RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 Score = 422 bits (1087), Expect = e-119 Identities = 177/482 (36%), Positives = 254/482 (52%), Gaps = 48/482 (9%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 +KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ + Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 + YVRNITDIDDKII+RA + ++ + + + KD L L P +PR Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIF-DTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183 AT+HI ++I L + +I GHAY A+N + D + P YG SR+ +D+ + G RV Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173 Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233 Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303 HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L+ + Sbjct: 234 HHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-------YD 285 Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354 A +R ++ HYR ++++ + L +A L + + + A Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345 Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI--------EVCK 398 + +D NT A L +ARE + + + +LG+ Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405 Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 + + IE L+Q+RL K K +++AD R +L G +LED T W+ Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ------GTTWR 459 Query: 459 QK 460 +K Sbjct: 460 RK 461 >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 Score = 364 bits (935), Expect = e-101 Identities = 120/409 (29%), Positives = 192/409 (46%), Gaps = 34/409 (8%) Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64 ++++++ +R++ MYVCG T YD H+G+A + FD+++RL Sbjct: 21 LRLFDSADRQVRPVTPGP--TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHT- 77 Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124 V YV+N+TD+DD + ERA ++ + + TQ F +D L L P Sbjct: 78 -VQYVQNVTDVDDPLFERAERDGIDWRT------LGDRETQLFREDMAALRVLPPHDYVA 130 Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179 AT+ I +++ +++ ++ G AY + + F + +G S D Sbjct: 131 ATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAER 190 Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236 P++ K + D +LW+ P EP W SP+GRGRPGWH+ECSA++ +G DI GG Sbjct: 191 GGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGG 250 Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296 G DLIFPHHE A + + A ++H G + +G KMSKS GN + +++L Sbjct: 251 GSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQG- 309 Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP-----AV 351 IRL + HYRE ++ + L EA L++W + D V Sbjct: 310 -----VDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATDVIARV 364 Query: 352 LSALYNDLNTVSAIQALHKLARE--STKNHD---LLPIFNASAHILGIE 395 L +DL+T A+ AL + S HD + +LG++ Sbjct: 365 RQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVATTVDALLGVD 413 >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 Score = 137 bits (346), Expect = 4e-33 Identities = 42/318 (13%), Positives = 94/318 (29%), Gaps = 28/318 (8%) Query: 22 DPSNIRMYV--CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID--D 77 + YV G T + H+GN R + ++ LR E V ++ D D Sbjct: 15 ERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE--VRHIHMWDDYDRFR 72 Query: 78 KI---IERARQEHPSIPINDAISI------ITSKNTQQFVKDTTRLACLAPTHQPRATNH 128 K+ + + +++ +PI++ ++F ++ +L Sbjct: 73 KVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYK 132 Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 + I+ + + P + R + + + Sbjct: 133 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQP-PLPENWWPAMVYCPEHRREAEIIEWDG 191 Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 + +K E + G + W ++ + D G D + + Sbjct: 192 GWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYD 248 Query: 249 IAQSCCADRIEKTANIWIHNGFL--NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306 + + K A + + F+ + KMS S GN I +++L + Sbjct: 249 TGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLY-------EVLEPGL 