HHsearch alignment for GI: 254780575 and conserved domain: TIGR00688

>TIGR00688 rarD RarD protein; InterPro: IPR004626 This uncharacterised protein is predicted to have many membrane-spanning domains..
Probab=99.68  E-value=9.8e-14  Score=91.77  Aligned_cols=253  Identities=28%  Similarity=0.510  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC---CCCCHHHHHHHHHHHH
Q ss_conf             9999999999999999999999638988999999999999999999999710000112210---3500112334346668
Q gi|254780575|r   25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTL---KNPKAVGMLVFSATIL  101 (316)
Q Consensus        25 ~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  101 (316)
T Consensus         2 ~g~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~~~k~p~~~~~~~~~~~l~   81 (259)
T TIGR00688         2 KGVLVSLLALFLWGYFPLYWKLLKPLPALDILGHRVIWSFPFVLLLLTLLRQWAALWELLKTLQKRPGGILSLLLCGLLI   81 (259)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             51689999999987899999998522502567788999999999999998778889999852201512789999999986


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q ss_conf             875334666653345899999997699999999742023564379999999986565566236-8852057799999865
Q gi|254780575|r  102 AVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SGIPLLSLAIAVTWSA  180 (316)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~  180 (316)
T Consensus        82 g~~~~~~~W~~n~g~~l~~~~gy~~~p~~~~~~g~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~  161 (259)
T TIGR00688        82 GGNWWLFLWAVNNGFLLEASLGYLLNPLVSVLLGRLFLKEGLSRLQWLAVILATLGVLVNLWLFGSLPWVALGLAFSFGL  161 (259)
T ss_pred             HHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             32343103422665025656657888999999878887410247899999999999999988615734999999998888


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             32100011234442257889999998777753100134565678725667886533442115799999998625869999
Q gi|254780575|r  181 YCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVG  260 (316)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s  260 (316)
T Consensus       162 y~~~~k~~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~w~~l~~~g~~~~~~l~~~~~~~~~lp~~~~g  241 (259)
T TIGR00688       162 YGLVRKKLKLPDLAGLLLETLWLLPVALGYLLATGDATPAGTGPGPLGLWLLLVLAGLVTGLPLLLFAAAANRLPLNLLG  241 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87666554115778899999998899999998740000103676512689999999998889999999875421467878


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780575|r  261 IMEYTAPLLMIVSSVFI  277 (316)
Q Consensus       261 ~~~~l~Pv~a~i~~~~~  277 (316)
T Consensus       242 ~~~y~~~~~~~l~~~~~  258 (259)
T TIGR00688       242 LLGYIGPTLMLLLGLFL  258 (259)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             88887899999999971