RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 597 bits (1543), Expect = e-171
Identities = 215/483 (44%), Positives = 287/483 (59%), Gaps = 49/483 (10%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+KIYNTL R+ EF+ ++P ++MYVCGPTVYD+AHIG+AR +VFDVL R LRY G K
Sbjct: 3 LKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYL-GYK 61
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
VTYVRNITDIDDKII+RA +E I + +T + F +D L L P +PR
Sbjct: 62 -VTYVRNITDIDDKIIKRANEEG--ESIKE----LTERYIAAFHEDMDALNVLPPDIEPR 114
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184
AT HIP++I LI+ +I GHAYEA+ ++ FD P+YG S R +DE + G RV
Sbjct: 115 ATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEE 174
Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ YLG+ FDIHGGG DLIFPH
Sbjct: 175 KRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPH 234
Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
HENEIAQS A + AN W+HNGF+ + G KMSKS GNF TI +LL+ +
Sbjct: 235 HENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKK-------YDP 286
Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------PQTSTSKGIIDPAV 351
V+R +L HYR P++F+ + L +A+ L +
Sbjct: 287 EVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETALGEDDEALLAELEEFKERF 346
Query: 352 LSALYNDLNTVSAIQALHKLARE-----STKNHDLLP----IFNASAHILGIEVCKEHL- 401
+ A+ +D NT A+ L +LARE TK+ + + A A +LG+E +E L
Sbjct: 347 IEAMDDDFNTPEALAVLFELAREINRALETKDKEAAAALAALLRALADVLGLEQDEEALF 406
Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457
++ + IE L++ER K K F+ AD IR +L + G +LED + T W
Sbjct: 407 EAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDG------TTW 460
Query: 458 KQK 460
++K
Sbjct: 461 RRK 463
>gnl|CDD|161877 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln).
Length = 465
Score = 430 bits (1108), Expect = e-121
Identities = 197/486 (40%), Positives = 278/486 (57%), Gaps = 54/486 (11%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNTL R+ EF+ + ++MYVCGPTVYD+ HIG+AR IVFDVL R LRY G K
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYL-GYK 59
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
V YV+NITDIDDKII+RAR+ S+ ++ + + + +D L L P +PR
Sbjct: 60 -VQYVQNITDIDDKIIKRARENGESVYE------VSERFIEAYFEDMKALNVLPPDLEPR 112
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183
AT HI ++I I+ +I G+AY ++N ++ FD S +YG S++ +D+ + G RV
Sbjct: 113 ATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDE 172
Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243
K+N DF+LWK S EP W+SPWG+GRPGWHIECSAM+ YLG DIHGGG+DLIFP
Sbjct: 173 AKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP 232
Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303
HHENEIAQS A ++ A W+HNGFL ++ KMSKS GNF T+ ++L K +
Sbjct: 233 HHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVL--KNYDPE--- 286
Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID----- 348
++R +L HYR P+DF+ ++RL +A +L S ++ +
Sbjct: 287 --ILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSGNQSLNKFPDEK 344
Query: 349 ---PAVLSALYNDLNTVSAIQALHKLARE------STKNHDLL-----PIFNASAHILGI 394
+ A+ +DLNT +A+ L +LA+ S + LL + + +LG+
Sbjct: 345 EFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSKADAALLIEHLIFLESRLGLLLGL 404
Query: 395 EVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452
N + IE L++ER I K K F+ AD IR +L KG +LED
Sbjct: 405 PSKPVQAGSNDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTPQG---- 460
Query: 453 RMTRWK 458
T W+
Sbjct: 461 --TTWR 464
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 362 bits (930), Expect = e-100
Identities = 190/512 (37%), Positives = 274/512 (53%), Gaps = 82/512 (16%)
Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62
+++ +YNT+ RK F+ + MYVCG T YD +HIG+AR + FDVLYR L++
Sbjct: 58 RELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGY 117
Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122
E V YVRN TD+DDKII RA + D IS+ + + ++F+ D L CL P+ +
Sbjct: 118 E--VRYVRNFTDVDDKIIARANELG-----EDPISL-SRRYCEEFLSDMAYLHCLPPSVE 169
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
PR ++HIPQ+I +I+ I+ +G AY + ++ F P YG S RK+++ + G RV
Sbjct: 170 PRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVD 229
Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242
KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+ YLG FDIHGGG+DL+F
Sbjct: 230 SRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 289
Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302
PHHENEIAQSC A + + WIHNGF+ ++ KMSKS GNF TI ++++ +
Sbjct: 290 PHHENEIAQSCAACC-DSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-------Y 341
