BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780576|ref|YP_003064989.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
         (597 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/597 (100%), Positives = 597/597 (100%)

Query: 1   MAFARFPSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLI 60
           MAFARFPSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLI
Sbjct: 1   MAFARFPSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLI 60

Query: 61  EQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHV 120
           EQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHV
Sbjct: 61  EQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHV 120

Query: 121 YKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY 180
           YKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY
Sbjct: 121 YKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY 180

Query: 181 VSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEI 240
           VSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEI
Sbjct: 181 VSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEI 240

Query: 241 NRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFI 300
           NRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFI
Sbjct: 241 NRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFI 300

Query: 301 NTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFN 360
           NTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFN
Sbjct: 301 NTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFN 360

Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
           NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD
Sbjct: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420

Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
           IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP
Sbjct: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480

Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
           NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS
Sbjct: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540

Query: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCESIK 597
           KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCESIK
Sbjct: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCESIK 597


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score =  235 bits (600), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 171/264 (64%), Gaps = 2/264 (0%)

Query: 331 LLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIG 390
           + ++L+  I I+ + ++ +L +  G  VF +V FSY   + +  GI+      K TAL+G
Sbjct: 327 MFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVG 386

Query: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450
            SG GKST+  LL R+YD   G I IDG +I+ IT  SLR+ I  + QD  LF++T+RYN
Sbjct: 387 PSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYN 446

Query: 451 ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILK 510
           IL G P A+++E+    + A    FIM LP GYDT VGE G  LSGG+KQR++IARA+L+
Sbjct: 447 ILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR 506

Query: 511 NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVV 570
           +  I++ DEATS+LD  TE  ++ AL+ L + RTT+VIAHR+STI +AD+II  + G V 
Sbjct: 507 DGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVS 566

Query: 571 ESGSHENLISQ--GGIYTSMWKKQ 592
           ESG  + L+ Q  G +Y  M+  Q
Sbjct: 567 ESGDQKYLLQQKDGSLYKKMYASQ 590


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score =  195 bits (496), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/508 (28%), Positives = 248/508 (48%), Gaps = 37/508 (7%)

Query: 97  RDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRI-IV 155
           R +    +G+     +   V++ + KLS  F  +   G++ S +      I+ II I + 
Sbjct: 31  RYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMS 90

Query: 156 VHLIPTILEF-AISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLH 214
           + L   ++ F A+ M F+      I +S++ V+++      +I        S+K  N L+
Sbjct: 91  IVLRSLLMGFGAMCMMFVI----SIKLSLIVVSIVTLFLMVMIK------FSRKKTNTLY 140

Query: 215 ECHAKVF----DTLINFETIQYFNSEK-----FEINRLEKYISKYKESAISVATSLGWLN 265
               K+     D + +   +Q FN+ K     ++I   + Y    + + I    +   + 
Sbjct: 141 ADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIF 200

Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDF----VFINTLLTQLAIPLNILGTIYRDS 321
           F      S G+ I  +I +H V   E   G      V+       +   L  +G I    
Sbjct: 201 F-----VSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGI---- 251

Query: 322 RQSFIEIEELLNILNEKIEIQNAVNSKDLKIKN-GHIVFNNVSFSY--NHHNCIFKGISF 378
            Q+   +  L  ++  K++I + ++S+       G + F +VSF Y       I K ++F
Sbjct: 252 SQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNF 311

Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
            + P +  AL+G+SG GK+++  L+ R YD   G + I+G D++ ++ E +R+ I  +PQ
Sbjct: 312 TVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQ 371

Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
             I+   ++  NI  G P+A+ +E+  A  +AQ   FI  L NGYDT++G+  + LS G+
Sbjct: 372 HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQ 431

Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA 558
            QR++IARAILK+ PI++ DE  S+LDI  E+ I   L    + RTT+  +HRLS I DA
Sbjct: 432 IQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDA 491

Query: 559 DNIIVFDQGTVVESGSHENLISQGGIYT 586
           D + V     +VE G HE L+ + G Y 
Sbjct: 492 DMVFVLHDQVIVEKGVHEELLKKSGFYA 519


