+ +D N +A+ A++ L + + Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAIYDLLPVVNANANAARADKQELQKFKEKLA 407 Query: 387 ASAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + G++ K + I+ LV++R K ++++D IR QL+ G ++D Sbjct: 408 SWLLVFGVDTNKLCVKNAGSNDDEIDALVKKRDEARANKDWATSDQIRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|312874864|ref|ZP_07734883.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|325912411|ref|ZP_08174806.1| cysteine--tRNA ligase [Lactobacillus iners UPII 143-D] gi|311089609|gb|EFQ48034.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|325475753|gb|EGC78924.1| cysteine--tRNA ligase [Lactobacillus iners UPII 143-D] Length = 470 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 176/490 (35%), Positives = 259/490 (52%), Gaps = 62/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E N +++ + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKE------NVSVADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + I+E + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGRLSGQNIEELEEGASQHVSVE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS + N W+HNGF+ + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQSEAKTGQK-FVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ-----------------T 340 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAEAVLKRYKNILRNIQERLSEKNDVSDS 344 Query: 341 STSKGIIDP--AVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNA 387 ++ +ID ++A+ +D N +A+ +H+L+ D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELSLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+++ E N + ++KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TVQKLVDQRNLARQNKDWATSDQIRDELLAKGIILEDT-- 459 Query: 448 PDNGQRMTRW 457 + TRW Sbjct: 460 ----PQGTRW 465 >gi|114765791|ref|ZP_01444886.1| cysteinyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601] gi|114541898|gb|EAU44934.1| cysteinyl-tRNA synthetase [Roseovarius sp. HTCC2601] Length = 461 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 210/455 (46%), Positives = 272/455 (59%), Gaps = 14/455 (3%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M I + N+ RK F+ IDP N+R+YVCGPTVYD AH+GNARP IVFDVL+RL+R Sbjct: 1 MDVPIWLTNSRTRKKELFEPIDPDNVRIYVCGPTVYDRAHLGNARPAIVFDVLFRLMRQV 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + VTYVRN TD+DDKI RA+ +I IT++ TQ ++ D + + PT Sbjct: 61 YGPEHVTYVRNFTDVDDKINARAQAS------GRSIGEITAETTQWYLDDMAAVGVMEPT 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 H PRAT I QMI +I ++I GHAYEA ++F S YG S R +D+ G RV Sbjct: 115 HMPRATEFIDQMIAMIADLIEKGHAYEAEGHVLFAVESYKAYGGLSGRSVDDMIAGARVE 174 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K+NP DF+LWK S P PGWESPWGRGRPGWHIECSAMS LG FDIHGGG DL Sbjct: 175 VAPYKRNPMDFVLWKPSEPELPGWESPWGRGRPGWHIECSAMSYELLGASFDIHGGGNDL 234 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 +FPHHENEIAQSCCA A +W+HN L +EG+KMSKS GNF T+++LLE + G Sbjct: 235 MFPHHENEIAQSCCAHPEGGFAKVWLHNEMLQVEGKKMSKSLGNFFTVHDLLE-GRDGQA 293 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---SKGIIDPAVLSALYN 357 P VIR ML THYR+P+D+T ++ ++AE L KW T + V++AL + Sbjct: 294 GVPGEVIRFVMLSTHYRKPMDWTAEKASQAEATLKKWYAQITEALDNEVPYVGVVNALAD 353 Query: 358 DLNTVSAIQALHK--LARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 DLNT AI +H+ LA ++ L + H GI + ++S +KL Sbjct: 354 DLNTAKAIAEMHQLSLAGDTPSLRASLKLLGFLDH--GIPDWARGPDFDLSELADKLAAV 411 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDN 450 R ++ K FS D ++ L G + K Sbjct: 412 RGAAMESKDFSEVDRMKAALLEAGVEVRMSKAGVE 446 >gi|23501564|ref|NP_697691.1| cysteinyl-tRNA synthetase [Brucella suis 1330] gi|161618646|ref|YP_001592533.1| cysteinyl-tRNA synthetase [Brucella canis ATCC 23365] gi|225627175|ref|ZP_03785213.1| Cysteinyl-tRNA synthetase [Brucella ceti str. Cudo] gi|254701461|ref|ZP_05163289.1| cysteinyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|254704007|ref|ZP_05165835.1| cysteinyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|254709799|ref|ZP_05171610.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|254713802|ref|ZP_05175613.1| cysteinyl-tRNA synthetase [Brucella ceti M644/93/1] gi|254717140|ref|ZP_05178951.1| cysteinyl-tRNA synthetase [Brucella ceti M13/05/1] gi|256031289|ref|ZP_05444903.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|256060801|ref|ZP_05450963.1| cysteinyl-tRNA synthetase [Brucella neotomae 5K33] gi|256159399|ref|ZP_05457181.1| cysteinyl-tRNA synthetase [Brucella ceti M490/95/1] gi|256369113|ref|YP_003106621.1| cysteinyl-tRNA synthetase [Brucella microti CCM 4915] gi|260168427|ref|ZP_05755238.1| cysteinyl-tRNA synthetase [Brucella sp. F5/99] gi|260566743|ref|ZP_05837213.1| cysteinyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|261218954|ref|ZP_05933235.1| cysteinyl-tRNA synthetase [Brucella ceti M13/05/1] gi|261317337|ref|ZP_05956534.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261321547|ref|ZP_05960744.1| cysteinyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261324795|ref|ZP_05963992.1| cysteinyl-tRNA synthetase [Brucella neotomae 5K33] gi|261752004|ref|ZP_05995713.1| cysteinyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261754663|ref|ZP_05998372.1| cysteinyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|261757891|ref|ZP_06001600.1| cysteinyl-tRNA synthetase [Brucella sp. F5/99] gi|265988375|ref|ZP_06100932.