Query: 303 PAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWP---------- 338
+RL +L THYR PI+++ Q L + E L +
Sbjct: 342 HPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPP 401
Query: 339 -------------QTSTSKGIIDPAVLSALYNDLNTVS----------------AIQALH 369
TS S + P L+AL L T++ ++ AL
Sbjct: 402 DTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALE 461
Query: 370 KLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFS 426
K R+ L+P +++ ++ +E + + E+++Q ER + K K++
Sbjct: 462 KKIRDVLSVLGLMP----TSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYE 517
Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458
+D IRK L + G L D +PD T W+
Sbjct: 518 KSDAIRKDLAAVGIALMD--SPDG----TTWR 543
>gnl|CDD|185597 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 327 bits (841), Expect = 3e-90
Identities = 160/424 (37%), Positives = 228/424 (53%), Gaps = 52/424 (12%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+ N+L EF + +R Y CGPTVYD +H+G+AR + FD++ R+L Y+G
Sbjct: 40 LKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYD 99
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
V YV NITDIDDKII+RAR+E SI + K ++F +D L P R
Sbjct: 100 -VFYVMNITDIDDKIIKRAREEKLSI-----FLELARKWEKEFFEDMKALNVRPPDVITR 153
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDT----SSIPNYGSFSRRKI-DEQKM---- 175
+ ++P+++ IQ II +G AYE+N + FD + Y + DE ++
Sbjct: 154 VSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGE 213
Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235
G K++P DF LWK S P EP W+SPWG+GRPGWHIECSAM+S+ LG DIH
Sbjct: 214 GALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHS 273
Query: 236 GGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294
GG+DL FPHH+NE+AQS D+ + N ++H+G L+++G KMSKS NFITI + L
Sbjct: 274 GGIDLKFPHHDNELAQSEAYFDK-HQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQAL-- 330
Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWPQT 340
K+ R IRL L+ + +P++++ + + EA +I L + T
Sbjct: 331 SKYTARQ-----IRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT 385
Query: 341 STSKGIIDP------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS 388
S K AV +AL ++ +T A+QAL KL S N L S
Sbjct: 386 SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLNSGEQPS 443
Query: 389 AHIL 392
A +L
Sbjct: 444 APLL 447
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 321 bits (823), Expect = 3e-88
Identities = 188/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%)
Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65
IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284
Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123
+TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P
Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338
Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV
Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 398
Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242
K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F
Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458
Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287
PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T
Sbjct: 459 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518
Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347
I E+L + + V+R +L HYR P++++ L +A+ L++ T +
Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 571
Query: 348 DPAV-----------LSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394
+ + +A+ +D TV A+ L +LA E K +D L A I+G+
Sbjct: 572 EFMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631
Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444
E L + IE L+ R K ++ +D IR L ILED
Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 689
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 303 bits (778), Expect = 5e-83
Identities = 166/509 (32%), Positives = 252/509 (49%), Gaps = 74/509 (14%)
Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63
+++YNTL R+ EFQ I+ ++R+Y CGPTVY++AHIGN R + D L R L + G
Sbjct: 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFL-GY 60
Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113
+ VT+V NITD+ +DK+++ A++ S+ I + T F +DT R
Sbjct: 61 R-VTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSV------LEIAAHYTAAFFRDTAR 113
Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173
L P+ AT HI MI LI+ + GH Y A + FD + P+YGS + +++
Sbjct: 114 LNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDL 173
Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKV 230
+ G R+ +K+NP DF+LW + E W+SPWGRG PGWHIECSAMS YLG+
Sbjct: 174 QAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQ 233
Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290
DIH GG+D I HH NEIAQ C A + W+H+ FL + KMSKS G F+T++
Sbjct: 234 CDIHIGGVDHIRVHHTNEIAQ-CEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSS 292
Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL-------LSKWPQTSTS 343
L E + + R +L HYR + F+ + L A+ +++ + +
Sbjct: 293 LQE------KGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARA 346
Query: 344 KGIIDPAVL------------------------SALYNDLNTVSAIQALHKLAREST-KN 378
L +AL +D +T A+ L KL ++++
Sbjct: 347 TTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSVPP 406
Query: 379 HDLLPIFNASAHILGIEVCKE---HLNKNISIA-----IEKLVQERLILLKMKKFSSADY 430
L + A +LG+ + +E L+ + I +L++ R + K F AD
Sbjct: 407 SLCLSVLQAMDTVLGLGLIQEATASLSAQVPAGPSEEEIGQLIEARAHARQTKDFPLADE 466
Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWKQ 459
IR +L+++G LED T WK+
Sbjct: 467 IRDKLKAEGIELEDTHLG------TIWKR 489
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 257 bits (660), Expect = 4e-69
Identities = 129/358 (36%), Positives = 190/358 (53%), Gaps = 33/358 (9%)
Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86
MYVCG T YD H+G+A + FD++ R+ R G V YV+N+TD+DD ++ERA ++
Sbjct: 11 TMYVCGITPYDATHLGHAATYLAFDLVNRVWRDA-GHD-VHYVQNVTDVDDPLLERAARD 68
Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146
D + + F +D L L P A IP+++ L++ ++ G AY
Sbjct: 69 G-----VDWRDLAERE-IALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAY 122
Query: 147 EANNE----IIFDTSSIPNYGSFSRRKIDEQKM----GTRV--PEKYHKKNPADFILWKR 196
++E + F + P +G S D M R P++ K++P D +LW+
Sbjct: 123 VVDDEEYPDVYFSVDATPQFGYESG--YDRATMLELFAERGGDPDRPGKRDPLDALLWRA 180
Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256
+ P EP W SP+G GRPGWHIECSA++ + LG FDI GGG DLIFPHHE A + A
Sbjct: 181 ARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAAT 240
Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316
+ A ++H G + L+G KMSKS GN + ++ L PA IRLA+L HY
Sbjct: 241 GERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLR-----AAGVDPA-AIRLALLAGHY 294
Query: 317 REPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQAL 368
R ++T L EAE L++W P + ++ V +AL +DL+T A+ A+
Sbjct: 295 RADREWTDAVLAEAEARLARWRAAAALPAGPDAADVVA-RVRAALADDLDTPGALAAV 351
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione.
Length = 411
Score = 256 bits (657), Expect = 6e-69
Identities = 127/391 (32%), Positives = 198/391 (50%), Gaps = 37/391 (9%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+++++T + ++ + MYVCG T YD H+G+A + FD++ R+ R
Sbjct: 18 LRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRD--AGH 73
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAIS--IITSKNTQQFVKDTTRLACLAPTHQ 122
V YV+N+TD+DD + ERA + D + + + F +D L L P
Sbjct: 74 RVHYVQNVTDVDDPLFERAER--------DGVDWRELGTSQIDLFREDMEALRVLPPRDY 125
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTR 178
A I ++I +++ ++ G AYE + F + +G S D M
Sbjct: 126 IGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESG--YDRATMLEL 183
Query: 179 V------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232
P++ K++P D +LW+ + EP W+SP+G GRPGWHIECSA++++ LG FD
Sbjct: 184 FAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFD 243
Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292
I GGG DLIFPHHE A + A + + A ++H G + L+G KMSKS GN + +++L
Sbjct: 244 IQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKL- 302
Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL 352
+ G PA IRL +L HYR+ D+T L EAE L++W + D L
Sbjct: 303 --RAAGVD--PA-AIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATDAPDATDL 357
Query: 353 -----SALYNDLNTVSAIQALHKLARESTKN 378
L NDL+T +A+ A+ A + +
Sbjct: 358 IARLRQHLANDLDTPAALAAVDNWAAAALSS 388
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 218 bits (557), Expect = 2e-57
Identities = 155/489 (31%), Positives = 238/489 (48%), Gaps = 65/489 (13%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNT + ++E + S++++Y CGPTVY++AHIGN R I D+L + LR
Sbjct: 3 LKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLL-KYN 59
Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114
V Y NITDI +DK+++ AR+ ++ I+ T+ F D +L
Sbjct: 60 -VNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTV------YEISRFFTEAFFDDCKKL 112
Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174
+ P A+ +IP MI +++ + +G Y N + FDTS +YG + +++ K
Sbjct: 113 NIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFK 172
Query: 175 MGT--RVPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229
+ RV K+N +DF+LW + E W+SPWG G P WH+EC+AM+ Y
Sbjct: 173 DMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKS 232
Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289
DIH GG+D I HH NEIA + C +K ++++H FL +E KMSKSN NFITI
Sbjct: 233 TLDIHLGGVDHIGVHHINEIAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIK 291
Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSK 344
+ LE + F +P+ R L HYR + FT L +I +L+K +S
Sbjct: 292 D-LEDQGF------SPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSL 344
Query: 345 GIIDPAVLSA------------LYN--------DLNTVSAIQALHKLARE----STKNHD 380
D +L+ Y+ DLN + L + ++
Sbjct: 345 DQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLSFLSKLR 404
Query: 381 LLPIFNASAHI-LGIEVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLES 437
L F+ + L E+ +E N I I ++ L++ER + K F AD IR+ S
Sbjct: 405 LAFKFDEVLSLGLREEILREIENHRIVIDDNMKSLIEERRLAKCEKDFKRADEIREYFAS 464
Query: 438 KGFILEDYK 446
KGF+L D +
Sbjct: 465 KGFVLIDTE 473
>gnl|CDD|178889 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 47.1 bits (113), Expect = 9e-06
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR--LAMLMTHYREPIDFT-- 323
+GFL +EG KMSKS G FI L+ +R LA + + +DF
Sbjct: 320 HGFLTVEGAKMSKSRGTFIWARTYLDH-------LDPDYLRYYLAAKLPETIDDLDFNWE 372
Query: 324 --VQR 326
QR
Sbjct: 373 DFQQR 377
>gnl|CDD|117876 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 45.7 bits (109), Expect = 3e-05
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR--LAMLMTHYREPIDFTVQ 325
+G+L +EG KMSKS GN + +ELL+ + +R LA ++ DF+ +
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDR-------YGVDALRYYLAREAPEGKD-GDFSWE 366
Query: 326 RLTE 329
E
Sbjct: 367 DFVE 370
>gnl|CDD|183418 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 44.5 bits (106), Expect = 6e-05
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 7/43 (16%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310
NGF+ LEG+KMSKS GN I + + +E ++G A V+RL
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIE--EYG-----ADVVRLY 603
>gnl|CDD|183390 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 44.1 bits (105), Expect = 8e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLE 293
+ +L LEG K SKS G I +++ LE
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALE 350
>gnl|CDD|183364 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 43.0 bits (102), Expect = 2e-04
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFG 298
+GFL L+G KMSKS GN I +L++ ++G
Sbjct: 290 HGFLTLDGEKMSKSLGNVIDPFDLVD--EYG 318
>gnl|CDD|161856 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS.
Length = 938
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 7/45 (15%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312
NG++ LEG+KMSKS GN +T+ + +E KFG A V RL +
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVE--KFG-----ADVARLYIA 648
>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 39.8 bits (94), Expect = 0.002
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 263 NIWIHNGF-LNLEGRKMSKSNGNFITINELLETKKFGG---RSWPA 304
NI I +G L+ +G+KMSKS GN +T ELLE K+G R W A
Sbjct: 519 NIMI-SGMVLDPDGKKMSKSKGNVVTPEELLE--KYGADAVRYWAA 561
>gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 38.9 bits (91), Expect = 0.003
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLET 294
NG L L KMSKS GNF+T+ + +E
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEE 735
>gnl|CDD|161858 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
this model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain.
Length = 530
Score = 37.4 bits (87), Expect = 0.008
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 269 GFLNLEGRKMSKSNGNFITINELLE 293
G+L +EG KMSKS GN + ++LL
Sbjct: 319 GYLTVEGGKMSKSLGNVVDPSDLLA 343
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 37.1 bits (87), Expect = 0.010
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 266 IHNGF---LNLEGRKMSKSNGNFITINELLE----------TKKFGGRSWPAPVIRLAML 312
+H EG KMS GN +T+++LL+ +K + +R L
Sbjct: 308 LHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDL 367
Query: 313 MTHYREPIDFTVQRLTEAE 331
+ +DF + E
Sbjct: 368 SRSRDKDLDFDLDLALSFE 386
Score = 28.6 bits (65), Expect = 3.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 40 HIGNARPMIVFDVLYRLLR---------YYYG 62
H+G+ R ++ D L R+L YY
Sbjct: 127 HVGHLRSAVIGDALARILEFAGYDVTREYYVN 158
>gnl|CDD|180364 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 36.7 bits (86), Expect = 0.013
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 268 NGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313
+G L+ +G+KMSKS GN++ E+ + K+G A +R +L
Sbjct: 582 HGHVLDEDGQKMSKSLGNYVDPFEVFD--KYG-----ADALRWYLLS 621
>gnl|CDD|161854 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms.