301 Query: 307 IRLAMLMTHYREPIDFTV 324 +R + I + Sbjct: 302 VRFIYARHRPNKEIKIDL 319 >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Score = 98.2 bits (244), Expect = 4e-21 Identities = 46/385 (11%), Positives = 97/385 (25%), Gaps = 61/385 (15%) Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR--------QEHPSIP 91 H G+ R I+ L L G + V + + D + A + P Sbjct: 159 HAGHLRSTIIGGFLANLYE-KLGWE-VIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDP 216 Query: 92 INDAISIITSKNTQ-----QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146 I+ + N + A + R + + + + + Sbjct: 217 IHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEK 276 Query: 147 EANN--------EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRST 198 + ++ S + + ID K E D + + Sbjct: 277 YIDTYARLNIKYDVYSGESQVSKES--MLKAIDLFKEKGLTHED-KGAVLIDLTKFNKKL 333 Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258 +S + + FD + H + + Sbjct: 334 GKAIVQKSDGTTLYLTRDVGAAMDRYEKYH--FDKMIYVIASQQDLHAAQFFEILKQMGF 391 Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP------------- 305 E A H F ++G MS G + ++ +LE K Sbjct: 392 E-WAKDLQHVNFGMVQG--MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEE 448 Query: 306 --------VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIID 348 + + + +F +R+ E + Q + + GI Sbjct: 449 VADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQ 508 Query: 349 PAVLSALYNDLNTVSAIQALHKLAR 373 ++A ++ L +A + L + Sbjct: 509 EKWINADFSLLKEPAAKLLIRLLGQ 533 >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Score = 77.4 bits (189), Expect = 6e-15 Identities = 52/316 (16%), Positives = 89/316 (28%), Gaps = 61/316 (19%) Query: 27 RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84 + YV P Y D H+G+A I D + R R V ++ + KI ++A Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYR-LRDYD-VFFLTGTDEHGLKIQKKAE 63 Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL--H 142 + + + +N ++F K L T R T+ Sbjct: 64 EL------GISPKELVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQKVFEECYKR 116 Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-------------------KY 183 G Y E + + + + E + Sbjct: 117 GDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLEL 176 Query: 184 HKKNPADF-------ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF----- 231 ++KNP + R R W I H + F Sbjct: 177 YEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFN 236 Query: 232 ---------------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 D+H G D++ H A + +G+ +EG+ Sbjct: 237 YISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLG--YELPKKVFAHGWWTVEGK 294 Query: 277 KMSKSNGNFITINELL 292 KMSK+ GN + E++ Sbjct: 295 KMSKTLGNVVDPYEVV 310 >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Score = 76.3 bits (187), Expect = 1e-14 Identities = 58/349 (16%), Positives = 101/349 (28%), Gaps = 79/349 (22%) Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99 HIG+A I D + R R G V Y+ K+ E A +E IP + + Sbjct: 28 HIGHAYEYIATDAIARFKRLD-GYD-VRYLTGTDVHGQKMAETAAKEG--IPAAE----L 79 Query: 100 TSKNTQQFVKDTTRLACLAP----THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155 +N+ F + +L T H + + + G Y + + Sbjct: 80 ARRNSDVFQRLQEKLNISFDRFIRTSDAD---HYEASKAIWKRMADAGDIYLDAYKGWYS 136 Query: 156 TSSIPNYGSFSRRKIDEQKM-----GTRVPEK------------------YHKKNPADFI 192 + + + G V ++++P +FI Sbjct: 137 IRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHP-EFI 195 Query: 193 LWKRSTPMEPGWES-------------PWGRGRPGW-----HIECSAMSSHYLGKVF--- 231 + S WG P ++ A++++ G F Sbjct: 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDT 255 Query: 232 -----------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280 D+H G D+I H A A +G+L G KMSK Sbjct: 256 ESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG--LPLPKRIFAHGWLLNRGEKMSK 313 Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 S GN + L++ FG V + + + + + Sbjct: 314 