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|265997841|ref|ZP_06110398.1| cysteinyl-tRNA synthetase [Brucella ceti M490/95/1] gi|294852039|ref|ZP_06792712.1| cysteinyl-tRNA synthetase [Brucella sp. NVSL 07-0026] gi|38258390|sp|Q8G1N5|SYC_BRUSU RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|189082060|sp|A9MA50|SYC_BRUC2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|23347476|gb|AAN29606.1| cysteinyl-tRNA synthetase [Brucella suis 1330] gi|161335457|gb|ABX61762.1| cysteinyl-tRNA synthetase [Brucella canis ATCC 23365] gi|225618010|gb|EEH15054.1| Cysteinyl-tRNA synthetase [Brucella ceti str. Cudo] gi|255999273|gb|ACU47672.1| cysteinyl-tRNA synthetase [Brucella microti CCM 4915] gi|260156261|gb|EEW91341.1| cysteinyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|260924043|gb|EEX90611.1| cysteinyl-tRNA synthetase [Brucella ceti M13/05/1] gi|261294237|gb|EEX97733.1| cysteinyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261296560|gb|EEY00057.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261300775|gb|EEY04272.1| cysteinyl-tRNA synthetase [Brucella neotomae 5K33] gi|261737875|gb|EEY25871.1| cysteinyl-tRNA synthetase [Brucella sp. F5/99] gi|261741757|gb|EEY29683.1| cysteinyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261744416|gb|EEY32342.1| cysteinyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|262552309|gb|EEZ08299.1| cysteinyl-tRNA synthetase [Brucella ceti M490/95/1] gi|264660572|gb|EEZ30833.1| cysteinyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|294820628|gb|EFG37627.1| cysteinyl-tRNA synthetase [Brucella sp. NVSL 07-0026] Length = 506 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 224/502 (44%), Positives = 294/502 (58%), Gaps = 52/502 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 PQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Q Sbjct: 66 AQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQ 125 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMGT 177 PRAT H+ +M +I ++ G AY A + ++ + P YG+ +RR +DE G Sbjct: 126 PRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMNARKGPRYGALARRSLDEMLAGA 185 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------- 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 186 RVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGG 245 Query: 228 -------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSK Sbjct: 246 LKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSK 305 Query: 281 SNGNFITINELLETKKFGGRSWPAPVI---------RLAMLMTHYREPIDFTVQRLTEAE 331 S GNFITI ++L W + RL+ML THYREPI++T QRL E+ Sbjct: 306 SLGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESA 365 Query: 332 ILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 366 DELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAAL 421 Query: 385 FNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQL 435 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 422 GEGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDEL 480 Query: 436 ESKGFILEDYKNPDNGQRMTRW 457 +G L+D K+P G+R+T W Sbjct: 481 LQEGVQLKDSKDPATGERITTW 502 >gi|312873891|ref|ZP_07733929.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|311090567|gb|EFQ48973.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] Length = 470 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 176/490 (35%), Positives = 254/490 (51%), Gaps = 62/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E N +++ + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKE------NVSVADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS + N W+HNGF+ + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQSEAKTGQK-FVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------ 345 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 346 -------IIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNA 387 ++A+ +D N +A+ +H+L+ D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELSLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILEDT-- 459 Query: 448 PDNGQRMTRW 457 + TRW Sbjct: 460 ----PQGTRW 465 >gi|94310045|ref|YP_583255.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] gi|93353897|gb|ABF07986.1| cysteinyl-tRNA synthetase [Cupriavidus metallidurans CH34] Length = 472 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 194/481 (40%), Positives = 254/481 (52%), Gaps = 45/481 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M + +YN+L RK + P + MYVCGPTVY+FAHIGNARP +VFDVL RLLR Sbjct: 1 MTSALSLYNSLTRKKEPLRTGQPGRVTMYVCGPTVYNFAHIGNARPAVVFDVLARLLREQ 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 Y E V Y RN TD+DDKI A E I IT++ + +D L L P Sbjct: 61 YAE--VVYARNFTDVDDKINASAAAEGVPIG------TITARYIDAYHEDMRALGVLIPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +PR T HIP +I LIQ +I +G+AY + ++F S P YG S R+ ++ G RV Sbjct: 113 LEPRVTEHIPAIIALIQRLIANGNAYVEQDHVLFHVPSFPAYGQLSGRRPEDMLAGVRVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK ST PGW SPWGRGRPGWHIECSAM +LG DIHGGG DL Sbjct: 173 VAPYKRDPLDFVLWKPSTAEVPGWPSPWGRGRPGWHIECSAMIGQHLGSTIDIHGGGQDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 IFPHHENEIAQ CA+ E W+HN F+ ++G+KMSKS GN + + +LL Sbjct: 233 IFPHHENEIAQGTCANG-ELYCRTWVHNSFVTVDGQKMSKSLGNVLLLRDLLG------- 284 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS--------TSKGIIDPAVL 352 P IRLA+L HYR P+D+ QRL A L ++ + + D V+ Sbjct: 285 QAPGEAIRLALLSAHYRHPLDWNAQRLLTARQTLLRFYRGLKMAEHIEISPGEEPDEEVI 344 Query: 353 SALYNDLNTVSAIQALHKLARESTKNHD------LLPIFNASAHILGIEVCKEH------ 400 +AL NDLN A+ LH L E K AS +LG+ + Sbjct: 345 