Length = 861
Score = 36.6 bits (85), Expect = 0.014
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324
I +GF L+ +GRKMSKS GN + +++ K+G A ++RL + + E + F+
Sbjct: 599 ITHGFTLDEKGRKMSKSLGNVVDPLKVI--NKYG-----ADILRLYVASSDPWEDLRFSD 651
Query: 325 QRLTEAE 331
+ L +
Sbjct: 652 EILKQVV 658
>gnl|CDD|179109 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 36.3 bits (85), Expect = 0.015
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 270 FLNLEGRKMSKSNGNFITINELLE 293
FL+ +G K+SKS GN ITI + LE
Sbjct: 273 FLDKKGEKISKSKGNVITIEDWLE 296
>gnl|CDD|180231 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 34.7 bits (81), Expect = 0.054
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 274 EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318
+GRKMSKS GN I ++ KK+G A ++RL + T Y
Sbjct: 589 KGRKMSKSLGNVIDPQDV--IKKYG-----ADILRLWVASTDYSG 626
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 34.5 bits (80), Expect = 0.056
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 273 LEGRKMSKSNGNFITINE 290
L+G+KMSKS GN I + E
Sbjct: 260 LDGQKMSKSYGNTIGLRE 277
>gnl|CDD|184337 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 33.8 bits (78), Expect = 0.093
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 269 GF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318
GF L+ +G KMSKS GN ++ +++ K+ G A ++RL + Y +
Sbjct: 621 GFTLDEKGEKMSKSLGNTVSPQDVI--KQSG-----ADILRLWVASVDYSD 664
>gnl|CDD|129073 smart00840, DALR_2, This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 56
Score = 32.9 bits (76), Expect = 0.20
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 354 ALYNDLNTVSAIQALHKLARE------STKNHDLLP----IFNASAHILGIE 395
A+ +D NT A+ L +LARE + + L + A +LG+
Sbjct: 5 AMDDDFNTPEALAVLFELAREINRLLLKAVDAEELAALAALLRALGGVLGLL 56
>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 32.5 bits (75), Expect = 0.27
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 269 GFLNLEGRKMSKSNGNFITINELLETKKFG 298
G+ ++ KMSKS GN + EL++ ++G
Sbjct: 291 GWWLMKDGKMSKSKGNVVDPEELVD--RYG 318
>gnl|CDD|150019 pfam09190, DALR_2, DALR domain. This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 62
Score = 32.2 bits (74), Expect = 0.28
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPI--------FNASAHILGI 394
+ A+ +D NT AI L +LA+E + + A +LG+
Sbjct: 1 RFIEAMDDDFNTPEAIAVLFELAKEINRALNEGDEKLAALAATLRALGGVLGL 53
>gnl|CDD|181677 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 30.8 bits (70), Expect = 0.74
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 302 WP------APVIRLA-MLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSA 354
WP LA L+ P F Q L A LSKWP + + A+
Sbjct: 637 WPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAAL-ALAER 695
Query: 355 LYNDLNTVSAIQALH 369
L + A A
Sbjct: 696 LAREAGLRQAFDAQG 710
Score = 29.3 bits (66), Expect = 2.0
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 21/75 (28%)
Query: 334 LSKWPQTSTSKGII---------DPAVLSAL-----YNDLNTVS-------AIQALHKLA 372
LSKWP T + + +L A+ N LN +S A LA
Sbjct: 298 LSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALA 357
Query: 373 RESTKNHDLLPIFNA 387
++ L NA
Sbjct: 358 ARLARDAGLRRALNA 372
>gnl|CDD|180225 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 30.5 bits (70), Expect = 1.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 274 EGRKMSKSNGNFI 286
+GRKMSKS GN I
Sbjct: 517 QGRKMSKSKGNVI 529
>gnl|CDD|147935 pfam06043, Reo_P9, Reovirus P9-like family.
