RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780576|ref|YP_003064989.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
(597 letters)
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 328 bits (842), Expect = 3e-90
Identities = 162/475 (34%), Positives = 258/475 (54%), Gaps = 57/475 (12%)
Query: 157 HLIPTILEFAISMAFLWYSY-GDIYVSIMAVTVILYVWFTIITSNWRVGL---------- 205
+ T+L ++ LW + + +++A+ V+L + + NWR+ L
Sbjct: 114 RALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM---NWRLSLVLVVLGIVYT 170
Query: 206 ---------SKKMNNLLHECHAKVF----DTLINFETIQYFNSEKFEINRLEKYISKYKE 252
+K + E + +F D + N +Q +N + E L
Sbjct: 171 LITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLA 230
Query: 253 SAISVATSLGWLNFGQGL---IFSIGMVITMIISSHAVYIGEQTVGDFV----FINTLLT 305
+ + V L W L +I M+ +++ + V G+ VG+ V F L+
Sbjct: 231 AQMPV---LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIG 287
Query: 306 QLAIPLNILGTIYRDSRQSFI--------EIEELLNILNEKIEIQNAVNSKDLKIKNGHI 357
+L D +FI ++EE + + ++++ + DL G +
Sbjct: 288 RL------------DQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335
Query: 358 VFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITID 417
F++VSFSY++ + +SFE P + A++G +G GKST+ LL R++D + G I ID
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
G DI+ +T+ SLR+ I ++ QD LFN ++ NI G P+A+D+E+ AA E AQ FI
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE 455
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
+ P+GYDTVVGERG +LSGGE+QR++IARA+LK+PPI+I DEATS+LD+ TE ++ AL
Sbjct: 456 RKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 538 TLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
L K RTT +IAHRLST+ +AD I+VFD G VVESGS + L+++GG + ++ + Q
Sbjct: 516 ELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 325 bits (836), Expect = 2e-89
Identities = 175/595 (29%), Positives = 303/595 (50%), Gaps = 45/595 (7%)
Query: 8 SLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLK-WVTESLIEQSTAS 66
LR L LWP++ P R R++ A+ +++ + L +P+ ++ + + S+
Sbjct: 2 RLRPLAALWPFVRP-YRG----RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL 56
Query: 67 KTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQR 126
+ + +V L+ + GT R +L +G+ + V +H+ LS
Sbjct: 57 LNRYFAFLLVVALVLALGTA---------ARFYLVTWLGERVVADIRRAVFAHLISLSPS 107
Query: 127 FHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAV 186
F + G++ S ++ ++ +I + + L + ++ + ++ + +
Sbjct: 108 FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFIT--SPKLTSLVL 165
Query: 187 TVILYVWFTIITSNWRV-GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEK 245
+ V I+ RV LS++ + + + + +TL T+Q F E E +R
Sbjct: 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGG 225
Query: 246 YISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISS---------HAVYIGEQTVGD 296
+ K E+A + L +VI ++ + H V G+ + G
Sbjct: 226 AVEKAYEAARQRIRTRALL---------TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGT 276
Query: 297 ---FVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIK 353
FVF ++ A + L ++ + +++ E L+ +L + +I+ + K L +
Sbjct: 277 LGQFVFYAVMV---AGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVP 333
Query: 354 -NGHIVFNNVSFSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
G I F V+F+Y G++ + P + AL+G SG GKST+ +LL R YD +
Sbjct: 334 LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393
Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
G I +DG D++++ LR + ++PQD +LF ++ NI YG P+A+D+E+ AA A
Sbjct: 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAA 453
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
FI LP GYDT +GERG+ LSGG++QR++IARAILK+ PI++ DEATS+LD +E+
Sbjct: 454 HAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ 513
Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIY 585
+Q AL TL K RTTL+IAHRL+T+ AD I+V DQG +V G+H LI++GG+Y
Sbjct: 514 LVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLY 568
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 307 bits (788), Expect = 5e-84
Identities = 174/595 (29%), Positives = 290/595 (48%), Gaps = 40/595 (6%)
Query: 11 TLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASK--T 68
T ++LW Y+ P + L + + AM V A++ + + LK + + S
Sbjct: 1 TFRRLWSYVRPY-KAGLVLAGV-AMILVAATESTLAAL---LKPLLDDGFGGRDRSVLWW 55
Query: 69 TSYLTIGIVIL--ITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQR 126
+ IG+ +L I S+ + +++ +SN + + V + + L
Sbjct: 56 VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVR------------MFEKLLGLPVS 103
Query: 127 FHINYKVGKLSSAISNGI-RSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMA 185
F G L S I+ + +V + T+ + + L+YS+
Sbjct: 104 FFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSW--------Q 155
Query: 186 VTVILYVWFTIITSNWRV------GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFE 239
+T+I+ V +++ R +SK++ N + + +TL + ++ F + +E
Sbjct: 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE 215
Query: 240 INRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVF 299
R + ++ + A+ + ++ + LI S+ + + + I+ G T GDF
Sbjct: 216 TRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTA 275
Query: 300 INTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVF 359
T + L PL L + ++ E L +L+ E ++ ++ G + F
Sbjct: 276 FITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG--TRAIERARGDVEF 333
Query: 360 NNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
NV+F Y + IS I P + AL+G SG GKST+ L+ R Y+ G I +DG
Sbjct: 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393
Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP-NASDQELCAAVEVAQLKSFIM 477
D+ T SLR+ + ++ QD +LFNDT+ NI YG A E+ A+ A + F+
Sbjct: 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD 453
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
KLP G DT +GE G+ LSGG++QR++IARA+LK+ PI+I DEATS+LD +ER +Q AL
Sbjct: 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513
Query: 538 TLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
L + RTTLVIAHRLSTI AD I+V D G +VE G+H L+++ G+Y + Q
Sbjct: 514 RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 274 bits (703), Expect = 4e-74
Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 2/368 (0%)
Query: 228 ETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAV 287
ETI+ +E NR ++ ++ Y ++ V LI + I + +H V
Sbjct: 328 ETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLV 387
Query: 288 YIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNS 347
G + G V N L ++ P+ L +++D +Q+ I +E L +ILN E ++A
Sbjct: 388 IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GL 446
Query: 348 KDLKIKNGHIVFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRL 406
L G I F N+ F Y + + ++ +I P + ++G SG GKST+ KLL RL
Sbjct: 447 AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506
Query: 407 YDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA 466
Y + G + +DG D+ LR+ +G++ Q+ +LF+ ++R NI NP A + + A
Sbjct: 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA 566
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
++A FI +LP GY+T VGE+G LSGG++QR++IARA++ NP I+IFDEATS+LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYT 586
+E I + + + RT ++IAHRLST+ D IIV ++G + ESG HE L++ G+Y
Sbjct: 627 ESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686
Query: 587 SMWKKQCE 594
+W++Q
Sbjct: 687 RLWQQQSG 694
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 262 bits (671), Expect = 2e-70
Identities = 139/390 (35%), Positives = 214/390 (54%), Gaps = 4/390 (1%)
Query: 205 LSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWL 264
+SK M N + + L + + F ++ E R +K ++ ++ + + ++
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSIS 251
Query: 265 NFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQS 324
+ LI S+ + + +S + T G + + + L PL L + ++
Sbjct: 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRG 311
Query: 325 FIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPS 383
+ L IL+ + E + ++ G I F NV+F+Y + I+F+I
Sbjct: 312 MAACQTLFAILDLEQEKDEG--KRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAG 369
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
K AL+G SG GKST+A LL R YDI G I +DG D++ T SLR + ++ Q+ LF
Sbjct: 370 KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF 429
Query: 444 NDTLRYNILYG-NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRV 502
NDT+ NI Y S +++ A +A FI K+ NG DTV+GE G+ LSGG++QR+
Sbjct: 430 NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
Query: 503 SIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNII 562
+IARA+L++ PI+I DEATS+LD +ER IQ AL L KNRT+LVIAHRLSTI AD I+
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549
Query: 563 VFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
V + G +VE G+H L++Q G+Y + K Q
Sbjct: 550 VVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 260 bits (665), Expect = 8e-70
Identities = 145/445 (32%), Positives = 243/445 (54%), Gaps = 33/445 (7%)
Query: 158 LIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECH 217
LIPT ++ ++ V ILY I+ + + +K + +
Sbjct: 147 LIPTAFAMDWRLSI-----------VLMVLGILY----ILIAKLVMQRTKNGQAAVEHHY 191
Query: 218 AKVF----DTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGL--- 270
VF D++ N + +N + E + L+++ + + V L W GL
Sbjct: 192 HNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPV---LDWWALASGLNRM 248
Query: 271 IFSIGMVITMIISSHAVYIGEQTVGDFV----FINTLLTQLAIPLNILGTIYRDSRQSFI 326
+I M+ ++I + V GE +VG+ + F N L+ +L + I+ ++
Sbjct: 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIF----EARA 304
Query: 327 EIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKT 386
++E+ ++ + + + ++ +L G + F +++F + + + +SFE +
Sbjct: 305 KLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTV 364
Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDT 446
A++G +G GK+T+ LL R+YD G I IDG DI +T+ESLR++I + QD LFN +
Sbjct: 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRS 424
Query: 447 LRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506
+R NI G A+D+E+ A + A FI+K NGYDT+VGERG +LSGGE+QR++IAR
Sbjct: 425 IRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484
Query: 507 AILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQ 566
AILKN PI++ DEATS+LD+ TE ++ A+ L KNRTT +IAHRLST+ +AD ++ DQ
Sbjct: 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQ 544
Query: 567 GTVVESGSHENLISQGGIYTSMWKK 591
G ++E GS + LI + G + + ++
Sbjct: 545 GRLIEKGSFQELIQKDGRFYKLLRR 569
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 245 bits (628), Expect = 2e-65
Identities = 140/432 (32%), Positives = 231/432 (53%), Gaps = 24/432 (5%)
Query: 168 SMAF-LWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLIN 226
+ F LW S V+++ + ++ + LS+++ + + + + L
Sbjct: 292 LLGFMLWLSPRLTMVTLINLPLVFLA--EKVFGKRYQLLSEELQEAVAKANQVAEEALSG 349
Query: 227 FETIQYFNSEKFEINR----LEKYISKYKESAISVATSLGWLN--FGQGLIFSIGMVITM 280
T++ F +E+ E +R LE+ + K A++ A L W G + V+ +
Sbjct: 350 MRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL-WTTSVLGMLIQ-----VLVL 403
Query: 281 IISSHAVYIGEQTVGDFVFINTLLTQLAIPLNI--LGTIYRDSRQSFIEIEELLNILNEK 338
V G+ + G+ V + LL Q + + L +Y Q+ E++ L+ K
Sbjct: 404 YYGGQLVLTGKVSSGNLV--SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461
Query: 339 IEIQNAVNSKDLKIKNGHIVFNNVSFSYNHH--NCIFKGISFEIAPSKKTALIGESGVGK 396
I L ++ G I F +VSFSY + + KG++F + P + AL+G SG GK
Sbjct: 462 PNIPLTGTLAPLNLE-GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGK 520
Query: 397 STVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP 456
STVA LL LY GG + +DG + + L + + ++ Q+ +LF+ ++R NI YG
Sbjct: 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580
Query: 457 NASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIII 516
+ D+E+ AA + A FIM+ PNGYDT VGE+G +LSGG+KQR++IARA+++ P ++I
Sbjct: 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 517 FDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHE 576
DEATS+LD E+ +Q + + +RT L+IAHRLST+ AD I+V +G+VVE G+H+
Sbjct: 641 LDEATSALDAECEQLLQESRS--RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 577 NLISQGGIYTSM 588
L+ G Y +
Sbjct: 699 QLMEDQGCYKHL 710
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 242 bits (621), Expect = 2e-64
Identities = 124/377 (32%), Positives = 200/377 (53%), Gaps = 23/377 (6%)
Query: 217 HAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISV----ATSLGWLNFGQGLIF 272
+A + ++L ETI+ N+E R E+ ++ S + + + F Q L+
Sbjct: 324 NAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLV- 382
Query: 273 SIGMVIT---MIISSHAVYIGEQTVGDFVFINTLLTQLAI-PLNILGTI---YRDSRQSF 325
S+ +V+ +I GE T+G + +L+ A+ PL L + Y+ ++ +
Sbjct: 383 SVAIVVVGVYLISD------GELTMGGLIAC-VMLSGRALAPLGQLAGLLTRYQQAKTAL 435
Query: 326 IEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSK 384
++EL+ + E+ E ++ L+ G I F NVSF+Y +S I P +
Sbjct: 436 QSLDELMQLPVERPEGTRFLHRPRLQ---GEIEFRNVSFAYPGQETPALDNVSLTIRPGE 492
Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFN 444
K A+IG G GKST+ KLL LY G + +DG DI++I LR+ IG +PQD LF
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY 552
Query: 445 DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
TLR NI G P A D+E+ A E+A + F+ + P+G D +GERG LSGG++Q V++
Sbjct: 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF 564
ARA+L++PPI++ DE TS++D +E + L +T +++ HR S + D IIV
Sbjct: 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVM 672
Query: 565 DQGTVVESGSHENLISQ 581
D G +V G + ++
Sbjct: 673 DNGRIVADGPKDQVLEA 689
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 235 bits (602), Expect = 2e-62
Identities = 166/573 (28%), Positives = 288/573 (50%), Gaps = 51/573 (8%)
Query: 38 VIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIR 97
VIA+ V L I + + +I+ K L I + LI +Y ++ I ++I+
Sbjct: 162 VIAAIIVTL-ISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAY----IIQQILSYIQ 216
Query: 98 DFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSS----------AISNGIRSI 147
FL +GQ + + + H+++L F + G++ S A+++ I S+
Sbjct: 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSL 276
Query: 148 EMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSK 207
+ + I+V+ + L + FL +SI VI+ ++
Sbjct: 277 FLDMWILVI--VGLFLVRQNMLLFLL-----SLLSIPVYAVIIILFKR---------TFN 320
Query: 208 KMNNLLHECHA----KVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGW 263
K+N+ + +A + + L ETI+ SE ++++ Y + +
Sbjct: 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA--- 377
Query: 264 LNFGQGLIFSIGMVITMII----SSHAVYIGEQTVGDFVFINTLLTQLAIPL-NI--LGT 316
+ GQ I ++ +I ++ ++ V G+ T+G + N LL+ PL NI L
Sbjct: 378 -DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436
Query: 317 IYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGI 376
+ +R + + E+ + +E I + +L NG IV N+VS+SY + + I I
Sbjct: 437 KLQAARVANNRLNEVYLVDSEFINKKKRTELNNL---NGDIVINDVSYSYGYGSNILSDI 493
Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGII 436
S I + KT ++G SG GKST+AKLL + + G I ++G +K I + +LRQ I +
Sbjct: 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553
Query: 437 PQDTILFNDTLRYNILYGN-PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLS 495
PQ+ +F+ ++ N+L G N S E+ AA E+A++K I +P GY T + E G +S
Sbjct: 554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTI 555
GG+KQR+++ARA+L + ++I DE+TS+LD ITE+ I L L +++T + +AHRLS
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVA 672
Query: 556 TDADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
+D IIV D G ++E GSH+ L+ + G Y S+
Sbjct: 673 KQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 224 bits (574), Expect = 4e-59
Identities = 154/591 (26%), Positives = 271/591 (45%), Gaps = 46/591 (7%)
Query: 17 PYMWPANRWDLKVRIIGAMFSVIASKFVILG---IPFLLK-WVTESLIEQSTASKTTSYL 72
P + A L+ ++ ++A ++L IP + +V E L++ L
Sbjct: 139 PSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLL 198
Query: 73 TIGIVILITSYGT-MRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKL-----SQR 126
+G+ L+ T +++ L I+ L V + + + H+ +L +QR
Sbjct: 199 GMGLTALLQGVLTWLQLYYLRRLQIK--LAVGMS--------ARFLWHILRLPVRFFAQR 248
Query: 127 FHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEF--AISMAFLWYSYGDIYVSIM 184
+ I++ ++ + + + L T L+ + A L Y + I
Sbjct: 249 H---------AGDIASRVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIG 299
Query: 185 AVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLE 244
+ V + S RV ++++ + L + ET++ E +R
Sbjct: 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWA 359
Query: 245 KYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLL 304
Y +K + + L L+ S+ + +++ V G+ T+G V +L+
Sbjct: 360 GYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLM 419
Query: 305 TQLAIPLNIL---GTIYRDSRQSFIEIEELLN----ILNEKIEIQNAVNSKDLKIKNGHI 357
+ P+N L G ++ ++++L L E+ E A + ++ G++
Sbjct: 420 SSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS-GYV 478
Query: 358 VFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
N++F Y+ + + S + P ++ AL+G SG GKST+AKL+ LY G I
Sbjct: 479 ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
DG ++I +E L ++ ++ QD LF T+R N+ +P D +L A + A + I
Sbjct: 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVI 598
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
P GYD + E G LSGG++QR+ IARA+++NP I+I DEATS+LD TE+ I L
Sbjct: 599 TSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL 658
Query: 537 ATLSKNR--TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIY 585
+ R T +++AHRLSTI D D IIV ++G VV+ G+HE L + GG Y
Sbjct: 659 ----RRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY 705
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 223 bits (571), Expect = 1e-58
Identities = 97/265 (36%), Positives = 154/265 (58%), Gaps = 3/265 (1%)
Query: 329 EELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTA 387
+ I +K E+ S + NNVSF+Y + + KG+S +I +K A
Sbjct: 312 RRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA 370
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTL 447
L+G +G GKST+ +LL R +D + G I ++GQ I ++ +LRQ I ++ Q LF+ TL
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430
Query: 448 RYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARA 507
R N+L PNASD+ L ++ L+ + + G + +GE G +LSGGE++R+ IARA
Sbjct: 431 RDNLLLAAPNASDEALIEVLQQVGLEKLL-EDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489
Query: 508 ILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQG 567
+L + P+++ DE T LD TER I LA ++N+T L+I HRL+ + D I V D G
Sbjct: 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNG 549
Query: 568 TVVESGSHENLISQGGIYTSMWKKQ 592
++E G+H+ L++Q G Y + ++
Sbjct: 550 QIIEQGTHQELLAQQGRYYQLKQRL 574
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 215 bits (550), Expect = 2e-56
Identities = 124/446 (27%), Positives = 202/446 (45%), Gaps = 34/446 (7%)
Query: 134 GKLSSAISNGIRSIE-MIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYV 192
G+L++ G+ +++ R + ++ I+ AI A + I I+ +T L
Sbjct: 101 GELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADW--ISGLILLLTAPLIP 158
Query: 193 WFTIITSNWRV-GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYK 251
F I+ W ++K L D L T++ F K + + + +Y+
Sbjct: 159 IFMILIG-WAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYR 217
Query: 252 ESAISVATSLGWLNFGQGLIF------SIGMVITMIISSHAVYIGEQTVG---DFV---F 299
E + V + F + S+ +V AVYIG + + D F
Sbjct: 218 ERTMRVLR----IAFLSSAVLELFATLSVALV--------AVYIGFRLLAGDLDLATGLF 265
Query: 300 INTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGH-IV 358
+ L + +PL LG Y E L +L+ + + +
Sbjct: 266 VLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVTAAPAPSLE 322
Query: 359 FNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITID 417
F+ +S +Y + +SF + P ++ AL+G SG GKST+ LL D G I ++
Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382
Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
G + +S R I +PQ LF T+ NI P+ASD E+ A+E A L F+
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVA 442
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
LP G DT++GE G LSGG+ QR+++ARA L++ P+++ DE T+ LD TE + AL
Sbjct: 443 ALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502
Query: 538 TLSKNRTTLVIAHRLSTITDADNIIV 563
L++ RT L++ HRL+ AD I+V
Sbjct: 503 ALAQGRTVLLVTHRLALAERADRIVV 528
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 205 bits (523), Expect = 3e-53
Identities = 152/606 (25%), Positives = 259/606 (42%), Gaps = 92/606 (15%)
Query: 24 RWDLKVRIIGAMFSVIASKFVILG--IPFLLKWVTESLIEQSTASKTTSYLTIGIVILIT 81
R DL I AM ++ + +LG +P + + I + S + I + +L
Sbjct: 135 RRDL--LAILAM-GLLGT---LLGMLVPIATGILIGTAIPDADRSLL---VQIALALLAA 185
Query: 82 SYG-----------TMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHIN 130
+ G +R+ + + Q A V + +L F
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASL---------QAA-------VWDRLLRLPVSFFRQ 229
Query: 131 YKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFL--WYSYGDIYVSIMAVTV 188
Y G L+S GI I I+ + + + + FA+ L +YS+ V++ V
Sbjct: 230 YSTGDLASRAM-GISQIRRILSGSTLTTLLSGI-FALLNLGLMFYYSWKLALVAVALALV 287
Query: 189 ILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNS-EKFEINRLEKY- 246
+ V T++ +V +++ L I+ T+Q N K + E
Sbjct: 288 AIAV--TLVLGLLQVRKERRLLEL---------SGKISGLTVQLINGISKLRVAGAENRA 336
Query: 247 -------ISKYKESAISVATSLGWLN-FGQGL-IFSIGMVITMIISSHAVYIGEQTVGDF 297
S+ ++ +S L F L + + + IS ++G F
Sbjct: 337 FARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGG--AGLSLGSF 394
Query: 298 VFINTLLTQLAIPLNILGTIYRDSRQSFIEI-------EELLNILNEKIEIQNAVNSKDL 350
+ NT G + + I I E IL E D
Sbjct: 395 LAFNTAFGSF------SGAV-TQLSNTLISILAVIPLWERAKPILEALPE--VDEAKTDP 445
Query: 351 KIKNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409
+G I + V+F Y I +S +I P + A++G SG GKST+ +LL
Sbjct: 446 GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505
Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEV 469
+ G + DGQD+ + +++R+ +G++ Q+ L + ++ NI G P D+ A E
Sbjct: 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE----AWEA 561
Query: 470 AQLKSF---IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
A++ I +P G TV+ E G LSGG++QR+ IARA+++ P I++FDEATS+LD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYT 586
T+ + +L L T +VIAHRLSTI +AD I V D G VV+ G+++ L+++ G++
Sbjct: 622 RTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFA 679
Query: 587 SMWKKQ 592
+ ++Q
Sbjct: 680 QLARRQ 685
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 201 bits (514), Expect = 4e-52
Identities = 102/356 (28%), Positives = 176/356 (49%), Gaps = 54/356 (15%)
Query: 254 AISVA--------TSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLT 305
+IS+A + LG LNFG G +T+ G FV I
Sbjct: 258 SISIALVAVYFGFSYLGELNFG-----HYGTGVTLFA------------GFFVLI----- 295
Query: 306 QLA----IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGH---IV 358
LA PL LGT Y Q+ E L+ L + + ++ + I
Sbjct: 296 -LAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLA---HPQQGEKELASNDPVTIE 351
Query: 359 FNNVS-FSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL-----YRLYDIKGG 412
++ S + + ++F + ++ AL+G SG GK+++ L Y+ G
Sbjct: 352 AEDLEILSPDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ------G 404
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
+ I+G +++++ ES R+ + + Q+ L + TLR N+L GNP+ASD++L A+E A +
Sbjct: 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWV 464
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
F+ LP G DT +G++ LS G+ QR+++ARA+L+ +++ DE T+SLD +E+ +
Sbjct: 465 SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524
Query: 533 QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
AL S+ +TTL++ H+L + D I V G +V+ G + L GG++ ++
Sbjct: 525 MQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 200 bits (510), Expect = 9e-52
Identities = 87/231 (37%), Positives = 135/231 (58%), Gaps = 1/231 (0%)
Query: 363 SFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI 421
F+Y + + ++F + P + + G +G GKST+ L+ R +D+ G I +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 422 KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
K+ +S R + ++ Q LF+DT+ NI G P+A+ QE+ +A + I++LP
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
GYDT VGERG+ LSGG+KQR+SIARA+L N I+I D+A S++D TE I L +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE 499
Query: 542 NRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
RT ++ AHRLS +T+A I+V G + + G+H+ L Q G Y M++ Q
Sbjct: 500 GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 198 bits (506), Expect = 3e-51
Identities = 92/241 (38%), Positives = 150/241 (62%), Gaps = 1/241 (0%)
Query: 352 IKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
+++G I +NVSF+Y N + + I+ + AL+G +G GKST+A LL Y +
Sbjct: 336 LQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ 471
G I +DG+ + ++ LRQ + ++ QD ++ DT N+ G + S++++ A+E Q
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQ 454
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
L LP+G T +GE+G LS G+KQ +++AR +++ P I+I DEAT+++D TE+
Sbjct: 455 LAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKK 591
IQ ALA + ++ T +VIAHRLSTI +AD I+V +G VE G+H+ L++ G Y M++
Sbjct: 515 IQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQL 574
Query: 592 Q 592
Q
Sbjct: 575 Q 575
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 183 bits (466), Expect = 1e-46
Identities = 78/196 (39%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ ++SF Y + G+S ++ P ++ A++G SG GKST+ LL L D G +T+
Sbjct: 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
DG + + E LR+ I + QD LF+ T+R N+ G P+A+D+EL AA+E L ++
Sbjct: 395 DGVSVSSLQDE-LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWL 453
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
LP+G DTV+GE G +LSGGE+QR+++ARA+L + PI++ DE T LD TE + L
Sbjct: 454 RSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL 513
Query: 537 ATLSKNRTTLVIAHRL 552
+T +VI H L
Sbjct: 514 LAALSGKTVVVITHHL 529
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 176 bits (447), Expect = 2e-44
Identities = 95/236 (40%), Positives = 146/236 (61%), Gaps = 3/236 (1%)
Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G I F +V Y + G+SFEI+PS+K ++G +G GKS++ L+R+ +++ G
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
I IDG DI K LR+ +GIIPQ +LF+ T+R+N+ N + +D +L ++E A LK
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH-NDADLWESLERAHLK 1354
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
I + G D V E G S G++Q +S+ARA+L+ I++ DEAT+++D+ T+ IQ
Sbjct: 1355 DVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ 1414
Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS-QGGIYTSM 588
+ K+ T L+IAHRL+TI D D I+V D G VVE + ENL+S +G ++ M
Sbjct: 1415 KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Score = 115 bits (291), Expect = 2e-26
Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 34/292 (11%)
Query: 302 TLLTQLAIPLNILGTIYR---DSRQSFIEIEELLNILNEKIEIQNAVNSKDL---KIKNG 355
+L L PL +L + ++ S +EELL + E++ + N L IKNG
Sbjct: 562 SLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-LAEERVLLPNPPLEPGLPAISIKNG 620
Query: 356 HIVFNNVSFSYNHHN--CIFKGISFEIAPSKKTALIGESGVGK-STVAKLLYRLYDIKGG 412
FS++ I+ ++ A++G +G GK S ++ +L L
Sbjct: 621 -------YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP-NASDQELCAAVEVAQ 471
+ I R T+ +PQ + +FN T+R NIL+G+P + E A++V
Sbjct: 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--RAIDVTA 718
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
L+ + LP G T +GERG+ +SGG+KQRVS+ARA+ N + IFD+ S+LD R
Sbjct: 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Query: 532 I-QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQG 582
+ + + +T +++ ++L ++ D II+ +G + E G++E L + G
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNG 830
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 167 bits (425), Expect = 6e-42
Identities = 94/239 (39%), Positives = 143/239 (59%), Gaps = 6/239 (2%)
Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G + F N Y + + + I+ I +K ++G +G GKS++ L+R+ + G
Sbjct: 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP--NASDQELCAAVEVAQ 471
I IDG +I KI LR I IIPQD +LF+ +LR N+ +P SD+E+ A+E+A
Sbjct: 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALELAH 1399
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
LK+F+ LP+ D E G LS G++Q V +ARA+L+ I++ DEAT+++D+ T+
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459
Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWK 590
IQ+ + T ++ T L IAHRL+TI D +IV D+G V E G+ NL+ Q GI+ SM K
Sbjct: 1460 IQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518
Score = 119 bits (300), Expect = 2e-27
Identities = 92/321 (28%), Positives = 158/321 (49%), Gaps = 30/321 (9%)
Query: 277 VITMIISSHAVYIGEQTVGD----FVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELL 332
++ +I + V + E + D FV + L L PLNIL + Q+ + ++ L
Sbjct: 553 LVALITFAVYVTVDENNILDAEKAFVSL-ALFNILRFPLNILPMVISSIVQASVSLKRLR 611
Query: 333 NILNEKIEIQNAVNSKDLKIKNGH-IVFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIG 390
L+ + +++ + +K G+ I +N +F++ GI+F I A++G
Sbjct: 612 IFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVG 671
Query: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450
+ G GKS++ L D G + + G ++ +PQ + ND+LR N
Sbjct: 672 QVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLREN 718
Query: 451 ILYG---NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARA 507
IL+G N Q L A + L+ LP+G T +GE+G+ LSGG+KQRVS+ARA
Sbjct: 719 ILFGKALNEKYYQQVLEACALLPDLEI----LPSGDRTEIGEKGVNLSGGQKQRVSLARA 774
Query: 508 ILKNPPIIIFDEATSSLDIITERHIQTAL---ATLSKNRTTLVIAHRLSTITDADNIIVF 564
+ N I +FD+ S++D +HI + + KN+T +++ H +S + D IIV
Sbjct: 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVM 834
Query: 565 DQGTVVESGSHENLISQGGIY 585
G + E GS++ L+ + G +
Sbjct: 835 SGGKISEMGSYQELLQRDGAF 855
