RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)



>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
           E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
           c.26.1.1 PDB: 1li7_A 1u0b_B
          Length = 461

 Score =  422 bits (1087), Expect = e-119
 Identities = 177/482 (36%), Positives = 254/482 (52%), Gaps = 48/482 (9%)

Query: 5   IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
           +KI+NTL R+  EF+ I    + MYVCG TVYD  HIG+ R  + FDV+ R LR+   + 
Sbjct: 2   LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60

Query: 65  CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
            + YVRNITDIDDKII+RA +        ++   +  +   +  KD   L  L P  +PR
Sbjct: 61  -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113

Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIF-DTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183
           AT+HI ++I L + +I  GHAY A+N  +  D  + P YG  SR+ +D+ + G RV    
Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173

Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243
            K+NP DF+LWK S   EP W SPWG GRPGWHIECSAM+   LG  FDIHGGG DL+FP
Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233

Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303
           HHENEIAQS CA    +  N W+H+G + ++  KMSKS GNF T+ ++L+        + 
Sbjct: 234 HHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-------YD 285

Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354
           A  +R  ++  HYR  ++++ + L +A   L +                    +   + A
Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345

Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI--------EVCK 398
           + +D NT  A   L  +ARE  +           +       + +LG+            
Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405

Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458
              + +    IE L+Q+RL   K K +++AD  R +L   G +LED          T W+
Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ------GTTWR 459

Query: 459 QK 460
           +K
Sbjct: 460 RK 461


>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
           inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
           synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
           smegmatis}
          Length = 414

 Score =  364 bits (935), Expect = e-101
 Identities = 120/409 (29%), Positives = 192/409 (46%), Gaps = 34/409 (8%)

Query: 5   IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
           ++++++ +R++            MYVCG T YD  H+G+A   + FD+++RL        
Sbjct: 21  LRLFDSADRQVRPVTPGP--TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHT- 77

Query: 65  CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
            V YV+N+TD+DD + ERA ++            +  + TQ F +D   L  L P     
Sbjct: 78  -VQYVQNVTDVDDPLFERAERDGIDWRT------LGDRETQLFREDMAALRVLPPHDYVA 130

Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179
           AT+ I +++ +++ ++  G AY   +     + F   +   +G  S    D         
Sbjct: 131 ATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAER 190

Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236
              P++  K +  D +LW+   P EP W SP+GRGRPGWH+ECSA++   +G   DI GG
Sbjct: 191 GGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGG 250

Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296
           G DLIFPHHE   A +       + A  ++H G +  +G KMSKS GN + +++L     
Sbjct: 251 GSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQG- 309

Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP-----AV 351
                     IRL +   HYRE   ++ + L EA   L++W   +      D       V
Sbjct: 310 -----VDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATDVIARV 364

Query: 352 LSALYNDLNTVSAIQALHKLARE--STKNHD---LLPIFNASAHILGIE 395
              L +DL+T  A+ AL     +  S   HD      +      +LG++
Sbjct: 365 RQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVATTVDALLGVD 413


>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
           rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
           horikoshii} SCOP: a.97.1.2 c.26.1.1
          Length = 523

 Score =  137 bits (346), Expect = 4e-33
 Identities = 42/318 (13%), Positives = 94/318 (29%), Gaps = 28/318 (8%)

Query: 22  DPSNIRMYV--CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID--D 77
           +      YV   G T   + H+GN R +    ++   LR    E  V ++    D D   
Sbjct: 15  ERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE--VRHIHMWDDYDRFR 72

Query: 78  KI---IERARQEHPSIPINDAISI------ITSKNTQQFVKDTTRLACLAPTHQPRATNH 128
           K+   + +  +++  +PI++                ++F ++  +L              
Sbjct: 73  KVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYK 132

Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188
             +    I+                 + +  P     +           R   +  + + 
Sbjct: 133 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQP-PLPENWWPAMVYCPEHRREAEIIEWDG 191

Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248
              + +K     E   +   G  +  W ++       +     D    G D +      +
Sbjct: 192 GWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYD 248