SIGNVVDPVNLVD--TFG----LDQVRYFLLREVPFGQDGSYNEDAIIG 356 >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Score = 61.3 bits (147), Expect = 5e-10 Identities = 42/316 (13%), Positives = 78/316 (24%), Gaps = 59/316 (18%) Query: 29 YVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86 YV P Y H+G+A +V D L R R G + ++ + + + A+ Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHR-LDGYR-TFFLTGTDEHGETVYRAAQAA 63 Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAP----THQPRATNHIPQMIYLIQNIILH 142 + + + +F + L T + R + ++ + Sbjct: 64 ------GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDI 117 Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS----- 197 + + + R E + + W + Sbjct: 118 YYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQEN 177 Query: 198 ------------------------TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 + P PWG P + + L Sbjct: 178 PDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237 Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIW----------------IHNGFLNLEGRK 277 + D ++ A W + L +GRK Sbjct: 238 LDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRK 297 Query: 278 MSKSNGNFITINELLE 293 MSK+ GN + LLE Sbjct: 298 MSKTLGNVVDPFALLE 313 >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Score = 58.5 bits (140), Expect = 3e-09 Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 11/191 (5%) Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206 E E + D++ Y + SR ++ G PEK + L + S E E Sbjct: 523 EWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEK 582 Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 G H Y D G DLI H I R E Sbjct: 583 KTGIPAEIIHEMKEEFEYWYP---LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIA 639 Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQ 325 NGF LEG+KMSKS GN + + +E + G A V+RL ++ + + D+ + Sbjct: 640 VNGFGTLEGQKMSKSKGNVLNFIDAIE--ENG-----ADVVRLYIMSLAEHDSDFDWRRK 692 Query: 326 RLTEAEILLSK 336 + + + + Sbjct: 693 EVGKLRKQIER 703 >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Score = 58.2 bits (140), Expect = 4e-09 Identities = 53/325 (16%), Positives = 100/325 (30%), Gaps = 88/325 (27%) Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPSIPINDAI 96 HIG+ ++ DVL R R GE+ V +T D+ K+ E A ++ + D Sbjct: 42 HIGHVYSTLIVDVLGRYHR-VKGEE----VFVMTGTDEHGQKVAEAAAKQG--VSPMD-- 92 Query: 97 SIITSKNTQQFVKDTTRLAC--------LAPTHQPRATNHIPQMIYLIQNIIL--HGHAY 146 T+ + +F + + PTH+ + I + + +I L + Y Sbjct: 93 --FTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHE-KLVQDIWKKLAAKGDIYLGKYEGWY 149 Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP-------ADFIL------ 193 ++E ++ + + V ++N + +L Sbjct: 150 SVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 Query: 194 -------------------------WKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYL 227 R W P G R ++ A+ ++Y Sbjct: 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYT 269 Query: 228 GKVF----------------------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 G + D+H G D++ H A A+ Sbjct: 270 GALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAE--LPLPERL 327 Query: 266 IHNGFLNLEGRKMSKSNGNFITINE 290 + +G+ + +K+SKS GN E Sbjct: 328 VSHGWWTKDHKKISKSLGNAFDPVE 352 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 51.5 bits (123), Expect = 4e-07 Identities = 61/387 (15%), Positives = 113/387 (29%), Gaps = 184/387 (47%) Query: 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIV---------FDVLYRLLR------YYYGEKC 65 P +R Y+ G T G+++ ++ ++ + +R ++ G +C Sbjct: 258 FTPGELRSYLKGAT-------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310 Query: 66 -VTYVRNITDIDDKIIERARQEH----PSIPINDAISI--ITSKNTQQFVKDTTRLACLA 118 Y T + I+E + E+ PS P+ +SI +T + Q +V T Sbjct: 311 YEAYPN--TSLPPSILEDS-LENNEGVPS-PM---LSISNLTQEQVQDYVNKTNS----- 358 Query: 119 PTHQPRATNHIPQMIYLI---QNII-------LHG-----HAYEANNEIIFDTSSIPNYG 163 H P + I L+ +N++ L+G +A + + D S IP