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 162 bits (413), Expect = 2e-40
Identities = 84/263 (31%), Positives = 143/263 (54%), Gaps = 8/263 (3%)
Query: 321 SRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFE 379
+RQ++ + ELL + + L GH+ NV+ +GISF
Sbjct: 287 ARQAYKRLNELLANYPSRDP------AMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFR 340
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQD 439
+ + A+IG SG GKST+A+L+ ++ G + +DG D+K+ +E+ + IG +PQD
Sbjct: 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD 400
Query: 440 TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEK 499
LF T+ NI NA +++ A ++A + I++LP+GYDTV+G G LSGG++
Sbjct: 401 VELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460
Query: 500 QRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR-TTLVIAHRLSTITDA 558
QR+++ARA+ +P +++ DE S+LD E+ + A+ L T +VI HR S +
Sbjct: 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520
Query: 559 DNIIVFDQGTVVESGSHENLISQ 581
D I+V G + G + ++++
Sbjct: 521 DKILVLQDGRIARFGERDEVLAK 543
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 162 bits (410), Expect = 4e-40
Identities = 113/363 (31%), Positives = 186/363 (51%), Gaps = 30/363 (8%)
Query: 241 NRLEKYISKYKESAISVA----TSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGD 296
+R+ K K ++ I +S WL + ++G V+ + ++ AV
Sbjct: 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTI---RLETLGGVMIWLTATFAVLRNGNAENQ 1165
Query: 297 FVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVN----SKDLKI 352
F +T+ L+ LNI + RQ+ + N LN + N ++ + +
Sbjct: 1166 AGFASTMGLLLSYTLNITTLLSGVLRQA----SKAENSLNSVERVGNYIDLPSEATAIIE 1221
Query: 353 KN---------GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKL 402
N G I F +V Y + G+SF ++PS+K ++G +G GKS++
Sbjct: 1222 NNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNA 1281
Query: 403 LYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SD 460
L+R+ +++ G I ID D+ K LR+ + IIPQ +LF+ T+R+NI +P + +D
Sbjct: 1282 LFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI---DPFSEHND 1338
Query: 461 QELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEA 520
+L A+E A +K I + P G D V E G S G++Q +S+ARA+L+ I++ DEA
Sbjct: 1339 ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEA 1398
Query: 521 TSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
T+S+D+ T+ IQ + K+ T LVIAHRL+TI D D I+V G V+E S + L+S
Sbjct: 1399 TASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458
Query: 581 QGG 583
+
Sbjct: 1459 RDT 1461
Score = 105 bits (263), Expect = 3e-23
Identities = 123/494 (24%), Positives = 218/494 (44%), Gaps = 48/494 (9%)
Query: 111 TLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVH-LIPTILEFAISM 169
TL + +L+ N+ GK+++ I+ +++ I + H L +SM
Sbjct: 375 TLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQL--HGLWSAPFRIIVSM 432
Query: 170 AFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKV---FDTLIN 226
L+ G + + +L T+I R K L +V + L +
Sbjct: 433 VLLYQQLGVASLFGSLILFLLIPLQTLIVRKMR----KLTKEGLQWTDKRVGIINEILAS 488
Query: 227 FETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLN-FGQGLIFSIGMVITMIISSH 285
+T++ + EK E I + +S L+ F ++ SI +V+T++ S
Sbjct: 489 MDTVKCYAWEK----SFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLV--SF 542
Query: 286 AVYI---GEQTVGDFVFINTLLTQLAIPLNILGTIYR---DSRQSFIEIEELLNILNEKI 339
V++ G+ T +L L PLN+L + ++ S IEELL + E+I
Sbjct: 543 GVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELL-LSEERI 601
Query: 340 EIQNAV---NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGK 396
QN + + IKNG S+ I+ EI A++G +G GK
Sbjct: 602 LAQNPPLQPGAPAISIKNG-----YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGK 656
Query: 397 -STVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGN 455
S ++ +L L + + I G ++ +PQ + +FN T+R NIL+G+
Sbjct: 657 TSLISAMLGELSHAETSSVVIRG-------------SVAYVPQVSWIFNATVRENILFGS 703
Query: 456 PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPII 515
S++ A++V L+ + LP T +GERG+ +SGG+KQRVS+ARA+ N I
Sbjct: 704 DFESER-YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762
Query: 516 IFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
IFD+ S+LD + + + K +T +++ ++L + D II+ +G + E G+
Sbjct: 763 IFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822
Query: 575 HENLISQGGIYTSM 588
L G ++ +
Sbjct: 823 FAELSKSGSLFKKL 836
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 148 bits (376), Expect = 3e-36
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 8/239 (3%)
Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
G +VF V Y + +G+SF IAP +K ++G +G GKST+ R+ ++ GG
Sbjct: 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP--NASDQELCAAVEVAQ 471
I ++G++I LR+ +IPQD +LF+ T+R N+ +P AS E+ AA+E+
Sbjct: 1367 IRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALELVG 1423
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILK-NPPIIIFDEATSSLDIITER 530
L+ + G D+ V E G S G++Q + +ARA+LK I+ DEAT+++D +R
Sbjct: 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483
Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLI-SQGGIYTSM 588
IQ + + T + IAHRL T+ D IIV D G V E GS L+ ++ I+ SM
Sbjct: 1484 QIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSM 1542
Score = 105 bits (264), Expect = 3e-23
Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 18/222 (8%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGI 435
+S + K T ++G +G GKST+ + L ++I G ++ E ++I
Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG----------RVWAE---RSIAY 725
Query: 436 IPQDTILFNDTLRYNILYGNP-NASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKL 494
+PQ + N T+R NIL+ + +A+ L AV V+QL++ + +L G +T +GE+G+ L
Sbjct: 726 VPQQAWIMNATVRGNILFFDEEDAAR--LADAVRVSQLEADLAQLGGGLETEIGEKGVNL 783
Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLDI-ITERHIQTALATLSKNRTTLVIAHRLS 553
SGG+K RVS+ARA+ N + + D+ S+LD + ER ++ +T ++ H++
Sbjct: 784 SGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843
Query: 554 TITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCES 595
+ AD ++ G V SGS + + + +Y ++ + E+
Sbjct: 844 VVPRADYVVALGDGRVEFSGSSADFM-RTSLYATLAAELKEN 884
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 136 bits (343), Expect = 2e-32
Identities = 103/328 (31%), Positives = 162/328 (49%), Gaps = 75/328 (22%)
Query: 322 RQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNC-IFKGISFE 379
R+S I++ + N I I+N D+K G I +V+F Y + N I+K ++F
Sbjct: 1142 RKSNIDVRD-----NGGIRIKN---KNDIK---GKIEIMDVNFRYISRPNVPIYKDLTFS 1190
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG-IITIDGQDIKKITKESLRQ------- 431
K TA++GE+G GKSTV LL R YD+K I + +T E Q
Sbjct: 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNV 1250
Query: 432 -----------TIGIIPQDTILFND----------------------------------- 445
G +D+ +F +
Sbjct: 1251 GMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM 1310
Query: 446 TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIA 505
++ NI +G +A+ +++ A + A + FI LPN YDT VG G LSGG+KQR++IA
Sbjct: 1311 SIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370
Query: 506 RAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIV 563
RA+L+ P I++ DEATSSLD +E+ I+ + + ++T + IAHR+++I +D I+V
Sbjct: 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430
Query: 564 FDQ----GTVVES-GSHENLIS-QGGIY 585
F+ G+ V++ G+HE L+S Q G+Y
Sbjct: 1431 FNNPDRTGSFVQAHGTHEELLSVQDGVY 1458
Score = 101 bits (253), Expect = 5e-22
Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Query: 460 DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDE 519
D E+ + + F+ LP+ Y+T+VG KLSGG+KQR+SIARAI++NP I+I DE
Sbjct: 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605
Query: 520 ATSSLDIITERHIQTALATL--SKNRTTLVIAHRLSTITDADNIIVF 564
ATSSLD +E +Q + L ++NR T++IAHRLSTI A+ I V
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVL 652
Score = 89.7 bits (222), Expect = 2e-18
Identities = 107/423 (25%), Positives = 188/423 (44%), Gaps = 63/423 (14%)
Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
S + IGI I S+ + +++++ I L +E + V+ +FH
Sbjct: 102 SLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEF------------LKSVFYQDGQFHD 149
Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMA--FLWYSYGDIYVSIMAVT 187
N KL+S + + + I + TI +A + ++W + + +++
Sbjct: 150 NNPGSKLTSDLDFYLEQVNAGIGTKFI----TIFTYASAFLGLYIWSLFKNARLTLCITC 205
Query: 188 VILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFD-TLINFETIQYFNSEKFEINRL--- 243
V ++ + N +V ++KK + L + + + L+ T+ + EK + +
Sbjct: 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLS 265
Query: 244 EKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTL 303
EK SKY A NF + L IGM+ I++S+A G + I+ L
Sbjct: 266 EKLYSKYILKA----------NFMESL--HIGMINGFILASYAFGF---WYGTRIIISDL 310
Query: 304 LTQ-----------LAIPLNILGTIY---------RDSRQSFIEIEELLNILNEKIEIQN 343
Q ++I L +L +++ + +S L I+N K ++N
Sbjct: 311 SNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVEN 370
Query: 344 AVNSKDLK-IKNGHIVFNNVSFSYNHHNC--IFKGISFEIAPSKKTALIGESGVGKSTVA 400
+ K LK IK I F NV F Y+ I+K ++F + K A +GESG GKST+
Sbjct: 371 NDDGKKLKDIKK--IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428
Query: 401 KLLYRLYD-IKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNAS 459
KL+ RLYD +G II D ++K I + R IG++ QD +LF+++++ NI Y +
Sbjct: 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLK 488
Query: 460 DQE 462
D E
Sbjct: 489 DLE 491
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 127 bits (320), Expect = 1e-29
Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 22/236 (9%)
Query: 350 LKIKNGHIVFNNVSFSYNH-HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD 408
+K K+ I NVSFSY + N K +SFEI + A++G +G GKST++K+L L
Sbjct: 1 IKNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK 60
Query: 409 IKGGIITIDGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG------NPNASD 460
+ G I IDG I K + +R+ IGII Q D T+ +I +G P
Sbjct: 61 PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK 120
Query: 461 QELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEA 520
+ + ++ ++ K P LSGG+KQRV+IA + NP IIIFDE+
Sbjct: 121 DIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIASVLALNPEIIIFDES 169
Query: 521 TSSLDIITERHIQTALATLSKNRT-TLV-IAHRLSTITDADNIIVFDQGTVVESGS 574
TS LD +R I+ + L K R TL+ I H + AD +IVF +G ++ G
Sbjct: 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 118 bits (297), Expect = 5e-27
Identities = 115/502 (22%), Positives = 216/502 (43%), Gaps = 52/502 (10%)
Query: 112 LYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEF--AISM 169
L+ Q++ V + K G++ + + + I+ ++ + + I L AI +
Sbjct: 960 LHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019
Query: 170 AFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLI---- 225
+ Y I+++ + V VI I+ + + S+++ L E + +F LI
Sbjct: 1020 VSVLQPY--IFIAAIPVAVIF-----IMLRAYFLRTSQQLKQLESEARSPIFSHLITSLK 1072
Query: 226 NFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSH 285
TI+ F + + K ++ + + ++L W +IF + I+
Sbjct: 1073 GLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG 1132
Query: 286 AVYIGEQTVGDFVFINTLLTQLAIPLNILGT--------IYRDS-RQSFIEIEELLNILN 336
GE VG L + +NIL T I D +S + + +++
Sbjct: 1133 TNQDGEGEVGII---------LTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQ 1183
Query: 337 EKIEIQNAVN----SKDLKIKN----------GHIVFNNVSFSYNHH-NCIFKGISFEIA 381
E+ S L I+N G + ++ Y + + +SF +
Sbjct: 1184 EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVE 1243
Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTI 441
++ L+G +G GKST+ L RL +G I IDG +T ++ R+ G+IPQ
Sbjct: 1244 GGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVF 1302
Query: 442 LFNDTLRYNILYGNPNA--SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEK 499
+F+ T R N+ +P SD+E+ E LKS I + P+ D V+ + G LS G K
Sbjct: 1303 IFSGTFRKNL---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359
Query: 500 QRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDAD 559
Q + +AR+IL I++ DE ++ LD +T + I+ L N T ++ HR+ + +
Sbjct: 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQ 1419
Query: 560 NIIVFDQGTVVESGSHENLISQ 581
+V + +V + S + L+++
Sbjct: 1420 QFLVIEGSSVKQYDSIQKLLNE 1441
Score = 100 bits (250), Expect = 1e-21
Identities = 126/547 (23%), Positives = 237/547 (43%), Gaps = 74/547 (13%)
Query: 71 YLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHIN 130
YL +G+ +L +V + H F +G L+ + KLS R
Sbjct: 123 YLALGLCLLF-------IVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK 175
Query: 131 YKVGKLSSAISNGIRSIEMIIRIIVVHLI-PTILEFAISMAFLWYSYGDIYVSIMAVTVI 189
G+L S +SN + + + + H + L+ + M +W ++ V
Sbjct: 176 ISTGQLVSLLSNNLNKFDE--GLALAHFVWIAPLQVILLMGLIW--------ELLEVNGF 225
Query: 190 LYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTL-INFETIQYFNSEK---FEINRLEK 245
+ F I+ + ++ L +KM + K+ + L I E I+ S K +E +EK
Sbjct: 226 CGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWE-EAMEK 284
Query: 246 YISKYKESAISVATSLGWLNF--GQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN-T 302
I ++ + + + +L + FS V+ + + +A+ G F I+
Sbjct: 285 IIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYC 344
Query: 303 LLTQLAIPLNILGTI--YRDSRQSFIEIEELL----------NILNEKIEIQNAV----- 345
++ ++ + G I + DS + +I++ L N+ ++E+ N
Sbjct: 345 IVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDE 404
Query: 346 -----------NSKDLKIKNGH--IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGES 392
N+K K NG + F+N S + + K ISF++ + A+ G +
Sbjct: 405 GIGELFEKIKQNNKARKQPNGDDGLFFSNFSL---YVTPVLKNISFKLEKGQLLAVAGST 461
Query: 393 GVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNIL 452
G GKS++ L I G + +G KI K S R I PQ + + T++ NI+
Sbjct: 462 GSGKSSL------LMMIMGELEPSEG----KI-KHSGR--ISFSPQTSWIMPGTIKDNII 508
Query: 453 YGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512
+G + + + ++ QL+ I P TV+GE G+ LSGG++ R+S+ARA+ K+
Sbjct: 509 FG-LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA 567
Query: 513 PIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
+ + D + LD++TE+ I ++ L L N+T +++ +L + AD I++ +G
Sbjct: 568 DLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF 627
Query: 572 SGSHENL 578
G+ L
Sbjct: 628 YGTFSEL 634
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 116 bits (293), Expect = 2e-26
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 17/238 (7%)
Query: 356 HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG--- 411
I N++ Y K I+ +I ++ TALIG SG GKST+ + L R+ D + G
Sbjct: 1 AIEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 412 -GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA----SDQELC 464
G + DGQDI KKI LR+ +G++ Q F ++ NI YG P +EL
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG-PRLHGIKDKKELD 118
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
VE + K+ L + + + L LSGG++QR+ IARA+ P +++ DE TS+L
Sbjct: 119 EIVEESLKKA---ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
D I I+ + L K T +++ H + +D F G +VE G E + +
Sbjct: 176 DPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 112 bits (283), Expect = 2e-25
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ N+S Y + K I+ I P + A+IG SG GKST+ + + RL + G I +
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 417 DGQDIKKITKESLRQT---IGIIPQD-TILFNDTLRYNILYGN--------------PNA 458
+G DI K+ + LR+ IG+I Q ++ T+ N+L+G
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518
+ +A+E L + R +LSGG++QRV+IARA+ + P +I+ D
Sbjct: 122 DKERALSALERVGLADKAYQ-----------RADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 519 EATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
E +SLD T + + L ++K T ++ H++ AD I+ G +V G+
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 107 bits (268), Expect = 1e-23
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR--- 430
IA + ++G SG GKST ++L RL + G I IDG++I K + LR
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69
Query: 431 --------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNG 482
Q + P TIL N +L +L ++ +++ L+ + + P+
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD- 128
Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN 542
+LSGG +QRV +ARA+ P I++ DEA S+LD + +Q L L
Sbjct: 129 ----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 543 --RTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLI 579
+T + I H L I D I++ G +V+ G+ + ++
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 107 bits (268), Expect = 1e-23
Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 353 KNGHIVFNNVSFSYNHHNCI-FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
KN IVF NVSF Y K +SF I + T+++G +G GKST+AKL+ + +K
Sbjct: 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS 63
Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELCAAVEV 469
G I + Q I E LR+ IGI+ Q D ++Y++ +G N + V
Sbjct: 64 GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
++ +K + + E LSGG+KQRV+IA + NP +II DEATS LD
Sbjct: 124 SE----ALKQVDMLERADYEPN-ALSGGQKQRVAIAGVLALNPSVIILDEATSMLD---- 174
Query: 530 RHIQTALATL------SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQG 582
+ L L N T + I H LS +AD++IV ++GTV + G+ +
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 105 bits (264), Expect = 4e-23
Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F+NVS +Y +S I + L G SG GK+T+ KLLY G + I
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 417 DGQDIKKITKE---SLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAA 466
G+D+ ++ LR+ IG++ QD T+ N L + + + AA
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAA 121
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+ L+ P +LSGGE+QRV+IARAI+ +PP+++ DE T +LD
Sbjct: 122 LRQVGLEHKADAFP-----------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTI-TDADNIIVFDQG 567
I L L+K TT+++A H LS + A +I+ D G
Sbjct: 171 DLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 102 bits (257), Expect = 3e-22
Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 20/222 (9%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
+SF+Y + +SF + P + AL+G +G GKST+ LL RLY + G I++ G D
Sbjct: 6 GLSFAYGARRAL-DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 421 IKKITKESLRQTIGII-PQDTILFNDTLRYNILY-----GNPNASDQELCAAVEVAQLKS 474
+++ + +L + +G++ Q T+ + ++R N+ Y G A +E AA +A+L
Sbjct: 65 LRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAA-LLARL-- 120
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
G ++ +L+GG ++RV IARA+L P +++ DE T LD + I
Sbjct: 121 -------GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173
Query: 535 ALATLSKNRTTLVI--AHRLSTITDADNIIVFDQGTVVESGS 574
+ L +++ V+ H + I D ++V +G V+ G+
Sbjct: 174 HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGA 215
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 101 bits (254), Expect = 5e-22
Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 22/237 (9%)
Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
I ++SF Y + K +SF + + A++G +G GKST+AKLL L + G IT
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 416 IDGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELC----AAV 467
+ G + + T +R+ +G++ Q D T++ ++ +G N +E+ A+
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQAL 125
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
++ F+ + P+ +LSGG+KQRV+IA + P III DEATS LD
Sbjct: 126 RQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQG 582
R + + L + + T L I H L AD +IV ++G ++E G+ E + G
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 101 bits (253), Expect = 6e-22
Identities = 82/221 (37%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F VS+S + I K IS + ++G SG GKST+ KL+ RL D G I I
Sbjct: 4 IEFKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
DG DIK I LR+ IG++ Q LF T++ NI YG P ++ V+V S I
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEK---NVDVEYYLS-I 117
Query: 477 MKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
+ L Y T R +K LSGGE QRVSIAR + NP +++ DE TS+LD + I+
Sbjct: 118 VGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173
Query: 536 LATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
+ L N T + I H + D ++G +VE
Sbjct: 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 99.4 bits (248), Expect = 2e-21
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 40/238 (16%)
Query: 361 NVSFSYNHHNC--------IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
+S Y H + +S + + AL+G SG GKST+A+LL L G
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 413 IITIDGQDIKKITKE---SLRQTIGIIPQDTI-LFNDTLRYNILYGNP-------NASDQ 461
++ G+ + K+ + + R+ I ++ QD+I N + P + +++
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAER 127
Query: 462 -----ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIII 516
E+ AV++ S + K P +LSGG+ QRV +ARA+ P ++I
Sbjct: 128 LARASEMLRAVDLDD--SVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLI 174
Query: 517 FDEATSSLDIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVE 571
DEA S+LD++ + + L L + T L I H L + ++V D G +VE
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 99.3 bits (247), Expect = 2e-21
Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI-----I 414
N++ Y + I+ I +K TALIG SG GKST + L R+ D+ + +
Sbjct: 8 KNLNLWYGEKQALND-INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV 66
Query: 415 TIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAAVEV 469
+DG++I K + LR+ +G++ Q F ++ N+ YG + +EL VE
Sbjct: 67 LLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEW 126
Query: 470 AQLKSFIMKLPNGYDTVVGE---RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
A K+ + +D V + LKLSGG++QR+ IAR I P +I+ DE TS+LD
Sbjct: 127 ALKKAAL------WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
I+ I+ + L K T +++ H + + +D F G ++E E +
Sbjct: 181 ISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 98.7 bits (246), Expect = 4e-21
Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 22/204 (10%)
Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
I F VS +Y H ++F I + L+G SG GKST KL+ + G I
Sbjct: 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61
Query: 416 IDGQDIKKITKES---LRQTIGIIPQDTILFNDTLRYN-------ILYGNPNASDQELCA 465
+GQD+ ++ LR+ IG++ QD L +D Y+ I+ P +++ + A
Sbjct: 62 FNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSA 121
Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
A+E L+ LP ++LSGGE+QRV+IARAI+ PP+++ DE T +LD
Sbjct: 122 ALEKVGLEGKAHALP-----------MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLD 170
Query: 526 IITERHIQTALATLSKNRTTLVIA 549
R I ++ TT+++A
Sbjct: 171 PELSRDIMRLFEEFNRRGTTVLVA 194
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 98.2 bits (245), Expect = 6e-21
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 14/204 (6%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG----- 411
I N++F Y + + K I+ +IA ++ TA IG SG GKST+ + R+Y++
Sbjct: 14 IQVRNLNFYYGKFHAL-KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE 72
Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAA 466
G I +DG++I K LR +G++ Q F ++ NI +G S E+
Sbjct: 73 GEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDER 132
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
VE A K+ L N + + G LSGG++QR+ IAR I P +++ DE S+LD
Sbjct: 133 VEWALTKA---ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDP 189
Query: 527 ITERHIQTALATLSKNRTTLVIAH 550
I+ I+ + L ++ T +++ H
Sbjct: 190 ISTGRIEELITELKQDYTVVIVTH 213
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 97.8 bits (243), Expect = 6e-21
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 19/224 (8%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI-----KGGIIT 415
+V+F Y + + KGIS EI A IG SG GKST +L R+ D+ G I
Sbjct: 8 DVNFWYGDFHAL-KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 416 IDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG--NPNASDQELCAAVEVAQ 471
IDG++I K + + LR+ +G++ Q F ++ N+ YG D
Sbjct: 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEET 126
Query: 472 LKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
LK + +D V + E LSGG++QR+ IARA+ +P +++ DE S+LD I+
Sbjct: 127 LKGAAL-----WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
Query: 529 ERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVE 571
++ + L K+ T +++ H + +D F G +VE
Sbjct: 182 TAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 97.6 bits (243), Expect = 8e-21
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 41/236 (17%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDIKK--ITK 426
KG+S +I TALIG SG GKST + L R+ D IK G + +DGQDI + +
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 427 ESLRQTIGIIPQDTILFNDTLRYNILYG-------------------NPNASDQELCAAV 467
LR+ +G++ Q F ++R NI YG + +A D+ + ++
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 468 EVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
A L +D V + + L LSGG++QR+ IAR + +P +I+ DE S+L
Sbjct: 182 RQAAL----------WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231
Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVF-DQGTVVESGSHENL 578
D I I+ + L++ T +V+ H + +D VF G +VE + +
Sbjct: 232 DPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 97.5 bits (243), Expect = 9e-21
Identities = 77/253 (30%), Positives = 120/253 (47%), Gaps = 35/253 (13%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GII 414
+SF Y + IS E ++ TALIG SG GKST + L R+ D I G G I
Sbjct: 10 RGLSFFYGDFQAL-HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 415 TIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG-NPNASDQELCAAVEVAQ 471
+DG++I + LR+ +G++ Q F ++ N+ YG N + A V +
Sbjct: 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVER 128
Query: 472 -LKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
L+ + +D V + E L LSGG++QR+ IARA+ P +++ DE S+LD I
Sbjct: 129 SLRHAAL-----WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPI 183
Query: 528 TERHIQTALATLSKNRTTLVIAH------RLSTITDADNIIVFDQGTVVESGSHENLISQ 581
+ I+ + L T +++ H R+S +T F G ++E G E
Sbjct: 184 ATQKIEELIHELKARYTIIIVTHNMQQAARVSDVT-----AFFYMGKLIEVGPTEQ---- 234
Query: 582 GGIYTSMWKKQCE 594
I+T +KQ E
Sbjct: 235 --IFTRPREKQTE 245
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 97.5 bits (243), Expect = 9e-21
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 21/227 (9%)
Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-----IKGGIITIDGQDIK 422
H + GI E+ P + A+IG SG GK+T+ + + L I+ G ITID +
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTA--R 71
Query: 423 KITKE-----SLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
++++ LRQ +G + Q+ LF + T+ NI+ G + A A + +
Sbjct: 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA--RELL 129
Query: 477 MKLP-NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
K+ G +T R LSGG++QRV+IARA+ P +I+FDE TS+LD +
Sbjct: 130 AKVGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 536 LATLSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
+ L++ + T+VI H +S D AD I DQG +VE G + L +
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 96.8 bits (241), Expect = 1e-20
Identities = 73/234 (31%), Positives = 112/234 (47%), Gaps = 18/234 (7%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GII 414
N+ Y N K I+ I + TALIG SG GKST+ + L R+ D I+G G +
Sbjct: 7 ENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 415 TIDGQDI-KKITKESLRQTIGIIPQDTILFNDTLRYNILYG--NPNASDQELCAAVEVAQ 471
T+DG+DI I LR +G++ Q F ++ N+ YG D+++ V
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS 125
Query: 472 LKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
L+ + +D V + LSGG++QR+ IAR I P +I+ DE TS+LD I
Sbjct: 126 LRGAAL-----WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
Query: 529 ERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
I+ + L KN T +++ H + +D F G +VE + + S
Sbjct: 181 THKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 96.7 bits (241), Expect = 2e-20
Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 22/222 (9%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDI--KKITK 426
K I+ +I ++ TALIG SG GKST + L R+ D I G + +DGQDI I
Sbjct: 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79
Query: 427 ESLRQTIGIIPQDTILFNDTLRYNILYGNPNA----SDQELCAAVEVAQLKSFIMKLPNG 482
LR+ +G++ Q F ++ N+ YG P ++L VE + + +
Sbjct: 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAAL------ 132
Query: 483 YDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
+D V + + L LSGG++QR+ IARA+ P +++ DE TS+LD I+ I+ + L
Sbjct: 133 WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192
Query: 540 SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
K+ T +++ H + + +D F G +VE G +L +
Sbjct: 193 KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 96.4 bits (240), Expect = 2e-20
Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 38/250 (15%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ F++V+ + + G++F +A +K ALIG SG GKST+ ++L L I G I +
Sbjct: 1 VRFSDVTKRFGILTVL-DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59
Query: 417 DGQ---------------DIKKITKESLRQTIGII-------PQDTILFNDTLRYNILYG 454
+G+ D K + + +R IG++ P T+L N T ++ G
Sbjct: 60 EGEQLYHMPGRNGPLVPADEKHLRQ--MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514
A ++ A+E+ + K + +LSGG++QRV+IARA+ P +
Sbjct: 118 MARAEAEK--RAMELLDMVGLADKADH--------MPAQLSGGQQQRVAIARALAMRPKV 167
Query: 515 IIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVE 571
++FDE TS+LD + + L+ + T L++ H + + AD + FD+G +VE
Sbjct: 168 MLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227
Query: 572 SGSHENLISQ 581
G + + Q
Sbjct: 228 QGKPDEIFRQ 237
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 96.2 bits (239), Expect = 2e-20
Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 14/222 (6%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG---GIITID 417
