HHsearch alignment for GI: 254780575 and conserved domain: TIGR03340
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.73 E-value=1.9e-14 Score=95.70 Aligned_cols=270 Identities=15% Similarity=0.072 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999638988-9999999999999999999997100001122103500112334346668875
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFLEQVSV-LEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVH 104 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l~~~~p-~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
T Consensus 2 a~~lvL~aA~lHA~WN~l~K~~~d~~~~~~~~~--~~~~~i~~~p~~~~~~~~~~~---p~p~~~~w~~i~~S~~~h~~Y 76 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWA--LLAHSVLLTPYGLWYLAQVGW---SRLPATFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999999954888108999999--999999999999999986368---998678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH------HHHHHHHHH
Q ss_conf 33466665334589999999769999999974202356437999999998656556623688520------577999998
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL------LSLAIAVTW 178 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~ 178 (316)
T Consensus 77 ~~~L~~aY~~gdls~vYPiaRgsPllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~~~~~~~~~~~~l~~al~t~~~i 156 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGT 156 (281)
T ss_pred HHHHHHHHHCCCCCEECHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999998358841111064157699999999997476889899999999999999840120356604799999999999
Q ss_pred HHHHHHHCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6532100011--2344-422578899999987777531001345656787256678865334421157999999986258
Q gi|254780575|r 179 SAYCFARKTI--PVGS-SEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAK 255 (316)
Q Consensus 179 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~ 255 (316)
T Consensus 157 a~Ytl~D~~a~~gv~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~s~~sY~lvl~A~~~~p 236 (281)
T TIGR03340 157 AIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAMTRLP 236 (281)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998655047666569999999999999999999999657515677899889999999999999999999981084
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 699999999999999999999978889989999999999999999
Q gi|254780575|r 256 LSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300 (316)
Q Consensus 256 a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~ 300 (316)
T Consensus 237 va~VaalRetSIlfa~l~g~~~lkE~~~~~Rl~~~~li~~Gvvll 281 (281)
T TIGR03340 237 VATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 265676998899999999999977965098999999999979969