Query: 249 IAQSCCADRIEKTANIWIHNGFL--NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306
             +    +   K A + +   F+    +  KMS S GN I +++L              +
Sbjct: 249 TGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLY-------EVLEPGL 301

Query: 307 IRLAMLMTHYREPIDFTV 324
           +R         + I   +
Sbjct: 302 VRFIYARHRPNKEIKIDL 319


>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation,
           ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC
           5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP:
           a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
          Length = 607

 Score = 98.2 bits (244), Expect = 4e-21
 Identities = 46/385 (11%), Positives = 97/385 (25%), Gaps = 61/385 (15%)

Query: 40  HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR--------QEHPSIP 91
           H G+ R  I+   L  L     G + V  +  + D   +    A         +     P
Sbjct: 159 HAGHLRSTIIGGFLANLYE-KLGWE-VIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDP 216

Query: 92  INDAISIITSKNTQ-----QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146
           I+    +    N         +         A  +  R  +   + + + +         
Sbjct: 217 IHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEK 276

Query: 147 EANN--------EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRST 198
             +         ++    S +        + ID  K      E        D   + +  
Sbjct: 277 YIDTYARLNIKYDVYSGESQVSKES--MLKAIDLFKEKGLTHED-KGAVLIDLTKFNKKL 333

Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258
                 +S          +  +          FD     +      H  +  +       
Sbjct: 334 GKAIVQKSDGTTLYLTRDVGAAMDRYEKYH--FDKMIYVIASQQDLHAAQFFEILKQMGF 391

Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP------------- 305
           E  A    H  F  ++G  MS   G  + ++ +LE  K                      
Sbjct: 392 E-WAKDLQHVNFGMVQG--MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEE 448

Query: 306 --------VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIID 348
                    + +  +        +F  +R+   E     + Q +          + GI  
Sbjct: 449 VADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQ 508

Query: 349 PAVLSALYNDLNTVSAIQALHKLAR 373
              ++A ++ L   +A   +  L +
Sbjct: 509 EKWINADFSLLKEPAAKLLIRLLGQ 533


>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
           PDB: 2ct8_A*
          Length = 497

 Score = 77.4 bits (189), Expect = 6e-15
 Identities = 52/316 (16%), Positives = 89/316 (28%), Gaps = 61/316 (19%)

Query: 27  RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84
           + YV  P  Y  D  H+G+A   I  D + R  R       V ++    +   KI ++A 
Sbjct: 6   KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYR-LRDYD-VFFLTGTDEHGLKIQKKAE 63

Query: 85  QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL--H 142
           +         +   +  +N ++F K    L     T   R T+                 
Sbjct: 64  EL------GISPKELVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQKVFEECYKR 116

Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-------------------KY 183
           G  Y    E  +              +     +  +  E                   + 
Sbjct: 117 GDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLEL 176

Query: 184 HKKNPADF-------ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF----- 231
           ++KNP           +                R R  W I       H +   F     
Sbjct: 177 YEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFN 236

Query: 232 ---------------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276
                          D+H  G D++  H     A         +       +G+  +EG+
Sbjct: 237 YISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLG--YELPKKVFAHGWWTVEGK 294

Query: 277 KMSKSNGNFITINELL 292
           KMSK+ GN +   E++
Sbjct: 295 KMSKTLGNVVDPYEVV 310


>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
           biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
           CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
          Length = 524

 Score = 76.3 bits (187), Expect = 1e-14
 Identities = 58/349 (16%), Positives = 101/349 (28%), Gaps = 79/349 (22%)

Query: 40  HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99
           HIG+A   I  D + R  R   G   V Y+        K+ E A +E   IP  +    +
Sbjct: 28  HIGHAYEYIATDAIARFKRLD-GYD-VRYLTGTDVHGQKMAETAAKEG--IPAAE----L 79

