Query gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 136 out of 1089 Neff 7.0 Searched_HMMs 33803 Date Wed Jun 1 15:52:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780577.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2gpr_A Glucose-permease IIA c 98.2 2.3E-05 6.7E-10 55.4 10.1 133 64-218 6-152 (154) 2 >1ax3_A Iiaglc, glucose permea 98.1 6.4E-05 1.9E-09 52.4 10.3 137 63-221 10-161 (162) 3 >1f3z_A EIIA-GLC, glucose-spec 98.0 8.8E-05 2.6E-09 51.4 9.9 138 62-221 9-160 (161) 4 >1iyu_A E2P, dihydrolipoamide 96.3 0.013 3.9E-07 36.9 6.3 65 161-226 10-78 (79) 5 >1k8m_A E2 component of branch 95.0 0.032 9.6E-07 34.2 4.3 59 167-226 22-84 (93) 6 >1dcz_A Transcarboxylase 1.3S 95.0 0.075 2.2E-06 31.8 6.1 53 168-221 21-77 (77) 7 >1bdo_A Acetyl-COA carboxylase 94.9 0.038 1.1E-06 33.8 4.4 55 165-220 21-79 (80) 8 >1qjo_A Dihydrolipoamide acety 94.9 0.05 1.5E-06 33.0 4.9 60 166-226 17-80 (80) 9 >3hbl_A Pyruvate carboxylase; 94.8 0.14 4.1E-06 30.0 7.1 55 169-224 23-81 (82) 10 >2dn8_A Acetyl-COA carboxylase 94.8 0.14 4.2E-06 30.0 7.0 58 169-227 31-91 (100) 11 >1z6h_A Biotin/lipoyl attachme 94.7 0.096 2.8E-06 31.1 6.1 56 167-223 11-70 (72) 12 >3crk_C Dihydrolipoyllysine-re 94.7 0.11 3.3E-06 30.7 6.3 60 166-226 22-86 (87) 13 >2ejm_A Methylcrotonoyl-COA ca 94.6 0.075 2.2E-06 31.8 5.4 63 164-227 22-89 (99) 14 >1ghj_A E2, E2, the dihydrolip 94.4 0.097 2.9E-06 31.1 5.5 53 169-222 21-77 (79) 15 >2kcc_A Acetyl-COA carboxylase 94.1 0.088 2.6E-06 31.3 4.7 59 167-226 17-78 (84) 16 >1gjx_A Pyruvate dehydrogenase 93.9 0.062 1.8E-06 32.3 3.7 58 167-225 19-80 (81) 17 >2d5d_A Methylmalonyl-COA deca 93.6 0.2 6E-06 28.9 5.8 51 169-220 19-73 (74) 18 >2dnc_A Pyruvate dehydrogenase 93.4 0.2 5.9E-06 28.9 5.5 59 168-227 26-89 (98) 19 >2dne_A Dihydrolipoyllysine-re 92.9 0.18 5.2E-06 29.3 4.6 61 163-224 20-86 (108) 20 >2gu1_A Zinc peptidase; alpha/ 92.6 0.76 2.2E-05 25.1 7.9 96 70-188 2-98 (156) 21 >2auk_A DNA-directed RNA polym 92.3 0.072 2.1E-06 31.9 2.1 102 110-224 6-107 (108) 22 >2hsi_A Putative peptidase M23 92.2 0.68 2E-05 25.4 6.9 99 65-187 36-135 (152) 23 >1y8o_B Dihydrolipoyllysine-re 91.8 0.46 1.4E-05 26.5 5.7 62 164-226 41-108 (128) 24 >3bg3_A Pyruvate carboxylase, 91.4 0.22 6.4E-06 28.7 3.7 51 169-220 20-74 (75) 25 >3hbl_A Pyruvate carboxylase; 90.8 0.49 1.5E-05 26.3 5.0 68 60-132 4-71 (82) 26 >2jku_A Propionyl-COA carboxyl 90.7 0.16 4.6E-06 29.6 2.4 61 159-220 28-93 (94) 27 >2k7v_A Dihydrolipoyllysine-re 90.6 0.13 3.8E-06 30.2 1.8 61 165-226 11-76 (85) 28 >2gpr_A Glucose-permease IIA c 90.1 0.3 8.8E-06 27.8 3.4 45 63-109 42-86 (154) 29 >2qf7_A Pyruvate carboxylase p 90.1 0.53 1.6E-05 26.1 4.6 45 170-214 24-72 (79) 30 >1ci3_M Protein (cytochrome F) 88.4 0.2 5.9E-06 28.9 1.5 28 189-216 31-58 (62) 31 >1q90_A Apocytochrome F; membr 87.8 0.23 6.9E-06 28.5 1.5 28 189-216 33-60 (65) 32 >1pmr_A Dihydrolipoyl succinyl 87.7 0.088 2.6E-06 31.3 -0.7 54 168-222 21-78 (80) 33 >2jxm_B Cytochrome F; copper, 85.8 0.28 8.4E-06 27.9 1.1 27 189-215 30-56 (61) 34 >3bg3_A Pyruvate carboxylase, 84.7 0.55 1.6E-05 26.0 2.2 65 62-131 3-67 (75) 35 >1qwy_A Peptidoglycan hydrolas 84.7 2.7 8.1E-05 21.3 6.5 58 110-186 116-174 (209) 36 >1hcz_A Cytochrome F; electron 84.6 0.34 1E-05 27.4 1.0 25 191-215 34-58 (63) 37 >1e2w_A Cytochrome F; electron 84.0 0.5 1.5E-05 26.3 1.7 25 190-214 46-70 (77) 38 >2auk_A DNA-directed RNA polym 80.9 1.1 3.3E-05 23.9 2.5 30 191-221 53-82 (82) 39 >3iyd_D DNA-directed RNA polym 80.3 0.7 2.1E-05 25.3 1.3 25 194-219 58-82 (83) 40 >3i4l_A A-type ATP synthase ca 77.4 0.81 2.4E-05 24.9 0.9 33 169-201 21-55 (88) 41 >1vf5_C Cytochrome F; photosyn 72.1 0.24 7E-06 28.4 -2.9 28 188-215 31-58 (60) 42 >3csq_A Morphogenesis protein 69.8 1.4 4E-05 23.3 0.5 74 102-190 32-107 (169) 43 >3gqb_A V-type ATP synthase al 69.8 1.3 3.9E-05 23.5 0.4 34 168-201 14-48 (77) 44 >2a6h_D DNA-directed RNA polym 69.5 0.73 2.2E-05 25.2 -0.9 36 189-224 176-211 (231) 45 >2f2h_A Putative family 31 glu 69.3 7.5 0.00022 18.4 5.2 55 175-229 22-79 (81) 46 >1zy8_K Pyruvate dehydrogenase 68.1 1.2 3.6E-05 23.7 0.0 52 170-222 24-79 (229) 47 >3it5_A Protease LASA; metallo 67.5 4.7 0.00014 19.7 2.9 53 109-186 50-102 (146) 48 >3bz1_T PSII-T, PSII-TC, photo 67.4 7.3 0.00022 18.5 3.9 19 43-61 12-30 (32) 49 >1vf7_A Multidrug resistance p 64.4 1.7 5.1E-05 22.7 0.2 29 105-133 95-123 (133) 50 >1hqm_D DNA-directed RNA polym 62.1 0.43 1.3E-05 26.7 -3.3 27 189-215 28-54 (55) 51 >2a6h_C DNA-directed RNA polym 61.4 2.1 6.3E-05 22.1 0.2 18 200-218 47-64 (67) 52 >2a6h_D DNA-directed RNA polym 57.8 3.7 0.00011 20.4 0.9 28 190-218 56-83 (119) 53 >2k32_A A; NMR {Campylobacter 57.0 4.6 0.00014 19.8 1.3 24 109-132 69-92 (116) 54 >3cdx_A Succinylglutamatedesuc 53.7 14 0.00041 16.6 6.9 51 165-215 11-67 (89) 55 >2qj8_A MLR6093 protein; NP_10 51.0 15 0.00045 16.3 6.1 51 164-214 120-176 (187) 56 >3fpp_A Macrolide-specific eff 49.2 7.8 0.00023 18.3 1.4 29 105-133 122-150 (161) 57 >3bbo_X Ribosomal protein L27; 48.1 4.4 0.00013 20.0 0.0 27 191-217 148-174 (198) 58 >1qle_C Cytochrome C oxidase p 43.8 20 0.00058 15.6 3.8 48 13-60 10-72 (77) 59 >3iyd_C DNA-directed RNA polym 43.0 4.5 0.00013 19.9 -0.6 14 67-80 15-28 (96) 60 >2bgi_A Ferredoxin-NADP(H) red 42.7 9.1 0.00027 17.8 0.9 65 120-184 41-110 (112) 61 >2f1m_A Acriflavine resistance 42.4 6.7 0.0002 18.7 0.2 30 104-133 107-136 (146) 62 >2g3m_A Maltase, alpha-glucosi 42.4 20 0.0006 15.5 2.7 35 187-222 37-71 (78) 63 >1zko_A Glycine cleavage syste 39.5 23 0.00068 15.1 4.6 41 170-210 52-96 (136) 64 >1uou_A Thymidine phosphorylas 38.6 11 0.00031 17.4 0.7 21 200-221 45-65 (91) 65 >3h9i_A Cation efflux system p 35.8 13 0.00039 16.8 0.9 28 106-133 88-115 (123) 66 >1brw_A PYNP, protein (pyrimid 32.7 13 0.00039 16.7 0.5 14 201-214 53-66 (97) 67 >1xi6_A Extragenic suppressor; 30.1 3.4 0.0001 20.7 -2.9 58 66-134 88-148 (262) 68 >2tpt_A Thymidine phosphorylas 30.0 10 0.00031 17.4 -0.4 14 201-214 55-68 (100) 69 >3iyd_D DNA-directed RNA polym 29.4 27 0.00079 14.7 1.6 19 170-188 88-106 (156) 70 >1fdr_A Flavodoxin reductase; 29.3 17 0.00049 16.1 0.5 66 118-184 26-95 (99) 71 >3h5q_A PYNP, pyrimidine-nucle 28.1 17 0.00049 16.1 0.3 29 53-81 147-176 (247) 72 >1yew_A Particulate methane mo 28.0 25 0.00073 14.9 1.2 39 39-78 11-55 (80) 73 >3e3x_A BIPA; MCSG,PSI2, struc 27.3 36 0.0011 13.8 2.0 19 201-220 30-48 (71) 74 >3ixz_B Potassium-transporting 27.0 36 0.0011 13.8 5.2 29 43-71 54-86 (290) 75 >1so9_A Cytochrome C oxidase a 26.5 37 0.0011 13.8 2.3 27 159-185 90-116 (164) 76 >2e5p_A Protein PHF1, PHD fing 25.6 38 0.0011 13.6 1.9 38 114-151 11-48 (68) 77 >1slu_A Ecotin; serine proteas 24.3 40 0.0012 13.5 2.9 22 184-205 105-128 (142) 78 >2eix_A NADH-cytochrome B5 red 24.0 39 0.0011 13.6 1.6 64 120-184 39-107 (110) 79 >3dkb_A Tumor necrosis factor, 23.3 31 0.00093 14.2 1.0 36 163-201 177-213 (240) 80 >1ydu_A AT5G01610; DUF538, str 23.2 42 0.0013 13.3 4.3 44 181-224 73-116 (170) 81 >2id0_A Exoribonuclease 2; RNA 22.3 24 0.0007 15.0 0.2 35 180-214 11-45 (64) 82 >1ep3_B Dihydroorotate dehydro 20.6 48 0.0014 13.0 1.8 65 120-184 31-99 (103) 83 >2uv8_G Fatty acid synthase su 20.2 20 0.0006 15.5 -0.5 34 52-86 39-72 (158) No 1 >>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} (A:) Probab=98.18 E-value=2.3e-05 Score=55.37 Aligned_cols=133 Identities=13% Similarity=0.185 Sum_probs=93.2 Q ss_pred CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEE Q ss_conf 76608863054143233115730000046872699996051101248975315451013146555650101200157068 Q gi|254780577|r 64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQ 143 (232) Q Consensus 64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~ 143 (232) .+..++||++|++..++++.|+.... +--..-+.|.. +-+...||++|+|..+.-. +- T Consensus 6 k~~~i~aP~~G~~i~l~~v~D~vFa~--~~~G~G~aI~P---~~~~i~AP~dG~I~~i~~T-----------------~H 63 (154) T 2gpr_A 6 KNLKVLAPCDGTIITLDEVEDEVFKE--RMLGDGFAINP---KSNDFHAPVSGKLVTAFPT-----------------KH 63 (154) T ss_dssp CCEEEECSSSEEEECGGGSSCHHHHT--TSSCEEEEEEE---SSSEEECSSCEEEEECCTT-----------------CS T ss_pred CCEEEEECCCCEEEECCCCCCHHHCC--CCCCCEEEEEE---CCCEEECCCCEEEEEECCC-----------------CC T ss_conf 73199964761798811087834267--89616599990---6997991788699998789-----------------96 Q ss_pred EEEEECCCCEEEEEEECCC----CCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CCEEEEECCCE Q ss_conf 9999708982999985157----65503651389985703866888832--------8989999639--97367622988 Q gi|254780577|r 144 SLVLKTIHGNIGIVQIAGF----VARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DANIRVEIGQK 209 (232) Q Consensus 144 ~~~~~~~~~~i~~~qiag~----~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~~~~V~~Gq~ 209 (232) .+.+++++|.-.+++++-- ...-..+.+++||+|++||.+.-+-+ --.+-+.+.+ +.++.....+. T Consensus 64 Ai~i~~~~G~eiLiHiGidTv~L~g~gF~~~v~~Gd~V~~G~~L~~~d~~~i~~~g~~~~~~vv~~n~~~~~i~~~~~~~ 143 (154) T 2gpr_A 64 AFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGE 143 (154) T ss_dssp EEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCCCSCBCCEE T ss_pred EEEEECCCCCEEEEEECCCHHCCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCCCCEEEECCCCC T ss_conf 99999299989999974243014895158997489999189999998599998639998269999879872577723684 Q ss_pred EEEEEEEEE Q ss_conf 993077879 Q gi|254780577|r 210 TVAGETVIA 218 (232) Q Consensus 210 V~aGeTila 218 (232) |++|++++. T Consensus 144 V~~gd~i~~ 152 (154) T 2gpr_A 144 VKQGDVVAI 152 (154) T ss_dssp ECTTCEEEE T ss_pred CCCCCEEEE T ss_conf 648999999 No 2 >>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} (A:) Probab=98.05 E-value=6.4e-05 Score=52.36 Aligned_cols=137 Identities=11% Similarity=0.181 Sum_probs=94.9 Q ss_pred CCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEE Q ss_conf 27660886305414323311573000004687269999605110124897531545101314655565010120015706 Q gi|254780577|r 63 IDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNER 142 (232) Q Consensus 63 ~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER 142 (232) .+...++||++|++..++++.|+.-.+-.=++.. .|. | +-+...||++|+|..+.