>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 254

 Score = 80.5 bits (197), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 24/240 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-----IKG 411
           ++ N VS  Y     +F  I+ +I  +  TALIG SG GKST  + L R+ +     +  
Sbjct: 7   MISNKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65

Query: 412 GIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILYG--------NPNASDQ 461
           G I +DG++I + + +   LR  +G++ Q    F  ++  N+ YG        N    DQ
Sbjct: 66  GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125

Query: 462 ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
            +  +++ A L + +       D +  +  L LSGG++QRV IARA+  NP +I+ DE  
Sbjct: 126 IVEMSLKKASLFNEV------KDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPC 178

Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
           S+LD I    ++  +  L ++ T +++ H +      +    +F  G +VE    + + +
Sbjct: 179 SALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGII 436
            F++  +++  ++G SG GKST+  L+        G I ++GQ+  + +    ++ + I+
Sbjct: 19  DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSIL 76

Query: 437 PQDTILFND-TLRYNILYG-NPNAS-DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK 493
            Q+  LF+  T+  NI  G  PN   D    A V+    K F+    N + +       +
Sbjct: 77  FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS-------Q 129

Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHR 551
           +SGG++QRV++AR +++  PI++ DE  +  D      I   L  +   R  T L+I+H 
Sbjct: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189

Query: 552 L-STITDADNIIVFDQGTVVESGSHENLIS 580
           L  ++  A   IV   G +V  G  + L++
Sbjct: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219


>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 280

 Score = 66.2 bits (160), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 28/244 (11%)

Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
           G +   ++S +Y +  C  + ++  I  +  TALIG +G GKST+ + +  L  +  G I
Sbjct: 10  GGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69

Query: 415 TIDGQDIKKITKESLRQTIGIIPQD-------TILFNDTL---RYNILYGNPNASDQE-- 462
           +I  Q ++   K  L   I  IPQ         IL  D +   RY  +     AS+ +  
Sbjct: 70  SIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126

Query: 463 -LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
            +  A+E   + S   +        +GE    LS G+++RV +ARA+ +   +II DE  
Sbjct: 127 IVTEALENVGMSSMRQRQ-------IGE----LSIGQQKRVFLARALAQKSQVIIMDEPF 175

Query: 522 SSLDIITERHIQTALAT-LSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
           +++D  TER +   L + L+++   LV  H +++I    +  +F + TV+ SG   ++ +
Sbjct: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFN 235

Query: 581 QGGI 584
           +  I
Sbjct: 236 EDNI 239


>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 565

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 145/361 (40%), Gaps = 47/361 (13%)

Query: 230 IQYFNSEKFEINRLEKYISKYKESAISVATSL------------GWLNFGQGLIFSIGMV 277
           + Y+N ++      +  I+K     ISV  +L             WL   Q L  S G +
Sbjct: 211 LTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKL--SAGAI 268

Query: 278 I-TMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILN 336
           I T II++ A+   EQ +     +N  L  L   +N                      LN
Sbjct: 269 IATSIITARAMAPLEQIINSKKSLNVGLKSLKYLIN----------------------LN 306

Query: 337 EKIEIQNAVNSK----DLKIKNGHIVFNNVSF-SYNHHNCIFKGISFEIAPSKKTALIGE 391
           +   + N+ +SK     +++ N  I   N+ F        I + +SF I       + G 
Sbjct: 307 DFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366

Query: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451
           SG GKS     +  L  ++ G I+   + I +   E     IG + Q   LF  ++  NI
Sbjct: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426

Query: 452 LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN 511
           +  +   S        ++      I+ L NGY T      +  +  +K R+S  R I  N
Sbjct: 427 ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANN 484

Query: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLV-IAHRLSTITDADNIIVFD--QGT 568
           P I++ DE    LD   + +  T L    +N+ T+V I+H  + I+ +D  ++F   QG+
Sbjct: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGS 544

Query: 569 V 569
           +
Sbjct: 545 L 545


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 34/246 (13%)