AALNNDLNIPGALARLHVLLAELEKAGADASRSVAKARMMASGRLLGLFQQDPNSALRGL 404 Query: 401 ---------LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNG 451 + I+ LV ER K + F+ AD +R++L + G ++ D N Sbjct: 405 AGAAVTHGIATTADAARIDHLVAEREQARKRRDFARADALREELGAAGVLVHDTPNGSTW 464 Query: 452 Q 452 Sbjct: 465 T 465 >gi|325918144|ref|ZP_08180296.1| cysteinyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] gi|325535619|gb|EGD07463.1| cysteinyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] Length = 476 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 194/496 (39%), Positives = 263/496 (53%), Gaps = 58/496 (11%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M ++++N L R++ F +DPS +YVCGPTVY++AHIGNAR +VFDVL LLR Sbjct: 1 MPMSLRLHNNLTRRVEPFAPLDPSCPTLYVCGPTVYNYAHIGNARGPVVFDVLAALLRRR 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 YG + Y RNITD+DDKI A+ + I S IT + + +D L + P Sbjct: 61 YG--ALRYARNITDVDDKINAAAQAQGVPI------STITHRFAAIYRQDMAALGVVPPD 112 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P AT HIPQ++ +I+ +I +GHAY A ++F +S YG SRR DE G RV Sbjct: 113 IEPEATAHIPQIVAMIEQLIANGHAYAAEGHVLFAVASFDGYGKLSRRDPDEMLAGARVD 172 Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240 +K++P DF+LWK ST PGWESPW RGRPGWHIECSAM++ +LG DIH GG+DL Sbjct: 173 VAPYKRDPGDFVLWKPSTDDLPGWESPWSRGRPGWHIECSAMAAAHLGPTIDIHAGGVDL 232 Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300 FPHHENEIAQS CA A W+HNG LN G KMSKS GN T+++L+ Sbjct: 233 QFPHHENEIAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNIETVHDLIAKH----- 287 Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID------------ 348 P +RLA++ HYR+P+D++ + +A+ L + T +D Sbjct: 288 --PPEALRLALVSAHYRQPLDWSDGLIEQAKNTLDRLYGTLRDVAALDAGDAPDGSASPA 345 Query: 349 --PAVLSALYNDLNTVSAIQALHKLARESTKNHDL----LPIFNASAHILGIE------- 395 V +AL +DLNT A+ + +A E+ + I A + I+ Sbjct: 346 IPAEVEAALDDDLNTPQALSIIASIAAEARALRNQVTHGADISARRAELREIKTRLLGAG 405 Query: 396 ------------VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443 N I LV+ER K K F+ AD IRKQL +G +LE Sbjct: 406 LALGLLQQDPAAWFARGTNAGDDARITALVEERSTAKKAKDFARADAIRKQLADEGIVLE 465 Query: 444 DYKNPDNGQRMTRWKQ 459 D + RWK+ Sbjct: 466 DT------PQGVRWKR 475 >gi|307067211|ref|YP_003876177.1| cysteinyl-tRNA synthetase [Streptococcus pneumoniae AP200] gi|306408748|gb|ADM84175.1| Cysteinyl-tRNA synthetase [Streptococcus pneumoniae AP200] Length = 440 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 168/462 (36%), Positives = 236/462 (51%), Gaps = 39/462 (8%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 + R + EF I+ I+MYVCGPTVY++ H+GNAR + FD + R Y + V Y+ Sbjct: 1 MSRDLREFVPIEDGKIKMYVCGPTVYNYIHVGNARSTVAFDTIRRYFEYRGYK--VAYIS 58 Query: 71 NITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIP 130 N TD+DDKII RAR+E + K F +D T L T PR + Sbjct: 59 NFTDVDDKIINRAREE------GITPQEVADKYIAAFREDVTALGVKPATRHPRVVEFMA 112 Query: 131 QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---VPEKYHKKN 187 +I ++++I G AYE+ ++ F NY + + +++ +G E K+N Sbjct: 113 DIIRFVEDLIEKGFAYESQGDVYFRVEKSHNYAKLANKTLEDLDLGASGRTDEETARKEN 172 Query: 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 P DF LWK S P E W+SPWG GRPGWHIECS MS+ LG DIHGGG DL FPHH N Sbjct: 173 PVDFALWKSSKPGEISWDSPWGPGRPGWHIECSVMSTEILGDTIDIHGGGADLEFPHHTN 232 Query: 248 EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVI 307 EIAQS + AN W+HNGF+N++ KMSKS GNFIT+++ L+T V+ Sbjct: 233 EIAQSEAKTG-KAFANYWMHNGFVNIDNVKMSKSLGNFITVHDALKT-------LDGQVL 284 Query: 308 RLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSK--GIIDPA--------VLSALYN 357 R HYR+PI+FT + + +AE L T G +D ++A+ Sbjct: 285 RFFFATQHYRKPINFTEKAVRDAETNLKYLKNTYEQPFTGNVDAQELQNFKDKFVAAMDE 344 Query: 358 DLNTVSAIQALHKLARESTK---NHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQ 414 D N + I + ++ + + + I GI +E L+ IE L+Q Sbjct: 345 DFNAANGITVVFEMTKWINSGNYDASVKQALADMLEIFGIVFVEEVLD----AEIEDLIQ 400 Query: 415 ERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTR 456 +R + F +AD IR QL ++G L D K+ G R TR Sbjct: 401 KRQEARANRDFETADQIRDQLAAQGIKLLDTKD---GVRWTR 439 >gi|157825244|ref|YP_001492964.1| cysteinyl-tRNA synthetase [Rickettsia akari str. Hartford] gi|187630857|sp|A8GM31|SYC_RICAH RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|157799202|gb|ABV74456.1| cysteinyl-tRNA synthetase [Rickettsia akari str. Hartford] Length = 459 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 192/476 (40%), Positives = 275/476 (57%), Gaps = 33/476 (6%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ +YNTL R F D +NI+MYVCGPTVYD HIGN+R ++V+D+LYR++ Sbjct: 1 MQIQLHLYNTLSRTKEVFNPQDQANIKMYVCGPTVYDNPHIGNSRSVVVYDLLYRIVIKI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120 +G + V YVRNITD+DDKII+RA + I+ +T K TQ+F + L C+ P Sbjct: 61 FGSRAVKYVRNITDVDDKIIDRAEL------LGITINELTDKVTQEFHTNMAYLGCMLPN 114 Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180 +P+AT HI MI +I+ +I HAY +N + FD S PNY S R ++E G R+ Sbjct: 115 IEPKATEHIDVMIEIIERLIAKDHAYITDNHVYFDVLSAPNYTELSNRNLEEMFEGVRIE 174 Query: 181 EKYHKKNPADFILWKRSTPME---PGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 + K +P DF+LWK + P E +ESPWG GRPGWHIECSAMS YLG+ FDIHGGG Sbjct: 175 KSKTKNHPQDFVLWKPAKPNESTNMNFESPWGFGRPGWHIECSAMSYKYLGENFDIHGGG 234 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 DL+FPHH NEIAQS CA A W+HNGFL + G KMSKS GNFIT+ +L++ Sbjct: 235 ADLVFPHHTNEIAQSRCAFPDSTYAKYWVHNGFLTVNGEKMSKSLGNFITVRDLMD---- 290 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG----IIDPAVLS 353 + V+RL +L +HYR