-. + T Consensus 10 ~~~~~i~aP~~G~vi~L~~v~D~vFs~~~~G~G~--aI~--P-~~~~i~AP~dG~I~~i~~T-----------------~ 67 (162) T 1ax3_A 10 IGEEVFVSPITGEIHPITDVPDQVFSGKMMGDGF--AIL--P-SEGIVVSPVRGKILNVFPT-----------------K 67 (162) T ss_dssp TCCSSCCCCCSEEEEEGGGSSSHHHHTCTTSEEE--EEE--E-CSSEEEESCCEEEEECCSS-----------------S T ss_pred CCCEEEEECCCCEEEECCCCCCHHHCCCCCCCEE--EEE--E-CCCEEECCCCEEEEEECCC-----------------C T ss_conf 4976999437857988002978576557823649--999--7-5998981788099999279-----------------9 Q ss_pred EEEEEECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECCC--C-EEEEECC Q ss_conf 8999970898299998515----765503651389985703866888832--------89899996399--7-3676229 Q gi|254780577|r 143 QSLVLKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPKD--A-NIRVEIG 207 (232) Q Consensus 143 ~~~~~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~~--~-~~~V~~G 207 (232) -.+.+++++|--.+++++- +-..-..+++++||+|++||.+.-+-+ -..+-+.+.+. + .+..... T Consensus 68 HAi~i~~~~G~evLiHiGidTv~L~g~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~~~~~~t~vv~~n~~~~~~i~~~~~ 147 (162) T 1ax3_A 68 HAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKAS 147 (162) T ss_dssp SEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHHHGGGSSCCCEEEEESSGGGTCEEEECCC T ss_pred CEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEEECCCCCEEEEECC T ss_conf 79999979997999998304201489616899868999948989778789999860999734999970641635887058 Q ss_pred CEEEEEEEEEEEEC Q ss_conf 88993077879717 Q gi|254780577|r 208 QKTVAGETVIAEFN 221 (232) Q Consensus 208 q~V~aGeTila~l~ 221 (232) ..+.+|+++|..+. T Consensus 148 ~~v~~g~~~i~~i~ 161 (162) T 1ax3_A 148 GSVNREQEDIVKIE 161 (162) T ss_dssp SEECTTCSSSEEEE T ss_pred CCEEECCCEEEEEE T ss_conf 85771994599997 No 3 >>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} (A:) Probab=97.99 E-value=8.8e-05 Score=51.42 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=92.5 Q ss_pred CCCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCE Q ss_conf 12766088630541432331157300000468726999960511012489753154510131465556501012001570 Q gi|254780577|r 62 PIDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNE 141 (232) Q Consensus 62 ~~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NE 141 (232) ......++||++|++..++++.|+...+-.=++ .+..-|- -+..+||++|+|..+.-. T Consensus 9 ~~~~~~i~aP~~G~ii~L~~v~D~vFs~~~lG~----G~aI~P~-~~~v~AP~dG~I~~v~~T----------------- 66 (161) T 1f3z_A 9 DTGTIEIIAPLSGEIVNIEDVPDVVFAEKIVGD----GIAIKPT-GNKMVAPVDGTIGKIFET----------------- 66 (161) T ss_dssp ---CEEEECSSCEEEEEGGGSSSHHHHTTSSCE----EEEEEEC-SSEEECSSSEEEEEECTT----------------- T ss_pred CCCCEEEEECCCCEEEECCCCCCHHHHCCCCCC----EEEEECC-CCEEEECCCEEEEEECCC----------------- T ss_conf 688589995167279883419895880788227----5999836-998992899799998678----------------- Q ss_pred EEEEEEECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CCEEEEECC Q ss_conf 68999970898299998515----765503651389985703866888832--------8989999639--973676229 Q gi|254780577|r 142 RQSLVLKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DANIRVEIG 207 (232) Q Consensus 142 R~~~~~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~~~~V~~G 207 (232) +-.+.+++++|.-.+++++- +-..-...++++||+|++||.+.-+-+ --.+-+.+++ +.+...... T Consensus 67 ~HAigi~~~~G~eiLiHiGidTv~l~g~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~~~~~~~~vv~~n~~~~~~~~~~~ 146 (161) T 1f3z_A 67 NHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLS 146 (161) T ss_dssp SSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEESCGGGCSEEEECC T ss_pred CCEEEEEECCCCEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCHHCCEEEECC T ss_conf 96999993998799999663654328964389973899998999999986999986399981699996647603035147 Q ss_pred CEEEEEEEEEEEEC Q ss_conf 88993077879717 Q gi|254780577|r 208 QKTVAGETVIAEFN 221 (232) Q Consensus 208 q~V~aGeTila~l~ 221 (232) +.+.+|++.|..+. T Consensus 147 ~~~~~~~d~l~~i~ 160 (161) T 1f3z_A 147 GSVTVGETPVIRIK 160 (161) T ss_dssp SEECTTTSEEEEEE T ss_pred CCEEECCCEEEEEE T ss_conf 84862991699998 No 4 >>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} (A:) Probab=96.28 E-value=0.013 Score=36.87 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=51.8 Q ss_pred CCCCCEEEEECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 5765503651389985703866888832-898999963997---36762298899307787971787787 Q gi|254780577|r 161 GFVARRIVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 161 g~~arrI~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) |..++-...++++|+.+++||.+..+.- ....++.-|.+- +++++.||.|.+|+ +|+.+.+..++ T Consensus 10 g~~~~i~~~~v~~Gd~V~~G~~l~~ie~~K~~~~v~ap~~G~i~~i~v~~G~~V~~G~-~L~~i~~~~~~ 78 (79) T 1iyu_A 10 GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGD-AIIELEPAAGA 78 (79) T ss_dssp SSEEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTS-EEEEEECCCSC T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCCCC T ss_conf 8968999998189799948999999990773148988999999999358969989999-99999467678 No 5 >>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} (A:) Probab=95.02 E-value=0.032 Score=34.25 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=47.2 Q ss_pred EEEECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 3651389985703866888832-898999963997---36762298899307787971787787 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) ..-++++|+.+++||.+..+.- ...+++.-|.+- ++.++.||.|..|+ +|+++....++ T Consensus 22 ~~~~v~~Gd~V~~G~~l~~iet~k~~~~v~ap~~G~i~~i~v~~G~~V~~G~-~l~~i~~~~~~ 84 (93) T 1k8m_A 22 KEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGK-PLVDIETEALK 84 (93) T ss_dssp EEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTS-EEEEEECSCCT T ss_pred EEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCCCC T ss_conf 9998079899938998999984870788976889999999819999978999-99999767875 No 6 >>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin; NMR {Propionibacterium freudenreichiisubsp} (A:) Probab=95.00 E-value=0.075 Score=31.81 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=40.4 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEEC Q ss_conf 651389985703866888832-89899996399---7367622988993077879717 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFN 221 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~ 221 (232) ..++++|+.+++||.++.+.- ....++.-|.+ .+++++.||.|.+|+ .|+++. T Consensus 21 ~~~V~~Gd~V~~g~~l~~ie~~k~~~~i~a~~~G~i~~i~~~~G~~V~~G~-~l~~ia 77 (77) T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQ-GLIKIG 77 (77) T ss_dssp EECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTS-EEEEEC T ss_pred EEECCCCCEEECCCEEEEEECCCCCEEEEECCCEEEEEEECCCCCEECCCC-EEEEEC T ss_conf 999479999968987999981786568980889899898607989989999-999939 No 7 >>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} (A:) Probab=94.92 E-value=0.038 Score=33.79 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=44.5 Q ss_pred CEEEEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 503651389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 165 RRIVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 165 rrI~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) +....++++|+.+++||.+..+.- .+.+++.-|.+ .+++++.||.|..|+ .|+.+ T Consensus 21 ~i~~~~v~~Gd~V~~gd~l~~iE~~k~~~~v~a~~~G~I~~i~v~~G~~V~~G~-~l~~i 79 (80) T 1bdo_A 21 PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE-PLVVI 79 (80) T ss_dssp TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTC-EEEEE T ss_pred CCCCCEEECCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 999808605997903889999993651147778999899899848979989999-99997 No 8 >>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} (A:) Probab=94.86 E-value=0.05 Score=32.98 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=47.8 Q ss_pred EEEEECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 03651389985703866888832-898999963997---36762298899307787971787787 Q gi|254780577|r 166 RIVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 166 rI~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) -..-++++|+.+++||.+..+.- ....++.-|.+- +++++.||.|..|+ +|+.+.+..++ T Consensus 17 i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~a~~~G~i~~i~v~~G~~V~~G~-~L~~i~~~~~s 80 (80) T 1qjo_A 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEVEGAA 80 (80) T ss_dssp EEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTC-CCEEEESCCCC T ss_pred EEEEEECCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCCCC T ss_conf 99999179799989998999990754519984652799999958989958999-99999646589 No 9 >>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1069-1150) Probab=94.79 E-value=0.14 Score=29.98 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=42.7 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCEEEEEEEEEEEECCCC Q ss_conf 51389985703866888832-898999963997---367622988993077879717877 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) .++++|+.+++||.++.+.= ....++.-|.+- +++++.||.|..|+ +|+.+.+.. T Consensus 23 ~~v~~G~~V~~G~~l~~ie~~k~~~~i~a~~~G~i~~i~~~~G~~V~~G~-~L~~i~~~~ 81 (82) T 3hbl_A 23 VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD-LLIEIEKAT 81 (82) T ss_dssp ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTB-EEEEEC--- T ss_pred EEECCCCEECCCCEEEEEEHHCCCCCCCCCCCEEEEEEEECCCCEECCCC-EEEEEEECC T ss_conf 98089999799998999965208671538999189799818959878999-799998478 No 10 >>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=94.76 E-value=0.14 Score=29.97 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=44.8 Q ss_pred EECCCCCEEECCCEEEEEEEC-CEEEEEECCC--CEEEEECCCEEEEEEEEEEEECCCCCCC Q ss_conf 513899857038668888328-9899996399--7367622988993077879717877872 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKD--ANIRVEIGQKTVAGETVIAEFNSTKPPL 227 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~--~~~~V~~Gq~V~aGeTila~l~~~~~~~ 227 (232) .++++||++++||.+..+.-. ..+++.-|.+ .+++++.||.|..|+ .|+++....