N++ Y +F I+ +I +K TALIG SG GKST + R+ D G++ I+
Sbjct: 7 NLNLFYGKKQALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIE 65
Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI-----LYGNPNASDQELCAAVEVAQL 472
G+D+K +LR+ +G++ Q +F ++ NI L+G D+E V+ Q
Sbjct: 66 GKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQK 125
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
++ + + + L LSGG++QR+ IARA+ P +++ DE TS+LD I+ I
Sbjct: 126 VGLFEEVKDK----LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 533 QTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
+ L LS N + +++ H + AD F G ++E G
Sbjct: 182 EELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFG 223
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 96.1 bits (240), Expect = 2e-20
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
N+S + I ++ I K A+IGESG GKST+ ++ L G + ++G++
Sbjct: 3 NISKKFGDKI-ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE 61
Query: 421 IKKITK----ESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+ + R+ +G + Q+ L N+T+ N+ G K
Sbjct: 62 TPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG-----------LKYKKLSKKE 110
Query: 476 IMKLPNGYDTVVGERGL------KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
+ VG +LSGGE+QRV++ARAILK+PP+I+ DE T SLD
Sbjct: 111 KREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR 170
Query: 530 RHIQTALATLSKNRTTLVIA-HRLSTITDADNII 562
+ L L+ T++I H AD +I
Sbjct: 171 DEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVI 204
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 95.9 bits (239), Expect = 3e-20
Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 41/281 (14%)
Query: 335 LNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGV 394
+ ++ +L + + N++ Y +F IS I ++ TA IG SG
Sbjct: 4 HGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALF-DISMRIPKNRVTAFIGPSGC 62
Query: 395 GKSTVAKLLYRLYD------IKGGIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDT 446
GKST+ + R+ D I+G I +DGQ+I KK+ LR+ +G++ Q F +
Sbjct: 63 GKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKS 121
Query: 447 LRYNILYG---NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQ 500
+ N++YG + + L AVE + L+ + +D V + E LSGG++Q
Sbjct: 122 IYENVVYGLRLQGINNRRVLDEAVERS-LRGAAL-----WDEVKDRLHENAFGLSGGQQQ 175
Query: 501 RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI-------AHRLS 553
R+ IARAI P +++ DE TS+LD I+ I+ + L K++ T+VI A R+S
Sbjct: 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTHNMQQAARVS 234
Query: 554 TITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCE 594
D G +VE G + ++TS KKQ E
Sbjct: 235 -----DYTAFMYMGKLVEYGDTDT------LFTSPAKKQTE 264
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 95.6 bits (238), Expect = 3e-20
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431
F + TA+ G SG GK+T+ +L+ L G I ++G+ + K I ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 432 TIGIIPQDTILFND-TLRYNILYG-------NPNASDQELCAAVEVAQLKSFIMKLPNGY 483
IG + Q+ LF ++R N+ YG S + + +E+ + + +LP
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERV---IELLGIGHLLGRLPG-- 130
Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK-- 541
+LSGGEKQRV+I RA+L +P +++ DE ++LD + I L L
Sbjct: 131 ---------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 542 NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQG 582
L ++H L + AD ++V + G V +G + +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 94.8 bits (236), Expect = 6e-20
Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 32/229 (13%)
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
HN + K ISF + P + L+GESG GKST L RL + +G I DGQ + + +
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEI-WFDGQPLHNLNRRQ 356
Query: 429 L---RQTIGIIPQDTILFNDTLRYNILYGNPNASDQE------------LCAAVEVAQLK 473
L R I ++ QD N +L NP + + L AA Q+
Sbjct: 357 LLPVRHRIQVVFQDP---NSSL-------NPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 474 SFIMKLPNGYDTVVGER-GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
+ + ++ G D R + SGG++QR++IARA++ P +II DE TSSLD + I
Sbjct: 407 AVMEEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 533 QTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
L +L + L I+H L + +IV QG VVE G E +
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
Score = 78.2 bits (193), Expect = 5e-15
Identities = 70/260 (26%), Positives = 110/260 (42%), Gaps = 46/260 (17%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRL--- 406
L I+N + F + +S +I + AL+GESG GKS A + RL
Sbjct: 6 LAIENLSVAFRQ----QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61
Query: 407 ----YDIKGGIITIDGQDIKKITKESLRQT----IGIIPQDTILFNDTLRYNI---LYG- 454
Y G I G+ + ++++LR I +I Q+ ++ + L + + LY
Sbjct: 62 PPVVY--PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPL-HTLEKQLYEV 118
Query: 455 -------NPNASDQELCAAVE---VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
A+ E+ ++ + Q + P+ +LSGGE+QRV I
Sbjct: 119 LSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPH-----------QLSGGERQRVMI 167
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNI 561
A A+L P ++I DE T++LD+ + I L L + N L I H LS + AD +
Sbjct: 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRV 227
Query: 562 IVFDQGTVVESGSHENLISQ 581
V G VE L S
Sbjct: 228 AVMQNGRCVEQNRAATLFSA 247
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 94.7 bits (236), Expect = 6e-20
Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 31/242 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ N++ Y I +S + K TALIG +G GKST+ K RL + G + +
Sbjct: 3 LRTENLTVGYGTKR-ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLR---------YNILYGNPNASDQELCAA 466
+ I ++ L + + ++PQ + T+R + L+G +A D
Sbjct: 62 GDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR--- 118
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
V A ++ I + + R LSGG++QR +A + ++ P+++ DE T+ LDI
Sbjct: 119 VNQAMEQTRI-------NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
Query: 527 ITERHIQTALATL-----SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
H Q L L ++ +T + + H L+ + D+++V G V+ G+ E +++
Sbjct: 172 ---NH-QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
Query: 581 QG 582
G
Sbjct: 228 PG 229
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 94.5 bits (235), Expect = 7e-20
Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 18/233 (7%)
Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG 411
KN I NV+ SY + K + +I K TALIG SG GKSTV + L R+ D I+G
Sbjct: 10 KNIIISLQNVTISYGTFEAV-KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 412 ----GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG-NPNASDQELC 464
G + DG D+ ++ +R+ IG++ Q F ++ NI +G N ++
Sbjct: 69 CSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMD 128
Query: 465 AAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
VE + K+ + +D + E G LSGG++QR+ IAR I P +I+ DE
Sbjct: 129 ELVERSLRKAAV------WDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
S+LD I+ I+ + L KN T +++ H + ++ F VE GS
Sbjct: 183 SALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 94.2 bits (234), Expect = 8e-20
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 21/231 (9%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG---- 411
I N S Y + K ++ +I ++ TA+IG SG GK+T+ + + R+ D I G
Sbjct: 4 IEIENFSAYYGEKKAV-KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAA 466
G I GQDI ++ R+ +G++ Q F ++ N+ +G + S +L
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 467 VEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
VE + K+ + +D V + + G +LSGG++QR+ IARA+ P +I+ DE TS+
Sbjct: 123 VEESLKKAAL------WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 524 LDIITERHIQTALATLSKNRTTLVIAHRLS-TITDADNIIVFDQGTVVESG 573
LD I + I+ L LS+N T +++ H + I AD I +G ++E G
Sbjct: 177 LDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 94.1 bits (234), Expect = 1e-19
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+S + + ++ E+ AL+G SG GKST+ +++ L G I +
Sbjct: 1 IEIANISKRFGSFQAL-DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59
Query: 417 DGQDIKKITKESLR-QTIGIIPQDTILFND-TLRYNILYG------NPNASDQELCAAVE 468
+GQD T+ R + IG + Q LF T+R NI +G + +E
Sbjct: 60 NGQDA---TRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLE 116
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
+ QL+ + PN +LSGG++QRV++ARA+ P +++ DE +LD
Sbjct: 117 LVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 529 ERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
+ +++ L L + TT+ + H + AD I+V G + + GS + +
Sbjct: 166 RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 93.9 bits (233), Expect = 1e-19
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 26/243 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG----- 411
I ++SF YN I +GIS +I +K TA+IG SG GKST K L R+ +++G
Sbjct: 8 IKVKDLSFYYNTSKAI-EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66
Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAA 466
G++ GQ+I +I LR+ IG++ Q F ++ N+ YG + +L
Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEI 126
Query: 467 VEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
VE A LK + + V + + L LSGG++QR+ IARA+ P +++ DE S+
Sbjct: 127 VESA-LKGAAL-----WQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 524 LDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF---DQ---GTVVESGSHEN 577
LD I ++ + +L T ++ H + T + F D+ G +VE G
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240
Query: 578 LIS 580
+ S
Sbjct: 241 IFS 243
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 93.6 bits (233), Expect = 1e-19
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 357 IVFNNVSFSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
I N++F Y + +SF + + ++IG +G GKST +L+ L + + G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 415 TIDGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCA----A 466
IDG + + +R IG++ Q D T+ ++ +G N +E+ A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD- 525
+E+ ++ F + P +LSGG+KQRV+IA A+ P III DEATS LD
Sbjct: 125 LELVGMQDFKEREPA-----------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 526 ------IITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLI 579
I T + I+ T + I H L + +D ++V G V + + L
Sbjct: 174 EGRLELIKTIKGIRD-----DYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228
Query: 580 SQGG 583
S+G
Sbjct: 229 SRGN 232
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 93.7 bits (233), Expect = 1e-19
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 23/214 (10%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK-----GGII 414
+++S YN + +S + P++ TALIG SG GKST+ + + R+ D+ G I
Sbjct: 9 SDLSVYYNKKKAL-NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 415 TIDGQDIKKITKES--LRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAAVEV 469
+G +I ++ LR+ IG++ Q F ++ N++YG Q L AVE
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK 127
Query: 470 AQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+ +K + +D V + + L LSGG++QRV IAR + +P II+ DE TS+LD
Sbjct: 128 S------LKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181
Query: 527 ITERHIQTALATLSKNRTTLVIAHRL---STITD 557
I+ I+ L L + T L++ + S I+D
Sbjct: 182 ISAGKIEETLLGLKDDYTMLLVTRSMQQASRISD 215
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 93.5 bits (232), Expect = 1e-19
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 20/213 (9%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKGGIIT----IDGQDI--KKIT 425
KGI + ++ TALIG SG GKST + L R+ D I G IT + GQ+I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 426 KESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAAVEVAQLKSFIMKLPNG 482
LR+ +G++ Q F ++ N++YG L AVE + +K
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETS------LKQAAI 134
Query: 483 YDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
+D V + E L LSGG++QRV IAR + P +I+ DE TS+LD I+ I+ L L
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 540 SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVE 571
T +++ H + + +D F G ++E
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 93.3 bits (232), Expect = 2e-19
Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 39/254 (15%)
Query: 344 AVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL 403
+ ++K++ +VS Y +F + +I TA IG SG GKST + L
Sbjct: 12 KATATEIKMRA-----RDVSVFYGEKQALF-DVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65
Query: 404 YRLYD-IKG----GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP 456
R+ D I G G IT+DG+DI ++ LR +G++ Q F ++ N+ YG P
Sbjct: 66 NRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG-P 124
Query: 457 N-----ASDQELCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAI 508
S EL VE + K+ + ++ V + E G LSGG++QR+ IARAI
Sbjct: 125 RIHGLARSKAELDEIVETSLRKAGL------WEEVKDRLHEPGTGLSGGQQQRLCIARAI 178
Query: 509 LKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAH------RLSTITDADNII 562
+P +I+ DE S+LD I ++ + L +N T +++ H R+S T
Sbjct: 179 AVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRT-----A 233
Query: 563 VFDQGTVVESGSHE 576
F G +VE G E
Sbjct: 234 FFHLGNLVEVGDTE 247
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 93.0 bits (231), Expect = 2e-19
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 352 IKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD--- 408
+ H N++ Y +F I+ +I + TA IG SG GKST + R+ D
Sbjct: 1 MSEIHASVKNLNLWYGSKQILFD-INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP 59
Query: 409 ---IKGGIITIDGQDIKKITKES--LRQTIGIIPQDTILFNDTLRYNILYGNPN-----A 458
+KG + IDG D+ + LR +G++ Q F ++ N+ YG P
Sbjct: 60 NCKVKGELD-IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAK 117
Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518
+ ++L VE + + L + + +LSGG++QR+ IARAI P +++ D
Sbjct: 118 NKKKLDEIVEKSLTS---VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174
Query: 519 EATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
E S+LD + I+ + L KN T +V+ H + +D + F G +VE +
Sbjct: 175 EPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 93.1 bits (231), Expect = 2e-19
Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 356 HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG---- 411
I N++ Y + K +S +I + TALIG SG GKST + L R+ D+
Sbjct: 12 QIKVENLNLWYGEKQAL-KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 412 -GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNP--NASDQELCAA 466
G ++I+G+DI + LR+ +G++ Q F ++ N+ YG A+ ++L
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV 130
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
VE A L+S L + + L LSGG++QR+ IAR + P II+FDE TS+LD
Sbjct: 131 VENA-LRS--AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
I+ I+ + L K+ T +++ H + +D F G ++E G
Sbjct: 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 92.9 bits (232), Expect = 2e-19
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
N+S + +S + P + A++G +G GKST+ + L G + ++G+
Sbjct: 6 RNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64
Query: 420 DIKKITKESLRQTIGIIPQDTIL-FNDTLRYNILYG-----NPNASDQELCAA----VEV 469
+ + L + ++PQ + L F T+ + G A D L AA V++
Sbjct: 65 PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL 124
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAIL------KNPPIIIFDEATSS 523
A L G +LSGGE+QRV +AR + P ++ DE TS+
Sbjct: 125 AHLA--------------GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
Query: 524 LDIITERHIQTALATLSKNRTT------LVIAHRLS-TITDADNIIVFDQGTVVESGS 574
LD+ H Q + L++ +V+ H L+ AD I++ QG +V G+
Sbjct: 171 LDL---AH-QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 92.7 bits (231), Expect = 2e-19
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 44/227 (19%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE---SLRQ 431
G+SF + K A++GESG GKST+A+LL + GG + GQD+ K E LRQ
Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQ 92
Query: 432 TIGII---------PQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNG 482
I I+ P+ + L P + L AA + + + K+
Sbjct: 93 KIQIVFQNPYGSLNPRKKV--GQIL------EEPLLINTSLSAAERREKALAMMAKV--- 141
Query: 483 YDTVVGERGLK----------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
GL+ SGG++QR++IARA++ +P +++ DE S+LD+ + +
Sbjct: 142 --------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
Query: 533 QTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576
+ L + + I+H LS + AD ++V G VE G+ E
Sbjct: 194 LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE 240
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 92.6 bits (230), Expect = 3e-19
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 20/228 (8%)
Query: 361 NVSFSYNHHNCIFK--------GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
+V+ +Y +S I + L+G SG GKST+A+LL L G
Sbjct: 7 DVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66
Query: 413 IITIDGQDIKKITKES---LRQTIGIIPQDTI-LFNDTLRYNILYGNPNASDQELCAAVE 468
++ GQD+ ++ ++ R+ + ++ QD+ N + + G P L + +
Sbjct: 67 TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ 126
Query: 469 VAQLKSFI--MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
A++ + + L + +LSGG+ QR++IARA+ P +I+ DEA S+LD+
Sbjct: 127 KARIAELLDMVGLR---SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
Query: 527 ITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVE 571
+ + I L L + T L I H L + + V D+G +VE
Sbjct: 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 92.2 bits (230), Expect = 3e-19
Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 17/226 (7%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
+N++ Y + I +G+S E+ + T ++G +GVGK+T+ K L L +K G I +DG+
Sbjct: 4 SNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62
Query: 420 DIKKI-TKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
DI K+ E R I +PQ +F T+ N+L G + ++ I
Sbjct: 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRS-------RKIPDEIY 115
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL--DIITERHIQTA 535
+L ++G RG LSGG++Q+++IARA++ P +++ DE T + II + I
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD--IGRV 173
Query: 536 LATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
+ L L++ L + AD V ++G VV SG+ + L
Sbjct: 174 IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 92.2 bits (229), Expect = 3e-19
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 17/239 (7%)
Query: 353 KNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY---D 408
K+ + F +VSF+Y + ISF I TALIG +G GKST++KL+ L D
Sbjct: 2 KDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 409 IKGGIITIDGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELCAA 466
IT+DG + T +R+ +GI+ Q D T+ ++ +G N A
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-------A 114
Query: 467 VEVAQLKSFIMKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
V ++ + + G + LSGG+KQRV+IA + P III DE+TS L
Sbjct: 115 VPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
Query: 525 DIITERHIQTALATL--SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ 581
D + I + L N T + I H + AD ++V D G ++ GS + S+
Sbjct: 175 DPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 91.8 bits (228), Expect = 5e-19
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 30/225 (13%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ + V + Y H F +A + A++G SG GKST+ L+ + G I +
Sbjct: 1 LALDKVRYEYEHLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470
+ Q ++ + ++ Q+ LF T+R NI G +P NA QE V+ A
Sbjct: 58 NDQSH--TGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQE--KVVDAA 113
Query: 471 Q---LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
Q + ++ +LP +LSGG++QRV++AR +++ PI++ DE S+LD +
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 528 TERHIQTALATLS--KNRTTLVIAHRLS-TITDADNIIVFDQGTV 569
+ + L + RT L++ H LS A I V QG +
Sbjct: 163 LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 91.7 bits (227), Expect = 5e-19
Identities = 80/264 (30%), Positives = 132/264 (50%), Gaps = 27/264 (10%)
Query: 337 EKIEIQNAVNSKDLKIK------NGHIVFN--NVSFSY-NHHNCIFKGISFEIAPSKKTA 387
+K E++ +N K ++ N VF N +F Y N + ++ +I +K TA
Sbjct: 53 KKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTA 112
Query: 388 LIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDI--KKITKESLRQTIGIIPQDT 440
IG SG GKST + L +L D I+G G I G + KKI+ LR IG++ Q
Sbjct: 113 FIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172
Query: 441 ILFNDTLRYNILYG--NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLS 495
F ++ N+ YG N +D+++ + LKS + +D V + + G LS
Sbjct: 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-----WDEVKDDLDKAGNALS 227
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTI 555
GG++QR+ IARAI P +++ DE TS+LD I I+ + L K + +++ H ++
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA 287
Query: 556 TD-ADNIIVFDQGTVVESGSHENL 578
+D + F QG + E+G + +
Sbjct: 288 QRISDETVFFYQGWIEEAGETKTI 311
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 91.8 bits (229), Expect = 5e-19
Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 45/243 (18%)
Query: 357 IVFNNVSFSYNHHNCIF---KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
I N+S + +S I + +IG SG GKST+ + + L G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 414 ITIDGQDIKKITKESL---RQTIGIIPQDTILFN----DTLRYNI-----LYGNPNASDQ 461
+ +DGQD+ ++++ L R+ IG+I Q FN T+ N+ L G P A +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDNVALPLELAGTPKAEIK 118
Query: 462 ----ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIF 517
EL V ++ + P +LSGG+KQRV+IARA+ NP +++
Sbjct: 119 ARVTELLELVGLSDKAD---RYPA-----------QLSGGQKQRVAIARALASNPKVLLC 164
Query: 518 DEATSSLDIITERHIQTALATLSK-NR----TTLVIAHRLSTITD-ADNIIVFDQGTVVE 571
DEATS+LD T R I L L NR T ++I H + + D + V D G +VE
Sbjct: 165 DEATSALDPATTRSI---LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
Query: 572 SGS 574
G+
Sbjct: 222 QGT 224
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 91.7 bits (228), Expect = 5e-19
Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 26/239 (10%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
++ F Y KG+S I KTAL+G +G GKST+ L +Y + G + + G++
Sbjct: 9 DLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE 68
Query: 421 IKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVA----QL 472
+ ++ +R +G++ Q D +F+ T+ ++ +G N E+ VE A ++
Sbjct: 69 VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM 128
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
F K P LS G+K+RV+IA + +P +I+ DE + LD + +
Sbjct: 129 WDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 533 QTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESG-----SHENLISQGGI 584
L L T+++A H + + AD +IV +G V+ G + E+++ Q G+
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGL 236
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 91.6 bits (227), Expect = 5e-19
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 27/222 (12%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR--- 430
K S I + ++G SG GKST+ +LL RL + G + IDG DI KI+ LR
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 431 --------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCA-AVEVAQLKSFIMKLPN 481
Q+ ++P T+L N L G +E A+ L+++ P+
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGME-LAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS- 540
+LSGG +QRV +ARA+ NP I++ DEA S+LD + +Q L L
Sbjct: 164 -----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 541 -KNRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLIS 580
RT + I+H L + D I + G VV+ G+ + +++
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 91.0 bits (226), Expect = 8e-19
Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 21/241 (8%)
Query: 357 IVFNNVSFSYN-----HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
I F+NVS++Y H I ++ E K A++G++G GKST+ + + L
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAI-HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 412 GIITIDGQDIKKITKES----LRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELCA 465
G +T+D I TK+ +R+ IG++ Q ++ LF DT+ I++G N
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFK-----M 116
Query: 466 AVEVAQLKSFIMKLPNGYD-TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
++ + + + + G+ V+ + ++SGG+ ++++I + NP II+ DE T+ L
Sbjct: 117 NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176
Query: 525 DIITERHIQTALATLS--KNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
D ++R + L +L +N+T ++++H ++ + AD +IV +G++V S + L
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
Query: 582 G 582
Sbjct: 237 K 237
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 91.0 bits (226), Expect = 9e-19
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 33/242 (13%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD------IKGGII 414
N++ Y + + I+ I ++ TALIG SG GKST+ + R+ D I G I+
Sbjct: 11 NLNLWYGEKHAL-YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69
Query: 415 TIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILYGNPNA----SDQELCAAVE 468
+G++I + +LR+ IG++ Q F ++ N+ YG P + + L VE
Sbjct: 70 -YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG-PRIHGEKNKKTLDTIVE 127
Query: 469 VAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
+ + + +D V + + L LSGG++QR+ IAR + NP +I+ DE S+LD
Sbjct: 128 KSLKGAAL------WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
Query: 526 IITERHIQTALATLSKNRTTLVIAH------RLSTITD---ADNIIVFDQGTVVESGSHE 576
I I+ + L K T +++ H R+S T +I FD+ T + HE
Sbjct: 182 PIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHE 241
Query: 577 NL 578
L
Sbjct: 242 EL 243
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 90.7 bits (225), Expect = 1e-18
Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK---ESLRQT 432
+SF++ P + +L+GESG GKST + L RL + +GG I +GQ I ++ ++LR+
Sbjct: 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRD 402
Query: 433 IGIIPQDTILFND---TLRYNILYGNP---NASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
I I QD D T+ +I+ P + AA VA L + LP
Sbjct: 403 IQFIFQDPYASLDPRQTVGDSIM--EPLRVHGLLPGKAAAARVAWLLERVGLLP------ 454
Query: 487 VGERGLK----LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN 542
E + SGG++QR+ IARA+ NP +II DEA S+LD+ I L L ++
Sbjct: 455 --EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512
Query: 543 R--TTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
L I+H ++ + + + V G +VE G
Sbjct: 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
Score = 73.4 bits (180), Expect = 2e-13
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 29/229 (12%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
+ +SF + + A++GESG GKS A L RL + GG++ D +++ + RQ I
Sbjct: 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS----RQVI 88
Query: 434 GIIPQDTILFNDTLRYNI--LYGNPNAS-----------------DQELCAAVEVAQLKS 474
+ Q ++ ++ P S Q + + K
Sbjct: 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKR 148
Query: 475 FI--MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
+ +++P T++ +LSGG +QRV IA A+ P ++I DE T++LD+ + I
Sbjct: 149 MLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207
Query: 533 QTALATLSKNRTTLV--IAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
+ L K + V I H + + + AD ++V QG VE+GS E +
Sbjct: 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 90.6 bits (225), Expect = 1e-18
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GIIT 415
N++ Y + K + +I ++ TA IG SG GKST+ + RL D I G G +T
Sbjct: 15 NLNVYYGSFLAV-KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT 73
Query: 416 IDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG-NPNASDQELCAAVEVAQL 472
G+++ + +R+ IG++ Q F ++ NI YG N ++ VE + L
Sbjct: 74 FHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS-L 132
Query: 473 KSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
+ + +D V + + GL LSGG++QR+ IARAI P +I+ DE S+LD I+
Sbjct: 133 RQAAL-----WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187
Query: 530 RHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
I+ + L + T +++ H + ++ F + E G
Sbjct: 188 LRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGG 232
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 90.4 bits (224), Expect = 1e-18
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 19/231 (8%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI-----KGGIIT 415
N++ ++ + I K ++ +I + TALIG SG GKST + L R+ D+ G I
Sbjct: 8 NLNTYFDDAH-ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY 66
Query: 416 IDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG--NPNASDQELCAAVEVAQ 471
+DG DI + LR+ +G++ Q F ++ N+ YG D++
Sbjct: 67 LDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEES 126
Query: 472 LKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
LK+ + +D V + + L LSGG++QR+ IAR I +P +I+ DE S+LD I+
Sbjct: 127 LKAAAL-----WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIS 181
Query: 529 ERHIQTALATLSKNRTTLVIAHRLSTITDADNII-VFDQGTVVESGSHENL 578
I+ + L ++ T +++ H + T F G ++ESG + +
Sbjct: 182 TTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 90.2 bits (223), Expect = 1e-18
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 361 NVSFSYNHHNCI--FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
N+ F Y + + G+SF I + ++IG++G GKST A+L+ L++ G + IDG
Sbjct: 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68
Query: 419 QDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQLKS 474
+ + +LR+ IG++ Q D T+ ++ +G N +E+ V+ A L
Sbjct: 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV 128
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
++ +LSGG+KQRV++A I P III DE+TS LD + I
