RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780576|ref|YP_003064989.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
(597 letters)
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 535 bits (1380), Expect = e-152
Identities = 250/497 (50%), Positives = 343/497 (69%), Gaps = 1/497 (0%)
Query: 96 IRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIV 155
+RD L+ +GQ A L + H++ LS RFH+ + G LS AI G + IE I+R I+
Sbjct: 1 LRDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWIL 60
Query: 156 VHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHE 215
+++PT++E ++ LW YG + VTVILY+ FT+I S+WR + MNN +
Sbjct: 61 FNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSD 120
Query: 216 CHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIG 275
+AK D+L+NFET++YF +E++E R + + Y+++AI V SL LNFGQ IFS G
Sbjct: 121 ANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTG 180
Query: 276 MVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNIL 335
+ + M +S+ V G+ TVGD V +N LL QL+IPLN LG YR+ RQ+ ++E++ ++L
Sbjct: 181 LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240
Query: 336 NEKIEIQNAVNSKDLKI-KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGV 394
+ + E+ +A ++ L + G + F NVSF+Y+ I GISF I K A++GESG
Sbjct: 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300
Query: 395 GKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYG 454
GKST+ +LL+R YD+ G ITIDGQDI+ +T++SLR+ IGI+PQDT+LFNDT+ YNI YG
Sbjct: 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360
Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514
P+A+ +E+ AA E AQ+ FI LP GYDT VGERGLKLSGGEKQRV+IAR ILKNPPI
Sbjct: 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420
Query: 515 IIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
+I DEATS+LD TE+ IQ AL +S RTTLVIAHRLSTI DAD IIV D G +VE G+
Sbjct: 421 LILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480
Query: 575 HENLISQGGIYTSMWKK 591
HE L++ GG+Y MW++
Sbjct: 481 HEELLAAGGLYAEMWRR 497
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 497 bits (1281), Expect = e-141
Identities = 235/584 (40%), Positives = 366/584 (62%), Gaps = 6/584 (1%)
Query: 10 RTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69
R L+ + PY+WP L++R++ +F +I + + + +P L KW+ + L TA T
Sbjct: 196 RKLRTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDEL----TAPDTF 251
Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
Y + + + + + N++R FL++ + Q T + ++ H++ LS R+H+
Sbjct: 252 QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL 311
Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVI 189
N + G++ + G S+ ++ +V + PT+L+ ++M + + + + I+ + ++
Sbjct: 312 NRRTGEVLRVMDRGTSSVTLL-EYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMML 370
Query: 190 LYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISK 249
LY + TI + WR +KMNN +E A+ D+L+NFET++Y+N+E +E+ R + I K
Sbjct: 371 LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430
Query: 250 YKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAI 309
Y++ SL +LN Q I +G++ ++ ++ V TVGDFV T L QL +
Sbjct: 431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYM 490
Query: 310 PLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHH 369
PLN GT YR +++FI++E + ++L E+ E+ + + LK+ G I F+NV+F+Y+
Sbjct: 491 PLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG 550
Query: 370 NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
+ ISF + P K AL+G SG GKST+ +LL+R +D+ G ITIDGQDI+ +T+ SL
Sbjct: 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610
Query: 430 RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
R +IG++PQDT+LFNDT+ YNI Y P+AS++E+ AA + AQ+ I++ P GY+T VGE
Sbjct: 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670
Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
RGLKLSGGEKQRV+IAR ILK P II+ DEATS+LD TER IQ ALA L NRTT+V+A
Sbjct: 671 RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVA 730
Query: 550 HRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTSMWKKQ 592
HRLSTI +AD I+V G +VE G HE L+ + GG Y MW+ Q
Sbjct: 731 HRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 478 bits (1231), Expect = e-135
Identities = 227/581 (39%), Positives = 355/581 (61%), Gaps = 7/581 (1%)
Query: 12 LKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSY 71
L+ L Y WP +R L+ R+ A+ ++ +K + + +PF+ K + + L +
Sbjct: 13 LRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGL----NDADGNPA 68
Query: 72 LTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINY 131
+ I L+ YG R+ + + N +R+F++ ++ Q V H+ L F ++
Sbjct: 69 VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR 128
Query: 132 KVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILY 191
G L+ I G R+I ++ +V ++IPT+ E A+ L+Y +G + I TV Y
Sbjct: 129 GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAY 188
Query: 192 VWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYK 251
FTI+ + WR K MNN + + +D+LIN+E ++ FN+E++E +R + + Y+
Sbjct: 189 AAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYE 248
Query: 252 ESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPL 311
+ + ++SL +LNFGQ IFS+ + M++ S+ + G+ TVGD V +N+LL QL++PL
Sbjct: 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPL 308
Query: 312 NILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNC 371
N LG++YR+ RQ+ ++ L +L +IQ A + +++ G I F++V FSY
Sbjct: 309 NFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRK 366
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ KG+SF I +K A++G +G GKST+ +LL R +D G I+ IDGQDIK+++ ESLRQ
Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL-IDGQDIKEVSLESLRQ 425
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
+IG++PQD++LFNDT+ YNI YGNP+ASD+E+ A + A L I +LP+GY T+VGERG
Sbjct: 426 SIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG 485
Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHR 551
L LSGGEKQRVS+ARA LK+ PI++ DEATS+LD TER I + + RT ++I HR
Sbjct: 486 LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545
Query: 552 LSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
L + D D IIV D GTV E G+H L++ +Y +W Q
Sbjct: 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 376 bits (966), Expect = e-104
Identities = 195/584 (33%), Positives = 320/584 (54%), Gaps = 20/584 (3%)
Query: 9 LRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKT 68
L L++L Y+ ++ A+ ++ S + L +P L+ + ++L+
Sbjct: 1 LSLLRRLLKYLKYK-------LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGE--- 50
Query: 69 TSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFH 128
++ L+ + ++ + ++ +L +GQ L + + +L F
Sbjct: 51 -------LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFF 103
Query: 129 INYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTV 188
K G L S ++N + ++ ++ ++V + +IL S+ L+ + I+ + +
Sbjct: 104 DKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL-ALILLLIL 162
Query: 189 ILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYIS 248
L + + LS+++ L E +A++ ++L I+ F +E E+ R E+
Sbjct: 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANE 222
Query: 249 KYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLA 308
+ + + + + L L+ S+G V+ + + V G TVG L +L
Sbjct: 223 ELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLL 282
Query: 309 IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNH 368
P+ LG + +++ E L +L+E+ E+++ + K G I F NVSFSY
Sbjct: 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPG 340
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
+ K ISF I P +K A++G SG GKST+ KLL RLYD G I IDG DI+ I+ +S
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400
Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
LR+ IGI+ QD +LF+ T+R NI G P+A+D+E+ A+++A FI LP+GYDT+VG
Sbjct: 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460
Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
ERG+ LSGG++QR++IARA+L+NPPI+I DEATS+LD TE IQ AL L K RTTL+I
Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520
Query: 549 AHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
AHRLSTI +AD IIV D G +VE G+HE L+++GG+Y +++ Q
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 360 bits (926), Expect = e-100
Identities = 141/236 (59%), Positives = 183/236 (77%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NV+F+Y+ + K +SF I KK A++G SG GKST+ +LL+R YD+ G I I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
DGQDI+++T +SLR+ IG++PQDT+LFNDT+ YNI YG P+A+D+E+ A + AQ+ I
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
M+ P+GYDT+VGERGLKLSGGEKQRV+IARAILKNPPI++ DEATS+LD TER IQ AL
Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180
Query: 537 ATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
+SK RTT+VIAHRLSTI +AD IIV G +VE G+HE L+++GG+Y MWK Q
Sbjct: 181 RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 343 bits (882), Expect = 7e-95
Identities = 180/592 (30%), Positives = 293/592 (49%), Gaps = 32/592 (5%)
Query: 10 RTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69
L P ++ R +V + + ++A L P + V + ++ + T
Sbjct: 140 FGLSWFIPLLFKYRRLLFEVLLASLLLQLLA-----LATPLFSQIVIDKVL-PDASRSTL 193
Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
+ L IG+++ + + +R +L +G+ L + H+ +L +
Sbjct: 194 TVLAIGLLLAA-------LFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFL----WYSYGDIYVSIMA 185
VG++ S + R +E I + ++ I++ ++ FL YS+ + +
Sbjct: 247 KRSVGEIISRV----RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVL-- 300
Query: 186 VTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINF----ETIQYFNSEKFEIN 241
+ L V T+I L ++ L E A+ L+ ET++ +E +
Sbjct: 301 AAIPLNVLITLIFQP----LLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRS 356
Query: 242 RLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN 301
+ + ++K LN + L+ + V+ + + V GE T+G V N
Sbjct: 357 QWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFN 416
Query: 302 TLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNN 361
L P+ L ++ D +Q+ + +E L +IL+ E + L G I F N
Sbjct: 417 MLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFEN 476
Query: 362 VSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
VSF Y + + +S EI P +K A++G SG GKST+ KLL LY + G I +DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
+ I SLR+ +G + QD LF+ ++R NI GNP A+D+E+ A ++A FI LP
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
GYDT VGE G LSGG++QR+++ARA+L P I++ DEATS+LD TE I L +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
+ RT ++IAHRLSTI AD IIV DQG +VE GSHE L++QGG+Y ++++Q
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 334 bits (857), Expect = 6e-92
Identities = 174/590 (29%), Positives = 298/590 (50%), Gaps = 19/590 (3%)
Query: 7 PSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTAS 66
P+ LK+L + P +W ++ A ++ S + + IP+ L + +++ E ++
Sbjct: 130 PNHTLLKRLLGLLKPEWKW-----LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSA 184
Query: 67 KTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQR 126
++ L ++ ++N IR L G+ L + + +
Sbjct: 185 DALKRACTILLGLF-------LIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIA 237
Query: 127 FHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAF-LWYSYGDIYVSIMA 185
F K G+L S +++ + + + + + +++ + F S+ V+++
Sbjct: 238 FFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIV 297
Query: 186 VTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEK 245
V ++ V I + LSK+ + L + + L T++ F +E+ E+ R K
Sbjct: 298 VPIVALV--AKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNK 355
Query: 246 YISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLT 305
+ + + + A + G L+ ++ ++ + H V G T G
Sbjct: 356 KLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQV 415
Query: 306 QLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFS 365
QL L+ L + Y + + E + +++ K I ++ G I F +VSF+
Sbjct: 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQ-GVIEFEDVSFA 474
Query: 366 Y--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
Y + K +SF I P + AL+G SG GKST+A LL R YD G I +DG I
Sbjct: 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534
Query: 424 ITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGY 483
I + LR+ IG++ Q+ +LF+ ++R NI YG NA+D+E+ AA ++A FI P+GY
Sbjct: 535 INHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGY 594
Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR 543
+TVVGE+G +LSGG+KQR++IARA+L+NP ++I DEATS+LD +E +Q AL L + R
Sbjct: 595 NTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGR 654
Query: 544 TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS-QGGIYTSMWKKQ 592
T LVIAHRLST+ AD I+V D+G VVE G+H+ L+S G+Y + ++Q
Sbjct: 655 TVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 327 bits (840), Expect = 5e-90
Identities = 172/591 (29%), Positives = 288/591 (48%), Gaps = 25/591 (4%)
Query: 11 TLKKLWPYMWPANRWDLKVRIIGAMFSVIA-SKFVILGIPFLLKWVTESLIEQSTASKTT 69
+ +++ P + ++G++ + I + + + + V E+
Sbjct: 651 SFWRIFKLNKP----EWPYLLLGSLGAAIRGATYPLFAY--VFSQVLEAFYPPD--DDEL 702
Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
++ G +V+ I+N ++ + + G+ T L + + + +
Sbjct: 703 KREVRAWALIFLGLG---IVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFD 759
Query: 130 NYK-VGKLSSAISNGIRSIEMII--RIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAV 186
+ + G LSS ++ ++ + R+ +V + I +AF+ YG ++
Sbjct: 760 DPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI---YGWRLALVVLA 816
Query: 187 TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246
T L + + + G SK E + + N T+ +E+ + ++
Sbjct: 817 TFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEE 876
Query: 247 ISKYKESAI--SVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLL 304
+ K ++S+ + + LG F Q L+F + ++ + + GE T D + L
Sbjct: 877 LEKPRKSSFKRGLISGLG-FGFSQSLLFFV-YALSFWYGARLISNGEMTFEDVFRVFMAL 934
Query: 305 TQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLK-IKNGHIVFNNVS 363
+ A+ L + D ++ I + IL+ K I S G I F NVS
Sbjct: 935 SFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVS 994
Query: 364 FSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI 421
F+Y + +S I + AL+G SG GKSTV LL R YD G + IDG DI
Sbjct: 995 FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054
Query: 422 KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
K + + LR+ IG++ Q+ +LFN T+R NI YG+ S++E+ A ++A +FI LP
Sbjct: 1055 KDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ 1114
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
GYDT VGERG++LSGG+KQR++IARAIL+NP I++ DEATS+LD +ER +Q AL +
Sbjct: 1115 GYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174
Query: 542 NRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
RTT+VIAHRLSTI +AD I V G VVE G+H+ L+++ GIY + + Q
Sbjct: 1175 GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225
Score = 305 bits (784), Expect = 2e-83
Identities = 186/587 (31%), Positives = 299/587 (50%), Gaps = 36/587 (6%)
Query: 22 ANRWDLKVRIIGAMFSVIASKFVILGIPFLL---KWVTESLIEQSTASKTTSYLTIGIVI 78
A+R+D + I+G++ ++ LG+P + +T+ L + + + V
Sbjct: 22 ADRFDYLLMILGSIGAIAHG----LGLPLMSIIFGKLTDVLG---DNTNKIASSEVSKVA 74
Query: 79 LITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSS 138
L Y + V IS I+ ++ G+ T + + + + + + G+L +
Sbjct: 75 LYFVY--LGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVT 132
Query: 139 AISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIIT 198
+S+ I I+ I V + I + F + + YG +M + L +
Sbjct: 133 RLSDDIELIQDAIGEKVGNFIQLLATFIAGFV-IGFYYGWKLTLVMLSFIPLIAIAGGLL 191
Query: 199 SNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAI--- 255
+ + L++K + + + + + T+ FN EK EI R K + + I
Sbjct: 192 ARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG 251
Query: 256 -SVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGD--FVFINTL-----LTQL 307
LG+ F L+F+ + S + G GD VF + L L Q
Sbjct: 252 LFKGLGLGFTFF---LLFAS-YALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307
Query: 308 AIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY- 366
+ L+ +R + I E ++ I+ + IK G I F NV FSY
Sbjct: 308 SPHLSAFAK----ARAAAYRIFETIDR-KPSIDPYSKGGRVLSSIK-GEIEFRNVCFSYP 361
Query: 367 -NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT 425
I KG+S +I + AL+G SG GKST+ +LL R YD G + IDG+DI+ +
Sbjct: 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN 421
Query: 426 KESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485
+ LR IG++ Q+ +LF T+R NI YG P+A+ +E+ A + A FI+KLP+GYDT
Sbjct: 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481
Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545
+VGERG++LSGG+KQR++IARA+++NP I++ DEATS+LD +ER +Q AL SK RTT
Sbjct: 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541
Query: 546 LVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
+V+AHRLSTI +AD I V ++G +VE G+H+ LI+ GGIY+S+ + Q
Sbjct: 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ 588
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 308 bits (790), Expect = 3e-84
Identities = 122/234 (52%), Positives = 163/234 (69%), Gaps = 1/234 (0%)
Query: 357 IVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
+ F NV+F Y + + IS +I + AL+G SG GKST+ L+ R YD+ G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
IDG D++ T SLR+ IG++ QD LFNDT+ NI YG P A+ +E+ A A F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
IM+LP GYDTV+GERG+KLSGG++QR++IARA+LK+PPI+I DEATS+LD +ER +Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMW 589
L L KNRTT VIAHRLSTI +AD I+V + G +VE G+HE L++QGG+Y +
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 297 bits (763), Expect = 5e-81
Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)
Query: 357 IVFNNVSFSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
I F NVSF Y I KG+S I P K AL+G SG GKSTV LL R YD G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
+DG DI+ + LR IG++ Q+ +LF+ T+ NI YG P+A+D+E+ A + A +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
FIM LP+GYDT+VGERG +LSGG+KQR++IARA+L+NP I++ DEATS+LD +E+ +Q
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 535 ALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
AL K RTT+VIAHRLSTI +AD I V G VVE G+H+ L++Q G+Y + K Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 283 bits (725), Expect = 1e-76
Identities = 116/229 (50%), Positives = 162/229 (70%)
Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
G I F NV+FSY+ + K I+F I P + A++G +G GK+T+ LL R YD + G I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
IDG DI+ I+++SLR IG++ QDT LF+ T+ NI G PNA+D+E+ A + A
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
FIMKLPNGYDTV+GE G LS GE+Q ++IARA+L++P I+I DEATS++D TE+ IQ
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 535 ALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGG 583
AL L K RT+++IAHRLSTI +AD I+V D G ++E G+H+ L+++ G
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 262 bits (670), Expect = 3e-70
Identities = 160/568 (28%), Positives = 263/568 (46%), Gaps = 21/568 (3%)
Query: 31 IIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVN 90
+I A+ +V++ I+ LL + LIE L + ++ L V+
Sbjct: 3 VISALLAVLSG-IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIAL--------VLR 53
Query: 91 LISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMI 150
+R+ L +L V+ + KL F G ++ GI +E
Sbjct: 54 AFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPY 113
Query: 151 I-RIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKM 209
R + + I+ I +A ++++ I+ +T L F I+ S+K
Sbjct: 114 YARYLPQMFLSAIVPLLILIAIFFFNWAAAL--ILLITAPLIPLFMILVGLAAKDASEKQ 171
Query: 210 NNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVAT----SLGWLN 265
+ L D L ET++ F + R+ K ++++ +SV S L
Sbjct: 172 FSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLE 231
Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSF 325
F L SI +V I G+ T+ +F+ L + PL LG+ + +
Sbjct: 232 FFAYL--SIALVAVYIGFRLLGE-GDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGE 288
Query: 326 IEIEELLNILNEKIEIQNAVNSKDLKIKNG-HIVFNNVSFSYNHHNCIFKGISFEIAPSK 384
++L +L + + ++ + I N+SF Y ++ I +
Sbjct: 289 AAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQ 348
Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFN 444
TAL+G SG GKST+ LL G I ++G D++ ++ E+ R+ I + Q+ LF
Sbjct: 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408
Query: 445 DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
T+R NIL P+ASD+E+ AA++ A L F+ K P+G DTV+GE G LSGG+ QR+++
Sbjct: 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLAL 467
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF 564
ARA+L +++ DE T+ LD TE+ I AL L+K +T LVI HRL DAD I+V
Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527
Query: 565 DQGTVVESGSHENLISQGGIYTSMWKKQ 592
D G +VE G+HE L + G+Y ++ K+Q
Sbjct: 528 DNGRLVEQGTHEELSEKQGLYANLLKQQ 555
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 239 bits (611), Expect = 2e-63
Identities = 156/608 (25%), Positives = 271/608 (44%), Gaps = 54/608 (8%)
Query: 11 TLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTS 70
+ Y+ A + L + I+ + V+ I +L W + +T T+
Sbjct: 802 SWSVYKKYIKAAGGFLLVLLIL--LLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSF 859
Query: 71 YLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHIN 130
YL + Y + V + + +R FL+ + G A+ L+ ++++ + + F
Sbjct: 860 YLGV--------YALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT 911
Query: 131 YKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVIL 190
G++ + S I ++++ L+P LEF + + I+ V +
Sbjct: 912 TPTGRILNRFSKDIDTVDV--------LLPFTLEFFLQSLLN-------VLGILVVISYV 956
Query: 191 YVWFTIITS----------NWRVGLSKKMNNLLHECHAKVF----DTLINFETIQYFNSE 236
WF I + + S+++ L + ++ +TL TI+ F E
Sbjct: 957 TPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016
Query: 237 KFEINRLEKYISKYKESAISVATSLGWLNFGQGLI--FSIGMVITMIISSHAVYIGEQTV 294
+ I ++ I + + ++ WL L+ + + + + I V
Sbjct: 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLV 1076