P+D+ + + +A+ L W + + + + Sbjct: 291 --KDISGEVVRLFLLSSHYRRPLDYNDKAIEDAKKTLDYWYRAIENINVQKIDLPHNFMQ 348 Query: 354 ALYNDLNTVSAIQALHKLAR-----ESTKNHDL-LPIFNASAHILGI--EVCKEHLNKNI 405 +L +D+NT A++ ++ A+ ++ K L + A+ +G+ + E N + Sbjct: 349 SLLDDMNTPLAVKIINDYAKGVFIAKTEKERQLNASVIITCANFIGLMNQTPHEWFNSGV 408 Query: 406 SIA-IEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460 I +LV +RL K K + AD IR QL ILED + T W+++ Sbjct: 409 DSLYINELVNKRLEAKKQKNWLLADQIRNQLLEGKIILEDKSDGT-----TIWRKE 459 >gi|239995443|ref|ZP_04715967.1| cysteinyl-tRNA synthetase [Alteromonas macleodii ATCC 27126] Length = 460 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 167/480 (34%), Positives = 255/480 (53%), Gaps = 47/480 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 + +YNT R+ +F + + +YVCG TVYD +H+G+AR + FDVL R +R+ + Sbjct: 2 LHLYNTRTREKAKFVPLQEGKVGLYVCGITVYDLSHMGHARTYLSFDVLVRYMRHLGLD- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YVRNITDIDDKII RA + ++ +T++ +D + L P +P Sbjct: 61 -VKYVRNITDIDDKIIARANEN------GESFEALTARTIAMMHEDFAAINLLEPDVEPT 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 + H+ ++I +IQ ++ G+AY+A + +++FD S +YG S++ +D+ K G RV Sbjct: 114 VSGHMDEIIAIIQRLMDKGYAYQAKSGDVLFDVSKYEDYGKLSKQDLDQLKAGARVEVAA 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K +P DF+LWK + P EP W+SPWG GRPGWHIECSAM+ +LG FDIHGGG DL FP Sbjct: 174 GKDDPLDFVLWKTTKPGEPAWQSPWGEGRPGWHIECSAMNHKHLGAHFDIHGGGSDLTFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENE+AQSCCA N+W+H G + + KMSKS GNF T+ ++L + Sbjct: 234 HHENEVAQSCCAYDT-PYVNVWMHAGMVQVNDEKMSKSLGNFFTLRDVL-------KEHD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIID----------PAVLS 353 + +R ++ HYR + ++ +T+A+ L + + + + Sbjct: 286 SETLRFFLMSAHYRSQLSYSQDNITQAKAALERLYTALRGVEVDESTDLSYGGYLKRFEA 345 Query: 354 ALYNDLNTVSAIQALHKLARESTKNHD-------LLPIFNASAHILGIEVCKEHL----- 401 A+ +DLN A L +ARE + D L + ILG+ Sbjct: 346 AMNDDLNVPEAFSVLFDVARELNRQKDNADEAGKLAAVLKGLGAILGMLQSDPDTFLKGG 405 Query: 402 --NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 N + + IE L+++R K +++AD R L +KG +LED G T W++ Sbjct: 406 EGNDDEAAEIEALIKQRNDARASKDWAAADAARDALNAKGVVLED------GPSGTTWRK 459 >gi|229159263|ref|ZP_04287287.1| Cysteinyl-tRNA synthetase [Bacillus cereus R309803] gi|228624155|gb|EEK80957.1| Cysteinyl-tRNA synthetase [Bacillus cereus R309803] Length = 440 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 165/464 (35%), Positives = 238/464 (51%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANE-- 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + + I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 57 ----LGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGKGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWPQT---------------------STSKGIIDPAVLSALYNDLNTVSAIQ 366 L + A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEMEKFQAAFEEAMDDDFNTANAIT 344 Query: 367 ALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + + ILG+E+ +E L + IE L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSKIVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILEDT------AQGTRWKR 439 >gi|256844496|ref|ZP_05549982.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] gi|293381071|ref|ZP_06627092.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 214-1] gi|312977950|ref|ZP_07789696.1| cysteine--tRNA ligase [Lactobacillus crispatus CTV-05] gi|256613574|gb|EEU18777.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] gi|290922371|gb|EFD99352.1| cysteinyl-tRNA synthetase [Lactobacillus crispatus 214-1] gi|310895257|gb|EFQ44325.1| cysteine--tRNA ligase [Lactobacillus crispatus CTV-05] Length = 477 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 166/495 (33%), Positives = 251/495 (50%), Gaps = 62/495 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +++YNTL RK EF+ + P +I MYVCGPTVY++ HIGNAR I FD + R Y + Sbjct: 4 VRVYNTLTRKKEEFKPLVPGHISMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYKGYD- 62 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV N TD+DDK+I AR E ++P + F+ DTT L T PR Sbjct: 63 -VKYVSNFTDVDDKMINEARAEKTTVPK------LAENFINAFLADTTALNIEPATLHPR 115 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRV----P 180 AT+ I +I ++++I +G+AYE + ++ + +YG S + I++ + G Sbjct: 116 ATHEINDIITFVKSLIDNGYAYEVDGDVYYRAKKFKHYGQLSDQNIEQLEEGASEHINDT 175 Query: 181 EKYHKKNPADFILWKRST-PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++P DF LWK P E W+SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 176 EQSRKEDPIDFALWKAQKEPDEIAWDSPWGKGRPGWHIECSVMSTKYLGDTIDIHGGGQD 235 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKF 297 L FPHHENEIAQS +K N W+HNGF+ + + KMSKS NF+T++++L Sbjct: 236 LEFPHHENEIAQSEAKTG-KKFVNYWLHNGFVTVGKDQEKMSKSLHNFVTVHDIL----- 289 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------ 345 R V+R M YR I+++ + L +A +L ++ T T+ Sbjct: 290 --REVDPQVLRFFMASVQYRRQINYSAENLAQAATILDRFKNTLTNINYRLEDDTASEES 347 Query: 346 --------IIDPAVLSALYNDLNTVSAIQALHKLA-----------RESTKNHDLLPIFN 386 + A+ +D N +A+ A++ L + + Sbjct: 348 AELAQAIMATNEKFEQAMDDDFNVQNALTAIYDLLPVVNANANAARADKQELQKFKEKLA 407 Query: 387 ASAHILGIEVCKE--HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + + G++ K + I+ LV++R K ++++D IR QL+ G ++D Sbjct: 408 SWLLVFGVDTNKLCVKNAGSNDDEIDALVKKRDEARANKDWATSDQIRDQLKEMGITIQD 467 Query: 445 YKNPDNGQRMTRWKQ 459 + TRW + Sbjct: 468 T------PQGTRWTR 476 >gi|53711487|ref|YP_097479.1| cysteinyl-tRNA synthetase [Bacteroides fragilis