Sbjct: 129 NMLDFKT-------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 535 ALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
+ + + T L I H L +D I+V G +++ + L +
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 89.5 bits (222), Expect = 2e-18
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 36/268 (13%)
Query: 330 ELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALI 389
EL I + I A S + I VS SY + G+SF +A + L+
Sbjct: 15 ELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGD-KAVVNGLSFTVASGECFGLL 73
Query: 390 GESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ-DTILFNDTLR 448
G +G GKST+A+++ + G IT+ G + + R IG++PQ D + T+R
Sbjct: 74 GPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR-LARARIGVVPQFDNLDLEFTVR 132
Query: 449 YNIL----YGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
N+L Y + + E AV + L F +L + D V + LSGG K+R+++
Sbjct: 133 ENLLVFGRYFGMSTREIE---AV-IPSLLEF-ARLESKADARVSD----LSGGMKRRLTL 183
Query: 505 ARAILKNPPIIIFDEATSSLD-----IITERHIQTALATLSKNRTTLVIAH------RLS 553
ARA++ +P ++I DE T+ LD +I ER + L++ +T L+ H RL
Sbjct: 184 ARALINDPQLLILDEPTTGLDPHARHLIWER----LRSLLARGKTILLTTHFMEEAERL- 238
Query: 554 TITDADNIIVFDQGTVVESGSHENLISQ 581
D + V + G + G LI +
Sbjct: 239 ----CDRLCVLEAGRKIAEGRPHALIDE 262
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 89.5 bits (222), Expect = 2e-18
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 25/193 (12%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG-----GIITIDGQDI--KKITKE 427
+S +I ++ TA+IG SG GKST + + R+ D+ G +T G+++ +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 428 SLRQTIGIIPQDTILFNDTLRYNILYG-----NPNASDQELCAAVEVAQLKSFIMKLPNG 482
+LR+ IG++ Q F ++ N+ YG D+ + ++ A L
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAAL---------- 166
Query: 483 YDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
+D V + GL LSGG++QR+ IARAI +P +I+ DE S+LD + I+ + L
Sbjct: 167 WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL 226
Query: 540 SKNRTTLVIAHRL 552
++ T +++ H +
Sbjct: 227 AEEYTVVIVTHNM 239
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 89.0 bits (221), Expect = 3e-18
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 30/239 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NVS + + I I + +IG SG GKST+ + + +L +I G + +
Sbjct: 2 IEFKNVSKHFGPTQ-VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 417 DGQDIK--KITKESLRQTIGIIPQDTILFND-TLRYNILYG--------NPNASDQ--EL 463
DG + K+ + +RQ G++ Q LF T N+++G A Q EL
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAREL 120
Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
A V +A+ + Y + +LSGG++QRV+IARA+ P +++FDE TS+
Sbjct: 121 LAKVGLAERA-------HHYPS-------ELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166
Query: 524 LDIITERHIQTALATLSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
LD + + L++ T+VI H + A +I D+G + E G + LI
Sbjct: 167 LDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 89.0 bits (221), Expect = 4e-18
Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 17/231 (7%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
++ +SY KGI+F+ + AL+G +G GKST+ + G + I G+
Sbjct: 5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 420 DIKKITKESL---RQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQL 472
IK K+SL R+T+GI+ Q D LF T+ ++ +G N S +E+ V+ A L
Sbjct: 65 PIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA-L 122
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
K+ M+ G++ LSGG+K+RV+IA + P II+ DE TS LD + I
Sbjct: 123 KAVGME---GFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176
Query: 533 QTALATLSKNRTTLVIA-HRLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581
L L+K T++I+ H + + AD + V G +++ G+ + + S
Sbjct: 177 MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 88.5 bits (219), Expect = 5e-18
Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 27/237 (11%)
Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG--G 412
G I +++ +Y N + +S EI + ALIG+SG GK+T+ + + G G
Sbjct: 4 GGIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG-----NPNASDQELCA- 465
I I +D+ ++ + ++ Q+ LF + + N+ +G P A E A
Sbjct: 63 RIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD 120
Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
A+++ L LP +LSGG +QR++IARAI P +++ DE S+LD
Sbjct: 121 ALKLVGLGDAAAHLPA-----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169
Query: 526 IITERHIQTALATLSK---NRTTLVIAH-RLSTITDADNIIVFDQGTVVESGSHENL 578
+++ +A L + T L + H + +T AD + G + G + L
Sbjct: 170 ANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 88.4 bits (219), Expect = 5e-18
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 35/247 (14%)
Query: 342 QNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAK 401
N + +DLK+ F V + G++ EI + TAL+G SG GKST+ +
Sbjct: 1 MNKIEIRDLKVS-----FGQVE--------VLDGVNLEIPDNTITALMGPSGSGKSTLLR 47
Query: 402 LLYRLYDIK-----GGIITIDGQDIKKITKESLRQTIGI-------IPQDTILFNDTL-- 447
+ RL ++ G + +DGQDI K+ LR+ + + IP +I N L
Sbjct: 48 VFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGL 107
Query: 448 RYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARA 507
+ N L + + + A+E AQL ++ + D G KLSGG++QR+ IARA
Sbjct: 108 KLNRLVKSKKELQERVRWALEKAQLWD---EVKDRLDAPAG----KLSGGQQQRLCIARA 160
Query: 508 ILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF-DQ 566
+ P +++ DE T++LD I++ L K+ T +++ H + + F +
Sbjct: 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYK 220
Query: 567 GTVVESG 573
G +VE G
Sbjct: 221 GQIVEWG 227
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 87.9 bits (218), Expect = 6e-18
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 38/222 (17%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
I G+ P T L+G +G GKST+ +LL G + + G D+ +++ + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 432 TIGIIPQDTILFNDT--------------LRYNILYGNPNASDQELC----AAVEVAQLK 473
+ ++ QD +DT + + L+ + D + A E++ L
Sbjct: 76 RVALVEQD----SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
T LSGGE+QRV +ARA+ + P +++ DE T+ LD+ +
Sbjct: 132 D------RDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 534 TALATLSKNRTTLVIA-HRLS-TITDADNIIVFDQGTVVESG 573
+ L+ T+V A H L+ + D+++V D G VV +G
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 87.9 bits (218), Expect = 7e-18
Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 24/233 (10%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSK-KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
++ +SY+ I+F IAP + A+IG +G GKST+ + + G + I G+
Sbjct: 8 DLCYSYSGSKEALNNINF-IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 420 DIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNAS-DQELCA-----AVEVAQ 471
I K +R+ +G++ Q D +F+ T+ +I +G N D+E A A+ +
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLG 126
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
L+ ++P+ LSGGEK+RV+IA I P +++ DE T+ LD +
Sbjct: 127 LEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 532 IQTALATLSKNRTTLVI--AHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
+ L L + VI H+L + + AD I V D+G +V G+ E + Q
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 87.8 bits (218), Expect = 7e-18
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 14/208 (6%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI--KKITKESLRQTI 433
++ EI + LIG +G GKST+ + L L G I IDG DI KK+ +R+ +
Sbjct: 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV 85
Query: 434 GIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
G++ Q + LF +T+ +I +G N S++E+ V+ A I+ L Y+ +
Sbjct: 86 GLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLD--YEDYKDK 140
Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLV 547
+LSGG+K+RV+IA + P I+I DE T+ LD I + L K N T ++
Sbjct: 141 SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL 200
Query: 548 IAHRLSTITD-ADNIIVFDQGTVVESGS 574
++H + + AD IIV ++G G+
Sbjct: 201 VSHSMEDVAKLADRIIVMNKGKCELQGT 228
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 87.8 bits (217), Expect = 8e-18
Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI-----I 414
+V+ Y + K ++ ++ ALIG SG GK+T + + R++D+ G I
Sbjct: 8 QDVNIYYGDKQAV-KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 415 TIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRY-NILYGNPNASDQELCAAVEVAQ 471
+DGQDI ++ ++R+ +G++ Q F + N++ G A ++ +EVA+
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126
Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
L + + LSGG++QR+ IARA+ P I++ DE TS+LD +
Sbjct: 127 RSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR 186
Query: 532 IQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
I+ + L K T +++ H + +D F G +VE G + L +
Sbjct: 187 IEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 87.0 bits (215), Expect = 1e-17
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 19/235 (8%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD----IK-G 411
I +V SY ++ + GIS + + TALIG SG GKST + L R+ D IK
Sbjct: 5 ISAKDVHLSYGNYEAL-HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELC-AA 466
G I +GQ+I K+ LR+ +G++ Q F ++ N+ YG A D+EL
Sbjct: 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR 123
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
VE + ++ I K + SGG++QR+ IARA+ P +++ DE TS+LD
Sbjct: 124 VEESLKQAAIWKETKDN---LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 527 ITERHIQTALATLSKNRTTLVIAHRL---STITDADNIIVFDQGTVVESGSHENL 578
I+ I+ L L T +++ H L I+D ++ G ++E+G E +
Sbjct: 181 ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLM--NGDLIEAGPTEEM 233
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 87.1 bits (216), Expect = 1e-17
Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 22/233 (9%)
Query: 357 IVFNNVSFSYNHHNCIFKG-----ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
I NVS++Y F+G ++ I TA IG +G GKST+ +LL L+
Sbjct: 3 INLQNVSYTY-QAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 412 GIITIDGQDIKKITK----ESLRQTIGIIPQ--DTILFNDTLRYNILYGNPN--ASDQEL 463
G + +D I +K + +R+ +G++ Q ++ LF +T+ ++ +G N S +E
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE- 120
Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
A +A+ K + L +++ + +LSGG+ +RV+IA + P I++ DE T+
Sbjct: 121 --AEALAREK---LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 524 LDIITERHIQTALATLSKNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGS 574
LD + + T L ++ T+V + H + + + AD + V ++G +V SG
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 87.1 bits (216), Expect = 1e-17
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 27/191 (14%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL-- 429
+ KG++F + AL+G +G GKST+ L L + G + IDG+ + +++ L
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD-YSRKGLLE 65
Query: 430 -RQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
RQ +G++ Q D LF + ++ +G N S+ E+ V A
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREAL------------- 112
Query: 485 TVVGERGLK------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
T VG GL+ LSGGEK+RV+IA A+ P +++ DE T+ LD + L
Sbjct: 113 TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 539 LSKNRTTLVIA 549
L T+VI+
Sbjct: 173 LRAEGMTVVIS 183
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 86.5 bits (214), Expect = 2e-17
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 21/236 (8%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI-----I 414
N ++ Y H+ + K I+ I ++ TA+IG SG GKST K L + + + +
Sbjct: 16 NGMNLWYGQHHAL-KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM 74
Query: 415 TIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAAVEV 469
+G +I K+ LR+ IG++ Q F ++ N+ YG + + ++L VE
Sbjct: 75 NYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEK 134
Query: 470 AQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+ LK + +D V + + L LSGG++QR+ IARA+ NP +++ DE TS+LD
Sbjct: 135 S-LKDVAL-----WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
++ R I+ + L + T +++ H + +D F G +VE + S
Sbjct: 189 VSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 86.6 bits (214), Expect = 2e-17
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 35/243 (14%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG----- 411
I NN+SF Y+ I +G+S EI SK TA+IG SG GKST K L R+ +++
Sbjct: 8 IKVNNLSFYYDTQK-ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVE 66
Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG------NPNASDQEL 463
G + Q+I +++ LR+ + ++ LF ++ N+ YG P E+
Sbjct: 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKL---EI 123
Query: 464 CAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEA 520
VE A +K + +D + + + L LSGG++QR+ IARA+ P +++ DE
Sbjct: 124 DDIVESA------LKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 521 TSSLDIITERHIQTALAT--LSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENL 578
LD I +++ + + L T ++++H L ++ + F +G +EN
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG-------NENR 230
Query: 579 ISQ 581
I Q
Sbjct: 231 IGQ 233
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 86.5 bits (214), Expect = 2e-17
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 351 KIKNG---HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY 407
K+ G H+V N S Y + K ++ +I TA+IG SG GKST + + R+
Sbjct: 31 KVSGGGKPHVVAKNFSIYYGEFEAV-KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMN 89
Query: 408 DI-----KGGIITIDGQDI-KKITKES-LRQTIGIIPQDTILFNDTLRYNILYGNPN--- 457
D+ G + DG+DI K T E LR+ IG++ Q F ++ NI YG P
Sbjct: 90 DLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG-PRLHG 148
Query: 458 -ASDQELCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPP 513
++L VE + K+ + +D V + + L LSGG++QR+ +AR + P
Sbjct: 149 INDKKQLEEIVEKSLRKAAL------WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE 202
Query: 514 IIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572
I++ DE TS+LD I+ + L + T +++ H + + +D + F +G +VE
Sbjct: 203 ILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262
Query: 573 GSHENLIS 580
L +
Sbjct: 263 APTAQLFT 270
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 86.2 bits (214), Expect = 2e-17
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 28/211 (13%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL-- 429
+ I+ EI P + L G SG GK+T+ L+ L ++ G + + GQ++ +++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 430 -RQTIGIIPQDTILFND-TLRYNILYG---NPNASDQELC----AAVEVAQLKSFIMKLP 480
R+ IG I Q L T R N+ PN S QE A +E L + P
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
+ LSGG+KQRV+IARA++ P +++ DE T++LD + R + + L+
Sbjct: 140 HN-----------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
Query: 541 KNR--TTLVIAH--RLSTITDADNIIVFDQG 567
+ + T L++ H R+ + AD I+ + G
Sbjct: 189 REQGCTILIVTHDNRILDV--ADRIVHMEDG 217
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 86.2 bits (213), Expect = 2e-17
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 36/280 (12%)
Query: 331 LLNILNEKIEIQNAVNSKD--LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTAL 388
++ ++ EKIEI +K+ L++K+ I + + N IS +I TAL
Sbjct: 1 VVQMVREKIEIAPFPEAKEHILEVKDLSIYYGEKR-AVND-------ISMDIEKHAVTAL 52
Query: 389 IGESGVGKSTVAKLLYRLYDI-----KGGIITIDGQDI--KKITKESLRQTIGIIPQDTI 441
IG SG GKST + + R+ D+ G I +G +I I +LR+ IG++ Q
Sbjct: 53 IGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112
Query: 442 LFNDTLRYNILYGNPNASDQE---LCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLS 495
F ++ NI + A ++ L VE + K+ + +D V + L LS
Sbjct: 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL------WDEVKDRLHSSALSLS 166
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRL-ST 554
GG++QR+ IAR + P +++ DE S+LD I+ I+ + L + + +++ H +
Sbjct: 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQA 226
Query: 555 ITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCE 594
+ +D F G +VE E I+TS +++ E
Sbjct: 227 LRVSDRTAFFLNGDLVEYDQTEQ------IFTSPKQQKTE 260
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 85.9 bits (213), Expect = 3e-17
Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 20/212 (9%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDI--KKITK 426
KGI + +K TALIG SG GKST + L R+ D I G I G DI K+I
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96
Query: 427 ESLRQTIGIIPQDTILFNDTLRYNILYGNPNA---SDQELCAAVEVAQLKSFIMKLPNGY 483
+R+ IG++ Q F ++ NI + A + L VE + LK + +
Sbjct: 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETS-LKQAAL-----W 150
Query: 484 DTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
D V + + L LSGG++QR+ IARAI P I++ DE S+LD I+ ++ + L
Sbjct: 151 DQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK 210
Query: 541 KNRTTLVIAHRLSTITDA-DNIIVFDQGTVVE 571
KN T +++ H + A D F G ++E
Sbjct: 211 KNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 85.8 bits (212), Expect = 3e-17
Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 30/249 (12%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK-----GGIIT 415
NV F NH K +S + + TA+IG SG GKSTV + + R++D+ G I
Sbjct: 11 NVHFGKNH---AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL 67
Query: 416 IDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRY-NILYG---NPNASDQELCAAVEV 469
+D DI + + S+R+ +G++ Q F Y N++ G N + E VE
Sbjct: 68 LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVE- 126
Query: 470 AQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+ LK + +D V + ++LSGG++QR+ IAR I P +I+ DE S+LD
Sbjct: 127 SSLKRVAL-----WDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIY 585
I+ I+ + L + T +++ H + +D F G +VE G + I+
Sbjct: 182 ISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK------IF 235
Query: 586 TSMWKKQCE 594
T+ KKQ E
Sbjct: 236 TTPEKKQTE 244
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 86.1 bits (213), Expect = 3e-17
Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 33/261 (12%)
Query: 337 EKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGK 396
+ + L++KN + VF+ + IS+ +K +IG SG GK
Sbjct: 9 KLKVPNPLSDDIILRVKNLYCVFDE---KQENELVALNNISYTFEKNKIYFIIGNSGSGK 65
Query: 397 STVAKLLYRLYDIKGGIITIDGQDI-----------------KKITK-ESLRQTIGIIPQ 438
ST+ L K G I + DI KKI + LR+ + ++ Q
Sbjct: 66 STLVTHFNGLIKSKYGTIQV--GDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQ 123
Query: 439 --DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG-LKLS 495
+ LF DT+ +I++G P A + A ++A K ++ K+ + ER LS
Sbjct: 124 FPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLA--KFYLNKMGLDDSYL--ERSPFGLS 178
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH-IQTALATLSKNRTTLVIAHRLST 554
GG+K+RV+IA + P I+IFDE T+ LD E +Q L + N+T VI H +
Sbjct: 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH 238
Query: 555 ITD-ADNIIVFDQGTVVESGS 574
+ + AD +IV D+G ++++G+
Sbjct: 239 VLEVADEVIVMDKGKILKTGT 259
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 85.0 bits (210), Expect = 4e-17
Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 29/238 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I NVS+SY + I+ I + +IG++G GKST+A L L + G + +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 417 DGQDIKKITK-ESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELC-AAVEVAQL 472
G D +K + +R+ +GI+ Q +T T+ ++ +G N LC +E+ +
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPEN-----LCLPPIEIRKR 116
Query: 473 KSFIMKLPNGYDTVVGERGLK---------LSGGEKQRVSIARAILKNPPIIIFDEATSS 523
D + E GL+ LSGG+ Q V++A + P +IFDE TS
Sbjct: 117 ----------VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSM 166
Query: 524 LDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
LD + + + L K +T + I H L + DAD IIV D+G +V G EN++S
Sbjct: 167 LDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 85.2 bits (211), Expect = 4e-17
Identities = 59/191 (30%), Positives = 105/191 (54%), Gaps = 20/191 (10%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDI--KKITKES 428
++ I P TA IG SG GKSTV + L R+++ I G G + +DG+D+ + +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 429 LRQTIGIIPQDTILFND-TLRYNILYG---NPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
+R+TIG++ Q F ++R N++ G N + ++L VE + ++ N ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS------LRGANLWN 136
Query: 485 TV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
V + + G LSGG++QR+ IARAI P +++ DE S+LD I+ I+ + L +
Sbjct: 137 EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ 196
Query: 542 NRTTLVIAHRL 552
+ T +++ H +
Sbjct: 197 DYTIVIVTHNM 207
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 85.1 bits (211), Expect = 4e-17
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 20/211 (9%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT---KES 428
+ KG+S I + A++G SG GKST+ LL L + G + +GQ + K++ +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 429 LR-QTIGIIPQDTILFND-TLRYNI----LYGNPNASDQELCAAVEVAQLKSFIMKLPNG 482
LR + +G I Q L D T N+ L G + V+ A+ +++ M G
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS---------VKEAKERAYEMLEKVG 130
Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN 542
+ + R +LSGGE+QRV+IARA++ P +++ DE T +LD + I + L++
Sbjct: 131 LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 543 RTT--LVIAHRLSTITDADNIIVFDQGTVVE 571
T LV+ H L D ++ G +
Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 84.9 bits (211), Expect = 5e-17
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 37/209 (17%)
Query: 386 TALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ---DI-KKITKESLRQTIGIIPQDTI 441
TA+ G SG GK+++ + L + G I ++G+ D K I ++ IG + QD
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86
Query: 442 LF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK------- 493
LF + +R N+ YG A VAQ +D +V G++
Sbjct: 87 LFPHYKVRGNLRYG---------MAKSMVAQ-----------FDKIVALLGIEPLLDRYP 126
Query: 494 --LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIA 549
LSGGEKQRV+I RA+L P +++ DE +SLD+ +R + L L++ N L ++
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVS 186
Query: 550 HRLSTITD-ADNIIVFDQGTVVESGSHEN 577
H L I AD ++V +QG V G E
Sbjct: 187 HSLDEILRLADRVVVLEQGKVKAFGPLEE 215
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 85.0 bits (211), Expect = 5e-17
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQTI 433
ISF+ + AL+GE+G GKST+ K+L Y G I IDGQ+++ T +L +
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
Query: 434 GIIPQDTILFND-TLRYNILYGN-PNAS---DQELCAAVEVAQLKSFIMKL-PNGYDTVV 487
II Q+ L + T+ N+ G P+ ++ L QL+ + + P DT +
Sbjct: 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP---DTPL 138
Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKNR 543
LS G++Q V IA+A+ +N +I FDE TSSL + R I+ + ++ R
Sbjct: 139 KY----LSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREIEQLFRVIRELRAEGR 191
Query: 544 TTLVIAHRLSTITD-ADNIIVFDQGTVVESG------SHENLISQ 581
L ++HR+ I D I VF G V + + L+
Sbjct: 192 VILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQA 236
Score = 40.3 bits (95), Expect = 0.002
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 29/220 (13%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQTI- 433
ISF + + L G G G+S + KLLY G + +DG+ I + ++++R I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 434 ---------GIIP----QDTILFNDTLRYNILYGNP--NASDQELCAAVEVAQLKSFIMK 478
GIIP D I N + R + L N + A + L +K
Sbjct: 332 LCPEDRKAEGIIPVHSVADNI--NISARRHHLRAGCLINNRWEAENADRFIRSLN---IK 386
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
P+ + ++ LSGG +Q+ + R + ++ +I+ DE T +D+ + I +
Sbjct: 387 TPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441
Query: 539 LSKN-RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576
L+ L ++ L + AD I+V +G + + E
Sbjct: 442 LAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 85.1 bits (211), Expect = 5e-17
Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD----IKGGIITIDGQDIKKITKESLR 430
++ + + AL+GESG GKS + L G I +DG+ + + S+R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIR 60
Query: 431 QT-IGIIPQDTI-LFN----------DTLR-YNILYGNPNASDQELCAAVEVAQLKSFIM 477
I I Q+ FN +TLR L A E AV + + +
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
K P +LSGG QRV IA A+L PP +I DE T+ LD++ + + L
Sbjct: 121 KYP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 538 TLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLI 579
L + T L+I H L + AD + V D G +VE G+ + +
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 84.9 bits (210), Expect = 5e-17
Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 32/237 (13%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F NV Y + G+SF + + L+G +G GK+T ++L L G I++
Sbjct: 8 IDFRNVEKRYGDK-LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66
Query: 417 DGQDIKKITKESLRQTIGIIPQ-DTILFNDTLRYNIL-----YGNPNASDQELCAAVEVA 470
G+ + + + RQ +G++PQ D + + T+R N+L +G A+ + L V
Sbjct: 67 CGEPVPSRARHA-RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VP 120
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
L F KL N D VGE LSGG K+R+++ARA++ +P +++ DE T+ LD R
Sbjct: 121 PLLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD-PQAR 174
Query: 531 HI--QTALATLSKNRTTLVIAH------RLSTITDADNIIVFDQGTVVESGSHENLI 579
H+ + + L++ +T L+ H RL D + V ++G + G+ LI
Sbjct: 175 HLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHALI 226
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 84.9 bits (210), Expect = 5e-17
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 24/215 (11%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL--- 429
+S + + +IG SG GKST+ + + L G + +DGQD+ ++ L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 430 RQTIGIIPQDTILFNDTLRYNILYGN-------PNASDQELCAAVEVAQLKSFIMKLPNG 482
R+ IG+I Q FN L ++GN N E+ +V +L + + L +
Sbjct: 81 RRQIGMIFQH---FN-LLSSRTVFGNVALPLELDNTPKDEI--KRKVTELLALV-GLGDK 133
Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK- 541
+D+ LSGG+KQRV+IARA+ NP +++ DEATS+LD T + I L +++
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 542 -NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
T L+I H + + D + V G ++E G+
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 84.3 bits (209), Expect = 7e-17
Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 12/224 (5%)
Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
++ +N+ + K IS + + L+G SG GK+T+ +++ L G I
Sbjct: 3 PYLSIDNIRKRFGAFT-ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI 61
Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLK 473
G+DI ++ + ++ GI+ Q LF N T+ NI YG N A VA+L
Sbjct: 62 YQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL 119
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
+ LP G+ LSGG++QRV++ARA+ +P +++ DE S+LD H++
Sbjct: 120 DLV-GLPGSERKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLR 174
Query: 534 TALATLSK--NRTTLVIAH-RLSTITDADNIIVFDQGTVVESGS 574
T + L + TT+++ H + ++ AD I+V + G + + G+
Sbjct: 175 TEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 83.6 bits (207), Expect = 1e-16
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKG-GIITIDGQDIKKITKES 428
+ K +S P + A++G SG GK+T+ L +KG G + ++G I +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKE 96
Query: 429 LRQTIGIIPQDTILFND-TLRYNILY------GNPNASDQELCAAVEVAQLKSFIMKLPN 481
+R + QD + T+R ++++ ++ EV Q + L
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQA----LGLRK 152
Query: 482 GYDTVVGERGLK--LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
+T +G G LSGGE++R++ A +L +PP++ DE TS LD + L L
Sbjct: 153 CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212
Query: 540 SKNRTT--LVIAHRLSTITDA-DNIIVFDQGTVVESGSHENLI---SQGGIY 585
++ T I S + + D II+ +G V GS + + S G
Sbjct: 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHP 264
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 83.5 bits (206), Expect = 2e-16
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDI--KKITKESLRQT 432
I ++ T IG SG GKSTV + L R+ D +KG G + GQD+ K + +R+
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 433 IGIIPQDTILFNDTLRYNILYG-NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV---VG 488
IG++ Q F+ ++ N+ +G N +L V+ A + + +D V +
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAAL------WDEVKDKLK 144
Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
GL LSGG++QR+ IARAI P +++ DE S+LD I R ++ + L K+ T ++
Sbjct: 145 VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 549 AHRLSTITDADNIIVFDQGTVVESGSHENLISQG 582
H + + F + + L+ G
Sbjct: 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 83.4 bits (206), Expect = 2e-16
Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 30/235 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
IV N+V+ ++ + + + SF + AL+G +G GKST+ K L + G I+I
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 417 DGQDIKKITKESLRQTIGIIPQDT-------ILFNDTLRYNILYGN------PNASDQEL 463
GQ ++ +++L + +PQ +L D + YG+ D+++
Sbjct: 67 LGQPTRQALQKNL---VAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQI 122
Query: 464 C-AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
AA+ + F + +GE LSGG+K+RV +ARAI + +I+ DE +
Sbjct: 123 VTAALARVDMVEFRHRQ-------IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFT 171
Query: 523 SLDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHE 576
+D+ TE I + L L + +T LV H L ++T+ + V +GTV+ SG E
Sbjct: 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 83.3 bits (206), Expect = 2e-16
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT---KES 428
+ +SF I + A++G SG GKST+ LL L G + +GQ + K++ K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 429 LR-QTIGIIPQDTILFND-TLRYNI----LYGNPNASDQELCAAVEVAQLKSFIMKLPNG 482
LR Q +G I Q L D T N+ L G ++ ++ M G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE---------INSRALEMLAAVG 134
Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN 542