Query: 336 NEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVG 395
           N  +EIQ+   S  LK  +G+++             +   ++F ++  +   L+G SG G
Sbjct: 9   NRLLEIQDICQSFSLKKISGNLL-------------VLDKVNFNVSSGEIVGLLGRSGSG 55

Query: 396 KSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILY 453
           KST+ +++  L     G +   G+ IK   K+   + QT  + P  T+L N  L      
Sbjct: 56  KSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG 115

Query: 454 GNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513
            +     +   +A+++  L        +G+++       ++SGG  QRV  ARA +  P 
Sbjct: 116 IDKEERRKRALSAIDLIGL--------DGFESA---HTTEISGGMLQRVGFARAFVVFPS 164

Query: 514 IIIFDEATSSLDIITERHIQTALATL-SKNR----TTLVIAHRL-STITDADNIIVF--D 565
           +++ DE  S+LD++T  +++T L  L  + R    + L++ H +   +   D ++VF  +
Sbjct: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224

Query: 566 QGTVVE 571
            G + E
Sbjct: 225 PGRIAE 230


>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 262

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 33/219 (15%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK-ESLR 430
           + KG+   + P +   L+G +G GK+T   ++  L     G I IDG DI K+      R
Sbjct: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99

Query: 431 QTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
             I  +PQ+  +F   T+  NIL            A +EV +      K     D+++ E
Sbjct: 100 LGISYLPQEASIFRGLTVEENIL------------AVLEVYEKDK--KKRHEKLDSLLKE 145

Query: 490 RGLK---------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
             +          LSGG+++R+ IAR+++  P  I+ DE  + +D +    I   +  L+
Sbjct: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205

Query: 541 KNRTTLVIA----HRLSTITDADNII----VFDQGTVVE 571
                ++I     H + T+ D   II    V   GTV E
Sbjct: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 17/218 (7%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKGGIITIDGQDIKKITKESL 429
           I +G++ ++ PS+  A++G +G GKST++ LL  ++ Y+I  G I   G+ I   +    
Sbjct: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE- 76

Query: 430 RQTIGI---------IPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
           R + GI         IP   I+    L+  +       +++EL       +++    +L 
Sbjct: 77  RASKGIFLAFQYPVEIP--GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134

Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER-HIQTALATL 539
              D +     L  SGGEK+   I +  L  P + I DE  S LDI   +   Q   A  
Sbjct: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194

Query: 540 SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGSH 575
           S++R+ L+I H  RL      D I V   G ++++G +
Sbjct: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 39/228 (17%)

Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG----QDIKKITKES 428
            + I+  +   ++  + G SG GKST+ + +  +   + G I I+G     DI+ I    
Sbjct: 33  LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--HE 90

Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
           +R+ +G++ Q   LF+            N S  E C    +     ++ K+P      + 
Sbjct: 91  VRRDVGMVFQHFNLFS------------NLSVLENCTLGPI-----WVRKMPKKDAEELA 133

Query: 489 ERGL-KLSGGEK-------------QRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
              L K+   +K             QR +IAR++   P I++FDE TS+LD    + +  
Sbjct: 134 MHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193

Query: 535 ALATLSKNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
            +  L++   T+V + H +      AD ++  DQG +VE  S E   +
Sbjct: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 57.4 bits (137), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 48/224 (21%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I  +N SF  N +  I + I+F I P++   LIG +G GKST+AKL+  +  IK  I ++
Sbjct: 11  ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSV 67

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
                    K   +  +G +PQ   + N                      + ++ ++   
Sbjct: 68  ---------KRHPQLIVGYVPQKVTIEN---------------------TLPLSLMRFMT 97

Query: 477 MKLPNGYDTV---------VGE--RGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           + +P+  D V         +G+  R +K LSGGE QR  +A+A+L+ P +++ DE    +
Sbjct: 98  LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157

Query: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTI-TDADNIIVFD 565
           D   E  +   + ++ ++     L+I+H L  +    D +I  +
Sbjct: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 15/225 (6%)

Query: 357 IVFNNVSFSYNHHNCIF---KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           ++  NV  SY      F   + +   +   +  AL+  SG GKST+  +   L     G 
Sbjct: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66