++- T Consensus 31 ~~V~~Gd~V~~Gd~l~~iE~mK~~~~v~a~~~G~v~~~v~~G~~V~~G~-~L~~i~~~~~~~ 91 (100) T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGC-VVARLELDDPSK 91 (100) T ss_dssp ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEEECSCTTCEECSSC-EEEEECCSCSCC T ss_pred EEECCCCEEECCCEEEEEECCCCCCEEECCCCEEEEEEEEECCEECCCC-EEEEEECCCCCC T ss_conf 9947999990595499998276462486473849999975175386999-999997788664 No 11 >>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* (A:) Probab=94.73 E-value=0.096 Score=31.08 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=43.5 Q ss_pred EEEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC Q ss_conf 3651389985703866888832-89899996399---736762298899307787971787 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) ...++++|+.+++||.++.+.- ....++.-|.+ .+++++.||.|..|+ .|+++... T Consensus 11 ~~~~v~~Gd~V~~G~~l~~ve~~k~~~~i~ap~~G~i~~i~~~~G~~V~~G~-~L~~i~~~ 70 (72) T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGD-VLLELSNS 70 (72) T ss_dssp EEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTC-EEEEEGGG T ss_pred EEEECCCCCEEECCCEEEEEECCCCCCEEECCCCCEEEEEEECCCCEECCCC-EEEEEECC T ss_conf 9999279899917989999973665421772312099999738989989999-99999689 No 12 >>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* (C:) Probab=94.68 E-value=0.11 Score=30.68 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=47.0 Q ss_pred EEEEECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCC-EEEEEEEEEEEECCCCCC Q ss_conf 03651389985703866888832-898999963997---36762298-899307787971787787 Q gi|254780577|r 166 RIVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQ-KTVAGETVIAEFNSTKPP 226 (232) Q Consensus 166 rI~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq-~V~aGeTila~l~~~~~~ 226 (232) -...++++|+++++||.+..+.= ....++.-|.+- +++++.|+ .|..|+ +|+++.+...+ T Consensus 22 i~~w~v~~Gd~V~~gd~l~~iet~K~~~~v~A~~~G~i~~i~v~~G~~~V~~G~-~l~~i~~~~~~ 86 (87) T 3crk_C 22 VQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEAD 86 (87) T ss_dssp EEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTC-EEEEEESSSTT T ss_pred EEEEEECCCCEEECCCCEEEEEECCEEEEEEECCCEEEEEEEECCCCEEECCCC-EEEEEECCCCC T ss_conf 989990899999726329999934488999727639999999645986975999-89999676786 No 13 >>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} (A:) Probab=94.63 E-value=0.075 Score=31.79 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=48.2 Q ss_pred CCEEE-EECCCCCEEECCCEEEEEE-ECCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCCCC Q ss_conf 55036-5138998570386688883-289899996399---7367622988993077879717877872 Q gi|254780577|r 164 ARRIV-CWVKPTMKVEAGMRFGIIR-FGSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKPPL 227 (232) Q Consensus 164 arrI~-~~~~~g~~v~~G~r~G~ir-fGS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~~~ 227 (232) ..++. ..+++|+++++||.+..+. ....+++.-|.+ .+++++.||.|..|+ .|+.+......- T Consensus 22 ~G~i~~~~v~~Gd~V~~gd~l~~ie~~k~~~~i~a~~~G~i~~i~v~~G~~V~~g~-~L~~i~~~~~~~ 89 (99) T 2ejm_A 22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHT-PLVEFEEEESDK 89 (99) T ss_dssp SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTC-BCEEECCCCSCC T ss_pred CEEEEEEECCCCCEEECCCCEEEEECCCCCCEEECCCEEEEEEEEECCCCEECCCC-EEEEEECCCCCC T ss_conf 97999998489999935960999973665604887611299999708989968999-999996587775 No 14 >>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} (A:) Probab=94.39 E-value=0.097 Score=31.06 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=43.5 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCEEEEEEEEEEEECC Q ss_conf 51389985703866888832-898999963997---3676229889930778797178 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~ 222 (232) -++++||.+++||.+..+.- ....++.-|.+- +++++.||.|..|+ +|+.+.+ T Consensus 21 ~~v~~Gd~V~~Gd~l~~ie~~k~~~~v~a~~~G~v~~i~v~~G~~V~~G~-~l~~i~~ 77 (79) T 1ghj_A 21 WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGE-LLGKLTE 77 (79) T ss_dssp CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTC-EEEEECC T ss_pred EEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 99279799989999999994640899974788999999918999988999-9999968 No 15 >>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} (A:) Probab=94.07 E-value=0.088 Score=31.35 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=46.5 Q ss_pred EEEECCCCCEEECCCEEEEEEE-CCEEEEEECCC--CEEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 3651389985703866888832-89899996399--736762298899307787971787787 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD--ANIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~--~~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) +..++++|+.+++||.+..+.- ....++.-|.+ .+..++.||.|..|+ +|+++...+.+ T Consensus 17 ~~~~v~~Gd~V~~g~~l~~iE~~K~~~~i~a~~~G~v~~~v~~G~~V~~G~-~l~~i~~~~~~ 78 (84) T 2kcc_A 17 TQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGC-VVARLELDDLE 78 (84) T ss_dssp EEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTC-CCEEEECSCSC T ss_pred EEEEECCCCEECCCCEEEEEEECCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCCC T ss_conf 999968979998999999999522478998888989999989989989999-99999358840 No 16 >>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} (A:) Probab=93.89 E-value=0.062 Score=32.34 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=46.2 Q ss_pred EEEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCC Q ss_conf 3651389985703866888832-89899996399---73676229889930778797178778 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKP 225 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~ 225 (232) ...++++|+++++||.+..+.- ....++.-|.+ .+++++.||.|..|+ .|+.+.+..+ T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ve~~k~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~i~~~~~ 80 (81) T 1gjx_A 19 IAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGG-LIVVVEAEGT 80 (81) T ss_dssp EEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSS-CCCEECCSCC T ss_pred EEEEECCCCEECCCCEEEEEEECCCEEEEEECCCEEEEEEECCCCCEECCCC-EEEEEECCCC T ss_conf 9999189799979998999992785899990534399999818989978999-9999934757 No 17 >>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A (A:) Probab=93.58 E-value=0.2 Score=28.89 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=35.9 Q ss_pred EECCCCCEEECCCEEEEEEEC-CEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 513899857038668888328-9899996399---736762298899307787971 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) ..+++||.+++||.+..+.=. -..++.-|.+ .+++++.||.|.+|+ .|+.+ T Consensus 19 ~~v~~Gd~V~~Gd~la~ie~~k~~~~v~ap~~G~i~~~~~~~G~~V~~G~-~l~~i 73 (74) T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQ-PLIEL 73 (74) T ss_dssp ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTC-EEEEE T ss_pred EECCCCCEEECCCEEEEEECCCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 99489999969988999984787538863778899899968989989999-99993 No 18 >>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=93.37 E-value=0.2 Score=28.93 Aligned_cols=59 Identities=24% Similarity=0.146 Sum_probs=46.3 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCC-EEEEEEEEEEEECCCCCCC Q ss_conf 651389985703866888832-898999963997---36762298-8993077879717877872 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQ-KTVAGETVIAEFNSTKPPL 227 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq-~V~aGeTila~l~~~~~~~ 227 (232) .-++++||.+++||.+..+.- ...+++.-|.+- ++.|+.|+ .|..|+ +|+++.....+- T Consensus 26 ~w~v~~Gd~V~~Gd~i~~iE~~K~~~~v~A~~~G~i~~i~v~~G~~~V~~G~-~l~~i~~~~~~~ 89 (98) T 2dnc_A 26 KWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGS-LIGLIVEEGEDW 89 (98) T ss_dssp EESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSC-EEEEEECTTSCS T ss_pred EEEECCCCEEEECCCEEEEECCCEEEEEECCCCEEEEEEEEEECCCEECCCC-EEEEEECCCCCC T ss_conf 9990899999707519999838378999758540999999962984883899-899991488764 No 19 >>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} (A:) Probab=92.86 E-value=0.18 Score=29.32 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=46.2 Q ss_pred CCCEEE-EECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCC-EEEEEEEEEEEECCCC Q ss_conf 655036-51389985703866888832-898999963997---36762298-8993077879717877 Q gi|254780577|r 163 VARRIV-CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQ-KTVAGETVIAEFNSTK 224 (232) Q Consensus 163 ~arrI~-~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq-~V~aGeTila~l~~~~ 224 (232) ...+|. -++++||.+++||.+.-+.- ...++|.-|.+- +++++.|+ .|..|+ +|+.+.... T Consensus 20 ~~g~i~~w~v~~Gd~V~~Gd~l~~vEt~K~~~~i~Ap~~G~i~~ilv~~Gd~~V~~G~-~l~~i~~~~ 86 (108) T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGA-IICITVGKP 86 (108) T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTC-EEEEEESCH T ss_pred CEEEEEEEECCCCCEEECCCCEEEEEECCEEEEEEECHHHEEEEEEECCCCEEECCCC-EEEEECCCC T ss_conf 3699989981899999606538999808676899716201687888654981876999-899990586 No 20 >>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:206-361) Probab=92.56 E-value=0.76 Score=25.07 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=54.3 Q ss_pred EECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEEC Q ss_conf 63054143233115730000046872699996051101248975315451013146555650101200157068999970 Q gi|254780577|r 70 SPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKT 149 (232) Q Consensus 70 SPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~ 149 (232) -|++|+|+.-=-.. ......+.....-.|-+.-.--.-.+||.+|+|.......+. =..+.+++ T Consensus 2 wP~~g~i~~~fg~~--~~~~~~~~~~~h~GiDi~~~~g~~V~A~~~G~V~~~~~~~~~--------------g~~V~i~h 65 (156) T 2gu1_A 2 DKAYRQITSGFNPK--RKHPVTGRVVPHNGTDFATPIGAPVYSTGDGKVIVVRKHPYA--------------GNYLVIEH 65 (156) T ss_dssp CGGGCCEEECCBTT--CBCTTTCCBCCBCSEEECCCTTCEEECSSSEEEEEEEEETTT--------------EEEEEEEC T ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEECCCCCEEECCCCCEEEEECCCCCC--------------CCEEEEEC T ss_conf 13444335533322--232124753113435875369962311346235761247765--------------64599974 Q ss_pred CCCEEEEE-EECCCCCCEEEEECCCCCEEECCCEEEEEEE Q ss_conf 89829999-8515765503651389985703866888832 Q gi|254780577|r 150 IHGNIGIV-QIAGFVARRIVCWVKPTMKVEAGMRFGIIRF 188 (232) Q Consensus 150 ~~~~i~~~-qiag~~arrI~~~~~~g~~v~~G~r~G~irf 188 (232) .