Query: 100 TSKNTQQFVKDTTRLACLAP----THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155
             +N+  F +   +L         T       H      + + +   G  Y    +  + 
Sbjct: 80  ARRNSDVFQRLQEKLNISFDRFIRTSDAD---HYEASKAIWKRMADAGDIYLDAYKGWYS 136

Query: 156 TSSIPNYGSFSRRKIDEQKM-----GTRVPEK------------------YHKKNPADFI 192
                 +      +  +        G  V                      ++++P +FI
Sbjct: 137 IRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHP-EFI 195

Query: 193 LWKRSTPMEPGWES-------------PWGRGRPGW-----HIECSAMSSHYLGKVF--- 231
                      + S              WG   P       ++   A++++  G  F   
Sbjct: 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDT 255

Query: 232 -----------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280
                      D+H  G D+I  H     A    A            +G+L   G KMSK
Sbjct: 256 ESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG--LPLPKRIFAHGWLLNRGEKMSK 313

Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329
           S GN +    L++   FG       V    +    + +   +    +  
Sbjct: 314 SIGNVVDPVNLVD--TFG----LDQVRYFLLREVPFGQDGSYNEDAIIG 356


>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
           structural genomics, NPPSFA; 1.80A {Thermus
           thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
           2d54_A
          Length = 500

 Score = 61.3 bits (147), Expect = 5e-10
 Identities = 42/316 (13%), Positives = 78/316 (24%), Gaps = 59/316 (18%)

Query: 29  YVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86
           YV  P  Y     H+G+A   +V D L R  R   G +   ++    +  + +   A+  
Sbjct: 6   YVTTPIYYVNAEPHLGHAYTTVVADFLARWHR-LDGYR-TFFLTGTDEHGETVYRAAQAA 63

Query: 87  HPSIPINDAISIITSKNTQQFVKDTTRLACLAP----THQPRATNHIPQMIYLIQNIILH 142
                  +       + + +F +    L         T + R    +  ++  +      
Sbjct: 64  ------GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDI 117

Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS----- 197
            +        +                    +   R  E  +      +  W +      
Sbjct: 118 YYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQEN 177

Query: 198 ------------------------TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233
                                   +   P    PWG   P      + +    L      
Sbjct: 178 PDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237

Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIW----------------IHNGFLNLEGRK 277
                   +             D ++  A  W                +    L  +GRK
Sbjct: 238 LDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRK 297

Query: 278 MSKSNGNFITINELLE 293
           MSK+ GN +    LLE
Sbjct: 298 MSKTLGNVVDPFALLE 313


>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
           acid, aminoacylation, trnaLeu, structural genomics;
           2.05A {Pyrococcus horikoshii}
          Length = 810

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206
           E   E + D++    Y + SR     ++ G   PEK   +      L + S   E   E 
Sbjct: 523 EWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEK 582

Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266
             G      H         Y     D    G DLI  H    I       R E       
Sbjct: 583 KTGIPAEIIHEMKEEFEYWYP---LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIA 639

Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQ 325
            NGF  LEG+KMSKS GN +   + +E  + G     A V+RL ++ +  +    D+  +
Sbjct: 640 VNGFGTLEGQKMSKSKGNVLNFIDAIE--ENG-----ADVVRLYIMSLAEHDSDFDWRRK 692

Query: 326 RLTEAEILLSK 336
            + +    + +
Sbjct: 693 EVGKLRKQIER 703


>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
           tRNA ligase metrs, methionine, translation, ATP-binding;
           HET: ME8; 2.00A {Leishmania major}
          Length = 564

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 53/325 (16%), Positives = 100/325 (30%), Gaps = 88/325 (27%)

Query: 40  HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPSIPINDAI 96
           HIG+    ++ DVL R  R   GE+    V  +T  D+   K+ E A ++   +   D  
Sbjct: 42  HIGHVYSTLIVDVLGRYHR-VKGEE----VFVMTGTDEHGQKVAEAAAKQG--VSPMD-- 92

Query: 97  SIITSKNTQQFVKDTTRLAC--------LAPTHQPRATNHIPQMIYLIQNIIL--HGHAY 146
              T+  + +F +    +            PTH+ +    I + +    +I L  +   Y
Sbjct: 93  --FTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHE-KLVQDIWKKLAAKGDIYLGKYEGWY 149

Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP-------ADFIL------ 193
             ++E      ++ +      +          V     ++N         + +L      
Sbjct: 150 SVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209

Query: 194 -------------------------WKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYL 227
                                      R       W  P  G  R   ++   A+ ++Y 
Sbjct: 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYT 269

Query: 228 GKVF----------------------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265
           G +                       D+H  G D++  H     A    A+         
Sbjct: 270 GALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAE--LPLPERL 327

Query: 266 IHNGFLNLEGRKMSKSNGNFITINE 290
           + +G+   + +K+SKS GN     E
Sbjct: 328 VSHGWWTKDHKKISKSLGNAFDPVE 352


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 61/387 (15%), Positives = 113/387 (29%), Gaps = 184/387 (47%)

Query: 21  IDPSNIRMYVCGPTVYDFAHIGNARPMIV---------FDVLYRLLR------YYYGEKC 65
             P  +R Y+ G T       G+++ ++          ++  +  +R      ++ G +C
Sbjct: 258 FTPGELRSYLKGAT-------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310

Query: 66  -VTYVRNITDIDDKIIERARQEH----PSIPINDAISI--ITSKNTQQFVKDTTRLACLA 118
              Y    T +   I+E +  E+    PS P+   +SI  +T +  Q +V  T       
Sbjct: 311 YEAYPN--TSLPPSILEDS-LENNEGVPS-PM---LSISNLTQEQVQDYVNKTNS----- 358

Query: 119 PTHQPRATNHIPQMIYLI---QNII-------LHG-----HAYEANNEIIFDTSSIPNYG 163
             H P     +   I L+   +N++       L+G        +A + +  D S IP   
Sbjct: 359 --HLPA-GKQV--EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQSRIP--- 408

Query: 164 SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223
            FS RK           +  ++  P   +    ++P               +H       
Sbjct: 409 -FSERK----------LKFSNRFLP---V----ASP---------------FH------- 428

Query: 224 SHYLGKVF-----DIHGGGL-----DLIFP-HHENEIAQSCCADRIEKTANIWIHNGFLN 272
           SH L         D+    +     D+  P +                T +         
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD---------------TFD--------- 464

Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332
             G  +   +G+                       R+   +     P+            
Sbjct: 465 --GSDLRVLSGSIS----------------E----RIVDCIIR--LPVK----------- 489

Query: 333 LLSKWPQTSTSKG--IID--PAVLSAL 355
               W  T+  K   I+D  P   S L
Sbjct: 490 ----WETTTQFKATHILDFGPGGASGL 512



 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 75/519 (14%), Positives = 131/519 (25%), Gaps = 237/519 (45%)

Query: 11  LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70
           L   +TEF+         Y+ G  ++  A                L++ Y     +   R
Sbjct: 84  LNLCLTEFE-------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKR 135

Query: 71  NITDI-DDKIIERARQEHPSI-------------------------P-INDAISIIT--- 100
                 +  +     + +  +                           + D I       
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195

Query: 101 ---SKNTQQFVKDTTR----LACLA-PTHQPRATNHI-------PQMIYLIQNIILH--- 142
               + T    K  T+    L  L  P++ P   +++       P +I +IQ  + H   
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCP-LIGVIQ--LAHYVV 251

Query: 143 --------------------GHA------------------YEANN---EIIFDTSSIPN 161
                               GH+                  + +      ++F       
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF------- 304

Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG-----WESPWGRGRPGWH 216
              F         +G R  E Y    P        +T + P       E+    G P   
Sbjct: 305 ---F---------IGVRCYEAY----P--------NTSLPPSILEDSLEN--NEGVP--- 335

Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276
              S M S        I     + +  +             + KT      N  L   G+
Sbjct: 336 ---SPMLS--------ISNLTQEQVQDY-------------VNKT------NSHLP-AGK 364