YCH46] gi|61216162|sp|Q64ZY1|SYC_BACFR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|52214352|dbj|BAD46945.1| cysteinyl-tRNA synthetase [Bacteroides fragilis YCH46] Length = 491 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 171/491 (34%), Positives = 248/491 (50%), Gaps = 42/491 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTRL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIP----INDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ + E + ++ K L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLEPMEVVQYYLNRYHKAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQ 173 L P+ +P A+ HI + I L++ I+ G+AYE+ + FD + +YG S R +D+ Sbjct: 119 LPPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDHHYGKLSGRNLDDV 178 Query: 174 KMGTRV-PEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 TR + K NPADF LWKR+ P W SPWG G PGWH EC+AM YLG+ F Sbjct: 179 LNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGRKYLGEHF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNFIT++E Sbjct: 239 DIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNFITLDEF 297 Query: 292 L-ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 + K +++ IR +L HYR P+DF+ + L AE LS+ + S I PA Sbjct: 298 FSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGLSRLMEAVDSLEKITPA 357 Query: 351 -------------VLSALYNDLNTVSAIQALHKLAREST------------KNHDLLPIF 385 A+ +DLNT I L A+ DL +F Sbjct: 358 ATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDLKDLKEVF 417 Query: 386 NAS-AHILGIEVC---KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + ILG++ + ++ L+++R+ K ++++D IR +L + GF Sbjct: 418 HTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNELTALGFE 477 Query: 442 LEDYKNPDNGQ 452 ++D K+ + Sbjct: 478 IKDTKDGFEWK 488 >gi|255548846|ref|XP_002515479.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223545423|gb|EEF46928.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] Length = 563 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 173/503 (34%), Positives = 257/503 (51%), Gaps = 68/503 (13%) Query: 2 KKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYY 61 ++ +YNT+ R F+ + MYVCG T YD +HIG+AR + FDVLYR L++ Sbjct: 68 STELYLYNTMSRNKDLFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLG 127 Query: 62 GEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTH 121 + C YVRN TD+DDKII RA + + + ++ + ++F D L CL P+ Sbjct: 128 YDVC--YVRNFTDVDDKIIARANE------LGEDPISLSRRYCEEFHNDMVYLHCLPPSI 179 Query: 122 QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 +P ++H+PQ+I +I+ I+ +G AY + ++ F P YG S RK+++ + G RV Sbjct: 180 EPCVSDHMPQIINMIKQILDNGCAYRIDGDVYFSIDGYPEYGKLSGRKLEDNRAGERVAV 239 Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 KKNPADF LWK + EP WESPWG GRPGWHIECSAMS+ YLG FDIHGGG+DL+ Sbjct: 240 DSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 299 Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301 FPHHENEIAQSC A R + W+HNGF+ + KMSKS GNF TI ++++ Sbjct: 300 FPHHENEIAQSCAACRGSNIS-YWVHNGFVTINSEKMSKSLGNFFTIRQVIDL------- 351 Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ---------------------- 339 + +R +L THYR P++++ +L A + Q Sbjct: 352 YHPLALRFFLLGTHYRSPVNYSDVQLESASERIFYIYQTLHDCETVISQHETAFEKDSVP 411 Query: 340 --TSTSKGIIDPAVLSALYNDLNTVSAIQALHKLAREST----------KNHDLLPIFNA 387 T ++++ +DL+T + AL + L I Sbjct: 412 SDTLDGINKFSDVFVTSMSDDLHTPVLLAALSDPLKIINDMLHTRKRIQSLAALEKIVRD 471 Query: 388 SAHILGI------EVCKEHLNKNI------SIAIEKLVQERLILLKMKKFSSADYIRKQL 435 + +LG+ EV ++ K + + + ++ER + K + + +D IRK L Sbjct: 472 ALSVLGLMPTTYSEVLQQLREKALRRAKLTEEQVLQRIEERTVARKNRDYERSDAIRKDL 531 Query: 436 ESKGFILEDYKNPDNGQRMTRWK 458 + G L D + T W+ Sbjct: 532 ATHGIALMDSPD------GTSWR 548 >gi|309809236|ref|ZP_07703106.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|312871506|ref|ZP_07731599.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|312872554|ref|ZP_07732622.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|329920498|ref|ZP_08277230.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 1401G] gi|308170470|gb|EFO72493.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|311091916|gb|EFQ50292.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|311092901|gb|EFQ51252.1| cysteine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|328936174|gb|EGG32627.1| cysteine--tRNA ligase [Lactobacillus iners SPIN 1401G] Length = 470 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 176/490 (35%), Positives = 253/490 (51%), Gaps = 62/490 (12%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL K EF+ + MYVCGPTVY++ HIGNAR +I FD + R L Y E Sbjct: 1 MKIFNTLSNKKEEFKPQIAGKVNMYVCGPTVYNYIHIGNARSVIAFDTIRRYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V Y+ N TD+DDK+I +AR+E N +++ + + + FV DTT L T PR Sbjct: 60 -VKYISNFTDVDDKMINQARKE------NVSVADLADRYIKAFVADTTALNIKPATFNPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR----VP 180 AT I +I I+ +I G+AY +N++ F YG S + IDE + G V Sbjct: 113 ATEEITDIISFIKVLIAKGYAYVVDNDVYFRAKKFTKYGCLSGQNIDELEEGASQHISVE 172 Query: 181 EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 E+ K++ DF LWK E W SPWG+GRPGWHIECS MS+ YLG DIHGGG D Sbjct: 173 EQKKKEDAIDFALWKGQKTLDEIAWNSPWGKGRPGWHIECSVMSTKYLGNTIDIHGGGQD 232 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE--GRKMSKSNGNFITINELLETKKF 297 L FPHHENE+AQS + N W+HNGF+ + KMSKS NFIT+++LL Sbjct: 233 LQFPHHENELAQSEAKTGQK-FVNYWLHNGFVTVGEKQEKMSKSLNNFITVHDLL----- 286 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG------------ 345 + V+R M YR+PI++T