Query: 295 GDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIE-IQNAVNSKDLKI- 352
G + QL L L + + + +E +L + E S+
Sbjct: 1077 G---LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSW 1133
Query: 353 -KNGHIVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
G I F ++S Y + + KGISF I P +K ++G +G GKS++ L+RL +
Sbjct: 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA 1193
Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVE 468
G I IDG DI KI LR + IIPQD +LF+ T+R+N+ +P SD E+ A+E
Sbjct: 1194 EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALE 1250
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
QLK + LP G D+ V E G S G++Q + +ARA+L+ I++ DEAT+S+D T
Sbjct: 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310
Query: 529 ERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTS 587
+ IQ + K+ T L IAHRL+T+ D+D ++V D G VVE S L+S +++S
Sbjct: 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSS 1370
Query: 588 MWKKQCES 595
+ K+ S
Sbjct: 1371 LLKEAALS 1378
Score = 160 bits (405), Expect = 1e-39
Identities = 126/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%)
Query: 28 KVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMR 87
+ ++ +F + +G L K LI + + + +L+
Sbjct: 201 RTFLLSGIFLFLRDLAGFVGPLLLKK-----LILFFSEKRLPLNNGYLLAVLL---FLAS 252
Query: 88 VVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSI 147
++ + H F+ +G L + +LS VG++ + +S + +
Sbjct: 253 LLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRL 312
Query: 148 EMIIRIIVVHLIPTI-LEFAISMAFLWYSYGDIYVSIMAVTVI---LYVWFTIITSNWRV 203
+HL+ + L+ +++ L+ G ++ +AV V+ L + + ++
Sbjct: 313 SDAA--CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQK 370
Query: 204 GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLE----KYISKYKESAISVAT 259
L K+ + + + + L + I+ + EK + ++E K + ++SA A
Sbjct: 371 RLMKRKDERI----KLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSAL 426
Query: 260 SLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN-TLLTQLAIPLNILGTIY 318
+ F + V+T ++ + +G F + L L PL +L ++
Sbjct: 427 NSFLNFF----SPVLVSVVTFVV--FVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVI 480
Query: 319 RDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHN--CIFKGI 376
Q+ + ++ L L + ++V + I N SFS++ + K I
Sbjct: 481 SQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDI 540
Query: 377 SFEIAPSKKTALIGESGVGKST-VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGI 435
+FEI + A++G G GKS+ ++ +L + + G + ++ ++
Sbjct: 541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV--------------AVNGSVAY 586
Query: 436 IPQDTILFNDTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGLKL 494
+PQ + N T+R NIL+G+P D+E V + LK + LP G T +GERG+ L
Sbjct: 587 VPQQPWIQNGTVRENILFGSP--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINL 644
Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLS 553
SGG+KQR+S+ARA+ ++ I + D+ S++D +HI + + L + +T +++ H+L
Sbjct: 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ 704
Query: 554 TITDADNIIVFDQGTVVESGSHENLISQGGIY 585
+ AD IIV G +VESG++E L+ GG +
Sbjct: 705 FLPHADQIIVLKDGKIVESGTYEELLKSGGDF 736
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 237 bits (606), Expect = 6e-63
Identities = 145/598 (24%), Positives = 273/598 (45%), Gaps = 50/598 (8%)
Query: 12 LKKLWPYMWP--ANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69
++ L PY+ +++ L + I+ A+ +++AS +G+ L W + + A
Sbjct: 1 MRALLPYLRLYKRHKFGLLLGIVLAILTLLAS----IGLLTLSGWF---ISASAIAGLAY 53
Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVE--IGQGATCTLYHQVVSHVYKLSQRF 127
+ + + +R YVE + AT V+S + R
Sbjct: 54 IFNVMLPSAGVRGLAILRTAAR---------YVERLVSHDATFR----VLSAL-----RV 95
Query: 128 HINYKVGKLSSAISNGIRSIEMIIRII-------------VVHLIPTILEFAISMAFLWY 174
+ K+ LS A+ RS +++ R++ + + ++ A+ L
Sbjct: 96 RLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGL-- 153
Query: 175 SYGDIYVSIMAVTVILYVWFTIITSNWRVG--LSKKMNNLLHECHAKVFDTLINFETIQY 232
S+ I ++++ ++L + I T +R G + ++ D + +
Sbjct: 154 SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLI 213
Query: 233 FNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQ 292
F +E LE + + ++ A G + LI + ++ ++ + V G
Sbjct: 214 FGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGAL 273
Query: 293 T-VGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLK 351
G + + + L + ++ Q L +IL++K E+ +
Sbjct: 274 AQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV--TFPDEQTA 331
Query: 352 IKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
+ NVSF+Y K + +A +K A++G SG GKST+ +LL +D +
Sbjct: 332 TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
G IT++G +I + +++LR+TI ++ Q LF+ TLR N+ NP+ASD+EL AA++
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
L+ + P+G +T +GE G +LSGGE++R+++ARA+L + P+ + DE T LD ITER
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
+ L ++ +T L++ HRL + D IIV D G ++E G+H L++ G Y +
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 233 bits (596), Expect = 8e-62
Identities = 99/237 (41%), Positives = 151/237 (63%), Gaps = 1/237 (0%)
Query: 357 IVFNNVSFSYNHHN-CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
I F +V F Y I IS I P + ++G SG GKST+ KL+ R Y + G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+DG D+ LR+ +G++ Q+ +LFN ++R NI +P S + + A ++A F
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
I +LP GYDT+VGE+G LSGG++QR++IARA++ NP I+IFDEATS+LD +E I
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
+ + RT ++IAHRLST+ +AD IIV ++G +VE GSH+ L+++ G+Y +++ Q
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 231 bits (591), Expect = 4e-61
Identities = 101/223 (45%), Positives = 136/223 (60%), Gaps = 6/223 (2%)
Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G I F NVS Y + + K ISF I P +K ++G +G GKS++ L+RL ++ G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPN--ASDQELCAAVEVAQ 471
I IDG DI KI LR I IIPQD +LF+ T+R N+ +P SD+EL A+E
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVG 117
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
LK F+ LP G DTVV E G LS G++Q + +ARA+L+ I++ DEAT+S+D T+
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
IQ + K+ T L IAHRL TI D+D I+V D+G VVE S
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 220 bits (563), Expect = 6e-58
Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
Query: 355 GHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G I F NVSFSY N +S I +K A+IG G GKST+ KLL LY G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
+ +DG DI+++ LR+ IG +PQD LF TLR NI G P A D+ + A E+A +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
F+ K PNG D +GERG LSGG++Q V++ARA+L +PPI++ DE TS++D+ +E ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
L L ++T ++I HR S + D IIV D G +V G
Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 216 bits (552), Expect = 1e-56
Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 2/217 (0%)
Query: 355 GHIVFNNVSFSYNH--HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
G + F NV+F+Y + + +SF + P + TAL+G SG GKSTV LL Y +GG
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
+ +DG+ I + + L + ++ Q+ +LF +L+ NI YG + S + + A + A
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
SFI +L +GYDT VGE+G +LSGG+KQRV+IARA+++NP ++I DEATS+LD +E+ +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 533 QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTV 569
Q AL + RT LVIAHRLST+ AD I+V D G +
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 214 bits (547), Expect = 6e-56
Identities = 95/212 (44%), Positives = 120/212 (56%), Gaps = 43/212 (20%)
Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
I F NVSFSY + K +S I P +K A++G SG GKST+ KLL RLYD G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
IDG D++ + ESLR+ I +PQD LF+ T+R NI
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
LSGG++QR++IARA+L++PPI+I DEATS+LD TE I A
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQG 567
L L+K +T +VIAHRLSTI DAD IIV D G
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 167 bits (425), Expect = 6e-42
Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 8/264 (3%)
Query: 320 DSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISF 378
+RQS+ + ELL L E L G + ++ + I KGISF
Sbjct: 304 AARQSYKRLNELLAELPAAAE------RMPLPAPQGALSVERLTAAPPGQKKPILKGISF 357
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
+ + +IG SG GKST+A+LL ++ G + +DG D+++ +E L + IG +PQ
Sbjct: 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417
Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
D LF+ T+ NI A +++ A +A + I++LP GYDT +GE G LSGG+
Sbjct: 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477
Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITD 557
+QR+++ARA+ +P +++ DE S+LD E + A+ ++ T +VIAHR S +
Sbjct: 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537
Query: 558 ADNIIVFDQGTVVESGSHENLISQ 581
D I+V G + G E ++++
Sbjct: 538 VDKILVLQDGRIAAFGPREEVLAK 561
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 165 bits (419), Expect = 3e-41
Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 20/223 (8%)
Query: 353 KNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
++G I N+S Y + K +SF++ +K ++G +G GKST+ L+R + +
Sbjct: 3 EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ 471
G I IDG DI I E LR ++ IIPQD LF+ T+R N+ + SD+E+ A+ V+
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALRVS- 120
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
E GL LS G++Q + +ARA+LK P +++ DEAT+S+D T+
Sbjct: 121 -----------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
IQ + N T L IAHRL TI D D I+V D G V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 162 bits (412), Expect = 2e-40
Identities = 92/236 (38%), Positives = 142/236 (60%), Gaps = 3/236 (1%)
Query: 355 GHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G I +++ Y N+ + K + I P +K + G +G GKS+++ +R+ DI G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
I IDG DI K+ +LR + II QD ILF+ ++R+N L +D L A+E+AQLK
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQLK 136
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
+ + LP G D VV E G S G++Q +ARA ++ I+I DEAT+S+D+ TE +Q
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTSM 588
+ T +RT + IAHR+STI DAD ++V +G +VE + ENL++Q G++ S+
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 148 bits (375), Expect = 5e-36
Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 44/215 (20%)
Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
+ NVSF Y + + +SF I P + A+IG SG GKST+A+L+ L G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+DG DI + L +G +PQD LF+ ++ NIL
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
SGG++QR+ +ARA+ NP I++ DE S LD+ ER + A
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 536 LATLSKNRTT-LVIAHRLSTITDADNIIVFDQGTV 569
+A L T +VIAHR T+ AD I+V + G V
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 148 bits (374), Expect = 6e-36
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 41/218 (18%)
Query: 357 IVFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
+ NNVSFSY + K +S E+ +K AL+G SG GKST+ +LL + G IT
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+DG + + +++L I ++ Q LF+ TLR N+
Sbjct: 61 LDGVPVSDL-EKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
G + SGGE+QR+++AR +L++ PI++ DE T LD ITER + +
Sbjct: 96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
+ + K++T + I H L+ I D I+ + G ++ G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 142 bits (361), Expect = 2e-34
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 14/218 (6%)
Query: 358 VFNNVSFSYNHHN-CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
N+SFSY IS I + ++G +G GKST+ +LL L G + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 417 DGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQL 472
DG+D+ K++ + LR+ +G++ Q D F T+ + +G N ++E+ VE A L
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA-L 119
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
+ ++ LSGG+KQRV+IA + +P I++ DE T+ LD R +
Sbjct: 120 ELVGLEGLRDRSP------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 533 QTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGT 568
L L T++I H L + + AD +IV + G
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 136 bits (345), Expect = 2e-32
Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 20/218 (9%)
Query: 357 IVFNNVSFSYN----HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
I + SF+++ + K I+ E+ + A++G G GKS++ L + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
+++ G +I + Q+ + N T+R NIL+G P ++ ++ L
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACAL 106
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
+ + LP+G T +GE+G+ LSGG+KQR+S+ARA+ + I + D+ S++D RHI
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 533 --QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGT 568
L L N+T +++ H+L + AD I+V D G
Sbjct: 167 FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 135 bits (342), Expect = 3e-32
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N++ Y G+SFE+ P + L+G +G GK+T+ K+L L G I +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAVEVA 470
G D+ K + +R+ IG +PQ+ L+ + T+R N+ LYG +E +
Sbjct: 65 LGYDVVKEPAK-VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL--- 120
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
L+ F G + ++ LSGG KQR+SIA A+L +P ++I DE TS LD + R
Sbjct: 121 -LELF------GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173
Query: 531 HIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGG 583
I L L+K T L+ H L + D +I+ + G ++ G+ E L + G
Sbjct: 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 135 bits (342), Expect = 3e-32
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 21/231 (9%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG----- 411
I +++ Y K IS +I + TALIG SG GKST+ +LL RL D+
Sbjct: 1 IELRDLNVYYGDK-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAA 466
G + +DG+DI + LR+ +G++ Q F ++ N+ YG + +EL
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 467 VEVAQLKSFIMKLPNGYDTVVGER--GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
VE A K+ V +R L LSGG++QR+ +ARA+ P +++ DE TS+L
Sbjct: 120 VEEALRKA-------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
D I+ I+ +A L K T +++ H + AD G +VE G
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 133 bits (337), Expect = 1e-31
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 23/240 (9%)
Query: 354 NGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
I N+SF Y K +S EI ++ LIG +G GKST+ KLL L G
Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 414 ITIDGQDIK-KITKESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
+ +DG D + + LRQ +G++ Q D LF T+ + +G N +
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN-------LGLPRE 113
Query: 471 QLKSFIMKLPNGYDTVVGERGLK------LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
+++ + +VG L LSGG+KQRV+IA + P I++ DE T+ L
Sbjct: 114 EIEERV----AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169
Query: 525 DIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
D R + L L + +T +++ H L + + AD ++V D G ++ G + +
Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 133 bits (337), Expect = 1e-31
Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 32/252 (12%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408
L+++N + F + + +SFE+ P + ++GESG GKST+A L L
Sbjct: 6 LEVENLTVEFA----TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61
Query: 409 ---IKGGIITIDGQDIKKITKESLRQ----TIGIIPQDTI-LFNDTLR--------YNIL 452
I G + +DG+D+ +++ +R+ I +I QD + N + +
Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121
Query: 453 YGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512
A ++ AVE+ + + LP+ +LSGG +QRV IA A+ P
Sbjct: 122 GKGSRAEARKR--AVELLEQ----VGLPD--PERRDRYPHQLSGGMRQRVMIAMALALKP 173
Query: 513 PIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTV 569
++I DE T++LD+ T+ I L L + L I H L + + AD ++V +G +
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Query: 570 VESGSHENLISQ 581
VE+G E ++S
Sbjct: 234 VETGPTEEILSN 245
Score = 127 bits (320), Expect = 1e-29
Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 27/223 (12%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQ 431
+SF++ + L+GESG GKST+A++L L G I DGQD+ E LR+
Sbjct: 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367
Query: 432 TIGIIPQD---------TILFNDTLRYNILYGNPNASDQELCAAV--EVAQLKSFIMKLP 480
I ++ QD T+ I G A + A + V F+ + P
Sbjct: 368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427
Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
+ +LSGG++QRV+IARA+ P ++I DE S+LD+ + + L L
Sbjct: 428 H-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476
Query: 541 KNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
+ T L I+H L+ + AD + V G +VE G E +
Sbjct: 477 EELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 132 bits (334), Expect = 3e-31
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 33/242 (13%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409
L++KN + F +SF I + L+GESG GKST+A+ + L
Sbjct: 2 LEVKNLSVSFPT----GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57
Query: 410 KGGIITIDGQDIKKITKESL---RQTIGIIPQD---------TI--LFNDTLR-YNILYG 454
G I DG+D+ K+++ R+ I ++ QD TI + LR + L
Sbjct: 58 TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK 117
Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514
+ L V V + + + P+ +LSGG++QRV+IARA+ NP +
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKL 166
Query: 515 IIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVE 571
+I DE TS+LD+ + I L L + T L I H L + AD + V G +VE
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226
Query: 572 SG 573
G
Sbjct: 227 EG 228
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 128 bits (324), Expect = 4e-30
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I ++ S+ + KG+ ++ + A+IG SG GKST+ +L+ L G + I
Sbjct: 1 IELRGLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 417 DGQDIKKITKE---SLRQTIGIIPQDTILFND-TLRYNI---LYGNPNASDQELCAAVEV 469
DG+DI +++ LR+ +G++ Q LF+ T+ N+ L + S++E+ E+
Sbjct: 60 DGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR---EI 116
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
K + L D E LSGG K+RV++ARA+ +P ++++DE T+ LD I
Sbjct: 117 VLEKLEAVGLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 530 RHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
I + +L K T++++ H L T AD I V G +V G+ E L
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 128 bits (323), Expect = 5e-30
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 26/242 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ N+SF Y I +SF I + T ++G +G GKST+ K L L K G + +
Sbjct: 3 LEVENLSFGYGG-KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI----------LYGNPNASDQELC-A 465
DG+DI ++ + L + + +PQ Y + L+G P+ D+E+
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121
Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
A+E+ L+ + + +LSGGE+QRV IARA+ + PI++ DE TS LD
Sbjct: 122 ALELLGLEHLADRPVD-----------ELSGGERQRVLIARALAQETPILLLDEPTSHLD 170
Query: 526 IITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQG 582
I + + L L++ T +++ H L+ AD++I+ G +V G+ E ++++
Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230
Query: 583 GI 584
+
Sbjct: 231 NL 232
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 125 bits (317), Expect = 3e-29
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S S+ + KGIS + + +IG SG GKST+ + L L + G IT+
Sbjct: 3 IEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 417 DGQDI-KKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
DG+D+ K LR+ +G++ Q LF + T+ N+ A E A
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL 121
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
+ L + D + LSGG++QRV+IARA+ +P +++FDE TS+LD +
Sbjct: 122 EKVGLADKADAYPAQ----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177
Query: 535 ALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
+ L++ T++I H + + AD +I DQG ++E G E
Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 124 bits (312), Expect = 9e-29
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 23/233 (9%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NVS +Y + +SF I + L G SG GKST+ KL+Y G I +
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 417 DGQDIKKITKES---LRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAA 466
+G D+ ++ LR+ IG++ QD T+ N L ++ P + +
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV 121
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+++ LK LP+ +LSGGE+QRV+IARAI+ P +++ DE T +LD
Sbjct: 122 LDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTITDADN-IIVFDQGTVVESGSHEN 577
I +++ TT+++A H L + + ++ + G +V S
Sbjct: 171 DLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 122 bits (309), Expect = 2e-28
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 29/252 (11%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408
L++KN + F G+SFE+ + ++GESG GKS +AK + L
Sbjct: 2 LEVKNLSVSFPT----DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57
Query: 409 ----IKGGIITIDGQDIKKITKESLRQ----TIGIIPQDTIL-FNDTLRYN------ILY 453
I GG I DG+D+ ++++ LR+ I +I QD + N + +
Sbjct: 58 PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117
Query: 454 GNPNASDQELCA-AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512
S +E A+E+ +L + +P+ + + +LSGG +QRV IA A+ NP
Sbjct: 118 HGKGLSKKEAKERAIELLEL----VGIPDP-ERRLKSYPHELSGGMRQRVMIAMALALNP 172
Query: 513 PIIIFDEATSSLDIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTV 569
++I DE T++LD+ + I L L + + T ++I H L + + AD + V G +
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
Query: 570 VESGSHENLISQ 581
VE G E +
Sbjct: 233 VEEGPVEEIFKN 244
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 123 bits (309), Expect = 2e-28
Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 24/237 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NVS Y + ++ I + LIG SG GK+T K++ RL + G I I
Sbjct: 2 IEFENVSKRYGNKK-AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNI------LYGNPNASDQELCAAVEV 469
DG+DI + LR+ IG + Q LF + T+ NI L + + +++
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120
Query: 470 AQL--KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
L + + P+ +LSGG++QRV +ARA+ +PPI++ DE +LD I
Sbjct: 121 VGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169
Query: 528 TERHIQTALATLSKN--RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
T + +Q + L K +T + + H + + AD I V D G +V+ + + +++
Sbjct: 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 122 bits (309), Expect = 2e-28
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 42/217 (19%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
N+S Y + +S I + ++G +G GKST+ K L L G I +DG+
Sbjct: 3 ENLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479
D+ ++ + L + I +PQ A+E+ L +
Sbjct: 62 DLASLSPKELARKIAYVPQ---------------------------ALELLGLAHLADR- 93
Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
++ LSGGE+QRV +ARA+ + PPI++ DE TS LDI + + L L
Sbjct: 94 --PFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 540 SK--NRTTLVIAHRLS-TITDADNIIVFDQGTVVESG 573
++ +T +++ H L+ AD +I+ G +V G
Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 122 bits (308), Expect = 2e-28
Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 7/234 (2%)
Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G + +++ Y N + + ISF I+P ++ L+G +G GKST+ RL + +G I
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVEVAQ 471
IDG + + R+ G+IPQ +F+ T R N+ +P SD+E+ E
Sbjct: 61 -QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
LKS I + P D V+ + G LS G KQ + +AR++L I++ DE ++ LD IT +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIY 585
I+ L + T ++ HR+ + + +V ++ V + S + L+++ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 122 bits (307), Expect = 3e-28
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 360 NNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
N+S Y +S EI + ++GESG GKST+A+LL L G I +
Sbjct: 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66
Query: 417 DGQDI-KKITKESLRQTIGIIPQDTI-----------LFNDTLRYNILYGNPNASDQELC 464
DG+ + K ++ + + ++ QD + ++ LR EL
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR-PHGLSKSQQRIAELL 125
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
V + SF+ + P+ +LSGG++QR++IARA++ P ++I DE TS+L
Sbjct: 126 DQVGLP--PSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 525 DIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
D+ + I L L K R T L I+H L+ + D I V D G +VE G E L+S
Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 121 bits (305), Expect = 5e-28
Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 25/238 (10%)
Query: 352 IKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
+ + NVS S+ IS +I + L+G SG GK+T+ +++
Sbjct: 1 MPKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG-------NPNASDQEL 463
G I +DG+DI + E ++ IG++ Q LF + T+ N+ +G +
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
A+E+ L+ F + P+ +LSGG++QRV++ARA++ P +++ DE S+
Sbjct: 118 EEALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSA 166
Query: 524 LDIITERHIQTALATLSKNR--TTLVIAH-RLSTITDADNIIVFDQGTVVESGSHENL 578
LD ++ L L + T + + H + + +D I V + G + + G+ E +
Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 121 bits (304), Expect = 7e-28
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 53/245 (21%)
Query: 339 IEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST 398
+E++N K + G F + G+SF I + L+GESG GKST
Sbjct: 5 LEVKN--LKKYFPVGKG--------FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKST 54
Query: 399 VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA 458
+ +L+ L + G I +G+DI K++KE R+ +
Sbjct: 55 LGRLILGLEEPTSGEILFEGKDITKLSKEERRERV------------------------- 89
Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518
EL V + + F+ + P+ +LSGG++QR+ IARA+ NP +I+ D
Sbjct: 90 --LELLEKVGLP--EEFLYRYPH-----------ELSGGQRQRIGIARALALNPKLIVAD 134
Query: 519 EATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSH 575
E S+LD+ + I L L + T L I+H LS + +D I V G +VE G
Sbjct: 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194
Query: 576 ENLIS 580
E + S
Sbjct: 195 EEVFS 199
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 120 bits (302), Expect = 1e-27
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI--- 413
I +++ Y + K I+ +I +K TALIG SG GKST+ + L R+ D+ G
Sbjct: 8 IEVRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 414 --ITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG--NPNASDQELCAAV 467
+ +DG++I K+ LR+ +G++ Q F ++ N+ YG D+EL V
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIV 126
Query: 468 EVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
E + +K +D V + + L LSGG++QR+ IARA+ P +++ DE TS+L
Sbjct: 127 ESS------LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
D I+ I+ + L K T +++ H + +D F G +VE G + + +
Sbjct: 181 DPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 120 bits (302), Expect = 1e-27
Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 17/232 (7%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NV+ Y ++ EIA + LIG SG GK+T K++ RL + G I I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNI-----LYGNPNASDQELCAAVEVA 470
DG+DI++ LR+ IG + Q LF + T+ NI L P +E
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----RAD 115
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
+L + + P + +LSGG++QRV +ARA+ +PP+++ DE +LD IT
Sbjct: 116 ELLALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 531 HIQTALATLSK--NRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLI 579
+Q L + +T + + H + AD I + G +V+ G+ + ++
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 119 bits (301), Expect = 2e-27
Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%)
Query: 357 IVFNNVSFSY----NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
I NVS ++ +S EI + +IG SG GKST+ +L+ L G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 413 IITIDGQDIKKITKESL---RQTIGIIPQDTILFND-TLRYNILY-----GNPNASDQEL 463
+ +DGQD+ +++ L RQ IG+I Q L + T+ N+ + G P A ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120
Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
VA+L + G +LSGG+KQRV+IARA+ NP I++ DEATS+
Sbjct: 121 ----RVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSA 171
Query: 524 LDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
LD T + I L +++ T ++I H + + D + V DQG +VE G+ + +
Sbjct: 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231
Query: 581 Q 581
Sbjct: 232 N 232
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 119 bits (301), Expect = 2e-27
Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 46/218 (21%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ NVS Y + +S I + AL+G SG GKST+ + + L + G I I
Sbjct: 1 LELKNVSKRYGQKT-VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 417 DGQDIKKITKES--LRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLK 473
DG+D+ + E LR+ IG++ QD LF T+ NI G
Sbjct: 60 DGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------- 100
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
LSGG++QRV++ARA+ +P +++ DE TS+LD IT R ++
Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 534 TALATLSKN--RTTLVIAHRLS-TITDADNIIVFDQGT 568
L +L T +++ H L AD ++V G
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 119 bits (300), Expect = 2e-27
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
N+SFSY I +S ++ + AL G++G GK+T+AK+L L G I ++G
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61
Query: 421 IKKITKESLRQTIGIIPQDT--ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
K I + R++IG + QD LF D++R +L G A + L + +K
Sbjct: 62 -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
+ LSGG+KQR++IA A+L ++IFDE TS LD + +
Sbjct: 121 ERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171
Query: 539 LSK-NRTTLVIAHRLSTITDADNIIVF 564
L+ + +VI H + + ++
Sbjct: 172 LAAQGKAVIVITHDYEFLAKVCDRVLL 198
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 119 bits (300), Expect = 2e-27
Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 357 IVFNNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
I NVS Y K ++ EI + A++G SG GKST+ LL L G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 414 ITIDGQDIKKITKESL----RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVE 468
+ I+G+D+ K++++ L R+ IG + Q+ L D T+ N+ A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
+L +++ D ++ ++ +LSGG++QRV+IARA++ NP II+ DE T +LD T
Sbjct: 122 AEEL----LEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 529 ERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
+ + L L+K +T +++ H AD +I G + E
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 119 bits (299), Expect = 3e-27
Identities = 77/246 (31%), Positives = 113/246 (45%), Gaps = 38/246 (15%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S +Y + K +S I P + ALIG SG GKST+ + L L + G + I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 417 DGQDIKKITKESLRQT---IGIIPQDTILFNDTLRY----NILYG--------------N 455
DG DI K+ ++LRQ IG+I Q FN R N+L G
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQ---FNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 456 PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPII 515
P Q AA+E L + R +LSGG++QRV+IARA+++ P +I
Sbjct: 118 PKEEKQRALAALERVGLLDKAYQ-----------RADQLSGGQQQRVAIARALMQQPKLI 166
Query: 516 IFDEATSSLDIITERHIQTALATL--SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572
+ DE +SLD + R + L + + T +V H++ + AD I+ G +V
Sbjct: 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226
Query: 573 GSHENL 578
G L
Sbjct: 227 GPPAEL 232
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 118 bits (298), Expect = 4e-27
Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 12/221 (5%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ +S +Y +S + P + AL+G SG GK+T+ +L+ L G I I
Sbjct: 1 LELKGLSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
DG+D+ + E R+ IG++ QD LF + T+ NI +G + + A A+++
Sbjct: 60 DGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFG---LKLRGVPKAEIRARVREL 114
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
+ + G + ++ +LSGG++QRV++ARA+ + P +++ DE S+LD ++
Sbjct: 115 LELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172
Query: 536 LATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESG 573
L L + TT+ + H + AD I V ++G +V+ G
Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 118 bits (297), Expect = 5e-27
Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 27/229 (11%)
Query: 357 IVFNNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
I N+S +Y KG+S I + A++G SG GKST+ +L L G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 414 ITIDGQDIKKITKESL----RQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQEL 463
+ +DG DI K++++ L R+ IG + Q L D T N+ L G P +E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 464 C-AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
+E L + P+ +LSGG++QRV+IARA+ +P II+ DE T
Sbjct: 121 AEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 523 SLDIITERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTV 569
+LD T + + L L+K T +V+ H AD II G +
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 116 bits (291), Expect = 3e-26
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 13/233 (5%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I V+ S+ I G+ ++ + A++G SG GKST+ +L+ L G I I
Sbjct: 9 IEVRGVTKSFGDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 417 DGQDIKKITKE---SLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQL 472
DG+DI ++++E +R+ +G++ Q LF+ T+ N+ + + E+ +
Sbjct: 68 DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLM 127
Query: 473 KSFIMKL-PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
K ++ L D E LSGG ++RV++ARAI +P ++ DE TS LD I+
Sbjct: 128 KLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 532 IQTALATLSK--NRTTLVIAHRLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581
I + L+ T +++ H L ++ T AD + V G V+ G+ E L++
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 115 bits (289), Expect = 3e-26
Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 24/233 (10%)
Query: 356 HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
+ NV S+ + K ++ +I + L+G SG GKST+ +++ L + G I
Sbjct: 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG--NPNASDQELCAAVEVA-- 470
IDG+D+ + E ++ I ++ Q+ L+ + T+ NI +G E+ V+
Sbjct: 62 IDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 471 --QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
L+ + + P +LSGG++QRV++ARA+++ P + + DE S+LD
Sbjct: 120 LLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL 168
Query: 529 ERHIQTALATLSKNR--TTLVIAHRLSTI-TDADNIIVFDQGTVVESGSHENL 578
+++ + L + TT+ + H T AD I+V + G + + G+ L
Sbjct: 169 RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 115 bits (289), Expect = 4e-26
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 25/220 (11%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR----- 430
+S ++ + ++G SG GKST+ + + RL + G + IDGQDI ++++ LR
Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102
Query: 431 ------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
Q+ ++P T+L N + ++ A+E+ L+ + K P+
Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD--- 159
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-- 542
+LSGG +QRV +ARA+ +P I++ DEA S+LD + R +Q L L
Sbjct: 160 --------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211
Query: 543 RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
+T + I H L + D I + G +V+ G+ E +++
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 114 bits (288), Expect = 6e-26
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 357 IVFNNVSFSYNHHNCIF---KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
I NVS + K +S + + +IG SG GKST+ + + L G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 414 ITIDGQDIKKITKESL---RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEV 469
+ +DG D+ ++ + L R+ IG+I Q L + T+ N+ E+ A V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL------PLEI-AGVPK 114
Query: 470 AQLKSFIMKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
A+++ +++L G + +LSGG+KQRV IARA+ NP +++ DEATS+LD
Sbjct: 115 AEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
T + I L +++ T ++I H + + D + V ++G VVE G+ E + +
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 113 bits (284), Expect = 2e-25
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+ S+ + + KGI + + +IG SG GKST+ + + L + G I I
Sbjct: 1 IEIKNLHKSFGDFH-VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59
Query: 417 DGQDIKKITKE--SLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELC-AA 466
DG + K LRQ +G++ Q T+L N TL + G A +E
Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+E L P +LSGG++QRV+IARA+ NP +++FDE TS+LD
Sbjct: 120 LEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTV 569
+ + L++ T+V+ H + + AD +I D G +
Sbjct: 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 112 bits (282), Expect = 3e-25
Identities = 70/212 (33%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NV+ +Y + GI+ I+ + L+G SG GKST+ KL+Y+ G I +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 417 DGQDIKKITKES---LRQTIGIIPQDTILFNDTLRYN-------ILYGNPNASDQELCAA 466
+GQD+ + + LR+ IG++ QD L D Y + P + + AA
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAA 120
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+E+ L LP LSGGE+QRV+IARAI+ +P I+I DE T +LD
Sbjct: 121 LELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITDA 558
T I L ++K TT+V+A + D
Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 112 bits (281), Expect = 4e-25
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 24/226 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ N++ Y G+S + L+G +G GK+T+ ++L L G I I
Sbjct: 1 LQLENLTKRYGK-KRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYG-NPNASDQELCAAVEV 469
DGQD+ K + LR+ IG +PQ+ ++ + L Y L G + +E+
Sbjct: 59 DGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
L K LSGG ++RV IA+A++ +P I+I DE T+ LD E
Sbjct: 118 VNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD-PEE 165
Query: 530 RH-IQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
R + L+ L ++R ++ H + + + + V ++G +V G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 111 bits (279), Expect = 6e-25
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 13/210 (6%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
+ +SFE + T L+GE+G GK+T+ +++ L G +TIDG D + +R+ I
Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKI 77
Query: 434 GIIPQDTILFND-TLRYNILY-GNPNA-SDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490
G++ + L+ T R N+ Y N S +E+ A + K + + R
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL-SKRLQL------LEYLDRR 130
Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIA 549
+ S G KQ+V+IARA++ +P I++ DE TS LDI T R + L ++ R + +
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 550 HRLSTITD-ADNIIVFDQGTVVESGSHENL 578
H + + D +IV +G VV GS E L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 111 bits (278), Expect = 7e-25
Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 29/239 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N++ SY + + + IS + + TALIG +G GKST+ K + L G I I
Sbjct: 5 IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 417 DGQDIKKITKESLRQTIGIIPQ-------------DTILFNDTLRYNILYGNPNASDQEL 463
G K + K R IG +PQ D +L + +++
Sbjct: 64 FG---KPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
A+E ++ + +GE LSGG+KQRV +ARA+ +NP +++ DE +
Sbjct: 121 DEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 524 LDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ 581
+D+ ++ I L L + +T L++ H L + + ++ ++ SG E ++++
Sbjct: 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 111 bits (278), Expect = 7e-25
Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 14/234 (5%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S +Y + K ++ EI + A+IG SG GKST+ + L L D G I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 417 DGQDIKKITKESLRQ---TIGIIPQDTILFND-TLRYNILYGNPN-----ASDQELCAAV 467
+G I K+ + LR+ IG+I Q L ++ N+L G S L +
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
+ AQ + ++ G +R LSGG++QRV+IARA+++ P II+ DE +SLD
Sbjct: 124 DKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
+ + + L +++ T +V H++ AD II G +V G L
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 110 bits (278), Expect = 7e-25
Identities = 62/229 (27%), Positives = 107/229 (46%), Gaps = 31/229 (13%)
Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
+++ SY H + + +SFE+ P + A++G +G GKST+ K + L G I + G
Sbjct: 2 VEDLTVSYGGHP-VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 419 QDIKKITKESLRQTIGIIPQ-------------DTILFNDTLRYNILYGNPNASDQELCA 465
+ ++K R+ IG +PQ D +L + A ++
Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115
Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
A+E L D +GE LSGG++QRV +ARA++++P +++ DE + +D
Sbjct: 116 ALERVGLSELA-------DRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 526 IITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
T+ I L L + T LV+ H L + + + ++ TVV SG
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 109 bits (274), Expect = 2e-24
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ VS S+ + + I+ + + A++G SG GKST+ +L+ L G + +
Sbjct: 4 LEIEGVSKSFGGVE-VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 417 DGQDIKKITKESLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAAVEV 469
DG+ + + IG + Q+ T+L N L + + + + +E+
Sbjct: 63 DGRPVTGPGPD-----IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
L F K P+ +LSGG +QRV+IARA+ P +++ DE +LD +T
Sbjct: 118 VGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166
Query: 530 RHIQTALATL--SKNRTTLVIAHRLS-TITDADNIIVFDQG 567
+Q L L +T L++ H + + AD ++V
Sbjct: 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 108 bits (271), Expect = 6e-24
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 357 IVFNNVSFSY---NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
+ NVS +Y + IS + + AL+G SG GKST+ +++ L G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFN-DTLRYNILYG------NPNASDQELCAA 466
+ +DG+ + + G + Q L T+ N+ G + +
Sbjct: 61 VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+E+ L F P+ +LSGG +QRV++ARA+ +P +++ DE S+LD
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 527 ITERHIQTALATL--SKNRTTLVIAHRLS-TITDADNIIVFDQ--GTVVE 571
+T +Q L + +T L++ H + + AD ++V G +V
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 108 bits (270), Expect = 6e-24
Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 28/239 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ ++V FSY H F + + A++G SG GKST+ L+ G I I
Sbjct: 2 LALDDVRFSYGHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470
+G D + + ++ Q+ LF T+ NI G +P NA +E A A
Sbjct: 59 NGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA-AA 115
Query: 471 Q--LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
Q L F+ +LP +LSGG++QRV++AR +++ PI++ DE S+LD
Sbjct: 116 QVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 529 ERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGI 584
+ ++ L R T L++ H AD ++ D G + GS + L+S
Sbjct: 165 RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 108 bits (270), Expect = 6e-24
Identities = 58/212 (27%), Positives = 85/212 (40%), Gaps = 58/212 (27%)
Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
N+SF Y +S + + AL+G +G GKST+ + + L G I IDG
Sbjct: 2 IENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
+DI K+ E LR I Y V QL
Sbjct: 61 KDIAKLPLE------------------ELRRRIGY---------------VPQL------ 81
