HHsearch alignment for GI: 254780575 and conserved domain: TIGR00688
>TIGR00688 rarD RarD protein; InterPro: IPR004626 This uncharacterised protein is predicted to have many membrane-spanning domains..
Probab=99.68 E-value=9.8e-14 Score=91.77 Aligned_cols=253 Identities=28% Similarity=0.510 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC---CCCCHHHHHHHHHHHH
Q ss_conf 9999999999999999999999638988999999999999999999999710000112210---3500112334346668
Q gi|254780575|r 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTL---KNPKAVGMLVFSATIL 101 (316)
Q Consensus 25 ~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 101 (316)
T Consensus 2 ~g~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~~~k~p~~~~~~~~~~~l~ 81 (259)
T TIGR00688 2 KGVLVSLLALFLWGYFPLYWKLLKPLPALDILGHRVIWSFPFVLLLLTLLRQWAALWELLKTLQKRPGGILSLLLCGLLI 81 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 51689999999987899999998522502567788999999999999998778889999852201512789999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q ss_conf 875334666653345899999997699999999742023564379999999986565566236-8852057799999865
Q gi|254780575|r 102 AVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SGIPLLSLAIAVTWSA 180 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 180 (316)
T Consensus 82 g~~~~~~~W~~n~g~~l~~~~gy~~~p~~~~~~g~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 161 (259)
T TIGR00688 82 GGNWWLFLWAVNNGFLLEASLGYLLNPLVSVLLGRLFLKEGLSRLQWLAVILATLGVLVNLWLFGSLPWVALGLAFSFGL 161 (259)
T ss_pred HHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 32343103422665025656657888999999878887410247899999999999999988615734999999998888
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 32100011234442257889999998777753100134565678725667886533442115799999998625869999
Q gi|254780575|r 181 YCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVG 260 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s 260 (316)
T Consensus 162 y~~~~k~~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~w~~l~~~g~~~~~~l~~~~~~~~~lp~~~~g 241 (259)
T TIGR00688 162 YGLVRKKLKLPDLAGLLLETLWLLPVALGYLLATGDATPAGTGPGPLGLWLLLVLAGLVTGLPLLLFAAAANRLPLNLLG 241 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87666554115778899999998899999998740000103676512689999999998889999999875421467878
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780575|r 261 IMEYTAPLLMIVSSVFI 277 (316)
Q Consensus 261 ~~~~l~Pv~a~i~~~~~ 277 (316)
T Consensus 242 ~~~y~~~~~~~l~~~~~ 258 (259)
T TIGR00688 242 LLGYIGPTLMLLLGLFL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88887899999999971