L +AE +L ++ + Sbjct: 287 --KKVDPQVLRFYMSSVQYRKPINYTEDGLRQAETVLKRYKNILRNIEERLSEKNDATDS 344 Query: 346 -------IIDPAVLSALYNDLNTVSAIQALHKLAREST-----------KNHDLLPIFNA 387 ++A+ +D N +A+ +H+L D + + + Sbjct: 345 DLAERLIDAKKKFIAAMDDDFNVQNALSVMHELTLHVNVHLNNDFIDHKNLQDFVQLMDE 404 Query: 388 SAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKN 447 I G+++ E N + I+KLV +R + + K ++++D IR +L +KG ILED Sbjct: 405 WLLIFGVKITTEMENDD---TIQKLVDQRNLARQNKDWATSDQIRDELLAKGIILEDT-- 459 Query: 448 PDNGQRMTRW 457 + TRW Sbjct: 460 ----PQGTRW 465 >gi|299067219|emb|CBJ38416.1| cysteine tRNA synthetase (Cysteine--tRNA ligase) [Ralstonia solanacearum CMR15] Length = 465 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 177/484 (36%), Positives = 256/484 (52%), Gaps = 48/484 (9%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 + +KIYNTL R+ F I+P +RMYVCG TVYD+ H+G+AR M+VFD++ R LR Sbjct: 2 ESLKIYNTLAREKQTFVPIEPGRVRMYVCGMTVYDYCHVGHARVMVVFDMVQRWLRASGY 61 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTYVRNITDIDDKII+RA + + I +T++ +D L P + Sbjct: 62 D--VTYVRNITDIDDKIIKRA------VENGETIGTLTNRFIAAMHEDADALGVQRPDRE 113 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE 181 PRAT ++PQM+ +I + +G AY+A + ++ + P YG S + +++ + G RV Sbjct: 114 PRATEYVPQMLSMIGKLQHNGLAYQAADGDVNYAVRKFPGYGKLSGKSLEDLRAGERVAA 173 Query: 182 KYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 K++P DF+LWK + EP W SPWG GRPGWHIECSAMS LG FD+HGGG Sbjct: 174 NDAKQDPLDFVLWKSAKADEPAESRWASPWGEGRPGWHIECSAMSCELLGAHFDLHGGGA 233 Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298 DL FPHHENEIAQS A+ N W+HNGF+ + KMSKS GNF TI ++L Sbjct: 234 DLQFPHHENEIAQSEGANG-STFVNTWMHNGFVRVNDEKMSKSLGNFFTIRDVL------ 286 Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA-------- 350 + + V+R +L +HYR ++++ L +A L++ A Sbjct: 287 -KVYDPEVVRFFILRSHYRSDLNYSDAHLDDARHALTRLYTALKDVPAEAQARPDWNEPH 345 Query: 351 ---VLSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGIEVCKEH----- 400 A+++D NT A+ L +LA E K L A ++G+ V H Sbjct: 346 GKRFREAMHDDFNTPVAMAVLFELATEINKTRSPALASQLAALGGVMGLLVRDPHAFLQG 405 Query: 401 -----LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 + + +E ++ R + F+ AD IR L + G +LED +T Sbjct: 406 GVGAAADGLDTAEVETRIEARRAAKAARDFARADGIRADLLAAGIVLEDKPGG-----VT 460 Query: 456 RWKQ 459 W++ Sbjct: 461 EWRR 464 >gi|237726044|ref|ZP_04556525.1| cysteinyl-tRNA synthetase [Bacteroides sp. D4] gi|229435852|gb|EEO45929.1| cysteinyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4] Length = 493 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 164/493 (33%), Positives = 246/493 (49%), Gaps = 44/493 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ K+ IYNTL R+ F + ++ MYVCGPTVY AH+G+ARP I FD+L+R L + Sbjct: 1 MENKLTIYNTLSRQKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDILFRYLTHL 60 Query: 61 YGEKCVTYVRNITDID----DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ D + + + ++ K L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADDGEDKIAKKARLEQLEPMEVVQYYMNRYHKAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQ 173 L P+ +P A+ HI + I L++ I+ +G+AYE+ + FD + +YG S R +D+ Sbjct: 119 LPPSIEPHASGHIIEQIELVEEILKNGYAYESEGSVYFDVAKYNKDHHYGKLSGRNLDDV 178 Query: 174 KMGTRV-PEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 TR + K+NPADF LWK + P W SPW G PGWH EC+AM YLG+ F Sbjct: 179 LNTTRELDGQSEKRNPADFALWKCAQPEHIMRWPSPWSNGFPGWHCECTAMGKKYLGEHF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G+KM KS GNFI ++E Sbjct: 239 DIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGQKMGKSYGNFINLSEF 297 Query: 292 LE-TKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP- 349 E + K +++ IR +L HYR +DF+ + L AE L + + I P Sbjct: 298 FEGSHKLLTQAYSPMTIRFFILQAHYRSTVDFSNEALQAAEKGLERLTEAVKGLERITPT 357 Query: 350 --------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNA-------- 387 +A+ +DLN+ I L AR D +A Sbjct: 358 AQTTGVEGVKDLREKCYTAMNDDLNSPIVIAHLFDGARMINTVLDKKATLSAEDLEELKS 417 Query: 388 -----SAHILGIE---VCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKG 439 ILG++ E + ++ L+++R+ K ++++D IR +L + G Sbjct: 418 VFHLFMYEILGLKEETANNEAREEAYGKVVDMLLEQRMKAKANKDWATSDKIRDELAALG 477 Query: 440 FILEDYKNPDNGQ 452 F ++D K+ + Sbjct: 478 FEVKDTKDGFTWR 490 >gi|60679757|ref|YP_209901.1| cysteinyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] gi|81317170|sp|Q5LIT7|SYC_BACFN RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|60491191|emb|CAH05939.1| putative cysteinyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] Length = 491 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 171/491 (34%), Positives = 247/491 (50%), Gaps = 42/491 (8%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M+ ++ IYNTL+RK F + ++ MYVCGPTVY AH+G+ARP I FDVL+R L Sbjct: 1 MEHQLTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTRL 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIP----INDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ + E + ++ K L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADEGEDKIAKKARLEQLEPMEVVQYYLNRYHKAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPN---YGSFSRRKIDEQ 173 L P+ +P A+ HI + I L++ I+ G+AYE+ + FD + YG S R +D+ Sbjct: 119 LPPSIEPHASGHIIEQIELVKKILDAGYAYESQGSVYFDVAKYNKDYHYGKLSGRNLDDV 178 Query: 174 KMGTRV-PEKYHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 TR + K NPADF LWKR+ P W SPWG G PGWH EC+AM YLG+ F Sbjct: 179 LNTTRELDGQEEKHNPADFALWKRAQPEHIMRWPSPWGDGFPGWHAECTAMGRKYLGEHF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQS A + + + W+HN + + G KM KS GNFIT++E Sbjct: 239 DIHGGGMDLIFPHHECEIAQS-VASQGDDMVHYWMHNNMITINGTKMGKSLGNFITLDEF 297 Query: 292 L-ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPA 350 + K +++ IR +L HYR P+DF+ + L AE LS+ + S I PA Sbjct: 298 FSGSHKLLTQAYSPMTIRFFILQAHYRSPVDFSNEALQAAEKGLSRLMEAVDSLEKITPA 357 Query: 351 -------------VLSALYNDLNTVSAIQALHKLAREST------------KNHDLLPIF 385 A+ +DLNT I L A+ DL +F Sbjct: 358 ATSNVDVKSLRTKCFEAMNDDLNTPIVISHLFDGAKMINNIIAGNNTISADDLKDLKEVF 417 Query: 386 NAS-AHILGIEVC---KEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFI 441 + ILG++ + ++ L+++R+ K ++++D IR +L + GF Sbjct: 418 HTFCFDILGLKEEIGSSDGREAAYGKVVDMLLEQRVKAKANKDWATSDLIRNELTALGFE 477 Query: 442 LEDYKNPDNGQ 452 ++D K+ + Sbjct: 478 IKDTKDGFEWK 488 >gi|228912829|ref|ZP_04076476.