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
SGG++QRV++ARA+L NP +++ DE TS LD + + L
Sbjct: 82 ----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 539 LS-KNRTTLVIAHRLSTITDA-DNIIVFDQGT 568
L+ + RT +++ H A D +IV G
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 107 bits (269), Expect = 9e-24
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S Y IS + + L+G +G GK+T+ K++ L G I +
Sbjct: 1 IEVRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
G+DIKK E +++ IG +P++ L
Sbjct: 60 LGKDIKK-EPEEVKRRIGYLPEEPSL---------------------------------- 84
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
Y+ + LKLSGG KQR+++A+A+L +P ++I DE TS LD + R L
Sbjct: 85 ------YENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 537 ATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTV 569
L K T++++ H L D + + + G +
Sbjct: 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 105 bits (264), Expect = 3e-23
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 27/223 (12%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR--- 430
S ++ + ++G SG GKST+ +LL RL + G I +DG+DI K++ LR
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 431 --------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCA-AVEVAQLKSFIMKLPN 481
Q+ ++P T+L N + G P A +E A+E+ L+ + K PN
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEV-QGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
+LSGG +QRV +ARA+ +P I++ DEA S+LD + +Q L L
Sbjct: 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 542 N--RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
+T + I H L + D I + G +V+ G+ E ++
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 105 bits (264), Expect = 3e-23
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432
G+S + P + AL+GE+G GKST+ K+L +Y G I IDG+ + + +++L
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84
Query: 433 IGIIPQDTILFND-TLRYNILYGNPNAS-----DQELCAAVEVAQLKSFIMKLPNGYDTV 486
I + Q+ L + ++ NI G D++ L + L DT+
Sbjct: 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR--LGLDIDPDTL 142
Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKN 542
VG+ LS ++Q V IARA+ + ++I DE T++L T + + + ++
Sbjct: 143 VGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL---TVKETERLFDLIRRLKAQG 195
Query: 543 RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
+ I+HRL + + AD I V G VV + S+ + M
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242
Score = 83.3 bits (206), Expect = 2e-16
Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 19/229 (8%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES---- 428
+ +SF + + + G G G++ +A+ L+ G I +DG+ ++ +
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 429 -------LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
R++ G++ +I N TL + D+ A+ ++ +K P+
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
+ LSGG +Q+V +AR + +P ++I DE T +D+ + I + L+
Sbjct: 395 PEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA 449
Query: 542 N-RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
+ L+I+ L + +D I+V +G +V E ++ I +
Sbjct: 450 EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE-ATEEAIMAAA 497
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 104 bits (261), Expect = 7e-23
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 48/228 (21%)
Query: 357 IVFNNVSFS-----YNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDI 409
+ F N++ + + K +S + P + TA++G SG GKST+ L R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVE 468
G + I+G + + K S R+ IG +PQD IL T+R +++
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
A+L+ LSGGE++RVSIA ++ NP ++ DE TS LD +
Sbjct: 106 AAKLRG-------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
Query: 529 ERHIQTALATLSK-NRTTLVIAHRLST--ITDADNIIVFDQGTVVESG 573
+ + L L+ RT + H+ S+ D +++ QG V+ G
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 103 bits (259), Expect = 1e-22
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
G+SF + P + T L+G +G GK+T ++L L + G T+DG D+ K E+ R+ +
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-RRRL 80
Query: 434 GIIPQDTILFND-TLRYNI-----LYG-NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
G + T L++ T R N+ LYG + L + ++ + +
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-------- 132
Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTT 545
R S G +Q+V+IARA++ +PP+++ DE T+ LD++ R ++ + L + +
Sbjct: 133 ---RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189
Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVESG 573
L H + + D ++V +G VV G
Sbjct: 190 LFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 103 bits (259), Expect = 1e-22
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 30/231 (12%)
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
H GIS + + L+GESG GKST+ L RL +G I DGQDI ++++
Sbjct: 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIR-FDGQDIDGLSRKE 357
Query: 429 ---LRQTIGIIPQD---------TI--LFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
LR+ + ++ QD T+ + + LR + + DQ + A+E L
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417
Query: 475 FIM-KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
+ P+ + SGG++QR++IARA++ P +I+ DE TS+LD + +
Sbjct: 418 ATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 534 TALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
L L + + L I+H L+ + +IV G +VE G E + +
Sbjct: 467 DLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
Score = 98.0 bits (244), Expect = 7e-21
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 22/247 (8%)
Query: 361 NVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG-----GII 414
+V+F KGISF+I + AL+GESG GKS A + L G I
Sbjct: 13 SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 415 TIDGQDIKKITKESLRQT----IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
DG+D+ ++ LR IG+I Q+ + + L + I G A L + A
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL-HTI--GKQLAEVLRLHRGLSRA 129
Query: 471 QLKSFIMKLPNGYDTVVGERGLK-----LSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
++ ++L E+ L LSGG++QRV IA A+ P ++I DE T++LD
Sbjct: 130 AARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
Query: 526 IITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ- 581
+ + I L L L I H L + AD + V G +VE+G+ E L +
Sbjct: 190 VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP 249
Query: 582 GGIYTSM 588
YT
Sbjct: 250 QHPYTRK 256
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 103 bits (258), Expect = 2e-22
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLR 430
I G+S + + AL+G +G GK+T+ K + L + G I DG+DI + E R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 431 QTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
IG +P+ +F + T+ N+L G + A +E ++ +L + G
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLKERRKQLAGT 132
Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI- 548
LSGGE+Q ++IARA++ P +++ DE + L I A+ L T+++
Sbjct: 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188
Query: 549 ---AHRLSTITDADNIIVFDQGTVVESGSHENL 578
A I AD V ++G VV G+ L
Sbjct: 189 EQNARFALEI--ADRAYVLERGRVVLEGTAAEL 219
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 102 bits (256), Expect = 3e-22
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
+S + + L+G +G GK+T K+L G I+G I+ +++ RQ++
Sbjct: 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSL 77
Query: 434 GIIPQDTILFN-----DTLR-YNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTV 486
G PQ LF+ + LR Y L G P + +E + V L K
Sbjct: 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR----- 132
Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTL 546
LSGG K+++S+A A++ P +++ DE TS LD + R I + + K R+ +
Sbjct: 133 ------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII 186
Query: 547 VIAHRLSTITD-ADNIIVFDQGTVVESGS 574
+ H + D I + G + GS
Sbjct: 187 LTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 101 bits (253), Expect = 6e-22
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431
I F++ + T + G SG GKST+ + + L GG I ++G + KKI ++
Sbjct: 17 IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75
Query: 432 TIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490
IG++ Q LF + +R N+ +G ++E +V+ L G D ++
Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-ELLDLL------GLDHLLNRY 128
Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVI 548
+LSGGEKQRV++ARA+ P +++ DE S+LD + L + K N + +
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 549 AHRLSTI-TDADNIIVFDQGTVVESG 573
H LS AD I+V + G + G
Sbjct: 189 THDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 100 bits (251), Expect = 9e-22
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431
+F + TAL G SG GK+++ ++ L G I ++G+ + K I ++
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 432 TIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490
IG + QD LF + T+R N+ YG + + V + ++ + + P
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG--------- 127
Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVI 548
LSGGEKQRV+I RA+L P +++ DE +SLD+ +R I L L N L +
Sbjct: 128 --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 549 AHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
+H L + AD ++V + G V SG E +
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 100 bits (251), Expect = 1e-21
Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQT 432
+S + + AL+GE+G GKST+ K+L+ LY G I +DG++++ K ++++R
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80
Query: 433 IGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK--LPNGYDTVVGE 489
IG++ Q +L T+ NI+ G + + A++K + LP D V +
Sbjct: 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD 140
Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK----NRTT 545
LS GE+QRV I +A+ + ++I DE T+ L T + L + +T
Sbjct: 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQEADELFEILRRLAAEGKTI 193
Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVES 572
+ I H+L + AD + V +G VV +
Sbjct: 194 IFITHKLKEVMAIADRVTVLRRGKVVGT 221
Score = 66.3 bits (162), Expect = 2e-11
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 11/208 (5%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT--KESLRQ 431
K +SFE+ + + G +G G+S + + + L G I ++G+D+ +E R
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334
Query: 432 TIGIIPQDTI----LFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
+ +P+D + + +L N++ G + ++ ++ F +L +D
Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394
Query: 488 GERGLK---LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT 544
LSGG +Q++ +AR + + P ++I + T LD+ I L L
Sbjct: 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGK 454
Query: 545 T-LVIAHRLSTITD-ADNIIVFDQGTVV 570
L+I+ L I + +D I V +G +V
Sbjct: 455 AVLLISEDLDEILELSDRIAVIYEGRIV 482
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 99.5 bits (248), Expect = 2e-21
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
K +S E+ ++G +G GKS + + + G I ++G+DI + E ++ I
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73
Query: 434 GIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
+PQ+ LF + T+ NI YG + +V ++ + G D ++ +
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPE 128
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI--AH 550
LSGGE+QRV+IARA++ NP I++ DE S+LD+ T+ ++ L + K V+ H
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188
Query: 551 RLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581
AD + + G +++ G E + +
Sbjct: 189 DFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 99.0 bits (247), Expect = 3e-21
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 11/225 (4%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
N+S Y +G+S E+ + AL+G +G GK+T+ K + L + G I DG+D
Sbjct: 8 NLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGED 66
Query: 421 IKKI-TKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
I + E R I +P+ +F T+ N+L G D+E + F
Sbjct: 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF--- 123
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
P + +R LSGGE+Q ++IARA++ P +++ DE + L I A+
Sbjct: 124 -PRLKE-RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 539 LSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
L K T L++ + AD V + G +V SG+ L++
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 98.4 bits (245), Expect = 5e-21
Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ G+S ++ P + A++G +G GKST+ K L G +T++G + E L +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 432 TIGIIPQDTIL-FNDTLRYNILYGN-PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
++PQ++ L F T++ + G P+ S +E E ++ + + + G
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE---PEEDERIAAQALAA-TDLSGLAGR 131
Query: 490 RGLKLSGGEKQRVSIAR------AILKNPPIIIFDEATSSLDIITERHI-QTALATLSKN 542
LSGGE+QRV +AR + + + DE TS+LDI + H + A +
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG 191
Query: 543 RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
L + H L+ AD I++ QG V+ SGS +++++
Sbjct: 192 GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 98.1 bits (244), Expect = 6e-21
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ + + FSY F A + TA++G SG GKST+ L+ + G + I
Sbjct: 1 VRLDKIRFSYGEQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470
+G D+ + + ++ Q+ LF T+ N+ G +P A D++ A+EVA
Sbjct: 58 NGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ---AIEVA 112
Query: 471 Q----LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
L +LP +LSGGE+QRV++AR ++++ P+++ DE ++LD
Sbjct: 113 LARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
+ + L T L++ H+ A ++ D G + G
Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 97.5 bits (243), Expect = 1e-20
Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 24/232 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I NVS Y G+S +I + L+G SG GK+T+ +L+ G I +
Sbjct: 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG------NPNASDQELCAAVEV 469
DG+DI + ++ + + Q+ LF T+ NI +G + + A+++
Sbjct: 60 DGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDL 117
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
QL+ + + P+ +LSGG++QRV+IARA++ P +++ DE +LD+
Sbjct: 118 VQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 530 RHIQTALATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENL 578
+ +Q L L K T + + H +T +D I V ++G + + G+ E +
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 95.9 bits (238), Expect = 3e-20
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 8/219 (3%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLYRLYDIKGGII- 414
+ N FS+ I+ I + T ++G+ G GKS++ +L + ++G +
Sbjct: 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60
Query: 415 --TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
+ + + T+ R ++ Q L N T+ NI +G+P + Q A + L
Sbjct: 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSL 119
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
+ I LP G T +GERG+ LSGG++QR+ +ARA+ +N I+ D+ S+LDI H+
Sbjct: 120 QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179
Query: 533 QTA--LATLSKNRTTLV-IAHRLSTITDADNIIVFDQGT 568
L L ++ TLV + H+L + AD II G+
Sbjct: 180 MQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 95.8 bits (238), Expect = 3e-20
Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 18/212 (8%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ- 431
IS +I + AL+G SG GKST+ +++ L G I ++G+ + ++ ++R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 432 TIGIIPQDTILF-NDTLRYNILYG----NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
+G + Q LF + T+ NI +G S+ E+ A VE L+ +++L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE-ELLR--LVQLEG----- 129
Query: 487 VGER-GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR-- 543
+ +R +LSGG++QRV++ARA+ P +++ DE +LD + ++ L L
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 544 TTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
TT+ + H + AD ++V +QG + + G
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 95.1 bits (236), Expect = 5e-20
Identities = 67/262 (25%), Positives = 125/262 (47%), Gaps = 24/262 (9%)
Query: 329 EELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY--NHHNCIFKGISFEIAPSKKT 386
+E L EK + +N D K + NN+ FS + K I+ +I +
Sbjct: 14 DEGFGELLEKAKQEN----NDRKHSSDD---NNLFFSNLCLVGAPVLKNINLKIEKGEML 66
Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDT 446
A+ G +G GK+++ L+ + G I G+ I Q + + T
Sbjct: 67 AITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-------------ISFSSQFSWIMPGT 113
Query: 447 LRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506
++ NI++G + + + V+ QL+ I K P +TV+GE G+ LSGG++ R+S+AR
Sbjct: 114 IKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172
Query: 507 AILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLSTITDADNIIVFD 565
A+ K+ + + D LD+ TE+ I ++ + L N+T +++ ++ + AD I++
Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 566 QGTVVESGSHENLISQGGIYTS 587
+G+ G+ L S ++S
Sbjct: 233 EGSSYFYGTFSELQSLRPDFSS 254
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 94.6 bits (235), Expect = 6e-20
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 24/217 (11%)
Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427
I KG+ + + A++G SG GKST+ +L L D G + + GQ + K+ ++
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80
Query: 428 ---SLR--------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
+LR Q+ +IP T L N L + +++D A + +
Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENVAL--PLELRGESSADSRAGAKALLEAV---- 134
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
G + +LSGGE+QRV++ARA P ++ DE T +LD T I L
Sbjct: 135 -----GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 537 ATLSKNR-TTLV-IAHRLSTITDADNIIVFDQGTVVE 571
L++ R TTLV + H D + G +VE
Sbjct: 190 FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 94.7 bits (236), Expect = 7e-20
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 397 STVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDTILF-NDTLRYNILYG 454
ST+ KL+ L G I +DG+D + ++++LR+ IG++ QD LF T+R N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 455 -NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513
+D A+E L F+ + P G LSGG+KQRV+IARA+LK P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDRSPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 514 IIIFDEATS 522
+++ DE T+
Sbjct: 111 LLLLDEPTA 119
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 92.6 bits (230), Expect = 2e-19
Identities = 89/426 (20%), Positives = 156/426 (36%), Gaps = 43/426 (10%)
Query: 144 IRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNW-- 201
++S+ +I + + + +AF + M VI+Y + ++
Sbjct: 173 LQSVISLISFTGI-----LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIG 227
Query: 202 --RVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKE---SAIS 256
+ L+ + L + + N E I + EK E RL+ +
Sbjct: 228 RPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVR 287
Query: 257 VATSLGWLNFGQGLIFSIGMVITMIISSHAVYI-GEQTVGDFV----FINTLLTQLAIPL 311
L W G G + V+ I+ + Y G+ T G + + + L+ +
Sbjct: 288 AQIRLTWFQLGYGWL----SVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFI 343
Query: 312 NILGTI--YRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKI--KNGHIVFNNVSFSYN 367
+ I +R + E + L E + + I N+S
Sbjct: 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTP 403
Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427
+ ++FE+ P ++ + GESG GK+++ + L L+ G I++
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-------- 455
Query: 428 SLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVEVAQLKSFIMKLPNGYDT 485
+ +PQ L TLR + Y N SD EL A + L +L
Sbjct: 456 ---SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE---- 508
Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545
LSGGE+QR++ AR +L P + DEATS+LD TE + L + T
Sbjct: 509 -EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATV 567
Query: 546 LVIAHR 551
+ + HR
Sbjct: 568 ISVGHR 573
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 92.5 bits (230), Expect = 3e-19
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ N+++ +Y + IS + + +G +G GK+T K++ L G IT
Sbjct: 1 LKTNDLTKTYGKKRVL-DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
DG+ +K E+LR+ IG + + Y N A + A + K I
Sbjct: 60 DGKSYQK-NIEALRR-IGAL----------IEAPGFYPNLTARENLRLLARLLGIRKKRI 107
Query: 477 MKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
++ + G ++ S G KQR+ IA A+L NP ++I DE T+ LD + ++
Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167
Query: 535 ALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESG 573
+ +L T++I+ H LS I AD I + ++G ++E G
Sbjct: 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 91.8 bits (228), Expect = 5e-19
Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ NV+ + + + ++ +IA + L+G SG GK+T +++ L + G I I
Sbjct: 1 VELENVTKRFGNVTAL-DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG------NPNASDQELCAAVEV 469
G+D+ + + I ++ Q+ L+ + T+ NI +G + D+ + E+
Sbjct: 60 GGRDVTDL--PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
Q++ + + P +LSGG++QRV++ RAI++ P + + DE S+LD
Sbjct: 118 LQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166
Query: 530 RHIQTALATLSKN--RTTLVIAH-RLSTITDADNIIVFDQGTVVESG 573
++ L L + TT+ + H ++ +T AD I V + G + + G
Sbjct: 167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 91.9 bits (228), Expect = 5e-19
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 12/230 (5%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409
+ + N F + G+S EIA +IG +G GKST+ +
Sbjct: 2 ISLSNATKTFFKGT---PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP 58
Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTIL---FNDTLRYNILYGNPNASDQELCAA 466
G I IDG D+ K + + + QD + T+ N+ + L +A
Sbjct: 59 TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA 118