+ R +LSGGE+QRV+IARA++ NP +++ DE T +LD I L L++
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 543 RTT--LVIAHRLS 553
+ T LV+ H L
Sbjct: 195 QGTAFLVVTHDLQ 207
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 82.8 bits (205), Expect = 2e-16
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 354 NGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
+ NN+SFS FK I+ G SG GKST+ K++ L G
Sbjct: 18 GDAKILNNISFSLRAGE--FKLIT------------GPSGCGKSTLLKIVASLISPTSGT 63
Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
+ +G+DI + E RQ + Q LF DT+ N+++ P + + A
Sbjct: 64 LLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQ---QPDPAIFL 118
Query: 474 SFIMK--LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
+ + LP DT++ + +LSGGEKQR+S+ R + P +++ DE TS+LD + +
Sbjct: 119 DDLERFALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 532 IQTALATL--SKNRTTLVIAHRLSTITDADNII 562
+ + +N L + H I AD +I
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHADKVI 208
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 82.8 bits (204), Expect = 3e-16
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 9/233 (3%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI--- 413
I V+F Y+ H + K I+ + + TA+IG SG GKST+ + L R+ DI G
Sbjct: 5 IKIRGVNFFYHKHQ-VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLE 63
Query: 414 --ITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEV 469
+ +D ++I + +LR+ +G++ Q F ++ N+ +G EV
Sbjct: 64 GAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV 123
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
+ L + + + GL LSGG++QR+ IAR + P +I+ DE S+LD ++
Sbjct: 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183
Query: 530 RHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF-DQGTVVESGSHENLISQ 581
I+ + L +N T ++ H + A + F G +VE G + S+
Sbjct: 184 MRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 82.4 bits (204), Expect = 3e-16
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
G++F++ + +G +G GK+T ++L L G + G D+ + +R++I
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSI 68
Query: 434 GIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTV 486
GI+PQ + D T R N+ LYG P +E + E+ +L + Y
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTY--- 125
Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK-NRTT 545
SGG ++R+ IA +++ P ++ DE T+ LD T R I + L + T
Sbjct: 126 --------SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
L+ H + D I + D G ++ G+ E L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 82.4 bits (204), Expect = 3e-16
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKG-----ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
I F V Y + F+ ++ I A+IG +G GKST+ + L L
Sbjct: 3 ITFQKVEHRYQY-KTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 412 GIITIDGQDIKKITKE----SLRQTIGIIPQ--DTILFNDTLRYNILYGNPN--ASDQEL 463
G +TI + I K LR+ +GI+ Q + LF +T+ +I +G N S+++
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED- 120
Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERG-LKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
A+ K+ M G + R +LSGG+ +RV+IA + P +++ DE T+
Sbjct: 121 ------AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174
Query: 523 SLDIITERHIQTALATL--SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLI 579
LD + + L K TT+++ H + AD I+V +GTV G+ +
Sbjct: 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
Query: 580 SQG 582
+
Sbjct: 235 ADP 237
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 81.4 bits (201), Expect = 5e-16
Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 23/253 (9%)
Query: 335 LNEKIEIQNAVNSKDLKIKNGHIVFN--NVSFSYNHHNCIFKGISFEIAPSKKTALIGES 392
+ + N + ++ +VF+ N++ Y + + K I+ +I ++ TA+IG S
Sbjct: 1 MVATVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHAL-KNINLDIHENEVTAIIGPS 59
Query: 393 GVGKSTVAKLLYRLYDI-----KGGIITIDGQDI--KKITKESLRQTIGIIPQDTILFND 445
G GKST K L R+ ++ G I Q+I K + E LR +G++ Q F
Sbjct: 60 GCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK 119
Query: 446 TLRYNILYGNPNA---SDQELCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEK 499
++ N+ YG P D++ + L+ + +D + + + LSGG++
Sbjct: 120 SIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAI-----WDELKDRLHDNAYGLSGGQQ 173
Query: 500 QRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-A 558
QR+ IAR + P +I+ DE TS+LD I+ ++ + L K+ + +++ H + +
Sbjct: 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARIS 233
Query: 559 DNIIVFDQGTVVE 571
D F G V E
Sbjct: 234 DKTAFFLNGYVNE 246
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 81.5 bits (201), Expect = 6e-16
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F +VS +Y +G++F + P + L G SG GKST+ KL+ + G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 417 DGQDIKKITKES---LRQTIGIIPQDTILFNDTLRYN------ILYGNPNASDQELCAAV 467
G DI ++ LR+ IG+I QD L D Y+ I+ G AS ++ V
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRV 118
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
A K ++ + ++LSGGE+QRV IARA++ P +++ DE T +LD
Sbjct: 119 SAALDKVGLLDKAKNFP-------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 80.9 bits (200), Expect = 8e-16
Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 33/225 (14%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQT- 432
G++ + + ++GESG GKST A+ + L G + G+D+ + + R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 433 --IGIIPQD---------TI--LFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK- 478
I +I QD TI + + LR + P S QE+ V K+ ++K
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGEIIAEPLR--TYH--PKLSRQEVKDRV-----KAMMLKV 148
Query: 479 --LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
LPN ++ + SGG+ QR+ IARA++ P +II DE S+LD+ + + L
Sbjct: 149 GLLPN----LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204
Query: 537 ATLSKN-RTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
L + +L+ IAH L+ + +D ++V G VE G+++ +
Sbjct: 205 QQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 80.9 bits (200), Expect = 9e-16
Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 19/237 (8%)
Query: 357 IVFNNVSFSY-----NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
I NVS+ Y + ++ E+ + ++G +G GKST+AK + L
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 412 GIITIDGQDIKKITKE-SLRQTIGIIPQ--DTILFNDTLRYNILYGNPN--ASDQELCAA 466
G + +DG D +R G++ Q D + + ++ +G N +E+
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
V+ + LK M Y+ L LSGG+KQRV+IA + P IIFDE T+ LD
Sbjct: 125 VDES-LKKVGM-----YEYRRHAPHL-LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ 581
R + + L+K T ++I H + +AD IIV D G VV G+ + + +
Sbjct: 178 SGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 80.5 bits (198), Expect = 1e-15
Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 15/240 (6%)
Query: 353 KNGHIVFN-NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
K+ VFN + + Y + I K I+ +I + ++G SG GKST+ K+L RL +I
Sbjct: 5 KSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD 64
Query: 412 GIITIDGQ------DIKKITKESLRQTIGIIPQDTILFNDTLRY-NILY---GNPNASDQ 461
I +DG+ DI +I LR+ +G++ Q F Y NI Y + +
Sbjct: 65 SKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKR 124
Query: 462 ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
E+ VE K + K YD + +LSGG++QR++IARA+ P +++ DE T
Sbjct: 125 EIKKIVEECLRKVGLWK--EVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181
Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
S +DI+ + I+ + L ++++H + AD + G +VE GS + +
Sbjct: 182 SMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 80.7 bits (199), Expect = 1e-15
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 20/224 (8%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ G+ + L+G +G GK+T+ + + G + + G D++ ++ + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 432 TIGIIPQDTIL-FNDTLRYNILYG-NPNAS-----DQELCAAVEVAQLKSFIMKLPNGYD 484
+ +PQDT L F +R + G P+ S + AAVE A ++ G
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-------GVA 130
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT--ALATLSKN 542
LSGGE+QRV +ARA+ + P+++ DE T+SLDI ++T + L +
Sbjct: 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI--NHQVRTLELVRRLVDD 188
Query: 543 RTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGI 584
T V A H L D +++ G V +G ++++ +
Sbjct: 189 GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTL 232
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 80.6 bits (199), Expect = 1e-15
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 23/204 (11%)
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDT 446
L+G SG GK+T+ +LL G I +DG+D+ + + I ++ Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 447 LRYNILYG-----NPNAS-DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQ 500
+ N+ +G P A + A+ + QL+ F + P+ +LSGG++Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQ 107
Query: 501 RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHRLS-TITD 557
RV++ARA++ P I++ DE S+LD +Q L T+ + T + + H +T
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 558 ADNIIVFDQGTVVESGSHENLISQ 581
+D I + +G + + G+ E + +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEE 191
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 80.4 bits (198), Expect = 1e-15
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 30/241 (12%)
Query: 354 NGHIVFNNVSFSYNHHNCI-FKGI---SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409
+ I+ +NVS++Y FK + S +K T +IG +G GKST+ +L
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQL------T 57
Query: 410 KGGIITIDGQ----------DIKKITK-ESLRQTIGIIPQ--DTILFNDTLRYNILYGNP 456
G II+ GQ ++KKI + + LR+ IG++ Q + LF +T+ +I +G
Sbjct: 58 NGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV 117
Query: 457 NASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIII 516
N + + A +V +L + +LP Y V +LSGG+K+RV++A I + ++
Sbjct: 118 NLGENKQEAYKKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLV 173
Query: 517 FDEATSSLDIITERHIQTALATLSKN--RTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
DE T LD E L+K + +++ H + + AD +IV +G V+ G
Sbjct: 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
Query: 574 S 574
S
Sbjct: 234 S 234
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 80.2 bits (198), Expect = 1e-15
Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 38/246 (15%)
Query: 360 NNVSFSYNHHNCIFKG---ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI--- 413
+ +S + + F+ IS+ + + ++GESG GKS + + L D G +
Sbjct: 7 DKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE 66
Query: 414 -ITIDGQDIKKITKESLRQTIG----IIPQDTIL-FND--TLRYNILY-------GNPNA 458
+ +GQD+++I+++ R +G +I QD + N T+ + I+ GN
Sbjct: 67 KLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKT 126
Query: 459 SDQ---ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPII 515
Q +L V + S + P+ +LSGG QRV IA AI P ++
Sbjct: 127 RRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKLL 175
Query: 516 IFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572
I DE T++LD+ + I L L + N ++I H L+ + + A IIV G VVE+
Sbjct: 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235
Query: 573 GSHENL 578
G ++
Sbjct: 236 GKAHDI 241
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 80.1 bits (197), Expect = 2e-15
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 31/241 (12%)
Query: 358 VFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG----- 412
N ++F Y + + K I+ + + TALIG SG GKST + R++D+ G
Sbjct: 18 EVNKLNFYYGGYQAL-KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76
Query: 413 --IITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG-------NPNASDQ 461
I+ D +I ++ +R I ++ Q F ++ N+ YG + ++
Sbjct: 77 EIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE 136
Query: 462 ELCAAVEVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518
+ A+ A L +D V +G+ LSGG++QR+ IARA+ +P I++FD
Sbjct: 137 RVENALRNAAL----------WDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186
Query: 519 EATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHEN 577
E TS+LD I I+ ++ L T L++ H + +D G ++E G+ +
Sbjct: 187 EPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDT 246
Query: 578 L 578
+
Sbjct: 247 I 247
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 79.2 bits (196), Expect = 3e-15
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 24/228 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ +S S++ + + I + L+G SG GK+TV +L+ G I +
Sbjct: 15 VELRGISKSFDGK-EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG-----NPNASDQELCA-AVEV 469
DGQDI + E + + + Q LF + T+ N+ +G P A A+ +
Sbjct: 74 DGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRM 131
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
QL+ F + P +LSGG++QRV+IARA++ P +++ DE+ S+LD
Sbjct: 132 VQLEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 530 RHIQTALATLSK--NRTTLVIAH-RLSTITDADNIIVFDQGTVVESGS 574
+ +Q L L + T + + H + +T +D I+V G + + G+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 79.0 bits (195), Expect = 3e-15
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 28/241 (11%)
Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
+ +V N++ + + I ++ I L+G SG GK+TV +L+ L G
Sbjct: 3 QKNFVVLKNITKRFGSNTVI-DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 413 IITIDGQDIKKITKESLRQ-TIGIIPQDTILF-NDTLRYNILYG-----NPNAS-DQELC 464
I IDG+D+ T S++Q I ++ Q LF + +L N+ YG P Q +
Sbjct: 62 QIFIDGEDV---THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK 118
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGL-KLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
A+E+ L F +R + ++SGG++QRV++ARA++ P +++FDE S+
Sbjct: 119 EALELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 524 LDIITERHIQTALATLSK--NRTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLIS 580
LD R ++ + L + N T+L + H S +D +IV ++G +++ GS + L
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226
Query: 581 Q 581
Q
Sbjct: 227 Q 227
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 78.9 bits (195), Expect = 3e-15
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 20/219 (9%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ KGI F + + AL+G +G GKST+ K++ + G + I G ++T +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP-AKAH 84
Query: 432 TIGI--IPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
+GI +PQ+ +LF N +++ NIL+G P +A L + L D+ G
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-DL----DSSAG 139
Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII-TERHIQTALATLSKNRTTLV 547
L ++Q V I R ++++ I+I DE T+SL TER L++ +
Sbjct: 140 ----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF 195
Query: 548 IAHRLSTITD-ADNIIVFDQGTVVESG-----SHENLIS 580
I+H+L I AD I V GT+ SG S +++I
Sbjct: 196 ISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQ 234
Score = 64.3 bits (157), Expect = 8e-11
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLRQ 431
F+ IS E+ + L G G G++ +A+ LY L +GG I ++G++I + T + L +
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338
Query: 432 TIGIIPQD---TILFNDT-LRYNI---LYGNPNASDQELCAAVEVAQLKSFIMKLP---N 481
+ +P+D + L+ D L +N+ + + A E A L+ + L N
Sbjct: 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKP---ARENAVLERYRRALNIKFN 395
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
+ LSGG +Q+V IA+ + +P ++I DE T +D+ I + +++
Sbjct: 396 HAEQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451
Query: 542 -NRTTLVIAHRLSTITD-ADNIIVFDQG 567
N L I+ L I AD ++V QG
Sbjct: 452 QNVAVLFISSDLEEIEQMADRVLVMHQG 479
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 78.8 bits (194), Expect = 4e-15
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I VS SY + +SF IA + L+G +G GKST+A++L + G IT+
Sbjct: 5 IDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 417 DGQDIKKITKESLRQTIGIIPQ-DTILFNDTLRYNIL-YGNP-NASDQELCAAV----EV 469
G+ + + + R IG++PQ D + T+R N+L +G S +E+ A + E
Sbjct: 64 LGEPVPSRARLA-RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEF 122
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
A+L+S D V LSGG K+R+++ARA++ +P ++I DE T+ LD
Sbjct: 123 ARLES-------KADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHA 170
Query: 530 RHI--QTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
RH+ + + L++ +T L+ H + D + V + G + G LI +
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 78.5 bits (194), Expect = 4e-15
Identities = 60/238 (25%), Positives = 115/238 (48%), Gaps = 32/238 (13%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ ++++ Y+H F + ++ A++G SG GKST+ L+ G +T+
Sbjct: 2 LKLTDITWLYHHLPMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NPNA--SDQELCAAVEVAQ- 471
+GQD R+ + ++ Q+ LF+ T+ NI G NP + + +A+
Sbjct: 59 NGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQ 116
Query: 472 --LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
++ + +LP +LSGG++QRV++AR +++ PI++ DE S+LD
Sbjct: 117 MGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
Query: 530 RHIQTALATLSKNR--TTLVIAHRLSTITDADNI----IVFDQGTVVESGSHENLISQ 581
+ + T ++ + + R T L+++H L DA I +V G + G + L+S
Sbjct: 166 QEMLTLVSQVCQERQLTLLMVSHSLE---DAARIAPRSLVVADGRIAWDGPTDELLSG 220
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 76.8 bits (189), Expect = 1e-14
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 18/186 (9%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLY-RLY--DIKGGIITIDGQDIKKITKES 428
I G++ +P + A++G SG GKST+ L R+ + G I+ + K TK+
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNR----KPTKQI 138
Query: 429 LRQTIGIIPQDTILF-----NDTLRYNILYGNPNA-SDQELCAAVEVAQLKSFIMKLPNG 482
L++T G + QD IL+ +TL + L P + + QE E + + K N
Sbjct: 139 LKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN- 196
Query: 483 YDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
T++G ++ +SGGE++RVSIA +L NP ++I DE TS LD + L +L++
Sbjct: 197 --TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254
Query: 542 NRTTLV 547
T+V
Sbjct: 255 KGKTIV 260
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 77.0 bits (189), Expect = 1e-14
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 14/232 (6%)
Query: 352 IKNGHIVFN--NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408
I H VF V Y + + +I K A IG SG GKST+ + R+ D
Sbjct: 14 INPDHSVFEVEGVKVFYGGFLALVD-VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDL 72
Query: 409 IKG----GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG-NPNASDQ 461
I G G + ++I +I LR+ +G++ Q F ++ NI + N
Sbjct: 73 IPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKG 132
Query: 462 ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
L VE + ++ I + E+G LSGG++QR+ IARAI P +++ DE
Sbjct: 133 NLDELVEDSLRRAAIW---EEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPC 189
Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
S+LD I+ R ++ L + T +++ H + + + F + E G
Sbjct: 190 SALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 76.7 bits (189), Expect = 1e-14
Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 42/203 (20%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ----DIKKITK- 426
+ K +S + + AL G SG GKST+ K LY Y G I + + D+ + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 427 ---ESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCA--------AVEVAQLK-- 473
E R+TIG + Q F + P S E+ A E A+ +
Sbjct: 83 EVLEVRRKTIGYVSQ----FLRVI--------PRVSALEVVAEPLLERGVPREAARARAR 130
Query: 474 SFIMKLPNGYDTVVGERGLKL-----SGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
+ +L + ER L SGGE+QRV+IAR + + PI++ DE T+SLD
Sbjct: 131 ELLARLN------IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 529 ERHIQTALATLSKNRTTLV-IAH 550
+ + +A L+ I H
Sbjct: 185 RQVVVELIAEAKARGAALIGIFH 207
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 76.7 bits (189), Expect = 2e-14
Identities = 53/232 (22%), Positives = 111/232 (47%), Gaps = 19/232 (8%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I ++++ Y N + +SFE + +G +G GKST K++ G + +
Sbjct: 3 IRVSSLTKLYGTQNAL-DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDT-----LRYNI-LYGNPNASDQELCAAVEVA 470
G+D+ + KE +++ IG +P+ L+ D L++ +YG ++ V
Sbjct: 62 CGEDVLQNPKE-VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVE 115
Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
++ + P + + G+ LS G +QRV +A+A++ +P ++I DE T+ LD
Sbjct: 116 EMIELVGLRPEQHKKI-GQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLV 170
Query: 531 HIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
I+ + + K++T ++ H + + D +I+ ++G +V + L +
Sbjct: 171 EIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 76.2 bits (187), Expect = 2e-14
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI---KKITKES---- 428
I+ +I + TALIG SG GKST + L R+ D+ GI I+G I K I +
Sbjct: 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGI-KIEGNVIYEGKNIYSNNFDIL 84
Query: 429 -LRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
LR+ IG++ Q F ++ NI YG + ++L VE + KS L N
Sbjct: 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKS---ALWNEVK 141
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT 544
+ L LSGG++QR+ IAR + P +I+ DE TS+LD I+ I+ + L ++ T
Sbjct: 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYT 201
Query: 545 TLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
+++ H + +D F G + E S + L
Sbjct: 202 IIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 75.4 bits (185), Expect = 3e-14
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 10/195 (5%)
Query: 383 SKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTIL 442
++ TA +G +G GK+T +L L G + + G+DI+ +++RQ++G+ PQ IL
Sbjct: 956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNIL 1014
Query: 443 FND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQR 501
F+ T+ +IL+ Q + E AQL+ M G E LSGG +++
Sbjct: 1015 FHHLTVAEHILF-----YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRK 1069
Query: 502 VSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD--AD 559
+S+A A + + +++ DE TS +D + R I L RT ++ H + D D
Sbjct: 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE-ADLLGD 1128
Query: 560 NIIVFDQGTVVESGS 574
I + QG + SG+
Sbjct: 1129 RIAIISQGRLYCSGT 1143
Score = 48.9 bits (116), Expect = 4e-06
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ- 438
+ P + L+G +G GK+T K+L + G T+ G+ I + + Q +G PQ
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD-VHQNMGYCPQF 2020
Query: 439 ---DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLS 495
D +L Y LY E V ++S + L D + G S
Sbjct: 2021 DAIDDLLTGREHLY--LYARLRGVPAEEIEKVANWSIQSLGLSLYA--DRLAG----TYS 2072
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRL 552
GG K+++S A A++ PP+++ DE T+ +D R + T ++ + + R ++ +H +
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 75.3 bits (185), Expect = 4e-14
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 22/239 (9%)
Query: 357 IVFNNVSFSYNHHNCIFK----GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
I F NV + Y+ + K ISFE+ AL+G +G GKST+ + L G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 413 IITIDGQDIKKITK----ESLRQTIGIIPQ--DTILFNDTLRYNILYGNPN--ASDQELC 464
ITI G I T + LR+ + ++ Q + LF +T+ ++ +G N S+ E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE-- 120
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERG-LKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
A E A ++ K+ G + + +LSGG+ +RV+IA + P I+ DE +
Sbjct: 121 -AKEKA--LKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 524 LDIITERHIQTALATLSK-NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
LD + + K T +++ H + + + AD+++V + G +++ S + + S
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 75.2 bits (185), Expect = 4e-14
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432
K ++ + P + AL+GE+G GKST+ K+L +++ G ITI+ + K+ K + +
Sbjct: 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
Query: 433 IGIIPQDTILFND-TLRYNILYGNPNASDQELCAA--------VEVAQLKSFIMKLPNGY 483
IGII Q+ + ++ T+ N+ G +++C A + + L
Sbjct: 82 IGIIYQELSVIDELTVLENLYIG--RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT---LS 540
D V LS KQ + IA+ ++ + +II DE TSSL T + + L
Sbjct: 140 DEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSL---TNKEVDYLFLIMNQLR 192
Query: 541 KNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESG 573
K T +V I+H+L+ I D V G+ V SG
Sbjct: 193 KEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
Score = 46.3 bits (110), Expect = 2e-05
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQT 432
+ ISF + + G G G++ + L+ + GG I ++G+DI + +++++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 433 IGIIPQ---DTILF-NDTLRYNI-------------LYGNPNASDQELCAAVEVAQLKSF 475
+ I + D F N ++ N+ G + D++ A Q +
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAE---NQRELL 396
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
+K + V + +LSGG +Q+V I++ + P +IIFDE T +D+ + I
Sbjct: 397 ALKCHS-----VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451
Query: 536 LATLSKN-RTTLVIAHRLSTI-TDADNIIVFDQGTVVE 571
+ L+ + + L+++ L I T D I VF +G + +
Sbjct: 452 MRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 74.4 bits (182), Expect = 8e-14
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%)
Query: 386 TALIGESGVGKSTVAKLLYRLYD-IKG----GIITIDGQDIKKITKE-SLRQTIGIIPQD 439
T+L+G +G GK+T + L R+ D + G G + + G+ I R+ +G++ Q
Sbjct: 50 TSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109
Query: 440 TILFNDTLRYNILYGNPNASDQELCAAVE---VAQLKSFIMKLPNGYDTVVGERGLKLSG 496
F ++ N+L G +L E VAQ + + L + + + +LSG
Sbjct: 110 PNPFPMSIMDNVLAG---VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG 166
Query: 497 GEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTIT 556
G++Q + +AR + NP +++ DE TS+LD T I+ + +L+ T +++ H L+
Sbjct: 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA 226
Query: 557 D-ADNIIVFDQGTVVESGSHENLIS 580
+D +F G +VE G E L S
Sbjct: 227 RISDRAALFFDGRLVEEGPTEQLFS 251
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 74.1 bits (182), Expect = 9e-14
Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
++++Y+ KGI+ I + TA++G +G GKST+ + L + G I DG+
Sbjct: 10 ELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP 69
Query: 421 IKKITKE--SLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQLKS 474
I K LR+++G++ Q D LF+ ++ ++ +G N + E+ V+ A ++
Sbjct: 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT 129
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
I L + + LS G+K+RV+IA ++ P +++ DE T+ LD + I
Sbjct: 130 GIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK 182
Query: 535 ALATLSKNR-TTLVIA-HRLSTIT-DADNIIVFDQGTVVESGS 574
L + K T++IA H + + DN+ V +G V+ G+
Sbjct: 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 74.0 bits (182), Expect = 9e-14
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 25/194 (12%)
Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427
H I G+ + + ALIGESG GKST+ +L L D G +++ GQ + ++ +E
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80
Query: 428 ---SLR--------QTIGIIPQDTILFNDTLRYNILYG-NPNASDQELCAAVEVAQLKSF 475
LR Q+ +IP L N L +L G + S A +E L
Sbjct: 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELP-ALLRGESSRQSRNGAKALLEQLGLGKR 139
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
+ LP +LSGGE+QRV++ARA P ++ DE T +LD T I
Sbjct: 140 LDHLPA-----------QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 536 LATLSKNR-TTLVI 548
L +L++ TTL++
Sbjct: 189 LFSLNREHGTTLIL 202
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 73.6 bits (181), Expect = 1e-13
Identities = 76/366 (20%), Positives = 144/366 (39%), Gaps = 64/366 (17%)
Query: 220 VFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVIT 279
F L+ + +F L+ ++KY +++G + +
Sbjct: 307 SFYRLVEH--LNLIIKFRFSYGFLDNIVAKY------TWSAVGLVAVSIPIFDKTHP--A 356
Query: 280 MIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRD-SRQSFI--EIEELLNILN 336
+ S E+ + +F LL + A L L RD +R + ++ LL +L+
Sbjct: 357 FLEMSE-----EELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411
Query: 337 -------------EKIEIQNAVNSKDLKIKNGHIV-------FNNVSFSYNHHNCIFKGI 376
E + + +L G + F N+ + + + + +
Sbjct: 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESL 471
Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGII 436
SFE+ + G +G GKS++ ++L L+ + GG +T + + +
Sbjct: 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYV 520
Query: 437 PQDTILFNDTLRYNILYGNPNA---------SDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
PQ + TLR I+Y P++ SD++L ++ QL + I++ G+ V
Sbjct: 521 PQRPYMTLGTLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNVQL-THILEREGGWSAVQ 577
Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLV 547
+ LSGGEKQR+++AR P I DE TS++ + E ++ T
Sbjct: 578 DWMDV-LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR--EFGITLFS 634
Query: 548 IAHRLS 553
++HR S
Sbjct: 635 VSHRKS 640
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 73.5 bits (181), Expect = 2e-13
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ NV+ +Y I K I+ +I + +G SG GKST+ +++ L DI G + I
Sbjct: 4 VTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG------NPNASDQELCAAVEV 469
+ + + + +G++ Q L+ + ++ N+ +G +Q + EV
Sbjct: 63 GEKRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
QL + + P LSGG++QRV+I R ++ P + + DE S+LD
Sbjct: 121 LQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Query: 530 RHIQTALATLSK--NRTTLVIAH-RLSTITDADNIIVFDQGTVVESG 573
++ ++ L K RT + + H ++ +T AD I+V D G V + G
Sbjct: 170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 72.7 bits (178), Expect = 2e-13
Identities = 117/578 (20%), Positives = 215/578 (37%), Gaps = 64/578 (11%)
Query: 19 MWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVI 78
+ I + +A ++ I + E+ + Q + S+ + ++
