HHsearch alignment for GI: 254780577 and conserved domain: TIGR01995
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=94.80 E-value=0.1 Score=31.39 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=61.0
Q ss_pred CEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEE
Q ss_conf 60886305414323311573000004687269999605110124897531545101314655565010120015706899
Q gi|254780577|r 66 NLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSL 145 (232)
Q Consensus 66 ~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~ 145 (232)
T Consensus 510 ~~~~~P~~Ge~~~L~eV~D~vFS----sG~mG~G~Ai~P~eG~-~~AP~dG~v~~VF~T-~----------------HAi 567 (660)
T TIGR01995 510 EELYAPVAGEVVPLNEVPDEVFS----SGAMGKGVAILPSEGE-VVAPVDGTVTAVFPT-K----------------HAI 567 (660)
T ss_pred HHCCCCEEEEEEECCCCCCHHHH----HHHCCCCEEEEECCCE-EECCCCCEEEEEECC-C----------------CEE
T ss_conf 32057601346750568841230----2230684589715877-882337789999748-6----------------227
Q ss_pred EEECCCCEEEEEEE-------CCCCCCEEEEECCCCCEEECCCEEEEEEE
Q ss_conf 99708982999985-------15765503651389985703866888832
Q gi|254780577|r 146 VLKTIHGNIGIVQI-------AGFVARRIVCWVKPTMKVEAGMRFGIIRF 188 (232)
Q Consensus 146 ~~~~~~~~i~~~qi-------ag~~arrI~~~~~~g~~v~~G~r~G~irf 188 (232)
T Consensus 568 Gi~~~nG~E~LIHvGIDTV~L~G~~F---e~~V~~Gd~v~~Gq~L~~~D~ 614 (660)
T TIGR01995 568 GIRSDNGVEILIHVGIDTVELKGEYF---EILVKVGDKVKAGQLLLTFDL 614 (660)
T ss_pred EECCCCCEEEEEEEEEEEEEECCEEE---EEEEEECCEEEECCCCCEEEH
T ss_conf 41268972899984123456545012---221456678750663122106