Query: 467 VEVAQLKSF---IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
+ + SF + +L G + + +R LSGG++Q +S+ A L P I++ DE T++
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 524 LDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVV 570
LD T + A + + TTL++ H + D + +I+ G +V
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 91.1 bits (226), Expect = 9e-19
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+ Y + +G+SF + + L+G +G GK+T K+L L G T+
Sbjct: 1 IEVENLVKKYGDFEAV-RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAVEVA 470
G D+ + +E +R+ IGI+ QD + ++ T N+ LYG P A +E +
Sbjct: 60 AGHDVVREPRE-VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RID 113
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
+L F + L D +V SGG ++R+ IAR+++ P ++ DE T LD T
Sbjct: 114 ELLDF-VGLLEAADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168
Query: 531 HIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
H+ + L + T L+ H + D + + D G ++ G+ E L
Sbjct: 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 91.0 bits (226), Expect = 9e-19
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 24/237 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I NVS SY + +S +I T++IG +G GKST+ ++ RL G ITI
Sbjct: 2 ITIENVSKSYGTKV-VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 417 DGQDIKKITKESLRQTIGIIPQD-TILFNDTL-------RYNILYGNPNASDQELC-AAV 467
DG ++ + L + + I+ Q+ I T+ R+ G D+ + A+
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
E L L + Y +LSGG++QR IA + ++ ++ DE ++LD+
Sbjct: 121 EYLHL----EDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 528 TERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
I L L+ +T +V+ H ++ + +D+I+ G VV+ GS + +I
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 90.8 bits (225), Expect = 1e-18
Identities = 116/575 (20%), Positives = 217/575 (37%), Gaps = 75/575 (13%)
Query: 19 MWPANRWDLKVRIIGAMFSVIASKFVI-LGIPFLLKWVTESLIE--QSTASKTTSYLTIG 75
+ NRW SV+A LL ++ ++LIE ++ +L +
Sbjct: 7 LLRQNRW--------PFISVMALSLASGALGIGLLAFINQALIETADTSLLVLPEFLGLL 58
Query: 76 IVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVS-HVYKLSQRFHINYKVG 134
++ +++S + + + H L E + +++ + ++ +
Sbjct: 59 LLFMVSSLISQLGLTTLGQHFIYKLRSEFIK--------KILDTPLERIER-----LGSA 105
Query: 135 KLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWF 194
+L + +++ +R+I + + IL S A+L Y + + +TV+ V
Sbjct: 106 RLLAGLTSDVRNISFAFSRLPELVQAIILTLG-SAAYLAY----LSPKMFLLTVVWIV-V 159
Query: 195 TIITSNWRVGLSKKMNNLLHECHAKVF-----------DTLINFETIQYFNSEKFEINRL 243
TI + K E K+ + +N E +Y ++ + +
Sbjct: 160 TIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219
Query: 244 EKYISKYKESAISVATS-LGWLNFGQGLIFS-IGMVITMIISSHAVYIGEQTVGDFVFIN 301
E Y+ I T L +N+ ++ IG+V + +S +G + I
Sbjct: 220 E-----YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS-----LGWASTNVAATIV 269
Query: 302 TLLTQLAIPLNILGTI---YRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIV 358
+L L PL I ++ +F +I +L + K + D K +
Sbjct: 270 LVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKADFPRPQAFPDWK----TLE 324
Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
NV F+Y + I+ I + LIG +G GKST+A LL LY + G I +DG
Sbjct: 325 LRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
+ + E R+ + D LF+ L AS Q + ++ +L
Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTSL 439
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
+ LKLS G+K+R+++ A+L+ I++ DE + D R L
Sbjct: 440 NDGRFSN------LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLP 493
Query: 539 LSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
L K +T I+H AD ++ G + E
Sbjct: 494 LLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 90.4 bits (224), Expect = 1e-18
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 17/239 (7%)
Query: 356 HIVFNNVSFSYNHHNC----IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD--- 408
+ F N++ S + I KG+S P + A++G SG GK+T+ L +
Sbjct: 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL 84
Query: 409 IKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAV 467
G I ++G+ S R+ G + QD +L T+R + + L
Sbjct: 85 KLSGEILLNGR---PRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE 141
Query: 468 EVAQLKSFI--MKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
+ +++ I + L DT++G G++ LSGGE++RVSIA +L +P I+ DE TS L
Sbjct: 142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201
Query: 525 DIITERHIQTALATLS-KNRTTLVIAHRLST--ITDADNIIVFDQGTVVESGSHENLIS 580
D + + L L+ RT + H+ S+ D +++ +G VV SGS L+
Sbjct: 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 90.6 bits (225), Expect = 1e-18
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI-----KKITKES 428
+S E+ P + LIG +G GK+T+ L+ Y G + G+DI +I +
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 429 LRQTIGII---PQDTILFN------DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479
+ +T I P T+L N L + L G P A +E A +L F + L
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF-VGL 139
Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
D G LS G+++R+ IARA+ P +++ DE + L+ + + L
Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 540 SKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576
T L+I H + + AD I+V + G V+ G+ E
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 88.8 bits (220), Expect = 4e-18
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I NVS N I +S+++ P + A++G +G GK+T+ LL + G +T+
Sbjct: 32 IELKNVSVRRNGKK-ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 417 DGQDIKKI-TKESLRQTIGIIP---QDTILFNDTLRYNILYG--------NPNASDQELC 464
G+ K T LR+ IG++ + +T+R +L G + + ++L
Sbjct: 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA 150
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
AA + L+ K + LS GE++RV IARA++K+P ++I DE L
Sbjct: 151 AAQWL--LELLGAK------HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202
Query: 525 DIIT-ERHIQT--ALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
D+I E+ + LA L + H I + ++ +G VV G
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 88.9 bits (220), Expect = 4e-18
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
I IS + + A+ G SG GKST+ K++ L G + +G+D+ + E+ RQ
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
+ Q LF DT+ N+++ ++ A + L F LP D+++ +
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPW-QIRNRRPDRAAALDLLARF--ALP---DSILTKNI 131
Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL--SKNRTTLVIA 549
+LSGGEKQR+++ R + P I++ DE TS+LD +R+I+ + +N L I
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191
Query: 550 H 550
H
Sbjct: 192 H 192
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 87.4 bits (217), Expect = 9e-18
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 19/215 (8%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
+SF + P + LIG +G GK+T+ L+ G + DG+DI + +
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL-PPHEIARL 75
Query: 434 GIIP--QDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSF---------IMKLPN 481
GI Q LF + T+ N++ + L A + + + L +
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS- 540
D GE LS G+++R+ IARA+ +P +++ DE + L+ + + L
Sbjct: 136 LADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 541 KNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
+ T L++ H + + AD + V DQG V+ G+
Sbjct: 192 RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 86.9 bits (215), Expect = 2e-17
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 21/226 (9%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
+ ISFEI + +G +G GKST K+L L G + ++G+D + +E LR
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100
Query: 434 GIIPQDTILF-----NDTLRYN-ILYGNPNASDQE-LCAAVEVAQLKSFIMKLPNGYDTV 486
++ Q L+ D+L ++Y P+ E L E+ L+ F+
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152
Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--T 544
KLS G++ R +A A+L P ++ DE T LD+ + +I+ L ++ R T
Sbjct: 153 ---PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209
Query: 545 TLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSMW 589
L+ H I D +++ DQG +V G+ L Q G Y
Sbjct: 210 VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 86.1 bits (213), Expect = 2e-17
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I NVS + + +S +I + AL+G SG GK+T+ +L+ L G I
Sbjct: 3 IEVRNVSKRFGDFVAL-DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG--------NPNAS--DQELCA 465
G+D + + + +G + Q LF T+ N+ +G P + ++
Sbjct: 62 GGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE 119
Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
+++ QL + P +LSGG++QRV++ARA+ P +++ DE +LD
Sbjct: 120 LLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
Query: 526 IITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
+ ++ L L + TT+ + H + AD ++V ++G + + G+ + +
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 86.0 bits (213), Expect = 2e-17
Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQDIKKITKES 428
I +S + + A++G SG GK+T+ + + G I +GQ K +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78
Query: 429 LRQTIGIIPQ-DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
++ + + Q D +L T+R + Y ++ A+ +++ +++ T +
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA--LTRI 136
Query: 488 GERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK-NRTT 545
G +K +SGGE++RVSIA +L +P ++I DE TS LD T ++ + L+ L++ NR
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 546 LVIAH--RLSTITDADNIIVFDQGTVVESG 573
++ H R D I++ G +V SG
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 85.9 bits (212), Expect = 3e-17
Identities = 88/454 (19%), Positives = 166/454 (36%), Gaps = 39/454 (8%)
Query: 155 VVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLH 214
V ++ +L + S L Y I+ +VIL ++ I L +L
Sbjct: 375 TVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISG-----LLVFFAVFILQ 429
Query: 215 ECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLG----WLNFGQGL 270
N T F+ L + + A +L G
Sbjct: 430 SFA--------NGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDE 481
Query: 271 IFSIGMVIT--MIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEI 328
F ++ +I + + + V D +F L + R + +
Sbjct: 482 SFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFL---------LIFVPFKRRMRALTQNML 532
Query: 329 EELLNILNEKIEIQNAVN---SKDLKIKNGH-IVFNNVSFSYNHHNCIFKGISFEIAPSK 384
+ + EK+++ N + + +V NN+S Y + +G+SF + P +
Sbjct: 533 KGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGE 592
Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI-KKITKESLRQTIGIIPQDTILF 443
L+G +G GK+T K+L G I G DI + +R+ +G PQ L+
Sbjct: 593 CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW 652
Query: 444 NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVS 503
+ L A + L + + ++ + + G ++ SGG K+R+S
Sbjct: 653 EELTGREHLE--FYARLRGLPRSDIGSAIEKLLRLVGLGPYAN--KQVRTYSGGNKRRLS 708
Query: 504 IARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA--DNI 561
A A++ +P +I+ DE ++ LD RH+ +A L KN +++ +A
Sbjct: 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT 768
Query: 562 IVFDQGTVVESGSHENLISQGGIYTSMWKKQCES 595
+ G + GS + L S+ G ++ + E
Sbjct: 769 AIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKEL 802
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 85.6 bits (212), Expect = 4e-17
Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 32/243 (13%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407
L+IK+ H+ I KG++ + + A++G +G GKST+A + + Y
Sbjct: 4 LEIKDLHV-------EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56
Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFNDTLRYNILYGNPNA 458
++ G I DG+DI +++ + R GI IP T N G
Sbjct: 57 EVTEGEILFDGEDILELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115
Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL--KLSGGEKQRVSIARAILKNPPIII 516
+ + +LK L G D ER + SGGEK+R I + +L P + I
Sbjct: 116 LPEF------IKELKEKAELL--GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI 167
Query: 517 FDEATSSLDIITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESG 573
DE S LDI + + + L + R L+I H RL D + V G +V+SG
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
Query: 574 SHE 576
E
Sbjct: 228 DPE 230
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 84.6 bits (209), Expect = 7e-17
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%)
Query: 356 HIVFNNVSFSYNH-HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
+ +++S SY + +S IA + ++G SG GK+T+ L+ G I
Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62
Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFN-DTLRYNILYGNPNASDQELCAAVEVAQLK 473
++G ++I + G++ Q+ L + N+ +G ++ Q+
Sbjct: 63 QLNG---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
+ + L + + LSGG +QRV IARA+ P +++ DE +LD +T +Q
Sbjct: 118 ALV-GLEGAEHKYIWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172
Query: 534 TALATLSK--NRTTLVIAHRL-STITDADNIIVFD--QGTVVES 572
L L + + L+I H + + A ++V G VVE
Sbjct: 173 ELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 84.4 bits (209), Expect = 7e-17
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 10/224 (4%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
N+S Y + G+S + + L+G +G GK+T ++ L G I +DGQD
Sbjct: 5 NLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD 63
Query: 421 IKKIT-KESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
I K+ + R IG +PQ+ +F T+ NIL + L +L+ + +
Sbjct: 64 ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV---LEIRGLSKKEREEKLEELLEE 120
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
+ + LSGGE++RV IARA+ NP ++ DE + +D I + IQ +
Sbjct: 121 F--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 539 LSKNRTTLVIA-HRLS-TITDADNIIVFDQGTVVESGSHENLIS 580
L ++I H + T++ D + +G V+ G+ E + +
Sbjct: 179 LKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 84.6 bits (209), Expect = 7e-17
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 8/237 (3%)
Query: 350 LKIKNGHIVFNNVS--FSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY 407
L+++N F + F + K +SF + + A+IGE+G GKST+AK+L +
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAV-KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGIIPQD-TILFNDTLRYNILYGNPNASDQELCAA 466
+ G I I+ + + I +I QD N LR + P + +L
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
Q+ +++ L+ G+KQRV++ARA++ P III DEA +SLD+
Sbjct: 124 QRRKQIFE-TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
+ + L + + + + + + I +D ++V +G VVE GS ++++
Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239
>gnl|CDD|144311 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 275
Score = 84.3 bits (209), Expect = 9e-17
Identities = 48/282 (17%), Positives = 112/282 (39%), Gaps = 8/282 (2%)
Query: 31 IIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVN 90
++ + +I + L P LL +SLI+ + +++ ++I + V+
Sbjct: 1 LLIGILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVG------VLQ 54
Query: 91 LISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMI 150
+ +L +GQ L+ ++ + L F VG+L+S ++N + I
Sbjct: 55 GLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDG 114
Query: 151 IRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMN 210
+ + ++ + ++Y YG ++ + L + + + + L++K
Sbjct: 115 LGDKLGLFFQSLATVVGGLIVMFY-YGWKLTLVLLAILPLLILLSAVLAKILRKLNRKEQ 173
Query: 211 NLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGL 270
+ + ++L T++ F E++E+ R +K + +++ I A G
Sbjct: 174 KAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAIIAGLSFGITQF 233
Query: 271 IFSIGMVITM-IISSHAVYIGEQTVGDFVFINTLLTQLAIPL 311
I + + + +V G +VG +L QL+ PL
Sbjct: 234 ISYLSYALALWFGGYLSVISGGLSVGTVFAFLSLGLQLSGPL 275
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 83.9 bits (207), Expect = 1e-16
Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 28/235 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N ++ Y H +F I+ + + L+G SG GKS++ ++L L + G + I
Sbjct: 3 IQLNGINCFYGAHQALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 417 DGQ--DIKKITKE----SLRQTIGIIPQDTILF-NDTLRYNILYGNPN----ASDQELCA 465
G D K + LR+ +G++ Q L+ + T++ N++ + DQ L
Sbjct: 62 AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALAR 121
Query: 466 AVEVA---QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
A ++ +LK + + P L LSGG++QRV+IARA++ P +++FDE T+
Sbjct: 122 AEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 523 SLDIITERHIQTALATLSK-NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSH 575
+LD I + + L++ T +++ H + A ++ + G +VE G
Sbjct: 171 ALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 82.6 bits (204), Expect = 2e-16
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 26/232 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ F NVS Y+ + K +SF I + A++G +G GKST+ KLL G + +
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 417 DGQDIKKITKESLRQTIGIIPQD--TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
G+ +K IG Q + + T+ + G P+ +QE+ A L
Sbjct: 382 -GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV-----RAYLGR 425
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
F + LSGGEK R+ +A+ +L+ P +++ DE T+ LDI + ++
Sbjct: 426 FGFT-----GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480
Query: 535 ALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIY 585
AL T L+++H + A I + + G +E+ + Q
Sbjct: 481 ALLDFEG--TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
Score = 82.2 bits (203), Expect = 3e-16
Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 50/264 (18%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S +Y + + +S + P ++ L+G +G GKST+ K+L + G +T
Sbjct: 4 ITLENLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+G + Q+ L T+ ++ G + A L
Sbjct: 63 PKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADP 111
Query: 476 IMKLPNGYDTVVGE--------------RGLK----------LSGGEKQRVSIARAILKN 511
+L + ++ E GL LSGG ++RV++ARA+L+
Sbjct: 112 DDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEE 171
Query: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF-DQGTVV 570
P +++ DE T+ LD+ + ++ L T +V++H + + I+ D+G
Sbjct: 172 PDLLLLDEPTNHLDLESIEWLEDYLK--RYPGTVIVVSHDRYFLDNVATHILELDRG--- 226
Query: 571 ESGSHENLISQGGIYTSMWKKQCE 594
L G Y+S + +Q
Sbjct: 227 ------KLTPYKGNYSS-YLEQKA 243
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 81.6 bits (202), Expect = 5e-16
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 64/203 (31%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432
G+S + + AL+GE+G GKST+ K+L LY G I +DG+++ + +++ R
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76
Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
I ++ Q L VGER
Sbjct: 77 IAMVYQ----------------------------------------LS------VGER-- 88
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKNRTTLVI 548
Q V IARA+ +N ++I DE T++L T ++ + ++ + I
Sbjct: 89 -------QMVEIARALARNARLLILDEPTAAL---TPAEVERLFKVIRRLRAQGVAVIFI 138
Query: 549 AHRLSTITD-ADNIIVFDQGTVV 570
+HRL + + AD + V G VV
Sbjct: 139 SHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 80.2 bits (198), Expect = 2e-15
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 16/236 (6%)
Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
+V N++ SY + +S E+ + L+G +G GK+T ++ L G
Sbjct: 1 DMSTLVAENLAKSYKK-RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 413 IITIDGQDIKKIT-KESLRQTIGIIPQDTILFND-TLRYNIL----YGNPNASDQELCAA 466
I +D +DI K+ + R IG +PQ+ +F T+ NI+ + E
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
++ A L+ F + + LSGGE++RV IARA+ NP I+ DE + +D
Sbjct: 120 LD-ALLEEF------HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172
Query: 527 ITERHIQTALATL-SKNRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLIS 580
I IQ + L + L+ H + T+ D + G V+ GS E +++
Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 79.7 bits (197), Expect = 2e-15
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 49/233 (21%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407
L+IK+ H+ I KG++ I + AL+G +G GKST+AK + + Y
Sbjct: 1 LEIKDLHVSVGGKE--------ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY 52
Query: 408 DIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA 466
++ G I G+DI + +E R I + Q P
Sbjct: 53 EVTEGEILFKGEDITDLPPEERARLGIFLAFQ----------------YP--------PE 88
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+ + F+ + G SGGEK+R I + +L P + I DE S LDI
Sbjct: 89 IPGVKNADFLRYVNEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137
Query: 527 ITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGSHE 576
R + + L + ++ L+I H RL D + V G +V+SG E
Sbjct: 138 DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 79.6 bits (196), Expect = 2e-15
Identities = 110/595 (18%), Positives = 213/595 (35%), Gaps = 78/595 (13%)
Query: 9 LRTLKKLWPYMWPANRWDLKVRIIGAMFS-VIASKFVILGIPFLLKWVTESLIEQSTASK 67
+ ++ ++P+ ++ A+ + + + + I + + + +K
Sbjct: 62 FQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNI-----PTKFYVALINK 116
Query: 68 TTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSH--VYKLS- 124
+ + + ++N + + LY+ + T L+ YKLS
Sbjct: 117 DAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSN 176
Query: 125 QRFHINYKVGKLSSAISNGIRSI-EMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSI 183
I+ +L+ + R + + ++ F + + W I+
Sbjct: 177 LDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYF 236
Query: 184 MAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRL 243
+ TVI I V +K+ H+++ +N E I ++ + E R
Sbjct: 237 LIGTVINKTLRGPIV-KLTV-EQEKLEGDFRYKHSRL---RVNAEEIAFYRGGQVEHQRT 291
Query: 244 EKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMII-------------SSHAVYIG 290
++ + + + WL F + +G +++ ++ S A G
Sbjct: 292 DQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSG 351
Query: 291 EQTVGDFVFIN-----TLLTQLAIPLNIL-GTIYR------------DSRQSFIEIEELL 332
+ FVFI L L+ L+ L G +R Q EE L
Sbjct: 352 LISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEEL 411
Query: 333 NILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALI-G 390
