HHsearch alignment for GI: 254780575 and conserved domain: TIGR00950
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=98.36 E-value=3.4e-05 Score=45.21 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHH
Q ss_conf 1452779999999999999999999999-6389889999---99999999999999999710000112210350011233
Q gi|254780575|r 19 ASLPTMMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVI---SHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGML 94 (316)
Q Consensus 19 ~~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~---~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
T Consensus 133 ~~~~~~~G~~~~~~s~~~~A~g~v~~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~--~~~g~~~ 210 (275)
T TIGR00950 133 NLSINPAGLLLGLLSGISFALGTVLAKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATS--LQWGALL 210 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHH--HHHHHHH
T ss_conf 66522999999999999999999998752067987426789999999999999999998456501111024--6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4346668875334666653345899999997699999999742023564379999999986565
Q gi|254780575|r 95 VFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSL 158 (316)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (316)
T Consensus 211 yLg~~~t~l~y~l~~~Gl~~V~~~~a~~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~ 274 (275)
T TIGR00950 211 YLGLIGTLLAYFLWNKGLTLVDPSAASILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999998764347046577664668999999999973046798999999999982