++-..+- +.. + ..+++|++|++||.+|.+.- T Consensus 66 ~~g~~~~y~~l~-----~--~~v~~G~~V~~G~~IG~~g~ 98 (156) T 2gu1_A 66 NSVYKTRYLHLD-----K--ILVKKGQLVKRGQKIALAGA 98 (156) T ss_dssp SSSEEEEEEEES-----E--ECCCTTCEECTTCEEEECCC T ss_pred CCCEEEEEECCC-----C--CEECCCCEECCCCEEEEECC T ss_conf 997478883343-----2--12188999997998997768 No 21 >>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} (A:83-190) Probab=92.33 E-value=0.072 Score=31.92 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=58.1 Q ss_pred EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEEEC Q ss_conf 89753154510131465556501012001570689999708982999985157655036513899857038668888328 Q gi|254780577|r 110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFG 189 (232) Q Consensus 110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~irfG 189 (232) +-+=.+|+|...-..+|.......++..-.-++..+..+... .-+.-+-.+|...-..|..++.. .-| T Consensus 6 IIsE~~G~v~f~DiieGvT~~e~~De~TG~~~~vVie~k~~~------~~~~~l~P~I~I~d~~G~~~~~~------~~~ 73 (108) T 2auk_A 6 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT------AGGKDLRPALKIVDAQGNDVLIP------GTD 73 (108) T ss_dssp EECSSCEEEEEESCCBTTTEEEEECTTTCCEEEEECCTTTSC------STTTTCCCEEEEECTTSCBCBCT------TSS T ss_pred EEEECCCEEEEEEEEECEEEEEEEECCCCCEEEEEECCCCCC------CCCCCCCCEEEEECCCCCEEEEC------CCC T ss_conf 887216658999974031588987247891689985153455------55556684699985789727715------999 Q ss_pred CEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 98999963997367622988993077879717877 Q gi|254780577|r 190 SRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 190 S~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) .....+||.++.+.|+.||+|++|. +||+++... T Consensus 74 ~~a~Y~LP~ga~l~V~dG~~V~~Gd-vlAkiPres 107 (108) T 2auk_A 74 MPAQYFLPGKAIVQLEDGVQISSGD-TLARIPQES 107 (108) T ss_dssp CBCEEECCTTCEESSCTTCEECTTC-EEEEEECCC T ss_pred CCEEEECCCCEEEEECCCCEECCCC-EEEECCCCC T ss_conf 6189977999699983989983888-999885235 No 22 >>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} (A:116-267) Probab=92.18 E-value=0.68 Score=25.39 Aligned_cols=99 Identities=17% Similarity=0.052 Sum_probs=57.1 Q ss_pred CCEEEEECCCCEEEE-EECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEE Q ss_conf 660886305414323-3115730000046872699996051101248975315451013146555650101200157068 Q gi|254780577|r 65 PNLLISPADGLVSAI-CEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQ 143 (232) Q Consensus 65 ~~~ivSPaDG~V~~i-~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~ 143 (232) ......|++|.++.- ....++. .+.....-.|-++.-.=...+||.+|+|.......+. -. T Consensus 36 ~~~~~~P~~g~~~~~fg~~~~~~----~~~~~~h~Gidi~~~~g~~V~A~~~G~V~~~~~~~~~--------------g~ 97 (152) T 2hsi_A 36 NLMLDKPVDGPLSSPFGLRRFFN----GEERNPHSGLDFAVPAGTPIKAPAAGKVILIGDYFFN--------------GK 97 (152) T ss_dssp CSSCCCSSSSCBCSCC----------------CCCSEEECCCTTCEEECSSCEEEEEEEEETTT--------------EE T ss_pred CCCCCCCCCCCCCCCCHHEECCC----CCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCC--------------CE T ss_conf 34320012332246700033012----3566774156986689971335311003101345667--------------43 Q ss_pred EEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEE Q ss_conf 99997089829999851576550365138998570386688883 Q gi|254780577|r 144 SLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIR 187 (232) Q Consensus 144 ~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~ir 187 (232) .+.+++.++...+-.--. ...+++||.|++||.+|.+. T Consensus 98 ~v~i~h~~g~~t~Y~~l~------~v~V~~G~~V~~Gq~IG~~G 135 (152) T 2hsi_A 98 TVFVDHGQGFISMFCHLS------KIDVKLGQQVPRGGVLGKVG 135 (152) T ss_dssp EEEEEEETTEEEEEEEES------EECSCTTCEECTTCEEEECC T ss_pred EEEEECCCCCEEEECCCC------CCCCCCCCEECCCCEEEEEC T ss_conf 999976997368861656------13548899999899899855 No 23 >>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} (B:) Probab=91.83 E-value=0.46 Score=26.50 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=47.0 Q ss_pred CCEEE-EECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCC-EEEEEEEEEEEECCCCCC Q ss_conf 55036-51389985703866888832-898999963997---36762298-899307787971787787 Q gi|254780577|r 164 ARRIV-CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQ-KTVAGETVIAEFNSTKPP 226 (232) Q Consensus 164 arrI~-~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq-~V~aGeTila~l~~~~~~ 226 (232) ...|. .++++||.|++||.+..+.- ....+|.-|.+- ++.|+.|+ .|..|+ +|+.+...... T Consensus 41 ~g~i~~~~v~~Gd~V~~Gd~l~~iEt~K~~~~i~A~~~G~v~~i~v~~G~~~V~~G~-~L~~i~~~~~~ 108 (128) T 1y8o_B 41 MGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEAD 108 (128) T ss_dssp EEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC-EEEEEESSGGG T ss_pred EEEEEEEEECCCCEEEECCCEEEEECCCEEEEEECCCCCCEEEEEECCCCEEECCCC-EEEEEECCCCC T ss_conf 799999991899999606309999738578999606572176989667986873899-89999357666 No 24 >>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:644-718) Probab=91.44 E-value=0.22 Score=28.71 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=36.5 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 51389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) .++++||.+++||.+..+.- ....++.-|.+ .+++++.||.|..|+ .|+.+ T Consensus 20 ~~v~~Gd~V~~G~~l~~ie~~k~~~~v~a~~~G~i~~~~~~~G~~v~~G~-~L~~i 74 (75) T 3bg3_A 20 IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDD-LILEI 74 (75) T ss_dssp ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSC-EEECB T ss_pred EEECCCCEECCCCEEEEEEHHCCCCEECCCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 99699898799998999963117660527999089899977989888998-89996 No 25 >>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1069-1150) Probab=90.81 E-value=0.49 Score=26.33 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=31.4 Q ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHH Q ss_conf 6212766088630541432331157300000468726999960511012489753154510131465556501 Q gi|254780577|r 60 VTPIDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAA 132 (232) Q Consensus 60 ~~~~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~ 132 (232) -.+.++..+.||..|+|..+-...+.. .+.+ ..+...-+--...-.+||.+|+|.+.....|...... T Consensus 4 a~~~~~~~i~ap~~G~i~~~~v~~G~~---V~~G--~~l~~ie~~k~~~~i~a~~~G~i~~i~~~~G~~V~~G 71 (82) T 3hbl_A 4 ADKSNPSHIGAQMPGSVTEVKVSVGET---VKAN--QPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATG 71 (82) T ss_dssp CCTTCSSEEECSSSEEEEEECCCTTCE---ECTT--CEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTT T ss_pred CCCCCCCEEECCCCEEEEEEEECCCCE---ECCC--CEEEEEEHHCCCCCCCCCCCEEEEEEEECCCCEECCC T ss_conf 789999777068984789998089999---7999--9899996520867153899918979981895987899 No 26 >>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} (A:) Probab=90.67 E-value=0.16 Score=29.65 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=44.1 Q ss_pred ECCCCCCEE-EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 515765503-651389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 159 IAGFVARRI-VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 159 iag~~arrI-~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) +......+| ..++++|+.+++||.+..+.- ...+++.-|.+ .+++++.||.|..|+ .|+.+ T Consensus 28 i~ap~~G~i~~~~V~~Gd~V~~G~~i~~ie~~k~~~~i~a~~~G~i~~i~~~~G~~V~~G~-~L~~i 93 (94) T 2jku_A 28 LRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGD-LLVEL 93 (94) T ss_dssp CCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------ T ss_pred EECCCCCEEEEEEECCCCEEECCCEEEEEECCCCCEEEEEEECEEEEEEEECCCCEECCCC-EEEEE T ss_conf 9799997688999379999916966999986777507986514499999728979989999-99997 No 27 >>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} (A:) Probab=90.57 E-value=0.13 Score=30.23 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=44.4 Q ss_pred CEEEE-ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 50365-1389985703866888832-89899996399---736762298899307787971787787 Q gi|254780577|r 165 RRIVC-WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 165 rrI~~-~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) .++.- ++++|+.+++||.+..+.- ...+++.-|.+ .+++++.||.|..|+ .|+.+.+.+.. T Consensus 11 G~v~~~~v~~Gd~V~~g~~l~~iet~k~~~~i~a~~~G~i~~i~~~~G~~V~~G~-~L~~i~~~~~~ 76 (85) T 2k7v_A 11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEVEGAA 76 (85) T ss_dssp CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTS-EEEEEECCSSC T ss_pred EEEEEEEECCCCEECCCCEEEEEEECCCEEEEECCCEEEEEEEECCCCCEECCCC-EEEEEECCCCC T ss_conf 8998999789999928988999993673599982753599999818989989999-99999748877 No 28 >>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} (A:) Probab=90.13 E-value=0.3 Score=27.77 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=19.9 Q ss_pred CCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCE Q ss_conf 27660886305414323311573000004687269999605110124 Q gi|254780577|r 63 IDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHV 109 (232) Q Consensus 63 ~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~ 109 (232) +.++.++||+||+|+.+-..... ..+...+...+-|-+..-.+.. T Consensus 42 P~~~~i~AP~dG~I~~i~~T~HA--i~i~~~~G~eiLiHiGidTv~L 86 (154) T 2gpr_A 42 PKSNDFHAPVSGKLVTAFPTKHA--FGIQTKSGVEILLHIGLDTVSL 86 (154) T ss_dssp ESSSEEECSSCEEEEECCTTCSE--EEEECTTSCEEEEECSSSGGGG T ss_pred ECCCEEECCCCEEEEEECCCCCE--EEEECCCCCEEEEEECCCHHCC T ss_conf 06997991788699998789969--9999299989999974243014 No 29 >>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1087-1165) Probab=90.06 E-value=0.53 Score=26.11 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=18.0 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEE Q ss_conf 1389985703866888832-89899996399---736762298899307 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGE 214 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGe 214 (232) ++++||.+++||.+..+.- ....++.-|.+ .+++++.||.|..