RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780575|ref|YP_003064988.1| hypothetical protein
CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)



>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
           domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
          Length = 121

 Score = 26.2 bits (57), Expect = 3.5
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 265 TAPLLMIVSSVFILKQPIDTVR---------TIVFGIVVIAMVVYLLPTVINSGKNKTK 314
             P  M+V   F + +P              +IV G + +   + + P V      + K
Sbjct: 6   NKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIK 64


>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
           5741]}
          Length = 230

 Score = 26.1 bits (57), Expect = 4.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 226 NIPDTLFLIGYGL 238
            +P   +LIG+GL
Sbjct: 174 PMPKGSWLIGFGL 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.434 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,139,245
Number of extensions: 51589
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 12
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)