RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780575|ref|YP_003064988.1| hypothetical protein
CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)



>gnl|CDD|185328 PRK15430, PRK15430, putative chloramphenical resistance permease
           RarD; Provisional.
          Length = 296

 Score =  122 bits (307), Expect = 1e-28
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 23  TMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFF--AIVYFSGGLSL 80
           T  G L    AY +WGI P Y + +  V   E+++HRV+WS    FF   ++      S 
Sbjct: 6   TRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSF---FFMVVLMSICRQWSY 62

Query: 81  LKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLK 140
           LK  ++ P+ + ML  SA ++  +W  FI+A+        S  YF+ P++++ LG +FL 
Sbjct: 63  LKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG 122

Query: 141 ERLNHLQIIAALLIILSLLIMTLHSG-IPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIE 199
           ER   +Q +A +L I  +L+     G +P+++L +A +++ Y   RK I V +  G  IE
Sbjct: 123 ERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIE 182

Query: 200 MCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV 259
              L   A  Y+     S   H     +   L LI  G++ +     F+    R +LST+
Sbjct: 183 TMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTL 242

Query: 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTV 305
           G  +Y  P LM + +V    +     + + F  + +A+ ++++  +
Sbjct: 243 GFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288


>gnl|CDD|129771 TIGR00688, rarD, rarD protein.  This uncharacterized protein is
           predicted to have many membrane-spanning domains.
          Length = 256

 Score =  115 bits (290), Expect = 1e-26
 Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 7/257 (2%)

Query: 26  GTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYF---SGGLSLLK 82
           G +    A  L+G    Y++ L+ +   +++ HR++WS P +  ++  F   +  +  LK
Sbjct: 3   GIIVSLLASFLFGYMYYYSKLLKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK 62

Query: 83  DTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKER 142
              K P  +  L+    ++  +W  FI+A+        S  Y + P++ V LG VFLKER
Sbjct: 63  RIQKRPLIL-SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER 121

Query: 143 LNHLQIIAALLIILSLLI-MTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMC 201
           ++  Q IA ++  L ++  + L   +P  +L +A +++AY   RK +      GF +E  
Sbjct: 122 ISRFQFIAVIIATLGVISNIVLKGSLPWEALVLAFSFTAYGLIRKALKNTDLAGFCLETL 181

Query: 202 VLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGI 261
            L   A++Y++   F+  +       P  L L+  GL+       F     R  L+ +G+
Sbjct: 182 SLMPVAIYYLLQTDFATVQQ--TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGL 239

Query: 262 MEYTAPLLMIVSSVFIL 278
           ++Y  P +M++   F++
Sbjct: 240 LQYIGPTIMMLCVSFLI 256


>gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner
           membrane protein; Provisional.
          Length = 292

 Score = 36.1 bits (84), Expect = 0.012
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 8/77 (10%)

Query: 90  AVGMLVFSATILAVHWGFFIYALL---TRQGFLTSFSYFVTPVISVFLGSVFLKERLNHL 146
           A+G L    +I+A       Y  L    R    TS++Y V PV++V LG+    E L+ +
Sbjct: 214 ALGYLAVFGSIIA----ISAYMYLLRNVRPALATSYAY-VNPVVAVLLGTGLGGETLSPI 268

Query: 147 QIIAALLIILSLLIMTL 163
           + +A  +I+ +++++TL
Sbjct: 269 EWLALGVIVFAVVLVTL 285


>gnl|CDD|162128 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter. 
          Length = 260

 Score = 35.4 bits (82), Expect = 0.018
 Identities = 48/291 (16%), Positives = 100/291 (34%), Gaps = 48/291 (16%)

Query: 25  MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDT 84
            GT  V     L G  PLY     ++                  FA++     L LL+  
Sbjct: 1   WGTTGVVIGQYLEGQVPLYFAVFRRL-----------------IFALLLL---LPLLRRR 40

Query: 85  LKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLN 144
               + + +L+  A  + V +  +  A+        +   ++ P+    L  +  KER  
Sbjct: 41  PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPR 100

Query: 145 HLQIIAALLIILSLLIMTLHSGIP------LLSLAIAVTWSAYCFARKTI--------PV 190
            L ++AA+L +   +++     +       LL L   ++++      K +          
Sbjct: 101 KLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQ 160

Query: 191 GSSEGFFIEMCVLAIPALFYV---VWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIF 247
            +     +   +L   A F            G   +LG I      + Y L        +
Sbjct: 161 FTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGT---ALAYFL--------W 209

Query: 248 SYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMV 298
           + G+     S   I+    PL+ ++  + IL + +   + I   +++ A++
Sbjct: 210 NKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260


>gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein
           ArcB; Provisional.
          Length = 779

 Score = 31.4 bits (72), Expect = 0.29
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 268 LLMIVSSVFILK-----QPIDTVRTIVFGIVVIAMVVYLLPTVI 306
           L M+V     +      + ID +R+I FG+++    VY L  V+
Sbjct: 34  LAMVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYFLSVVV 77


>gnl|CDD|163382 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain.  Members of this
           highly hydrophobic probable integral membrane family
           belong to two classes. In one, a single copy of the
           region modeled by This model represents essentially the
           full length of a strongly hydrophobic protein of about
           700 to 900 residues (variable because of long inserts in
           some). The domain architecture of the other class
           consists of an additional N-terminal region, two copies
           of the region represented by this model, and three to
           four repeats of TPR, or tetratricopeptide repeat. The
           unusual species range includes several Archaea, several
           Chloroflexi, and Clostridium phytofermentans. An unusual
           motif YYYxG is present, and we suggest the name
           Chlor_Arch_YYY protein. The function is unknown.
          Length = 723

 Score = 30.8 bits (70), Expect = 0.42
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 90  AVGMLVFSATILAVHW-----GFFIYALLTRQG---FLTSFSYFVTPVISVFLGSVFLKE 141
            V  L+  A      W     G  I  + TR     FL     F+   IS  +  +    
Sbjct: 369 PVLSLLLYAPFYLSFWQGPASGRGIGLVETRTTIHQFLIIHGLFLFLFISFLITGLTGDS 428

Query: 142 RLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGF-FIEM 200
           R    + I     I  LL ++L  GIPLL+L + +  + +   R+  PVG         +
Sbjct: 429 RRKKARWILLAPFIALLLGLSL--GIPLLALLLPLLVTTWLLRRRDAPVGFETLLALGGL 486

Query: 201 CVLAIPALFYVV 212
            +L +  + YV 
Sbjct: 487 GLLLLVEIIYVR 498


>gnl|CDD|179267 PRK01265, PRK01265, heat shock protein HtpX; Provisional.
          Length = 324

 Score = 30.5 bits (69), Expect = 0.52
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 200 MCVLAIPALFY-----VVWNGFSGGEHFFLGNIPDTLFLIGYGLLN-SFVFCIFSYGIKR 253
           M +  IP L Y     + W G  GG     GN    LFLIG  L+  SFVF +    I R
Sbjct: 160 MAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLLVLSINR 219


>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
          Length = 394

 Score = 29.9 bits (67), Expect = 0.88
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 85  LKNPKAVGMLVFSATILAVHWGFFIY---ALLTRQGF------LTSFSYFVTPVISVFLG 135
           L+ P  +  ++      A  + FF Y     +   GF      L   S+ +   +   L 
Sbjct: 213 LQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLS 272

Query: 136 SVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSS 193
           S  LK  +      A L++ +S L++TL     +++  +A+ W         +PVG S
Sbjct: 273 SFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG---LTFALVPVGWS 327


>gnl|CDD|149708 pfam08733, PalH, PalH/RIM21.  PalH (also known as RIM21) is a
           transmembrane protein required for proteolytic cleavage
           of Rim101/PacC transcription factors which are activated
           by C terminal proteolytic processing. Rim101/PacC family
           proteins play a key role in pH-dependent responses and
           PalH has been implicated as a pH sensor.
          Length = 346

 Score = 26.9 bits (60), Expect = 7.7
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 26  GTLFVFCAYILWGITPLYTQFLEQVSVLEVIS--HRVLWSLPGVFFA--IVYFSGGLSLL 81
           G + +    ILW I   +       S  +++     +     G  +A  I+Y++  +S  
Sbjct: 197 GFILIIVDQILWAINLFHYNNTRPRSASDILPAFIYLFRLALGTLYAAIIIYYT--ISKK 254

Query: 82  KDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISV 132
           K      K + + + +  ++ +   FFI  L     ++  +S   + ++ V
Sbjct: 255 KLCYSYKKIIPLALLTILLILLPVVFFI--LDISNWWVREWSELFSWLLYV 303


>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
          Length = 286

 Score = 26.8 bits (60), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 111 ALLTRQGFLTSFSYFVTPVISV 132
           A   R+ F+T+ S FV PV+ +
Sbjct: 235 AYAAREAFITAASSFVFPVVQI 256


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.143    0.434 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,205,290
Number of extensions: 349742
Number of successful extensions: 1145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 124
Length of query: 316
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 223
Effective length of database: 3,984,929
Effective search space: 888639167
Effective search space used: 888639167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)