Query: 277 KMSKS--NG--NF-IT--------INELLETKK-----------FGGRSWPAPVIRLAML 312
           ++  S  NG  N  ++        +N  L   K           F  R           L
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFL 421

Query: 313 ------MTHYREP-IDFTVQRLTEAEILLS----KWPQTSTSKGIIDPAVLSALYNDLNT 361
                  +H   P  D   + L +  +  +    + P   T  G           +DL  
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----------SDLRV 470

Query: 362 VSA-IQALHKLARESTKNHDLLPI-------FNASAHIL 392
           +S  I    ++     +    LP+       F A+ HIL
Sbjct: 471 LSGSI--SERIVDCIIR----LPVKWETTTQFKAT-HIL 502



 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 17/117 (14%), Positives = 26/117 (22%), Gaps = 40/117 (34%)

Query: 77  DKIIERARQEHPSIPIND-AISII---TSKNTQQF----VKDTTRLACLAPTHQPRATN- 127
           D I +   + + S    D  I +       + +       +         P      T  
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496

Query: 128 ---HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179
              HI                      + F        G  + R     K GT  RV
Sbjct: 497 KATHI----------------------LDFGPGGASGLGVLTHR----NKDGTGVRV 527



 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 64/465 (13%), Positives = 121/465 (26%), Gaps = 196/465 (42%)

Query: 45  RPMI--------VFDVLYRL------LRYYYGEKCVTYVRNITDIDDKIIERARQEHPSI 90
           RP+         V  V          L+    E+    +   T+        A  + P+ 
Sbjct: 7   RPLTLSHGSLEHVLLVPTASFFIASQLQ----EQFNKILPEPTE------GFAADDEPTT 56

Query: 91  PINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMI-------YLIQNIILHG 143
           P       +       +V        + P+   +    +  +        YL  N I   
Sbjct: 57  PAELVGKFL------GYVSSL-----VEPSKVGQFD-QVLNLCLTEFENCYLEGNDI--- 101

Query: 144 HAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203
           HA  A      DT             + + K    + + Y     A  +  +        
Sbjct: 102 HALAAKLLQENDT------------TLVKTK---ELIKNYIT---ARIMAKRPFDKKSN- 142

Query: 204 WESPWGRGRPGWHIECSAMSSHYLG---KVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260
                           SA+         ++  I GG              Q    D  E+
Sbjct: 143 ----------------SALFRAVGEGNAQLVAIFGG--------------QGNTDDYFEE 172

Query: 261 TANIW-IHNGFLNLEGRKMSKSNGNFI-TINELL--------ETKKFGGR-----SW--- 302
             +++  ++  +           G+ I    E L        + +K   +      W   
Sbjct: 173 LRDLYQTYHVLV-----------GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221

Query: 303 ----P-------APV----IRLAMLMTHYREPIDFTVQRLTEAEI--LLSKWPQTST--S 343
               P        P+    I +  L  HY   +   +   T  E+   L      +T  S
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQL-AHYV--VTAKLLGFTPGELRSYLK----GATGHS 274

Query: 344 KGIIDPAVLSA------LYNDLNTVSAIQAL-------H----------KLARESTKN-- 378
           +G++    ++        +   +   AI  L       +           +  +S +N  
Sbjct: 275 QGLVTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332

Query: 379 ---HDLLPIFNAS-----AHILGIEVCKEHL--NKNISIAIEKLV 413
                +L I N +      ++        HL   K + I+   LV
Sbjct: 333 GVPSPMLSISNLTQEQVQDYV---NKTNSHLPAGKQVEIS---LV 371



 Score = 35.3 bits (81), Expect = 0.028
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 20/59 (33%)

Query: 4   KIKIYNT-----LERKITEFQAIDPSNIRMYVCGP------TVYDFAHIGNARPMIVFD 51
           +I +Y+T     L R ++   +I    +   +  P      T +   HI      + F 
Sbjct: 456 QIPVYDTFDGSDL-RVLSG--SISERIVDCIIRLPVKWETTTQFKATHI------LDFG 505