Sbjct: 12 LRSPFPAITAFSIALGLAGGLAIIALLASINNAIH--EENFLGQGS---LFSFGGLCLLA 66
Query: 79 LITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSS 138
L+ G HI L + + + ++ R + + L+
Sbjct: 67 LLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEI--------DRRGAHNLIPLLTH 118
Query: 139 AISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIIT 198
I I + I I + L I F I A+L Y + V + A+T+ + T
Sbjct: 119 DIDQ-INAFLFIFPPIAIAL--AIFFFCI--AYLAY----LSVPMFAITISAIIIGTAAQ 169
Query: 199 SNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYI---SKYKESAI 255
+G K + E D F +++ +I+ + + +ESA
Sbjct: 170 LLAFMGGFKFFHAARDE-----EDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224
Query: 256 SVA----TSLGWL----NFGQGLIFSIGMVITMIISSHAVY--IGEQTVGDFV----FIN 301
++A + NFGQ L F ++I + + A++ I + FV +I
Sbjct: 225 NIADLHIIEILIFIAAENFGQLLFF---LLIGCALFAAAMFASIDAAAISAFVLALLYIK 281
Query: 302 TLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKN--GHIVF 359
L L L IL + + Q + E N ++E+ +A N L I
Sbjct: 282 GPLEMLVSALPILAQA-QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIEL 340
Query: 360 NNVSFSY----NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
+V + I IA ++GE+G GKST+AKL LY + G I
Sbjct: 341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400
Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+DG + +++ R I D LF+D + + +AS ++ ++
Sbjct: 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD---EGEHASLDNAQQYLQRLEIADK 457
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
+ G+ T LS G+++R+++ A L++ PI++FDE + D +R
Sbjct: 458 VKIEDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEE 512
Query: 536 LATLSKNR--TTLVIAHRLSTITDADNIIVFDQGTVVE 571
L K + T ++I+H AD II G +V+
Sbjct: 513 LLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 72.4 bits (178), Expect = 3e-13
Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 34/224 (15%)
Query: 374 KGISFEIAPSKKTALIGESGVGKS-TVAKLLYRL---YDIKGGIITIDGQDIKKITKESL 429
G+S + + AL+G SG GKS T A L L G + +DG+ + +L
Sbjct: 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---PVAPCAL 76
Query: 430 R-QTIGIIPQDT-ILFN----------DTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
R + I I Q+ FN +T G P A D L AA+E L++
Sbjct: 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCL---ALGKP-ADDATLTAALEAVGLEN--- 129
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
V+ ++SGG QR+ IA A+L P II DE T+ LD++ + I L
Sbjct: 130 -----AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLE 184
Query: 538 TLSKNRT--TLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
++ + R L++ H + + AD++ V G +VE G E L
Sbjct: 185 SIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 72.4 bits (178), Expect = 3e-13
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 28/236 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N ++ Y H +F I+ + + L+G SG GKS++ ++L L + G + I
Sbjct: 3 IQLNGINCFYGAHQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 417 DGQ--DIKKITKE----SLRQTIGIIPQDTILF-NDTLRYN-------ILYGNPNASDQE 462
G D K + LR+ +G++ Q L+ + T++ N +L + + +
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR 121
Query: 463 LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
+E +LK + + P L LSGG++QRV+IARA++ P +++FDE T+
Sbjct: 122 AEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 523 SLDIITERHIQTALATLSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESGSHE 576
+LD I + + L++ T VI H + A ++ + G +VE G
Sbjct: 171 ALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 72.2 bits (178), Expect = 3e-13
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 371 CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR 430
+F G+SF +A + L G +G GK+T+ +L+ L G I +DG DI
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 431 QTIGIIPQDTILFNDTLRYNI-----LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485
+G ++ + T+ N+ G AV +A + LP GY
Sbjct: 76 HYLG--HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP----LAHLPFGY-- 127
Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
LS G+K+RV++AR ++ N PI I DE T++LD A L
Sbjct: 128 --------LSAGQKRRVALARLLVSNRPIWILDEPTAALD----AAAVALFAEL 169
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 72.1 bits (177), Expect = 4e-13
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG------------QDI 421
K +SF + + A+IGE+G GKST+AK+L + + G + ID Q I
Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89
Query: 422 KKITKE---SL--RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAV-EVAQLKSF 475
+ I ++ SL RQ I I + N L P ++++ + +V L
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDL-------EPEQREKQIIETLRQVGLLPDH 142
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
P+ L+ G+KQR+ +ARA++ P +II DEA +SLD+ +
Sbjct: 143 ASYYPH-----------MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191
Query: 536 LATLSKNRT---TLVIAHRLSTITDADNIIVFDQGTVVESGS 574
+ L + + V H +D ++V QG VVE GS
Sbjct: 192 MLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 71.3 bits (175), Expect = 8e-13
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 36/230 (15%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL-- 429
+ KGIS +I + A++G SG GKST+ +L L G + GQD+ + ++L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 430 --RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA--VEV----------AQLKSF 475
R+ G I Q RY++L L AA VEV +L
Sbjct: 83 LRREHFGFIFQ---------RYHLL--------SHLTAAQNVEVPAVYAGLERKQRLLRA 125
Query: 476 IMKLPN-GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
L G + V + +LSGG++QRVSIARA++ +I+ DE T +LD + +
Sbjct: 126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185
Query: 535 ALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVV-ESGSHENLISQG 582
L L + T +++ H A+ +I G +V + E + G
Sbjct: 186 ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAG 235
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 71.2 bits (174), Expect = 8e-13
Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 366 YNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK--- 422
Y H + KG+S + ++IG SG GKST + + L G I ++GQ I
Sbjct: 15 YGEHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVR 73
Query: 423 ----------KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
K LR + ++ Q FN +L A Q L + + A+
Sbjct: 74 DKDGQLKVADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEAPIQVLGLSKQEARE 130
Query: 473 KSFIMKLPNGYD-TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD--IITE 529
++ G D G+ + LSGG++QRVSIARA+ P +++FDE TS+LD ++ E
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 530 -RHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF-DQGTVVESGSHENLISQ 581
I LA + +T +V+ H + + ++F QG + E G+ E L
Sbjct: 191 VLRIMQQLA--EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 71.0 bits (174), Expect = 9e-13
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG-----GIIT 415
V + NH + KG+ +I + AL+G SG GKST+ + RL ++ G +
Sbjct: 11 RVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 416 IDGQDI--KKITKESLRQTIGII-------PQDTILFNDT--LRYNILYGNPNASDQELC 464
+ G++I + +R+ +G++ P TI N ++ N L + D+ +
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
A++ A L + N Y + LSGG++QR+ IARA+ P I++ DE T+++
Sbjct: 128 WALKKAALWDEVKDRLNDYPS-------NLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 525 DIITERHIQTALATLSKNRTTLVIAH 550
D + I+ L L K T +++ H
Sbjct: 181 DPVGTAKIEELLFELKKEYTIVLVTH 206
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 70.3 bits (173), Expect = 1e-12
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 39/235 (16%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIK-KITKES 428
+S ++ + +L GE+G GKST+ K+L + Y+ G I +G++++ +++
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE---GEIIFEGEELQASNIRDT 79
Query: 429 LRQTIGIIPQDTILFND-TLRYNILYGNP---------NASDQELCAAVEVAQLKSFIMK 478
R I II Q+ L + ++ NI GN +A A +AQLK I
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR--AQKLLAQLKLDI-- 135
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
T VG L G++Q V IA+A+ K ++I DE T+SL TE L
Sbjct: 136 ---NPATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASL---TESETAVLLDI 185
Query: 539 L----SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
+ + + I+H+L+ + +D I V G + + + ++ I T M
Sbjct: 186 IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM-TEDDIITMM 239
Score = 39.5 bits (93), Expect = 0.003
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 30/133 (22%)
Query: 412 GIITIDGQDIK-KITKESLRQTI----------GIIPQDTILFNDTL-------RYNILY 453
G I IDG+ +K + ++++ Q I GI+P + N TL + +
Sbjct: 318 GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRI- 376
Query: 454 GNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513
+ + + + +LK +K + + +LSGG +Q+ +A+ +L NP
Sbjct: 377 ---DDAAELKTILESIQRLK---VKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPK 425
Query: 514 IIIFDEATSSLDI 526
I+I DE T +D+
Sbjct: 426 ILILDEPTRGIDV 438
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 70.2 bits (172), Expect = 1e-12
Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 339 IEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST 398
+EI+N S D G ++VS + I+KG F AL+G SG GKST
Sbjct: 20 LEIRNLTKSFD-----GQHAVDDVSLT------IYKGEIF--------ALLGASGCGKST 60
Query: 399 VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG--N 455
+ ++L G I +DG D+ + ++ I ++ Q LF + T+ NI +G
Sbjct: 61 LLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118
Query: 456 PNASDQELCAAVE----VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN 511
E+ + V + ++ F + P+ +LSGG++QRV++AR++ K
Sbjct: 119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALARSLAKR 167
Query: 512 PPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAH-RLSTITDADNIIVFDQGT 568
P +++ DE +LD +Q + + + T +++ H + +T A I + ++G
Sbjct: 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
Query: 569 VVESGSHENL 578
V+ G E +
Sbjct: 228 FVQIGEPEEI 237
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 69.8 bits (171), Expect = 2e-12
Identities = 64/269 (23%), Positives = 107/269 (39%), Gaps = 57/269 (21%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGII-------------- 414
+ K ISF I + ++G SG GKS + +L + G II
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 415 ------------------TIDGQDIKKITKESLRQTIGIIPQDTILF--NDTLRYNILYG 454
+D ++ + +R+ I I+ Q T +DT+ N+L
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 455 NPNA---SDQELCAAVEV---AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAI 508
+ + AV++ QL I + LSGGEKQRV +AR +
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR-----------DLSGGEKQRVVLARQL 183
Query: 509 LKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFD 565
K P + + DE T +LD T + + AL K + ++ +H I D +D I +
Sbjct: 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE 243
Query: 566 QGTVVESGSHENLISQGGIYTSMWKKQCE 594
G + E G+ + +++ S +K+CE
Sbjct: 244 NGEIKEEGTPDEVVAVFMEGVSEVEKECE 272
Score = 66.0 bits (161), Expect = 3e-11
Identities = 54/222 (24%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRL-------YDIKGGIITIDGQDIKKITKE 427
+S E+ + ++G SG GK+T++K++ + +++ G +D +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 428 SLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
++ IGI+ Q+ L+ +L A EL E+A++K+ I G+D
Sbjct: 362 RAKRYIGILHQEYDLYPHR---TVLDNLTEAIGLEL--PDELARMKAVITLKMVGFDEEK 416
Query: 488 GERGL-----KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL--ATLS 540
E L +LS GE+ RV++A+ ++K P I+I DE T ++D IT+ + ++ A
Sbjct: 417 AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476
Query: 541 KNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
+T ++++H + + D D + G +V+ G E ++ +
Sbjct: 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 69.8 bits (171), Expect = 2e-12
Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 23/179 (12%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
VSF+ + CIF IS + K TA++G SG+GK+T+ +L+ G I DG++
Sbjct: 12 GVSFTRGNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70
Query: 421 IKKITKESL---RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
I +++ L R+ + ++ Q LF D + N+ Y P +L A + L S +
Sbjct: 71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY--PLREHTQLPAPL----LHSTV 124
Query: 477 -MKLPNGYDTVVGERGL------KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
MKL VG RG +LSGG +R ++ARAI P +I+FDE D IT
Sbjct: 125 MMKL-----EAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 69.0 bits (169), Expect = 3e-12
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 28/232 (12%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I N+ S+ + IS +I + AL+G SG GK+T+ +++ L G I
Sbjct: 3 IEIANIKKSFGRTQ-VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG--------NPNAS--DQELCA 465
G D+ ++ + +G + Q LF T+ NI +G PNA+ ++
Sbjct: 62 HGTDVSRLHARDRK--VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQ 119
Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
+E+ QL + P +LSGG+KQRV++ARA+ P I++ DE +LD
Sbjct: 120 LLEMVQLAHLADRYPA-----------QLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
Query: 526 IITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
+ ++ L L + T++ + H + AD ++V QG + ++G+
Sbjct: 169 AQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 68.3 bits (168), Expect = 6e-12
Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 40/233 (17%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ V SY+ + KGI ++A + L+G SG GKST+ +++ L I G I I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG--NPNASDQELCAAV-EVAQ- 471
G+ + ++ E + I ++ Q+ L+ + ++R N+ YG E+ V E A+
Sbjct: 64 GGRVVNEL--EPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARI 121
Query: 472 --LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD---- 525
L+ + + P +LSGG++QRV++ RAI++ P + +FDE S+LD
Sbjct: 122 LELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170
Query: 526 ------IITERHIQTALATLSKNRTTLVIAH-RLSTITDADNIIVFDQGTVVE 571
I + + L T T+L + H ++ +T AD ++V + G V E
Sbjct: 171 VQMRLEI---QRLHRRLKT-----TSLYVTHDQVEAMTLADRVVVMNGG-VAE 214
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 67.4 bits (165), Expect = 9e-12
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ NVS S+ + +S E+ P K L+G +G GKST+ +++ G++
Sbjct: 5 VSLENVSVSFGQRR-VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-------GLVAP 56
Query: 417 DGQDIKKITKESLRQTIGIIPQ----DTILFNDTLRYNILYGNPNASDQELCAA---VEV 469
D IK+ LR IG +PQ DT L R+ L P +++ A V+
Sbjct: 57 DEGVIKR--NGKLR--IGYVPQKLYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQA 110
Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
L M+ KLSGGE QRV +ARA+L P +++ DE T +D+
Sbjct: 111 GHLIDAPMQ--------------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 67.5 bits (164), Expect = 9e-12
Identities = 57/245 (23%), Positives = 117/245 (47%), Gaps = 32/245 (13%)
Query: 357 IVFNNVSFSYNHHN-----CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
I F V+++Y ++ +F I E+ TALIG +G GKST+ + L L
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 412 GIITIDGQDIKKITKES----LRQTIGIIPQ--DTILFNDTLRYNILYGNPN----ASDQ 461
G +T+ + +K+ +R+ +G++ Q ++ LF +T+ ++ +G N
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 462 ELCAAVEVAQL---KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518
E AA ++ + F K P +LSGG+ +RV+IA + P +++ D
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSP-----------FELSGGQMRRVAIAGILAMEPEVLVLD 169
Query: 519 EATSSLDIITERHIQTALATLSKN-RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576
E T+ LD + ++ ++ +T +++ H + + D AD + + ++G ++ G+
Sbjct: 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
Query: 577 NLISQ 581
++ +
Sbjct: 230 DVFQE 234
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 66.9 bits (164), Expect = 1e-11
Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 27/242 (11%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407
LKIK+ H+ + I KG++ + + A++G +G GKST++K + + Y
Sbjct: 1 LKIKDLHVSVEDKE--------ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY 52
Query: 408 DIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDT-----ILFNDTLR--YNILYGNPNAS 459
++ G I GQD+ ++ E R + + Q + + LR N
Sbjct: 53 EVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEE 112
Query: 460 DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK--LSGGEKQRVSIARAILKNPPIIIF 517
+L +++ + K ++ + + R + SGGEK+R I + L P + I
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEF----LNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168
Query: 518 DEATSSLDIITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGS 574
DE S LDI + + + L +R+ L+I H RL D + V G +V+SG
Sbjct: 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228
Query: 575 HE 576
E
Sbjct: 229 VE 230
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 66.0 bits (161), Expect = 2e-11
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 46/239 (19%)
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI----------ITIDG 418
H I + +S I P + TAL+G +G GKST+ K L D+ GG +T++G
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG--DLTGGGAPRGARVTGDVTLNG 70
Query: 419 QDIKKITKESLRQTIGIIPQDT-ILFNDTLRYNILYGN-PNAS--------DQELC-AAV 467
+ + I L + ++PQ F + R +L G P+A D E+ A+
Sbjct: 71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQAL 130
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILK---------NPPIIIFD 518
+A G +VG LSGGE RV AR + + P ++ D
Sbjct: 131 ALA-----------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLD 179
Query: 519 EATSSLDIITERHIQTALATLSK--NRTTLVIAHRLS-TITDADNIIVFDQGTVVESGS 574
E T++LD+ + + + L++ N L I H + AD I + G +V G+
Sbjct: 180 EPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 65.6 bits (160), Expect = 3e-11
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR--Q 431
KG++ I + +LIG SG GKST+ L+ L G + ++G+ I + + + Q
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQ 61
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVE----VAQLKSFIMKLPNGYDTVV 487
++P T+ N L + + P+ S E A VE + L K P
Sbjct: 62 NYSLLPWLTVRENIALAVDRV--LPDLSKSERRAIVEEHIALVGLTEAADKRPG------ 113
Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--TT 545
+LSGG KQRV+IARA+ P +++ DE +LD +T ++Q L + + T
Sbjct: 114 -----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 546 LVIAH 550
L++ H
Sbjct: 169 LMVTH 173
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 65.6 bits (160), Expect = 4e-11
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
NVSF + +S K T LIG +G GKST+ K+L R G I +D Q
Sbjct: 15 RNVSFRVPGRT-LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 420 DIKKITKESLRQTIGIIPQDTILFND-TLR---------YNILYGNPNASDQE-LCAAVE 468
++ + ++ + + +PQ T+R ++ G A+D+E + A+
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
+ LK +L + LSGGE+QR IA + ++ ++ DE TS+LDI
Sbjct: 134 LVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
Query: 529 ERHIQTALATLSKNRTTLVIAHRLSTITDA----DNIIVFDQGTVVESGSHENLI 579
+ + + LS+ R VIA L I A D ++ G ++ G+ L+
Sbjct: 183 QVDVLALVHRLSQERGLTVIA-VLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 65.0 bits (159), Expect = 5e-11
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 35/225 (15%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI--KGGIITIDGQDIKKITKESL-RQT 432
+S E+ + L+G +G GKST LL R+ + G I GQ ++ + L R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 433 IGIIPQDTILFN-DTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGER 490
+ Q T F +Y L+ + + +A+ EVA+ KL R
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG---------R 122
Query: 491 GL-KLSGGEKQRVSIARAILK-----NP--PIIIFDEATSSLDIITERHIQTALATL--- 539
+ +LSGGE QRV +A +L+ NP +++ DE +SLD+ Q AL L
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ----QAALDRLLSE 178
Query: 540 --SKNRTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
+ ++ +H L+ T+ AD + + QG ++ SG + +++
Sbjct: 179 LCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 64.7 bits (158), Expect = 6e-11
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
++ N VS Y + + I + A++G SG GKST+ +LL L G + +
Sbjct: 13 LLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-L 70
Query: 417 DGQDIKKITKESLR---QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
G +E R Q ++P ++ N L L G + + AAV
Sbjct: 71 AGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG---LKGQWRDAALQALAAV------ 121
Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
G E LSGG+KQRV++ARA++ P +++ DE +LD +T +Q
Sbjct: 122 --------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 534 TALATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTV 569
+ +L + T L++ H +S + AD +++ ++G +
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 63.7 bits (155), Expect = 1e-10
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 378 FEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIP 437
+ L+G +G GK+T+ + + L G + + G K + IG +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-----GWRHIGYVP 55
Query: 438 QD---TILFNDTLRYNILYGN---------PNASD-QELCAAVEVAQLKSFIMKLPNGYD 484
Q F ++ + ++ G P +D + A+ L D
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELA-------D 108
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT 544
VGE LSGG++QRV +ARA+ P +++ DE + LD+ T+ + L+ T
Sbjct: 109 RPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164
Query: 545 TLVIA-HRLSTITDADNIIVFDQGTVVESGSHENL 578
+++ H L+ + +V G V+ G+ + L
Sbjct: 165 AILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 63.5 bits (154), Expect = 2e-10
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 25/223 (11%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ + ++ EI TA+IG +G GKST+ + L RL G + +DG+ I+ + + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 432 TIGIIPQDTILFNDTL--------RY--NILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
IG++ Q+ D RY L+ D+E AV A + I L +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEE---AVTKAMQATGITHLAD 138
Query: 482 -GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
DT LSGG++QR IA + + I++ DE T+ LDI + + L+ L+
Sbjct: 139 QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190
Query: 541 KNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
+ + T + H L+ A ++I +G +V G+ + +++
Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 63.2 bits (154), Expect = 2e-10
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES--LRQT 432
I+ + + ++G SG GK+T+ L+ + G IT+DG+ ++ E + Q
Sbjct: 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78
Query: 433 IGIIP----QDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL-KSFIMKLPNGYDTVV 487
G++P QD + F L + ++ V + K +I
Sbjct: 79 EGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW---------- 127
Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL--SKNRTT 545
+LSGG++QRV IARA+ NP +++ DE +LD T +QT L L +
Sbjct: 128 -----QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 546 LVIAH 550
L+I H
Sbjct: 183 LLITH 187
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 63.3 bits (154), Expect = 2e-10
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 44/229 (19%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD--IKKITKES-- 428
+ +SF++ P + ++GESG GKST+ L G T + ++ + S
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 429 -----LRQTIGIIPQDTILFNDTLRYNIL----------------YGNPNASDQELCAAV 467
+R G + Q+ D LR + YGN A+ + V
Sbjct: 79 ERRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEV 135
Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
E+ + I LP + SGG +QR+ IAR ++ P ++ DE T LD+
Sbjct: 136 EIDPTR--IDDLPRAF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTIT-DADNIIVFDQGTVVESG 573
+ + L L ++ +++ H L A ++V QG VVESG
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 62.6 bits (152), Expect = 3e-10
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 18/218 (8%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLR 430
+ + +S + + L+G +G GK+T ++ + G I ID +DI + R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 431 QTIGIIPQDTILFNDTLRYNILYG-----NPNASDQELCAAVEVAQLKSF-IMKLPNGYD 484
+ IG +PQ+ +F Y+ L + +++Q A E+ ++ F I L +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL--MEEFHIEHLRDSM- 134
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT 544
G LSGGE++RV IARA+ NP I+ DE + +D I+ I+ + L +
Sbjct: 135 ------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 545 TLVIA-HRL-STITDADNIIVFDQGTVVESGSHENLIS 580
++I H + T+ + + QG ++ G+ ++
Sbjct: 189 GVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 61.8 bits (150), Expect = 5e-10
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 26/214 (12%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLY---DIKGGIITIDGQDIK-KITKESLR 430
GI E+ P + L GE+G GKST+ K+L +Y G I G +K +++ R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIY-WSGSPLKASNIRDTER 77
Query: 431 QTIGIIPQDTILFND-TLRYNILYGNP---NASDQELCAAVEVAQLKSFIMKLPNGYDT- 485
I II Q+ L + ++ NI GN A A+ ++L T
Sbjct: 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR 137
Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SK 541
VG+ G GG++Q V IA+A+ K ++I DE +SSL TE+ + L + +
Sbjct: 138 PVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL---TEKETEILLDIIRDLKAH 190
Query: 542 NRTTLVIAHRLSTITDADNIIVFDQGTVVESGSH 575
+ I+H+L+ + V D V+ G H
Sbjct: 191 GVACVYISHKLNEVK-----AVCDTICVIRDGQH 219
Score = 44.8 bits (106), Expect = 6e-05
Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK-GGIITIDGQDIK-KITKESLRQTI 433
+SF + + + G G G++ + + L+ Y K G + I+G+ + + +++R I
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 434 ----------GIIPQDTILFNDTL----RYNILYGNPNASDQELCAAVEVAQL--KSFIM 477
GI+P + N TL + +A+ + + +L K+
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK-MRIDAAAELQIIGSAIQRLKVKTASP 397
Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
LP G +LSGG +Q+ +A+ +L NP ++I DE T +D+ + I +
Sbjct: 398 FLPIG----------RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447
Query: 538 TLSKNRTTL-VIAHRLSTITD-ADNIIVFDQGTV 569
L++ + V++ L+ + +D ++V +G +
Sbjct: 448 QLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 61.5 bits (150), Expect = 6e-10
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 70/225 (31%)
Query: 357 IVF--NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
++ N VS I K IS P K ++G +G GKST+ + I G+
Sbjct: 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLR-------IMAGV- 54
Query: 415 TIDGQDIKKITKESLRQ---TIGIIPQDTILFNDTL------------------RYN--- 450
D K+ E+ +G +PQ+ L + T R+N
Sbjct: 55 -----D-KEFNGEARPAPGIKVGYLPQEPQL-DPTKTVRENVEEGVAEIKDALDRFNEIS 107
Query: 451 ILYGNPNASDQELCAAVEVAQLKSFI------------------MKLPNGYDTVVGERGL 492
+ P+A L A E A+L+ I ++ P D V
Sbjct: 108 AKFAEPDADMDALLA--EQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVT---- 160
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT----ERHIQ 533
KLSGGE++RV++ R +L P +++ DE T+ LD + E+H+Q
Sbjct: 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
Score = 46.8 bits (112), Expect = 1e-05
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 329 EELLNILNEKIEIQNAVNSKDLKIKNGH------IVFNNVSFSYNHHNCIFKGISFEIAP 382
EELL+ E Q + ++ I G I N+S + + +SF++ P
Sbjct: 294 EELLSQ-----EFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD-KLLIDDLSFKLPP 347
Query: 383 SKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ--DT 440
+IG +G GKST+ +++ G I I G+ +K + + Q D
Sbjct: 348 GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVK----------LAYVDQSRDA 396
Query: 441 ILFNDTLRYNILYGNPNASDQELCAAVEV---AQLKSFIMKLPNGYD--TVVGERGLKLS 495
+ N T+ I G D EV A + F K G D VG+ LS
Sbjct: 397 LDPNKTVWEEISGGL----DIIQLGKREVPSRAYVGRFNFK---GSDQQKKVGQ----LS 445
Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAH----- 550
GGE+ RV +A+ + +++ DE T+ LD+ T R ++ AL + +VI+H
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG--CAVVISHDRWFL 503
Query: 551 -RLST 554
R++T
Sbjct: 504 DRIAT 508
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 60.8 bits (148), Expect = 9e-10
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
+ NV+F+Y + I+ I + LIG +G GKST+A LL LY + G I +
Sbjct: 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA-VEVAQLKSF 475
DG+ + E R+ + D LF+ L ++ L +E ++
Sbjct: 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG-----PEGKPANPALVEKWLERLKMAH- 436
Query: 476 IMKLPNGYDTVVGER--GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
KL + R LKLS G+K+R+++ A+ + I++ DE + D R
Sbjct: 437 --KL-----ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489
Query: 534 TALATL--SKNRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
L L +T I+H AD ++ G + E
Sbjct: 490 QVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 60.8 bits (148), Expect = 1e-09
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQT 432
G + + P + AL+GE+G GKST+ K+L +Y G I G+++ K S
Sbjct: 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80
Query: 433 IGIIPQD-TILFNDTLRYNILYGNPNASD------QELCAAVEVAQLKSFIMKLPNGYDT 485
IGII Q+ ++ T+ NI G + +++ A + L + L D
Sbjct: 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD-KLLAR--LNLRFSSDK 137
Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL-DIITERHIQTALATLSKNRT 544
+VGE LS GE+Q V IA+ + +II DE T +L D TE + S+ R
Sbjct: 138 LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG 193
Query: 545 TLVIAHRLSTITD-ADNIIVFDQG 567
+ I+HRL I + D++ VF G
Sbjct: 194 IVYISHRLKEIFEICDDVTVFRDG 217
Score = 46.5 bits (111), Expect = 2e-05
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 43/185 (23%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
N+VSF+ I G+S G G G++ + K+LY G +T+DG
Sbjct: 269 NDVSFTL-RKGEIL-GVS------------GLMGAGRTELMKVLYGALPRTSGYVTLDGH 314
Query: 420 DIKKIT-KESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCA------------- 465
++ + ++ L I I +D R ++ G + L A