Length = 333
Score = 29.8 bits (67), Expect = 1.6
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 98 IITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQM---IYLIQNIILHGHAYEANNEIIF 154
I T+ N F +T + T +T P + IY + N +LHG +E ++ F
Sbjct: 17 ITTTNNQNNFNTNTQNNS---NTENRNSTKRKPILDDGIYHLLNYLLHGTTFEKSHYCGF 73
Query: 155 DTSSIPN 161
D S +P
Sbjct: 74 DYSHLPT 80
>gnl|CDD|180311 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 29.7 bits (68), Expect = 1.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 272 NLEGRKMSKSNGNFITINE 290
L+G+KM KS GN + ++E
Sbjct: 227 GLDGKKMGKSEGNAVWLDE 245
>gnl|CDD|183402 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 29.2 bits (66), Expect = 2.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 273 LEGRKMSKSNGNFI 286
L+GRKMSKS N I
Sbjct: 198 LDGRKMSKSYDNTI 211
>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches.
Length = 842
Score = 29.3 bits (66), Expect = 2.3
Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 26/157 (16%)
Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILL 334
KMSKS GN I E++ KK G A +RL ++ + PI +++
Sbjct: 602 YEKMSKSKGNGIDPQEIV--KKHG-----ADALRLYIM---FMGPIAASLEWNDSGLEGA 651
Query: 335 SKWPQ---TSTSKGIIDPAVLSALYN-DLNTVSA--IQALHKLARESTKNHDLLPIFNAS 388
++ + + + L L + +HK ++ T++ + L FN
Sbjct: 652 RRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFN-- 709
Query: 389 AHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKKF 425
I LN + K ++ L L +K F
Sbjct: 710 ---TAISAMMILLNA-----LYKAKKDALYLEYLKGF 738
>gnl|CDD|166584 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 29.1 bits (65), Expect = 2.6
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323
+++H + +GRKMSK+ GN I+ L K+FG +R + + + ++ +
Sbjct: 570 VYLHGLIRDSQGRKMSKTLGN--VIDPLDTIKEFG-----TDALRFTLALGTAGQDLNLS 622
Query: 324 VQRLTEAEILLSK 336
+RLT + +K
Sbjct: 623 TERLTSNKAFTNK 635
>gnl|CDD|150349 pfam09655, Nitr_red_assoc, Conserved nitrate reductase-associated
protein (Nitr_red_assoc). Proteins in this entry are
found in the Cyanobacteria, and are mostly encoded near
nitrate reductase and molybdopterin biosynthesis genes.
Molybdopterin guanine dinucleotide is a cofactor for
nitrate reductase. These proteins are sometimes
annotated as nitrate reductase-associated proteins,
though their function is unknown.
Length = 144
Score = 28.8 bits (65), Expect = 2.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 367 ALHKLARESTKNHDLLPIFNA 387
AL KL+R +NH+ LP
Sbjct: 123 ALIKLSRPGHENHNFLPALKE 143
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 28.9 bits (65), Expect = 2.9
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 273 LEGRKMSKSNGNFI 286
L+GRKMSKS GN I
Sbjct: 198 LDGRKMSKSYGNVI 211
>gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form
a separate orthologous set.
Length = 515
Score = 28.7 bits (64), Expect = 3.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITD 74
P N+ G T HIGN R +I D + R LR E Y+ + D
Sbjct: 16 PKNLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYD 67
>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase.
Length = 861
Score = 28.9 bits (65), Expect = 3.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 264 IWIHNGFLNLEGRKMSKSNGNFITINELLE 293
++IH + +GRKMSKS GN I +++E
Sbjct: 512 VYIHGLVRDEQGRKMSKSLGNVIDPLDVIE 541
>gnl|CDD|183993 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 28.3 bits (64), Expect = 3.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 271 LNLEGRKMSKSNGNFITINE 290
+G KM KS G I ++
Sbjct: 224 EGADGTKMGKSAGGAIWLDP 243
>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 28.4 bits (64), Expect = 3.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 275 GRKMSKSNGNFITINELLE 293
G KMSKS GN I E++E
Sbjct: 583 GEKMSKSKGNVIDPLEVIE 601
>gnl|CDD|115108 pfam06431, Polyoma_lg_T_C, Polyomavirus large T antigen C-terminus.
Length = 417
Score = 28.0 bits (62), Expect = 4.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 398 KEHLNKNISI-----------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILE 443
K+HLNK I ++ K +Q R + + F DY+RK LE F+LE
Sbjct: 247 KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFV--RQIDFRPKDYLRKSLERSEFLLE 301
>gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 28.3 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP-APVIR 308
IH G L +EG +S S I + +E ++ G P P +R
Sbjct: 327 IHYGRLKIEGFVLSTS-----KIRKGIEEGEYSGWDDPRLPTLR 365
>gnl|CDD|184227 PRK13670, PRK13670, hypothetical protein; Provisional.
