RPSBLAST alignment for GI: 254780576 and conserved domain: cd03248
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
Score = 216 bits (552), Expect = 1e-56
Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 2/217 (0%)
Query: 355 GHIVFNNVSFSYNH--HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
G + F NV+F+Y + + +SF + P + TAL+G SG GKSTV LL Y +GG
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
+ +DG+ I + + L + ++ Q+ +LF +L+ NI YG + S + + A + A
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
SFI +L +GYDT VGE+G +LSGG+KQRV+IARA+++NP ++I DEATS+LD +E+ +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 533 QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTV 569
Q AL + RT LVIAHRLST+ AD I+V D G +
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226