|+ T Consensus 24 ~v~~Gd~V~~Gd~l~~ie~~k~~~~i~a~~~G~V~~i~~~~G~~V~~G~ 72 (79) T 2qf7_A 24 FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKD 72 (79) T ss_dssp CCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTB T ss_pred EECCCCEECCCCEEEEEEHHHCCCCCCCCCCEEEEEEEECCCCEECCCC T ss_conf 9689899799998999965208671428999399799828959978999 No 30 >>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit; HET: HEM; 1.90A {Phormidium laminosum} (M:170-231) Probab=88.43 E-value=0.2 Score=28.94 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.9 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |......+|.+.++.|+.||+|++|+.+ T Consensus 31 Ge~~~y~ip~g~~l~V~~Gd~V~~Gq~L 58 (62) T 1ci3_M 31 GTTIVDKIPAGPELIVSEGEEVAAGAAL 58 (62) T ss_dssp SCEEEEEECSSSCBCCCTTCEECTTCBS T ss_pred CCEEEEECCCCCEEEECCCCEECCCCCC T ss_conf 9898996689980477179998289812 No 31 >>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} (A:169-233) Probab=87.76 E-value=0.23 Score=28.49 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=20.9 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |-.....+|.+.++.|+.||+|++|+.+ T Consensus 33 ge~~~y~ip~~~~l~V~eGd~V~~Gq~L 60 (65) T 1q90_A 33 GEVVVDKIPAGPDLIVKEGQTVQADQPL 60 (65) T ss_dssp SCEEEEEECSSSCBCCCTTCEECTTCBS T ss_pred CCEEEEECCCCCEEEECCCCEEECCCCC T ss_conf 9889997489997897689998389803 No 32 >>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} (A:) Probab=87.67 E-value=0.088 Score=31.33 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=42.2 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 651389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) .-++++||.+++||.+..+.- ....++.-|.+ .+++++.||.|..|+ +|+.+.+ T Consensus 21 ~~~v~~Gd~V~~g~~l~~ie~~k~~~~i~A~~~G~v~~i~v~~G~~V~~G~-~l~~i~~ 78 (80) T 1pmr_A 21 TWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQ-ILGRLRE 78 (80) T ss_dssp BCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSS-EEEBCCC T ss_pred EEEECCCCEECCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 999279899979998999993776999981379999999778999988999-9999979 No 33 >>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} (B:171-231) Probab=85.83 E-value=0.28 Score=27.92 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=20.8 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 898999963997367622988993077 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) |-.....+|.+.++.|+.||+|++|+. T Consensus 30 g~~~~y~vp~g~~l~V~eGd~V~~G~~ 56 (61) T 2jxm_B 30 GDAVVTSILPGPELIVAVGDTVEAGQL 56 (61) T ss_dssp SCCEEEEECSSSCBCCCTTCEECTTCB T ss_pred CCEEEEECCCCCEEEECCCCEEECCCC T ss_conf 989999738998168788999838981 No 34 >>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:644-718) Probab=84.73 E-value=0.55 Score=25.98 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=29.8 Q ss_pred CCCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCH Q ss_conf 1276608863054143233115730000046872699996051101248975315451013146555650 Q gi|254780577|r 62 PIDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNA 131 (232) Q Consensus 62 ~~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a 131 (232) +.+++.+.||..|+|......... . ...+ ..+..--+--..+-.+||.+|+|.+....+|..... T Consensus 3 ~~~~~~i~ap~~G~i~~~~v~~Gd-~--V~~G--~~l~~ie~~k~~~~v~a~~~G~i~~~~~~~G~~v~~ 67 (75) T 3bg3_A 3 KDVKGQIGAPMPGKVIDIKVVAGA-K--VAKG--QPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEG 67 (75) T ss_dssp CCSSSCEECSSCEEEEEECSCTTC-C--BCTT--CCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECS T ss_pred CCCCCEECCCCCCEEEEEEECCCC-E--ECCC--CEEEEEEHHCCCCEECCCCCEEEEEEEECCCCEECC T ss_conf 999883348999547999969989-8--7999--989999631176605279990898999779898889 No 35 >>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} (A:83-291) Probab=84.66 E-value=2.7 Score=21.34 Aligned_cols=58 Identities=19% Similarity=0.091 Sum_probs=29.0 Q ss_pred EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEE-EEECCCCCCEEEEECCCCCEEECCCEEEEE Q ss_conf 89753154510131465556501012001570689999708982999-985157655036513899857038668888 Q gi|254780577|r 110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGI-VQIAGFVARRIVCWVKPTMKVEAGMRFGII 186 (232) Q Consensus 110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~-~qiag~~arrI~~~~~~g~~v~~G~r~G~i 186 (232) .+|+.+|+|....+..+ +-...+.++..++...+ -.- ..+ ..+++||.|++||.+|.+ T Consensus 116 V~A~~~G~V~~~~~~~~-------------~gg~~V~i~h~~~~~t~~y~~----~~~--~~V~~G~~V~~Gq~IG~~ 174 (209) T 1qwy_A 116 VYSLTDGTVVQAGWSNY-------------GGGNQVTIKEANSNNYQWYMH----NNR--LTVSAGDKVKAGDQIAYS 174 (209) T ss_dssp EECSSSEEEEEEEEETT-------------TTEEEEEEEETTSSEEEEEEE----ESE--ECCCTTCEECTTCEEEEC T ss_pred EEECCCEEEEEEEECCC-------------CCCEEEEEEECCCCEEEEEEE----CCC--CCCCCCCEECCCCEEEEE T ss_conf 98012879999887467-------------898699998489988999787----882--566888999978999986 No 36 >>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} (A:169-231) Probab=84.61 E-value=0.34 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=18.3 Q ss_pred EEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 8999963997367622988993077 Q gi|254780577|r 191 RVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 191 ~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) .....+|.+.++.|+.||+|++|+. T Consensus 34 ~~~y~ip~g~~l~V~~Gd~V~~G~~ 58 (63) T 1hcz_A 34 QVIDIIPRGLELLVSEGESIKLDQP 58 (63) T ss_dssp EEEEEECTTCCBCCCTTCEECTTCB T ss_pred EEEEECCCCCEEEECCCCEEECCCC T ss_conf 7888159998588828988846985 No 37 >>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} (A:157-233) Probab=84.05 E-value=0.5 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=12.8 Q ss_pred CEEEEEECCCCEEEEECCCEEEEEE Q ss_conf 9899996399736762298899307 Q gi|254780577|r 190 SRVDLFLPKDANIRVEIGQKTVAGE 214 (232) Q Consensus 190 S~vdi~lP~~~~~~V~~Gq~V~aGe 214 (232) ......+|.+.++.|+.||+|++|+ T Consensus 46 e~~~y~ip~~~~l~V~~Gd~V~~G~ 70 (77) T 1e2w_A 46 EVVVDKIPAGPDLIVKEGQTVQADQ 70 (77) T ss_dssp CEEEEEECSSSCBCCCTTCEECTTC T ss_pred CEEEEECCCCCEEEECCCCEEECCC T ss_conf 8987842899858860798785698 No 38 >>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} (A:1-82) Probab=80.89 E-value=1.1 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.2 Q ss_pred EEEEEECCCCEEEEECCCEEEEEEEEEEEEC Q ss_conf 8999963997367622988993077879717 Q gi|254780577|r 191 RVDLFLPKDANIRVEIGQKTVAGETVIAEFN 221 (232) Q Consensus 191 ~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~ 221 (232) +..-.+|.+..+.|+.||+|++|+ +|++++ T Consensus 53 ~~~y~ip~Ga~l~V~dGd~V~~G~-~laeWD 82 (82) T 2auk_A 53 KESYKVPYGAVLAKGDGEQVAGGE-TVANWD 82 (82) T ss_dssp EEEEECCTTCEESSCTTCEECTTC-EEEECC T ss_pred EEEEECCCCCEEEECCCCEEEECE-EEEEEC T ss_conf 999765876189982797876020-489814 No 39 >>3iyd_D DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (D:938-1020) Probab=80.35 E-value=0.7 Score=25.29 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.9 Q ss_pred EEECCCCEEEEECCCEEEEEEEEEEE Q ss_conf 99639973676229889930778797 Q gi|254780577|r 194 LFLPKDANIRVEIGQKTVAGETVIAE 219 (232) Q Consensus 194 i~lP~~~~~~V~~Gq~V~aGeTila~ 219 (232) -.+|.++.+.|+.||+|++|+ .|++ T Consensus 58 y~vp~Ga~l~V~dGd~Vk~G~-~lae 82 (83) T 3iyd_D 58 YKVPYGAVLAKGDGEQVAGGE-TVAN 82 (83) T ss_dssp CCCCSSCCBSSCTTCEECSSE-EEEE T ss_pred HHHHCCEEEEEECCCEEECCE-EEEE T ss_conf 533110147873695476253-7994 No 40 >>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:102-189) Probab=77.37 E-value=0.81 Score=24.86 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=24.2 Q ss_pred EECCCCCEEECCCEEEEEEECC--EEEEEECCCCE Q ss_conf 5138998570386688883289--89999639973 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRFGS--RVDLFLPKDAN 201 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irfGS--~vdi~lP~~~~ 201 (232) ..+++|+.+..||-+|...-++ .--+.+|.+.+ T Consensus 21 p~vk~Gd~V~~GdilG~V~Et~~i~HkIMvPp~~~ 55 (88) T 3i4l_A 21 PKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIE 55 (88) T ss_dssp ECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 43345880015761365755454344334688767 No 41 >>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (C:173-232) Probab=72.14 E-value=0.24 Score=28.44 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=22.5 Q ss_pred ECCEEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 2898999963997367622988993077 Q gi|254780577|r 188 FGSRVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 188 fGS~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) -|....-.+|.+.++.|+.||+|++|+. T Consensus 31 ~ge~~~y~IP~g~~l~V~eGd~V~~G~~ 58 (60) T 1vf5_C 31 SGKTVVDTIPAGPELIVSEGQAVKAGEA 58 (60) T ss_dssp SSSCCCCCCCSSSCCCCCTTCCCTTSCC T ss_pred CCCEEEEECCCCCEEEEECCCEEECCCC T ss_conf 9988777428997588707987856986 No 42 >>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29} (A:166-334) Probab=69.84 E-value=1.4 Score=23.35 Aligned_cols=74 Identities=8% Similarity=-0.053 Sum_probs=40.3 Q ss_pred ECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEE--EEEEECCCCCCEEEEECCCCCEEEC Q ss_conf 05110124897531545101314655565010120015706899997089829--9998515765503651389985703 Q gi|254780577|r 102 MNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNI--GIVQIAGFVARRIVCWVKPTMKVEA 179 (232) Q Consensus 102 ls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i--~~~qiag~~arrI~~~~~~g~~v~~ 179 (232) .++-.....+++.+|+|..........-. =..+.++..++.- .....+- +. ...+++||.|++ T Consensus 32 ~~~~g~~~V~a~~~G~V~~~~~~~~~~~~-----------G~~V~i~h~~g~~~~y~~~y~~-~~---~~~V~~G~~V~~ 96 (169) T 3csq_A 32 VGKTEKYPYYAPCDCTCVWRGDASAYLAW-----------TSDKEVMCADGSVRYITWVNVH-ES---PLPFDVGKKLKK 96 (169) T ss_dssp CCSSSSCEEECSSSEEEEEEETTTTEEEE-----------EESSCEECTTSCEECEEEEEEC-CS---SCCCCTTCEECT T ss_pred CCCCCCCEEEECCCEEEEEEECCCCCCCC-----------CCEEEEEECCCCEEEEEEEEEE-CC---CCCCCCCCEECC T ss_conf 69999971997899799998636776543-----------7769999679985799999994-56---256899699789 Q ss_pred CCEEEEEEECC Q ss_conf 86688883289 Q gi|254780577|r 180 GMRFGIIRFGS 190 (232) Q Consensus 180 G~r~G~irfGS 190 (232) ||.+|.+--.+ T Consensus 97 G~~IG~~G~~g 107 (169) T 3csq_A 97 GDLMGHTGIGG 107 (169) T ss_dssp TSEEEECBCCC T ss_pred CCEEEEECCCC T ss_conf 99899523898 No 43 >>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C (A:107-183) Probab=69.83 E-value=1.3 Score=23.46 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=26.3 Q ss_pred EEECCCCCEEECCCEEEEEEECCEE-EEEECCCCE Q ss_conf 6513899857038668888328989-999639973 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRFGSRV-DLFLPKDAN 201 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irfGS~v-di~lP~~~~ 201 (232) ...