Sbjct: 315 EVVTRSPQDGLANGIVYISEDR------KRDGLVLGMSVKENMSLTALRYFSRAGGSLKH 368
Query: 466 AVEVAQLKSFIM----KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
A E + FI K P+ + +G LSGG +Q+V+IAR ++ P ++I DE T
Sbjct: 369 ADEQQAVSDFIRLFNIKTPS-MEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPT 423
Query: 522 SSLDI 526
+D+
Sbjct: 424 RGVDV 428
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 60.3 bits (146), Expect = 1e-09
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 13/227 (5%)
Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
F+ VS Y + +S I + LIG +G GK+T+ L G I DG
Sbjct: 8 FDKVSAHYGKIQAL-HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66
Query: 419 QDIKKI-TKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVE-VAQLKSF 475
+DI T + +R+ + I+P+ +F+ T+ N+ G A + ++ V +L
Sbjct: 67 KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYEL--- 123
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
P ++ + +R +SGGE+Q ++I RA++ P +++ DE + L I + I
Sbjct: 124 ---FPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT 179
Query: 536 LATLSKNRTT--LVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
+ L + T LV + + AD V + G VV + + L++
Sbjct: 180 IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 59.7 bits (145), Expect = 2e-09
Identities = 62/224 (27%), Positives = 91/224 (40%), Gaps = 26/224 (11%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKST----VAKLLYRLYDIKGGIITIDGQDIKKITKE 427
I K + I P + T ++G G G ST +A + G+IT DG ++I K
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 428 SLRQTIGIIPQDTILF-----NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---L 479
R + + + F +TL + P + + M L
Sbjct: 136 -YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL 194
Query: 480 PNGYDTVVGE---RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
+ +T VG RG+ SGGE++RVSIA A L I +D AT LD T AL
Sbjct: 195 SHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 537 ATLSK--NRTTLVIAHRLSTITDA----DNIIVFDQGTVVESGS 574
T + + T LV ++ S DA D +IV +G + G
Sbjct: 253 KTSANILDTTPLVAIYQCS--QDAYELFDKVIVLYEGYQIYFGP 294
Score = 58.2 bits (141), Expect = 6e-09
Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 33/296 (11%)
Query: 248 SKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQL 307
Y + + S W NFG + F++ I+ + +Q VF L +
Sbjct: 654 DDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRA 713
Query: 308 AIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYN 367
S ++ IE E+L + E + + KD++ ++G +F+ + +Y
Sbjct: 714 K-----KAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768
Query: 368 -----HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQ 419
I + + P TAL+G SG GK+T+ +L I GG ++G+
Sbjct: 769 VKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR 828
Query: 420 DIKKITKESLRQTIGIIPQD-----TILFNDTLRYNILYGNPNA-SDQELCAAVEVAQLK 473
+ S +++IG + Q T ++LR++ P + S E VE
Sbjct: 829 PL----DSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVE----- 879
Query: 474 SFIMKL---PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIF-DEATSSLD 525
++KL + D VVG G L+ +++R++I ++ P +++F DE TS LD
Sbjct: 880 -EVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 59.8 bits (146), Expect = 2e-09
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 16/94 (17%)
Query: 483 YDTVVGERGLK---------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
D VV GL+ LSGGE QRV+IA A+L++ FDE TS LD I +R +
Sbjct: 193 LDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-IRQR-LN 250
Query: 534 TALA--TLSKNRTTLVIAHRLSTITD--ADNIIV 563
A L++ + LV+ H L + D ADN+ +
Sbjct: 251 VARLIRELAEGKYVLVVEHDL-AVLDYLADNVHI 283
Score = 56.0 bits (136), Expect = 3e-08
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 39/187 (20%)
Query: 389 IGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR-QTIGIIPQDTILFNDTL 447
+G +G+GK+T AKLL G++ D ++ K S + Q I T+
Sbjct: 371 VGPNGIGKTTFAKLL-------AGVLKPDEGEVDPELKISYKPQYIKPDYDGTV------ 417
Query: 448 RYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVVGERGLKLSGGEKQRVSI 504
++L + KS I+K L D V + LSGGE QRV+I
Sbjct: 418 -EDLLRSITDDLGSS--------YYKSEIIKPLQLERLLDKNVKD----LSGGELQRVAI 464
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALA----TLSKNRTTLVIAHRLSTITD--A 558
A + ++ + + DE ++ LD+ E+ + A A + T LV+ H + I D +
Sbjct: 465 AACLSRDADLYLLDEPSAHLDV--EQRLAVAKAIRRIAEEREATALVVDHDIYMI-DYIS 521
Query: 559 DNIIVFD 565
D ++VF+
Sbjct: 522 DRLMVFE 528
Score = 27.9 bits (63), Expect = 8.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 382 PSKKTALIGESGVGKSTVAKLL 403
K T ++G +G+GK+T K+L
Sbjct: 98 EGKVTGILGPNGIGKTTAVKIL 119
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 58.5 bits (141), Expect = 4e-09
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRL----------YDIKGGIITID 417
+ + + I + AL+G SG GKST+ + L L ++ G + +
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 418 GQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASD-QELCAAVEVAQLKSF 475
G+ + I K R G I Q L N ++ N+L G ++ C + + K
Sbjct: 75 GRLARDIRKS--RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132
Query: 476 IMKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
++ G +R LSGG++QRV+IARA+++ +I+ DE +SLD + R +
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 534 TALATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENL 578
L +++N T +V H++ + + I+ QG V GS +
Sbjct: 193 DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 58.7 bits (142), Expect = 4e-09
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I F++ SF Y +FK ++F I + A++G +G+GKST+ KL I+
Sbjct: 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKL-----------ISG 557
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGN---PNASDQELCAAVEVAQLK 473
+ Q S + + + Q + D +LY P +Q+L A L
Sbjct: 558 ELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-----RAHLG 612
Query: 474 SFIMKLPNGYDTVVGERGLK----LSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
SF V G L+ LSGG+K RV+ A+ K P I++ DE ++ LD+
Sbjct: 613 SF---------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660
Score = 37.5 bits (87), Expect = 0.011
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAH 550
SGG + R+++ARA+ P +++ DE T+ LD+ ++T L K T +V++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPK--TFIVVSH 399
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 57.9 bits (140), Expect = 7e-09
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 39/247 (15%)
Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407
L IK+ H+ + I +G++ E+ P + A++G +G GKST++ L Y
Sbjct: 2 LSIKDLHVSVED--------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDY 53
Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFNDTLRYNILYGNPNA 458
++ GG + G+D+ +++ E R GI IP + F L NA
Sbjct: 54 EVTGGTVEFKGKDLLELSPED-RAGEGIFMAFQYPVEIPGVSNQF-------FLQTALNA 105
Query: 459 ----SDQELCAAVEVAQL---KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN 511
QE + L K ++K+P D + + SGGEK+R I + +
Sbjct: 106 VRSYRGQEPLDRFDFQDLMEEKIALLKMPE--DLLTRSVNVGFSGGEKKRNDILQMAVLE 163
Query: 512 PPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGT 568
P + I DE+ S LDI + + + +L R+ +++ H R+ D + V QG
Sbjct: 164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGR 223
Query: 569 VVESGSH 575
+V+SG
Sbjct: 224 IVKSGDF 230
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 57.9 bits (140), Expect = 8e-09
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 29/210 (13%)
Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITI-DG---QDIKKITKESLR-----------QT 432
L+G SG GKS++ + + L + G + + DG D+ +LR Q
Sbjct: 55 LMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114
Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
++P T+ N + G P A ++ QL+ ++ L D GE
Sbjct: 115 FALMPWLTVEENVAFGLE-MQGMPEAERRKRVDE----QLE--LVGLAQWADKKPGE--- 164
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAH 550
LSGG +QRV +ARA + I++ DE S+LD + +Q L L N+T + ++H
Sbjct: 165 -LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSH 223
Query: 551 RL-STITDADNIIVFDQGTVVESGSHENLI 579
L + + I + + G +++ G+ E ++
Sbjct: 224 DLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 57.4 bits (139), Expect = 1e-08
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 23/161 (14%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+F+G+SF + + + G +G+GK+T+ ++L L G + +G + + E R
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 432 TI------GIIPQDTILFNDTLR-YNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
+ G+ P+ + L N L + ++G + ++ AAV + + LP
Sbjct: 75 ILYLGHLPGLKPELSALEN--LHFWAAIHGGAQRTIEDALAAVGLTGFE----DLPAAQ- 127
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
LS G+++R+++AR L P+ I DE T++LD
Sbjct: 128 ---------LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 56.7 bits (137), Expect = 2e-08
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT--LVIAH 550
+L+ GE Q+V IA A+ P ++I DE T++++ T+ I L L++N T L+I+H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 551 RLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
L ++ AD I V G VE+ + L++
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVT 248
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 56.3 bits (137), Expect = 2e-08
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 66/219 (30%)
Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
N VS I K IS P K ++G +G GKST+ + I G+
Sbjct: 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLR-------IMAGV------ 56
Query: 420 DIKKITKESLRQ---TIGIIPQD-------TILFN---------DTL-RYN---ILYGNP 456
D K+ E+ +G +PQ+ T+ N L R+N Y P
Sbjct: 57 D-KEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEP 115
Query: 457 NASDQELCAAVEVAQLKSFI------------------MKLPNGYDTVVGERGLKLSGGE 498
+A L A E +L+ I ++ P D V KLSGGE
Sbjct: 116 DADFDALAA--EQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGE 168
Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIIT----ERHIQ 533
++RV++ R +L+ P +++ DE T+ LD + E+ +
Sbjct: 169 RRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH 207
Score = 33.2 bits (77), Expect = 0.22
Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 67/234 (28%)
Query: 329 EELLNI----LNEKIEIQNAVNSKDLKIKNGH------IVFNNVSFSYNHHNCIFKGISF 378
EELL+ NE EI I G I N+S S+ + +SF
Sbjct: 296 EELLSEEYQKRNETNEIF---------IPPGPRLGDKVIEAENLSKSFGD-RLLIDDLSF 345
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG------GIITIDGQDIKKITKESLRQT 432
+ P +IG +G GKST L+++ I G G I I G+ +K
Sbjct: 346 SLPPGGIVGIIGPNGAGKST----LFKM--ITGQEQPDSGTIKI-GETVK---------- 388
Query: 433 IGIIPQ--DTILFNDTLRYNILYGNPNASDQELCAAVEV---AQLKSFIMKLPNGYD--T 485
+ + Q D + N T+ I G D E+ A + F K G D
Sbjct: 389 LAYVDQSRDALDPNKTVWEEISGGL----DIIKVGNREIPSRAYVGRFNFK---GGDQQK 441
Query: 486 VVGERGLKLSGGEKQRVSIARAILK---NPPIIIFDEATSSLDIITERHIQTAL 536
VG LSGGE+ R+ +A+ LK N +++ DE T+ LD+ T R ++ AL
Sbjct: 442 KVGV----LSGGERNRLHLAK-TLKQGGN--VLLLDEPTNDLDVETLRALEEAL 488
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 56.1 bits (136), Expect = 3e-08
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 68/241 (28%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLY-RL--------YDIKGGIITIDGQDIKK 423
+ +SF++ P + ++GESG GK+T+ L RL Y ++ G +D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDG----QLRDLYA 77
Query: 424 ITKESLRQTI-----GIIPQDTILFNDTLRYNIL----------------YGNPNASDQE 462
++ E+ R+ + G + Q D LR + YG+ A+ +
Sbjct: 78 LS-EAERRRLLRTEWGFVHQHP---RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGD 133
Query: 463 LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
VE+ + I LP + SGG +QR+ IAR ++ +P ++ DE T
Sbjct: 134 WLERVEIDAAR--IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTG 180
Query: 523 SLDIITERHIQTALATLSKNRTTLVIAHRLSTIT---D-------ADNIIVFDQGTVVES 572
LD+ +Q L L + LV L+ + D A ++V QG VVES
Sbjct: 181 GLDV----SVQARLLDLLR---GLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233
Query: 573 G 573
G
Sbjct: 234 G 234
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 55.3 bits (133), Expect = 4e-08
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
+ F Y H + + ISF + L G +G GK+T+ KL+ L + + G I + Q
Sbjct: 6 ELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS 64
Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILY----GNPNASDQELCAAVEVAQLKSFI 476
IKK +Q + + I TLR N LY ELC + L +
Sbjct: 65 IKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY- 123
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
P G LS G+K++V++ R + + + DE +LD E + T +
Sbjct: 124 ---PCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTII 167
Query: 537 ATLSKNR----TTLVIAHRLSTITDAD 559
+ ++R L+ +H+ + AD
Sbjct: 168 TKIQEHRAKGGAVLLTSHQDLPLNKAD 194
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 55.1 bits (133), Expect = 4e-08
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 26/204 (12%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
IS + + L+G +G GKST+ K++ + G I DG T++ L +
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW---TRKDLHK 71
Query: 432 TIGIIPQDTILFNDTLRYNI-----LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
+I + N T R N+ L G P++ E+ V++ T
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL---------------TN 116
Query: 487 VGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545
G++ K S G KQR+ IA A+L +P ++I DE T+ LD I + ++ + + + T
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176
Query: 546 LVI-AHRLSTITD-ADNIIVFDQG 567
+++ +H LS + AD+I + +G
Sbjct: 177 VILSSHILSEVQQLADHIGIISEG 200
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 53.9 bits (129), Expect = 1e-07
Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 60/188 (31%)
Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKG-GIITIDGQDIKKITKESLRQTIGIIPQDT 440
P + ++G G GK+T+A+ L R G G+I IDG+DI + + L I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------- 53
Query: 441 ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQ 500
VG + SG +
Sbjct: 54 ----------------------------------------------VGGKKASGSGELRL 67
Query: 501 RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT------LSKNRTTLVIAHRLST 554
R+++A A P ++I DE TS LD E + S+ T+++
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 555 ITDADNII 562
+
Sbjct: 128 DLGPALLR 135
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 53.2 bits (128), Expect = 2e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRL 552
SGG +QRV IA A+L P ++I DE T++LD+ + I T L L + N ++I H L
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
Query: 553 STITD-ADNIIVFDQGTVVESGSHENLISQ 581
+ D ++V G +E G+ ++ Q
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNARDVFYQ 252
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 53.2 bits (128), Expect = 2e-07
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 357 IVFNNVSFSYNHHNCI----FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
I N+ +N +S EI + A+IG++G GK+T + L L G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 413 IITIDGQDIKKITK------------------------ESLRQTIGIIPQ--DTILFNDT 446
I +D K K + +R+ +G++ Q + LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 447 LRYNILYG--NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
+ +I++G + S +E A + A ++ L Y + +LSGG+K+RV++
Sbjct: 123 IEKDIIFGPVSMGVSKEE---AKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVAL 176
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA-HRLSTITDADN-II 562
A + P ++FDE T+ LD + I L+K T+++ H L + + I
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 563 VFDQGTVVESG 573
F G +++ G
Sbjct: 237 FFKDGKIIKDG 247
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 52.3 bits (125), Expect = 3e-07
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ--DIKKITKESL 429
+ KG++ + + S T L+G +G GKST+ L L + G + G+ D K +L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 430 RQTIGIIPQD---TILFNDTLRYNILYG--NPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
RQ + + QD I + D + +I + N + E+ V+ A
Sbjct: 76 RQQVATVFQDPEQQIFYTD-IDSDIAFSLRNLGVPEAEITRRVDEAL------------- 121
Query: 485 TVVGERGLK------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
T+V + + LS G+K+RV+IA A++ ++ DE T+ LD + +
Sbjct: 122 TLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 539 LSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESG------SHENLISQGGIYTSMW 589
+ ++I +H + I + +D + V QG ++ G + + Q G+ T W
Sbjct: 182 IVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGL-TQPW 239
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 51.7 bits (124), Expect = 5e-07
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 37/188 (19%)
Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQTIGIIPQD------ 439
AL+GE+G GKST+ K L+ +Y G I G++I K +KE+L I ++ Q+
Sbjct: 28 ALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87
Query: 440 -TILFNDTL-RY---------NILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
+++ N L RY + +Y + A EL D
Sbjct: 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL------------------DIDIDPR 129
Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLV- 547
+ LS + Q + IA+A N I+I DE TSSL H+ T + L + +V
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189
Query: 548 IAHRLSTI 555
I+H++ I
Sbjct: 190 ISHKMEEI 197
Score = 40.5 bits (95), Expect = 0.001
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK---------- 423
+ +SF++ + + G G ++ + + L+ + + G IT+ G+ I
Sbjct: 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324
Query: 424 ---ITKESLRQTIGIIPQDTILFNDTL--------RYNILYGNPNASDQELCAAVEVAQL 472
+T+E R++ GI I FN + + +L + SD + +
Sbjct: 325 FALVTEE--RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWV-------I 375
Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
S +K P G+ T +G LSGG +Q+V I R +L P I++ DE T +D+ + I
Sbjct: 376 DSMRVKTP-GHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430
Query: 533 QTALATLSKNRTTLVIAH----RLSTITDADNIIVFDQGTV 569
+A L+K ++I L IT D I+V G V
Sbjct: 431 YQLIAELAKKDKGIIIISSEMPELLGIT--DRILVMSNGLV 469
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 51.5 bits (124), Expect = 6e-07
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 57/238 (23%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-----KITKESL 429
++ E+ + +LIG +G GK+TV L Y GG I + GQ I+ +I + +
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 430 RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQ---LKSFIM----KLPN 481
+T Q LF + T+ N+L VAQ LK+ + K P
Sbjct: 83 VRTF----QHVRLFREMTVIENLL----------------VAQHQQLKTGLFSGLLKTP- 121
Query: 482 GYDTVVGER-----------GLK---------LSGGEKQRVSIARAILKNPPIIIFDEAT 521
+ E GL L+ G+++R+ IAR ++ P I++ DE
Sbjct: 122 AFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPA 181
Query: 522 SSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576
+ L+ + + +A L N T L+I H + + +D I V +QGT + +G+ E
Sbjct: 182 AGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 50.0 bits (120), Expect = 2e-06
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 36/222 (16%)
Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ---DIKKITKESLRQTI 433
S + A +G +G GKS +A+ L G + + G+ IT+ S Q
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARAL------AGELPLLSGERQSQFSHITRLSFEQLQ 76
Query: 434 GIIPQ-----DTILFND-------TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
++ +T + + T I D C ++AQ F
Sbjct: 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---VKDPARCE--QLAQQ--F------ 123
Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
G ++ R LS GE ++ + +A++ P ++I DE LD+ + + + LA+L +
Sbjct: 124 GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183
Query: 542 NRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
+ TLV + +R I D V T+ E+G E ++ Q
Sbjct: 184 SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
Score = 38.1 bits (89), Expect = 0.008
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLV----- 547
LS G+++ I RA++K+P ++I DE LD + + ++ + L S+ T L+
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461
Query: 548 -------IAHRLSTITDAD 559
I HRL + D D
Sbjct: 462 AEDAPACITHRLEFVPDGD 480
Score = 32.7 bits (75), Expect = 0.27
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 356 HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL 403
IV NN SYN I +S+++ P + ++G +G GKST+ L+
Sbjct: 260 RIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 48.1 bits (115), Expect = 6e-06
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 20/101 (19%)
Query: 494 LSGGEKQRVSIARAILK---NPPIIIFDEATSSL---DIITERHIQTALATL-SKNRTTL 546
LSGGE QR+ +A+ + K + I DE T+ L DI + + L L + T +
Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDI---KKLLEVLQRLVDQGNTVV 885
Query: 547 VIAHRLSTITDADNIIVFD--------QGTVVESGSHENLI 579
VI H L I AD II D GT+V SG+ E +
Sbjct: 886 VIEHNLDVIKTADYII--DLGPEGGDGGGTIVASGTPEEVA 924
Score = 32.3 bits (74), Expect = 0.38
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 494 LSGGEKQRVSIARAI---LKNPPIIIFDEATSSL---DIITERHIQTALATLSKNRTTLV 547
LSGGE QR+ +A I L + + DE + L D ER I T T +V
Sbjct: 488 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRD--NERLINTLKRLRDLGNTVIV 544
Query: 548 IAHRLSTITDADNII-------VFDQGTVVESGSHENL 578
+ H TI AD +I + G VV SG+ E +
Sbjct: 545 VEHDEETIRAADYVIDIGPGAGIHG-GEVVASGTPEEI 581
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 47.9 bits (114), Expect = 8e-06
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 28/212 (13%)
Query: 362 VSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI 421
++FS N +F + F + + + G++G GK+T+ ++L L ++ G I IDG+
Sbjct: 17 LAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75
Query: 422 KKITKESLRQTIGIIP---QDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
+ + +G +P D + L+G A ++ I+
Sbjct: 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---------RRAKQMPGSALAIVG 126
Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI--------ITER 530
L DT+V + LS G+K+R+++AR L P+ + DE ++LD+ +
Sbjct: 127 LAGYEDTLVRQ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
Query: 531 HIQT---ALATLSKNRTTLVIAHRLSTITDAD 559
H++ AL T + R+ T+ A
Sbjct: 183 HLRGGGAALVTTHGAYAAPPVRTRMLTLEAAA 214
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 47.6 bits (114), Expect = 8e-06
Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 51/224 (22%)
Query: 321 SRQS-FIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFE 379
SRQ+ FI E+ +K +NA+ N++ +++ +FK ++
Sbjct: 301 SRQNPFIRFEQ------DKKLHRNAL------------EVENLTKGFDNGP-LFKNLNLL 341
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQD 439
+ ++ A+IGE+GVGK+T+ + L + G + K S IG QD
Sbjct: 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-----------KWSENANIGYYAQD 390
Query: 440 -TILFNDTLRYNIL-----YGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK 493
F + L + + +Q ++ + +L D + ++ +K
Sbjct: 391 HAYDFENDL--TLFDWMSQWRQEGDDEQ---------AVRGTLGRLLFSQDDI--KKSVK 437
Query: 494 -LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
LSGGEK R+ + +++ P +++ DE T+ +D+ + + AL
Sbjct: 438 VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMAL 481
Score = 41.8 bits (99), Expect = 5e-04
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 42/207 (20%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITID-GQDIKKITKESLRQ 431
F+ IS + + LIG +G GKST K+L + G +++D + + K LRQ
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGK-----LRQ 71
Query: 432 ------TIGIIPQDTILFNDTLRYNI------LYGNPNASDQELCAAVEVAQLKSFIMKL 479
++ DT++ T + + +Y P S+++ ++VA L+ ++
Sbjct: 72 DQFAFEEFTVL--DTVIMGHTELWEVKQERDRIYALPEMSEED---GMKVADLEVKFAEM 126
Query: 480 PNGY--DTVVGE------------RGL--KLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
+GY + GE GL +++ G K RV +A+A+ NP I++ DE T++
Sbjct: 127 -DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185
Query: 524 LDIITERHIQTALATLSKNRTTLVIAH 550
LDI T R ++ L +N T ++I+H
Sbjct: 186 LDINTIRWLEDVLN--ERNSTMIIISH 210
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 45.2 bits (107), Expect = 4e-05
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 31/171 (18%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT---IDGQDIKKITKES 428
+ + ++ P TAL+G SG GK+T L D+ G T I+G DI+
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTT-------LMDVLAGRKTGGYIEG-DIRISGFPK 946
Query: 429 LRQTIGII-----------PQDTILFNDTLRYNILYGNP-NASDQELCAAV-EVAQLKSF 475
++T I PQ T+ ++L Y+ P S +E V EV +L
Sbjct: 947 KQETFARISGYCEQNDIHSPQVTV--RESLIYSAFLRLPKEVSKEEKMMFVDEVMEL--- 1001
Query: 476 IMKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
++L N D +VG G+ LS +++R++IA ++ NP II DE TS LD
Sbjct: 1002 -VELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Score = 37.1 bits (86), Expect = 0.012
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 484 DTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN 542
DT+VG+ ++ +SGG+K+RV+ I+ + DE ++ LD T I L +
Sbjct: 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385
Query: 543 RTTLVIAHRLS----TITDADNIIVFDQGTVVESGSHENLI 579
V+ L T D+II+ +G +V G ++++
Sbjct: 386 TEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 42.5 bits (100), Expect = 3e-04
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 46/210 (21%)
Query: 362 VSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLY-RLYDIKGGIITIDGQD 420
VS Y I I + P + L+G +G GKST+ KLL L + G I G
Sbjct: 318 VSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-- 374
Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA------QLKS 474
IK +G Q + F LR A + L +A +L+
Sbjct: 375 IK----------LGYFAQHQLEF---LR---------ADESPLQHLARLAPQELEQKLRD 412
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI-----ITE 529
++ D V E + SGGEK R+ +A + + P +++ DE T+ LD+ +TE
Sbjct: 413 YLGGFGFQGDKVTEETR-RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471
Query: 530 RHI--QTALATLSKNRTTLVIAHRLSTITD 557
I + AL +S +R H L + TD
Sbjct: 472 ALIDFEGALVVVSHDR------HLLRSTTD 495
Score = 30.5 bits (69), Expect = 1.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
I P +K L+G++G GKST+ LL GG T G
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG 62
Score = 28.6 bits (64), Expect = 4.4
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLD----IITERHIQTALATLSKNRTTLVIAH 550
SGG + R+++A+A++ +++ DE T+ LD I E+ +++ TL ++I+H
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTL------ILISH 204
Query: 551 R---LSTITDADNIIVFDQGTVVE 571
L I D II +Q ++ E
Sbjct: 205 DRDFLDPI--VDKIIHIEQQSLFE 226
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 42.2 bits (100), Expect = 4e-04
Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 373 FKGI---SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
FK + S + P + +IG +G GK+T+ ++ G + G D+ + + +
Sbjct: 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74
Query: 430 ------R--QTIGIIPQDTILFNDTLRYNI-------LYGNPNASDQELCAAVEVAQLKS 474
R Q + T+ N L L+ +A +++ + ++
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD-----RIEEVLE 129
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
I L + D + G LS G+KQ + I ++++P +++ DE + + E +T
Sbjct: 130 TIG-LADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT-DEETE-KT 182
Query: 535 A--LATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
A L +L+ + +V+ H + + AD + V QG+V+ GS
Sbjct: 183 AELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 42.1 bits (100), Expect = 4e-04
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 22/161 (13%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+F G+SF + + + G +G GK+++ ++L L G + G+ I++ ++ Q
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-RDEYHQ 74
Query: 432 TI-------GIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
+ GI + T L N LR+ P D+ L A+ L F +P
Sbjct: 75 DLLYLGHQPGIKTELTALEN--LRFYQRLHGP-GDDEALWEALAQVGLAGF-EDVPVRQ- 129
Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
LS G+++RV++AR L P+ I DE +++D
Sbjct: 130 ---------LSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 41.9 bits (99), Expect = 4e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
LSGGE+ R+ +AR LK ++I DE T+ LD+ T
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 338 KIEIQNAVNSKDLKIKNGHIVF--NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVG 395
K++++ A S G IVF NV++ + + K S ++ K ALIG +G G
Sbjct: 306 KMQVEEASRS-------GKIVFEMENVNYQIDGKQ-LVKDFSAQVQRGDKIALIGPNGCG 357
Query: 396 KSTVAKLL 403
K+T+ KL+
Sbjct: 358 KTTLLKLM 365
Score = 38.8 bits (91), Expect = 0.004
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLS 553
LSGG ++ ++ RA++ NP +++ DE T+ LDI T ++ L + + + I+H S
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL--KTFQGSIIFISHDRS 214
Query: 554 TITD-ADNIIVFDQGTVV 570
I + A I+ D+G +V
Sbjct: 215 FIRNMATRIVDLDRGKLV 232
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 40.2 bits (94), Expect = 0.002
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 468 EVAQLKSFIMKLPNGYDTVV---------GERGLKLSGGEKQRVSIARAIL---KNPPII 515
EVA+ F+ K+ ++ G+ LS EK + IA+ + K+P +
Sbjct: 1665 EVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLF 1724
Query: 516 IFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGT------ 568
+ DE +SLD + + L TL S + + I H + + AD +I G+
Sbjct: 1725 LLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGK 1784
Query: 569 VVESGSHENL 578
++ SG +++
Sbjct: 1785 ILFSGPPKDI 1794
Score = 37.9 bits (88), Expect = 0.009
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 494 LSGGEKQRVSIARAIL---KNPPIIIFDEATSSL---DIITERHIQTALATLSKNRTTLV 547
LSGGE QR+ +A +L K P + + DE T+ L DI + I + + T ++
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDI--KALIYVLQSLTHQGHTVVI 867
Query: 548 IAHRLSTITDADNIIVFDQ------GTVVESGSHENLIS 580
I H + + AD ++ G ++ S S E LI
Sbjct: 868 IEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle.