>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
           coiled coil, riken structural genomics/proteomics
           initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
           SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
           1iyw_A
          Length = 862

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 12/145 (8%)

Query: 180 PEKYHKKNPADFILWKRSTPMEPGW--ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237
            E             KR   +   W   + W     GW  E   + + Y     D+   G
Sbjct: 432 LEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFY---PGDVLVTG 488

Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297
            D++F                     + +H   L+ +G+KMSKS GN I   E++E    
Sbjct: 489 YDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE---- 544

Query: 298 GGRSWPAPVIRLAMLMTHYREPIDF 322
               + A  +R A++          
Sbjct: 545 ---RYGADALRFALIYLATGGQDIR 566


>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
           tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
           HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
           b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
          Length = 917

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 36/276 (13%), Positives = 75/276 (27%), Gaps = 10/276 (3%)

Query: 68  YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127
            +  +  I        R + P I         +    +Q + D                 
Sbjct: 383 ALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIY 442

Query: 128 HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187
           ++ +                       +   I    + +       + G+ +  +   K+
Sbjct: 443 NMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKD 502

Query: 188 PADFILWKRSTPMEPGWESPWGRGR---PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
                     +P     +           G        +   L    D++  G D     
Sbjct: 503 LLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGW 562

Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
             + I  S     +     +  H   ++ EG+KMSKS GN I  +++++          A
Sbjct: 563 FNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK-------QKGA 615

Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340
            + RL +  T Y   +  + + L +      K   T
Sbjct: 616 DIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNT 651


>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
           structural genomics/proteomics initiative, RSGI; 2.50A
           {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1
           c.26.1.1 PDB: 1jzq_A* 1jzs_A*
          Length = 821

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 18/115 (15%), Positives = 31/115 (26%)

Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239
                +   A     +R   +   W           H               D    G+D
Sbjct: 494 YVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGID 553

Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294
                  +               N+  H   L+ +G+KMSKS GN +   +++  
Sbjct: 554 QTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK 608


>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
           synthetase, ATP-binding, cytoplasm, ligase,
           metal-binding, nucleotide-binding; HET: CIT; 1.40A
           {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A
           3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
           1pg2_A* 1qqt_A 1mea_A 1med_A
          Length = 560

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 26/201 (12%)

Query: 134 YLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193
            L           +  N++     S       SR        G  +P    K        
Sbjct: 213 MLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYF---GFEIPNAPGKYFYVWLDA 269

Query: 194 WKRSTPMEPGWESPWGRG---RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250
                          G        W  + +A   H++GK         D+++       A
Sbjct: 270 PIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK---------DIVYFLSLFWPA 320

Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310
                    +  +    +G++ + G KMSKS G FI  +  L         + A  +R  
Sbjct: 321 M--LEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-------FDADSLRYY 371

Query: 311 ML--MTHYREPIDFTVQRLTE 329
               ++   + ID  ++   +
Sbjct: 372 YTAKLSSRIDDIDLNLEDFVQ 392



 Score = 35.6 bits (81), Expect = 0.025
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 21/130 (16%)

Query: 33  PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPS 89
           P      H+G+    I  DV  R  R   G +    V  I   D     I+ +A+Q    
Sbjct: 27  PYANGSIHLGHMLEHIQADVWVRYQR-MRGHE----VNFICADDAHGTPIMLKAQQL--- 78

Query: 90  IPINDAISIITSKNTQQFVKDTTRLAC----LAPTHQPRATNHIPQMIYLIQNIILHGHA 145
                    +  + +Q+   D             TH      +      +   +  +G  
Sbjct: 79  ---GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE---NRQLSELIYSRLKENGFI 132

Query: 146 YEANNEIIFD 155
                  ++D
Sbjct: 133 KNRTISQLYD 142


>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
           structural genomics, unknown function; 1.50A
           {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
          Length = 298

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 33/249 (13%), Positives = 57/249 (22%), Gaps = 38/249 (15%)