Query: 414 ITIDGQDIKKITKES---LRQT-IGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVE 468
           + I  Q   K++ +    LR + IG + Q+  L  D ++  NI++    A      A   
Sbjct: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126

Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
              L S++             R   +SGGE+QRV+I RAI   P II+ DE T +LD+ T
Sbjct: 127 AMDLLSYM-----DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181

Query: 529 ERHIQTALATL--SKNRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
            + + + L  L        L+  H     +  D  I    G + +
Sbjct: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 50.8 bits (120), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHR 551
           LSGG KQRV  ARA     PI++ DE  SSLD +    +Q  L  L +   +T + ++H 
Sbjct: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229

Query: 552 LSTITDADN-IIVFDQGTVVESGSHENLI 579
           ++      N I + + G +++ G+ + +I
Sbjct: 230 INEAFRLGNRIAIMEGGRIIQCGTPQEII 258


>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 45.4 bits (106), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 14/203 (6%)

Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI---KKITKESLRQTIGIIPQDTILF 443
            +IG SG GKS + + +  L     G + + G+ +   K     +    +G++ Q   LF
Sbjct: 43  GVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALF 102

Query: 444 ND-TLRYNILYGNPNASDQELCAAV--EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQ 500
           +  T++ NI    P      L A +   +   K  I+ LP     ++     +LSGG  +
Sbjct: 103 SSMTVQENISM--PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIK 157

Query: 501 RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL--SKNRTTLVIAHRLST-ITD 557
           RVS+ARA+  +P ++  DE TS LD I        L  L  S   +  +I H L+  I+ 
Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIST 217

Query: 558 ADNIIVFDQGTVVESGSHENLIS 580
            + + V  +  +++ G+  +++ 
Sbjct: 218 CNRVAVIQKKGIMKEGTISDIVD 240


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 43.5 bits (101), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 355 GHIVFN--NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
           GH+V     +S SYN    +   +SF++ P     +IG +G GK+T+ ++L        G
Sbjct: 314 GHVVIEAKGISKSYNDR-LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372

Query: 413 IITIDGQDIK----KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVE 468
            I + G+ +       +++SL +    + +D    +D ++ N    N  A     C+A  
Sbjct: 373 TIHV-GETVCLSYVDQSRDSL-EAEKTVWEDISGGDDIVKLNGHEINSRA----YCSA-- 424

Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
                 F  K   G D    +R   LSGG++ RV +A+ +     +I+ DE T+ LD  T
Sbjct: 425 ------FNFK---GGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473

Query: 529 ERHIQTALATLSKNRTTLVIAH-RLSTITDADNIIVFDQGTVVE 571
              ++ AL   +     ++I+H R+     A +I+ F+    VE
Sbjct: 474 LSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVE 515



 Score = 30.8 bits (68), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 36/182 (19%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLY---RLYDIKG--------GIITIDGQ- 419
           +   I+    P  K  ++G +G GKST+ +++    + Y+ +         G +  + Q 
Sbjct: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80

Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI--- 476
           D+ K  KE++ +  G+  +  IL     RYN L  N +   +E     E+A+L+  I   
Sbjct: 81  DLSKTVKENIIE--GVAHKQAILD----RYNELMMNYSEKTEE-----EIAKLQDIIDSK 129

Query: 477 ----------MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
                     + + + +    G     LSGGEK+RV++ + +L +P +++ DE T+ LD 
Sbjct: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189

Query: 527 IT 528
            T
Sbjct: 190 ET 191


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 41.2 bits (95), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 18/180 (10%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           + K  S  I   +   ++G +G GK+T+ KLL        G IT+ G ++K  T +  R+
Sbjct: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ-LKSFIMKLPNGYDTVVGER 490
            I   P  ++        + L G+   S      +  VA  +K F+   P+   +++   
Sbjct: 358 DID--PDKSLA-------SYLTGSSGDSLMVRGESRHVAGYIKDFLFH-PDQAHSLMKH- 406

Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAH 550
              LSGGEK R  +AR + +    +I DE T+ LD  T   ++  +  L    T L+++H
Sbjct: 407 ---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461



