HHsearch alignment for GI: 254780577 and conserved domain: TIGR00164
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase homolog; InterPro: IPR004428 Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. Protein in this group have many regions of homology to known phosphatidylserine decarboxylases, including the Gly-Ser motif for chain cleavage and active site generation, but have a shorter amino end and a number of deletions along the length of the alignment to the phosphatidylserine decarboxylases. It is unclear whether these proteins are a form of phosphatidylserine decarboxylase or a related enzyme. They are found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase..
Probab=100.00 E-value=4.3e-34 Score=248.31 Aligned_cols=210 Identities=42% Similarity=0.692 Sum_probs=191.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC-----EEEEEECCCC---
Q ss_conf 07555499999999999999999999999999999999971388876212766088630541-----4323311573---
Q gi|254780577|r 14 IHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERVTPIDPNLLISPADGL-----VSAICEMSPP--- 85 (232)
Q Consensus 14 IakEG~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~FFRdP~R~~~~~~~~ivSPaDG~-----V~~i~~~~~~--- 85 (232)
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~p~dg~~~~~~~~~~~~~~p~~~~ 81 (229)
T TIGR00164 2 IEREGWPIIGAGLPLSLLLGLYHGWISLLFWGFLLFTLYFFRDPDREIPPGPDLVLSPADGRRLSGYIDFLERGNPEVFK 81 (229)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHEEECCCCCEEE
T ss_conf 65333310035678999987630256789999999998863371010589875377146661022210000047731221
Q ss_pred --------CHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCC-EEEE
Q ss_conf --------0000046872699996051101248975315451013146555650101200157068999970898-2999
Q gi|254780577|r 86 --------PELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHG-NIGI 156 (232)
Q Consensus 86 --------~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~-~i~~ 156 (232)
T Consensus 82 dg~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 161 (229)
T TIGR00164 82 DGNCYPLNVDRPFPDGGGLLLSIFMSPFDVHVNRAPWGGKVLYVKHIDGSFPPAFLRKLGTENERNLVLIKTGSGREVGV 161 (229)
T ss_pred CCCCCEEECCCCCCCCCCEEEEEEECEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCEEEEEECCCCEEEE
T ss_conf 68730431200046777258765402000001235667347999851464211011100122223147885067733553
Q ss_pred EEECCCCCCEEEEECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCC
Q ss_conf 9851576550365138998570386688883289899996399736762298899307787971787
Q gi|254780577|r 157 VQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNST 223 (232)
Q Consensus 157 ~qiag~~arrI~~~~~~g~~v~~G~r~G~irfGS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~ 223 (232)
T Consensus 162 ~~~~g~~~~~~~~~~~~g~~~~~g~~~g~~~~g~~~~~~~p~~~~~~~~~g~~~~~g~~~~~~~~~~ 228 (229)
T TIGR00164 162 VQIAGFVARRIVLYVKEGECVERGEKIGLIRFGSRVDLVLPENFEVLVKVGEKVTAGETVLARLPPG 228 (229)
T ss_pred EEHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCEEEEEECCCC
T ss_conf 1023467666654310351010344001454166257873367336662176211231567620578