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228943896|ref|ZP_04106281.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815729|gb|EEM61965.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228846765|gb|EEM91770.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 440 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 165/464 (35%), Positives = 238/464 (51%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANE-- 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + + I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 57 ----LGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWPQT---------------------STSKGIIDPAVLSALYNDLNTVSAIQ 366 L + A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLADLEKFQTAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + + ILG+E+ +E L + IE L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSTVVIEAYVKQLETLFDILGLELAQEEL---LDEEIEALIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKDRNIILEDT------AQGTRWKR 439 >gi|291166310|gb|EFE28356.1| cysteine--tRNA ligase [Filifactor alocis ATCC 35896] Length = 466 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 176/487 (36%), Positives = 254/487 (52%), Gaps = 55/487 (11%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++ YNTL R+ EF I+ + ++MY CGPTVY++ HIGNARP I+FD L L Y E Sbjct: 1 MRFYNTLTRRKDEFVPIEKNKVKMYSCGPTVYNYFHIGNARPFIIFDTLRNYLEYRGYE- 59 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 VT+V+N TD+DDKII RA +E + + K +++ D L + PR Sbjct: 60 -VTFVQNFTDVDDKIINRANEE------GISPLEVADKYIKEYFVDADGLGIRRASVHPR 112 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 T I +I I+ +I GHAYE + ++ +DT S YG SR+ ++E G R+ Sbjct: 113 VTECIEDIIEFIEELIQKGHAYEIDGDVYYDTKSFDGYGKLSRQNMEELNAGARIDVDDR 172 Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 KK+P+DF LWK+ E GW SPWG GRPGWHIECS MS YLG DIH GG DLIFPH Sbjct: 173 KKSPSDFALWKKKKEGEIGWISPWGEGRPGWHIECSVMSRKYLGDTIDIHSGGQDLIFPH 232 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 HENEIAQS E A+ W+HNG++N+ +KMSKS NF T+ E+ E Sbjct: 233 HENEIAQSEGRSGKE-FAHYWLHNGYININNQKMSKSLNNFFTVREISEVIDL------- 284 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT--------STSKGIIDPA------ 350 ++R +L YR P++F+ L A+ + + T ++G+I Sbjct: 285 EIVRFFLLSAQYRNPVNFSQDLLDAAKSGMERLYNTKHKVEFLLEQAQGMIKEDEKEFVS 344 Query: 351 --------VLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHIL 392 + A+ +DLNT I A+ +L++ + + IF ++L Sbjct: 345 KLPSYRELFIEAMDDDLNTADGISAIFELSKFINTTVSEKSSKEYLQECMNIFCELTNVL 404 Query: 393 GIEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452 I + K+ + I +L+++R + K K F+ AD IR QL G + D + Sbjct: 405 NI-IQKKKSDGFDEDKINELIEQRSLAKKEKNFAEADRIRGQLHDMGVEVLDTR------ 457 Query: 453 RMTRWKQ 459 + T WK+ Sbjct: 458 QGTTWKK 464 >gi|228950638|ref|ZP_04112772.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808989|gb|EEM55474.1| Cysteinyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 440 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 166/464 (35%), Positives = 239/464 (51%), Gaps = 57/464 (12%) Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEH 87 MYVCGPTVY++ HIGNARP +VFD + R L Y + V YV N TD+DDK+I+ A + Sbjct: 1 MYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGYD--VQYVSNFTDVDDKLIKAANE-- 56 Query: 88 PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYE 147 + + + I + + + +D T L C T PR T ++ +I IQ ++ G+AYE Sbjct: 57 ----LGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMDIIIEFIQELVNKGYAYE 112 Query: 148 ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP 207 + ++ F T YG S + I + + G R+ K++P DF LWK + E WESP Sbjct: 113 SEGDVYFKTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLDFALWKAAKEGEIFWESP 172 Query: 208 WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIH 267 WG+GRPGWHIECSAM+ YLG DIH GG DL FPHHENEIAQS + A W+H Sbjct: 173 WGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIAQSEALTG-KTFARYWMH 231 Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRL 327 NG++N+ KMSKS GNFI +++++ + + +IR ML HYR PI+F+ + L Sbjct: 232 NGYININNEKMSKSLGNFILVHDII-------KQYDPQLIRFFMLSVHYRHPINFSEELL 284 Query: 328 TEAEILLSKWPQT---------------------STSKGIIDPAVLSALYNDLNTVSAIQ 366 L + A A+ +D NT +AI Sbjct: 285 QSTNNGLERIKTAYGNLKHRMESSTDLTDHNEKWLAEIEKFQTAFEEAMNDDFNTANAIT 344 Query: 367 ALHKLARESTKN-----------HDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQE 415 L+ +A + + + ILG+E+ KE L + IE+L+Q+ Sbjct: 345 ELYNVANHANQYLLEEHTSKVVIEAYVKQLETLFDILGLELSKEEL---LDKEIEELIQK 401 Query: 416 RLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQ 459 R+ K + F+ +D IR L+ + ILED + TRWK+ Sbjct: 402 RIEARKNRDFALSDQIRDDLKERNIILEDT------AQGTRWKR 439 >gi|332881450|ref|ZP_08449099.