+++||.+..|+-+|...-++-. -+.+|.+.+ T Consensus 14 ~P~vk~Gd~V~~Gdi~G~V~E~~i~HkIMvPp~~~ 48 (77) T 3gqb_A 14 TPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVR 48 (77) T ss_dssp EECCCTTCEECTTCEEEEEEETTEEEEEECCTTCC T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC T ss_conf 21245687135786033532565332023588877 No 44 >>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (D:165-395) Probab=69.48 E-value=0.73 Score=25.17 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=28.1 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 898999963997367622988993077879717877 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) |-..+..+|.+..+.|+.||+|++|+.+-|..++.. T Consensus 176 g~~~ey~Ip~g~~l~V~~Gd~V~~G~~ltG~~~Phd 211 (231) T 2a6h_D 176 TEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEE 211 (231) T ss_dssp ------------------------CCBCCSSCCCSS T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCHHCCCCHHH T ss_conf 344000012234444542100001210010257666 No 45 >>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} (A:585-665) Probab=69.27 E-value=7.5 Score=18.41 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=39.9 Q ss_pred CEEECCCEE---EEEEECCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCCEE Q ss_conf 857038668---8883289899996399736762298899307787971787787200 Q gi|254780577|r 175 MKVEAGMRF---GIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLV 229 (232) Q Consensus 175 ~~v~~G~r~---G~irfGS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~~~~~~ 229 (232) ++.--|+.+ -..+-+.++++|+|++.=.+...|+++.+|+++--..+-.+-|+.| T Consensus 22 ~Qfm~G~~llVaPV~~~~~~~~vylP~g~Wyd~~~~~~~~gg~~~~~~~~l~~iPvfv 79 (81) T 2f2h_A 22 RQYMLGDNVMVAPVFTEAGDVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYV 79 (81) T ss_dssp SCEEETTTEEECCCCSSSCEEEEEECSSEEEETTTCCEEECSEEEEEECCTTCCCEEE T ss_pred CCEEECCCEEEECCCCCCCEEEEECCCCEEEECCCCCEEECCEEEEEECCCCCCCEEE T ss_conf 6165059668831112784489998998079877898998998999857965158798 No 46 >>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} (K:) Probab=68.09 E-value=1.2 Score=23.65 Aligned_cols=52 Identities=27% Similarity=0.171 Sum_probs=29.7 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 1389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) .+++||.|+.||.+--+.= -..+++--|.+ .++.+++||.|..|+ .|+.+.. T Consensus 24 ~vk~GD~V~~gd~i~eVETdKa~~ev~a~~~G~i~~i~~~~G~~v~vG~-~l~~I~~ 79 (229) T 1zy8_K 24 LKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-SLIGLIV 79 (229) T ss_dssp --------------------------------------------------------- T ss_pred EECCCCEECCCCEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCCCCC-CEEEEEE T ss_conf 8289999779997999992877899986045537899972285212466-3124652 No 47 >>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* (A:1-134,A:171-182) Probab=67.47 E-value=4.7 Score=19.73 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=32.5 Q ss_pred EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE Q ss_conf 489753154510131465556501012001570689999708982999985157655036513899857038668888 Q gi|254780577|r 109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII 186 (232) Q Consensus 109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i 186 (232) -.+||.+|+|.+... ..+.++..++...+-.-- .+ ..+++||+|++||.+|.+ T Consensus 50 ~V~A~~~G~V~~~gG-------------------~~ViI~h~~g~~t~Y~hl----~~--~~V~~G~~V~~G~~IG~~ 102 (146) T 3it5_A 50 SVVAAHAGTVRVLSR-------------------CQVRVTHPSGWATNYYHM----DQ--IQVSNGQQVSADTKLGVY 102 (146) T ss_dssp EEECSSSEEEEEEET-------------------TEEEEECTTSEEEEEESE----ES--CCCCTTCEECTTCEEEEE T ss_pred EEEEEECCEEEEECC-------------------EEEEEEECCCCCCCEECC----EE--CCCCCCCCCCCCCEEEEE T ss_conf 599976565778527-------------------899997288346446413----00--331267441488388671 No 48 >>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3a0b_T* 3a0h_T* (T:) Probab=67.40 E-value=7.3 Score=18.45 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999713888762 Q gi|254780577|r 43 GAILTVWCAYFFRDPERVT 61 (232) Q Consensus 43 ~~~~~l~~~~FFRdP~R~~ 61 (232) +++-+.|++-|||.|.|.. T Consensus 12 cii~lfffaiffre~p~i~ 30 (32) T 3bz1_T 12 CIIALFFFAIFFREPPRIT 30 (32) T ss_dssp HHHHHHHHHHHSSCCCCCS T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 9999999999843798767 No 49 >>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} (A:41-173) Probab=64.43 E-value=1.7 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=18.5 Q ss_pred CCCCEEEEEECCEEEEEEECCCCCCCHHH Q ss_conf 10124897531545101314655565010 Q gi|254780577|r 105 FDCHVNRMPIGGEVIKSVHRNGQFMNAAL 133 (232) Q Consensus 105 ~dvH~~raP~~G~V~~~~~~~G~~~~a~~ 133 (232) .+....+||++|.|.+..-.+|.+..+.. T Consensus 95 l~~~~i~AP~~G~V~~~~v~~G~~v~~g~ 123 (133) T 1vf7_A 95 LRYTKVLSPISGRIGRSAVTEGALVTNGQ 123 (133) T ss_dssp HHTTEEECSSSEEECCCSSCBTCEECTTC T ss_pred HHCCCCCCCCCCCCHHCCCCCCCEECCCC T ss_conf 00022112222231110344462761786 No 50 >>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:1012-1066) Probab=62.06 E-value=0.43 Score=26.72 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=20.7 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 898999963997367622988993077 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) |......+|.+..+.|+.||.|++|+. T Consensus 28 ge~~~Y~vp~g~~i~V~eGd~V~~G~~ 54 (55) T 1hqm_D 28 GFSKEYKLPKDARLLVKDGDYVEAGQP 54 (55) T ss_dssp SCCCCCCCSSCCCCCCCSCCSSTTCSC T ss_pred CEEEEEEECCCCEEEECCCCEEECCCE T ss_conf 828999967999898659999807999 No 51 >>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (C:593-659) Probab=61.44 E-value=2.1 Score=22.07 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=10.1 Q ss_pred CEEEEECCCEEEEEEEEEE Q ss_conf 7367622988993077879 Q gi|254780577|r 200 ANIRVEIGQKTVAGETVIA 218 (232) Q Consensus 200 ~~~~V~~Gq~V~aGeTila 218 (232) -++.|++||+|++|+ +|| T Consensus 47 QrPiV~~G~~V~kG~-ilA 64 (67) T 2a6h_C 47 QRPRVVVGQRVRKGD-LLA 64 (67) T ss_dssp CEECCCSSCCBCTTC-EEE T ss_pred CCCCCCCCCEEECCC-EEC T ss_conf 687311473664374-634 No 52 >>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (D:1244-1362) Probab=57.83 E-value=3.7 Score=20.44 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=15.3 Q ss_pred CEEEEEECCCCEEEEECCCEEEEEEEEEE Q ss_conf 98999963997367622988993077879 Q gi|254780577|r 190 SRVDLFLPKDANIRVEIGQKTVAGETVIA 218 (232) Q Consensus 190 S~vdi~lP~~~~~~V~~Gq~V~aGeTila 218 (232) .......|.+.++.|+.||+|++|+ +|+ T Consensus 56 ~~~~~~~~~~q~~~V~~G~~V~~Gq-~lt 83 (119) T 2a6h_D 56 FSKEYKLPKEARLLVKDGDYVEAGQ-PLT 83 (119) T ss_dssp CEEEEEECTTCCCCCCTTSEECTTC-BSS T ss_pred CEEEEECCCCCEEEEECCCEEECCC-EEC T ss_conf 0799984899868984899995688-721 No 53 >>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* (A:) Probab=56.98 E-value=4.6 Score=19.82 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=11.8 Q ss_pred EEEEEECCEEEEEEECCCCCCCHH Q ss_conf 489753154510131465556501 Q gi|254780577|r 109 VNRMPIGGEVIKSVHRNGQFMNAA 132 (232) Q Consensus 109 ~~raP~~G~V~~~~~~~G~~~~a~ 132 (232) ..++|++|.+.......|.+..+. T Consensus 69 ~i~Ap~~G~v~~~~~~~g~~v~~g 92 (116) T 2k32_A 69 EIKAPFDGTIGDALVNIGDYVSAS 92 (116) T ss_dssp EEECSSSEEECCCSCCTTCEECTT T ss_pred EEECCCCEEEEEEECCCCCEECCC T ss_conf 998898879998987999988899 No 54 >>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} (A:266-354) Probab=53.68 E-value=14 Score=16.59 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=33.3 Q ss_pred CEEEEECCCCCEEECCCEEEEEEE----CC-EEEEEECCCC-EEEEECCCEEEEEEE Q ss_conf 503651389985703866888832----89-8999963997-367622988993077 Q gi|254780577|r 165 RRIVCWVKPTMKVEAGMRFGIIRF----GS-RVDLFLPKDA-NIRVEIGQKTVAGET 215 (232) Q Consensus 165 rrI~~~~~~g~~v~~G~r~G~irf----GS-~vdi~lP~~~-~~~V~~Gq~V~aGeT 215 (232) .-+.+.++.|+.|++||.+|.+.. |- ...+.-|.+- -+.....-.|..|+. T Consensus 11 G~~~~~v~lG~~V~~Gq~lg~I~dp~~~g~~~~~i~Ap~~G~v~~~~~~~~V~~Gd~ 67 (89) T 3cdx_A 11 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGDA 67 (89) T ss_dssp EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTCE T ss_pred EEEEEECCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCE T ss_conf 899992789899479998999966777897338998489829998048883248986 No 55 >>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} (A:146-332) Probab=50.98 E-value=15 Score=16.31 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=32.5 Q ss_pred CCEEEEECCCCCEEECCCEEEEEE----ECC-EEEEEECCCC-EEEEECCCEEEEEE Q ss_conf 550365138998570386688883----289-8999963997-36762298899307 Q gi|254780577|r 164 ARRIVCWVKPTMKVEAGMRFGIIR----FGS-RVDLFLPKDA-NIRVEIGQKTVAGE 214 (232) Q Consensus 164 arrI~~~~~~g~~v~~G~r~G~ir----fGS-~vdi~lP~~~-~~~V~~Gq~V~aGe 214 (232) ..-..+..+.|+.|++||.+|.+. ||. ...+.-|.+- -+.....-.|..|+ T Consensus 120 ~G~~~~~~~~G~~V~~G~~ig~I~~~d~~g~~~~~v~Ap~dG~v~~~~~~~~v~~G~ 176 (187) T 2qj8_A 120 PGIFEPRCSVXDEVEQGDVVGVLHPXGSLSAASIDIRAQSKSTVFAIRSAXYVQGNE 176 (187) T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTC T ss_pred CCEEEECCCCCCEECCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCC T ss_conf 866887378989988999999981765568752899958999999843887268999 No 56 >>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} (A:30-190) Probab=49.24 E-value=7.8 Score=18.28 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=14.6 Q ss_pred CCCCEEEEEECCEEEEEEECCCCCCCHHH Q ss_conf 10124897531545101314655565010 Q gi|254780577|r 105 FDCHVNRMPIGGEVIKSVHRNGQFMNAAL 133 (232) Q Consensus 105 ~dvH~~raP~~G~V~~~~~~~G~~~~a~~ 133 (232) .+....+||++|.|.+....+|....+.. T Consensus 122 ~~~~~i~Ap~~G~V~~~~~~~G~~v~~g~ 150 (161) T 3fpp_A 122 LDYTRIVAPMAGEVTQITTLQGQTVIAAQ 150 (161) T ss_dssp TTSSEEECSSSEEEEEESSCTTCEECCTT T ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEECC T ss_conf 12321358832227789935798885110 No 57 >>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (X:) Probab=48.10 E-value=4.4 Score=19.95 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=23.4 Q ss_pred EEEEEECCCCEEEEECCCEEEEEEEEE Q ss_conf 899996399736762298899307787 Q gi|254780577|r 191 RVDLFLPKDANIRVEIGQKTVAGETVI 217 (232) Q Consensus 191 ~vdi~lP~~~~~~V~~Gq~V~aGeTil 217 (232) ..