 Score = 38.5 bits (88), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 52/245 (21%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           + + +   I P ++  L+G +G GKST+ K+   + + + G                   
Sbjct: 20  LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG------------------- 60

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNAS---------DQELCAAVEVAQLKSFIMKLPNG 482
                    +  + + R   L  NP+ S         D  +   +E       ++K    
Sbjct: 61  --------NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLK---K 109

Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT----ERH---IQTA 535
           ++    +R   LS G+ + V++ + ++  P I+I DE T+ LD  T    E+    I +A
Sbjct: 110 FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA 169

Query: 536 LATLSKNRTTLVIAHRLSTIT---DADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           L  +S +R  L     LST T   D   +   DQG        +N++ Q  I     KK+
Sbjct: 170 LIFVSHDRRFL---ETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKK 226

Query: 593 CESIK 597
            E+ K
Sbjct: 227 NEAEK 231


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 37.0 bits (84), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 487 VGERGLKLSGGEKQRVSIARAILKNP---PIIIFDEATSSLDIITERHIQTALATL-SKN 542
           +G+    LSGGE QRV +A+ + K      + I DE T+ L       +   L TL  + 
Sbjct: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898

Query: 543 RTTLVIAHRLSTITDADNIIVF------DQGTVVESGSHENLISQGGIYTSMWKK 591
            + +VI H L  I  AD I+ F        G ++ SG  E +  +   YT  + K
Sbjct: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLK 953


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 554

 Score = 29.3 bits (64), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 21/150 (14%)

Query: 430 RQTIGIIPQD----TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485
           RQ    + QD       F   L  N++   P    + +C  V +   K  I   P+G D 
Sbjct: 351 RQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDIS--PDGIDR 408

Query: 486 V----VGERG------LKL-SGGEKQRVSIARAIL----KNPPIIIFDEATSSLDIITER 530
           V       RG      +KL SGGE  R  +A  I+     + P ++FDE  S +      
Sbjct: 409 VEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVAD 468

Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADN 560
            I   L  LSK    L + H       AD 
Sbjct: 469 AIGYRLKQLSKKIQLLAVTHAPQVAARADR 498


>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 587

 Score = 28.5 bits (62), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 9   LRTLKKLW----PYMWPANRWDLKVRIIGAMFSVIASKFVILG-----IPFLLKWVTESL 59
           L   +K W    P+  P   W++ + + G  F V+AS+ +++G     +P +  ++  ++
Sbjct: 174 LSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAI 233

Query: 60  IEQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIR 97
            EQ   +   + LT+  VI +      R + + SN  R
Sbjct: 234 KEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFR 271


>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 27.7 bits (60), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 90  NLISNHIRDFLYVEIGQG-ATCTLYHQVVSHVYKLSQRFHINYKVGK 135
           NL++ H R  L   IG   ++    H +   ++K SQ F I++ +GK
Sbjct: 139 NLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGK 185


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 26.9 bits (58), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKESLRQTI 433
           G+     P      +G +GVGK+ + K L R L+D +  +I ID  +   + K S+ + I
Sbjct: 590 GLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY--MEKHSVSRLI 647

Query: 434 GIIP 437
           G  P
Sbjct: 648 GSPP 651


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score = 26.6 bits (57), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRL 406
           E+ P K   L+G +GVGK+ +++ L RL
Sbjct: 50  ELMP-KNILLVGPTGVGKTAISRRLARL 76


>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 186

 Score = 26.6 bits (57), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/14 (78%), Positives = 13/14 (92%)

Query: 388 LIGESGVGKSTVAK 401
           LIG SGVGK+T+AK
Sbjct: 7   LIGASGVGKTTIAK 20


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 25.8 bits (55), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 187 TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246
             +L  WF     N+R    K+++ +L + H K     I+ + +Q     ++E N+ EKY
Sbjct: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ----AEYEKNK-EKY 264

Query: 247 IS 248
            S
Sbjct: 265 FS 266


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 25.4 bits (54), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 92  ISNHIRDFLYVEIGQGATCTLYHQVVSHVY 121
           I NH ++  Y E  +G++   YH   +H+Y
Sbjct: 268 IKNHQKE--YDESEKGSSKARYHAAYAHIY 295