Query: 40  HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99
           H G+    +   +  R        + +  VR I DID     R                 
Sbjct: 19  HFGSLIAALGSYLQAR----ARQGRWL--VR-IEDID---PPREVPGA------------ 56

Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159
                +  ++                +         +  +   G +Y          S  
Sbjct: 57  ----AETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG 112

Query: 160 PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW----GRGRPGW 215
             Y    R              + H        L       E      +      G   +
Sbjct: 113 GIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAY 172

Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF-LNLE 274
           ++    +  H+ G    + G          E  + Q             +IH    LN +
Sbjct: 173 NL-AVVVDDHFQGVTEIVRGAD------LIEPTVRQISLYQLFGWKVPDYIHLPLALNPQ 225

Query: 275 GRKMSKSNG 283
           G K+SK N 
Sbjct: 226 GAKLSKQNH 234


>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural
           genomics, protein structure initiative; 2.20A
           {Campylobacter jejuni}
          Length = 464

 Score = 36.3 bits (83), Expect = 0.013
 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 27/301 (8%)

Query: 40  HIGNARPMIVFDVLYRLLRYYYGEKCVT--YVRNITDIDDKIIERARQEHPSIPINDAIS 97
           HIG+AR  +  D L RL R + G K  T  YV +  +    +            +++ + 
Sbjct: 46  HIGHARGAVFGDTLTRLAR-HLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVE 104

Query: 98  IITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG--HAYEANNEIIFD 155
                   +++ D  + A      +  +  +IP +    ++ +L       E     I  
Sbjct: 105 YPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDS 164

Query: 156 TSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215
             S  +Y       ++  K    + E+       +  +W  S+      +    R     
Sbjct: 165 YVSERSYYDALNATLESLKEHKGIYEQ-------EGKIWLASSQKGDEKDRVIIREDGRG 217

Query: 216 HIECSAMSSHY----LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271
               + +  H      G    I+  G D    +     A             I +     
Sbjct: 218 TYLAADIVYHKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFLGFDSNNLEIILAQMVS 276

Query: 272 NLEG---RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328
            L+     KMSK  GNFI ++++++  + G        +R   L       ++F +  L 
Sbjct: 277 LLKDGEPYKMSKRAGNFILMSDVVD--EIGSD-----ALRYIFLSKKCDTHLEFDISDLQ 329

Query: 329 E 329
           +
Sbjct: 330 K 330


>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
           genomics, PSI, MCSG, protein structure initiative; 1.91A
           {Methanocaldococcus jannaschii DSM2661}
          Length = 357

 Score = 31.9 bits (72), Expect = 0.30
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 4/96 (4%)

Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404
           G I    +  + + +N    IQ              L    N   +++       +    
Sbjct: 150 GYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNR 209

Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440
             +        + + +K  +  S   IR+ + S  F
Sbjct: 210 EGLKFN----PKFVFVKRLEGISGTKIREAIFSGKF 241


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.9 bits (71), Expect = 0.31
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 8/35 (22%)

Query: 366 QALHKLARESTKNHDLLPIF-NASAHILGIEVCKE 399
           QAL KL + S K      ++ + SA  L I+   E
Sbjct: 20  QALKKL-QASLK------LYADDSAPALAIKATME 47



 Score = 27.3 bits (59), Expect = 8.3
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 24/53 (45%)

Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311
           EK A          L  +K+  S          L  K +   S PA  I+  M
Sbjct: 18  EKQA----------L--KKLQAS----------L--KLYADDSAPALAIKATM 46


>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
           HET: SAH; 1.80A {Arabidopsis thaliana}
          Length = 235

 Score = 30.9 bits (69), Expect = 0.71
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 15/86 (17%)

Query: 166 SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIEC-SAMSS 224
            ++  D+   G  +P       P +   +   T  E GWE  W      W     + +  
Sbjct: 4   EQQNSDQSNGGNVIP------TPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIV 57

