RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62] (316 letters) >gnl|CDD|185328 PRK15430, PRK15430, putative chloramphenical resistance permease RarD; Provisional. Length = 296 Score = 122 bits (307), Expect = 1e-28 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 6/286 (2%) Query: 23 TMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFF--AIVYFSGGLSL 80 T G L AY +WGI P Y + + V E+++HRV+WS FF ++ S Sbjct: 6 TRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSF---FFMVVLMSICRQWSY 62 Query: 81 LKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLK 140 LK ++ P+ + ML SA ++ +W FI+A+ S YF+ P++++ LG +FL Sbjct: 63 LKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG 122 Query: 141 ERLNHLQIIAALLIILSLLIMTLHSG-IPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIE 199 ER +Q +A +L I +L+ G +P+++L +A +++ Y RK I V + G IE Sbjct: 123 ERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIE 182 Query: 200 MCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV 259 L A Y+ S H + L LI G++ + F+ R +LST+ Sbjct: 183 TMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTL 242 Query: 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTV 305 G +Y P LM + +V + + + F + +A+ ++++ + Sbjct: 243 GFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 >gnl|CDD|129771 TIGR00688, rarD, rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains. Length = 256 Score = 115 bits (290), Expect = 1e-26 Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 7/257 (2%) Query: 26 GTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYF---SGGLSLLK 82 G + A L+G Y++ L+ + +++ HR++WS P + ++ F + + LK Sbjct: 3 GIIVSLLASFLFGYMYYYSKLLKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK 62 Query: 83 DTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKER 142 K P + L+ ++ +W FI+A+ S Y + P++ V LG VFLKER Sbjct: 63 RIQKRPLIL-SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER 121 Query: 143 LNHLQIIAALLIILSLLI-MTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMC 201 ++ Q IA ++ L ++ + L +P +L +A +++AY RK + GF +E Sbjct: 122 ISRFQFIAVIIATLGVISNIVLKGSLPWEALVLAFSFTAYGLIRKALKNTDLAGFCLETL 181 Query: 202 VLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGI 261 L A++Y++ F+ + P L L+ GL+ F R L+ +G+ Sbjct: 182 SLMPVAIYYLLQTDFATVQQ--TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGL 239 Query: 262 MEYTAPLLMIVSSVFIL 278 ++Y P +M++ F++ Sbjct: 240 LQYIGPTIMMLCVSFLI 256 >gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional. Length = 292 Score = 36.1 bits (84), Expect = 0.012 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 8/77 (10%) Query: 90 AVGMLVFSATILAVHWGFFIYALL---TRQGFLTSFSYFVTPVISVFLGSVFLKERLNHL 146 A+G L +I+A Y L R TS++Y V PV++V LG+ E L+ + Sbjct: 214 ALGYLAVFGSIIA----ISAYMYLLRNVRPALATSYAY-VNPVVAVLLGTGLGGETLSPI 268 Query: 147 QIIAALLIILSLLIMTL 163 + +A +I+ +++++TL Sbjct: 269 EWLALGVIVFAVVLVTL 285 >gnl|CDD|162128 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter. Length = 260 Score = 35.4 bits (82), Expect = 0.018 Identities = 48/291 (16%), Positives = 100/291 (34%), Gaps = 48/291 (16%) Query: 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDT 84 GT V L G PLY ++ FA++ L LL+ Sbjct: 1 WGTTGVVIGQYLEGQVPLYFAVFRRL-----------------IFALLLL---LPLLRRR 40 Query: 85 LKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLN 144 + + +L+ A + V + + A+ + ++ P+ L + KER Sbjct: 41 PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPR 100 Query: 145 HLQIIAALLIILSLLIMTLHSGIP------LLSLAIAVTWSAYCFARKTI--------PV 190 L ++AA+L + +++ + LL L ++++ K + Sbjct: 101 KLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQ 160 Query: 191 GSSEGFFIEMCVLAIPALFYV---VWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIF 247 + + +L A F G +LG I + Y L + Sbjct: 161 FTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGT---ALAYFL--------W 209 Query: 248 SYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMV 298 + G+ S I+ PL+ ++ + IL + + + I +++ A++ Sbjct: 210 NKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 >gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional. Length = 779 Score = 31.4 bits (72), Expect = 0.29 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Query: 268 LLMIVSSVFILK-----QPIDTVRTIVFGIVVIAMVVYLLPTVI 306 L M+V + + ID +R+I FG+++ VY L V+ Sbjct: 34 LAMVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYFLSVVV 77 >gnl|CDD|163382 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown. Length = 723 Score = 30.8 bits (70), Expect = 0.42 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 90 AVGMLVFSATILAVHW-----GFFIYALLTRQG---FLTSFSYFVTPVISVFLGSVFLKE 141 V L+ A W G I + TR FL F+ IS + + Sbjct: 369 PVLSLLLYAPFYLSFWQGPASGRGIGLVETRTTIHQFLIIHGLFLFLFISFLITGLTGDS 428 Query: 142 RLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGF-FIEM 200 R + I I LL ++L GIPLL+L + + + + R+ PVG + Sbjct: 429 RRKKARWILLAPFIALLLGLSL--GIPLLALLLPLLVTTWLLRRRDAPVGFETLLALGGL 486 Query: 201 CVLAIPALFYVV 212 +L + + YV Sbjct: 487 GLLLLVEIIYVR 498 >gnl|CDD|179267 PRK01265, PRK01265, heat shock protein HtpX; Provisional. Length = 324 Score = 30.5 bits (69), Expect = 0.52 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 200 MCVLAIPALFY-----VVWNGFSGGEHFFLGNIPDTLFLIGYGLLN-SFVFCIFSYGIKR 253 M + IP L Y + W G GG GN LFLIG L+ SFVF + I R Sbjct: 160 MAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLLVLSINR 219 >gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed. Length = 394 Score = 29.9 bits (67), Expect = 0.88 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 12/118 (10%) Query: 85 LKNPKAVGMLVFSATILAVHWGFFIY---ALLTRQGF------LTSFSYFVTPVISVFLG 135 L+ P + ++ A + FF Y + GF L S+ + + L Sbjct: 213 LQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLS 272 Query: 136 SVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSS 193 S LK + A L++ +S L++TL +++ +A+ W +PVG S Sbjct: 273 SFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG---LTFALVPVGWS 327 >gnl|CDD|149708 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor. Length = 346 Score = 26.9 bits (60), Expect = 7.7 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 26 GTLFVFCAYILWGITPLYTQFLEQVSVLEVIS--HRVLWSLPGVFFA--IVYFSGGLSLL 81 G + + ILW I + S +++ + G +A I+Y++ +S Sbjct: 197 GFILIIVDQILWAINLFHYNNTRPRSASDILPAFIYLFRLALGTLYAAIIIYYT--ISKK 254 Query: 82 KDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISV 132 K K + + + + ++ + FFI L ++ +S + ++ V Sbjct: 255 KLCYSYKKIIPLALLTILLILLPVVFFI--LDISNWWVREWSELFSWLLYV 303 >gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed. Length = 286 Score = 26.8 bits (60), Expect = 8.4 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 111 ALLTRQGFLTSFSYFVTPVISV 132 A R+ F+T+ S FV PV+ + Sbjct: 235 AYAAREAFITAASSFVFPVVQI 256 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.329 0.143 0.434 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,205,290 Number of extensions: 349742 Number of successful extensions: 1145 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1116 Number of HSP's successfully gapped: 124 Length of query: 316 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 223 Effective length of database: 3,984,929 Effective search space: 888639167 Effective search space used: 888639167 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 57 (25.7 bits)