Length = 388
Score = 28.2 bits (64), Expect = 5.1
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 22/98 (22%)
Query: 367 ALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISI---AIEKLVQERLILLKMK 423
AL + E N DL + +ILG+E K +I I++
Sbjct: 145 ALEEFLGE--INFDL----STPNNILGLEYAKAIAKLGSNIKLHTIKREGAGYHDEELDG 198
Query: 424 KFSSADYIRKQLESKG-------------FILEDYKNP 448
+F+SA IRK L K +L+ Y P
Sbjct: 199 EFASATAIRKALLEKDLDELKKFVPKATLELLKRYIGP 236
>gnl|CDD|162095 TIGR00895, 2A0115, benzoate transport.
Length = 398
Score = 27.7 bits (62), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEA 330
AP++ L +LM E IDF V + E
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKRPET 206
>gnl|CDD|183124 PRK11412, PRK11412, putative uracil/xanthine transporter;
Provisional.
Length = 433
Score = 27.4 bits (61), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 345 GIIDPAVLSALYNDLNTVSAIQA 367
GII AV++ L N NT AI+
Sbjct: 240 GIILTAVITGLVNISNTYGAIRG 262
>gnl|CDD|180841 PRK07106, PRK07106, 5-aminoimidazole-4-carboxamide ribonucleotide
transformylase; Provisional.
Length = 390
Score = 27.3 bits (61), Expect = 8.6
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 23/70 (32%)
Query: 70 RNITDIDDKIIERARQEHPSIPINDA----ISIITSKNTQQ----FVKD----------- 110
RN ID+ +++ E+ +P I++IT K TQ + KD
Sbjct: 188 RNELKIDEDLLKNIVTENKELPDEAKRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQ 247
Query: 111 ----TTRLAC 116
TRLA
Sbjct: 248 SRIHCTRLAG 257
>gnl|CDD|128443 smart00138, MeTrc, Methyltransferase, chemotaxis proteins.
Methylates methyl-accepting chemotaxis proteins to form
gamma-glutamyl methyl ester residues.
Length = 264
Score = 27.2 bits (61), Expect = 8.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 73 TDIDDKIIERARQ 85
TDID K +E+AR
Sbjct: 138 TDIDLKALEKARA 150
>gnl|CDD|116012 pfam07389, DUF1500, Protein of unknown function (DUF1500). This
family consists of several Orthopoxvirus specific
proteins of around 100 residues in length. The function
of this family is unknown.
Length = 100
Score = 27.3 bits (60), Expect = 8.8
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 56 LLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN-TQQFVKDT 111
LLR+YY ++ + Y + + + I R IP +D + I+ +++ +Q+V DT
Sbjct: 17 LLRHYYDKRFIVYGISNAILHN--IYRLFTRCAVIPFDDIVRIMPNESCVKQWVIDT 71
>gnl|CDD|117046 pfam08469, NPHI_C, Nucleoside triphosphatase I C-terminal. This
viral domain is found to the C-terminus of Poxvirus
nucleoside triphosphatase phosphohydrolase I (NPH I)
together with the helicase conserved C-terminal domain
(pfam00271).
Length = 148
Score = 27.3 bits (61), Expect = 9.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 257 RIEKTANIW---------IHNGFLNLEGRKMSKSNGNFIT 287
++ NIW IH GF +GR + S+GNF+
Sbjct: 92 KLALGQNIWYSKSYRLVTIHKGFKTKDGR-IYDSDGNFLK 130
>gnl|CDD|178518 PLN02930, PLN02930, CDP-diacylglycerol-serine
O-phosphatidyltransferase.
Length = 353
Score = 27.0 bits (60), Expect = 9.8
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 262 ANIWIHNGFLNLEGRKMSKSNGNF------ITINELLETKKFGGRSWPAP 305
A I L+ RK K G F I I ELL KFG +P P
Sbjct: 304 AIPTIREYNSFLQDRKPVKKLGAFCWLSLAICIVELLICIKFGHGLFPKP 353
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.415
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,688,745
Number of extensions: 495489
Number of successful extensions: 1056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 66
Length of query: 461
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,898,497
Effective search space: 1419052908
Effective search space used: 1419052908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)