Length = 1179
Score = 39.3 bits (92), Expect = 0.003
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 494 LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDII-TERHIQTALATLSKNRTTLVI 548
LSGGEK ++A AI K P P I DE + LD ER L SKN +VI
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANL-LKEFSKNTQFIVI 1148
Query: 549 AHRLSTITDADNIIVFDQG-TVVESG 573
H T+ AD + G T+ E G
Sbjct: 1149 THNKGTMEVADQLY----GVTMQEKG 1170
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 35.6 bits (83), Expect = 0.034
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 379 EIAPSKKTALIGESGVGKST-VAKLLYRLYDIKG----GIITID 417
+ AL+G +GVGK+T +AKL R + G +IT+D
Sbjct: 217 ILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260
>gnl|CDD|183905 PRK13233, nifH, nitrogenase reductase; Reviewed.
Length = 275
Score = 34.0 bits (78), Expect = 0.12
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 383 SKKTALIGESGVGKS-----TVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIP 437
++K A+ G+ G+GKS T A + Y +D K + I G D K +S R +G P
Sbjct: 2 TRKIAIYGKGGIGKSTTTQNTAAAMAY-FHDKK---VFIHGCDPK---ADSTRLILGGKP 54
Query: 438 QDTILFNDTLR 448
Q T++ DTLR
Sbjct: 55 QTTMM--DTLR 63
>gnl|CDD|131926 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX.
Proteins in this family are now designated CbbX. Some
previously were CfxQ (carbon fixation Q). Its gene is
often found immmediately downstream of the Rubisco large
and small chain genes, and it is suggested to be
necessary for Rubisco expression. CbbX has been shown to
be necessary for photoautotrophic growth. This protein
belongs to the larger family of pfam00004, ATPase family
Associated with various cellular Activities. Within that
larger family, members of this family are most closely
related to the stage V sporulation protein K, or SpoVK,
in endospore-forming bacteria such as Bacillus subtilis.
Length = 284
Score = 33.7 bits (77), Expect = 0.13
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 25/104 (24%)
Query: 381 APSKKTALIGESGVGKSTVA----KLLYRL-YDIKGGIITID-----GQDIKKI---TKE 427
AP+ + G G GK+TVA ++L+RL Y KG ++++ GQ I TKE
Sbjct: 56 APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKE 115
Query: 428 SLRQTIGIIPQDTILFNDTLRYNILYGNPNASD--QELCAAVEV 469
L++ +G +LF D Y LY N D QE A+E+
Sbjct: 116 ILKRAMG-----GVLFIDEAYY--LYRPDNERDYGQE---AIEI 149
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 33.5 bits (78), Expect = 0.14
Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 494 LSGGEKQRVSIARAILKNP---PIIIFDEATSSL---DIITERHIQTALATL-SKNRTTL 546
LSGGE QRV +A+ + K + I DE T+ L DI R + L L K T +
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDI---RKLLEVLHRLVDKGNTVV 887
Query: 547 VIAHRLSTITDADNIIVFD--------QGTVVESGSHENLISQGGIYT 586
VI H L I AD II D G +V +G+ E + YT
Sbjct: 888 VIEHNLDVIKTADWII--DLGPEGGDGGGEIVATGTPEEVAKVEASYT 933
Score = 28.9 bits (66), Expect = 3.5
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 26/101 (25%)
Query: 337 EKIEI---QNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESG 393
+KIE+ + N K LK+K NN+ K + EI K T + G SG
Sbjct: 599 KKIEVPKERRKGNGKFLKLKGARE--NNL-----------KNVDVEIPLGKFTCVTGVSG 645
Query: 394 VGKST---------VAKLLYRLYDIKGGIITIDGQD-IKKI 424
GKST +A+ L + G I+G + + K+
Sbjct: 646 SGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 33.7 bits (77), Expect = 0.15
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGI 435
ISFE+ + +IG +G GKST++ L+ + G + I G + + + G+
Sbjct: 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------SAALIAISSGL 96
Query: 436 IPQDTILFNDTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGLKL 494
Q T + N L+ ++ G +E+ + E A + FI + Y
Sbjct: 97 NGQLTGIENIELK-GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY----------- 144
Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLD-IITERHIQTALATLSKNRTTLVIAHRLS 553
S G K R+ A ++ NP I++ DEA S D T++ + + +T I+H LS
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
Query: 554 TI 555
+
Sbjct: 205 QV 206
>gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response
regulator. Members of this protein family share
full-length homology with (but do not include) the
acetoacetate metabolism regulatory protein AtoC. These
proteins have a Fis family DNA binding sequence
(pfam02954), a response regulator receiver domain
(pfam00072), and sigma-54 interaction domain
(pfam00158).
Length = 445
Score = 33.2 bits (76), Expect = 0.18
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLYD 408
IAPS T L+ GESG GK +A+ L++L D
Sbjct: 158 IAPSDITVLLLGESGTGKEVLARALHQLSD 187
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent.
Length = 1164
Score = 33.1 bits (76), Expect = 0.23
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 480 PNGYDTVVGERGLKLSGGEKQRVSI----ARAILKNPPIIIFDEATSSLDIITERHIQTA 535
P G R +SGGEK ++ A K P FDE LD + +
Sbjct: 1064 PKGKPVQ---RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKL 1120
Query: 536 LATLSKNRTTLVIAHRLSTITDADNII 562
+ + +V++ R I AD I
Sbjct: 1121 IREKAGEAQFIVVSLRSPMIEYADRAI 1147
>gnl|CDD|106194 PRK13232, nifH, nitrogenase reductase; Reviewed.
Length = 273
Score = 33.0 bits (75), Expect = 0.24
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
++ A+ G+ G+GKST + L G I + G D K +S R +G + Q T+L
Sbjct: 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPK---ADSTRMLLGGLNQKTVL- 57
Query: 444 NDTLR 448
DTLR
Sbjct: 58 -DTLR 61
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 32.6 bits (75), Expect = 0.28
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 382 PSKKTALIGESGVGKSTVA 400
K AL+G SGVGKST+
Sbjct: 194 GGKTVALLGSSGVGKSTLV 212
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 32.3 bits (74), Expect = 0.35
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 387 ALIGESGVGKST-VAKL--LYRLYDIKG--GIITID 417
AL+G +GVGK+T +AKL + L +IT D
Sbjct: 198 ALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 32.4 bits (74), Expect = 0.38
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 385 KTALIGESGVGKSTVAKLLYRLYDI 409
K A+IG SG GKST+A+ L + Y+
Sbjct: 2 KIAIIGYSGSGKSTLARKLSQHYNC 26
>gnl|CDD|163217 TIGR03334, IOR_beta, indolepyruvate ferredoxin oxidoreductase, beta
subunit. This model represents the beta subunit of
indolepyruvate ferredoxin oxidoreductase, an
alpha(2)/beta(2) tetramer, as found in Pyrococcus
furiosus and Methanobacterium thermoautotrophicum.
Cofactors for the tetramer include TPP, 4Fe4S, and
3Fe-4S. It shows considerable sequence similarity to
subunits of several other ketoacid oxidoreductases.
Length = 189
Score = 31.7 bits (72), Expect = 0.52
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 288 YIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNS 347
Y+ + G V +NT P+ + ++ + ++E+L+ L E+ A N+
Sbjct: 79 YLPYLSEGGEVILNT---SPIPPVTVTRGLHP-----YPPLDEILSTLEERAGSVRAFNA 130
Query: 348 KDLKIKNGHIVFNNV 362
+++ ++ G+I+ NV
Sbjct: 131 EEIALEAGNILTLNV 145
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.4 bits (71), Expect = 0.62
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 494 LSGGEKQ------RVSIARAILKNPPIIIFDEATSSLD 525
LSGGEK RV++A+ + + ++I DE T+ LD
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|150482 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 31.0 bits (71), Expect = 0.91
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
FI LP G DT SG Q +I A+ +++ DE TS
Sbjct: 304 FINNLPPGKDTTDFSTEDA-SGSTSQAANIQEALEAGASLLLIDEDTS 350
>gnl|CDD|185322 PRK15424, PRK15424, propionate catabolism operon regulatory protein
PrpR; Provisional.
Length = 538
Score = 30.8 bits (70), Expect = 1.00
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 381 APSKKTALI-GESGVGKSTVAKLLYRLYDIKGG 412
A S LI GE+G GK A+ ++R Y +
Sbjct: 239 ARSSAAVLIQGETGTGKELAAQAIHREYFARHD 271
>gnl|CDD|129943 TIGR00864, PCC, polycystin cation channel protein. Note: this model
has been restricted to the amino half because for
technical reasons.
Length = 2740
Score = 30.4 bits (68), Expect = 1.2
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 103 EIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVV 156
++G G + + V H Y + +N +G +A +G R I + + + V
Sbjct: 1207 DMGDGKSLSGPEATVEHKYAKAGNCTVN--IGAA-NAAGHGARIIHVEVFVFEV 1257
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 30.5 bits (69), Expect = 1.3
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 17/61 (27%)
Query: 387 ALIGESGVGKSTVAKLL-----------------YRLYDIKGGIITIDGQDIKKITKESL 429
A+ G GVGK+TV+KLL + + K + ID + +E
Sbjct: 4 AITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEF 63
Query: 430 R 430
+
Sbjct: 64 K 64
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 30.5 bits (70), Expect = 1.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 388 LIGESGVGKSTVAKLL 403
LIG G GKST+ +LL
Sbjct: 9 LIGFMGAGKSTIGRLL 24
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 30.2 bits (68), Expect = 1.4
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
+ + F+ N I+F PS T + G +G GKS++ +++ + G I
Sbjct: 4 LHQLQFNIEQKNLFDLSITF--LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61
Query: 419 QDIKKITKESLR---QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
+I I K +G+ + T+ F + ++ +Y S + L AA+ +L
Sbjct: 62 CNINNIAKPYCTYIGHNLGLKLEMTV-FENLKFWSEIYN----SAETLYAAIHYFKLHDL 116
Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
+ E+ LS G ++ V+IAR I + + DE ++L
Sbjct: 117 L-----------DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
>gnl|CDD|179267 PRK01265, PRK01265, heat shock protein HtpX; Provisional.
Length = 324
Score = 30.1 bits (68), Expect = 1.6
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 146 SIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY-VSIMAVTVILYVWFTIITSNWRVG 204
I++ + + + L +L FA++ A +Y++G + V ++ +I + II W G
Sbjct: 5 VIKLRLNMALAGLGIVLLGFALAYAVAYYAFGAQFGVGLILGILIFVFFLNII--QWLFG 62
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed.
Length = 663
Score = 30.0 bits (67), Expect = 1.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
GH + ++ ++++ C+ +GIS E+ +L G +GK L YD G I
Sbjct: 141 GHDIVDHYTYAFMGDGCMMEGISHEVC-----SLAGTLKLGK------LIAFYDDNG--I 187
Query: 415 TIDGQ 419
+IDG
Sbjct: 188 SIDGH 192
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 139
Score = 30.0 bits (68), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 388 LIGESGVGKSTVAKLLYRLYD 408
L+G G GKS +A+ L
Sbjct: 4 LVGPPGTGKSELAERLAAALS 24
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 30.0 bits (68), Expect = 1.8
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
+ GH +F+N + C+ +G+S E +L G G+ K V LYD
Sbjct: 141 RPGHPIFDNYVYVICGDGCLQEGVSQEAL-----SLAGHLGLEKLIV------LYDDNK- 188
Query: 413 IITIDG 418
ITIDG
Sbjct: 189 -ITIDG 193
>gnl|CDD|162286 TIGR01287, nifH, nitrogenase iron protein. This model describes
nitrogenase (EC 1.18.6.1) iron protein, also called
nitrogenase reductase or nitrogenase component II. This
model includes molybdenum-iron nitrogenase reductase
(nifH), vanadium-iron nitrogenase reductase (vnfH), and
iron-iron nitrogenase reductase (anfH). The model
excludes the homologous protein from the
light-independent protochlorophyllide reductase.
Length = 275
Score = 29.7 bits (67), Expect = 2.0
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
++ A+ G+ G+GKST + + G + I G D K +S R +G Q T+L
Sbjct: 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK---ADSTRLLLGGKAQPTVL- 56
Query: 444 NDTLR 448
D LR
Sbjct: 57 -DVLR 60
>gnl|CDD|179916 PRK05022, PRK05022, anaerobic nitric oxide reductase transcription
regulator; Provisional.
Length = 509
Score = 29.8 bits (68), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 379 EI---APSKKTALI-GESGVGKSTVAKLLYRL 406
EI A S LI GE+GVGK VA+ ++
Sbjct: 202 EIEVVAASDLNVLILGETGVGKELVARAIHAA 233
>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR;
Provisional.
Length = 441
Score = 29.6 bits (66), Expect = 2.1
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 380 IAPSKKTALI-GESGVGKSTVAKLLY 404
+APS+ T LI G+SG GK VA+ ++
Sbjct: 158 VAPSEATVLIHGDSGTGKELVARAIH 183
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 29.6 bits (67), Expect = 2.3
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 388 LIGESGVGKSTVAKLLY-RLYDIKGGIITI-DGQDIKK 423
G SG GKST+AK L +L +++G +T+ DG ++K
Sbjct: 397 FTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 29.6 bits (67), Expect = 2.6
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 387 ALIGESGVGK-STVAKLLYR 405
AL+G +GVGK +T AKL R
Sbjct: 260 ALMGPTGVGKTTTTAKLAAR 279
>gnl|CDD|128472 smart00175, RAB, Rab subfamily of small GTPases. Rab GTPases are
implicated in vesicle trafficking.
Length = 164
Score = 29.0 bits (66), Expect = 3.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 17/49 (34%)
Query: 388 LIGESGVGKSTVAKLLYRL--------YDIKGGI------ITIDGQDIK 422
LIG+SGVGKS+ LL R Y G+ I +DG+ +K
Sbjct: 5 LIGDSGVGKSS---LLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVK 50
>gnl|CDD|178730 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 29.1 bits (65), Expect = 3.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 300 INTLLTQLAIPLNILGTI----------YRDSRQSFIEIEEL 331
IN L+QL +NIL I YRDSR +F+ E L
Sbjct: 358 INRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESL 399
>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 436
Score = 28.9 bits (64), Expect = 3.7
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 387 ALIGESGVGK-STVAKLLYRLYDIKG--GIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
ALIG +GVGK +T+AK+ ++ + K G IT D I T + L+ + I + I
Sbjct: 245 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG--TVQQLQDYVKTIGFEVIAV 302
Query: 444 ND 445
D
Sbjct: 303 RD 304
>gnl|CDD|181074 PRK07668, PRK07668, hypothetical protein; Validated.
Length = 254
Score = 28.8 bits (65), Expect = 3.8
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 37 SVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVNLISN 94
++ +I+ I FL KW +++ + SY+ G++ LIT + +
Sbjct: 148 VILIPMLLIVAIMFLNKWYGTPMLQFTQ---MQSYILAGLIFLITVIINIYFLGWFGL 202
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 28.9 bits (66), Expect = 3.8
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 390 GESGVGKSTVAKLL-----YRLYDIKGGIITIDG-QDIKKITKE-SLRQTIGIIPQDTIL 442
G G GK+T+A+++ + G +D++++ +E R++ G + TIL
Sbjct: 43 GPPGTGKTTLARIIAGATDAPFEALSA---VTSGVKDLREVIEEARQRRSAG---RRTIL 96
Query: 443 FND 445
F D
Sbjct: 97 FID 99
>gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 28.9 bits (65), Expect = 4.3
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 388 LIGESGVGKSTVAKLLY-RLYDIKGGIITIDGQDIKKI 424
+ G +G GK+T+AK LY RL +I +DG ++++I
Sbjct: 12 ITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49
>gnl|CDD|179421 PRK02406, PRK02406, DNA polymerase IV; Validated.
Length = 343
Score = 28.5 bits (65), Expect = 4.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 393 GVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIG 434
GVGK T KL L GI T D++K L + G
Sbjct: 175 GVGKVTAEKLH-AL-----GIYT--CADLQKYDLAELIRHFG 208
>gnl|CDD|177917 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 28.5 bits (64), Expect = 4.9
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 450 NILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAIL 509
N++ G+ L A+ +V ++ +F G T VG++ + + +RVS+
Sbjct: 221 NVVMGDAPEIGDALLASPKVRKI-TF-----TG-STAVGKKLMAGAAATVKRVSLELG-- 271
Query: 510 KNPPIIIFDEATSSLDIITERHIQTALATLSKNRT---TLVIAHRL 552
N P I+FD+A D+ + ++ ALA SK R T V A+R+
Sbjct: 272 GNAPFIVFDDA----DL--DVAVKGALA--SKFRNSGQTCVCANRI 309
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 28.6 bits (65), Expect = 4.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 384 KKTALIGESGVGKST 398
K T L G+SGVGKST
Sbjct: 165 KVTVLAGQSGVGKST 179
>gnl|CDD|162808 TIGR02329, propionate_PrpR, propionate catabolism operon regulatory
protein PrpR. At least five distinct pathways exists
for the catabolism of propionate by way of
propionyl-CoA. Members of this family represent the
transcriptional regulatory protein PrpR, whose gene is
found in most cases divergently transcribed from an
operon for the methylcitric acid cycle of propionate
catabolism. 2-methylcitric acid, a catabolite by this
pathway, is a coactivator of PrpR.
Length = 526
Score = 28.3 bits (63), Expect = 5.2
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 381 APSKKTALI-GESGVGKSTVAKLLYRL 406
A S T LI GESG GK VA+ +++L
Sbjct: 232 ARSDATVLILGESGTGKELVAQAIHQL 258
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 28.6 bits (65), Expect = 5.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 17/55 (30%)
Query: 390 GESGVGKSTVAKLL--------------YR---LYDIKGGIITIDGQDIKKITKE 427
G +G GK TVAK+L YR L ++ G+ D + + +
Sbjct: 11 GPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAH 65
>gnl|CDD|150946 pfam10354, DUF2431, Domain of unknown function (DUF2431). This is
the N-terminal domain of a family of proteins found from
plants to humans. The function is not known.
Length = 166
Score = 28.3 bits (64), Expect = 5.7
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 289 IGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEI----EELLNIL-NEKIEIQN 343
+GE GDF F +L T P N+ T DSR+ E EE L L + + +
Sbjct: 3 VGE---GDFSFSLSLATAFGSPTNLTATSL-DSREELEEKYGDAEENLEELEELGVTVLH 58
Query: 344 AVNSKDLK----IKNGH---IVFN 360
V++ LK +K I+FN
Sbjct: 59 GVDATKLKKHFSLKKNRFDRIIFN 82
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 28.0 bits (63), Expect = 6.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIK 410
KK LIG G GKST+A+ L +I
Sbjct: 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28
>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. A
close homolog, scoring just below the trusted cutoff, is
found (with introns) in Arabidopsis thaliana. Its role
is unknown.
Length = 464
Score = 28.1 bits (63), Expect = 6.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 382 PSKKTALIGESGV-GKSTVAKLLYRLYDIKG 411
PSKK +IG +G GK+T L+ +L + G
Sbjct: 81 PSKKLKVIGVTGTNGKTTTTSLIAQLLRLLG 111
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 28.1 bits (64), Expect = 7.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 392 SGVGKSTVAKLL 403
SG GKST+ K L
Sbjct: 14 SGAGKSTLVKAL 25
>gnl|CDD|183907 PRK13235, nifH, nitrogenase reductase; Reviewed.
Length = 274
Score = 27.9 bits (62), Expect = 7.3
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
+K A+ G+ G+GKST + G + + G D K +S R +G + Q T+L
Sbjct: 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK---ADSTRLLLGGLAQKTVL- 57
Query: 444 NDTLR 448
DTLR
Sbjct: 58 -DTLR 61
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University).
Length = 1311
Score = 28.1 bits (62), Expect = 7.4
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 484 DTVVGERGLKLSGGEKQ------RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
DT + RG + S G+K R+++A N II DE T++LD + AL
Sbjct: 1191 DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALV 1249
Query: 538 TLSKNRTT------LVIAH 550
+ K+R+ LVI H
Sbjct: 1250 EIIKSRSQQRNFQLLVITH 1268
>gnl|CDD|131169 TIGR02114, coaB_strep, phosphopantothenate--cysteine ligase,
streptococcal. In most bacteria, a single bifunctional
protein catalyses phosphopantothenoylcysteine
decarboxylase and phosphopantothenate--cysteine ligase
activities, sequential steps in coenzyme A biosynthesis
(see TIGR00521). These activities reside in separate
proteins encoded by tandem genes in some bacterial
lineages. This model describes proteins from the genera
Streptococcus and Enterococcus homologous to the
C-terminal region of TIGR00521, corresponding to
phosphopantothenate--cysteine ligase activity.
Length = 227
Score = 27.9 bits (62), Expect = 7.7
Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 524 LDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGG 583
+++ E ++ A A+L KN+ ++A+ L+ I+ + + + V++ + I++
Sbjct: 160 VNVTQEELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQVQTAQTKEEIAE-L 218
Query: 584 IYTSMWKK 591
+Y + K
Sbjct: 219 LYEKVQKY 226
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 27.9 bits (62), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 220 VFDTLINFETIQYFNSEKFEINRLEKYISKYKE 252
D L E I+ NS++ I ++ I+K K+
Sbjct: 1402 KIDFLNKHEAIEPSNSKEVNIIKITDNINKCKQ 1434
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important residue
(active site in E.coli) is residue 100 of the seed
alignment.
Length = 184
Score = 27.8 bits (62), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422
L G SG GKST+A L + L + +DG +++
Sbjct: 23 LTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58
>gnl|CDD|132636 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli.
Length = 360
Score = 28.0 bits (63), Expect = 8.3
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGII--------TIDGQDIKKITKESLRQTIGI 435
K ++G + VGKS++ L + + +I T+D +I SL T GI
Sbjct: 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214
Query: 436 IPQDTILF 443
I +
Sbjct: 215 INSHQMAH 222
>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. There are two conserved sequence
motifs: GKT and YLP.
Length = 1192
Score = 27.7 bits (62), Expect = 8.6
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL 403
+ G+ E+ T + G + GK+T+ +L+
Sbjct: 3 IDSHLPGVVNELDLDGHTNICGTNAAGKTTLQRLI 37
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,410,851
Number of extensions: 616549
Number of successful extensions: 2238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1987
Number of HSP's successfully gapped: 378
Length of query: 597
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 498
Effective length of database: 3,855,281
Effective search space: 1919929938
Effective search space used: 1919929938
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.1 bits)