+..+|++..+.|+.||+|++|+.+- T Consensus 148 ~~ey~vp~~~~i~V~~gd~V~~G~~lt 174 (198) T 3bbo_X 148 PNSYRARKRENFRLQREKKKARRENYS 174 (198) T ss_dssp --------------------------- T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 860656665331365504566543210 No 58 >>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:1-77) Probab=43.76 E-value=20 Score=15.58 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=27.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH-HHCCCCCC Q ss_conf 30755549999999999999999999--------------99999999999999-71388876 Q gi|254780577|r 13 PIHFHGWPFIVSFAAFTIIIGMWSYG--------------LLWFGAILTVWCAY-FFRDPERV 60 (232) Q Consensus 13 ~IakEG~~~i~~~~~~~~~~~~~~~~--------------l~~~~~~~~l~~~~-FFRdP~R~ 60 (232) -..+.=||+++...+.....++..+. +..++++.++++.+ -|||=-|. T Consensus 10 lv~~SPWPi~~S~~~~~~~~g~v~~~h~~~~~~~~~~~~~~~~~gl~~l~~~~~~WwrDVirE 72 (77) T 1qle_C 10 ILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWADVVNE 72 (77) T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHTCCCCSSSCCCSSCTTTHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799983189999999999999999998463122354419999999999999999999999997 No 59 >>3iyd_C DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (C:701-796) Probab=42.99 E-value=4.5 Score=19.91 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.8 Q ss_pred EEEEECCCCEEEEE Q ss_conf 08863054143233 Q gi|254780577|r 67 LLISPADGLVSAIC 80 (232) Q Consensus 67 ~ivSPaDG~V~~i~ 80 (232) +++|..||+|.+++ T Consensus 15 ~i~a~~~G~V~yvd 28 (96) T 3iyd_C 15 TAVAKRGGVVQYVD 28 (96) T ss_dssp SCBCSSCBCEEEEC T ss_pred HHHHCCCCEEEEEC T ss_conf 87541598799743 No 60 >>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:1-112) Probab=42.68 E-value=9.1 Score=17.82 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=37.8 Q ss_pred EEEECCCCCCCHHHCCCCCCCEEEEEEEECCC--CE--EEEEEECCCCCCEEEEECCCCCEEEC-CCEEE Q ss_conf 01314655565010120015706899997089--82--99998515765503651389985703-86688 Q gi|254780577|r 120 KSVHRNGQFMNAALDKASEQNERQSLVLKTIH--GN--IGIVQIAGFVARRIVCWVKPTMKVEA-GMRFG 184 (232) Q Consensus 120 ~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~--~~--i~~~qiag~~arrI~~~~~~g~~v~~-G~r~G 184 (232) ...|.+|+|.....+......++..+.+.+.. +. +.++...+-.+-+..+..++|+.|.- |...| T Consensus 41 ~~~~~pGQ~v~l~~~~~~~~~~~r~~s~~s~~~~~~~~~~vk~~~~G~~s~~l~~l~~Gd~v~~~gpp~G 110 (112) T 2bgi_A 41 TLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFYSIKVPDGPLTSRLQHIKVGEQIILRPKPVG 110 (112) T ss_dssp TCCCCTTCEEEEEEECTTSCEEEEEEECCSCTTCSEEEEEEECCTTCTTHHHHTTCCTTCEEEEEEEEEC T ss_pred CCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCC T ss_conf 8988999847999537799277566554779989874555699505875404555325664311259875 No 61 >>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} (A:21-166) Probab=42.42 E-value=6.7 Score=18.74 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=19.2 Q ss_pred CCCCCEEEEEECCEEEEEEECCCCCCCHHH Q ss_conf 110124897531545101314655565010 Q gi|254780577|r 104 IFDCHVNRMPIGGEVIKSVHRNGQFMNAAL 133 (232) Q Consensus 104 ~~dvH~~raP~~G~V~~~~~~~G~~~~a~~ 133 (232) -.+.+.++||++|.|.+....+|....+.. T Consensus 107 ~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~ 136 (146) T 2f1m_A 107 NLAYTKVTSPISGRIGKSNVTEGALVQNGQ 136 (146) T ss_dssp HHHTTEECCSSCEEECCCSSCBTCEECTTC T ss_pred HHCCCCEEECEEEEEEEEEEEEEEEECCCC T ss_conf 210021020000131544677778971687 No 62 >>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A* (A:527-604) Probab=42.37 E-value=20 Score=15.52 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=27.3 Q ss_pred EECCEEEEEECCCCEEEEECCCEEEEEEEEEEEECC Q ss_conf 328989999639973676229889930778797178 Q gi|254780577|r 187 RFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 187 rfGS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~ 222 (232) .=|..+++|||++.=.+...|+++.+|+ +-+-+++ T Consensus 37 ~~~~~~~vylP~g~Wyd~~t~~~~~g~~-~~~pl~~ 71 (78) T 2g3m_A 37 SKEESRLVTLPRGKWYNYWNGEIINGKS-VVKSTHE 71 (78) T ss_dssp SSSSSCEEEECSSEEEETTTCCEEESSE-EEECCSS T ss_pred ECCCEEEEECCCCCEEECCCCCEEECCE-EECCCCC T ss_conf 0884799988991089888997986984-8777761 No 63 >>1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A (A:) Probab=39.46 E-value=23 Score=15.14 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=30.0 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCEE Q ss_conf 1389985703866888832-898999963997---3676229889 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQKT 210 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~V 210 (232) ..++|+++++|+.++-+.- ....+++-|-+- +++.+.|+.. T Consensus 52 ~~~~G~~v~~gd~l~~IEs~K~~~~i~sP~~G~v~~vn~~~~~~p 96 (136) T 1zko_A 52 LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEP 96 (136) T ss_dssp CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCT T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHCCH T ss_conf 799986103797089998603431100366649997556453198 No 64 >>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} (A:369-459) Probab=38.64 E-value=11 Score=17.40 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=10.1 Q ss_pred CEEEEECCCEEEEEEEEEEEEC Q ss_conf 7367622988993077879717 Q gi|254780577|r 200 ANIRVEIGQKTVAGETVIAEFN 221 (232) Q Consensus 200 ~~~~V~~Gq~V~aGeTila~l~ 221 (232) ..+++++||+|+.|| .|+.+= T Consensus 45 I~l~~k~Gd~V~~Ge-pl~~i~ 65 (91) T 1uou_A 45 AELLVDVGQRLRRGT-PWLRVH 65 (91) T ss_dssp EEECSCTTCEECTTC-EEEEEE T ss_pred EEEECCCCCEECCCC-EEEEEE T ss_conf 686146879856999-389996 No 65 >>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B (A:119-241) Probab=35.81 E-value=13 Score=16.78 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=16.1 Q ss_pred CCCEEEEEECCEEEEEEECCCCCCCHHH Q ss_conf 0124897531545101314655565010 Q gi|254780577|r 106 DCHVNRMPIGGEVIKSVHRNGQFMNAAL 133 (232) Q Consensus 106 dvH~~raP~~G~V~~~~~~~G~~~~a~~ 133 (232) +.-..+||++|.|.......|.+..+.. T Consensus 88 ~~~~i~AP~~G~V~~~~v~~G~~v~~g~ 115 (123) T 3h9i_A 88 TRFTLKAPIDGVITAFDLRAGMNIAKDN 115 (123) T ss_dssp CEEEECCSSSEEEECCCCCSSCCCCTEE T ss_pred CCEEEEEEECEEEEEEECCCCCCCCCCC T ss_conf 1478987532068885111001221112 No 66 >>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement; HET: MES; 2.10A {Bacillus stearothermophilus} (A:327-423) Probab=32.69 E-value=13 Score=16.75 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.1 Q ss_pred EEEEECCCEEEEEE Q ss_conf 36762298899307 Q gi|254780577|r 201 NIRVEIGQKTVAGE 214 (232) Q Consensus 201 ~~~V~~Gq~V~aGe 214 (232) .++.++||+|..|+ T Consensus 53 ~l~~kvGd~V~~G~ 66 (97) T 1brw_A 53 VLHKKIGDRVQKGE 66 (97) T ss_dssp EESCCTTCEECTTC T ss_pred EEECCCCCEECCCC T ss_conf 98516959967999 No 67 >>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory for structural genomics hyperthermophIle, PSI; 2.80A {Pyrococcus furiosus} (A:) Probab=30.11 E-value=3.4 Score=20.68 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=36.3 Q ss_pred CEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCC---CCEEEEEECCEEEEEEECCCCCCCHHHC Q ss_conf 60886305414323311573000004687269999605110---1248975315451013146555650101 Q gi|254780577|r 66 NLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFD---CHVNRMPIGGEVIKSVHRNGQFMNAALD 134 (232) Q Consensus 66 ~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~d---vH~~raP~~G~V~~~~~~~G~~~~a~~~ 134 (232) --++-|.||+--.+ .+.+...|+|-+.--+ ..+.+.|..++......-.|.+...... T Consensus 88 ~wviDPIDGT~nf~-----------~g~p~~~vsial~~~g~pv~gvv~~P~~~~~~~a~~g~ga~~~~~~~ 148 (262) T 1xi6_A 88 TVIVDPLDGSYNFI-----------AGIPFFALSLAVFKKDKPIYAIIYEPMTERFFEGIPGEGAFLNGKRI 148 (262) T ss_dssp EEEEEEEESHHHHH-----------HTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEEETTTEEEETTEEC T ss_pred EEEEEECCCCCCCC-----------CCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC T ss_conf 37764215542015-----------10002202022110002012333222233222344420000014455 No 68 >>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} (A:330-429) Probab=30.02 E-value=10 Score=17.43 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=5.9 Q ss_pred EEEEECCCEEEEEE Q ss_conf 36762298899307 Q gi|254780577|r 201 NIRVEIGQKTVAGE 214 (232) Q Consensus 201 ~~~V~~Gq~V~aGe 214 (232) ++..++||+|..|+ T Consensus 55 ~l~~kvGd~V~~Ge 68 (100) T 2tpt_A 55 TDMARLGDQVDGQR 68 (100) T ss_dssp ESCCCTTCEEBTTB T ss_pred EEECCCCCEECCCC T ss_conf 87326969867999 No 69 >>3iyd_D DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (D:1021-1176) Probab=29.36 E-value=27 Score=14.71 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=9.8 Q ss_pred ECCCCCEEECCCEEEEEEE Q ss_conf 1389985703866888832 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF 188 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf 188 (232) .+..||.++.|+-+.++-| T Consensus 88 ~V~~gq~Ie~Gt~Lt~~tf 106 (156) T 3iyd_D 88 QLEDGVQISSGDTLARIPQ 106 (156) T ss_dssp CCCSSCEECTTCEEEEECC T ss_pred EECCCCCCCCCCHHHHCHH T ss_conf 1023554455437652436 No 70 >>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} (A:1-99) Probab=29.29 E-value=17 Score=16.10 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=37.4 Q ss_pred EEEEEECCCCCCCHHHCCCCCCCEEEEEEEECC-CCE--EEEEEEC-CCCCCEEEEECCCCCEEECCCEEE Q ss_conf 510131465556501012001570689999708-982--9999851-576550365138998570386688 Q gi|254780577|r 118 VIKSVHRNGQFMNAALDKASEQNERQSLVLKTI-HGN--IGIVQIA-GFVARRIVCWVKPTMKVEAGMRFG 184 (232) Q Consensus 118 V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~-~~~--i~~~qia-g~~arrI~~~~~~g~~v~~G~r~G 184 (232) .....|.+|+|.....+......-|.....+.. ++. +.+.... |...+.+ +..++|+++...-..