Sbjct: 359 --HLPA-GKQV--EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQSRIP--- 408 Query: 164 SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 FS RK + ++ P + ++P +H Sbjct: 409 -FSERK----------LKFSNRFLP---V----ASP---------------FH------- 428 Query: 224 SHYLGKVF-----DIHGGGL-----DLIFP-HHENEIAQSCCADRIEKTANIWIHNGFLN 272 SH L D+ + D+ P + T + Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD---------------TFD--------- 464 Query: 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 G + +G+ R+ + P+ Sbjct: 465 --GSDLRVLSGSIS----------------E----RIVDCIIR--LPVK----------- 489 Query: 333 LLSKWPQTSTSKG--IID--PAVLSAL 355 W T+ K I+D P S L Sbjct: 490 ----WETTTQFKATHILDFGPGGASGL 512 Score = 46.5 bits (110), Expect = 1e-05 Identities = 75/519 (14%), Positives = 131/519 (25%), Gaps = 237/519 (45%) Query: 11 LERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVR 70 L +TEF+ Y+ G ++ A L++ Y + R Sbjct: 84 LNLCLTEFE-------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKR 135 Query: 71 NITDI-DDKIIERARQEHPSI-------------------------P-INDAISIIT--- 100 + + + + + + D I Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195 Query: 101 ---SKNTQQFVKDTTR----LACLA-PTHQPRATNHI-------PQMIYLIQNIILH--- 142 + T K T+ L L P++ P +++ P +I +IQ + H Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIPISCP-LIGVIQ--LAHYVV 251 Query: 143 --------------------GHA------------------YEANN---EIIFDTSSIPN 161 GH+ + + ++F Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF------- 304 Query: 162 YGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG-----WESPWGRGRPGWH 216 F +G R E Y P +T + P E+ G P Sbjct: 305 ---F---------IGVRCYEAY----P--------NTSLPPSILEDSLEN--NEGVP--- 335 Query: 217 IECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 S M S I + + + + KT N L G+ Sbjct: 336 ---SPMLS--------ISNLTQEQVQDY-------------VNKT------NSHLP-AGK 364 Query: 277 KMSKS--NG--NF-IT--------INELLETKK-----------FGGRSWPAPVIRLAML 312 ++ S NG N ++ +N L K F R L Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFL 421 Query: 313 ------MTHYREP-IDFTVQRLTEAEILLS----KWPQTSTSKGIIDPAVLSALYNDLNT 361 +H P D + L + + + + P T G +DL Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----------SDLRV 470 Query: 362 VSA-IQALHKLARESTKNHDLLPI-------FNASAHIL 392 +S I ++ + LP+ F A+ HIL Sbjct: 471 LSGSI--SERIVDCIIR----LPVKWETTTQFKAT-HIL 502 Score = 41.9 bits (98), Expect = 3e-04 Identities = 17/117 (14%), Positives = 26/117 (22%), Gaps = 40/117 (34%) Query: 77 DKIIERARQEHPSIPIND-AISII---TSKNTQQF----VKDTTRLACLAPTHQPRATN- 127 D I + + + S D I + + + + P T Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496 Query: 128 ---HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGT--RV 179 HI + F G + R K GT RV Sbjct: 497 KATHI----------------------LDFGPGGASGLGVLTHR----NKDGTGVRV 527 Score = 41.1 bits (96), Expect = 6e-04 Identities = 64/465 (13%), Positives = 121/465 (26%), Gaps = 196/465 (42%) Query: 45 RPMI--------VFDVLYRL------LRYYYGEKCVTYVRNITDIDDKIIERARQEHPSI 90 RP+ V V L+ E+ + T+ A + P+ Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQ----EQFNKILPEPTE------GFAADDEPTT 56 Query: 91 PINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMI-------YLIQNIILHG 143 P + +V + P+ + + + YL N I Sbjct: 57 PAELVGKFL------GYVSSL-----VEPSKVGQFD-QVLNLCLTEFENCYLEGNDI--- 101 Query: 144 HAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPG 203 HA A DT + + K + + Y A + + Sbjct: 102 HALAAKLLQENDT------------TLVKTK---ELIKNYIT---ARIMAKRPFDKKSN- 142 Query: 204 WESPWGRGRPGWHIECSAMSSHYLG---KVFDIHGGGLDLIFPHHENEIAQSCCADRIEK 260 SA+ ++ I GG Q D E+ Sbjct: 143 ----------------SALFRAVGEGNAQLVAIFGG--------------QGNTDDYFEE 172 Query: 261 TANIW-IHNGFLNLEGRKMSKSNGNFI-TINELL--------ETKKFGGR-----SW--- 302 +++ ++ + G+ I E L + +K + W Sbjct: 173 LRDLYQTYHVLV-----------GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221 Query: 303 ----P-------APV----IRLAMLMTHYREPIDFTVQRLTEAEI--LLSKWPQTST--S 343 P P+ I + L HY + + T E+ L +T S Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQL-AHYV--VTAKLLGFTPGELRSYLK----GATGHS 274 Query: 344 KGIIDPAVLSA------LYNDLNTVSAIQAL-------H----------KLARESTKN-- 378 +G++ ++ + + AI L + + +S +N Sbjct: 275 QGLVTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332 Query: 379 ---HDLLPIFNAS-----AHILGIEVCKEHL--NKNISIAIEKLV 413 +L I N + ++ HL K + I+ LV Sbjct: 333 GVPSPMLSISNLTQEQVQDYV---NKTNSHLPAGKQVEIS---LV 371 Score = 35.3 bits (81), Expect = 0.028 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 20/59 (33%) Query: 4 KIKIYNT-----LERKITEFQAIDPSNIRMYVCGP------TVYDFAHIGNARPMIVFD 51 +I +Y+T L R ++ +I + + P T + HI + F Sbjct: 456 QIPVYDTFDGSDL-RVLSG--SISERIVDCIIRLPVKWETTTQFKATHI------LDFG 505 >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Score = 46.8 bits (110), Expect = 9e-06 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 12/145 (8%) Query: 180 PEKYHKKNPADFILWKRSTPMEPGW--ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 E KR + W + W GW E + + Y D+ G Sbjct: 432 LEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFY---PGDVLVTG 488 Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297 D++F + +H L+ +G+KMSKS GN I E++E Sbjct: 489 YDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE---- 544 Query: 298 GGRSWPAPVIRLAMLMTHYREPIDF 322 + A +R A++ Sbjct: 545 ---RYGADALRFALIYLATGGQDIR 566 >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Score = 45.8 bits (107), Expect = 2e-05 Identities = 36/276 (13%), Positives = 75/276 (27%), Gaps = 10/276 (3%) Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127 + + I R + P I + +Q + D Sbjct: 383 ALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIY 442 Query: 128 HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187 ++ + + I + + + G+ + + K+ Sbjct: 443 NMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKD 502 Query: 188 PADFILWKRSTPMEPGWESPWGRGR---PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244 +P + G + L D++ G D Sbjct: 503 LLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGW 562 Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304 + I S + + H ++ EG+KMSKS GN I +++++ A Sbjct: 563 FNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK-------QKGA 615 Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340 + RL + T Y + + + L + K T Sbjct: 616 DIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNT 651 >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Score = 45.7 bits (107), Expect = 2e-05 Identities = 18/115 (15%), Positives = 31/115 (26%) Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 + A +R + W H D G+D Sbjct: 494 YVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGID 553 Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 + N+ H L+ +G+KMSKS GN + +++ Sbjct: 554 QTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK 608 >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Score = 44.1 bits (103), Expect = 7e-05 Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 26/201 (12%) Query: 134 YLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193 L + N++ S SR G +P K Sbjct: 213 MLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYF---GFEIPNAPGKYFYVWLDA 269 Query: 194 WKRSTPMEPGWESPWGRG---RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250 G W + +A H++GK D+++ A Sbjct: 270 PIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK---------DIVYFLSLFWPA 320 Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310 + + +G++ + G KMSKS G FI + L + A +R Sbjct: 321 M--LEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-------FDADSLRYY 371 Query: 311 ML--MTHYREPIDFTVQRLTE 329 ++ + ID ++ + Sbjct: 372 YTAKLSSRIDDIDLNLEDFVQ 392 Score = 35.6 bits (81), Expect = 0.025 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 21/130 (16%) Query: 33 PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPS 89 P H+G+ I DV R R G + V I D I+ +A+Q Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQR-MRGHE----VNFICADDAHGTPIMLKAQQL--- 78 Query: 90 IPINDAISIITSKNTQQFVKDTTRLAC----LAPTHQPRATNHIPQMIYLIQNIILHGHA 145 + + +Q+ D TH + + + +G Sbjct: 79 ---GITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE---NRQLSELIYSRLKENGFI 132 Query: 146 YEANNEIIFD 155 ++D Sbjct: 133 KNRTISQLYD 142 >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* Length = 298 Score = 38.5 bits (89), Expect = 0.004 Identities = 33/249 (13%), Positives = 57/249 (22%), Gaps = 38/249 (15%) Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99 H G+ + + R + + VR I DID R Sbjct: 19 HFGSLIAALGSYLQAR----ARQGRWL--VR-IEDID---PPREVPGA------------ 56 Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159 + ++ + + + G +Y S Sbjct: 57 ----AETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG 112 Query: 160 PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW----GRGRPGW 215 Y R + H L E + G + Sbjct: 113 GIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAY 172 Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF-LNLE 274 ++ + H+ G + G E + Q +IH LN + Sbjct: 173 NL-AVVVDDHFQGVTEIVRGAD------LIEPTVRQISLYQLFGWKVPDYIHLPLALNPQ 225 Query: 275 GRKMSKSNG 283 G K+SK N Sbjct: 226 GAKLSKQNH 234 >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Score = 36.3 bits (83), Expect = 0.013 Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 27/301 (8%) Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVT--YVRNITDIDDKIIERARQEHPSIPINDAIS 97 HIG+AR + D L RL R + G K T YV + + + +++ + Sbjct: 46 HIGHARGAVFGDTLTRLAR-HLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVE 104 Query: 98 IITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHG--HAYEANNEIIFD 155 +++ D + A + + +IP + ++ +L E I Sbjct: 105 YPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDS 164 Query: 156 TSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215 S +Y ++ K + E+ + +W S+ + R Sbjct: 165 YVSERSYYDALNATLESLKEHKGIYEQ-------EGKIWLASSQKGDEKDRVIIREDGRG 217 Query: 216 HIECSAMSSHY----LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 + + H G I+ G D + A I + Sbjct: 218 TYLAADIVYHKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFLGFDSNNLEIILAQMVS 276 Query: 272 NLEG---RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 L+ KMSK GNFI ++++++ + G +R L ++F + L Sbjct: 277 LLKDGEPYKMSKRAGNFILMSDVVD--EIGSD-----ALRYIFLSKKCDTHLEFDISDLQ 329 Query: 329 E 329 + Sbjct: 330 K 330 >3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661} Length = 357 Score = 31.9 bits (72), Expect = 0.30 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 4/96 (4%) Query: 345 GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKN 404 G I + + + +N IQ L N +++ + Sbjct: 150 GYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNR 209 Query: 405 ISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGF 440 + + + +K + S IR+ + S F Sbjct: 210 EGLKFN----PKFVFVKRLEGISGTKIREAIFSGKF 241 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.9 bits (71), Expect = 0.31 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 8/35 (22%) Query: 366 QALHKLARESTKNHDLLPIF-NASAHILGIEVCKE 399 QAL KL + S K ++ + SA L I+ E Sbjct: 20 QALKKL-QASLK------LYADDSAPALAIKATME 47 Score = 27.3 bits (59), Expect = 8.3 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 24/53 (45%) Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 EK A L +K+ S L K + S PA I+ M Sbjct: 18 EKQA----------L--KKLQAS----------L--KLYADDSAPALAIKATM 46 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 Score = 30.9 bits (69), Expect = 0.71 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 15/86 (17%) Query: 166 SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIEC-SAMSS 224 ++ D+ G +P P + + T E GWE W W + + Sbjct: 4 EQQNSDQSNGGNVIP------TPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIV 57 Query: 225 HYL-------GKVFDI-HGGGLDLIF 242 H + G+ GGG D++ Sbjct: 58 HLVDTSSLPLGRALVPGCGGGHDVVA 83 >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Score = 30.3 bits (67), Expect = 0.88 Identities = 21/171 (12%), Positives = 53/171 (30%), Gaps = 2/171 (1%) Query: 40 HIGNARPMIVFDVLYRLLRYY-YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISI 98 H+G+ R + + D + R+L Y + Y+ + + + R + + Sbjct: 119 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 178 Query: 99 ITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 + + +D + ++ + I+L A +D Sbjct: 179 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV 238 Query: 159 IPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFI-LWKRSTPMEPGWESPW 208 + + + + P + + L ++P+ PG E P+ Sbjct: 239 WESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPF 289 >1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 98 Score = 29.7 bits (66), Expect = 1.5 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Query: 44 ARPMIVFDVLYRLLRYYYGEKCVTYV---RNITDIDDKIIERARQEHP 88 ++P + +D L R LRYYY + +T V R D I +A Q HP Sbjct: 51 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHP 98 >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Length = 304 Score = 29.1 bits (65), Expect = 1.9 Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 8/185 (4%) Query: 271 LNLEGRK-MSKSNGNFITINELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTV---Q 325 LN + + + I + ++L P +++ + E I F Sbjct: 67 LNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPALDIL 126 Query: 326 RLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIF 385 RL+ +++ +++ L + + AL + Sbjct: 127 RLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMM 186 Query: 386 NASAHILG-IEVCKEHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444 + ++ K NKNI IA+ L + K + + + L ILE Sbjct: 187 SQRESLMSHAIELKSGSNKNIHIALATLALNYSVCF--HKDHNIEGKAQCLSLISTILEV 244 Query: 445 YKNPD 449 ++ + Sbjct: 245 VQDLE 249 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Length = 355 Score = 28.7 bits (62), Expect = 2.7 Identities = 9/150 (6%), Positives = 32/150 (21%), Gaps = 4/150 (2%) Query: 73 TDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQM 132 + +IE ++ +P I ++ + + + T ++ + Sbjct: 44 EPLATPMIEGFQKANPDIAVH----YEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQ 99 Query: 133 IYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFI 192 + L + + + + + + A+F+ Sbjct: 100 VKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFV 159 Query: 193 LWKRSTPMEPGWESPWGRGRPGWHIECSAM 222 + E Sbjct: 160 DYLERHAKEVHGRIATYDIERSGVGFLFMS 189 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 28.2 bits (62), Expect = 3.6 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 28/70 (40%) Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266 PWG R W +E G+ F + G C + I Sbjct: 830 PWGSARTRWEMEA-------FGE-FSLEG------------------CVEMAWIMGFISY 863 Query: 267 HNGFLNLEGR 276 HNG NL+GR Sbjct: 864 HNG--NLKGR 871 >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 1w63_B Length = 591 Score = 27.8 bits (61), Expect = 5.7 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 331 EILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD 380 E++LS+ P S +I+P +L L + +++++ HK + Sbjct: 539 EVVLSEKPLISEETDLIEPTLLDELICHIGSLASV--YHKPPNAFVEGSH 586 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.136 0.415 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,212,325 Number of extensions: 202474 Number of successful extensions: 782 Number of sequences better than 10.0: 1 Number of HSP's gapped: 753 Number of HSP's successfully gapped: 47 Length of query: 461 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 365 Effective length of database: 3,365,806 Effective search space: 1228519190 Effective search space used: 1228519190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.5 bits)