BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/461 (100%), Positives = 461/461 (100%)
Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60
MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY
Sbjct: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60
Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120
YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT
Sbjct: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120
Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180
HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP
Sbjct: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180
Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240
EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL
Sbjct: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240
Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300
IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR
Sbjct: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300
Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360
SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN
Sbjct: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360
Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420
TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL
Sbjct: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420
Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461
KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP
Sbjct: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQKP 461
>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 586
Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329
KMSK G+FIT+ +++ + G S +R ML E +DF ++ E
Sbjct: 399 KMSKRAGDFITLRHVVD--EVGSDS-----VRFMMLWRKNSELLDFDFCKVKE 444
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 254 CADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELL 292
CA R I +GF ++ G KMSKS GN + E++
Sbjct: 609 CATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEII 648
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 172 EQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESP--WGRGRPGWHIECSAMSSHYLGK 229
+ M +V + N +D + KR + W S W GW + + + ++Y
Sbjct: 484 DNDMTVKVRKMIKDGNISDLL--KRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTS 541
Query: 230 VFDIHGGGLDLIFPHHENEIA------QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNG 283
V G D++F + + IE +++H + G+KMSKS G
Sbjct: 542 VL---VTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKG 598
Query: 284 NFI 286
N +
Sbjct: 599 NVV 601
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 27 RMYVCGPTVYDFA--HIGNARPMIVFDVLYRLLR 58
++Y+ Y A HIG+A MI+ DVL R R
Sbjct: 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHR 39
Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLE 293
+GF+ +G K+SKS GN I E++E
Sbjct: 293 HGFILHKGEKISKSLGNVIDPIEVIE 318
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,589
Number of Sequences: 1233
Number of extensions: 12506
Number of successful extensions: 38
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 11
length of query: 461
length of database: 328,796
effective HSP length: 77
effective length of query: 384
effective length of database: 233,855
effective search space: 89800320
effective search space used: 89800320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)