Query: 225 HYL-------GKVFDI-HGGGLDLIF 242
           H +       G+      GGG D++ 
Sbjct: 58  HLVDTSSLPLGRALVPGCGGGHDVVA 83


>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
           initiative, RSGI, structural genomics, ligase; 2.30A
           {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
          Length = 592

 Score = 30.3 bits (67), Expect = 0.88
 Identities = 21/171 (12%), Positives = 53/171 (30%), Gaps = 2/171 (1%)

Query: 40  HIGNARPMIVFDVLYRLLRYY-YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI 98
           H+G+ R + + D + R+L Y       + Y+ +      + +   R    +    +    
Sbjct: 119 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 178

Query: 99  ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158
              +   +  +D           +        ++   +  I+L   A        +D   
Sbjct: 179 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV 238

Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFI-LWKRSTPMEPGWESPW 208
             +    +        +  + P  +  +       L   ++P+ PG E P+
Sbjct: 239 WESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPF 289


>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
          Length = 98

 Score = 29.7 bits (66), Expect = 1.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYV---RNITDIDDKIIERARQEHP 88
          ++P + +D L R LRYYY +  +T V   R     D   I +A Q HP
Sbjct: 51 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHP 98


>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural
           genomics consortium, SGC, WD repeat, acetylation,
           ATP-binding; 1.90A {Homo sapiens}
          Length = 304

 Score = 29.1 bits (65), Expect = 1.9
 Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 8/185 (4%)

Query: 271 LNLEGRK-MSKSNGNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTV---Q 325
           LN    +    +  + I + ++L          P    +++     +  E I F      
Sbjct: 67  LNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPALDIL 126

Query: 326 RLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385
           RL+     +++              +++ L       + + AL               + 
Sbjct: 127 RLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMM 186

Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444
           +    ++      K   NKNI IA+  L     +     K  + +   + L     ILE 
Sbjct: 187 SQRESLMSHAIELKSGSNKNIHIALATLALNYSVCF--HKDHNIEGKAQCLSLISTILEV 244

Query: 445 YKNPD 449
            ++ +
Sbjct: 245 VQDLE 249


>3c9h_A ABC transporter, substrate binding protein; structural genomics,
           MCSG, PSI-2, protein structure initiative; HET: CIT;
           1.90A {Agrobacterium tumefaciens str}
          Length = 355

 Score = 28.7 bits (62), Expect = 2.7
 Identities = 9/150 (6%), Positives = 32/150 (21%), Gaps = 4/150 (2%)

Query: 73  TDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQM 132
             +   +IE  ++ +P I ++           + + +          T     ++ +   
Sbjct: 44  EPLATPMIEGFQKANPDIAVH----YEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQ 99

Query: 133 IYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFI 192
           + L  +          +       +      + +               +      A+F+
Sbjct: 100 VKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFV 159

Query: 193 LWKRSTPMEPGWESPWGRGRPGWHIECSAM 222
            +      E                     
Sbjct: 160 DYLERHAKEVHGRIATYDIERSGVGFLFMS 189


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.2 bits (62), Expect = 3.6
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 28/70 (40%)

Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266
           PWG  R  W +E         G+ F + G                  C +       I  
Sbjct: 830 PWGSARTRWEMEA-------FGE-FSLEG------------------CVEMAWIMGFISY 863

Query: 267 HNGFLNLEGR 276
           HNG  NL+GR
Sbjct: 864 HNG--NLKGR 871


>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
           splicing, endocytosis, lipid-binding, golgi apparatus,
           adaptor, membrane, transport; HET: IHP; 2.59A {Homo
           sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 1w63_B
          Length = 591

 Score = 27.8 bits (61), Expect = 5.7
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 331 EILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD 380
           E++LS+ P  S    +I+P +L  L   + +++++   HK      +   
Sbjct: 539 EVVLSEKPLISEETDLIEPTLLDELICHIGSLASV--YHKPPNAFVEGSH 586


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,212,325
Number of extensions: 202474
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 47
Length of query: 461
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 365
Effective length of database: 3,365,806
Effective search space: 1228519190
Effective search space used: 1228519190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)