+ + S + + I F VS S + + + + +S E+ PS + LI G
Sbjct: 412 GEAEWGLSLPP--GSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEV-PSGQNLLITG 468
Query: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450
SG GK+++ ++L L+ GG +T K+ +PQ + TLR
Sbjct: 469 PSGCGKTSLLRVLGGLWPSTGGKLTKPT---DGGPKDLF-----FLPQRPYMTLGTLRDQ 520
Query: 451 ILYGNPN-------ASDQELCAAVEVAQLKSFIMKLPNGYDT-VVGERGLKLSGGEKQRV 502
++Y ASD+++ +E QL +++ G D V + LS GE+QR+
Sbjct: 521 VIYPLKAEDMDSKSASDEDILRILENVQL-GHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579
Query: 503 SIARAILKNPPIIIFDEATSSLDIITE----RHIQTALATLSKNRTTLVIAHRLS 553
+ AR P I DE TS++ E R + T + + HR S
Sbjct: 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR------EMGITFISVGHRKS 628
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 79.1 bits (195), Expect = 3e-15
Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
NV+ + + ISF + + L+G +G GK+T +++ + G + DG
Sbjct: 3 VENVTKRFGRVTAL-DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61
Query: 419 QDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYGNPN----ASDQELCAAVE 468
+ + + R IG +P++ L+ D L Y L G E +E
Sbjct: 62 KPLD----IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE 117
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
+++ + +R +LS G +Q+V A++ +P ++I DE S LD +
Sbjct: 118 LSEYAN--------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 529 ERHIQTALATLSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESG 573
++ + L++ T+++ H++ + + D +++ ++G V G
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 77.3 bits (190), Expect = 1e-14
Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 21/238 (8%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ ++ Y H + KG+S + ++IG SG GKST + + L G I +
Sbjct: 7 LEVEDLHKRYGEHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65
Query: 417 DGQDIKKITK-------------ESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQE 462
+G++I+ + LR +G++ Q L++ T+ N++ +
Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125
Query: 463 LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
A+E A+ ++ K+ G LSGG++QRV+IARA+ P +++FDE TS
Sbjct: 126 KAEAIERAE--KYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181
Query: 523 SLDIITERHIQTALATLSKN-RTTLVIAHRLSTITDADNIIVF-DQGTVVESGSHENL 578
+LD + + L++ RT +V+ H + D + ++F QG + E G E +
Sbjct: 182 ALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 76.0 bits (187), Expect = 3e-14
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 50/210 (23%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S + + K +SFEI P + + G SG GKS++ + L L+ G I +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
+ + +PQ L TLR ++Y
Sbjct: 61 PEGE-----------DLLFLPQRPYLPLGTLREQLIY----------------------- 86
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
P +D V LSGGE+QR++ AR +L P + DEATS+LD +E +
Sbjct: 87 ---P--WDDV-------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL---Y 131
Query: 537 ATLSKNRTTLV-IAHRLSTITDADNIIVFD 565
L + T++ + HR S D ++ D
Sbjct: 132 QLLKELGITVISVGHRPSLWKFHDRVLDLD 161
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 73.4 bits (180), Expect = 2e-13
Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 29/238 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ V+ S+ + ISFE+ P + L+G +G GK+T +++ L + G IT
Sbjct: 3 LEIEGVTKSFGDKKAVD-NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW 61
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYGNPNASDQELCAAVEVA 470
+G + + K IG +P++ L+ D L+Y L G P A Q+
Sbjct: 62 NGGPLSQEIK----NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-------- 109
Query: 471 QLKSFIMKLPNGYDTVVGERGLK---LSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
+L++++ +L +VG++ K LS G +Q++ A++ P ++I DE S LD +
Sbjct: 110 KLQAWLERL-----EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164
Query: 528 TERHIQTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQGG 583
++ A+ L + T++ + HR+ + + D +++ +G V G+ E++ G
Sbjct: 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 73.3 bits (180), Expect = 2e-13
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
K ISFEI ++ +IG +G GKST+ KL+ +Y G + + G + + +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPLIELG--- 97
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
G P+ T N LR IL D+++ +E A+L FI + Y
Sbjct: 98 -AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTY-------- 148
Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS----KNRTTLV 547
S G R++ + A P I++ DE + D + L L+ KN+T ++
Sbjct: 149 ---SSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKCLERLNELVEKNKTIVL 202
Query: 548 IAHRLSTITDA-DNIIVFDQGTVVESGSHENLISQ 581
++H L I D I + G + GS E +I
Sbjct: 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 73.1 bits (179), Expect = 2e-13
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 50/232 (21%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I+ NVSF Y+ + I+K ++F I + AL+G +G GKST+ KL+
Sbjct: 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLIT------------ 437
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
D++ R + +P RYN + ++Q ++ + L+ +
Sbjct: 438 --GDLQPTIGMVSRHSHNKLP----------RYNQ-----HLAEQ---LDLDKSSLEFMM 477
Query: 477 MKLPNGYD-----TVVGERGLK----------LSGGEKQRVSIARAILKNPPIIIFDEAT 521
K P+ + +++G GL LS G+++RV AR +K P +++ DE T
Sbjct: 478 PKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537
Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572
+ LDI T + A+ ++++H I+ A+ I V + GTV +
Sbjct: 538 NHLDIETIDALAEAIN--EFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587
Score = 61.9 bits (150), Expect = 5e-10
Identities = 53/273 (19%), Positives = 98/273 (35%), Gaps = 51/273 (18%)
Query: 346 NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYR 405
S+D+KI++ +S S+ H + K ++ E+ ++ LIG +G GKST + +
Sbjct: 72 ISRDVKIES-------LSLSF-HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG 123
Query: 406 ----------LYDIKGGIITIDGQDIKKI--TKESLRQTIGIIPQDTILFND-------- 445
Y + I + Q ++ + + R+ + + +D D
Sbjct: 124 REVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183
Query: 446 -TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
N + + L K LSGG + R ++
Sbjct: 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD-----------LSGGWRMRAAL 232
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIV 563
ARA+ + P +++ DE T+ LD+ ++ LA ++++H + NII
Sbjct: 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRIILVIVSHSQDFLNGVCTNIIH 291
Query: 564 FDQGTVVESGSHENLISQGGIYTSMWKKQCESI 596
D LI G Y K + E
Sbjct: 292 LDNK---------KLIYYEGNYDQYVKTRSELE 315
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 72.8 bits (179), Expect = 2e-13
Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQ 431
+ +SFE+ + + G G G++ +A+ L+ L G IT+DG+ + + ++++R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 432 TIGIIPQDT----ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
I +P+D ++ + ++ NI L S
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA-------------------LSSL------------ 104
Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS-KNRTTL 546
LSGG +Q+V +AR + ++P ++I DE T +D+ + I + L+ + L
Sbjct: 105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 547 VIAHRLSTITD-ADNIIVFDQGTV 569
+I+ L + D I+V +G +
Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 71.4 bits (175), Expect = 7e-13
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 19/277 (6%)
Query: 319 RDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISF 378
R R IE + L + ++ ++ + + I K IS
Sbjct: 77 RIDRVELPTIEVRFSALGVEADVTYGPTLVNILSNPLESILRMLGKRKKKKIQILKDISG 136
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQDIKKITKESLRQTIGI 435
I P + T ++G G GK+T+ K L D G IT +G D+K+ ++T+
Sbjct: 137 IIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAY 193
Query: 436 IPQDTILF-----NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVV 487
+ + F +TL + P + E+ ++A + +++K L + DT+V
Sbjct: 194 NSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLV 253
Query: 488 GERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRT 544
G ++ +SGGE++RVSI ++ I+ +DE T LD T I AL L+ T
Sbjct: 254 GNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGAT 313
Query: 545 TLVIAHRLS--TITDADNIIVFDQGTVVESGSHENLI 579
LV + S D++I+ +G + G + ++
Sbjct: 314 ALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350
Score = 70.3 bits (172), Expect = 2e-12
Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 37/279 (13%)
Query: 263 WLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDS- 321
W NFG L F++ +I+ ++ L AI + G +
Sbjct: 705 WRNFGILLGFTVFFNFVFLIALE-------------YLKPLKKSGAILVFKKGKEKKKVK 751
Query: 322 RQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHI-VFNNVSFSYNHHNC---IFKGIS 377
E L+ + + + + + L + + + ++ + + +S
Sbjct: 752 SAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVS 811
Query: 378 FEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT----IDGQDIKKITKESLRQTI 433
P TAL+GESG GK+T+ +L GG I I G +E+ +
Sbjct: 812 GAFKPGVLTALMGESGAGKTTLLDVLAG--RKTGGYIEGDILISGF---PKDQETFARVS 866
Query: 434 GIIPQD-----TILFNDTLRYN-ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
G + Q + ++LR++ L SD+E VE +++L D +V
Sbjct: 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEV---IELLELKEYADALV 923
Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIF-DEATSSLD 525
G G LS +++R++I ++ NP I+F DE TS LD
Sbjct: 924 GLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 69.9 bits (171), Expect = 2e-12
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
KGISF I + IG +G GK+T K+L L G + + G K K+ LR+ I
Sbjct: 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR-I 96
Query: 434 GII------------PQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
G++ D+ + Y++ EL +++ + ++ P
Sbjct: 97 GVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEE----LLDTPV 151
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
+LS G++ R IA A+L P I+ DE T LD++ + +I+ L ++
Sbjct: 152 ----------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 542 NRTTLVI--AHRLSTITD-ADNIIVFDQGTVVESG 573
R T V+ +H + I A ++V D+G ++ G
Sbjct: 202 ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 69.2 bits (169), Expect = 3e-12
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST----VAKLLYRLYDIK 410
G + NVS C+ ++F IA + L+G SG GKST + L +
Sbjct: 1 GMLCLKNVSLRLPGS-CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59
Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYGNP-----NASDQELC 464
G + ++ Q + + ++ IGI+ QD +LF ++ N+L+ P NA
Sbjct: 60 GELW-LNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN 116
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
AA+E + L + P LSGG++ RV++ RA+L P ++ DE S L
Sbjct: 117 AALERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRL 165
Query: 525 DI 526
D+
Sbjct: 166 DV 167
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 68.4 bits (167), Expect = 6e-12
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 44/229 (19%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI---DGQDIKKIT-KES 428
+ +SF++ P + ++GESG GK+T+ K + G +T DGQ T E+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 429 LRQTI-----GIIPQDTILFNDTLRYNIL----------------YGNPNASDQELCAAV 467
R+ + G + Q+ D LR + YGN A Q+ V
Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
E+ + I LP + SGG +QR+ IAR ++ P ++ DE T LD+
Sbjct: 139 EIDLDR--IDDLPRTF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 185
Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTIT-DADNIIVFDQGTVVESG 573
+ + L L + +++ H L+ AD ++V QG VVESG
Sbjct: 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 67.3 bits (164), Expect = 1e-11
Identities = 109/512 (21%), Positives = 205/512 (40%), Gaps = 81/512 (15%)
Query: 115 QVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRII---VVHLIPTILEFAISMAF 171
++ H Y + YKV L S I N S+ I V HL + + + +
Sbjct: 191 RLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLIL 250
Query: 172 LWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHE----------CHAKVF 221
+ ++ D S+ A + L +T+ +S K L+ E H+ +
Sbjct: 251 ISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNI- 309
Query: 222 DTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNF-----------GQGL 270
+ N E I ++ K E+ ++++ ++ E + W G GL
Sbjct: 310 --ITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGL 367
Query: 271 IF-SIGMVITMIISSHAVYIGEQTVG---DFVFINTLLTQLAIPLNILGTIYRDSRQ--- 323
+ SI ++ + + S + + E+ +F+ LL A + L + Y++ Q
Sbjct: 368 VMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAG 427
Query: 324 SFIEIEELLNILNE-------------------KIEIQNAVN-SKDLKIKNGH-IVFNNV 362
+ + ++L++ E +N+ I+N + I+ N+
Sbjct: 428 YTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENI 487
Query: 363 SFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK 422
+ + ++F+I P + G +G GKS++ ++L L+ + G+++I
Sbjct: 488 PVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------ 541
Query: 423 KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA---------SDQELCAAVEVAQLK 473
I IPQ + TLR I+Y P++ +DQ+L A +++ L+
Sbjct: 542 -----PRPNNIFYIPQRPYMSGGTLRDQIIY--PDSSEQMKRKGYTDQDLEAILDIVHLE 594
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
I++ G+D V + + LSGGEKQR+ +AR P + DE TS++ I E I
Sbjct: 595 -HILQREGGWDAVRDWKDV-LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIF 652
Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFD 565
A + L I HR S +++ FD
Sbjct: 653 QAAKDAGIS--LLSITHRPSLWKYHTHLLEFD 682
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 66.7 bits (163), Expect = 2e-11
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 18/204 (8%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
K +SFE+ ++ LIG +G GKST+ +LL +Y G +T+ G+ L
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-----SSLLGL 91
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
G P+ T N L +L + D+++ +E ++L FI D V
Sbjct: 92 GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLPVKT-- 142
Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA-H 550
S G K R++ A A P I++ DE + D + Q L L K T+++ H
Sbjct: 143 --YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200
Query: 551 RLSTITD-ADNIIVFDQGTVVESG 573
S+I D +V ++G + G
Sbjct: 201 DPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 65.7 bits (160), Expect = 4e-11
Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 36/197 (18%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI--DGQDIKKITKESL 429
+ + +S + + L G SG GKST+ + LY Y G I + +G+ + +T E
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 430 ------RQTIG-------IIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
R TIG +IP+ + L D + +L AA + +L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGVPREVARAKAADLLTRLN--- 140
Query: 477 MKLPNGYDTVVGERGLKL-----SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
+ ER L SGGE+QRV+IAR + + PI++ DE T+SLD T R
Sbjct: 141 ----------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD-ATNRA 189
Query: 532 IQTALATLSKNRTTLVI 548
+ L +K R ++
Sbjct: 190 VVVELIREAKARGAALV 206
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 64.9 bits (158), Expect = 6e-11
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
I+ S+ ++G +G+GK+T K+L G++ D DI E T+ PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKML-------AGVLKPDEGDI-----EIELDTVSYKPQ 68
Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
+ ++L K+ I K P + ++ +LSGGE
Sbjct: 69 YIKADYEGTVRDLLSSITKDF-------YTHPYFKTEIAK-PLQIEQILDREVPELSGGE 120
Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTIT 556
QRV+IA + K+ I + DE ++ LD+ + + +T V+ H + I
Sbjct: 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180
Query: 557 D-ADNIIVFD 565
AD +IVF+
Sbjct: 181 YLADRLIVFE 190
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 64.6 bits (157), Expect = 6e-11
Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLL--------------YRLYDIKGGIIT----- 415
+S + + L+GESG GKS +AK + R DI ++
Sbjct: 25 RVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84
Query: 416 -IDGQDIKKITKESL----------RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464
+ G ++ I +E RQ I IP T R+ +G EL
Sbjct: 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTY----KGRWWQRFGWRKRRAIELL 140
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
V + K + P +L+ GE Q+V IA A+ P ++I DE T+S+
Sbjct: 141 HRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSM 189
Query: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
+ T+ I L+ L++N T L+I+H L I+ AD I V G VES E L++
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 64.7 bits (158), Expect = 7e-11
Identities = 71/253 (28%), Positives = 107/253 (42%), Gaps = 41/253 (16%)
Query: 346 NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL-- 403
N L+IKN H N N I KG++ I + A++G +G GKST++K++
Sbjct: 4 NKPILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
Query: 404 YRLYDIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFN-DTLR--YN- 450
+ Y I G I G+ I + E R +GI IP + N D LR YN
Sbjct: 56 HPAYKILEGDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIPGVS---NADFLRLAYNS 111
Query: 451 --ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK--LSGGEKQRVSIAR 506
G P +E ++ + +KL D R + SGGEK+R I +
Sbjct: 112 KRKFQGLPELD------PLEFLEIINEKLKLVG-MDPSFLSRNVNEGFSGGEKKRNEILQ 164
Query: 507 AILKNPPIIIFDEATSSLDIITERHIQTALATLS-KNRTTLVIAH--RLSTITDADNIIV 563
L + + I DE S LDI + I + L + ++I H RL D + V
Sbjct: 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV 224
Query: 564 FDQGTVVESGSHE 576
G ++++G E
Sbjct: 225 MQNGKIIKTGDAE 237
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 63.2 bits (153), Expect = 2e-10
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 45/221 (20%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
++V+F Y +FK + F I + A++G +GVGKST+ KLL G + DG+
Sbjct: 590 HDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLI------GKLDPNDGE 643
Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479
+++ R IG ++ ++ VE Q K L
Sbjct: 644 -----LRKNHRLRIG-------------WFDQHANEALNGEE---TPVEYLQRK---FNL 679
Query: 480 P-NGYDTVVGERGL----------KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
P +G GL LSGG+K RV++A L P ++I DE T++LDI
Sbjct: 680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI-- 737
Query: 529 ERHIQTALATLSKNRTTLVIAH--RLSTITDADNIIVFDQG 567
E A A N ++++H RL TD + +V +QG
Sbjct: 738 ESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQG 778
Score = 52.0 bits (124), Expect = 4e-07
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 47/246 (19%)
Query: 346 NSKDLKIKNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAK-LL 403
N+ D+KI+N F + +F S I ++ L+G +G+GK+T+ K +
Sbjct: 261 NAMDIKIEN---------FDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA 311
Query: 404 YRLYDIKGGI-ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNIL---------- 452
R I I + + Q++ + ++ DT+L D R +L
Sbjct: 312 ARALAIPPNIDVLLCEQEVVADSTSAI---------DTVLKADKKRLALLEEEAKLMSQI 362
Query: 453 -YGNPNASDQ---------ELCAAVEVAQLKSFIMKLPNGYDTVVGERGL-KLSGGEKQR 501
G+ A+++ + A A+ + + L G+ + ER K SGG + R
Sbjct: 363 EEGDTTAAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTKFSGGWRMR 420
Query: 502 VSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA-DN 560
VS+ARA+ P +++ DE T+ LD+ + L K T L+++H + +
Sbjct: 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQGFLDSVCTD 478
Query: 561 IIVFDQ 566
II D
Sbjct: 479 IIHLDN 484
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 62.9 bits (153), Expect = 3e-10
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 35/209 (16%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG---GIITIDGQDIKKITKES 428
I K S + P + ++G G G ST+ K L + G I +G K+ +
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE-- 79
Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
I++ + D + V + F ++ G + V G
Sbjct: 80 -------KYPGEIIYV------------SEEDVHF-PTLTVRETLDFALRC-KGNEFVRG 118
Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTL 546
+SGGE++RVSIA A++ ++ +D +T LD T I + T++ TT
Sbjct: 119 -----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173
Query: 547 VIAHRLS-TITDA-DNIIVFDQGTVVESG 573
V ++ S I D D ++V +G + G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 60.6 bits (147), Expect = 1e-09
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 35/195 (17%)
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
EI + ++G +G+GK+T KLL G+I D + + Q I
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415
Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVVGERGLKLS 495
T+ ++L + A + K+ I+K L + + V E LS
Sbjct: 416 GTV-------EDLLRSAIRS-------AFGSSYFKTEIVKPLNLEDLLERPVDE----LS 457
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA----TLSKNRTTLVIAHR 551
GGE QRV+IA A+ + + + DE ++ LD+ E+ I A + +T LV+ H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDV--EQRIIVAKVIRRFIENNEKTALVVDHD 515
Query: 552 LSTITD-ADNIIVFD 565
+ I +D +IVF+
Sbjct: 516 IYMIDYVSDRLIVFE 530
Score = 56.8 bits (137), Expect = 2e-08
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES-LRQTIGIIPQD- 439
P K ++G +G+GKST K+L G + G+ + + +++ G Q+
Sbjct: 99 PGKVVGILGPNGIGKSTALKIL------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152
Query: 440 -TILFNDTLR--YNILYGN--PNASDQE----LCAAVEVAQLKSFIMKLPNGYDTVVGER 490
L+ LR + Y + P + L E + + +L G + V+
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLENVLDRD 210
Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-RTTLVIA 549
+LSGGE QRV+IA A+L++ + FDE +S LDI + + L+++ + +V+
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVE 270
Query: 550 HRLSTI 555
H L+ +
Sbjct: 271 HDLAVL 276
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 60.4 bits (146), Expect = 1e-09
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+F G+SF +A + + G +G GK+T+ ++L L G + ++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