>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 25.0 bits (53), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 274 IGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLN 333
           IG  + +I  SH V  G+  +GDF  +         P+ +LG   +    +F+  E L+ 
Sbjct: 40  IGAGVELI--SHCVVAGKTKIGDFTKV--------FPMAVLGGDTQSKYHNFVGTELLVG 89

Query: 334 ILNEKIEIQNAV--NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGE 391
              +K  I+  V  N   ++     IV +N  F  N H          +A   K   +G 
Sbjct: 90  ---KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSH----------VAHDCK---LGN 133

Query: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451
             V  + V    + + D +  ++   G  + + T+      IG +   T + +D + Y I
Sbjct: 134 GIVLSNNVMIAGHVIVDDR--VVFGGGSAVHQFTRIGKYAFIGGM---TGVVHDVIPYGI 188

Query: 452 LYGNPNA 458
           L GNP A
Sbjct: 189 LNGNPGA 195


>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 185

 Score = 25.0 bits (53), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 13/14 (92%)

Query: 388 LIGESGVGKSTVAK 401
           LIG SGVG++T+AK
Sbjct: 7   LIGASGVGETTIAK 20


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 25.0 bits (53), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 388 LIGESGVGKSTVAKLLYRLYDI 409
           L+G +G GK+ +A+ L R+ D+
Sbjct: 118 LVGPTGCGKTYLAQTLARIIDV 139


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 25.0 bits (53), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 425 TKESLRQTIGIIPQDTILFNDTL 447
           TK SL   +G IP DT+ FN +L
Sbjct: 865 TKCSLLSYLGYIPFDTVKFNGSL 887


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score = 24.6 bits (52), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 382 PSKKTALIGESGVGKSTVAKL 402
           PS+   L+G SG GKS +A +
Sbjct: 63  PSRVVILVGPSGSGKSCLANI 83


>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
           peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 288

 Score = 24.6 bits (52), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTI 317
           F +   +++ +V   +ISSHA+      +G F F+   + + AI  +  G I
Sbjct: 168 FTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKI 219


>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 222

 Score = 23.9 bits (50), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 21/101 (20%)

Query: 9   LRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKT 68
           L+  KK W  +     WD+++R IG++ S   S+ V L            +IE  +  KT
Sbjct: 58  LQEAKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLF----------DVIETVSREKT 105

Query: 69  TSYLTIGIV---------ILITSYGTMRVVNLISNHIRDFL 100
            S L++ ++         I + +   ++   ++ N  +DF+
Sbjct: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146


>gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 400

 Score = 23.9 bits (50), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA--LATLSK 541
           D+++ + G K     KQ ++ AR ++ N P+ +F+     ++      ++ A  +A L+K
Sbjct: 291 DSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFE-----IEPFDRATVEVAHYVAKLTK 345

Query: 542 NRTTLVIAHRLSTIT 556
            R  + IA    TIT
Sbjct: 346 ERRIISIAGGGDTIT 360


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 23.9 bits (50), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 365 SYNHHNCIFKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
           SYNH + I K I    A  K+  +IG  G  G ST   L Y L  I  G I +D   ++ 
Sbjct: 558 SYNHQDAIAKNIKAGTA-VKQGQIIGWIGTTGLSTGPHLHYEL--IVNG-IKVDSTKVRI 613

Query: 424 ITKESLR 430
             +E+L+
Sbjct: 614 PERENLK 620


>gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score = 23.5 bits (49), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 490 RGLKLSGGEKQRVSIARAILKNPPIII 516
           +   LS   ++R+S++++++KNP I I
Sbjct: 63  KNYNLSSSLEKRISLSQSLIKNPRIRI 89


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,920
Number of Sequences: 1233
Number of extensions: 15441
Number of successful extensions: 120
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 53
length of query: 597
length of database: 328,796
effective HSP length: 79
effective length of query: 518
effective length of database: 231,389
effective search space: 119859502
effective search space used: 119859502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 41 (20.4 bits)