| T Consensus 26 ~~~~~~~~GQ~i~i~~~~~g~~~~r~ySi~s~~~~~~~~~~i~~~~~G~~s~~l-~~l~~Gd~i~i~gP~G 95 (99) T 1fdr_A 26 APVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRL-AALKPGDEVQVVSEAA 95 (99) T ss_dssp CCCCCCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHHH-HTCCTTCEEEEESSCB T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECEEECCCCCCCEEEEEEEECCCCCCHHH-HHHCCCCEEEEECCCC T ss_conf 899987998259999623991775506541589999569999996798630666-7526897899732678 No 71 >>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} (A:93-159,A:246-425) Probab=28.10 E-value=17 Score=16.07 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=19.0 Q ss_pred HHCCCCCCCCCC-CCEEEEECCCCEEEEEE Q ss_conf 713888762127-66088630541432331 Q gi|254780577|r 53 FFRDPERVTPID-PNLLISPADGLVSAICE 81 (232) Q Consensus 53 FFRdP~R~~~~~-~~~ivSPaDG~V~~i~~ 81 (232) +.+||++.+.+. ...+.||-||.|..|+. T Consensus 147 ~~~~~~~lp~a~~~~~v~A~~~Gyi~~ida 176 (247) T 3h5q_A 147 VIDHPERLPQAQYQIEYKAKKSGYVTELVS 176 (247) T ss_dssp HHHCGGGSCCCSEEEEEECSSCEEEEEECH T ss_pred HCCCCCCCCCCCEEEEEECCCCEEEEEEEH T ss_conf 034610088887158883488879999507 No 72 >>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} (A:151-230) Probab=28.05 E-value=25 Score=14.92 Aligned_cols=39 Identities=28% Similarity=0.602 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHHHCCCC---C--CCCC-CCCEEEEECCCCEEE Q ss_conf 99999999999999713888---7--6212-766088630541432 Q gi|254780577|r 39 LLWFGAILTVWCAYFFRDPE---R--VTPI-DPNLLISPADGLVSA 78 (232) Q Consensus 39 l~~~~~~~~l~~~~FFRdP~---R--~~~~-~~~~ivSPaDG~V~~ 78 (232) +.|..+.+ .|+.|.+|-|- | .+.+ .++.+++|.|=+|.. T Consensus 11 ~~W~~~g~-~Wi~~W~~rp~fipR~~~v~ag~~~eLit~~Dkkvg~ 55 (80) T 1yew_A 11 AFWFAIGV-AWIGYWSRRPIFIPRLLMVDAGRADELVSATDRKVAM 55 (80) T ss_dssp HHHHHHHH-HHHHHHHSSCCSHHHHHHHHSSCSCTTSCTTHHHHHH T ss_pred HHHHHHHH-HHHHHHHHCCCCCHHHHHHHCCCCHHCCCCCCCEEEH T ss_conf 59999999-9877877546531136777648812116842225234 No 73 >>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein structure initiative, midwest center for structural genomics, GTP-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} (A:207-277) Probab=27.32 E-value=36 Score=13.85 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=10.0 Q ss_pred EEEEECCCEEEEEEEEEEEE Q ss_conf 36762298899307787971 Q gi|254780577|r 201 NIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 201 ~~~V~~Gq~V~aGeTila~l 220 (232) .+.|..|++|+.|. |+|.= T Consensus 30 ~lFV~pg~~VYeGm-IVGe~ 48 (71) T 3e3x_A 30 RLFIGHGVEVYEGX-VIGIH 48 (71) T ss_dssp EESCCTTCEECTTE-EEEEE T ss_pred EEEECCCCHHHCCE-EEEEC T ss_conf 18865660322476-88522 No 74 >>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:) Probab=26.98 E-value=36 Score=13.81 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCC----CCCEEEEE Q ss_conf 999999999971388876212----76608863 Q gi|254780577|r 43 GAILTVWCAYFFRDPERVTPI----DPNLLISP 71 (232) Q Consensus 43 ~~~~~l~~~~FFRdP~R~~~~----~~~~ivSP 71 (232) ++++++++++...||+.+.-. .|+..+.| T Consensus 54 lFa~~m~v~~~tl~~~~P~~~~~~s~PGL~~rP 86 (290) T 3ixz_B 54 IFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRP 86 (290) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC T ss_conf 999999999976277788753467898523214 No 75 >>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} (A:) Probab=26.52 E-value=37 Score=13.75 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=24.4 Q ss_pred ECCCCCCEEEEECCCCCEEECCCEEEE Q ss_conf 515765503651389985703866888 Q gi|254780577|r 159 IAGFVARRIVCWVKPTMKVEAGMRFGI 185 (232) Q Consensus 159 iag~~arrI~~~~~~g~~v~~G~r~G~ 185 (232) .||....+|.|++.+.|.++.||+.-| T Consensus 90 ~a~~YF~KieCFCF~eQ~L~pgE~~~m 116 (164) T 1so9_A 90 AAGAYFNKVQCFCFTETTLEPGEEMEM 116 (164) T ss_dssp SCSTTBTTSCCSSCSCCEECTTCEEEE T ss_pred HHHHHEECCCEEEEEEEEECCCCEEEE T ss_conf 954452634376764168689987997 No 76 >>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=25.64 E-value=38 Score=13.65 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=28.5 Q ss_pred ECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCC Q ss_conf 31545101314655565010120015706899997089 Q gi|254780577|r 114 IGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIH 151 (232) Q Consensus 114 ~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~ 151 (232) -.|......|..|+|+++........|++..+.|++.. T Consensus 11 ~~Ge~VlarW~Dg~~Y~a~i~~v~~~~~~y~V~F~Dgs 48 (68) T 2e5p_A 11 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDS 48 (68) T ss_dssp CTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTE T ss_pred CCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEECCC T ss_conf 35888999930687876689998447978999991697 No 77 >>1slu_A Ecotin; serine protease, inhibitor, complex, metal binding sites, protein engineering, protease-substrate interactions; 1.80A {Escherichia coli} (A:) Probab=24.35 E-value=40 Score=13.49 Aligned_cols=22 Identities=18% Similarity=0.765 Sum_probs=16.9 Q ss_pred EEEEECCE--EEEEECCCCEEEEE Q ss_conf 88832898--99996399736762 Q gi|254780577|r 184 GIIRFGSR--VDLFLPKDANIRVE 205 (232) Q Consensus 184 G~irfGS~--vdi~lP~~~~~~V~ 205 (232) -++|..|+ +.+|+|+|+++... T Consensus 105 ~~irYnSklPiVvY~P~~~evryR 128 (142) T 1slu_A 105 GMLRYNSKLPIVVYTPDNVDVKYR 128 (142) T ss_dssp GEEECCTTSCEEEEEETTCEEEEE T ss_pred CEEECCCCCCEEEECCCCCEEEEE T ss_conf 258517889879988899789999 No 78 >>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreductase; HET: FAD; 1.56A {Physarum polycephalum} (A:1-110) Probab=23.96 E-value=39 Score=13.63 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=31.0 Q ss_pred EEEECCCCCCCHHHCCCCCCCEEEEEEEEC--CCCEEE--EEEEC-CCCCCEEEEECCCCCEEECCCEEE Q ss_conf 013146555650101200157068999970--898299--99851-576550365138998570386688 Q gi|254780577|r 120 KSVHRNGQFMNAALDKASEQNERQSLVLKT--IHGNIG--IVQIA-GFVARRIVCWVKPTMKVEAGMRFG 184 (232) Q Consensus 120 ~~~~~~G~~~~a~~~~~~~~NER~~~~~~~--~~~~i~--~~qia-g~~arrI~~~~~~g~~v~~G~r~G 184 (232) ...+.+|+|.....+.....-.|.++.... +.+.+. +.... |...+. .+..++||.++-.-.+| T Consensus 39 ~~~~~~Gq~i~i~~~~~~~~~~R~yT~~s~~~~~~~l~i~vk~~~~G~~s~~-l~~l~~Gd~v~i~gP~G 107 (110) T 2eix_A 39 VVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQY-IDHLNPGDFLQVRGPKG 107 (110) T ss_dssp CCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTCHHHHH-HHTCCTTCEEEEEEEEC T ss_pred CCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCCCC-HHHCCCCEEEEEECCCC T ss_conf 4589875289997346775154033455578899889999996589887746-32246522786316888 No 79 >>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A (A:47-286) Probab=23.29 E-value=31 Score=14.23 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=22.9 Q ss_pred CCCEEEEECC-CCCEEECCCEEEEEEECCEEEEEECCCCE Q ss_conf 6550365138-99857038668888328989999639973 Q gi|254780577|r 163 VARRIVCWVK-PTMKVEAGMRFGIIRFGSRVDLFLPKDAN 201 (232) Q Consensus 163 ~arrI~~~~~-~g~~v~~G~r~G~irfGS~vdi~lP~~~~ 201 (232) +-|-|+.+.. .=...+-|+.+|.++||| +|+|...+ T Consensus 177 LrRPIIV~a~~~lr~~~~G~~~~p~~f~G---iYLPL~w~ 213 (240) T 3dkb_A 177 LRRPIIVISDKMLRSLESGSNFAPLKVGG---IYLPLHWP 213 (240) T ss_dssp TTSCEEEEECCCCTTCCCC----CCCCCE---EECCTTSC T ss_pred HHCCCEEEEHHHHHCCCCCCCCCCCCCCE---EEECCCCC T ss_conf 71896686336654255676545566660---65156467 No 80 >>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} (A:) Probab=23.23 E-value=42 Score=13.35 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=28.6 Q ss_pred CEEEEEEECCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 66888832898999963997367622988993077879717877 Q gi|254780577|r 181 MRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 181 ~r~G~irfGS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) +.+|+-+-.|.+.+++|..++...+.+..|+...+|=|++..-+ T Consensus 73 ~~y~~~~~tG~~~V~l~~~C~~~fk~~~~v~Y~~~Vtg~ie~Gk 116 (170) T 1ydu_A 73 TNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGK 116 (170) T ss_dssp CEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSC T ss_pred EEEEEECCCCEEEEEECCCEEEEECCCEEEEECCEEEEEECCCC T ss_conf 58989789838999958978999778479998688999984796 No 81 >>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:20-83) Probab=22.30 E-value=24 Score=15.04 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=26.7 Q ss_pred CCEEEEEEECCEEEEEECCCCEEEEECCCEEEEEE Q ss_conf 86688883289899996399736762298899307 Q gi|254780577|r 180 GMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGE 214 (232) Q Consensus 180 G~r~G~irfGS~vdi~lP~~~~~~V~~Gq~V~aGe 214 (232) ...+||..--+.=|+|+|.+.--.+.-||+|.+-. T Consensus 11 ~~GfgFv~~d~~~DifIp~~~l~~A~~GD~V~v~i 45 (64) T 2id0_A 11 EKGFGFLEVDAQKSYFIPPPQXKKVXHGDRIIAVI 45 (64) T ss_dssp SSSCEEEECSSSCEEEECHHHHTTSCTTCEEEEEE T ss_pred CCCEEEEEECCCCCEEECHHHHCCCCCCCEEEEEE T ss_conf 89428997589888899989980488999999999 No 82 >>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:1-103) Probab=20.63 E-value=48 Score=13.00 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=37.5 Q ss_pred EEEECCCCCCCHHHCCCCCCCEEEEEEEE--CCCCEEEEE--EECCCCCCEEEEECCCCCEEECCCEEE Q ss_conf 01314655565010120015706899997--089829999--851576550365138998570386688 Q gi|254780577|r 120 KSVHRNGQFMNAALDKASEQNERQSLVLK--TIHGNIGIV--QIAGFVARRIVCWVKPTMKVEAGMRFG 184 (232) Q Consensus 120 ~~~~~~G~~~~a~~~~~~~~NER~~~~~~--~~~~~i~~~--qiag~~arrI~~~~~~g~~v~~G~r~G 184 (232) ...|.+|+|.....+......-|...... ++.+.+.+. ...+--+-+-.+..++|+.+.---.+| T Consensus 31 ~~~~~pGQ~i~i~~~~~~~~~~r~ys~~s~~~~~~~l~~~vk~~~~G~~s~~l~~l~~Gd~i~i~gP~G 99 (103) T 1ep3_B 31 DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLG 99 (103) T ss_dssp GGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHHHTCCTTCEEEEEEEES T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCEEEEECCCC T ss_conf 467899950899947899288998895624899988999999889975789985489989999974656 No 83 >>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* (G:1103-1260) Probab=20.20 E-value=20 Score=15.52 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=21.6 Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCC Q ss_conf 97138887621276608863054143233115730 Q gi|254780577|r 52 YFFRDPERVTPIDPNLLISPADGLVSAICEMSPPP 86 (232) Q Consensus 52 ~FFRdP~R~~~~~~~~ivSPaDG~V~~i~~~~~~~ 86 (232) .+.|+-.|...+- .-+++|..|..+.|.+.+++. T Consensus 39 ~ivqg~~~~~NPi-rr~faP~~g~~Vei~~~~~~~ 72 (158) T 2uv8_G 39 FITQDKMFVSNPI-RKVFKPSQGMVVEISNGNTSS 72 (158) T ss_dssp HHHCSSCSHHHHH-HHCCEEEETTEEEECHHHHHH T ss_pred HHCCCCCHHHHHH-CCCCEEECCCCCCCCCHHHHC T ss_conf 7507751267775-167626407844678277751 Done!