+ + I ++ N+ + + + SD+++ A+ L F P
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVAQ-------- 125
Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
LS G+++RV++AR +L P+ I DE T++LD A+A
Sbjct: 126 --LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 59.9 bits (145), Expect = 2e-09
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 24/164 (14%)
Query: 370 NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
+F +SF + + + G +G GK+T+ ++L L G + G+ I+ + +ES
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESY 73
Query: 430 RQTI-------GIIPQDTILFNDTLR-YNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
Q + GI + T L N L + +G+ NA+ + A+ L LP
Sbjct: 74 HQALLYLGHQPGIKTELTALEN--LHFWQRFHGSGNAAT--IWEALAQVGLAGLE-DLPV 128
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
G LS G+++RV++AR L P+ I DE ++LD
Sbjct: 129 GQ----------LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 59.9 bits (145), Expect = 2e-09
Identities = 68/317 (21%), Positives = 112/317 (35%), Gaps = 71/317 (22%)
Query: 243 LEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSH----AVYIG-------- 290
LE Y+ +K +++ V+ +LN V T II Y G
Sbjct: 237 LENYLQTWKITSLIVSHDRNFLN----------TVCTDIIHLENLKLDYYKGNYSQFVKT 286
Query: 291 ---EQTVGDFVFINTLLTQLAIPLNILGTIYRDSR----QSFIEIEELLNILNE---KIE 340
+ F + + + + I Y +R QS I++ L L ++
Sbjct: 287 KPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVL 346
Query: 341 IQNAVNSKDLKIKNGHIVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTV 399
I ++ + ++ + V+F Y K + + + + +GE+G GKST+
Sbjct: 347 IGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTL 406
Query: 400 AKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNAS 459
K I+ D + I R I Q + D L N+
Sbjct: 407 LK-----------ILKGDLTPTRGIVGRHPRLRIKYFAQHHV---DFLDKNV-------- 444
Query: 460 DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK----------LSGGEKQRVSIARAIL 509
AV+ + KSF K +G GL LSGG+K RV+ A
Sbjct: 445 -----NAVDFME-KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW 498
Query: 510 KNPPIIIFDEATSSLDI 526
NP +++ DE T+ LD
Sbjct: 499 NNPHLLVLDEPTNHLDR 515
Score = 54.6 bits (131), Expect = 7e-08
Identities = 43/199 (21%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
K+ I +N +Y + + ++ ++ L+G +G+GKST+ + +
Sbjct: 77 KSKDIHIDNFDLAYGGKI-LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------- 128
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
+ E + ++L +DT R + L A ++EL A + + ++
Sbjct: 129 ------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFL-----AEEKELLAGLTLEEI 177
Query: 473 KSFIMKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
I+ G+ + + K LSGG + R+++ARA+ P +++ DE T+ LD++
Sbjct: 178 YDKILA-GLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW 236
Query: 532 IQTALATLSKNRTTLVIAH 550
++ L T T+L+++H
Sbjct: 237 LENYLQTWKI--TSLIVSH 253
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 58.5 bits (141), Expect = 5e-09
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 25/218 (11%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL-RQTIG 434
+S E+ + L+G +G GKST+ + + G I GQ ++ + L R
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQ-FAGQPLEAWSATELARHRAY 76
Query: 435 IIPQDTILFN-DTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGL 492
+ Q T F Y L+ D+ + +VA + KL +
Sbjct: 77 LSQQQTPPFAMPVWHYLTLH----QPDKTRTELLNDVAGALALDDKLGRSTN-------- 124
Query: 493 KLSGGEKQRVSIARAILK-----NPP--IIIFDEATSSLDIITERHIQTALATLSKNRTT 545
+LSGGE QRV +A +L+ NP +++ DE +SLD+ + + L+ L +
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLA 184
Query: 546 LVIA-HRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
+V++ H L+ T+ A + +G ++ SG E +++
Sbjct: 185 IVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 55.8 bits (134), Expect = 3e-08
Identities = 35/179 (19%), Positives = 77/179 (43%), Gaps = 7/179 (3%)
Query: 351 KIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
+ + I + + F Y + IF + ++ + L+G +G GK+T+ K+L + +
Sbjct: 8 AVSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG 67
Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
GG++ + G+ SL + + + + S + + V
Sbjct: 68 GGVVQVLGRS--AFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD 125
Query: 471 --QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
+ + ++ + D + R K+S G+++RV I +LK +++ DE T LD++
Sbjct: 126 DPERREKLIDI---LDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVL 181
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 54.6 bits (131), Expect = 7e-08
Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 18/206 (8%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ + ++ EI P A++G+SG GK+T+ +++ +G ++ K ++
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
I + L + L +L AAVE+ ++ + D V+ R
Sbjct: 458 LIPGEYEPEFGEVTILEH--LRSKTG----DLNAAVEILN-RAGLS------DAVLYRRK 504
Query: 492 L-KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT-TLVIA 549
+LS G+K+R +A+ + + P +++ DE + LD +T + ++ L++ TL++
Sbjct: 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564
Query: 550 HRLSTITDA---DNIIVFDQGTVVES 572
+ +A D +I+ G V +
Sbjct: 565 THRPEVGNALRPDTLILVGYGKVPVN 590
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 54.9 bits (132), Expect = 7e-08
Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 55/216 (25%)
Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK 426
N HN + + I + + G SG GKST+ + + K
Sbjct: 7 NVHN--LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------------EGLYASGK 47
Query: 427 ESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
L + ++ ++F D L F++ + GY T+
Sbjct: 48 ARLISFLPKFSRNKLIFIDQL--------------------------QFLIDVGLGYLTL 81
Query: 487 VGERGLKLSGGEKQRVSIARAILKNPP--IIIFDEATSSLDIITERHIQTALATL-SKNR 543
G++ LSGGE QRV +A + PP + I DE ++ L + + L
Sbjct: 82 -GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
Query: 544 TTLVIAHRLSTITDADNIIVF------DQGTVVESG 573
T ++I H L ++ AD II F G VV SG
Sbjct: 141 TVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 54.6 bits (131), Expect = 8e-08
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 480 PNGYDT-------VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
PNG + V + + LSGGE QRV+IA A+L+N +FDE ++ LDI +
Sbjct: 51 PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110
Query: 533 QTALATLSKN--RTTLVIAHRLSTITD-ADNIIVFD 565
A+ LS+ +T LV+ H L+ + +D I VF+
Sbjct: 111 ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 54.0 bits (130), Expect = 1e-07
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 494 LSGGEKQRVSIARAILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIA 549
LSGGE QRV +A+ + K + I DE T+ L + + L L K T +VI
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 550 HRLSTITDADNIIVF------DQGTVVESGSHENLISQGGIYTSMWKKQ 592
H L I AD II G +V SG+ E + YT + K+
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931
Score = 39.4 bits (92), Expect = 0.003
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 494 LSGGEKQRVSIARAILKN--PPIIIFDEATSSLDIITERHIQTALATLSKNR----TTLV 547
LSGGE QR+ +A I + + DE + L +R + + TL + R T +V
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH---QRDNERLIETLKRLRDLGNTVIV 538
Query: 548 IAHRLSTITDADNII-------VFDQGTVVESGSHENLI----SQGGIYTS 587
+ H TI AD+II G +V G+ E L+ S G Y S
Sbjct: 539 VEHDEDTIRAADHIIDIGPGAGEHG-GEIVAEGTPEELLANPESLTGQYLS 588
Score = 27.8 bits (62), Expect = 9.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA 400
HN K I EI +K + G SG GKS++A
Sbjct: 14 HN--LKNIDLEIPRNKLVVITGLSGSGKSSLA 43
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 52.9 bits (127), Expect = 2e-07
Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 48/240 (20%)
Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKST---------VAKLLYRLYDIKGGIITID 417
+N K I +I T + G SG GKS+ +A+ L+ + G I+
Sbjct: 7 RENN--LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIE 64
Query: 418 G-QDIKKITKESLRQTIGIIPQ----------DTI--LFNDTL---RYN-----ILYGNP 456
G + I K+ + IG P+ D I LF + RYN + Y
Sbjct: 65 GLEHIDKVIVID-QSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGK 123
Query: 457 NASD---QELCAAVE-------VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506
+ +D + A+E +A+ + + GY + G+ LSGGE QR+ +A+
Sbjct: 124 SIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKL-GQPATTLSGGEAQRIKLAK 182
Query: 507 AILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNII 562
+ K + I DE T+ L + + L L K T +VI H L I AD II
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 52.4 bits (126), Expect = 4e-07
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRL 552
+LSGGEK R+++A+ +L+NP +++ DE T+ LD+ + ++ AL T ++++H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127
Query: 553 STITD-ADNIIVFDQGT 568
+ A II + G
Sbjct: 128 YFLDQVATKIIELEDGK 144
Score = 45.8 bits (109), Expect = 4e-05
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLY-RLYDIKGGIIT 415
I N+S +Y + K IS I P + L+G +G GKST+ KL+ L +G +
Sbjct: 1 IELENLSKTYGGKL-LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 416 IDGQDI 421
I
Sbjct: 60 GSTVKI 65
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 51.0 bits (122), Expect = 1e-06
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKGGIITIDGQDIKKITKESL 429
+ IS + P TAL+GESG GK+T+ +L + + G I I+G+ + K +
Sbjct: 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NF 77
Query: 430 RQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
+++ G + Q + N T+R + + A L
Sbjct: 78 QRSTGYVEQQDVHSPNLTVREALRFS---------------ALL---------------- 106
Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-RTTLV 547
RGL + +++R++I + P I+ DE TS LD +I L L+ + + L
Sbjct: 107 -RGLSVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163
Query: 548 IAHRLS--TITDADNIIVFDQG 567
H+ S D +++ +G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 50.7 bits (121), Expect = 1e-06
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 48/200 (24%)
Query: 382 PSKKTALIGESGVGKSTVAKLL-----------------------YRLYDIKGGIITIDG 418
P + L+G +G+GKST K+L +R +++ I
Sbjct: 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158
Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
++K I K Q + IP+ T+ + + + +E+C +++ L
Sbjct: 159 DNLKAIIKP---QYVDQIPR---AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLL----- 207
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL-- 536
D V + LSGGE QR +IA ++ + +FDE +S LD+ ++ ++ A+
Sbjct: 208 -----DREVEQ----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV--KQRLKAAITI 256
Query: 537 -ATLSKNRTTLVIAHRLSTI 555
+ ++ +R +V+ H LS +
Sbjct: 257 RSLINPDRYIIVVEHDLSVL 276
Score = 39.5 bits (92), Expect = 0.003
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTL 447
++GE+G GK+T ++L G + D + S + I P+ L
Sbjct: 372 MLGENGTGKTTFIRML-------AGRLKPDEGGEIPVLNVSYK-PQKISPKREGTVRQLL 423
Query: 448 RYNI--LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIA 505
I Y +P Q + +MK P + ++ + LSGGE QRV++A
Sbjct: 424 HTKIRDAYMHP--------------QFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALA 468
Query: 506 RAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTITD-ADNII 562
+ K + + DE ++ LD + L +T V+ H T AD +I
Sbjct: 469 LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528
Query: 563 VFD 565
VF+
Sbjct: 529 VFE 531
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 48.3 bits (115), Expect = 6e-06
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 49/208 (23%)
Query: 381 APSKKTALIGESGVGKSTVAKLL-----------------------YRLYDIKGGIITID 417
+ L+G +G+GKST K+L +R +++ +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
D+K I K Q + +IP+ + + + EL +E+ +
Sbjct: 84 EGDVKVIVKP---QYVDLIPKA---VKGKVGELLKKKDERGKLDELVDQLELRHVL---- 133
Query: 478 KLPNGYDTVVGERGL-KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
+R + +LSGGE QRV+IA A+ ++ FDE +S LDI + +
Sbjct: 134 -----------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182
Query: 537 ATLSKN-RTTLVIAHRLSTITD--ADNI 561
L+++ LV+ H L+ + D +D I
Sbjct: 183 RELAEDDNYVLVVEHDLA-VLDYLSDYI 209
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 47.2 bits (112), Expect = 1e-05
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 35/220 (15%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ-DIKKITKESLR---- 430
+SF + P + LIG +G GK+T+ ++ + G + DG D+ K+ + +
Sbjct: 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83
Query: 431 ----QTIGIIPQDTILFNDTLRYNI-----------LYGNPNASDQELCAAVEVAQLKSF 475
Q + T+ N L N L EL A + + +
Sbjct: 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR 143
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
+ L LS G+KQ + I + ++P +++ DE + +
Sbjct: 144 LAAL--------------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAEL 189
Query: 536 LATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
L +L+ + LV+ H + + + AD + V +G+V+ GS
Sbjct: 190 LKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 46.6 bits (110), Expect = 2e-05
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 494 LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
LSGGEK ++A AI K P P + DE ++LD + + +SK +VI
Sbjct: 1067 LSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126
Query: 550 HRLSTITDADNII 562
HR T+ AD ++
Sbjct: 1127 HRKGTMEAADRLV 1139
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 43.5 bits (103), Expect = 2e-04
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 494 LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
LSGGEK ++A AI + P P + DE ++LD L SK +VI
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173
Query: 550 HRLSTITDADNII 562
HR T+ AD +
Sbjct: 174 HRKGTMEAADRLY 186
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 41.3 bits (97), Expect = 7e-04
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 53/235 (22%)
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLY----RLYD------IKGGIITID 417
HN K + +I +K + G SG GKS++A +Y R Y + + +D
Sbjct: 9 HN--LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMD 66
Query: 418 GQDIKKI-------------TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464
D+ I T + R T+G + + D LR +L+
Sbjct: 67 KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTE----IYDYLR--LLF----------- 109
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN--PPIIIFDEATS 522
A V + + F++ + GY T+ LSGGE QR+ +A I + + DE +
Sbjct: 110 ARVGIRERLGFLVDVGLGYLTLSRSAP-TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168
Query: 523 SLDIITERHIQTALATLSKNR----TTLVIAHRLSTITDADNIIVFDQGTVVESG 573
L R + TL + R T LV+ H TI AD++I G V G
Sbjct: 169 GLH---PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGG 220
>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 39.2 bits (91), Expect = 0.003
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 494 LSGGEKQRVSIA--RAILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTT---- 545
LSGGEK V++A AI K P P + DE ++LD ++++ +A K +
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALD---DQNVS-RVANYLKELSKNAQF 1134
Query: 546 LVIAHRLSTITDADNII 562
+VI+ R + AD ++
Sbjct: 1135 IVISLREEMLEKADRLV 1151
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 36.7 bits (85), Expect = 0.018
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 494 LSGGEKQ------RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL------SK 541
SGGEK R+++A N I+ DE T++LD E +I+ +LA + K
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQK 172
Query: 542 NRTTLVIAHRLSTITDADNII 562
N +VI H + AD+I
Sbjct: 173 NFQLIVITHDEELVDAADHIY 193
>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 36.2 bits (85), Expect = 0.030
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406
+AP+ T LI GESG GK A+ +++L
Sbjct: 18 VAPTDATVLITGESGTGKELFARAIHQL 45
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 35.3 bits (81), Expect = 0.047
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 492 LKLSGGEKQRVSIARAI----LKNPPIIIFDEATSSLDIITERHIQTALA-TLSKNRTTL 546
L+LSGGEK+ ++A + LK P+ I DE LD + + A+ L K +
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 547 VIAHRLSTITDADNII 562
VI H AD +I
Sbjct: 136 VITHLPELAELADKLI 151
>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 276
Score = 35.2 bits (81), Expect = 0.054
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 494 LSGGEKQRVSIA-RAIL---KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
SGGE R+ +A +AIL P +IFDE + + + + L LS++ L I
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCIT 230
Query: 550 H 550
H
Sbjct: 231 H 231
>gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 34.6 bits (79), Expect = 0.085
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
FI LP G DT G SG I AI ++ DE TS+ +++
Sbjct: 303 FINHLPGGKDTPDFVTGDA-SGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLL 354
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.3 bits (78), Expect = 0.100
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 494 LSGGEKQRVSIARAI--------LKNPPIIIFDEATSSLDIITERHIQTALATL----SK 541
LSGGE+ S+A + ++ DE +LD E ++ L S
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLD---EERLEKLAEILEELLSD 872
Query: 542 NRTTLVIAH 550
R ++I+H
Sbjct: 873 GRQIIIISH 881
>gnl|CDD|36349 KOG1134, KOG1134, KOG1134, Uncharacterized conserved protein
[General function prediction only].
Length = 728
Score = 34.2 bits (78), Expect = 0.10
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 8 SLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKW-------VTESLI 60
+L L K++P++ P +I +A + +P L++ ++ S
Sbjct: 386 NLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEE 445
Query: 61 EQSTASKTTSYLTIGIVILITSYGT-MRVVNLISNHIRDF 99
E+S +K +L + + +++T G+ +R + I + R
Sbjct: 446 ERSALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTPRLI 485
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 33.4 bits (76), Expect = 0.19
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 382 PSKKTALIGESGVGKST-VAKLLYRLYDIKG----GIITID 417
+ AL+G +GVGK+T +AKL R +K IIT D
Sbjct: 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD 242
>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
ATPase, and DNA binding domains [Transcription / Signal
transduction mechanisms].
Length = 550
Score = 33.0 bits (75), Expect = 0.26
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406
+A S T LI GE+G GK VA+ +++L
Sbjct: 242 VAKSDSTVLIRGETGTGKELVARAIHQL 269
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.0 bits (72), Expect = 0.49
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 282 ISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEI 341
+ AV + F + + ++ L I QS + L +I+I
Sbjct: 369 LFEEAVDCFGAFIPHFRSLLKIKKRMGSSLGIGVEERLRLYQSVPNVLNL----KHEIDI 424
Query: 342 QNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAK 401
+K +I + N+ +F+ + + + + + I ++ T L+GE+G GK+T+ +
Sbjct: 425 GRCALTK-TEIPIISLSGNSFAFT-SCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQ 482
Query: 402 LLYRLYDIKGGIITIDGQ 419
L K +I Q
Sbjct: 483 YLALKLHFKLTVINKSQQ 500
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 31.8 bits (72), Expect = 0.54
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406
+APS + LI GESG GK VA+ +++
Sbjct: 160 VAPSDASVLITGESGTGKELVARAIHQA 187
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 31.9 bits (72), Expect = 0.57
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
+ + I+ + ++ L+GE+GVGK++V + L L K ++
Sbjct: 49 RSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVV 96
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 31.7 bits (72), Expect = 0.59
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 382 PSKKTALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIKKITKE 427
+ LIG G GKST+ + L D I G I +I +E
Sbjct: 1 RNMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEE 51
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 31.3 bits (71), Expect = 0.78
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKES 428
L G G GK+T+A+ + L+ + ++ D+ + +
Sbjct: 24 LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65
>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 567
Score = 31.4 bits (71), Expect = 0.79
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 510 KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT-LVIAHRLSTITD 557
++ I++ DEA LD+ E + T L+ L K R T L A + + D
Sbjct: 156 RSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVED 204
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 31.3 bits (71), Expect = 0.85
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 387 ALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIKKITKE 427
LIG G GK+TV +LL D+ I G I +I E
Sbjct: 3 VLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAE 48
>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 31.1 bits (70), Expect = 0.89
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLY 407
APS LI GE+G GK A+L++ L
Sbjct: 97 YAPSGLPVLIIGETGTGKELFARLIHALS 125
>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 30.9 bits (70), Expect = 0.98
Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 41/146 (28%)
Query: 387 ALIGESGVGKSTVAKLL--------------YRLYDIKGGIITIDGQDIKKITKESLRQT 432
A+ G +G GKSTVAK+L YR + +D D + +
Sbjct: 8 AIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELD 67
Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
I + D + N + EV S + +P + +V
Sbjct: 68 ISFVNDDRVFLNGEDVSEEIRTE------------EVGNAASKVAAIPEVREALV----- 110
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFD 518
+ Q RA KN P I+ D
Sbjct: 111 -----KLQ-----RAFAKNGPGIVAD 126
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 786
Score = 31.0 bits (70), Expect = 0.99
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKESLRQTIGIIP 437
+G +GVGK+ +AK L L+ + +I ID + + K S+ + IG P
Sbjct: 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSE--YMEKHSVSRLIGAPP 574
>gnl|CDD|31539 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion
transport and metabolism].