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680448|gb|EGJ53396.1| cysteine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 494 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 163/494 (32%), Positives = 246/494 (49%), Gaps = 45/494 (9%) Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60 M++K+ IYNTL RK EF+ + P + MYVCGPTVY AH+G+ARP I FD+L+R L++ Sbjct: 1 MEQKLFIYNTLSRKKEEFKPVTPGRVGMYVCGPTVYGDAHLGHARPAITFDLLFRYLQHI 60 Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIP----INDAISIITSKNTQQFVKDTTRLAC 116 + V YVRNITD+ + E + T +F L Sbjct: 61 GYK--VRYVRNITDVGHLEHDADEGEDKIAKKARLEELEPMEVAQYYTNRFHAAMEALNV 118 Query: 117 LAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNYGSFSRRKIDEQ 173 L P+ +P AT HI + I L++ I+ +G+AY + + FD +YG S R +++ Sbjct: 119 LPPSIEPHATGHIIEQIELVKEILDNGYAYVSEGSVYFDVEKYNKAHHYGKLSGRNLEDV 178 Query: 174 KMGTRVPEK-YHKKNPADFILWKRSTPME-PGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 +R + K N DF LWK + P W SPW G PGWH EC+AM YLG F Sbjct: 179 INNSRALDGVGEKHNQVDFALWKCAQPQHIMRWPSPWSNGFPGWHCECTAMGRKYLGDHF 238 Query: 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINEL 291 DIHGGG+DLIFPHHE EIAQ+ A + N W+HN + + G+KM KS GNFIT+ + Sbjct: 239 DIHGGGMDLIFPHHECEIAQA-VASQGSDMVNYWMHNNMITINGQKMGKSLGNFITLAQF 297 Query: 292 L-ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ--------TST 342 + +++ IR +L HYR +DF+ + L +E L++ + T T Sbjct: 298 FSGEHESLTQAYSPMTIRFFILQAHYRSTVDFSNEALQASEKGLARLMEGIANLKRITPT 357 Query: 343 SKGIIDPA--------VLSALYNDLNTVSAIQALHKLAR--------ESTKNHDLLPIFN 386 + G ++ A A+ +DLN+ I L R ++T D+L Sbjct: 358 AGGSVEMAYVDELRRKCYEAMNDDLNSPIVISHLFDACRVINTVVDQKATMAGDVLAALT 417 Query: 387 ASAHILGIEV--CKEHL------NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESK 438 H ++ KE + ++ L+++R+I K ++++D IR L + Sbjct: 418 EVFHTFAFDILGLKEETGGGSGREEAFGKVVDMLLEQRMIAKANKDWATSDKIRDNLAAL 477 Query: 439 GFILEDYKNPDNGQ 452 GF ++D K+ + Sbjct: 478 GFEVKDTKDGFTWK 491 >gi|148560736|ref|YP_001258660.1| cysteinyl-tRNA synthetase [Brucella ovis ATCC 25840] gi|187629796|sp|A5VPL3|SYC_BRUO2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|148371993|gb|ABQ61972.1| cysteinyl-tRNA synthetase [Brucella ovis ATCC 25840] Length = 506 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 224/502 (44%), Positives = 293/502 (58%), Gaps = 52/502 (10%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 ++++YNTL R F ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG Sbjct: 6 PQLRLYNTLTRTKEAFAPIDAKNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 65 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 + VTY RNITD+DDKI RA +++P +P N+AI +T QF D T L L PT Q Sbjct: 66 AQHVTYARNITDVDDKINARAARDYPDLPFNEAIRKVTESTNAQFQADVTALGNLQPTVQ 125 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEII-----FDTSSIPNYGSFSRRKIDEQKMGT 177 PRAT H+ +M +I ++ G AY A + ++ D P YG+ +RR +DE G Sbjct: 126 PRATEHMDEMRAMIDRLVQRGVAYVAQDHVLFSPSAMDARKGPRYGALARRSLDEMLAGA 185 Query: 178 RVPEKYHKKNPADFILWKRSTPMEPGWESPWG---RGRPGWHIECSAMSSHYL------- 227 RV +K++ DF+LWK S EPGW SP G GRPGWHIECSAMS L Sbjct: 186 RVDVASYKRDEMDFVLWKPSKKGEPGWPSPAGIETLGRPGWHIECSAMSMAKLLEPFGGG 245 Query: 228 -------GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 FDIHGGG+DL+FPHHENEIAQSCCA E+ ANIW+HNGFL +EG+KMSK Sbjct: 246 LKCDDPERNQFDIHGGGIDLVFPHHENEIAQSCCALGTERMANIWMHNGFLQVEGQKMSK 305 Query: 281 SNGNFITINELLETKKFGGRSWPAPVI---------RLAMLMTHYREPIDFTVQRLTEAE 331 S GNFITI ++L W + RL+ML THYREPI++T QRL E+ Sbjct: 306 SLGNFITIRDVLNDGLPQLGEWGDNTVRDRWAGLAARLSMLQTHYREPINWTAQRLAESA 365 Query: 332 ILLSKWPQTSTSKGIIDP-------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI 384 L +W +G P AV +AL +DLN+ +AI AL R++ K D+ + Sbjct: 366 DELHRWYGLLRDEGFGAPEKLSHASAVAAALCDDLNSWAAITAL----RQAFKVRDVAAL 421 Query: 385 FNASAHILGIEVCKEHLNKNISI---------AIEKLVQERLILLKMKKFSSADYIRKQL 435 A ++G+ ++ I AI + ERL + K ++ AD IR +L Sbjct: 422 GEGMA-LMGLLDPYFVTASDVPIFARADVDASAIAARIAERLNFINAKNWAEADRIRDEL 480 Query: 436 ESKGFILEDYKNPDNGQRMTRW 457 +G L+D K+ G+R+T W Sbjct: 481 LQEGVQLKDSKDSATGERITTW 502 >gi|16331016|ref|NP_441744.1| cysteinyl-tRNA synthetase [Synechocystis sp. PCC 6803] gi|2500966|sp|P74330|SYC_SYNY3 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gi|1653511|dbj|BAA18424.1| cysteinyl-tRNA synthetase [Synechocystis sp. PCC 6803] Length = 483 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 165/504 (32%), Positives = 241/504 (47%), Gaps = 68/504 (13%) Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62 +++Y++L R Q + P + MY CG TVYD+ H+G+AR I +D++ R L++ Sbjct: 1 MTLRLYDSLTRAKQPLQPLHPGLVTMYCCGITVYDYCHLGHARTCITWDLVRRYLQWSGY 60 Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122 E V YV+N TDIDDKI++RA E + ++ K + +D L Sbjct: 61 E--VRYVQNFTDIDDKILKRAVDES------STMEAVSEKFIAAYFEDMEALGVQPADLY 112 Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTR---- 178 PRAT+ + + LI + G+AY + ++ + + YG S R++++ + G Sbjct: 113 PRATHTLDGIKRLIAELEAKGYAYPSGGDVYYSVRNFDGYGKLSGRRLEDLQAGASGRVT 172 Query: 179 --VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P+ K++P DF LWK + P EP WESPWG+GRPGWHIECSAM +LG+ D+H G Sbjct: 173 VADPDGAQKQDPFDFALWKSAKPGEPAWESPWGKGRPGWHIECSAMVREFLGETIDLHVG 232 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHENEIAQS + A W+HNG + ++G KMSKS GNF TI LL+T Sbjct: 233 GNDLIFPHHENEIAQSEAVTG-QPLAQYWLHNGMVKVDGEKMSKSLGNFTTIRALLKTV- 290 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQ----------------- 339