Length = 278
Score = 30.6 bits (69), Expect = 1.1
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
++ A+ G+ G+GKST ++ L G + I G D K +S R +G T+L
Sbjct: 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPK---ADSTRLLLGGKAIPTVL- 57
Query: 444 NDTLRYNILYGNPNASD 460
DTLR + D
Sbjct: 58 -DTLREKGEVEDLELED 73
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 384 KKTALIGESGVGKSTVAKLL 403
K + L+G+SGVGKST+ L
Sbjct: 162 KTSVLVGQSGVGKSTLINAL 181
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 30.2 bits (68), Expect = 1.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
++G SG GKSTV K L + G IDG D+
Sbjct: 4 VMGVSGSGKSTVGKALAE----RLGAPFIDGDDLHP 35
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 30.2 bits (69), Expect = 1.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 386 TALIGESGVGKST 398
+ L G+SGVGKST
Sbjct: 38 SVLAGQSGVGKST 50
>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 243
Score = 30.2 bits (68), Expect = 1.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 493 KLSGGEKQRVSIAR--AILK--NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
+LSGG+K V++A AI K P +FDE ++LD + + LS +
Sbjct: 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT 217
Query: 549 AHRLSTITDADNI 561
R + AD
Sbjct: 218 TFRPELLEVADKF 230
>gnl|CDD|36440 KOG1226, KOG1226, KOG1226, Integrin beta subunit (N-terminal
portion of extracellular region) [Signal transduction
mechanisms, Extracellular structures].
Length = 783
Score = 29.9 bits (67), Expect = 1.9
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 309 IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNH 368
IP + +G + DS I E N L+ K+ +++ + L + N VSF
Sbjct: 344 IPGSAVGVLSEDSSNIVQLIIEAYNSLSSKVILEDENQPEGLSLSYTSSCSNGVSFPGKR 403
Query: 369 HNC----IFKGISFEIAPSKK 385
C I ++FE++ + K
Sbjct: 404 RKCSGITIGDEVTFEVSVTAK 424
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 29.8 bits (67), Expect = 2.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDG-----QDIKKITKESLRQTIGIIPQDTIL 442
L G G GK+T+A+L+ + +D+++I +E+ R+ + + TIL
Sbjct: 53 LWGPPGTGKTTLARLIAG--TTNAAFEALSAVTSGVKDLREIIEEA-RKNRLLGRR-TIL 108
Query: 443 FNDTL-RYN 450
F D + R+N
Sbjct: 109 FLDEIHRFN 117
>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
permease component [Inorganic ion transport and
metabolism].
Length = 523
Score = 29.9 bits (67), Expect = 2.1
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 4 ARFPSLRTLKKLW----PYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESL 59
AR L L ++ P+ P +L + F + AS+ + +GI + SL
Sbjct: 114 ARNYRLSFLLRMARLYIPFAMPGIAANLMPSMSDGFFFITASEVITVGIHTYRLFGIGSL 173
Query: 60 IEQSTASKTTSYLTIGIVIL 79
+++ A + IG+ IL
Sbjct: 174 LDELLAIGQYNLAYIGLAIL 193
>gnl|CDD|32599 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 287
Score = 29.9 bits (67), Expect = 2.1
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGG-IITIDGQDIKKITK--ESLRQTIGIIPQ 438
P+ L G G GKS++ K L Y +G ++ +D +D+ + E LR P+
Sbjct: 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR----PE 139
Query: 439 DTILFNDTLRY 449
ILF D L +
Sbjct: 140 KFILFCDDLSF 150
>gnl|CDD|133310 cd04110, Rab35, Rab35 subfamily. Rab35 is one of several Rab
proteins to be found to participate in the regulation of
osteoclast cells in rats. In addition, Rab35 has been
identified as a protein that interacts with
nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in
human cells. Overexpression of NPM-ALK is a key
oncogenic event in some anaplastic large-cell lymphomas;
since Rab35 interacts with N|PM-ALK, it may provide a
target for cancer treatments. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 199
Score = 29.8 bits (67), Expect = 2.3
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 385 KTALIGESGVGKSTVAKLLYRLYD--IKGGIITIDGQDIK 422
K +IG+SGVGKS+ LL R D G IT G D K
Sbjct: 8 KLLIIGDSGVGKSS---LLLRFADNTFSGSYITTIGVDFK 44
>gnl|CDD|143965 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
dehydrogenase.
Length = 237
Score = 29.8 bits (68), Expect = 2.4
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 15/71 (21%)
Query: 373 FKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRL-------YDIKGGIITIDGQDIKKI 424
G S E KT + G VG S A+ L L D G I +G DI+++
Sbjct: 25 LGGDSLE----GKTVAVQGFGNVG-SYAAEKLLELGAKVVAVSDSSGYIYDPNGIDIEEL 79
Query: 425 T--KESLRQTI 433
KE +
Sbjct: 80 LELKEEGGGRV 90
>gnl|CDD|133271 cd01868, Rab11_like, Rab11-like. Rab11a, Rab11b, and Rab25 are
closely related, evolutionary conserved Rab proteins
that are differentially expressed. Rab11a is
ubiquitously synthesized, Rab11b is enriched in brain
and heart and Rab25 is only found in epithelia. Rab11/25
proteins seem to regulate recycling pathways from
endosomes to the plasma membrane and to the trans-Golgi
network. Furthermore, Rab11a is thought to function in
the histamine-induced fusion of tubulovesicles
containing H+, K+ ATPase with the plasma membrane in
gastric parietal cells and in insulin-stimulated
insertion of GLUT4 in the plasma membrane of
cardiomyocytes. Overexpression of Rab25 has recently
been observed in ovarian cancer and breast cancer, and
has been correlated with worsened outcomes in both
diseases. In addition, Rab25 overexpression has also
been observed in prostate cancer, transitional cell
carcinoma of the bladder, and invasive breast tumor
cells. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 165
Score = 29.4 bits (67), Expect = 2.5
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 17/52 (32%)
Query: 385 KTALIGESGVGKSTVAKLLYRL------YDIKGGI--------ITIDGQDIK 422
K LIG+SGVGKS LL R D K I I IDG+ IK
Sbjct: 5 KIVLIGDSGVGKS---NLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIK 53
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.5 bits (66), Expect = 2.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 379 EIAPSKKTALIGESGVGKST 398
E+ K T L+G+SGVGKST
Sbjct: 160 ELLAGKITVLLGQSGVGKST 179
>gnl|CDD|145830 pfam02881, SRP54_N, SRP54-type protein, helical bundle domain.
Length = 77
Score = 29.5 bits (67), Expect = 3.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
+ AL+ E+ VG T K++ RL ++ G D ++IKK KE L
Sbjct: 34 EEALL-EADVGVETTEKIIERLKELVGRKGLSDPEEIKKALKEEL 77
>gnl|CDD|35303 KOG0080, KOG0080, KOG0080, GTPase Rab18, small G protein
superfamily [General function prediction only].
Length = 209
Score = 29.2 bits (65), Expect = 3.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 17/60 (28%)
Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRL--------------YDIKGGIITIDGQDIK 422
S + K LIGESGVGKS+ LL R D K ++ +DG+ +K
Sbjct: 5 SSGYDTTFKILLIGESGVGKSS---LLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLK 61
>gnl|CDD|143853 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 29.4 bits (67), Expect = 3.1
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 21/54 (38%)
Query: 385 KTALIGESGVGKSTVAKLLYRL--------YD--------IKGGIITIDGQDIK 422
K L+G+ GVGKS+ LL R Y K I +DG+ +K
Sbjct: 1 KLVLVGDGGVGKSS---LLIRFTQNKFPEEYIPTIGVDFYTK--TIEVDGKTVK 49
>gnl|CDD|143913 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins,
NifH/frxC family.
Length = 269
Score = 29.3 bits (66), Expect = 3.3
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 384 KKTALIGESGVGKS-TVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTIL 442
+K A+ G+ G+GKS T L ++ G + I G D K +S R +G Q TI+
Sbjct: 1 RKIAIYGKGGIGKSTTSQNTSAALAEM-GKKVLIVGCDPK---ADSTRLILGGKAQPTII 56
Query: 443 FNDTLR 448
DTLR
Sbjct: 57 --DTLR 60
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 29.2 bits (66), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422
G SG GKST+A L R L+ + +DG +++
Sbjct: 7 FTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42
>gnl|CDD|73297 cd02034, CooC, The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible oxidation
of CO to CO2. CODH contains a nickel-iron-sulfur cluster
(C-center) and an iron-sulfur cluster (B-center). CO
oxidation occurs at the C-center. Three accessory
proteins encoded by cooCTJ genes are involved in nickel
incorporation into a nickel site. CooC functions as a
nickel insertase that mobilizes nickel to apoCODH using
energy released from ATP hydrolysis. CooC is a homodimer
and has NTPase activities. Mutation at the P-loop
abolishs its function..
Length = 116
Score = 29.0 bits (65), Expect = 3.5
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGG-IITID 417
K A+ G+ GVGK+T+A LL R KG ++ ID
Sbjct: 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 29.0 bits (65), Expect = 3.5
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 19/79 (24%)
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIIT-----------IDGQDIKKITKESLRQTIGII 436
L G SGVGKST+ K L +D G +DG D ++KE
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEF------- 56
Query: 437 PQDTILFNDTLRYNILYGN 455
+ I + L + +GN
Sbjct: 57 -ERLIENGEFLEWAEFHGN 74
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.1 bits (65), Expect = 4.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDI 409
+ ++G G GKST+AK L + +
Sbjct: 1 MRILILGPPGAGKSTLAKKLAKKLGL 26
>gnl|CDD|38518 KOG3308, KOG3308, KOG3308, Uncharacterized protein of the uridine
kinase family [Nucleotide transport and metabolism].
Length = 225
Score = 28.8 bits (64), Expect = 4.1
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 383 SKKTALIGESGV---GKSTVAKLLYRLY 407
S KT ++G SG GK+T+AK L+R +
Sbjct: 1 SMKTLIVGISGCTNSGKTTLAKSLHRFF 28
>gnl|CDD|30106 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 674
Score = 28.7 bits (64), Expect = 4.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 390 GESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
GESG GK+ K+L R GG ++G+ +++ ES
Sbjct: 95 GESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLES 133
>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 28.8 bits (63), Expect = 4.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDT 440
K ++G+ GVGK+T+ L +G TI G T E R+ I + DT
Sbjct: 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI-GNLDPAKTIEPYRRNIKLQLWDT 61
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 28.9 bits (65), Expect = 4.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
A+ G +G GKSTVAKLL + G+ +D I+ L + IP+
Sbjct: 3 AIDGPAGSGKSTVAKLLAKKL----GLPYLDTGGIRTEEVGKLASEVAAIPE 50
>gnl|CDD|133266 cd01863, Rab18, Rab18 subfamily. Mammalian Rab18 is implicated in
endocytic transport and is expressed most highly in
polarized epithelial cells. However, trypanosomal Rab,
TbRAB18, is upregulated in the BSF (Blood Stream Form)
stage and localized predominantly to elements of the
Golgi complex. In human and mouse cells, Rab18 has been
identified in lipid droplets, organelles that store
neutral lipids. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 161
Score = 28.8 bits (65), Expect = 4.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 17/52 (32%)
Query: 385 KTALIGESGVGKSTVAKLLYRL--------------YDIKGGIITIDGQDIK 422
K LIG+SGVGKS+ LL R D K +T+DG+ +K
Sbjct: 2 KILLIGDSGVGKSS---LLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVK 50
>gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 28.5 bits (64), Expect = 5.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 383 SKKTALIGESGVGKST-VAKLLYRLY-DIKGGIITID 417
S+ A++G +G GKS VA LL L ++ D
Sbjct: 23 SRHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFD 59
>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms].
Length = 560
Score = 28.7 bits (64), Expect = 5.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLYDIKGG 412
IA + T LI GESG GK A+ ++ L G
Sbjct: 264 IAKTDSTVLILGESGTGKELFARAIHNLSPRANG 297
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 28.7 bits (64), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422
G SG GKST+A L L+ + +DG +++
Sbjct: 28 FTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63
>gnl|CDD|36182 KOG0964, KOG0964, KOG0964, Structural maintenance of chromosome
protein 3 (sister chromatid cohesion complex Cohesin,
subunit SMC3) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1200
Score = 28.4 bits (63), Expect = 5.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 493 KLSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
+LSGG+K V++A AI + +P P +FDE ++LD + + LS + +
Sbjct: 1097 QLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITT 1156
Query: 549 AHRLSTITDADNI 561
R ++ AD
Sbjct: 1157 TFRPELLSVADKF 1169
>gnl|CDD|28928 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing,
ribosome biogenesis and RNA degradation. The name
derives from the sequence of the Walker B motif (motif
II). This domain contains the ATP- binding region..
Length = 203
Score = 28.5 bits (64), Expect = 5.8
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
I KL G VV G L E+ ++ L ++ DEA LD+ E I+
Sbjct: 113 IRKLKRGPHIVVATPGRLLDLLERGKLD-----LSKVKYLVLDEADRMLDMGFEDQIREI 167
Query: 536 LATLSKNRTTLV 547
L L K+R TL+
Sbjct: 168 LKLLPKDRQTLL 179
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 28.2 bits (62), Expect = 6.4
Identities = 37/151 (24%), Positives = 50/151 (33%), Gaps = 23/151 (15%)
Query: 425 TKESLRQTIGIIPQDTILFNDTLRYN----ILYGNPNASDQELCAAV-EVAQLKSFIMKL 479
KE L++ I + LF +LYG P L AV ++ + +K
Sbjct: 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309
Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS-------SLDIITERHI 532
VGE + R +A P II DE S S D R +
Sbjct: 310 SELLSKWVGESEKNI------RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVV 363
Query: 533 QTALATL---SKNRTTLVIA--HRLSTITDA 558
L L K LVIA +R + A
Sbjct: 364 GQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394
>gnl|CDD|30586 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 28.3 bits (63), Expect = 6.9
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI---------KKITKESLRQTIGIIP 437
L G G GKSTVAK+L + G ID D+ + + + + R + I+
Sbjct: 6 GLTGGIGSGKSTVAKIL-----AELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILD 60
Query: 438 QDTILFNDTLRYNILYGNPNA 458
+D L LR ++ +P A
Sbjct: 61 EDGGLDRRKLR-EKVFNDPEA 80
>gnl|CDD|145898 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 28.0 bits (63), Expect = 7.2
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 136 LSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFT 195
LS+ + +G++ + M+I IV FA + G S++ ++LY
Sbjct: 261 LSALVGSGVQLLLMVIGTIV---------FACLGFLSPSNRG----SLLTAAIVLYALTG 307
Query: 196 IITSNWRVGLSKKMN 210
+ L K
Sbjct: 308 FVAGYVSARLYKTFK 322
>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 251
Score = 27.9 bits (62), Expect = 7.4
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 494 LSGGEKQRV--SIARAIL--KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
LSGG++ V S+ A+L K P+ I DE ++LD+ ++I + T K +V++
Sbjct: 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVS 226
Query: 550 HRLSTITDADNI 561
+ +A+ +
Sbjct: 227 LKEGMFNNANVL 238
>gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate..
Length = 149
Score = 28.1 bits (63), Expect = 7.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKK 423
L G SG GKST+A+ L L+ + +DG +++
Sbjct: 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1, and
A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 28.0 bits (63), Expect = 7.7
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 387 ALIGESGVGKSTVAKLLYRLY------DIKGGIITIDGQDIKKIT 425
A++G GVGK+T+ K L + Y DIKG I + G+ +++T
Sbjct: 43 AVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKK-RRLT 86
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 27.9 bits (62), Expect = 7.8
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 494 LSGGEKQRVSIARAI--------LKNPPI--IIFDEATSSLDIITERHIQTALATL-SKN 542
LSGGE S++ A+ + + DE +LD + TAL + ++N
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183
Query: 543 RTTLVIAH 550
R VI+H
Sbjct: 184 RMVGVISH 191
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences characteristic
of ATPases, two coiled-coil regions separating the
terminal domains , and a central flexible hinge. SMC
proteins function together with other proteins in a
range of chromosomal transactions, including chromosome
condensation, sister-chromatid cohesion, recombination,
DNA repair, and epigenetic silencing of gene
expression..
Length = 178
Score = 27.9 bits (62), Expect = 9.2
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 494 LSGGEKQRVSIARAI----LKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT-LVI 548
LSGGEK ++A +K P + DE ++LD R + + ++K+ + +VI
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 549 AHRLSTITDADNII 562
+ +AD +I
Sbjct: 155 TLKKEMFENADKLI 168
>gnl|CDD|48369 cd02040, NifH, NifH gene encodes component II (iron protein) of
nitrogenase. Nitrogenase is responsible for the
biological nitrogen fixation, i.e. reduction of
molecular nitrogen to ammonia. NifH consists of two
oxygen-sensitive metallosulfur proteins: the
mollybdenum-iron (alternatively, vanadium-iron or
iron-iron) protein (commonly referred to as component
1), and the iron protein (commonly referred to as
component 2). The iron protein is a homodimer, with an
Fe4S4 cluster bound between the subunits and two
ATP-binding domains. It supplies energy by ATP
hydrolysis, and transfers electrons from reduced
ferredoxin or flavodoxin to component 1 for the
reduction of molecular nitrogen to ammonia..
Length = 270
Score = 27.9 bits (62), Expect = 9.5
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
++ A+ G+ G+GKST + L G + I G D K +S R +G T+L
Sbjct: 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK---ADSTRLLLGGKAIPTVL- 57
Query: 444 NDTLR 448
DTLR
Sbjct: 58 -DTLR 61
>gnl|CDD|38232 KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide-binding
[Cell cycle control, cell division, chromosome
partitioning].
Length = 300
Score = 27.6 bits (61), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 390 GESGVGKSTVAKLLYRL---YDIKGGIITID 417
G+ GVGKSTV L K G++ D
Sbjct: 55 GKGGVGKSTVTVNLALALASEGKKVGLLDAD 85
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,978,354
Number of extensions: 379179
Number of successful extensions: 1883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 306
Length of query: 597
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 498
Effective length of database: 4,124,446
Effective search space: 2053974108
Effective search space used: 2053974108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)